Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold328
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 936272
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
File 3 of 6
Found at i:427482 original size:611 final size:608
Alignment explanation
Indices: 426203--428146 Score: 2464
Period size: 611 Copynumber: 3.1 Consensus size: 608
426193 GTTAAAGATG
* *
426203 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGACGCCAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGATGCCAATAT
* * * * *
426268 GCTGATTCAAGGCCAGGGATATTGGACTTAAAGATGACAAAGGTGCTAATATGCTGATTCAAGGC
63 GCTGATTCAAGGCCAGCGATATTGGA-TT-----TG---GAGTTGCCAATGTGCTGATTCAAGGC
* * * * *** *
426333 CAGCGATATTGGACTTAAAGGTGACAAAGACACCAATATGCTGATTCAAGGCCAGCGATATTGGA
119 CAGCTACATTGGACTTAAAGATG---ATGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
* * *
426398 CTTAAAGGT-------G-CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGG
181 CTTAAAGGTGACAAAGGCCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
* ** *
426455 TGCCAATATGCTGATTTGAGGCTAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGC
240 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGC
* *
426520 CAGCTACATTGGACTTAAATATAAAGGTGCAAATATGCTGATTCAAGGCCAGCTATATTGGACTT
305 CAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
426585 AAAGGTGTCAAAGGCACCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATG
370 AAAGGTG-CAAAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATG
* * * *
426650 TGCTGATTCAAGGCTAGTGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTGCA
434 TGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACA
*
426715 TTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGA
499 TTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
426780 CAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
564 CAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
426825 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGC
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGAAGATGCCAATATGC
* *
426890 TGATTTAAGGCCAGCGATATTGGATTTGGAGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTA
65 TGATTCAAGGCCAGCGATATTGGATTTGGAGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
426955 GACTTAAAGATGATGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAA
130 GACTTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAA
427020 AGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
195 AGGC-CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
427085 GGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
259 GGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
427150 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAAAGGCACCA
324 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-CAAAGGCACCA
* *
427215 ATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAACG
388 ATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCG
427280 ATATTGGACTTGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
453 ATATTGGACTTGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
427345 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAAAGGCGCCAATATGCTG
518 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAAAGGCGCCAATATGCTG
*
427410 ATTCAAAGCCAGCGATATTGGACTTA
583 ATTCAAGGCCAGCGATATTGGACTTA
* * * *
427436 AAGGTGCCAATGTGCTGATTCAAGGTCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGC
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGAAGATGCCAATATGC
* *
427501 TGATTCAAGGCCAGCGATATTGGACTTGGAGTTGCCAATGTGCTGATTCAAGGCTAGCTACATTG
65 TGATTCAAGGCCAGCGATATTGGATTTGGAGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* *
427566 GACTTAAAGATGATGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGATTTAAAGGTGACAA
130 GACTTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAA
*
427631 AGGCGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
195 AGGC-CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
* * * * *
427696 GGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
259 GGCCAGCGATATTGGACTT----GA--A-GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
* * * * * * *
427761 ACTT---G---GAGTTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG--ATG
317 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCAAAG
** *
427818 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTAAAAAAAAAGATGTCAATGT
382 GCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-G----------G-TGCCAATGT
* * * *
427883 GTTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAGGTGCCAATCTGCTGATTCAAGGC
435 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T-G--AAGGTGCCAATATGCTGATTCAAGGC
* * *
427948 CAGCTATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
491 CAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
428007 AAA---GA-AGAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
556 AAAGGTGACA-AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * ** *
428057 GAACGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACAAAGAAGCCAATATG
1 -AA-GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATG
* *
428122 CTGATTCAAGGCTAGCTATATTGGA
64 CTGATTCAAGGCCAGCGATATTGGA
428147 CTTAAAGGAA
Statistics
Matches: 1192, Mismatches: 89, Indels: 82
0.87 0.07 0.06
Matches are distributed among these distances:
608 42 0.04
609 41 0.03
610 1 0.00
611 666 0.56
612 43 0.04
613 1 0.00
614 2 0.00
615 4 0.00
617 34 0.03
618 37 0.03
619 2 0.00
620 36 0.03
621 72 0.06
622 82 0.07
623 43 0.04
624 45 0.04
627 1 0.00
628 1 0.00
629 1 0.00
630 38 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (608 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCT
GATTCAAGGCCAGCGATATTGGATTTGGAGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
ACTTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAAA
GGCCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGG
CCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
TAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCAAAGGCACCAATA
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA
TTGGACTTGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGACAAAGGCGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTA
Found at i:427914 original size:55 final size:54
Alignment explanation
Indices: 427773--428154 Score: 244
Period size: 49 Copynumber: 7.7 Consensus size: 54
427763 TTGGAGTTGT
* * ** * *
427773 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA-G----ATGATGGTGC
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
* * *
427822 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTAAAAAAAAAGATGT
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT-AAAAAAAAGATGC
* * * *** *
427877 CAATGTGTTGATTCAAGGCCAGCTATATTGAACTTAAA-G-ATGGAAAAGGTGC
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
427929 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAA-G---------G-TGC
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
* * * *
427972 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA-G---AAGAATG-TGC
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
* *
428021 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A-G------AACGATGC
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
* * * *
428066 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA-G----ACAAAGAAGC
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
* *
428115 CAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGG
1 CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
428155 AAGATGCCAC
Statistics
Matches: 283, Mismatches: 32, Indels: 35
0.81 0.09 0.10
Matches are distributed among these distances:
43 40 0.14
44 4 0.01
45 36 0.13
47 4 0.01
49 113 0.40
50 2 0.01
52 44 0.16
54 1 0.00
55 39 0.14
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26
Consensus pattern (54 bp):
CAATCTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTAAAAAAAAGATGC
Found at i:427946 original size:199 final size:197
Alignment explanation
Indices: 427680--428154 Score: 607
Period size: 199 Copynumber: 2.5 Consensus size: 197
427670 TTAAAGGTGC
** *
427680 CAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAACTTAAAAGATGAAGGTGCCAATATGCTGATTCA
** * *
427745 AGGCCAGCGATATTGGACTTGGAGTTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
66 AGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
427810 AGATG-ATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTAAAAAAAAAGA
131 AGAAGAAT-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTAAAAAAAAAGA
427874 TGT
195 TGT
* * * *
427877 CAATGTGTTGATTCAAGGCCAGCTATATTGAACTT-AAAGATGGAAAAGGTGCCAATCTGCTGAT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAACTTAAAAGAT-G--AAGGTGCCAATATGCTGAT
*
427941 TCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
63 TCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
* *
428006 TAAAGAAGAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A-G-------AAC
128 TAAAGAAGAATGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTAAAAAAAAA
*
428061 GATGC
193 GATGT
* * ** **
428066 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGACAAAGAAGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAACTTAAAAGATGAAGGTGCCAATATGCTGATTCA
* *
428130 AGGCTAGCTATATTGGACTTAAAGG
66 AGGCCAGCGATATTGGACTTAAAGG
428155 AAGATGCCAC
Statistics
Matches: 249, Mismatches: 25, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
186 43 0.17
189 43 0.17
196 7 0.03
197 32 0.13
199 122 0.49
200 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (197 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAACTTAAAAGATGAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
AGAAGAATGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTAAAAAAAAAGAT
GT
Found at i:427982 original size:43 final size:43
Alignment explanation
Indices: 427921--428154 Score: 270
Period size: 49 Copynumber: 5.1 Consensus size: 43
427911 TAAAGATGGA
*
427921 AAAGGTGCCAATCTGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
427964 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
428007 AAAGAAGAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 --A-AAG---GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
428056 AGAACGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 A-AA-GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
428101 AAAGACAAAGAAGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTT
1 AAAG-----G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
428150 AAAGG
1 AAAGG
428155 AAGATGCCAC
Statistics
Matches: 166, Mismatches: 12, Indels: 25
0.82 0.06 0.12
Matches are distributed among these distances:
43 42 0.25
44 3 0.02
45 38 0.23
46 3 0.02
47 4 0.02
48 1 0.01
49 75 0.45
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:428412 original size:32 final size:32
Alignment explanation
Indices: 428159--428413 Score: 361
Period size: 32 Copynumber: 7.9 Consensus size: 32
428149 TAAAGGAAGA
*
428159 TGCCACCAACTTGTGTGGGCTTTTGAAGAA-GGT
1 TGCCACCGACTTGTGTGGGC-TTTGAA-AAGGGT
* * *
428192 TGCTACCGACTTGTGTGGGCTTT-AGAGAGGAT
1 TGCCACCGACTTGTGTGGGCTTTGA-AAAGGGT
* *
428224 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAGGGT
* *
428257 TGCCACCGACTTTTGTGGGCTTTGAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
*
428289 TGCCACCGACTTGTGTGGGCTTTGGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
*
428321 TGCCACCGACTTGTGTGGGCTTTGGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
428353 TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
*
428385 TGCCACCGACTTGTATGGGCTTTGAAAAG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAG
428414 AAGGTGCCAT
Statistics
Matches: 200, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
31 2 0.01
32 154 0.77
33 43 0.22
34 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
Found at i:428451 original size:33 final size:33
Alignment explanation
Indices: 428414--428886 Score: 395
Period size: 34 Copynumber: 14.7 Consensus size: 33
428404 CTTTGAAAAG
* * *
428414 AAGGTGCCATGGAGTCGTGGACTTAAAAGGAAC
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
428447 AAGGTGCCAC-GAGGTTGTGGACTTTAAAAGGGAAA
1 AAGGTGCCACGGA-GTTGTGGAC-TTAAAA-GGAAA
*
428482 AAGAGTGCCACGGAGTTGTGGGCTTTAAAA-G---
1 AAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAAA
* *
428513 --GGTGCCACAGAGTTGTGGACTTAGAAGGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
* *
428544 AAGAGTGCCACAGAGTTGTGGGCTTTAAAA-GAAA
1 AAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAAA
* * *
428578 AAGGTGCCACAGAATTGTGGACTTAGAAGGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
*
428611 AAGAGTGCCACGGAGTTGTGGGCTTAAAAGG---
1 AAG-GTGCCACGGAGTTGTGGACTTAAAAGGAAA
* * * *
428642 -A--TGTCACGAAGTTATGGACTTAAAAAG-AA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
*
428671 AAGGTGCCACGGAGTTATGGACTTTAAAAGGAAA
1 AAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAAA
* * *
428705 AAGATGCCACAGAGTTGTGGACTTAAAAGGAAC
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
* *
428738 AAGGTGCCACGGAGTTTTGGACTTTAAAGGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
*
428771 AGAGGGTGCCACGGAGTCGTGGACTTAAAA-G---
1 A-A-GGTGCCACGGAGTTGTGGACTTAAAAGGAAA
* *
428802 --GGTGCCACGGAGTTGTGGGCTT-TAA--AAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
*
428830 GA-GTGCCACGGAGTTGTGGACTTTGAAAA-GAAA
1 AAGGTGCCACGGAGTTGTGGAC-TT-AAAAGGAAA
* *
428863 AAGGTGCCACGAAGTCGTGGACTT
1 AAGGTGCCACGGAGTTGTGGACTT
428887 TGAGAAAGGA
Statistics
Matches: 362, Mismatches: 44, Indels: 68
0.76 0.09 0.14
Matches are distributed among these distances:
26 2 0.01
27 46 0.13
28 18 0.05
29 19 0.05
30 4 0.01
32 25 0.07
33 94 0.26
34 95 0.26
35 35 0.10
36 22 0.06
37 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (33 bp):
AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
Found at i:428615 original size:67 final size:67
Alignment explanation
Indices: 428417--428887 Score: 408
Period size: 67 Copynumber: 7.3 Consensus size: 67
428407 TGAAAAGAAG
* * * *
428417 GTGCCATGGAGTCGTGGAC-TTAAAAGGAACAAGGTGCCAC-GAGGTTGTGGACTTTAAAAGGGA
1 GTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAAGGTGCCACAGA-GTTGTGGAC-TTAAAA-GGA
428480 AAAAGA
62 AAAAGA
*
428486 GTGCCACGGAGTTGTGGGCTTTAAAAG-----GGTGCCACAGAGTTGTGGACTTAGAAGGAAAAA
1 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAA
428546 GA
66 GA
* * *
428548 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACAGAATTGTGGACTTAGAAGGAAAAA
1 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAA
428613 GA
66 GA
* * * *
428615 GTGCCACGGAGTTGTGGGC-TTAAAAG-----GATGTCAC-GAAGTTATGGACTTAAAAAG-AAA
1 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACAG-AGTTGTGGACTTAAAAGGAAAA
428672 AG-
65 AGA
* * * *
428674 GTGCCACGGAGTTATGGACTTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTAAAAGGAACA
1 GTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAA
428739 AG-
65 AGA
* * * * *
428741 GTGCCACGGAGTTTTGGACTTTAAAGGAAAAGAGGGTGCCACGGAGTCGTGGACTTAAAA-G---
1 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA-A-GGTGCCACAGAGTTGTGGACTTAAAAGGAAA
428802 --G-
64 AAGA
* *
428803 GTGCCACGGAGTTGTGGGCTTT--AA-AAAGA-GTGCCACGGAGTTGTGGACTTTGAAAA-GAAA
1 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACAGAGTTGTGGAC-TT-AAAAGGAAA
428863 AAG-
64 AAGA
* * *
428866 GTGCCACGAAGTCGTGGACTTT
1 GTGCCACGGAGTTGTGGGCTTT
428888 GAGAAAGGAT
Statistics
Matches: 344, Mismatches: 32, Indels: 58
0.79 0.07 0.13
Matches are distributed among these distances:
56 18 0.05
57 2 0.01
58 6 0.02
59 20 0.06
60 13 0.04
61 21 0.06
62 56 0.16
63 25 0.07
64 17 0.05
65 2 0.01
66 35 0.10
67 83 0.24
68 23 0.07
69 17 0.05
70 6 0.02
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (67 bp):
GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAA
GA
Found at i:428719 original size:160 final size:162
Alignment explanation
Indices: 428508--428886 Score: 465
Period size: 160 Copynumber: 2.4 Consensus size: 162
428498 TGTGGGCTTT
* * *
428508 AAAAGGGTGCCACAGAGTTGTGGAC-TTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAA
1 AAAA-GGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA-TGCCACAGAGTTGTGGAC-TTAA
* *
428572 AA-GAAAAAGGTGCCACAGAATTGTGGAC-TTAGAAGGAAAA-AGAGTGCCACGGAGTTGTGGGC
63 AAGGAAAAAGGTGCCACAGAATTGTGGACTTTA-AAGGAAAAGAGAGTGCCACGGAGTCGTGGAC
*
428634 TTAAAAGGATGTCACGAAGTTATGGAC-TTAAAAAG
127 TTAAAAGGATGCCACGAAGTTATGGACTTTAAAAAG
*
428669 AAAAGGTGCCACGGAGTTATGGACTTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTAAAAG
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTAAAAG
* * * * *
428734 GAACAAGGTGCCACGGAGTTTTGGACTTTAAAGGAAAAGAGGGTGCCACGGAGTCGTGGACTTAA
66 GAAAAAGGTGCCACAGAATTGTGGACTTTAAAGGAAAAGAGAGTGCCACGGAGTCGTGGACTTAA
* * * *
428799 AAGGGTGCCACGGAGTTGTGGGCTTTAAAAAG
131 AAGGATGCCACGAAGTTATGGACTTTAAAAAG
* *
428831 ---A-GTGCCACGGAGTTGTGGACTTTGAAAA-GAAAAAGGTGCCAC-GAAGTCGTGGACTT
1 AAAAGGTGCCACGGAGTTGTGGACTTT-AAAAGGAAAAAGATGCCACAG-AGTTGTGGACTT
428887 TGAGAAAGGA
Statistics
Matches: 192, Mismatches: 19, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
157 1 0.01
158 45 0.23
159 11 0.06
160 65 0.34
161 62 0.32
162 8 0.04
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (162 bp):
AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTAAAAG
GAAAAAGGTGCCACAGAATTGTGGACTTTAAAGGAAAAGAGAGTGCCACGGAGTCGTGGACTTAA
AAGGATGCCACGAAGTTATGGACTTTAAAAAG
Found at i:428808 original size:27 final size:28
Alignment explanation
Indices: 428768--428852 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 28
428758 ACTTTAAAGG
*
428768 AAAAGAGGGTGCCACGGAGTCGTGGACTT
1 AAAA-AGGGTGCCACGGAGTTGTGGACTT
*
428797 -AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGGTGCCACGGAGTTGTGGAC-TT
*
428825 AAAAAGAGTGCCACGGAGTTGTGGACTT
1 AAAAAGGGTGCCACGGAGTTGTGGACTT
428853 TGAAAAGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 20 0.40
28 7 0.14
29 23 0.46
ACGTcount: A:0.27, C:0.15, G:0.36, T:0.21
Consensus pattern (28 bp):
AAAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:428887 original size:34 final size:36
Alignment explanation
Indices: 428825--428894 Score: 108
Period size: 34 Copynumber: 2.0 Consensus size: 36
428815 TGTGGGCTTT
* *
428825 AAAAAGAGTGCCACGGAGTTGTGGACTTTGA-AAAG
1 AAAAAGAGTGCCACGAAGTCGTGGACTTTGAGAAAG
428860 AAAAAG-GTGCCACGAAGTCGTGGACTTTGAGAAAG
1 AAAAAGAGTGCCACGAAGTCGTGGACTTTGAGAAAG
428895 GATTTGAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 22 0.69
35 10 0.31
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (36 bp):
AAAAAGAGTGCCACGAAGTCGTGGACTTTGAGAAAG
Found at i:430228 original size:33 final size:32
Alignment explanation
Indices: 430191--430261 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 32
430181 CATTTGCACC
*
430191 TTTTTTTTGTGT-TTTATTTTTTGTTTTGTTTGT
1 TTTTTTTTGTGTGTGTATTTTTT-TTTTGTTT-T
*
430224 TTTTTTTTGTGTGTGTGTTTTTTTTTTGTTTT
1 TTTTTTTTGTGTGTGTATTTTTTTTTTGTTTT
430256 TTTTTT
1 TTTTTT
430262 CATCATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 7 0.20
33 20 0.57
34 8 0.23
ACGTcount: A:0.01, C:0.00, G:0.15, T:0.83
Consensus pattern (32 bp):
TTTTTTTTGTGTGTGTATTTTTTTTTTGTTTT
Found at i:435045 original size:27 final size:27
Alignment explanation
Indices: 435007--435076 Score: 140
Period size: 27 Copynumber: 2.6 Consensus size: 27
434997 GTTGAAAACA
435007 GGGTTGGAGTGTCCCCTCGGAGGAATG
1 GGGTTGGAGTGTCCCCTCGGAGGAATG
435034 GGGTTGGAGTGTCCCCTCGGAGGAATG
1 GGGTTGGAGTGTCCCCTCGGAGGAATG
435061 GGGTTGGAGTGTCCCC
1 GGGTTGGAGTGTCCCC
435077 GGTGAATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.13, C:0.20, G:0.44, T:0.23
Consensus pattern (27 bp):
GGGTTGGAGTGTCCCCTCGGAGGAATG
Found at i:437695 original size:32 final size:33
Alignment explanation
Indices: 437635--437703 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
437625 TTCAACGATT
*
437635 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCAATACATAAAGTGTTGTATCGATACAA
*
437668 TGTATCAATACAT-AAGTTTTGTATCGATACAA
1 TGTATCAATACATAAAGTGTTGTATCGATACAA
437700 TGTA
1 TGTA
437704 AGCTACTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 22 0.65
33 12 0.35
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (33 bp):
TGTATCAATACATAAAGTGTTGTATCGATACAA
Found at i:437759 original size:34 final size:35
Alignment explanation
Indices: 437721--437786 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
437711 GCCAAGAAAA
*
437721 TGTATCGATACA-TTACTCAAATTTATCGATACAT
1 TGTATCGATACATTTACTCAAATGTATCGATACAT
437755 TGTATCGATACATTTACTCAAATGTATCGATA
1 TGTATCGATACATTTACTCAAATGTATCGATA
437787 TATGCAGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 12 0.40
35 18 0.60
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.38
Consensus pattern (35 bp):
TGTATCGATACATTTACTCAAATGTATCGATACAT
Found at i:437762 original size:13 final size:13
Alignment explanation
Indices: 437744--437768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
437734 TACTCAAATT
437744 TATCGATACATTG
1 TATCGATACATTG
437757 TATCGATACATT
1 TATCGATACATT
437769 TACTCAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:437838 original size:52 final size:52
Alignment explanation
Indices: 437755--437905 Score: 203
Period size: 52 Copynumber: 2.9 Consensus size: 52
437745 ATCGATACAT
* * * *
437755 TGTATCGATACATTTACTCAAATGTATCGATATATGCAGACACATTTGCCCAGA
1 TGTATCGATACA-CTA-TAAAATGTATCGATACATGCAGACAAATTTGCCCAGA
* *
437809 TGTATCGATAGACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTATAAAATGTATCGATACATGCAGACAAATTTGCCCAGA
* * *
437861 TGTATCGATACATTATGAAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTATAAAATGTATCGATACATGCAGACAAATTT
437906 TCATATTTCG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 75 0.85
53 2 0.02
54 11 0.12
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACACTATAAAATGTATCGATACATGCAGACAAATTTGCCCAGA
Found at i:441873 original size:76 final size:76
Alignment explanation
Indices: 441781--441928 Score: 251
Period size: 76 Copynumber: 1.9 Consensus size: 76
441771 TTACAAAAAA
* *
441781 AAAAAACCTATATTTCTCATATCTCCAAGGCATATAGGTGAGTTAATCTTCCTTGAAAACCCAAA
1 AAAAAACCTATATTTCTCACATCTCCAAGGCATATAGGTCAGTTAATCTTCCTTGAAAACCCAAA
441846 TTTGCATAAAG
66 TTTGCATAAAG
* * *
441857 AAAAAACTTATGTTTCTCACATCTCCGAGGCATATAGGTCAGTTAATCTTCCTTGAAAACCCAAA
1 AAAAAACCTATATTTCTCACATCTCCAAGGCATATAGGTCAGTTAATCTTCCTTGAAAACCCAAA
441922 TTTGCAT
66 TTTGCAT
441929 TTTTACCAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (76 bp):
AAAAAACCTATATTTCTCACATCTCCAAGGCATATAGGTCAGTTAATCTTCCTTGAAAACCCAAA
TTTGCATAAAG
Found at i:445789 original size:12 final size:12
Alignment explanation
Indices: 445769--445810 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
445759 TTTCAAAAAT
*
445769 AAAATAAAATAA
1 AAAAAAAAATAA
445781 AAAAAAAAATAA
1 AAAAAAAAATAA
* *
445793 AAGAAAAAAGAA
1 AAAAAAAAATAA
445805 AAAAAA
1 AAAAAA
445811 TAAACGATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (12 bp):
AAAAAAAAATAA
Found at i:445789 original size:17 final size:17
Alignment explanation
Indices: 445763--445814 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
445753 TCTTATTTTC
*
445763 AAAAATAAAATAAAATA
1 AAAAAAAAAATAAAATA
*
445780 AAAAAAAAAATAAAAGA
1 AAAAAAAAAATAAAATA
*
445797 AAAAAGAAAA-AAAATA
1 AAAAAAAAAATAAAATA
445813 AA
1 AA
445815 CGATGTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.87, C:0.00, G:0.04, T:0.10
Consensus pattern (17 bp):
AAAAAAAAAATAAAATA
Found at i:445789 original size:22 final size:21
Alignment explanation
Indices: 445763--445814 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
445753 TCTTATTTTC
*
445763 AAAAATAAAATAAAATAAAAAA
1 AAAAATAAAAGAAAA-AAAAAA
*
445785 AAAAATAAAAGAAAAAAGAAA
1 AAAAATAAAAGAAAAAAAAAA
445806 AAAAATAAA
1 AAAAATAAA
445815 CGATGTGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 14 0.50
22 14 0.50
ACGTcount: A:0.87, C:0.00, G:0.04, T:0.10
Consensus pattern (21 bp):
AAAAATAAAAGAAAAAAAAAA
Found at i:446572 original size:21 final size:24
Alignment explanation
Indices: 446535--446586 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 24
446525 CTTATAACTC
*
446535 AATTTA-TCTTATATTTT-T-AAT
1 AATTTATTATTATATTTTGTAAAT
446556 AATTTATTATTAT-TTTTGTAAAT
1 AATTTATTATTATATTTTGTAAAT
*
446579 AATATATT
1 AATTTATT
446587 TAAAGTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 10 0.38
22 6 0.23
23 10 0.38
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
AATTTATTATTATATTTTGTAAAT
Found at i:447077 original size:13 final size:13
Alignment explanation
Indices: 447061--447094 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
447051 TAATATTTTT
447061 AAAATTAATTTAA
1 AAAATTAATTTAA
* *
447074 AAAACTATTTTAA
1 AAAATTAATTTAA
447087 AAAATTAA
1 AAAATTAA
447095 ACCCTAGTAT
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAATTAATTTAA
Found at i:447082 original size:25 final size:26
Alignment explanation
Indices: 447033--447094 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
447023 TTATAACTTA
*
447033 ATAAAATTTAATTTAAATTAATATTTT
1 ATAAAA-TTAATTTAAATAAATATTTT
447060 -TAAAATTAATTTAAA-AAACTATTTT
1 ATAAAATTAATTTAAATAAA-TATTTT
*
447085 AAAAAATTAA
1 ATAAAATTAA
447095 ACCCTAGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 2 0.06
25 16 0.52
26 13 0.42
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
ATAAAATTAATTTAAATAAATATTTT
Found at i:448193 original size:20 final size:20
Alignment explanation
Indices: 448147--448193 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
448137 AGTATAATTA
*
448147 TTTTAATATATAAAGATAAT
1 TTTTAAAATATAAAGATAAT
**
448167 TAATAAAATATAAAAGA-AAT
1 TTTTAAAATAT-AAAGATAAT
448187 TTTTAAA
1 TTTTAAA
448194 TAAATAATTA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (20 bp):
TTTTAAAATATAAAGATAAT
Found at i:448596 original size:14 final size:14
Alignment explanation
Indices: 448579--448630 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
448569 GATATTATAT
448579 ATATATAAATTTTG
1 ATATATAAATTTTG
* *
448593 ATATGTTAATAATTTG
1 ATAT-ATAA-ATTTTG
448609 TATTATATAAATTTTG
1 -A-TATATAAATTTTG
448625 ATATAT
1 ATATAT
448631 TCGAATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 9 0.30
15 4 0.13
16 10 0.33
17 4 0.13
18 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (14 bp):
ATATATAAATTTTG
Found at i:453801 original size:23 final size:23
Alignment explanation
Indices: 453763--453826 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
453753 TAAAATTTTT
*
453763 AAAATTTATAAAAAAAATTAA-AAA
1 AAAATTT-TAAAAAATA-TAATAAA
* *
453787 AAATATTTTATAAAATATAATAAT
1 AAA-ATTTTAAAAAATATAATAAA
453811 AAAATTTTAAAAAATA
1 AAAATTTTAAAAAATA
453827 ATGTGACCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 15 0.44
24 15 0.44
25 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AAAATTTTAAAAAATATAATAAA
Found at i:454124 original size:2 final size:2
Alignment explanation
Indices: 454117--454146 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
454107 ATATGCATCA
454117 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
454147 GTGCAAGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:454506 original size:22 final size:22
Alignment explanation
Indices: 454463--454506 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
454453 AAAAAACTAT
*
454463 TTTTATATTAATATCTATATAA
1 TTTTATATTAATATCTAAATAA
*
454485 TTTTATAATTAA-ATTTAAATAA
1 TTTTAT-ATTAATATCTAAATAA
454507 AAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTATATTAATATCTAAATAA
Found at i:454635 original size:2 final size:2
Alignment explanation
Indices: 454628--454672 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
454618 GAACACATAC
*
454628 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
454669 AT AT
1 AT AT
454673 GGGTGAATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:454831 original size:16 final size:16
Alignment explanation
Indices: 454810--454851 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
454800 TCAAGTTTTT
*
454810 TTTTAGATTTCGTTCA
1 TTTTAGATTTCGGTCA
* *
454826 TTTTAGTTTTTGGTCA
1 TTTTAGATTTCGGTCA
454842 TTTTAGATTT
1 TTTTAGATTT
454852 ATTTTGGATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.17, C:0.07, G:0.14, T:0.62
Consensus pattern (16 bp):
TTTTAGATTTCGGTCA
Found at i:455854 original size:33 final size:32
Alignment explanation
Indices: 455811--455872 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
455801 CACACCCAGA
455811 TGTATCGATACATATTGCTTAGTATCGATACAT
1 TGTATCGATACATATT-CTTAGTATCGATACAT
* * *
455844 TGTATTGATACATGTTCTTGGTATCGATA
1 TGTATCGATACATATTCTTAGTATCGATA
455873 TACACTGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.46
33 14 0.54
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTCTTAGTATCGATACAT
Found at i:457570 original size:15 final size:15
Alignment explanation
Indices: 457550--457583 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
457540 TCAACCATCA
*
457550 ATAATGATGATGATG
1 ATAATGATGATGAAG
457565 ATAATGATGATGAAG
1 ATAATGATGATGAAG
457580 ATAA
1 ATAA
457584 CTCAGATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (15 bp):
ATAATGATGATGAAG
Found at i:464051 original size:21 final size:21
Alignment explanation
Indices: 464025--464064 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
464015 GGAGAAAGAA
*
464025 AAATTTTATTAAGAGGGAGAT
1 AAATTTTACTAAGAGGGAGAT
*
464046 AAATTTTACTAAGGGGGAG
1 AAATTTTACTAAGAGGGAG
464065 TTACATATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.28, T:0.30
Consensus pattern (21 bp):
AAATTTTACTAAGAGGGAGAT
Found at i:468410 original size:19 final size:20
Alignment explanation
Indices: 468372--468429 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 20
468362 CACATAATTT
468372 TTTTTCTC-TTCTT-C-TT-
1 TTTTTCTCTTTCTTGCTTTC
468388 TTTTTCTCCTTTC-T-CTTTC
1 TTTTTCT-CTTTCTTGCTTTC
468407 TTTTTCTCTTTCTTGCTTTC
1 TTTTTCTCTTTCTTGCTTTC
468427 TTT
1 TTT
468430 CCTGCCTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
16 7 0.19
17 3 0.08
18 10 0.28
19 8 0.22
20 8 0.22
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTTTCTCTTTCTTGCTTTC
Found at i:468597 original size:16 final size:17
Alignment explanation
Indices: 468568--468603 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
468558 AATATTTTAT
468568 ATTATTATAAATAAAAA
1 ATTATTATAAATAAAAA
468585 ATTATTA-AAATAAAAA
1 ATTATTATAAATAAAAA
468601 ATT
1 ATT
468604 GTTTTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTATTATAAATAAAAA
Found at i:468599 original size:14 final size:16
Alignment explanation
Indices: 468568--468600 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
468558 AATATTTTAT
468568 ATTATTATAAATAAAAA
1 ATTATTATAAAT-AAAA
468585 ATTATTA-AAATAAAA
1 ATTATTATAAATAAAA
468600 A
1 A
468601 ATTGTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 4 0.25
17 7 0.44
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTATTATAAATAAAA
Found at i:473560 original size:69 final size:68
Alignment explanation
Indices: 473475--473623 Score: 217
Period size: 69 Copynumber: 2.2 Consensus size: 68
473465 GGAATGGGGA
473475 TGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGACTTAAATTTTGATAAATTTAAAAACA
1 TGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGACTTAAATTTTGATAAATTT-AAAACA
*
473540 TGGT
65 GGGT
* * * * * **
473544 TGGAGTATCCCTGACAATGATAATTTGGATAAAATAAGATTTAAATTTTGATGAGTTTAAAATGG
1 TGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGACTTAAATTTTGATAAATTTAAAACAG
473609 GGT
66 GGT
473612 TGGAGTATCCCC
1 TGGAGTATCCCC
473624 TCGGAGGAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
68 18 0.25
69 53 0.75
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (68 bp):
TGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGACTTAAATTTTGATAAATTTAAAACAG
GGT
Found at i:473730 original size:97 final size:96
Alignment explanation
Indices: 473574--473849 Score: 374
Period size: 97 Copynumber: 2.9 Consensus size: 96
473564 TAATTTGGAT
*
473574 AAAATAAGATTTAAATTTTGATGAGTTT-AAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGG
1 AAAATAAGATTTAAATTTTGATAAGTTTAAAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGG
473638 TTGGAGTGTCTCCGATAATGACAATTTAACCA
66 TTGGAGTGTC-CCGATAATGACAATTTAACCA
* * * ** *
473670 AAAATAATATTTAAATTTTGATAAGTTTAAAAATGGGGTTAGAGTATCCCCTTGGAGGAATAAGT
1 AAAATAAGATTTAAATTTTGATAAGTTTAAAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGG
*
473735 TTGGAGTGTCCTCGATTATGACAATTTAACCA
66 TTGGAGTGTCC-CGATAATGACAATTTAACCA
* * ** * *
473767 AAAATAAGATTTAAATGTTGATAATTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAAGAATGGGG
1 AAAATAAGATTTAAATTTTGATAAGTTTAAAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGG
* *
473832 TTGGTGTATCCCCGATAA
66 TTGGAGTGT-CCCGATAA
473850 ACAAAATTTT
Statistics
Matches: 154, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
96 27 0.18
97 125 0.81
98 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (96 bp):
AAAATAAGATTTAAATTTTGATAAGTTTAAAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGG
TTGGAGTGTCCCGATAATGACAATTTAACCA
Found at i:474875 original size:14 final size:14
Alignment explanation
Indices: 474856--474883 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
474846 CGTAGAATGA
474856 AGAAAGAAAACATG
1 AGAAAGAAAACATG
474870 AGAAAGAAAACATG
1 AGAAAGAAAACATG
474884 CAATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.21, T:0.07
Consensus pattern (14 bp):
AGAAAGAAAACATG
Found at i:480287 original size:168 final size:166
Alignment explanation
Indices: 480070--480539 Score: 468
Period size: 167 Copynumber: 2.8 Consensus size: 166
480060 GTAGGAAACT
* * * *
480070 AAAAAAAATAAAAATTCATG-AAATAAATTGAAAATTTTAAAACTAATTTAATGGGAGCA-T-AA
1 AAAAAAAATAAAAACTCATGAAAATGAA-TG-AATTTTTAAAACTAATTTAATAGGA--ATTAAA
* ** *
480132 TAAAAATATTAGATGAATTTTAAAAATTTTAAACCGAA-AAAAATCCC-CTCAAAAACATTTATA
62 TAAAAATATTAGATAAATTTTAAAAATTAAAAACC-AAGAAAAATCCCTC-CAAAAACATTTACA
* * * * * *
480195 AAAT-AGAAAACTTGATTTTTTTAAAAATAAGAAAATTTCAAAG
125 AAATAAAAAAATTTG--TATCTTAAAAACAAAAAAATTTCAAAG
* * *
480238 AAAAAAAATTAAAACTCATGAAAATGAATGAATTTTTAAAAAATAATTTAATATGAATTAAATAA
1 AAAAAAAATAAAAACTCATGAAAATGAATGAATTTTT-AAAACTAATTTAATAGGAATTAAATAA
* * *
480303 TAATATTTGATAAATTTTAAAAATTAAAAATCAAGAAAAATCCCTCCAAAAACATTTACAAAATA
65 AAATATTAGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACAAAATA
* *
480368 AAAAAATTTGTATCTTAGAAACAAAAAAATTTCAAGG
130 AAAAAATTTGTATCTTAAAAACAAAAAAATTTCAAAG
*** * **
480405 AAAAAATGGAAAAACTCATGAAAATGGATGAATTTTTGAAAACTAATTTAATATAAATTAAATAA
1 AAAAAAAATAAAAACTCATGAAAATGAATGAATTTTT-AAAACTAATTTAATAGGAATTAAATAA
* ** * * * **
480470 TAATATTTTATAAATTTTAAATATTAAAAACCAAGAAAAATCTCC-CTAAAAATATTTACGGAAT
65 AAATATTAGATAAATTTTAAAAATTAAAAACCAAGAAAAATC-CCTCCAAAAACATTTACAAAAT
480534 AAAAAA
129 AAAAAA
480540 TTTTCTATTT
Statistics
Matches: 257, Mismatches: 37, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
166 1 0.00
167 147 0.57
168 94 0.37
169 15 0.06
ACGTcount: A:0.56, C:0.08, G:0.07, T:0.30
Consensus pattern (166 bp):
AAAAAAAATAAAAACTCATGAAAATGAATGAATTTTTAAAACTAATTTAATAGGAATTAAATAAA
AATATTAGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACAAAATAA
AAAAATTTGTATCTTAAAAACAAAAAAATTTCAAAG
Found at i:480438 original size:167 final size:167
Alignment explanation
Indices: 480130--480539 Score: 493
Period size: 167 Copynumber: 2.4 Consensus size: 167
480120 ATGGGAGCAT
* * * ** *
480130 AATAAAAATATTAGATGAATTTTAAAAATTTTAAACCGAA-AAAAATCCCCTCAAAAACATTTAT
1 AATAATAATATTTGATAAATTTTAAAAATTAAAAACC-AAGAAAAATCCCC-CAAAAACATTTAC
* * * * * **
480194 AAAAT-AGAAAACTTGATTTTTTTAAAAATAAGAAAATTTCAAAGAAAAAAAATTAAAACTCATG
64 AAAATAAAAAAACTTGA-TATCTTAAAAACAAAAAAATTTCAAAGAAAAAAAAGAAAAACTCATG
*
480258 AAAATGAATGAATTTTTAAAAAATAATTTAATATGAATTA
128 AAAATGAATGAATTTTTAAAAAATAATTTAATATAAATTA
*
480298 AATAATAATATTTGATAAATTTTAAAAATTAAAAATCAAGAAAAATCCCTCCAAAAACATTTACA
1 AATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCC-CCAAAAACATTTACA
* * * **
480363 AAATAAAAAAATTTG-TATCTTAGAAACAAAAAAATTTCAAGGAAAAAATGGAAAAACTCATGAA
65 AAATAAAAAAACTTGATATCTTAAAAACAAAAAAATTTCAAAGAAAAAAAAGAAAAACTCATGAA
* * *
480427 AATGGATGAATTTTTGAAAACTAATTTAATATAAATTA
130 AATGAATGAATTTTTAAAAAATAATTTAATATAAATTA
* * * * *
480465 AATAATAATATTTTATAAATTTTAAATATTAAAAACCAAGAAAAATCTCCCTAAAAATATTTACG
1 AATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATC-CCCCAAAAACATTTACA
*
480530 GAATAAAAAA
65 AAATAAAAAA
480540 TTTTCTATTT
Statistics
Matches: 208, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
167 140 0.67
168 59 0.28
169 9 0.04
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (167 bp):
AATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCAAAAACATTTACAA
AATAAAAAAACTTGATATCTTAAAAACAAAAAAATTTCAAAGAAAAAAAAGAAAAACTCATGAAA
ATGAATGAATTTTTAAAAAATAATTTAATATAAATTA
Found at i:481708 original size:85 final size:85
Alignment explanation
Indices: 481593--481906 Score: 373
Period size: 85 Copynumber: 3.7 Consensus size: 85
481583 AACCGACAGA
* ** *
481593 TAAACAAGGGATACAAAAGTTGATCGAGATTAAACCGACAAGTCAACAAATGATAAAAGGATTTA
1 TAAACAAAGGATACAACGGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTTA
* *
481658 CTTAGGACTAAGCCGATAGG
66 CTTAGGACTAAGCTGATAAG
* *
481678 TAGACAAAGGATA-AAGCGGTTGATCAAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTT
1 TAAACAAAGGATACAA-CGGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTT
* *
481742 ACTTGGGACTGAA-TTGATAAG
65 ACTTAGGACT-AAGCTGATAAG
* * *
481763 TAAACAAAGAATACAACAGTTGATCGAGATTAAACCGATAAGTCAACAAAGGATAAAAGGATTTA
1 TAAACAAAGGATACAACGGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTTA
* * *
481828 C-TAGGGGCTGAGCTGACAAG
66 CTTA-GGACTAAGCTGATAAG
* * * * * *
481848 TAAACAAAGGATATAAAAGGTTAACCGAGATTGAACTGACAAGTCAACAAAGGATAAAA
1 TAAACAAAGGATA-CAACGGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAA
481907 AACGATTCTT
Statistics
Matches: 194, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
84 4 0.02
85 149 0.77
86 41 0.21
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.19
Consensus pattern (85 bp):
TAAACAAAGGATACAACGGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTTA
CTTAGGACTAAGCTGATAAG
Found at i:481728 original size:42 final size:41
Alignment explanation
Indices: 481611--481734 Score: 115
Period size: 42 Copynumber: 3.0 Consensus size: 41
481601 GGATACAAAA
* *
481611 GTTGATCGAGATTAAACCGACAAGTCAACAAATGATAAAAGG
1 GTTGATCAAGATTAAACCGACAAGTCAACAAAGGAT-AAAGG
* * * * * * * *
481653 ATTTACTTAGGACTAAGCCGATAGGT-AGACAAAGGATAAAGCG
1 GTTGA-TCAAGATTAAACCGACAAGTCA-ACAAAGGATAAAG-G
481696 GTTGATCAAGATTAAACCGACAAGTCAACAAAGGATAAA
1 GTTGATCAAGATTAAACCGACAAGTCAACAAAGGATAAA
481735 AGGATTTACT
Statistics
Matches: 60, Mismatches: 18, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
42 34 0.57
43 26 0.43
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (41 bp):
GTTGATCAAGATTAAACCGACAAGTCAACAAAGGATAAAGG
Found at i:481857 original size:170 final size:171
Alignment explanation
Indices: 481593--481906 Score: 443
Period size: 170 Copynumber: 1.8 Consensus size: 171
481583 AACCGACAGA
* * *
481593 TAAACAAGGGATACAAAAGTTGATCGAGATTAAACCGACAAGTCAACAAATGATAAAAGGATTTA
1 TAAACAAAGAATACAAAAGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTTA
* * * ** * *
481658 CTTAGGACTAAGCCGATAGGTAGACAAAGGATA-AAGCGGTTGATCAAGATTAAACCGACAAGTC
66 CTTAGGACTAAGCCGACAAGTAAACAAAGGATATAAAAGGTTAACCAAGATTAAACCGACAAGTC
481722 AACAAAGGATAAAAGGATTTACTTGGGACTGAATTGATAAG
131 AACAAAGGATAAAAGGATTTACTTGGGACTGAATTGATAAG
* *
481763 TAAACAAAGAATACAACAGTTGATCGAGATTAAACCGATAAGTCAACAAAGGATAAAAGGATTTA
1 TAAACAAAGAATACAAAAGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTTA
* * * * * *
481828 C-TAGGGGCTGAGCTGACAAGTAAACAAAGGATATAAAAGGTTAACCGAGATTGAACTGACAAGT
66 CTTA-GGACTAAGCCGACAAGTAAACAAAGGATATAAAAGGTTAACCAAGATTAAACCGACAAGT
481892 CAACAAAGGATAAAA
130 CAACAAAGGATAAAA
481907 AACGATTCTT
Statistics
Matches: 124, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
169 2 0.02
170 84 0.68
171 38 0.31
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.19
Consensus pattern (171 bp):
TAAACAAAGAATACAAAAGTTGATCGAGATTAAACCGACAAGTCAACAAAGGATAAAAGGATTTA
CTTAGGACTAAGCCGACAAGTAAACAAAGGATATAAAAGGTTAACCAAGATTAAACCGACAAGTC
AACAAAGGATAAAAGGATTTACTTGGGACTGAATTGATAAG
Found at i:482136 original size:47 final size:47
Alignment explanation
Indices: 481973--482177 Score: 180
Period size: 47 Copynumber: 4.4 Consensus size: 47
481963 CGAATGAGGA
* * * * * *
481973 TGAAAAGAGTTTGACAAGG-ACTAAAGCCAATACAGTCAAATGAAAG
1 TGAAAAAAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAAGG
* * * * * * * *
482019 TGAAAAAAGTTTGACCAGGTCCTAATGCGAGTATAATCAAATGAGGG
1 TGAAAAAAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAAGG
* *
482066 TGGAAAGAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAAGG
1 TGAAAAAAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAAGG
* * ** * * *
482113 TGAAAAGAGTTTGAGTAAATCCTAACGCTAATATAGTCAAAC-AATGA
1 TGAAAAAAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAA-GG
482160 TGAAAAAAGTTTGACTAG
1 TGAAAAAAGTTTGACTAG
482178 ATACAGTTAA
Statistics
Matches: 127, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
46 19 0.15
47 108 0.85
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (47 bp):
TGAAAAAAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAAGG
Found at i:482136 original size:94 final size:93
Alignment explanation
Indices: 481965--482174 Score: 231
Period size: 94 Copynumber: 2.2 Consensus size: 93
481955 CATCATGTCG
*
481965 AATGAGGATGAAAAGAGTTTGACAAGGACTAAAGCCAATACAGTCAAATGAAAGTGAAAAAAGTT
1 AATGAGGATGAAAAGAGTTTGACAAGGACTAAAGCCAATACAGTCAAACGAAAGTGAAAAAAGTT
**
482030 TGACCAGGTCCTAATGCGAGTATAATCA
66 TGACCAAATCCTAATGCGAGTATAATCA
* * * * * * *
482058 AATGAGGGTGGAAAGAGTTTGACTAGGTCCTAACGCCAATACAGTCAAACGAAGGTGAAAAGAGT
1 AATGAGGATGAAAAGAGTTTGACAAGG-ACTAAAGCCAATACAGTCAAACGAAAGTGAAAAAAGT
** * * * *
482123 TTGAGTAAATCCTAACGCTAATATAGTCA
65 TTGACCAAATCCTAATGCGAGTATAATCA
** * *
482152 AACAATGATGAAAAAAGTTTGAC
1 AATGAGGATGAAAAGAGTTTGAC
482175 TAGATACAGT
Statistics
Matches: 94, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
93 24 0.26
94 70 0.74
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.21
Consensus pattern (93 bp):
AATGAGGATGAAAAGAGTTTGACAAGGACTAAAGCCAATACAGTCAAACGAAAGTGAAAAAAGTT
TGACCAAATCCTAATGCGAGTATAATCA
Found at i:482216 original size:36 final size:35
Alignment explanation
Indices: 482147--482343 Score: 165
Period size: 35 Copynumber: 5.8 Consensus size: 35
482137 ACGCTAATAT
** * *
482147 AGTCAAACAATGATGAAAAAAGTTTGACTAGATAC
1 AGTCAAACAATGATGGGAAGAGTTTGACCAGATAC
* *
482182 AGTTAAACAATGATGGGGGAGAGTTTGACCAGATAC
1 AGTCAAACAATGAT-GGGAAGAGTTTGACCAGATAC
** * * *
482218 AGTCAAATGATTAT-GGACAGAGTTTGATCAGATAT
1 AGTCAAACAATGATGGGA-AGAGTTTGACCAGATAC
*
482253 AGTCAAACAATGATTGGAAGAGTTTGACCAG----
1 AGTCAAACAATGATGGGAAGAGTTTGACCAGATAC
*
482284 A-T-AAACAATGATGGAAAGAGTTTGACCAGATAC
1 AGTCAAACAATGATGGGAAGAGTTTGACCAGATAC
* * * **
482317 AATCAAATAAGGATGAAAAGAGTTTGA
1 AGTCAAACAATGATGGGAAGAGTTTGA
482344 TGAAGAATGA
Statistics
Matches: 131, Mismatches: 22, Indels: 18
0.77 0.13 0.11
Matches are distributed among these distances:
29 25 0.19
30 1 0.01
31 1 0.01
33 1 0.01
34 3 0.02
35 71 0.54
36 29 0.22
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.24
Consensus pattern (35 bp):
AGTCAAACAATGATGGGAAGAGTTTGACCAGATAC
Found at i:482302 original size:29 final size:29
Alignment explanation
Indices: 482257--482315 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 29
482247 AGATATAGTC
482257 AAACAATGATTGGAAGAGTTTGACCAGAT
1 AAACAATGATTGGAAGAGTTTGACCAGAT
482286 AAACAATGA-TGGAAAGAGTTTGACCAGAT
1 AAACAATGATTGG-AAGAGTTTGACCAGAT
482315 A
1 A
482316 CAATCAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 3 0.10
29 26 0.90
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (29 bp):
AAACAATGATTGGAAGAGTTTGACCAGAT
Found at i:489074 original size:11 final size:11
Alignment explanation
Indices: 489058--489097 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
489048 TTGTCTTAAA
*
489058 TTTTCTTTTTT
1 TTTTCTCTTTT
489069 TTTTCTCTTTT
1 TTTTCTCTTTT
*
489080 TTTCCTCTTTT
1 TTTTCTCTTTT
489091 TTTTCTC
1 TTTTCTC
489098 ACTCACTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTCTCTTTT
Found at i:490789 original size:18 final size:19
Alignment explanation
Indices: 490758--490795 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
490748 GAAATATCTC
490758 AGAAAAATCATTAAAAATA
1 AGAAAAATCATTAAAAATA
490777 AGAAAAATC-TTAAAAATA
1 AGAAAAATCATTAAAAATA
490795 A
1 A
490796 AAGTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (19 bp):
AGAAAAATCATTAAAAATA
Found at i:494985 original size:20 final size:21
Alignment explanation
Indices: 494962--495005 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
494952 ATGTGTCAGC
* *
494962 ACATAAGTG-AATGTATCGAT
1 ACATAACTGAAATGTATCAAT
*
494982 ACATATCTGAAATGTATCAAT
1 ACATAACTGAAATGTATCAAT
495003 ACA
1 ACA
495006 AGACCATGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (21 bp):
ACATAACTGAAATGTATCAAT
Found at i:497690 original size:80 final size:78
Alignment explanation
Indices: 497480--497782 Score: 194
Period size: 79 Copynumber: 3.8 Consensus size: 78
497470 TTTTGAAAGA
* * * * * * * *
497480 ATACTCCAACCTCATTTTTATTTCCAAAATATCAAAATTTTCACCATCGGGAATACTCCAACC-C
1 ATACTCTAACCCCATTTTCACTTCCAAAACATC-AATTTTTTACCAT-GGGGATACTCCAACCAC
* * ** *
497544 ATCATTTCTGAGGGG
64 ACCATCTCAAAAGGG
* * * * * * * * *
497559 ATATTCCAACTCCGTTTTTACTTCCAAAATATCAAAATTTTCACCATTGGGGATACTCCAACCCC
1 ATACTCTAACCCCATTTTCACTTCCAAAACATC-AATTTTTTACCA-TGGGGATACTCCAACCAC
* *
497624 GCCATCTCCAAAGGG
64 ACCATCTCAAAAGGG
** * * **
497639 ATACTCTAACCCCATTTTGGCTTCCAAAAACATTGAATTTTTTACCATGGGGTATACTCTAAATA
1 ATACTCTAACCCCATTTTCACTTCC-AAAACA-TCAATTTTTTACCATGGGG-ATACTCCAACCA
**
497704 CATTATCTCAAAAGGG
63 CACCATCTCAAAAGGG
* * * *
497720 ATACTCTAACCCCGTTTTCACTTGCAAAATATCAATTTTTTCACCATCGAGGATACTCCAACC
1 ATACTCTAACCCCATTTTCACTTCCAAAACATCAATTTTTT-ACCAT-GGGGATACTCCAACC
497783 TCATTTTCAC
Statistics
Matches: 177, Mismatches: 40, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
79 64 0.36
80 53 0.30
81 59 0.33
82 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (78 bp):
ATACTCTAACCCCATTTTCACTTCCAAAACATCAATTTTTTACCATGGGGATACTCCAACCACAC
CATCTCAAAAGGG
Found at i:497790 original size:52 final size:52
Alignment explanation
Indices: 497718--497837 Score: 170
Period size: 52 Copynumber: 2.3 Consensus size: 52
497708 ATCTCAAAAG
* *
497718 GGATACTCTAACCCCGTTTTCACTTGCAAAATATC-AATTTTTTCACCATCGA
1 GGATACTCCAACCCCATTTTCACTTGCAAAATATCGAA-TTTTTCACCATCGA
* * *
497770 GGATACTCCAACCTCATTTTCACTTTCAAAATATCGAATTTTTCACCATTGA
1 GGATACTCCAACCCCATTTTCACTTGCAAAATATCGAATTTTTCACCATCGA
*
497822 GGATACTTCAACCCCA
1 GGATACTCCAACCCCA
497838 CCATCTCCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 58 0.97
53 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (52 bp):
GGATACTCCAACCCCATTTTCACTTGCAAAATATCGAATTTTTCACCATCGA
Found at i:497856 original size:80 final size:80
Alignment explanation
Indices: 497768--498074 Score: 322
Period size: 80 Copynumber: 3.8 Consensus size: 80
497758 TTTCACCATC
*
497768 GAGGATACTCCAACCTCATTTTCACTTTCAAAATATCGAATTTTTCACCATTGAGGATACTTCAA
1 GAGGATACTCCAACCTCATTTTCACTTTCAAAATATCGAATTTTTCACCATTGAGGATACTCCAA
* *
497833 CCCCACCATCTCCAA
66 CCCCATCATCTCAAA
* * * *
497848 GAGGATACTCTAATCC-CGTTTTTACTTTCAAAAATATCGAATTTTTCACCA-TCAGAGATACTC
1 GAGGATACTCCAA-CCTCATTTTCACTTTC-AAAATATCGAATTTTTCACCATTGAG-GATACTC
*
497911 CAACCCCATCATCTTAAA
63 CAACCCCATCATCTCAAA
* * * * * *
497929 GA-GATACTCCAACCCCATTTT--CTTTCCAAAATATCAAAATTTTTTACCATCGAGGATATTTC
1 GAGGATACTCCAACCTCATTTTCACTTT-CAAAATATC-GAATTTTTCACCATTGAGGATACTCC
* *
497991 AACCCCATTATCTGAAA
64 AACCCCATCATCTCAAA
* * * *
498008 GGGGATACTCCAACCTCGTTTTCACTTTTAAAATAT-TAATTTTTTCACCATTG-GGAATACTCC
1 GAGGATACTCCAACCTCATTTTCACTTTCAAAATATCGAA-TTTTTCACCATTGAGG-ATACTCC
498071 AACC
64 AACC
498075 TCGTCAATTC
Statistics
Matches: 188, Mismatches: 27, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
78 12 0.06
79 40 0.21
80 79 0.42
81 53 0.28
82 4 0.02
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (80 bp):
GAGGATACTCCAACCTCATTTTCACTTTCAAAATATCGAATTTTTCACCATTGAGGATACTCCAA
CCCCATCATCTCAAA
Found at i:497937 original size:160 final size:159
Alignment explanation
Indices: 497771--498058 Score: 377
Period size: 160 Copynumber: 1.8 Consensus size: 159
497761 CACCATCGAG
* * *
497771 GATACTCCAACCTCATTTTCACTTT-CAAAATATC-GAATTTTTCACCATTGAGGATACTTCAAC
1 GATACTCCAACCCCATTTT--CTTTCCAAAATATCAAAATTTTTCACCATCGAGGATACTTCAAC
* * *
497834 CCCACCATCTCCAAGAGGATACTCTAATCC-CGTTTTTACTTTCAAAAATATCGAA-TTTTTCAC
64 CCCACCATCTCAAAGAGGATACTCCAA-CCTCGTTTTCACTTT-AAAAATAT-GAATTTTTTCAC
497897 CATCAGAGATACTCCAACCCCATCATCTTAAAGA
126 CATCAGAGATACTCCAACCCCATCATCTTAAAGA
* *
497931 GATACTCCAACCCCATTTTCTTTCCAAAATATCAAAATTTTTTACCATCGAGGATATTTCAACCC
1 GATACTCCAACCCCATTTTCTTTCCAAAATATCAAAATTTTTCACCATCGAGGATACTTCAACCC
** * * * *
497996 CATTATCTGAAAGGGGATACTCCAACCTCGTTTTCACTTTTAAAATATTAATTTTTTCACCAT
66 CACCATCTCAAAGAGGATACTCCAACCTCGTTTTCACTTTAAAAATATGAATTTTTTCACCAT
498059 TGGGAATACT
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
158 6 0.05
159 29 0.26
160 75 0.68
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (159 bp):
GATACTCCAACCCCATTTTCTTTCCAAAATATCAAAATTTTTCACCATCGAGGATACTTCAACCC
CACCATCTCAAAGAGGATACTCCAACCTCGTTTTCACTTTAAAAATATGAATTTTTTCACCATCA
GAGATACTCCAACCCCATCATCTTAAAGA
Found at i:497972 original size:213 final size:212
Alignment explanation
Indices: 497573--497986 Score: 503
Period size: 213 Copynumber: 1.9 Consensus size: 212
497563 TCCAACTCCG
* * *
497573 TTTTTACTTCCAAAATATCAAAATTTTCACCATTGGGGATACTCCAACCCCGCCATCTCCAAAGG
1 TTTTCACTTCCAAAATATCAAAATTTTCACCATTGAGGATACTCCAACCCCACCATCTCCAAAGG
* * * * * * *
497638 GATACTCTAACCCCATTTTGGCTTCCAAAAACATTGAATTTTTTACCATGGGGTATACTCTAAAT
66 GATACTCTAACCCCATTTTGACTTCCAAAAACATCGAATTTTTCACCATAGAGTATACTCCAAAC
* * * * *
497703 ACATTATCTCAAAAGGGATACTCTAACCCCGTTTTCACTTGCAAAATATCAATTTTTTCACCATC
131 ACATCATCTCAAAAGAGATACTCCAACCCCATTTTCACTTCCAAAATATCAATTTTTT-ACCATC
497768 GAGGATACTCCAACCTCA
195 GAGGATACTCCAACCTCA
* * * *
497786 TTTTCACTTTCAAAATATCGAATTTTTCACCATTGAGGATACTTCAACCCCACCATCTCC-AAGA
1 TTTTCACTTCCAAAATATCAAAATTTTCACCATTGAGGATACTCCAACCCCACCATCTCCAAAG-
* * * * *
497850 GGATACTCTAATCCCGTTTTTACTTTCAAAAATATCGAATTTTTCACCATCAGAG-ATACTCCAA
65 GGATACTCTAACCCCATTTTGACTTCCAAAAACATCGAATTTTTCACCAT-AGAGTATACTCCAA
* * * *
497914 CCCCATCATCT-TAAAGAGATACTCCAACCCCATTTTC-TTTCCAAAATATCAAAATTTTTTACC
129 ACACATCATCTCAAAAGAGATACTCCAACCCCATTTTCACTTCCAAAATATC--AATTTTTTACC
497977 ATCGAGGATA
192 ATCGAGGATA
497987 TTTCAACCCC
Statistics
Matches: 169, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
211 11 0.07
212 38 0.22
213 118 0.70
214 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (212 bp):
TTTTCACTTCCAAAATATCAAAATTTTCACCATTGAGGATACTCCAACCCCACCATCTCCAAAGG
GATACTCTAACCCCATTTTGACTTCCAAAAACATCGAATTTTTCACCATAGAGTATACTCCAAAC
ACATCATCTCAAAAGAGATACTCCAACCCCATTTTCACTTCCAAAATATCAATTTTTTACCATCG
AGGATACTCCAACCTCA
Found at i:498015 original size:292 final size:290
Alignment explanation
Indices: 497478--498076 Score: 685
Period size: 292 Copynumber: 2.1 Consensus size: 290
497468 ACTTTTGAAA
*
497478 GAATACTCCAACCTCATTTTTATTTCCAAAATATCAAAATTTTCACCATCGGGAATACTCCAACC
1 GAATACTCCAACCTCATTTTCATTTCCAAAATATCAAAATTTTCACCATCGGGAATACTCCAACC
* * ** * * * **
497543 CATCATTTCTGAGGGGATATTCCAACTCCGTTTTTACTTCCAAAATATCAAAATTTTCACCATTG
66 CACCATCTCCAAGAGGATACTCCAACTCCGTTTTTACTTCAAAAATATCAAAATTTTCACCATCA
* * * *
497608 GGGATACTCCAACCCCGCCATCTCCAAAGGGATACTCTAACCCCATTTTGGCTTCCAAAAACATT
131 GAGATACTCCAACCCCACCATCTCCAAAGAGATACTCCAACCCCATTTT-GCTTCCAAAAACA-T
* * * *
497673 GAATTTTTTACCATGGGGTATACTCTAAATACATTATCTCAAAAGGGATACTCTAACCCCGTTTT
194 AAATTTTTTACCATGGGATATACTCTAAACACATTATCTCAAAAGGGATACTCCAACCCCGTTTT
497738 CACTTGCAAAATATCAATTTTTTCACCATCGAG
259 CACTTGCAAAATATCAATTTTTTCACCATCG-G
* * * *
497771 G-ATACTCCAACCTCATTTTCACTTT-CAAAATATCGAATTTTTCACCATTGAGG-ATACTTCAA
1 GAATACTCCAACCTCATTTTCA-TTTCCAAAATATCAAAATTTTCACCATCG-GGAATACTCCAA
* * *
497833 CCCCACCATCTCCAAGAGGATACTCTAA-TCCCGTTTTTACTTTCAAAAATATCGAATTTTTCAC
64 -CCCACCATCTCCAAGAGGATACTCCAACT-CCGTTTTTAC-TTCAAAAATATCAAAATTTTCAC
* *
497897 CATCAGAGATACTCCAACCCCATCATCT-TAAAGAGATACTCCAACCCCATTTT-CTTTCCAAAA
126 CATCAGAGATACTCCAACCCCACCATCTCCAAAGAGATACTCCAACCCCATTTTGC-TTCCAAAA
* * * * *
497960 TATCA-AAATTTTTTACCATCGAGGATAT-TTC-AACCCCATTATCTGAAAGGGGATACTCCAAC
190 -A-CATAAATTTTTTACCAT-G-GGATATACTCTAAACACATTATCTCAAAAGGGATACTCCAAC
* ** * *
498022 CTCGTTTTCACTTTTAAAATATTAATTTTTTCACCATTGG
251 CCCGTTTTCACTTGCAAAATATCAATTTTTTCACCATCGG
498062 GAATACTCCAACCTC
1 GAATACTCCAACCTC
498077 GTCAATTCCG
Statistics
Matches: 258, Mismatches: 37, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
291 3 0.01
292 143 0.55
293 62 0.24
294 50 0.19
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (290 bp):
GAATACTCCAACCTCATTTTCATTTCCAAAATATCAAAATTTTCACCATCGGGAATACTCCAACC
CACCATCTCCAAGAGGATACTCCAACTCCGTTTTTACTTCAAAAATATCAAAATTTTCACCATCA
GAGATACTCCAACCCCACCATCTCCAAAGAGATACTCCAACCCCATTTTGCTTCCAAAAACATAA
ATTTTTTACCATGGGATATACTCTAAACACATTATCTCAAAAGGGATACTCCAACCCCGTTTTCA
CTTGCAAAATATCAATTTTTTCACCATCGG
Found at i:498873 original size:6 final size:6
Alignment explanation
Indices: 498849--498898 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
498839 ATATTTAAAA
* *
498849 TAATA- TAATAT AGTAATAT TAATAT TAATAT TAATAT TATTAT TACTAT
1 TAATAT TAATAT --TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT
498898 T
1 T
498899 TAAAAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
5 5 0.12
6 29 0.73
8 6 0.15
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (6 bp):
TAATAT
Found at i:499042 original size:3 final size:3
Alignment explanation
Indices: 499034--499076 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
499024 GTCGTAGCAG
499034 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
499077 GATGATGGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:499843 original size:23 final size:23
Alignment explanation
Indices: 499813--499858 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
499803 TAAATTATTG
499813 ATATATTAAATTT-ATATATAATA
1 ATATATTAAATTTAAT-TATAATA
499836 ATATATTAAATTTAATTATAATA
1 ATATATTAAATTTAATTATAATA
499859 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATATTAAATTTAATTATAATA
Found at i:500222 original size:12 final size:12
Alignment explanation
Indices: 500207--500241 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
500197 AAATTTAAAT
500207 TAAAAAATTTGA
1 TAAAAAATTTGA
*
500219 TAAAAAATGTGA
1 TAAAAAATTTGA
500231 TATAAAAATTT
1 TA-AAAAATTT
500242 TTAAGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (12 bp):
TAAAAAATTTGA
Found at i:500304 original size:15 final size:17
Alignment explanation
Indices: 500274--500312 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
500264 AGTTAACACG
500274 TTAAAAAAATATATA-T
1 TTAAAAAAATATATATT
*
500290 TTAAAATAATA-ATATT
1 TTAAAAAAATATATATT
500306 TTAAAAA
1 TTAAAAA
500313 TTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAAAATATATATT
Found at i:504969 original size:2 final size:2
Alignment explanation
Indices: 504962--504993 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
504952 TCCATAAATC
504962 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
504994 TGCTACAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:506828 original size:16 final size:16
Alignment explanation
Indices: 506792--506840 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
506782 GGTAAATAAT
506792 TATAATATGATACAAA
1 TATAATATGATACAAA
*
506808 AATAATATGA-ACACAA
1 TATAATATGATACA-AA
*
506824 TATAA-AT-AGACAAA
1 TATAATATGATACAAA
506838 TAT
1 TAT
506841 TTCAAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 6 0.21
15 8 0.28
16 15 0.52
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (16 bp):
TATAATATGATACAAA
Found at i:507076 original size:10 final size:10
Alignment explanation
Indices: 507063--507139 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
507053 ATGAATATAC
507063 AAATATATTA
1 AAATATATTA
*
507073 AAATTTATGTA
1 AAATATAT-TA
*
507084 AAATAAATTA
1 AAATATATTA
* **
507094 TTAACGTATTA
1 -AAATATATTA
*
507105 AAATTTA-TA
1 AAATATATTA
507114 TAAATATA-TA
1 -AAATATATTA
507124 AAATATATT-
1 AAATATATTA
507133 AAATATA
1 AAATATA
507140 AATATGAAAA
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
9 16 0.31
10 22 0.42
11 14 0.27
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (10 bp):
AAATATATTA
Found at i:507137 original size:18 final size:19
Alignment explanation
Indices: 507103--507176 Score: 67
Period size: 15 Copynumber: 4.4 Consensus size: 19
507093 ATTAACGTAT
*
507103 TAAAATTTATATAAATATA
1 TAAAATATATATAAATATA
507122 TAAAATATAT-T-AA-ATA
1 TAAAATATATATAAATATA
*
507138 T-AAATAT-GA-AAATA-A
1 TAAAATATATATAAATATA
507153 -AAAATA-ATATAAATATA
1 TAAAATATATATAAATATA
507170 TAAAATA
1 TAAAATA
507177 AAATAAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 17
0.69 0.05 0.27
Matches are distributed among these distances:
15 15 0.34
16 10 0.23
17 3 0.07
18 7 0.16
19 9 0.20
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (19 bp):
TAAAATATATATAAATATA
Found at i:507140 original size:24 final size:25
Alignment explanation
Indices: 507111--507179 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
507101 ATTAAAATTT
* **
507111 ATATAAATATATAAAATATATTA-A
1 ATATAAATATATAAAATAAAAAATA
*
507135 ATATAAATAT-GAAAATAAAAAATA
1 ATATAAATATATAAAATAAAAAATA
507159 ATATAAATATATAAAATAAAA
1 ATATAAATATATAAAATAAAA
507180 TAAAAAACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
23 8 0.21
24 21 0.55
25 9 0.24
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (25 bp):
ATATAAATATATAAAATAAAAAATA
Found at i:507166 original size:30 final size:30
Alignment explanation
Indices: 507113--507186 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 30
507103 TAAAATTTAT
* *
507113 ATAAATATATAAAATATATTAAATATA-AAT
1 ATAAA-ATAAAAAATATATTAAATATATAAA
507143 ATGAAAATAAAAAATA-ATATAAATATATAAA
1 AT-AAAATAAAAAATATAT-TAAATATATAAA
507174 ATAAAATAAAAAA
1 ATAAAATAAAAAA
507187 CAAAGGCTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 2 0.05
30 30 0.77
31 7 0.18
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (30 bp):
ATAAAATAAAAAATATATTAAATATATAAA
Found at i:512534 original size:22 final size:21
Alignment explanation
Indices: 512508--512576 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 21
512498 TAATTCAAAC
512508 ATTTAAAATCGAAATAATTTAA
1 ATTTAAAATC-AAATAATTTAA
512530 ATTT---A--AAATAATTTAA
1 ATTTAAAATCAAATAATTTAA
512546 ATTTAAAATCAAAATAATTTAA
1 ATTTAAAATC-AAATAATTTAA
*
512568 AATTAAAAT
1 ATTTAAAAT
512577 AATCTAAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
16 15 0.38
19 2 0.05
22 23 0.57
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (21 bp):
ATTTAAAATCAAATAATTTAA
Found at i:512550 original size:38 final size:38
Alignment explanation
Indices: 512508--512591 Score: 141
Period size: 38 Copynumber: 2.2 Consensus size: 38
512498 TAATTCAAAC
* * *
512508 ATTTAAAATCGAAATAATTTAAATTTAAAATAATTTAA
1 ATTTAAAATCAAAATAATTTAAAATTAAAATAATCTAA
512546 ATTTAAAATCAAAATAATTTAAAATTAAAATAATCTAA
1 ATTTAAAATCAAAATAATTTAAAATTAAAATAATCTAA
512584 ATTTAAAA
1 ATTTAAAA
512592 ATTTAAAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (38 bp):
ATTTAAAATCAAAATAATTTAAAATTAAAATAATCTAA
Found at i:512589 original size:16 final size:16
Alignment explanation
Indices: 512519--512591 Score: 74
Period size: 16 Copynumber: 4.2 Consensus size: 16
512509 TTTAAAATCG
512519 AAATAATTTAAATTTA
1 AAATAATTTAAATTTA
512535 AAATAATTTAAATTTAAAATCA
1 AAATAATTTAAA-TT----T-A
*
512557 AAATAATTTAAAATTA
1 AAATAATTTAAATTTA
*
512573 AAATAATCTAAATTTA
1 AAATAATTTAAATTTA
512589 AAA
1 AAA
512592 ATTTAAAAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
16 30 0.62
17 3 0.06
21 2 0.04
22 13 0.27
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATAATTTAAATTTA
Found at i:512591 original size:22 final size:22
Alignment explanation
Indices: 512534--512576 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
512524 ATTTAAATTT
*
512534 AAAATAATTTAAATTTAAAATC
1 AAAATAATTTAAAATTAAAATC
512556 AAAATAATTTAAAATTAAAAT
1 AAAATAATTTAAAATTAAAAT
512577 AATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAATAATTTAAAATTAAAATC
Found at i:512606 original size:38 final size:38
Alignment explanation
Indices: 512508--512608 Score: 123
Period size: 38 Copynumber: 2.7 Consensus size: 38
512498 TAATTCAAAC
* * * *
512508 ATTTAAAATCGAAATAATTTAAATTTAAAATAATTTAA
1 ATTTAAAATCAAAATAACTTAAAATTAAAATAATCTAA
*
512546 ATTTAAAATCAAAATAATTTAAAATTAAAATAATCTAA
1 ATTTAAAATCAAAATAACTTAAAATTAAAATAATCTAA
**
512584 ATTTAAAAATTTAAA-AACTTAAAAT
1 ATTT-AAAATCAAAATAACTTAAAAT
512609 GATCAACTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 48 0.86
39 8 0.14
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (38 bp):
ATTTAAAATCAAAATAACTTAAAATTAAAATAATCTAA
Found at i:512620 original size:30 final size:29
Alignment explanation
Indices: 512561--512620 Score: 68
Period size: 30 Copynumber: 2.0 Consensus size: 29
512551 AAATCAAAAT
*
512561 AATTTAAAATTAAAATAATCTAAATTTAAA
1 AATTTAAAATTAAAATAATC-AAACTTAAA
*
512591 AATTTAAAAACTTAAAATGATC-AACTTAAA
1 AATTT-AAAA-TTAAAATAATCAAACTTAAA
512621 TTAATAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 12 0.46
31 4 0.15
32 10 0.38
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (29 bp):
AATTTAAAATTAAAATAATCAAACTTAAA
Found at i:513379 original size:17 final size:17
Alignment explanation
Indices: 513345--513380 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
513335 TCGTCAAAAC
513345 TAAAAATATGTACTTAG
1 TAAAAATATGTACTTAG
513362 TAAAACATATGTAC-TAG
1 TAAAA-ATATGTACTTAG
513379 TA
1 TA
513381 GTGTCAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.33
Consensus pattern (17 bp):
TAAAAATATGTACTTAG
Found at i:518289 original size:64 final size:65
Alignment explanation
Indices: 518174--518298 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 65
518164 TTAACCAACG
* *
518174 CGAAACTAGAATGGTCAACTAAAGGTGATCAAGATGAAACCTAAGTAAAAAAGAGTTGACCTAGA
1 CGAAACTAGAATAGTCAACTAAAGGTGAACAAGATGAAACCTAAGTAAAAAAGAGTTGACCTAGA
* * * * *
518239 CGAAACTAGAATAGTCAACTAAAGGT-AACTAGATGAAACTTATGTCAAAAAGGGTTGACC
1 CGAAACTAGAATAGTCAACTAAAGGTGAACAAGATGAAACCTAAGTAAAAAAGAGTTGACC
518299 AAGGTGAAAC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
64 28 0.53
65 25 0.47
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (65 bp):
CGAAACTAGAATAGTCAACTAAAGGTGAACAAGATGAAACCTAAGTAAAAAAGAGTTGACCTAGA
Found at i:518308 original size:31 final size:31
Alignment explanation
Indices: 518272--518339 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
518262 GGTAACTAGA
518272 TGAAACTTATGTCAAAAAGGGTTGACCAAGG
1 TGAAACTTATGTCAAAAAGGGTTGACCAAGG
* * *
518303 TGAAACTTATGTCGAAAAGGGTTGACTAGGG
1 TGAAACTTATGTCAAAAAGGGTTGACCAAGG
518334 TGAAAC
1 TGAAAC
518340 ATAATTGTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.24
Consensus pattern (31 bp):
TGAAACTTATGTCAAAAAGGGTTGACCAAGG
Found at i:518308 original size:64 final size:65
Alignment explanation
Indices: 518151--518309 Score: 194
Period size: 65 Copynumber: 2.5 Consensus size: 65
518141 TAAAACCATA
* * * * *
518151 ATGTCAAAAAAGGTTAACCAACGCGAAACTAGAATGGTCAACTAAAGGTGATCAAGATGAAACCT
1 ATGTCAAAAAGGGTTGACCAAGGCGAAACTAGAATAGTCAACTAAAGGTGAACAAGATGAAACCT
* * * * * * *
518216 AAGTAAAAAAGAGTTGACCTAGACGAAACTAGAATAGTCAACTAAAGGT-AACTAGATGAAACTT
1 ATGTCAAAAAGGGTTGACCAAGGCGAAACTAGAATAGTCAACTAAAGGTGAACAAGATGAAACCT
*
518280 ATGTCAAAAAGGGTTGACCAAGGTGAAACT
1 ATGTCAAAAAGGGTTGACCAAGGCGAAACT
518310 TATGTCGAAA
Statistics
Matches: 76, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
64 36 0.47
65 40 0.53
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (65 bp):
ATGTCAAAAAGGGTTGACCAAGGCGAAACTAGAATAGTCAACTAAAGGTGAACAAGATGAAACCT
Found at i:518554 original size:63 final size:63
Alignment explanation
Indices: 518430--518560 Score: 142
Period size: 63 Copynumber: 2.1 Consensus size: 63
518420 GATTAGGGCA
* * *
518430 AAACCTTTAGTCGAGAAAATTGATTAGGACAAAACAATGATAGTCAAAGATGTCACCAAGGTG
1 AAACCTTTAGTCGAGAAAATTAATTAGGACAAAACAATAATAGTCAAAGATGTAACCAAGGTG
* * * *
518493 AAACCTTTAGTCGA-AAAGATTAATTAAGG-TAAAACCATAATAGTTAAAGA-GATAACTAAGGT
1 AAACCTTTAGTCGAGAAA-ATTAATT-AGGACAAAACAATAATAGTCAAAGATG-TAACCAAGGT
518555 G
63 G
*
518556 GAACC
1 AAACC
518561 AAAATCGAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
62 4 0.07
63 50 0.88
64 3 0.05
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (63 bp):
AAACCTTTAGTCGAGAAAATTAATTAGGACAAAACAATAATAGTCAAAGATGTAACCAAGGTG
Found at i:519943 original size:60 final size:60
Alignment explanation
Indices: 519867--520099 Score: 279
Period size: 60 Copynumber: 3.9 Consensus size: 60
519857 AACTAAGGCA
* * * * *
519867 AAACCAAGATTCAACAAAATAGCTTGGACAAAATCAAAACCCTAAATAATGACTTGGGTG
1 AAACCAAGACTCAACAAAATAGCCTAGACAAAACCAAAAACCTAAATAATGACTTGGGTG
* * * *
519927 AAACCAAGACTTAACAAAATGGCCTGGATAAAACCAAAAACCTAAATAATGACTTGGGTG
1 AAACCAAGACTCAACAAAATAGCCTAGACAAAACCAAAAACCTAAATAATGACTTGGGTG
** * * * * * *
519987 AAACCAAGACTCAATTAAATGGCTTAGACAAAACCAAAACCCTGAACAATGACTTGGGTA
1 AAACCAAGACTCAACAAAATAGCCTAGACAAAACCAAAAACCTAAATAATGACTTGGGTG
** *
520047 AAACCAAGACTCAATGAAATAGCCTAGATAAAACCAAAAACCTAAA-AATGACT
1 AAACCAAGACTCAACAAAATAGCCTAGACAAAACCAAAAACCTAAATAATGACT
520100 ATATATGAAT
Statistics
Matches: 150, Mismatches: 23, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
59 7 0.05
60 143 0.95
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (60 bp):
AAACCAAGACTCAACAAAATAGCCTAGACAAAACCAAAAACCTAAATAATGACTTGGGTG
Found at i:519991 original size:30 final size:30
Alignment explanation
Indices: 519901--519993 Score: 98
Period size: 30 Copynumber: 3.1 Consensus size: 30
519891 TGGACAAAAT
*
519901 CAAAACCCTAAATAATGACTTGGGTGAAAC
1 CAAAAACCTAAATAATGACTTGGGTGAAAC
* * * * * * *
519931 C-AAGACTTAACAAAATGGCCTGGATAAAAC
1 CAAAAACCTAA-ATAATGACTTGGGTGAAAC
519961 CAAAAACCTAAATAATGACTTGGGTGAAAC
1 CAAAAACCTAAATAATGACTTGGGTGAAAC
519991 CAA
1 CAA
519994 GACTCAATTA
Statistics
Matches: 46, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
29 6 0.13
30 33 0.72
31 7 0.15
ACGTcount: A:0.46, C:0.19, G:0.16, T:0.18
Consensus pattern (30 bp):
CAAAAACCTAAATAATGACTTGGGTGAAAC
Found at i:520080 original size:120 final size:119
Alignment explanation
Indices: 519867--520099 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 119
519857 AACTAAGGCA
* * * * *
519867 AAACCAAGATTCAACAAAATAGCTTGGACAAAATCAAAACCCTAAATAATGACTTGGGTGAAACC
1 AAACCAAGACTCAACAAAATAGCTTAGACAAAACCAAAACCCTAAACAATGACTTGGGTAAAACC
* * *
519932 AAGACTTAACAAAATGGCCTGGATAAAACCAAAAACCTAAATAATGACTTGGGTG
66 AAGACTCAACAAAATAGCCTAGATAAAACCAAAAACCTAAA-AATGACTTGGGTG
** * *
519987 AAACCAAGACTCAATTAAATGGCTTAGACAAAACCAAAACCCTGAACAATGACTTGGGTAAAACC
1 AAACCAAGACTCAACAAAATAGCTTAGACAAAACCAAAACCCTAAACAATGACTTGGGTAAAACC
**
520052 AAGACTCAATGAAATAGCCTAGATAAAACCAAAAACCTAAAAATGACT
66 AAGACTCAACAAAATAGCCTAGATAAAACCAAAAACCTAAAAATGACT
520100 ATATATGAAT
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
119 7 0.07
120 92 0.93
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (119 bp):
AAACCAAGACTCAACAAAATAGCTTAGACAAAACCAAAACCCTAAACAATGACTTGGGTAAAACC
AAGACTCAACAAAATAGCCTAGATAAAACCAAAAACCTAAAAATGACTTGGGTG
Found at i:520454 original size:20 final size:21
Alignment explanation
Indices: 520413--520463 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
520403 TATAAATTGC
*
520413 ATCGATACAAATAGTAAATGT
1 ATCGATACATATAGTAAATGT
*
520434 ATCGATACATA-AGTGAATGT
1 ATCGATACATATAGTAAATGT
520454 ATCGATACAT
1 ATCGATACAT
520464 GCCTGAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
ATCGATACATATAGTAAATGT
Found at i:520475 original size:21 final size:21
Alignment explanation
Indices: 520428--520483 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
520418 TACAAATAGT
*
520428 AAATGTATCGATACATAAGTG
1 AAATGTATCGATACATAACTG
**
520449 -AATGTATCGATACATGCCTG
1 AAATGTATCGATACATAACTG
*
520469 AAATGTATCAATACA
1 AAATGTATCGATACA
520484 AAACCACTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (21 bp):
AAATGTATCGATACATAACTG
Found at i:528476 original size:2 final size:2
Alignment explanation
Indices: 528418--528460 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
528408 TAGGTTATTG
528418 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
528460 A
1 A
528461 CACACACACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:530012 original size:21 final size:20
Alignment explanation
Indices: 529986--530024 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
529976 AGGTCAAAAC
529986 CCTAGAAAGTATCGATACACA
1 CCTAG-AAGTATCGATACACA
*
530007 CCTAGATGTATCGATACA
1 CCTAGAAGTATCGATACA
530025 TATTGCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (20 bp):
CCTAGAAGTATCGATACACA
Found at i:532103 original size:16 final size:15
Alignment explanation
Indices: 532064--532105 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
532054 GCTAACTAAA
532064 TAAATTTTAATAATT
1 TAAATTTTAATAATT
*
532079 TATATTTTAA-AATAT
1 TAAATTTTAATAAT-T
532094 TAAAATTTTAAT
1 T-AAATTTTAAT
532106 CTTTCATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 3 0.14
15 11 0.50
16 8 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAAATTTTAATAATT
Found at i:532539 original size:5 final size:5
Alignment explanation
Indices: 532529--532554 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
532519 GGGTCAATGG
532529 TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT T
532555 CTTTCGCACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TAATT
Found at i:535987 original size:23 final size:24
Alignment explanation
Indices: 535949--535993 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
535939 GATATATATT
* *
535949 TAATAAATAG-TTTTTTTTTTAAA
1 TAATAAATAGAATTTTATTTTAAA
535972 TAATAAATAGAATTTTATTTTA
1 TAATAAATAGAATTTTATTTTA
535994 GGTTTAGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
TAATAAATAGAATTTTATTTTAAA
Found at i:536815 original size:17 final size:17
Alignment explanation
Indices: 536793--536827 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
536783 GATGAGATGA
536793 TGCAAAAATCAAAATGT
1 TGCAAAAATCAAAATGT
* *
536810 TGCAAAAGTCAAATTGT
1 TGCAAAAATCAAAATGT
536827 T
1 T
536828 TCTCTATGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (17 bp):
TGCAAAAATCAAAATGT
Found at i:537566 original size:18 final size:19
Alignment explanation
Indices: 537543--537584 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
537533 ATGATTAAAA
* *
537543 ATATTAAA-AATCATATTT
1 ATATTAAATAATAAAATTT
537561 ATATTAAATAATAAAATTT
1 ATATTAAATAATAAAATTT
537580 ATATT
1 ATATT
537585 TTTTCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATTAAATAATAAAATTT
Found at i:537575 original size:25 final size:24
Alignment explanation
Indices: 537541--537598 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
537531 AAATGATTAA
*
537541 AAATATTAAAAATCATATTTATATT-
1 AAATAATAAAAATCATATTT-T-TTC
* *
537566 AAATAATAAAATTTATATTTTTTC
1 AAATAATAAAAATCATATTTTTTC
537590 AAATAATAA
1 AAATAATAA
537599 TAATTAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.07
24 10 0.34
25 17 0.59
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (24 bp):
AAATAATAAAAATCATATTTTTTC
Found at i:537659 original size:27 final size:27
Alignment explanation
Indices: 537610--537661 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
537600 AATTAAAATT
*
537610 ATTTTATTATTTAAACTATTTATATTA
1 ATTTTATTATTTAAACTAATTATATTA
* * *
537637 ATTTTATTTTTTACATTAATTATAT
1 ATTTTATTATTTAAACTAATTATAT
537662 AATAATAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTATTATTTAAACTAATTATATTA
Found at i:537691 original size:33 final size:33
Alignment explanation
Indices: 537641--537722 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
537631 ATATTAATTT
* *
537641 TATTTTTTACATTAATTATATAATAATAAATACA
1 TATTTATTATATTAATTATATAATAATAAA-ACA
* * **
537675 TATTTATT-TATTAATTATATGATTATAAAATT
1 TATTTATTATATTAATTATATAATAATAAAACA
537707 TATTTATTATATTAAT
1 TATTTATTATATTAAT
537723 AAAAAATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.22
33 25 0.61
34 7 0.17
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (33 bp):
TATTTATTATATTAATTATATAATAATAAAACA
Found at i:537728 original size:24 final size:24
Alignment explanation
Indices: 537680--537729 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
537670 ATACATATTT
* *
537680 ATTTATTAATTATATGATTATAAA
1 ATTTATTAATTATATGAATAAAAA
* *
537704 ATTTATTTATTATATTAATAAAAA
1 ATTTATTAATTATATGAATAAAAA
537728 AT
1 AT
537730 AATTTTACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTATTAATTATATGAATAAAAA
Found at i:543075 original size:14 final size:14
Alignment explanation
Indices: 543056--543087 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
543046 TTGAACAAAA
*
543056 ATTAAAAATTCTTT
1 ATTAAAAATTATTT
543070 ATTAAAAATTATTT
1 ATTAAAAATTATTT
543084 ATTA
1 ATTA
543088 TAATAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTAAAAATTATTT
Found at i:552313 original size:16 final size:16
Alignment explanation
Indices: 552292--552323 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
552282 TTGACTTTTG
552292 ACAAAGGGGAAGAAAT
1 ACAAAGGGGAAGAAAT
*
552308 ACAAAGGGGGAGAAAT
1 ACAAAGGGGAAGAAAT
552324 TTTTAGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.34, T:0.06
Consensus pattern (16 bp):
ACAAAGGGGAAGAAAT
Found at i:552965 original size:13 final size:13
Alignment explanation
Indices: 552944--552975 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
552934 TTGATACATT
*
552944 ATACTTTGTATCG
1 ATACATTGTATCG
552957 ATACATTGTATCG
1 ATACATTGTATCG
552970 ATACAT
1 ATACAT
552976 ACTTAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (13 bp):
ATACATTGTATCG
Found at i:553068 original size:33 final size:33
Alignment explanation
Indices: 553025--553091 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
553015 CTAAGTGAAA
*
553025 TGTATCGATACATG-GGATAATGTATCGATACAT
1 TGTATCGATACATGAAGA-AATGTATCGATACAT
* *
553058 TGTATTGATACATGAAGAATTGTATCGATACAT
1 TGTATCGATACATGAAGAAATGTATCGATACAT
553091 T
1 T
553092 ATGCTCAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATGAAGAAATGTATCGATACAT
Found at i:553680 original size:20 final size:20
Alignment explanation
Indices: 553657--553730 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
553647 ACAATTCAAA
553657 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
553677 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
553698 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
553718 GTATCGATACATG
1 GTATCGATACATG
553731 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:553701 original size:21 final size:21
Alignment explanation
Indices: 553675--553750 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
553665 ACATGTTGCA
553675 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
553696 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
553716 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
553737 ATGTATCGATACAT
1 ATGTATCGATACAT
553751 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:553708 original size:41 final size:41
Alignment explanation
Indices: 553657--553750 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
553647 ACAATTCAAA
553657 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
553698 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
553739 GTATCGATACAT
1 GTATCGATACAT
553751 TTCTTGGCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:553807 original size:13 final size:13
Alignment explanation
Indices: 553789--553814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
553779 TACAGAAAGT
553789 ATGTATCGATACA
1 ATGTATCGATACA
553802 ATGTATCGATACA
1 ATGTATCGATACA
553815 TAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:557899 original size:15 final size:15
Alignment explanation
Indices: 557879--557909 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
557869 TAAAAATGTC
*
557879 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
557894 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
557909 C
1 C
557910 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:560006 original size:13 final size:13
Alignment explanation
Indices: 559988--560026 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
559978 ACATTTTTCC
559988 TTGTATCGATACA
1 TTGTATCGATACA
560001 TTGTATCGATACA
1 TTGTATCGATACA
*
560014 CTGTATCGATACA
1 TTGTATCGATACA
560027 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:562501 original size:20 final size:20
Alignment explanation
Indices: 562478--562551 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
562468 ACAATTCAAA
562478 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
562498 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
562519 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
562539 GTATCGATACATG
1 GTATCGATACATG
562552 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:562522 original size:21 final size:21
Alignment explanation
Indices: 562496--562571 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
562486 ACATGTTGCA
562496 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
562517 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
562537 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
562558 ATGTATCGATACAT
1 ATGTATCGATACAT
562572 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:562529 original size:41 final size:41
Alignment explanation
Indices: 562478--562571 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
562468 ACAATTCAAA
562478 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
562519 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
562560 GTATCGATACAT
1 GTATCGATACAT
562572 TTCTTGGCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:562628 original size:13 final size:13
Alignment explanation
Indices: 562610--562635 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
562600 TACAGAAAGT
562610 ATGTATCGATACA
1 ATGTATCGATACA
562623 ATGTATCGATACA
1 ATGTATCGATACA
562636 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:564470 original size:33 final size:32
Alignment explanation
Indices: 564433--564505 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 32
564423 AAGAATAAGA
*
564433 ATATAATATAAA-TATGTGA-ATGTATTAAAATTT
1 ATATAAAATAAATTAT-TGACATGTA-T-AAATTT
*
564466 ATATAAAAATAAATTATTGACGTGTATAAATTT
1 ATAT-AAAATAAATTATTGACATGTATAAATTT
564499 ATATAAA
1 ATATAAA
564506 TTTATAATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
32 3 0.09
33 14 0.40
34 11 0.31
35 7 0.20
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (32 bp):
ATATAAAATAAATTATTGACATGTATAAATTT
Found at i:564606 original size:25 final size:26
Alignment explanation
Indices: 564569--564617 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
564559 AAAAACATAA
*
564569 TATAAATTATTAAA-ATATAAAAATT
1 TATAAATTATTAAATATACAAAAATT
564594 TATAATATT-TTAAATATACAAAAA
1 TATAA-ATTATTAAATATACAAAAA
564618 ATAACACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
TATAAATTATTAAATATACAAAAATT
Found at i:565084 original size:12 final size:12
Alignment explanation
Indices: 565067--565097 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
565057 ATACACAAAC
565067 ATATAAAAATAT
1 ATATAAAAATAT
*
565079 ATATAAAAATTT
1 ATATAAAAATAT
565091 ATATAAA
1 ATATAAA
565098 TTTATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATATAAAAATAT
Found at i:565191 original size:10 final size:10
Alignment explanation
Indices: 565173--565211 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
565163 TTCTCTCTCC
565173 TTTCCTTTCA
1 TTTCCTTTCA
*
565183 TTTCATTTCA
1 TTTCCTTTCA
* *
565193 GTTCCTTTAA
1 TTTCCTTTCA
565203 TTTCCTTTC
1 TTTCCTTTC
565212 TTCTTTTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.13, C:0.26, G:0.03, T:0.59
Consensus pattern (10 bp):
TTTCCTTTCA
Found at i:565199 original size:20 final size:20
Alignment explanation
Indices: 565174--565211 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
565164 TCTCTCTCCT
*
565174 TTCCTTTCATTTCATTTCAG
1 TTCCTTTAATTTCATTTCAG
*
565194 TTCCTTTAATTTCCTTTC
1 TTCCTTTAATTTCATTTC
565212 TTCTTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.03, T:0.58
Consensus pattern (20 bp):
TTCCTTTAATTTCATTTCAG
Found at i:565754 original size:11 final size:11
Alignment explanation
Indices: 565738--565780 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
565728 AGACATGATG
565738 TAAAAATAATA
1 TAAAAATAATA
*
565749 TAAAAA-ATATT
1 TAAAAATA-ATA
565760 TAAAACATAATA
1 TAAAA-ATAATA
565772 TAAAAATAA
1 TAAAAATAA
565781 CATGAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
10 1 0.04
11 17 0.63
12 8 0.30
13 1 0.04
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:565754 original size:12 final size:12
Alignment explanation
Indices: 565739--565777 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
565729 GACATGATGT
565739 AAAAATAATATA
1 AAAAATAATATA
*
565751 AAAAAT-ATTTA
1 AAAAATAATATA
*
565762 AAACATAATATA
1 AAAAATAATATA
565774 AAAA
1 AAAA
565778 TAACATGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:566458 original size:17 final size:17
Alignment explanation
Indices: 566436--566485 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
566426 CGCTTTCTTT
566436 CTTTC-TTTCTCTCTCTC
1 CTTTCTTTTC-CTCTCTC
*
566453 CTTTCTTTTCCTTTCTC
1 CTTTCTTTTCCTCTCTC
* *
566470 CTTTTTTTTCATCTCT
1 CTTTCTTTTCCTCTCT
566486 TTCTCTCTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 24 0.86
18 4 0.14
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64
Consensus pattern (17 bp):
CTTTCTTTTCCTCTCTC
Found at i:566673 original size:26 final size:23
Alignment explanation
Indices: 566636--566691 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 23
566626 TTTAATATTT
566636 ATAAGTTTAATTAAATTAATAATAA
1 ATAA-TTTAATTAAATT-ATAATAA
*
566661 CATAATTTAAATTAAATTATATTAA
1 -ATAATTT-AATTAAATTATAATAA
566686 ATAATT
1 ATAATT
566692 ATTATTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 6 0.21
25 9 0.32
26 13 0.46
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
ATAATTTAATTAAATTATAATAA
Found at i:567401 original size:22 final size:25
Alignment explanation
Indices: 567361--567408 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 25
567351 ACTTGACTCT
567361 AATACAATATAGAAAAATAAT-TAA
1 AATACAATATAGAAAAATAATATAA
567385 AATACAATA-A-AAAAATAATATAA
1 AATACAATATAGAAAAATAATATAA
567408 A
1 A
567409 CACAATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.39
23 5 0.22
24 9 0.39
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (25 bp):
AATACAATATAGAAAAATAATATAA
Found at i:567413 original size:22 final size:22
Alignment explanation
Indices: 567364--567419 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
567354 TGACTCTAAT
*
567364 ACAATATAGAAAAATAATTAAAAT
1 ACAATA-A-AAAAATAATTAAAAC
567388 ACAATAAAAAAATAA-TATAAAC
1 ACAATAAAAAAATAATTA-AAAC
*
567410 ACAATCAAAA
1 ACAATAAAAA
567420 TATATAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 2 0.07
22 20 0.69
23 1 0.03
24 6 0.21
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.20
Consensus pattern (22 bp):
ACAATAAAAAAATAATTAAAAC
Done.