Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold328
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 936272
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
File 5 of 6
Found at i:735101 original size:33 final size:33
Alignment explanation
Indices: 735064--735130 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
735054 AGTAGCTTAA
735064 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
735097 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
735130 A
1 A
735131 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:735104 original size:13 final size:13
Alignment explanation
Indices: 735086--735110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
735076 CAAAAAAATA
735086 TGTATCGATACAT
1 TGTATCGATACAT
735099 TGTATCGATACA
1 TGTATCGATACA
735111 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:736197 original size:49 final size:49
Alignment explanation
Indices: 735880--736494 Score: 661
Period size: 49 Copynumber: 12.9 Consensus size: 49
735870 AAAAGTGATA
* * * * *
735880 AAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G
* * *
735931 AAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G
*
735985 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
736033 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
736078 TAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
736124 --G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
736170 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
736214 AAG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
736262 AA-AGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--
1 AAGA-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
736306 AAG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * * *
736354 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
736403 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
736452 AAGGTGCCAATATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
736495 GAAGGGTTGC
Statistics
Matches: 489, Mismatches: 44, Indels: 61
0.82 0.07 0.10
Matches are distributed among these distances:
43 140 0.29
44 11 0.02
45 4 0.01
46 6 0.01
47 5 0.01
48 42 0.09
49 197 0.40
50 1 0.00
51 2 0.00
52 36 0.07
53 4 0.01
54 3 0.01
55 38 0.08
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
Found at i:736229 original size:92 final size:92
Alignment explanation
Indices: 735942--736494 Score: 822
Period size: 92 Copynumber: 5.9 Consensus size: 92
735932 AAAAGGATGT
* * *
735942 CAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATATGCTGATT
* *
736007 CAAGGCCAGCTATATTGGACTTAAAGGTGC
63 CAAGGCCAGCGATATTGGACTTAAAAGTGC
*
736037 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-TAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
*
736101 GGCCAGCGATATTGGACTTAAAGGTGC
66 GGCCAGCGATATTGGACTTAAAAGTGC
*
736128 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
736193 GGCCAGCGATATTGGACTTAAAAGTGC
66 GGCCAGCGATATTGGACTTAAAAGTGC
736220 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA-AGTGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGA-TGCCAATATGCTGATTCA
736284 AGGCCAGCGATATTGGACTTAAAAGTGC
65 AGGCCAGCGATATTGGACTTAAAAGTGC
* * *
736312 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
* *
736377 GGCCAGCTACATTGGACTTAAAGGTAAAGGTGC
66 GGCCAGCGATATTGGACTT--A---AAA-GTGC
* * * * *
736410 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
* *
736475 GGCCAGCTATATTGGGCTTA
66 GGCCAGCGATATTGGACTTA
736495 GAAGGGTTGC
Statistics
Matches: 427, Mismatches: 22, Indels: 17
0.92 0.05 0.04
Matches are distributed among these distances:
91 88 0.21
92 215 0.50
94 1 0.00
95 39 0.09
96 1 0.00
97 3 0.01
98 80 0.19
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAAGTGC
Found at i:736573 original size:34 final size:34
Alignment explanation
Indices: 736515--736830 Score: 302
Period size: 34 Copynumber: 9.4 Consensus size: 34
736505 CACCGACTTG
* *
736515 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGT
1 TGTGGGCTTTA--AAAGGAAAAAGATGCCACGGAGT
*
736551 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-GGAAAAAGA-TGCCACGGAGT
*
736586 TGTGGGCTTTAAAAGAAAAAAG-TGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
736619 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAGA-TGCCACGGAGT
*
736656 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGATGCCACGGAGT
* *
736690 TGTGGACTTT--AA--AAAGAG-TGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
* *
736719 TGTGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGATGCCACGGAGT
* *
736753 TGTGGGCTTT-----GAAAAAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
* * *
736782 TGTGGGCTTTGAAAA-GAAGAAGGTGCTACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGATGCCACGGAGT
736816 TGTGGGCTTTGAAAA
1 TGTGGGCTTT-AAAA
736831 AAATGCCACT
Statistics
Matches: 241, Mismatches: 21, Indels: 38
0.80 0.07 0.13
Matches are distributed among these distances:
29 45 0.19
30 5 0.02
31 1 0.00
32 3 0.01
33 27 0.11
34 82 0.34
35 41 0.17
36 15 0.06
37 22 0.09
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.22
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
Found at i:736713 original size:29 final size:30
Alignment explanation
Indices: 736637--736854 Score: 219
Period size: 34 Copynumber: 7.0 Consensus size: 30
736627 TTGAAAAGGG
736637 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-A
* *
736668 ACAGAAAAAGGTGCCACGGAGTTGTGGACTTT-
1 A-A-AAAGA-GTGCCACGGAGTTGTGGGCTTTA
736700 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-A
*
736731 AAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTG
1 AAA-AAG-A-GTGCCACGGAGTTGTGGGCTTTA
* *
736764 AAAAAGA-TGCCACTGACTTGTGGGCTTTGA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-A
*
736794 AAAGAAGAAGGTGCTACGGAGTTGTGGGCTTTGA
1 AAA-AAG-A-GTGCCACGGAGTTGTGGGCTTT-A
* *
736828 AAAAA-A-TGCCACTGACTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
736855 TGAAGGGTAA
Statistics
Matches: 160, Mismatches: 14, Indels: 28
0.79 0.07 0.14
Matches are distributed among these distances:
29 58 0.36
30 7 0.04
31 10 0.06
32 9 0.06
33 10 0.06
34 66 0.41
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.24
Consensus pattern (30 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTA
Found at i:736742 original size:63 final size:64
Alignment explanation
Indices: 736636--736854 Score: 329
Period size: 63 Copynumber: 3.5 Consensus size: 64
736626 TTTGAAAAGG
* * *
736636 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACAGAAAAAGGTGCCACGGAGTTGTGGACTTT
1 GAAAAAGAGTGCCACGGACTTGTGGGCTTTGAAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTTT
*
736700 -AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGACTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
* *
736763 GAAAAAGA-TGCCACTGACTTGTGGGCTTTGAAAAGAAGAAGGTGCTACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGACTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
* *
736826 GAAAAA-AATGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGACTTGTGGGCTTT
736855 TGAAGGGTAA
Statistics
Matches: 147, Mismatches: 5, Indels: 7
0.92 0.03 0.04
Matches are distributed among these distances:
62 1 0.01
63 136 0.93
64 10 0.07
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.24
Consensus pattern (64 bp):
GAAAAAGAGTGCCACGGACTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
Found at i:738302 original size:1 final size:1
Alignment explanation
Indices: 738298--738393 Score: 66
Period size: 1 Copynumber: 96.0 Consensus size: 1
738288 CCGGACCCCC
* * * * * * ** * *
738298 TTTTTTGTTTTTGTTTGTTTTTTTATTGTTTTTGTTTTTTTTTTTCCTTTTGTTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** **
738363 TTTTTTTCATTTTTTCGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
738394 GGAGGACGCC
Statistics
Matches: 71, Mismatches: 24, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.85
Consensus pattern (1 bp):
T
Found at i:738319 original size:18 final size:17
Alignment explanation
Indices: 738298--738369 Score: 85
Period size: 18 Copynumber: 4.2 Consensus size: 17
738288 CCGGACCCCC
738298 TTTTTTGTTTTTGTTTGT
1 TTTTTTGTTTTT-TTTGT
* *
738316 TTTTTTATTGTTTTTGT
1 TTTTTTGTTTTTTTTGT
738333 TTTTTT-TTTTCCTTTTGT
1 TTTTTTGTTTT--TTTTGT
738351 TTTTTTGTTTTTTTT-T
1 TTTTTTGTTTTTTTTGT
738367 TTT
1 TTT
738370 CATTTTTTCG
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
16 7 0.15
17 15 0.31
18 22 0.46
19 4 0.08
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (17 bp):
TTTTTTGTTTTTTTTGT
Found at i:738328 original size:21 final size:20
Alignment explanation
Indices: 738298--738394 Score: 83
Period size: 21 Copynumber: 4.7 Consensus size: 20
738288 CCGGACCCCC
738298 TTTTTTGTTTTTGTTTGTTT
1 TTTTTTGTTTTTGTTTGTTT
738318 TTTTATTGTTTTTGTTT-TTT
1 TTTT-TTGTTTTTGTTTGTTT
* *
738338 TTTTTCCTTTTGTTTTTTTGTTT
1 TTTTT--TGTT-TTTGTTTGTTT
*
738361 TTTTTT-TTTCATTTTTTCGTTT
1 TTTTTTGTTT--TTGTTT-GTTT
738383 TTTTTT-TTTTTG
1 TTTTTTGTTTTTG
738395 GAGGACGCCG
Statistics
Matches: 66, Mismatches: 3, Indels: 16
0.78 0.04 0.19
Matches are distributed among these distances:
19 2 0.03
20 15 0.23
21 22 0.33
22 19 0.29
23 8 0.12
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.85
Consensus pattern (20 bp):
TTTTTTGTTTTTGTTTGTTT
Found at i:738330 original size:27 final size:25
Alignment explanation
Indices: 738299--738393 Score: 106
Period size: 24 Copynumber: 3.8 Consensus size: 25
738289 CGGACCCCCT
738299 TTTTTGTTTTTGTTTGTTTTTTTATTG
1 TTTTTGTTTTT-TTT-TTTTTTTATTG
**
738326 TTTTTGTTTTTTTTTTTCCTT-TTG
1 TTTTTGTTTTTTTTTTTTTTTATTG
*
738350 TTTTT-TTGTTTTTTTTTTTTCATT-
1 TTTTTGTT-TTTTTTTTTTTTTATTG
*
738374 TTTTCGTTTTTTTTTTTTTT
1 TTTTTGTTTTTTTTTTTTTT
738394 GGAGGACGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
23 2 0.03
24 34 0.58
25 9 0.15
26 3 0.05
27 11 0.19
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.85
Consensus pattern (25 bp):
TTTTTGTTTTTTTTTTTTTTTATTG
Found at i:738350 original size:35 final size:34
Alignment explanation
Indices: 738311--738391 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 34
738301 TTTGTTTTTG
738311 TTTGTTTTTTTATTGTTTTTGTTTTT-TTTTTTCCT
1 TTTGTTTTTTTATT-TTTTT-TTTTTATTTTTTCCT
* *
738346 TTTGTTTTTTTGTTTTTTTTTTTTCATTTTTTCGT
1 TTTGTTTTTTTATTTTTTTTTTTT-ATTTTTTCCT
*
738381 TTTTTTTTTTT
1 TTTGTTTTTTT
738392 TTGGAGGACG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
33 5 0.12
34 5 0.12
35 31 0.76
ACGTcount: A:0.02, C:0.05, G:0.07, T:0.85
Consensus pattern (34 bp):
TTTGTTTTTTTATTTTTTTTTTTTATTTTTTCCT
Found at i:738360 original size:47 final size:48
Alignment explanation
Indices: 738296--738390 Score: 133
Period size: 48 Copynumber: 2.0 Consensus size: 48
738286 ATCCGGACCC
*
738296 CCTTTTTTGTTTTTG-TTTGTTTTTTT-ATTGTTTTTGTTTTTTTTTTT
1 CCTTTTTTGTTTTTGTTTTGTTTTTTTCATT-TTTTCGTTTTTTTTTTT
*
738343 CCTTTTGTT-TTTTTGTTTTTTTTTTTTCATTTTTTCGTTTTTTTTTTT
1 CCTTTT-TTGTTTTTGTTTTGTTTTTTTCATTTTTTCGTTTTTTTTTTT
738391 TTTGGAGGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 12 0.28
48 28 0.65
49 3 0.07
ACGTcount: A:0.02, C:0.06, G:0.08, T:0.83
Consensus pattern (48 bp):
CCTTTTTTGTTTTTGTTTTGTTTTTTTCATTTTTTCGTTTTTTTTTTT
Found at i:748108 original size:10 final size:10
Alignment explanation
Indices: 748093--748119 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
748083 ATGTATCAAG
748093 CAAAAACAAA
1 CAAAAACAAA
748103 CAAAAACAAA
1 CAAAAACAAA
748113 CAAAAAC
1 CAAAAAC
748120 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:752351 original size:52 final size:52
Alignment explanation
Indices: 752273--752400 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
752263 CAAAATATGA
* *
752273 AAATTTGCCTACATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
752325 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
752377 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
752401 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
51 21 0.29
52 47 0.64
53 5 0.07
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:752413 original size:51 final size:50
Alignment explanation
Indices: 752273--752420 Score: 185
Period size: 52 Copynumber: 2.9 Consensus size: 50
752263 CAAAATATGA
* *
752273 AAATTTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGGGC
752325 AAATTTGCCTGCATGTATCGATACATTTTAAA-A-TGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA----AAATAGTGTATCGATACATCTGGGC
752377 AAA-TTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
752421 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 2, Indels: 13
0.85 0.02 0.13
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
50 1 0.01
51 33 0.38
52 46 0.52
53 1 0.01
54 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (50 bp):
AAATTTGCCTGCATGTATCGATACAAAATAGTGTATCGATACATCTGGGC
Found at i:752427 original size:13 final size:13
Alignment explanation
Indices: 752409--752433 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
752399 CAAAGATCAG
752409 TGTATCGATACAA
1 TGTATCGATACAA
752422 TGTATCGATACA
1 TGTATCGATACA
752434 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:752511 original size:33 final size:33
Alignment explanation
Indices: 752474--752540 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
752464 AGTAGCTTAA
752474 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
752507 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
752540 A
1 A
752541 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:752514 original size:13 final size:13
Alignment explanation
Indices: 752496--752520 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
752486 CAAAAAAATA
752496 TGTATCGATACAT
1 TGTATCGATACAT
752509 TGTATCGATACA
1 TGTATCGATACA
752521 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:753606 original size:49 final size:49
Alignment explanation
Indices: 753289--753903 Score: 661
Period size: 49 Copynumber: 12.9 Consensus size: 49
753279 AAAAGTGATA
* * * * *
753289 AAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G
* * *
753340 AAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G
*
753394 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
753442 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
753487 TAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
753533 --G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
753579 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
753623 AAG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
753671 AA-AGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--
1 AAGA-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
753715 AAG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * * *
753763 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
753812 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
753861 AAGGTGCCAATATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
753904 GAAGGGTTGC
Statistics
Matches: 489, Mismatches: 44, Indels: 61
0.82 0.07 0.10
Matches are distributed among these distances:
43 140 0.29
44 11 0.02
45 4 0.01
46 6 0.01
47 5 0.01
48 42 0.09
49 197 0.40
50 1 0.00
51 2 0.00
52 36 0.07
53 4 0.01
54 3 0.01
55 38 0.08
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
Found at i:753638 original size:92 final size:92
Alignment explanation
Indices: 753351--753903 Score: 822
Period size: 92 Copynumber: 5.9 Consensus size: 92
753341 AAAAGGATGT
* * *
753351 CAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATATGCTGATT
* *
753416 CAAGGCCAGCTATATTGGACTTAAAGGTGC
63 CAAGGCCAGCGATATTGGACTTAAAAGTGC
*
753446 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-TAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
*
753510 GGCCAGCGATATTGGACTTAAAGGTGC
66 GGCCAGCGATATTGGACTTAAAAGTGC
*
753537 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
753602 GGCCAGCGATATTGGACTTAAAAGTGC
66 GGCCAGCGATATTGGACTTAAAAGTGC
753629 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA-AGTGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGA-TGCCAATATGCTGATTCA
753693 AGGCCAGCGATATTGGACTTAAAAGTGC
65 AGGCCAGCGATATTGGACTTAAAAGTGC
* * *
753721 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
* *
753786 GGCCAGCTACATTGGACTTAAAGGTAAAGGTGC
66 GGCCAGCGATATTGGACTT--A---AAA-GTGC
* * * * *
753819 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
* *
753884 GGCCAGCTATATTGGGCTTA
66 GGCCAGCGATATTGGACTTA
753904 GAAGGGTTGC
Statistics
Matches: 427, Mismatches: 22, Indels: 17
0.92 0.05 0.04
Matches are distributed among these distances:
91 88 0.21
92 215 0.50
94 1 0.00
95 39 0.09
96 1 0.00
97 3 0.01
98 80 0.19
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAAGTGC
Found at i:753982 original size:34 final size:34
Alignment explanation
Indices: 753924--754205 Score: 277
Period size: 34 Copynumber: 8.4 Consensus size: 34
753914 CACCGACTTG
* *
753924 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGT
1 TGTGGGCTTTA--AAAGGAAAAAGATGCCACGGAGT
*
753960 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-GGAAAAAGA-TGCCACGGAGT
*
753995 TGTGGGCTTTAAAAGAAAAAAG-TGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
754028 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAGA-TGCCACGGAGT
*
754065 TGTGGGCTTT--AA--AAAGAG-TGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
* *
754094 TGTGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGATGCCACGGAGT
* *
754128 TGTGGGCTTT-----GAAAAAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
* *
754157 TGTGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGATGCCACGGAGT
754191 TGTGGGCTTTGAAAA
1 TGTGGGCTTT-AAAA
754206 AAATGCCACT
Statistics
Matches: 212, Mismatches: 17, Indels: 36
0.80 0.06 0.14
Matches are distributed among these distances:
29 46 0.22
31 5 0.02
32 2 0.01
33 27 0.13
34 65 0.31
35 34 0.16
36 12 0.06
37 21 0.10
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.22
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGT
Found at i:754078 original size:29 final size:30
Alignment explanation
Indices: 754045--754229 Score: 232
Period size: 29 Copynumber: 6.0 Consensus size: 30
754035 TTTGAAAAGG
754045 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
754075 -AAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
754104 GAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 G-AAA-AAG-A-GTGCCACGGAGTTGTGGGCTTT
* *
754138 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
754167 GAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 G-AAA-AAG-A-GTGCCACGGAGTTGTGGGCTTT
* * *
754201 GAAAAA-AATGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
754230 TGAAGGGTAA
Statistics
Matches: 138, Mismatches: 7, Indels: 21
0.83 0.04 0.13
Matches are distributed among these distances:
29 68 0.49
30 4 0.03
31 7 0.05
32 9 0.07
33 7 0.05
34 43 0.31
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.24
Consensus pattern (30 bp):
GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
Found at i:754160 original size:63 final size:65
Alignment explanation
Indices: 753944--754229 Score: 372
Period size: 63 Copynumber: 4.4 Consensus size: 65
753934 AGGAAGGGAG
*
753944 AAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT--
754007 AAGAA
63 --GAA
754012 AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-
1 AAAGA-TGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTG
754075 AA
64 AA
*
754077 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA-GAAGAAG-GTGCCACGGAGTTGTGGGCTTTGA
1 AAAGA-TGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGA
754140 A
65 A
* * *
754141 AAAGATGCCACTGACTTGTGGGCTTTGAAAA-GAAGAAG-GTGCCACGGAGTTGTGGGCTTTGAA
1 AAAGATGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
* * *
754204 AAAAATGCCACTGACTTGTGGGCTTT
1 AAAGATGCCACGGAGTTGTGGGCTTT
754230 TGAAGGGTAA
Statistics
Matches: 208, Mismatches: 5, Indels: 15
0.91 0.02 0.07
Matches are distributed among these distances:
63 103 0.50
64 13 0.06
65 5 0.02
66 28 0.13
67 1 0.00
68 20 0.10
69 2 0.01
70 36 0.17
ACGTcount: A:0.31, C:0.13, G:0.34, T:0.22
Consensus pattern (65 bp):
AAAGATGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
Found at i:755677 original size:1 final size:1
Alignment explanation
Indices: 755673--755770 Score: 61
Period size: 1 Copynumber: 98.0 Consensus size: 1
755663 CCGGACCCCC
* * * * * * ** * *
755673 TTTTTTGTTTTTGTTTGTTTTTTTATTGTTTTTGTTTTTTTTTTCCTTTTGTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** **
755738 TTTTTGTTTTTTCATTTTTTCGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
755771 GGAGGACGCC
Statistics
Matches: 71, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:755685 original size:6 final size:6
Alignment explanation
Indices: 755674--755748 Score: 68
Period size: 6 Copynumber: 12.8 Consensus size: 6
755664 CGGACCCCCT
* *
755674 TTTTTG TTTTTG --TTTG TTTTT- TTATTG TTTTTG TTTTT- TTTTTCC
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT-G
* *
755719 TTTTGTT TTTTTG TTTTTT TTTTTG TTTTT
1 TTTT-TG TTTTTG TTTTTG TTTTTG TTTTT
755749 TCATTTTTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
4 4 0.07
5 9 0.16
6 35 0.61
7 8 0.14
8 1 0.02
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:755704 original size:27 final size:25
Alignment explanation
Indices: 755673--755767 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 25
755663 CCGGACCCCC
755673 TTTTTTGTTTTTGTTTGTTTTTTTAT
1 TTTTTTGTTTTT-TTTGTTTTTTTAT
*
755699 TGTTTTTGTTTTTTTT-TTCCTTTTGTTT
1 T-TTTTTGTTTTTTTTGTT--TTTT-TAT
* *
755727 TTTTGTTTTTTTTTTTGTTTTTTCAT
1 TTTT-TTGTTTTTTTTGTTTTTTTAT
*
755753 TTTTTCGTTTTTTTT
1 TTTTTTGTTTTTTTT
755768 TTTGGAGGAC
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
25 11 0.19
26 9 0.16
27 22 0.39
28 13 0.23
29 2 0.04
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.84
Consensus pattern (25 bp):
TTTTTTGTTTTTTTTGTTTTTTTAT
Found at i:755705 original size:12 final size:12
Alignment explanation
Indices: 755673--755771 Score: 92
Period size: 13 Copynumber: 7.6 Consensus size: 12
755663 CCGGACCCCC
755673 TTTTTTGTTTTT
1 TTTTTTGTTTTT
755685 GTTTGTTT-TTTTAT
1 -TTT-TTTGTTTT-T
755699 TGTTTTTGTTTTT
1 T-TTTTTGTTTTT
**
755712 TTTTTCCTTTTGT
1 TTTTTTGTTTT-T
755725 TTTTTTGTTTTT
1 TTTTTTGTTTTT
755737 TTTTTTGTTTTTT
1 TTTTTTG-TTTTT
755750 CATTTTTTCGTTTTT
1 --TTTTTT-GTTTTT
755765 TTTTTTG
1 TTTTTTG
755772 GAGGACGCCG
Statistics
Matches: 73, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
12 17 0.23
13 34 0.47
14 10 0.14
15 11 0.15
16 1 0.01
ACGTcount: A:0.02, C:0.04, G:0.10, T:0.84
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:755724 original size:34 final size:33
Alignment explanation
Indices: 755686--755755 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
755676 TTTGTTTTTG
*
755686 TTTGTTTTTTTATTGTTTTTGTTTT-TTTTTTCCT
1 TTTGTTTTTTTATT-TTTTT-TTTTGTTTTTTCAT
*
755720 TTTGTTTTTTTGTTTTTTTTTTTGTTTTTTCAT
1 TTTGTTTTTTTATTTTTTTTTTTGTTTTTTCAT
755753 TTT
1 TTT
755756 TTCGTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 4 0.12
33 16 0.48
34 13 0.39
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (33 bp):
TTTGTTTTTTTATTTTTTTTTTTGTTTTTTCAT
Found at i:755757 original size:21 final size:19
Alignment explanation
Indices: 755673--755749 Score: 82
Period size: 22 Copynumber: 3.7 Consensus size: 19
755663 CCGGACCCCC
755673 TTTTTTGTTTTTGTTTGTTTT
1 TTTTTTGTTTTT-TTT-TTTT
*
755694 TTTATTGTTTTTGTTTTTTTT
1 TTTTTTG-TTTT-TTTTTTTT
755715 TTCCTTTTGTTTTTTTGTTTTT
1 TT--TTTTGTTTTTTT-TTTTT
755737 TTTTTTGTTTTTT
1 TTTTTTGTTTTTT
755750 CATTTTTTCG
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
20 11 0.22
21 15 0.31
22 18 0.37
23 5 0.10
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTTTTT
Found at i:756958 original size:29 final size:29
Alignment explanation
Indices: 756925--756986 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
756915 AAAAAGCCTA
* *
756925 AATTCAAAACTTTGGGGTGCTACTTTATG
1 AATTCAAAACTTTGGGATGCAACTTTATG
* *
756954 AATTCCAAACTTTGTGATGCAACTTTATG
1 AATTCAAAACTTTGGGATGCAACTTTATG
756983 AATT
1 AATT
756987 GTAAAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.39
Consensus pattern (29 bp):
AATTCAAAACTTTGGGATGCAACTTTATG
Found at i:760778 original size:20 final size:20
Alignment explanation
Indices: 760753--760807 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
760743 AATTCCTTGT
*
760753 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
*
760773 ATGTATCGATACAATGAAAA
1 ATGTATCGATACATTGAAAA
760793 ATGTATCGATACATT
1 ATGTATCGATACATT
760808 TTAGTCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:767131 original size:52 final size:52
Alignment explanation
Indices: 767053--767181 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
767043 CAAAATATGA
* * *
767053 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAAGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATATAAGC
* **
767105 AAATTTGCCTGTATGTATCGATACATTTAATAGTGTATCGATACATATGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATATAAGC
767157 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
767182 AAGATCAATG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATATAAGC
Found at i:767194 original size:52 final size:50
Alignment explanation
Indices: 767053--767202 Score: 158
Period size: 52 Copynumber: 2.9 Consensus size: 50
767043 CAAAATATGA
* ** *
767053 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAAGC
1 AAATTTGCCTGCATGTATCGATACAAATCA-A-TGTATCGATACATATAAGC
* * **
767105 AAATTTGCCTGTATGTATCGATACATTTAAT-AGTGTATCGATACATATGGGC
1 AAATTTGCCTGCATGTATCGATACA---AATCAATGTATCGATACATATAAGC
767157 AAATTTGCCTGCATGTATCGATACAAAGATCAATGTATCGATACAT
1 AAATTTGCCTGCATGTATCGATAC-AA-ATCAATGTATCGATACAT
767203 TTGAGTAATA
Statistics
Matches: 82, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
50 1 0.01
51 2 0.02
52 76 0.93
53 1 0.01
54 1 0.01
55 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (50 bp):
AAATTTGCCTGCATGTATCGATACAAATCAATGTATCGATACATATAAGC
Found at i:767264 original size:13 final size:13
Alignment explanation
Indices: 767246--767328 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 13
767236 AACTTCGTAG
767246 CGATACATTGTAT
1 CGATACATTGTAT
767259 CGATACAAACTTATGTAT
1 CGATAC--A--T-TGTAT
*
767277 CGATACATTATAT
1 CGATACATTGTAT
767290 CGATACAATACTTATGTAT
1 CGATAC---A--T-TGTAT
767309 CGATACATTGTAT
1 CGATACATTGTAT
767322 CGATACA
1 CGATACA
767329 ACACTTATGT
Statistics
Matches: 57, Mismatches: 2, Indels: 22
0.70 0.02 0.27
Matches are distributed among these distances:
13 28 0.49
14 2 0.04
15 1 0.02
16 3 0.05
17 1 0.02
18 12 0.21
19 10 0.18
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:767308 original size:32 final size:31
Alignment explanation
Indices: 767246--767347 Score: 177
Period size: 32 Copynumber: 3.2 Consensus size: 31
767236 AACTTCGTAG
767246 CGATACATTGTATCGATACAAACTTATGTAT
1 CGATACATTGTATCGATACAAACTTATGTAT
*
767277 CGATACATTATATCGATACAATACTTATGTAT
1 CGATACATTGTATCGATACAA-ACTTATGTAT
767309 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAA-ACTTATGTAT
767341 CGATACA
1 CGATACA
767348 AATCGTTGAA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
31 20 0.30
32 47 0.70
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (31 bp):
CGATACATTGTATCGATACAAACTTATGTAT
Found at i:767311 original size:19 final size:18
Alignment explanation
Indices: 767254--767349 Score: 104
Period size: 19 Copynumber: 5.8 Consensus size: 18
767244 AGCGATACAT
767254 TGTATCGATACAAACTTA
1 TGTATCGATACAAACTTA
767272 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
767287 --TATCGATACAATACTTA
1 TGTATCGATACAA-ACTTA
767304 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
767317 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
767336 TGTATCGATACAAA
1 TGTATCGATACAAA
767350 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 20 0.30
14 1 0.02
15 3 0.05
16 4 0.06
17 3 0.05
18 13 0.20
19 22 0.33
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:771891 original size:28 final size:28
Alignment explanation
Indices: 771851--771904 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
771841 CTTTAATAAT
771851 TATATTCAATCTAAAAACATAAACAATG
1 TATATTCAATCTAAAAACATAAACAATG
*
771879 TATATTCAATCTAAAAAGATAAACAA
1 TATATTCAATCTAAAAACATAAACAA
771905 CAAGAATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.56, C:0.13, G:0.04, T:0.28
Consensus pattern (28 bp):
TATATTCAATCTAAAAACATAAACAATG
Found at i:775865 original size:18 final size:18
Alignment explanation
Indices: 775842--775879 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
775832 ATTGTGTTTG
775842 TATGTGGATGATATTATT
1 TATGTGGATGATATTATT
775860 TATGTGGATGATATTATT
1 TATGTGGATGATATTATT
775878 TA
1 TA
775880 CACTAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (18 bp):
TATGTGGATGATATTATT
Found at i:777076 original size:16 final size:17
Alignment explanation
Indices: 777055--777118 Score: 62
Period size: 16 Copynumber: 3.9 Consensus size: 17
777045 CCCGAGCCCT
777055 AAAATGATCC-GAACCC
1 AAAATGATCCTGAACCC
* *
777071 AAAATGACCCTGAATCC
1 AAAATGATCCTGAACCC
*
777088 GAAATGA-CGC-GAACCC
1 AAAATGATC-CTGAACCC
*
777104 GAAATGATCCTGAAC
1 AAAATGATCCTGAAC
777119 TTTAATTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 23 0.57
17 17 0.43
ACGTcount: A:0.41, C:0.28, G:0.17, T:0.14
Consensus pattern (17 bp):
AAAATGATCCTGAACCC
Found at i:778552 original size:15 final size:16
Alignment explanation
Indices: 778528--778560 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
778518 TCCAAACCTT
*
778528 TTCTTTAACTTT-CTC
1 TTCTTCAACTTTACTC
778543 TTCTTCAACTTTACTC
1 TTCTTCAACTTTACTC
778559 TT
1 TT
778561 TTGGTTGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (16 bp):
TTCTTCAACTTTACTC
Found at i:788776 original size:323 final size:323
Alignment explanation
Indices: 788175--788792 Score: 1024
Period size: 323 Copynumber: 1.9 Consensus size: 323
788165 ATTTATTCAA
* * * *
788175 ACTTGAAAGCTCATTGAGTATTTGAGGTAGTTTAAACAAAAATATTACGCTCGAAAAATGAGTTT
1 ACTTGAAAGCTCATTGAGTATTTGAGGTACTTTAAACAAAAATATTACGCCCAAAAAATAAGTTT
*
788240 ATACAAAAAATAAAACTCATTTAAAAAATGGGTTGAGCCTTAGCTTCAACATTTAAGGCTTGACT
66 ATACAAAAAATAAAACTCATTTAAAAAATGAGTTGAGCCTTAGCTTCAACATTTAAGGCTTGACT
* * *
788305 TAACTTATTTTGTAATTGTATAATATATTATTTTTATTTTTATATATTATGCAATTCATATCACG
131 CAACTCATTTTGTAATTGTATAATATATTATTTTTATTTATATATATTATGCAATTCATATCACG
*
788370 TAAATATTAGATATATAATATTATAATGTAAAACATTAAAAAATATGCCATAAAGTCTATGTTTA
196 TAAATATTAGATATATAATATTATAATATAAAACATTAAAAAATATGCCATAAAGTCTATGTTTA
788435 AAAACTAATATAAAAAATATAAAATCACTAAATATATTTTTAACAAATATAAACTTAATCGAT
261 AAAACTAATATAAAAAATATAAAATCACTAAATATATTTTTAACAAATATAAACTTAATCGAT
* * *
788498 ACTTGAAAGCTTATTGAGTATTTGAGGTACTTTAAATAAAAATATTATGCCCAAAAAATAAGTTT
1 ACTTGAAAGCTCATTGAGTATTTGAGGTACTTTAAACAAAAATATTACGCCCAAAAAATAAGTTT
* * * *
788563 GTACAAAAAATAAGACTCATTTAAAAAATGAGTTGGGCCTT-GATTTCAACATTTAAGGCTTGAC
66 ATACAAAAAATAAAACTCATTTAAAAAATGAGTTGAGCCTTAG-CTTCAACATTTAAGGCTTGAC
* * *
788627 TCAACTCATTTTGTAATTGTATAATATATTATTTTTATTTATATATATTATGTAATTTATATCAT
130 TCAACTCATTTTGTAATTGTATAATATATTATTTTTATTTATATATATTATGCAATTCATATCAC
*
788692 GTAAATATTAGATATATAATATTATAATATAAAACATTGAAAAAATATGTCATAAAGTCTATGTT
195 GTAAATATTAGATATATAATATTATAATATAAAACATT-AAAAAATATGCCATAAAGTCTATGTT
788757 TAAAAACTAATAT-AAAAATATAAAATCACTAAATAT
259 TAAAAACTAATATAAAAAATATAAAATCACTAAATAT
788793 TAAATAACAA
Statistics
Matches: 273, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
322 1 0.00
323 234 0.86
324 38 0.14
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.37
Consensus pattern (323 bp):
ACTTGAAAGCTCATTGAGTATTTGAGGTACTTTAAACAAAAATATTACGCCCAAAAAATAAGTTT
ATACAAAAAATAAAACTCATTTAAAAAATGAGTTGAGCCTTAGCTTCAACATTTAAGGCTTGACT
CAACTCATTTTGTAATTGTATAATATATTATTTTTATTTATATATATTATGCAATTCATATCACG
TAAATATTAGATATATAATATTATAATATAAAACATTAAAAAATATGCCATAAAGTCTATGTTTA
AAAACTAATATAAAAAATATAAAATCACTAAATATATTTTTAACAAATATAAACTTAATCGAT
Found at i:789241 original size:20 final size:20
Alignment explanation
Indices: 789208--789245 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
789198 TATTTTTATT
789208 TAAATTTAATTATAAAAATA
1 TAAATTTAATTATAAAAATA
789228 TAAATATTAA-TATAAAAA
1 TAAAT-TTAATTATAAAAA
789246 GATATATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAATTTAATTATAAAAATA
Found at i:790532 original size:22 final size:21
Alignment explanation
Indices: 790494--790542 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
790484 TTACTAAATT
*
790494 TAAATTCTTACTTATAATTTAAA
1 TAAA-TCTTACTTATAA-TAAAA
790517 TAAATCTTA-TTAATAATAAAA
1 TAAATCTTACTT-ATAATAAAA
790538 TAAAT
1 TAAAT
790543 TATAATGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 11 0.46
22 9 0.38
23 4 0.17
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAATCTTACTTATAATAAAA
Found at i:790991 original size:17 final size:18
Alignment explanation
Indices: 790969--791002 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
790959 AGAGATGCAT
790969 ATTTACTTTTTT-TTTTA
1 ATTTACTTTTTTCTTTTA
790986 ATTTACTTTTTTCTTTT
1 ATTTACTTTTTTCTTTT
791003 CCTTTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTACTTTTTTCTTTTA
Found at i:800212 original size:26 final size:26
Alignment explanation
Indices: 800183--800235 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
800173 GTTGTTTTAT
800183 TGATGATCACACTCGTGTATGTTGGG
1 TGATGATCACACTCGTGTATGTTGGG
800209 TGATGATCACACTCGTGTATGTTGGG
1 TGATGATCACACTCGTGTATGTTGGG
800235 T
1 T
800236 TTATCTGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.15, G:0.30, T:0.36
Consensus pattern (26 bp):
TGATGATCACACTCGTGTATGTTGGG
Found at i:802328 original size:206 final size:206
Alignment explanation
Indices: 801974--802379 Score: 695
Period size: 206 Copynumber: 2.0 Consensus size: 206
801964 GAGGTAGTTA
* *
801974 GAAGCAAACAATGTATTTTTATATCACAAAGGAAGTATACTCTTAACCTATTAAAGGAAATTGGG
1 GAAGCAAACAATGTATTTTTATATCACAAAGGAAGTATACTCTCAACCTATTAAAGGAAACTGGG
* *
802039 AAACTTGGGTGCAAACCAGCTGGAACTCCACTTGAAAGAAATTGAAAAAGTAAGATCATCGAGGA
66 AAACTTGGGTGCAAACCAGCTGGAACTCCACTTGAAAGAAATTGAAAAAGTAACATCACCGAGGA
*
802104 TGATCCACCTGTGGATAAGAGCAAATACCAACAATTGGTAGGAAAGTTGATATACTTGTCACTCA
131 TGATCCACCTATGGATAAGAGCAAATACCAACAATTGGTAGGAAAGTTGATATACTTGTCACTCA
802169 CTAGATAGCTG
196 CTAGATAGCTG
* *
802180 GAAGCAAACAATGTATTTTTATATCACAAAGGAAGTATACTCTCGACTTATTAAAGGAAACTGGG
1 GAAGCAAACAATGTATTTTTATATCACAAAGGAAGTATACTCTCAACCTATTAAAGGAAACTGGG
** * * *
802245 AAACTTGGGTGCAAATTAGTTGGAACTCCACTTGAAAGAAATTGGAAGAGTAACATCACCGAGGA
66 AAACTTGGGTGCAAACCAGCTGGAACTCCACTTGAAAGAAATTGAAAAAGTAACATCACCGAGGA
*
802310 TGATCCACCTATGGATAAGAGCAAATACCAACAATTGGTAGGAAAGTTGATATACTTGTCACTTA
131 TGATCCACCTATGGATAAGAGCAAATACCAACAATTGGTAGGAAAGTTGATATACTTGTCACTCA
802375 CTAGA
196 CTAGA
802380 CCTGATATTG
Statistics
Matches: 187, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
206 187 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (206 bp):
GAAGCAAACAATGTATTTTTATATCACAAAGGAAGTATACTCTCAACCTATTAAAGGAAACTGGG
AAACTTGGGTGCAAACCAGCTGGAACTCCACTTGAAAGAAATTGAAAAAGTAACATCACCGAGGA
TGATCCACCTATGGATAAGAGCAAATACCAACAATTGGTAGGAAAGTTGATATACTTGTCACTCA
CTAGATAGCTG
Found at i:808459 original size:20 final size:19
Alignment explanation
Indices: 808434--808490 Score: 64
Period size: 18 Copynumber: 3.0 Consensus size: 19
808424 TTATTTTTAA
*
808434 TATATTTATTTATTAAAATT
1 TATATTTATATA-TAAAATT
808454 TATATTTATATATAAAA-T
1 TATATTTATATATAAAATT
*
808472 TA-ATTTGTTATATAAAATT
1 TATATTT-ATATATAAAATT
808491 AATTTTTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 4 0.12
18 12 0.36
19 6 0.18
20 11 0.33
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATATTTATATATAAAATT
Found at i:809278 original size:14 final size:14
Alignment explanation
Indices: 809244--809278 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
809234 TATCATTAGT
* *
809244 TAATATAATAATAA
1 TAATATTATAAGAA
809258 TAATATTATAAGAA
1 TAATATTATAAGAA
809272 TAATATT
1 TAATATT
809279 CAAATAAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (14 bp):
TAATATTATAAGAA
Found at i:813383 original size:15 final size:16
Alignment explanation
Indices: 813365--813401 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
813355 AGGAAATGAG
*
813365 AGAAAAG-AACAAAAA
1 AGAAAAGAAAAAAAAA
813380 AGAAAAGAAAAAAAAA
1 AGAAAAGAAAAAAAAA
813396 AGAAAA
1 AGAAAA
813402 AACCTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (16 bp):
AGAAAAGAAAAAAAAA
Found at i:813396 original size:11 final size:12
Alignment explanation
Indices: 813375--813403 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
813365 AGAAAAGAAC
813375 AAAAAAGAAAAG
1 AAAAAAGAAAAG
813387 AAAAAA-AAAAG
1 AAAAAAGAAAAG
813398 AAAAAA
1 AAAAAA
813404 CCTAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:815766 original size:11 final size:11
Alignment explanation
Indices: 815750--815790 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
815740 AGGAAACCAA
815750 AAAAAAAAGAG
1 AAAAAAAAGAG
*
815761 AAAAAAGAGAG
1 AAAAAAAAGAG
*
815772 AGAAAAAAAGAC
1 A-AAAAAAAGAG
815784 AAAAAAA
1 AAAAAAA
815791 GAGTTTCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:815781 original size:23 final size:22
Alignment explanation
Indices: 815751--815793 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
815741 GGAAACCAAA
*
815751 AAAAAAAGAGAAAAAAGAGAGAG
1 AAAAAAAGACAAAAAA-AGAGAG
815774 AAAAAAAGACAAAAAAAGAG
1 AAAAAAAGACAAAAAAAGAG
815794 TTTCTTCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAAAAAGACAAAAAAAGAGAG
Found at i:816618 original size:29 final size:29
Alignment explanation
Indices: 816538--816619 Score: 68
Period size: 29 Copynumber: 2.9 Consensus size: 29
816528 GTCATTTCTT
816538 ATGATTTATGATCA--TATGTGA--TTTC
1 ATGATTTATGATCATTTATGTGATTTTTC
* * *
816563 ATGCATTT-TAAGGCATCTTA-GTCATTTTTC
1 ATG-ATTTATGA-TCAT-TTATGTGATTTTTC
816593 ATGATTTATGATCATTTATGTGATTTT
1 ATGATTTATGATCATTTATGTGATTTT
816620 ATGCATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
25 5 0.12
26 6 0.14
28 6 0.14
29 16 0.38
30 9 0.21
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.50
Consensus pattern (29 bp):
ATGATTTATGATCATTTATGTGATTTTTC
Found at i:816646 original size:113 final size:112
Alignment explanation
Indices: 816438--816666 Score: 261
Period size: 113 Copynumber: 2.1 Consensus size: 112
816428 TTATTATAAT
* * * *
816438 TATGTAATTTCATCCATTTTAGGGTCATTTTAGCCATTTTTTATGGTTTATGACCATTCATGTGA
1 TATGTAATTTCATCCATTTTAAGGTCATCTTAGCCATTTTTCATGATTTATGACCATTCATGTGA
* * *
816503 TTTTATGCATTTTAAGGTCCTTATAGTCATTTCTTATGATTTATGATCA
66 TTTTATGCATTTTAAGGGCATTATAGTCA-TTC-CATGATTTATGATCA
* * * * *
816552 TATGTGATTTCATGCATTTTAAGG-CATCTTAGTCATTTTTCATGATTTATGATCATTTATGTGA
1 TATGTAATTTCATCCATTTTAAGGTCATCTTAGCCATTTTTCATGATTTATGACCATTCATGTGA
**
816616 TTTTATGCATTTTGGGGGCATGCT-TA-TCATTCCATGATTTATGA-C-
66 TTTTATGCATTTTAAGGGCAT--TATAGTCATTCCATGATTTATGATCA
816661 TATGTA
1 TATGTA
816667 TGTAAATTTA
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
109 5 0.05
110 1 0.01
111 11 0.11
112 3 0.03
113 54 0.55
114 23 0.23
115 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.48
Consensus pattern (112 bp):
TATGTAATTTCATCCATTTTAAGGTCATCTTAGCCATTTTTCATGATTTATGACCATTCATGTGA
TTTTATGCATTTTAAGGGCATTATAGTCATTCCATGATTTATGATCA
Found at i:816812 original size:58 final size:58
Alignment explanation
Indices: 816750--817222 Score: 179
Period size: 58 Copynumber: 8.4 Consensus size: 58
816740 TTAAAACCAA
816750 TTTAGTCATTTTCTATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
1 TTTAGTCATTTTCTATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
* * * * * * * *
816808 TTTAGTCAATTTTC-ATTACTTAGGGACCTTTTTTAT--TATTTCACGTACTTTA--ATGTCAT
1 TTTAGTC-ATTTTCTATGATTTAAGGA---TTATTATGCAAATTCATGTATTTTAGGAT-T-AT
* * * * * *
816867 TTTAGTAATTTACCATGATTTAAGACCATT-TT-TGC--ATTCCCATGTACTTTAGAATTAT
1 TTTAGTCATTTTCTATGATTTAAG--GATTATTATGCAAATT--CATGTATTTTAGGATTAT
* * * * * * *
816925 TTTAGTAATTTACCATGATTT-AGGATCATTTATGCAATTTTATGTATTTTAAGG-TCAT
1 TTTAGTCATTTTCTATGATTTAAGGATTA-TTATGCAAATTCATGTATTTT-AGGATTAT
* * * * *** * * * *
816983 TCTAATAATTTT-TCATGATTTAGGGATTATTAAATAATTTCATGCATTTTAAGACTAT
1 TTTAGTCATTTTCT-ATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
* * **
817041 TTTAGTCGTTTTTTATGATTTAAGGACCATTATGCAAATTCAT-TA--TT--G-----
1 TTTAGTCATTTTCTATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
* * ** * * *
817089 --TAGTCATTTTCTAAGATTTAGGGACCA-TATGCAAATTCATGTATTTAAAG-TCAT
1 TTTAGTCATTTTCTATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
* * * * * ** *
817143 GTTAGTAATTTTCTATGACTTAAGGATTATTATGTAATTTCATACATTTTAGGATCAT
1 TTTAGTCATTTTCTATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
*
817201 TCTAGTCATTTTCTATGATTTA
1 TTTAGTCATTTTCTATGATTTA
817223 GGTTAATTAT
Statistics
Matches: 307, Mismatches: 70, Indels: 76
0.68 0.15 0.17
Matches are distributed among these distances:
45 13 0.04
46 25 0.08
48 1 0.00
50 1 0.00
53 1 0.00
55 4 0.01
56 24 0.08
57 28 0.09
58 157 0.51
59 42 0.14
60 4 0.01
61 7 0.02
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.47
Consensus pattern (58 bp):
TTTAGTCATTTTCTATGATTTAAGGATTATTATGCAAATTCATGTATTTTAGGATTAT
Found at i:816896 original size:29 final size:29
Alignment explanation
Indices: 816863--816955 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
816853 TACTTTAATG
816863 TCATTTTAGTAATTTACCATGATTTAAGA
1 TCATTTTAGTAATTTACCATGATTTAAGA
* * * *
816892 CCATTTTTG-CA-TTCCCATGTACTTT-AGAA
1 TCATTTTAGTAATTTACCATG-A-TTTAAG-A
* *
816921 TTATTTTAGTAATTTACCATGATTTAGGA
1 TCATTTTAGTAATTTACCATGATTTAAGA
816950 TCATTT
1 TCATTT
816956 ATGCAATTTT
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
27 7 0.15
28 4 0.09
29 26 0.55
30 3 0.06
31 7 0.15
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (29 bp):
TCATTTTAGTAATTTACCATGATTTAAGA
Found at i:817107 original size:46 final size:46
Alignment explanation
Indices: 817038--817133 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 46
817028 ATTTTAAGAC
* * * *
817038 TATTTTAGTCGTTTTTTATGATTTAAGGACCATTATGCAAATTCAT-
1 TATTGTAGTCATTTTCTAAGATTTAAGGACCA-TATGCAAATTCATG
*
817084 TATTGTAGTCATTTTCTAAGATTTAGGGACCATATGCAAATTCATG
1 TATTGTAGTCATTTTCTAAGATTTAAGGACCATATGCAAATTCATG
817130 TATT
1 TATT
817134 TAAAGTCATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 13 0.30
46 31 0.70
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (46 bp):
TATTGTAGTCATTTTCTAAGATTTAAGGACCATATGCAAATTCATG
Found at i:817442 original size:78 final size:78
Alignment explanation
Indices: 817306--817484 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 78
817296 TTTATGCATT
*
817306 TTAGGATTATTTAGGTAATAA-TACCTTATAATCGAGTTCTTAGGGCTATGCAGCAACC-TTAGT
1 TTAGGATTATTTAGGTAA-AAGTACCTTAAAATCGAGTTCTTAGGGCTATGCAGCAACCTTTA-T
*
817369 GTCAAAATATGTCCA
64 GTCAAAAAATGTCCA
* * * * * *
817384 TTAGGATCATTTAGGTAAAAGTACTTTAAAATTGAGTTCTTATGGCTATGTAGGAACCTTTATGT
1 TTAGGATTATTTAGGTAAAAGTACCTTAAAATCGAGTTCTTAGGGCTATGCAGCAACCTTTATGT
817449 CAAAAAATGTCCA
66 CAAAAAATGTCCA
*
817462 TTAAGG-TTATTTAGGGAAAAGTA
1 TT-AGGATTATTTAGGTAAAAGTA
817485 TCTTGAAACC
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
77 2 0.02
78 80 0.91
79 6 0.07
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (78 bp):
TTAGGATTATTTAGGTAAAAGTACCTTAAAATCGAGTTCTTAGGGCTATGCAGCAACCTTTATGT
CAAAAAATGTCCA
Found at i:818802 original size:20 final size:20
Alignment explanation
Indices: 818777--818826 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
818767 TTGCATACAT
818777 GAAAACACGATTTAGATTTC
1 GAAAACACGATTTAGATTTC
818797 GAAAACACGATTTAGATTTC
1 GAAAACACGATTTAGATTTC
*
818817 GAAAATACGA
1 GAAAACACGA
818827 CAATACTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.26
Consensus pattern (20 bp):
GAAAACACGATTTAGATTTC
Found at i:819234 original size:29 final size:29
Alignment explanation
Indices: 819192--819250 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
819182 CTATTTTTTT
819192 TTTGGTTTTCAAGCAAAACTTAAAATCAA
1 TTTGGTTTTCAAGCAAAACTTAAAATCAA
819221 TTTGGTTTTCAAGCAAAACTTAAAATCAA
1 TTTGGTTTTCAAGCAAAACTTAAAATCAA
819250 T
1 T
819251 CTTTTTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.36
Consensus pattern (29 bp):
TTTGGTTTTCAAGCAAAACTTAAAATCAA
Found at i:826550 original size:18 final size:17
Alignment explanation
Indices: 826524--826591 Score: 54
Period size: 18 Copynumber: 4.1 Consensus size: 17
826514 GATACGATAC
*
826524 AAATATATGAATATATCA
1 AAATTTATGAATATAT-A
826542 AAATTTATG--TA-ATA
1 AAATTTATGAATATATA
* *
826556 AAAATTATTAATATATTA
1 AAATTTATGAATATA-TA
826574 AAATTTAT-ATATATATA
1 AAATTTATGA-ATATATA
826591 A
1 A
826592 TACTTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
14 8 0.20
15 2 0.05
16 4 0.10
17 5 0.12
18 22 0.54
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (17 bp):
AAATTTATGAATATATA
Found at i:826615 original size:11 final size:11
Alignment explanation
Indices: 826599--826640 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
826589 TAATACTTTA
*
826599 AATATAATTAT
1 AATATAAATAT
*
826610 AATATAAAAAT
1 AATATAAATAT
826621 AATATAAATAT
1 AATATAAATAT
*
826632 AATAAAAAT
1 AATATAAAT
826641 TCACAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AATATAAATAT
Found at i:826624 original size:22 final size:21
Alignment explanation
Indices: 826599--826639 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
826589 TAATACTTTA
*
826599 AATATAATTATAATATAAAAAT
1 AATATAAATATAATA-AAAAAT
826621 AATATAAATATAATAAAAA
1 AATATAAATATAATAAAAA
826640 TTCACAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATAAATATAATAAAAAAT
Found at i:828971 original size:20 final size:21
Alignment explanation
Indices: 828946--828984 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
828936 ACACTCTTCA
828946 TTCTTTTCCTGTT-TTTTTTT
1 TTCTTTTCCTGTTATTTTTTT
*
828966 TTCTTTTTCTGTTATTTTT
1 TTCTTTTCCTGTTATTTTT
828985 CCACCCTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.03, C:0.13, G:0.05, T:0.79
Consensus pattern (21 bp):
TTCTTTTCCTGTTATTTTTTT
Found at i:834991 original size:15 final size:16
Alignment explanation
Indices: 834971--835010 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
834961 ATTATATAAA
834971 TTAATTAATATAA-TT
1 TTAATTAATATAACTT
*
834986 TTAATTAATTTAACTT
1 TTAATTAATATAACTT
*
835002 GTAATTAAT
1 TTAATTAAT
835011 TGAATCAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
TTAATTAATATAACTT
Found at i:835853 original size:28 final size:27
Alignment explanation
Indices: 835822--835902 Score: 82
Period size: 28 Copynumber: 3.1 Consensus size: 27
835812 TTTTATTTAT
*
835822 TATTAAAAAATTATTATATTAATATAAA
1 TATTAAAATATT-TTATATTAATATAAA
*
835850 TATTAATAT-TTTTATAATTAAATATAAA
1 TATTAAAATATTTTAT-ATT-AATATAAA
835878 TA--AAAATATTTT-TATTAAT-TAAA
1 TATTAAAATATTTTATATTAATATAAA
835901 TA
1 TA
835903 ATTATTTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
23 6 0.13
24 3 0.06
25 3 0.06
26 9 0.19
27 9 0.19
28 17 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
TATTAAAATATTTTATATTAATATAAA
Found at i:836369 original size:29 final size:29
Alignment explanation
Indices: 836335--836408 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
836325 ATTTTTTAAA
*
836335 AAAATAAATTTTTATATTTTTA-TTATAT
1 AAAATAAATTTTTATATTTTGAGTTATAT
* *
836363 CAAAATAAATTTTTTTCTTTTGAGTTATAT
1 -AAAATAAATTTTTATATTTTGAGTTATAT
*
836393 ATAAATTAATTTTTAT
1 A-AAATAAATTTTTAT
836409 TCAAATAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
29 20 0.53
30 18 0.47
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (29 bp):
AAAATAAATTTTTATATTTTGAGTTATAT
Found at i:836446 original size:22 final size:23
Alignment explanation
Indices: 836395--836437 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
836385 AGTTATATAT
*
836395 AAATTAATTTTTATTCAAATAAA
1 AAATTAATTTATATTCAAATAAA
836418 AAATTAATTTATATT-AAATA
1 AAATTAATTTATATTCAAATA
836438 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
AAATTAATTTATATTCAAATAAA
Found at i:836473 original size:7 final size:7
Alignment explanation
Indices: 836451--836476 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
836441 AATTAAATAT
836451 AAATTAA
1 AAATTAA
836458 AAATTAA
1 AAATTAA
836465 AAATTAA
1 AAATTAA
836472 AAATT
1 AAATT
836477 TATTTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AAATTAA
Found at i:836563 original size:22 final size:23
Alignment explanation
Indices: 836538--836587 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
836528 TTAAAATTTT
836538 ATTTTAA-TATAATAAAA-ATAAA
1 ATTTTAATTA-AATAAAAGATAAA
836560 ATTTTAATTAAATAAAATGATAAA
1 ATTTTAATTAAATAAAA-GATAAA
836584 ATTT
1 ATTT
836588 AACTATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 14 0.56
23 2 0.08
24 9 0.36
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
ATTTTAATTAAATAAAAGATAAA
Found at i:838091 original size:238 final size:229
Alignment explanation
Indices: 837666--838101 Score: 538
Period size: 238 Copynumber: 1.9 Consensus size: 229
837656 TCAACTGCTT
* * * *
837666 ATGAATGGATTAAAACTTTTGAAATTACTCATTGAGATCAGTTGTGAAGTCAGAGAGGGGAGGAA
1 ATGAATGGAGTAAAACTTTTGAAATTACTCATCGAGATCAGTTGCGAAGTCA-AGAGGGAAGGAA
* *
837731 ATGTCTTCATCTTAACTATTTAAGCTGTTGGAATTTTGTTCTTTAAGTTAAGCTTAGTATTAGGA
65 ATGTCTTCATCTTAACTATTTAAGCTGTTGGAATTTTGTTCTTTAAGTAAAACTTAGTATTAGGA
* * *
837796 CTGTATAAACTTCATTTGTTTTAATCATAAGAAATCTGGACTTCTCATAAATTTTTTTTTTTCCA
130 CAGTAAAAACTTCATTTGTTTTAATCATAAGAAATCTGGACTACTCATAAATTTTTTTTTTTCCA
837861 TTTTAGCCATTTGTCATTGATTGATTTTGCTTCTG
195 TTTTAGCCATTTGTCATTGATTGATTTTGCTTCTG
* *
837896 ATGAATGGAGTAAAATTTTTGAAATTACTCATCGAGATCAGTTGCGAAGTC-AGAGGGAAGGAGA
1 ATGAATGGAGTAAAACTTTTGAAATTACTCATCGAGATCAGTTGCGAAGTCAAGAGGGAAGGAAA
* * * ** * *
837960 TGTCTTCTTTTTGACTATTTAAGCTGTTGGGTTTTTTTTTCTTTCGCATGGCTGAGTAAAATTTA
66 TGTCTTCATCTTAACTATTTAAGCTGTT-GGAATTTTGTTCTTT---A------AGTAAAACTTA
* * *
838025 GTATTAGGACAGTAAAAACTTGATTTGTTTTAATCAT-AGTAAATCTGGACTAGTCAT-GATTTT
121 GTATTAGGACAGTAAAAACTTCATTTGTTTTAATCATAAG-AAATCTGGACTACTCATAAATTTT
*
838088 TTTTCTT-CATTTTA
185 TTTTTTTCCATTTTA
838102 ATTATCTGTC
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
228 36 0.21
229 12 0.07
230 47 0.27
232 1 0.01
236 7 0.04
237 13 0.08
238 57 0.33
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (229 bp):
ATGAATGGAGTAAAACTTTTGAAATTACTCATCGAGATCAGTTGCGAAGTCAAGAGGGAAGGAAA
TGTCTTCATCTTAACTATTTAAGCTGTTGGAATTTTGTTCTTTAAGTAAAACTTAGTATTAGGAC
AGTAAAAACTTCATTTGTTTTAATCATAAGAAATCTGGACTACTCATAAATTTTTTTTTTTCCAT
TTTAGCCATTTGTCATTGATTGATTTTGCTTCTG
Found at i:839548 original size:32 final size:30
Alignment explanation
Indices: 839482--839550 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 30
839472 ATATTGATGG
* * **
839482 TAAATTTGATGAATTAAATATAATTATTTT
1 TAAATTTAATGAATTAAATAAAATTATTCA
*
839512 TAAATTTAATGAATATTAAATAAAATTGTTCA
1 TAAATTTAATG-A-ATTAAATAAAATTATTCA
839544 TAAATTT
1 TAAATTT
839551 GATAAATTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 10 0.31
31 1 0.03
32 21 0.66
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.46
Consensus pattern (30 bp):
TAAATTTAATGAATTAAATAAAATTATTCA
Found at i:840037 original size:46 final size:46
Alignment explanation
Indices: 839970--840062 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
839960 AGGAGTGAGG
839970 AGGTCAGCAGGGGAGATTGGCTCACATTTCCAATCTTCCTCGCACC
1 AGGTCAGCAGGGGAGATTGGCTCACATTTCCAATCTTCCTCGCACC
*
840016 AGGTCAGCAGGGGAGATTGGCTCACGTTTCCAATCTTCCTCGCACC
1 AGGTCAGCAGGGGAGATTGGCTCACATTTCCAATCTTCCTCGCACC
840062 A
1 A
840063 TATTTGATCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.24
Consensus pattern (46 bp):
AGGTCAGCAGGGGAGATTGGCTCACATTTCCAATCTTCCTCGCACC
Found at i:841402 original size:27 final size:26
Alignment explanation
Indices: 841342--841403 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
841332 TAGAGTAATT
841342 AGTAAATTAAAATATTTAAATAAATAA
1 AGTAAA-TAAAATATTTAAATAAATAA
* **
841369 A-TAAAATAAAATATTTTAATATTTTAA
1 AGT-AAATAAAATATTTAAATA-AATAA
841396 AGTAAATA
1 AGTAAATA
841404 GTATTAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 15 0.52
27 13 0.45
28 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (26 bp):
AGTAAATAAAATATTTAAATAAATAA
Found at i:842048 original size:57 final size:59
Alignment explanation
Indices: 841987--842097 Score: 172
Period size: 57 Copynumber: 1.9 Consensus size: 59
841977 AAAAATTTTC
* * *
841987 TTTAATTTAAATTACTATGATAAATTA-TAAAAAA-ATGTAATGAATTGAGACATGATT
1 TTTAAATTAAATTACTATGACAAATTACGAAAAAATATGTAATGAATTGAGACATGATT
*
842044 TTTAAATTAAATTACTATGACAAATTACGAAAAAATATGTTATGAATTGAGACA
1 TTTAAATTAAATTACTATGACAAATTACGAAAAAATATGTAATGAATTGAGACA
842098 CGACATGTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
57 25 0.52
58 6 0.12
59 17 0.35
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.36
Consensus pattern (59 bp):
TTTAAATTAAATTACTATGACAAATTACGAAAAAATATGTAATGAATTGAGACATGATT
Found at i:842889 original size:19 final size:20
Alignment explanation
Indices: 842856--842897 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
842846 TTTTCTTTTT
*
842856 CTTTTCTTTCTTTCTCTCTC
1 CTTTTCTTTCTTTCTCTCCC
*
842876 CTTTTTTTTC-TTCTCTCCC
1 CTTTTCTTTCTTTCTCTCCC
842895 CTT
1 CTT
842898 ATGAGCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTTCTTTCTTTCTCTCCC
Found at i:843396 original size:19 final size:19
Alignment explanation
Indices: 843372--843423 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
843362 AACCCTTGAA
843372 TGTATCGATACATGTTAAT
1 TGTATCGATACATGTTAAT
843391 TGTATCGATACATGTTAAT
1 TGTATCGATACATGTTAAT
*
843410 TTTATCGATACATG
1 TGTATCGATACATG
843424 AGATTGACAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATGTTAAT
Found at i:845072 original size:13 final size:13
Alignment explanation
Indices: 845054--845079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
845044 CAATTTTTTG
845054 TGTATCGATACAT
1 TGTATCGATACAT
845067 TGTATCGATACAT
1 TGTATCGATACAT
845080 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:845076 original size:33 final size:33
Alignment explanation
Indices: 845034--845098 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
845024 TACAAGCTAA
* *
845034 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
845067 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
845099 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:847349 original size:279 final size:279
Alignment explanation
Indices: 846849--847408 Score: 1120
Period size: 279 Copynumber: 2.0 Consensus size: 279
846839 ACCGGTTCAT
846849 GAAGTTCCAAAAGTGTGAGCCAACTAAACATCTCAAGTGTTGGATAGTAAATAAAGTCGAATGAC
1 GAAGTTCCAAAAGTGTGAGCCAACTAAACATCTCAAGTGTTGGATAGTAAATAAAGTCGAATGAC
846914 CTGAGATACTTCATGTCGACAGCGCGACATGGTCGATAGCCAACCGAGAAAAGGTTCGATTGAAA
66 CTGAGATACTTCATGTCGACAGCGCGACATGGTCGATAGCCAACCGAGAAAAGGTTCGATTGAAA
846979 TGGTTGAGGTTGGCTTGAGTACGAAAACAACCTTCGAAGAAGGTTTGATTTTGTGGATTCGAGGT
131 TGGTTGAGGTTGGCTTGAGTACGAAAACAACCTTCGAAGAAGGTTTGATTTTGTGGATTCGAGGT
847044 GGAGGCACCTCGAGGATGTTTCTGAGCTGTTGATTTCATCCGAGGGGCCATCGGAATGAATCGAA
196 GGAGGCACCTCGAGGATGTTTCTGAGCTGTTGATTTCATCCGAGGGGCCATCGGAATGAATCGAA
847109 GATGTTTTGGTGTTAAACC
261 GATGTTTTGGTGTTAAACC
847128 GAAGTTCCAAAAGTGTGAGCCAACTAAACATCTCAAGTGTTGGATAGTAAATAAAGTCGAATGAC
1 GAAGTTCCAAAAGTGTGAGCCAACTAAACATCTCAAGTGTTGGATAGTAAATAAAGTCGAATGAC
847193 CTGAGATACTTCATGTCGACAGCGCGACATGGTCGATAGCCAACCGAGAAAAGGTTCGATTGAAA
66 CTGAGATACTTCATGTCGACAGCGCGACATGGTCGATAGCCAACCGAGAAAAGGTTCGATTGAAA
847258 TGGTTGAGGTTGGCTTGAGTACGAAAACAACCTTCGAAGAAGGTTTGATTTTGTGGATTCGAGGT
131 TGGTTGAGGTTGGCTTGAGTACGAAAACAACCTTCGAAGAAGGTTTGATTTTGTGGATTCGAGGT
847323 GGAGGCACCTCGAGGATGTTTCTGAGCTGTTGATTTCATCCGAGGGGCCATCGGAATGAATCGAA
196 GGAGGCACCTCGAGGATGTTTCTGAGCTGTTGATTTCATCCGAGGGGCCATCGGAATGAATCGAA
847388 GATGTTTTGGTGTTAAACC
261 GATGTTTTGGTGTTAAACC
847407 GA
1 GA
847409 GGTTTTTCGG
Statistics
Matches: 281, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
279 281 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (279 bp):
GAAGTTCCAAAAGTGTGAGCCAACTAAACATCTCAAGTGTTGGATAGTAAATAAAGTCGAATGAC
CTGAGATACTTCATGTCGACAGCGCGACATGGTCGATAGCCAACCGAGAAAAGGTTCGATTGAAA
TGGTTGAGGTTGGCTTGAGTACGAAAACAACCTTCGAAGAAGGTTTGATTTTGTGGATTCGAGGT
GGAGGCACCTCGAGGATGTTTCTGAGCTGTTGATTTCATCCGAGGGGCCATCGGAATGAATCGAA
GATGTTTTGGTGTTAAACC
Found at i:847932 original size:13 final size:13
Alignment explanation
Indices: 847914--847938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
847904 ATAAACCCCC
847914 TGTATCGATACAG
1 TGTATCGATACAG
847927 TGTATCGATACA
1 TGTATCGATACA
847939 TTGAATTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:854081 original size:13 final size:13
Alignment explanation
Indices: 854063--854088 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
854053 CAATTTTTTG
854063 TGTATCGATACAT
1 TGTATCGATACAT
854076 TGTATCGATACAT
1 TGTATCGATACAT
854089 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:854085 original size:33 final size:33
Alignment explanation
Indices: 854043--854107 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
854033 TACAAGCCAA
* *
854043 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
854076 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
854108 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:855153 original size:38 final size:38
Alignment explanation
Indices: 855070--855149 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
855060 AAATATATTT
* *
855070 TAATAATTTGAGATAAATATAACTTTAGTGATTTTTAA
1 TAATTATTTGAGATAAATATAACTTTAATGATTTTTAA
* * *
855108 TTATTATTTGATATAAATATAATTTTAAT-ATTTTTAA
1 TAATTATTTGAGATAAATATAACTTTAATGATTTTTAA
855145 TAATT
1 TAATT
855150 TATTAATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.51
Consensus pattern (38 bp):
TAATTATTTGAGATAAATATAACTTTAATGATTTTTAA
Found at i:857538 original size:48 final size:48
Alignment explanation
Indices: 857420--857530 Score: 206
Period size: 48 Copynumber: 2.3 Consensus size: 48
857410 ATTTCATTTG
857420 AATT-ATTATATATATATATATAATTTATTTATATCAACATAAAATTA
1 AATTAATTATATATATATATATAATTTATTTATATCAACATAAAATTA
857467 AATTAATTATATATATATATATAATTTATTTATATCAACATAAAATTA
1 AATTAATTATATATATATATATAATTTATTTATATCAACATAAAATTA
*
857515 AATTAATTTTATATAT
1 AATTAATTATATATAT
857531 TTTTATAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
47 4 0.06
48 58 0.94
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.48
Consensus pattern (48 bp):
AATTAATTATATATATATATATAATTTATTTATATCAACATAAAATTA
Found at i:857831 original size:25 final size:27
Alignment explanation
Indices: 857802--857873 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 27
857792 TTATAAAAAA
857802 ATATAAAATTAATTTAATTTTATAT-C
1 ATATAAAATTAATTTAATTTTATATAC
* *
857828 -TATAAAAATAAATT--TTTTATATAC
1 ATATAAAATTAATTTAATTTTATATAC
*
857852 ATATAAACTTAATAATTAATTT
1 ATATAAAATTAAT--TTAATTT
857874 GATACTTCGA
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
23 8 0.23
24 1 0.03
25 21 0.60
27 2 0.06
29 3 0.09
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (27 bp):
ATATAAAATTAATTTAATTTTATATAC
Found at i:866916 original size:13 final size:13
Alignment explanation
Indices: 866898--866924 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
866888 TACAAAACTT
866898 ATATATCGATACA
1 ATATATCGATACA
866911 ATATATCGATACA
1 ATATATCGATACA
866924 A
1 A
866925 CACTTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
ATATATCGATACA
Found at i:867840 original size:58 final size:58
Alignment explanation
Indices: 867731--867840 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 58
867721 TGAAGAAAAA
* * **
867731 TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGGGCTTAGGAATGTTAAAGATGAAGG
1 TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGGACTTAAGAATGACAAAGATGAAGG
* ** *
867789 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAA-AGATGACAAAGA
1 TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGGACTTAAGA-ATGACAAAGA
867841 CGCCAATATG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
57 1 0.02
58 42 0.98
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (58 bp):
TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGGACTTAAGAATGACAAAGATGAAGG
Found at i:867955 original size:43 final size:43
Alignment explanation
Indices: 867894--868258 Score: 379
Period size: 49 Copynumber: 7.9 Consensus size: 43
867884 TGACAAAGGC
*
867894 GCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
* * *
867937 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGT
*
867986 GCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
* * *
868029 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGT
868078 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
* * *
868121 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGT
*
868170 GCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGAGGTGCCAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----G-G----AGGT
868222 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
868259 AGAAGAAGAC
Statistics
Matches: 276, Mismatches: 24, Indels: 35
0.82 0.07 0.10
Matches are distributed among these distances:
43 108 0.39
44 2 0.01
46 5 0.02
48 3 0.01
49 115 0.42
50 2 0.01
52 41 0.15
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (43 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
Found at i:868021 original size:92 final size:92
Alignment explanation
Indices: 867842--868217 Score: 626
Period size: 92 Copynumber: 4.1 Consensus size: 92
867832 TGACAAAGAC
* * * * * * *
867842 GCCAATATGCTGATTCAAGGCTAGCGATATAGGACTTAAGGATGACAAAGGCGCCAATATGCTGA
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATATGCTGA
*
867907 TTCAAGGCCAACGATATTGGACTTGGAGGT
63 TTCAAGGCCAGCGATATTGGACTTGGAGGT
867937 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
868002 AAGGCTAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
868029 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
868094 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
868121 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
* *
868186 AAGGCCAGCAATATTGGACTTAGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
868213 GCCAA
1 GCCAA
868218 AGGTGCCAAT
Statistics
Matches: 269, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
92 231 0.86
95 38 0.14
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTGGAGGT
Found at i:868161 original size:184 final size:185
Alignment explanation
Indices: 867776--868217 Score: 634
Period size: 184 Copynumber: 2.3 Consensus size: 185
867766 CTTAGGAATG
* * * *
867776 TTAAAGATGAAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT--AGA-G-----G-
* * * *
867841 CGCCAATATGCTGATTCAAGGCTAGCGATATAGGACTTAAGGATGACAAAGGCGCCAATATGCTG
57 TGCCAATATGCTGATTCAAGGCCAGCGACATAGGACTTAAAGATG--AAAGGCGCCAATATGCTG
867906 ATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
120 ATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
867971 C
185 C
* * * *
867972 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAGGTGCCAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGAGGTGCCAATAT
* * *
868037 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AAGGTGCCAATATGCTGATTCAAGGCCA
66 GCTGATTCAAGGCCAGCGACATAGGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCA
*
868101 GCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
131 ACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
868156 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGAGGTGCCAA
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGAGGTGCCAA
868218 AGGTGCCAAT
Statistics
Matches: 229, Mismatches: 17, Indels: 12
0.89 0.07 0.05
Matches are distributed among these distances:
184 140 0.61
187 38 0.17
188 1 0.00
193 1 0.00
194 2 0.01
196 47 0.21
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (185 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGAGGTGCCAATAT
GCTGATTCAAGGCCAGCGACATAGGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCA
ACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
Found at i:868338 original size:28 final size:28
Alignment explanation
Indices: 868307--868432 Score: 162
Period size: 28 Copynumber: 4.4 Consensus size: 28
868297 GTTTGCATCA
* * * *
868307 ACTTGTGTGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTCTAAAGATTGCCACTG
868335 ACTTGTGGGCTTCTAAAGATTGCCACTG
1 ACTTGTGGGCTTCTAAAGATTGCCACTG
868363 ACTTGTGGGCTTCTAAAGATTGCCACTG
1 ACTTGTGGGCTTCTAAAGATTGCCACTG
* ** *
868391 ACTTGTGGGCTTTTGAAAAGGGTGCCACTA
1 ACTTGTGGGCTTCT--AAAGATTGCCACTG
868421 ACTTGTGGGCTT
1 ACTTGTGGGCTT
868433 AAAAGGAAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 65 0.74
30 23 0.26
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (28 bp):
ACTTGTGGGCTTCTAAAGATTGCCACTG
Found at i:868461 original size:34 final size:35
Alignment explanation
Indices: 868423--868497 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
868413 TGCCACTAAC
** *
868423 TTGTGGGCTTA-AAAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAAAAAAAGAGTGCCACGGAG
*
868457 TTGTGAGCTTACAAAAAAAAAAGAGTGCCACGGAG
1 TTGTGGGCTTACAAAAAAAAAAGAGTGCCACGGAG
868492 TTGTGG
1 TTGTGG
868498 ACTTTGGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 10 0.29
35 25 0.71
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAAAAAAAGAGTGCCACGGAG
Found at i:868524 original size:29 final size:29
Alignment explanation
Indices: 868475--868646 Score: 195
Period size: 29 Copynumber: 5.9 Consensus size: 29
868465 TTACAAAAAA
* * *
868475 AAAAGAGTGCCACGGAGTTGTGGACTTTGG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTGG
* *
868505 AAAAGATGCCACCGACTTGTGGGCTTCGG
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* *
868534 AAAAGGGTGCCACTGATTTGTGGGCTTT-G
1 AAAA-GATGCCACTGACTTGTGGGCTTTGG
* * * *
868563 -AAGGTTGCCACTGACTTGTGGACTTTGA
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* *
868591 AAAAGATGCTACTGACTTGTGGGCTTTGA
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
868620 AAAAGATGCCACTGACTTGTGGGCTTT
1 AAAAGATGCCACTGACTTGTGGGCTTT
868647 TGAAGGGTGA
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
27 20 0.17
28 2 0.02
29 74 0.61
30 25 0.21
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
AAAAGATGCCACTGACTTGTGGGCTTTGG
Found at i:868616 original size:56 final size:57
Alignment explanation
Indices: 868327--868646 Score: 220
Period size: 56 Copynumber: 5.4 Consensus size: 57
868317 TTTTGAAGGT
868327 TGCCACTGACTTGTGGGCTTCT---AAAGATTGCCACTGACTTGTGGGCTTCT--AAAGA
1 TGCCACTGACTTGTGGGCTT-TGAAAAAGA-TGCCACTGACTTGTGGGCTT-TGAAAAGA
* * * *
868382 TTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAAAGGAAAAAGA
1 -TGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCACTGACTTGTGGGCTT----TG-AAAAGA
* * * * ** * * *
868446 GTGCTACGGAGTTGTGAGCTTACAAAAAAAAAAGAGTGCCACGGAGTTGTGGACTTTGGAAAAGA
1 -TGCCACTGACTTGTGGGCTT-----TGAAAAAGA-TGCCACTGACTTGTGGGCTTT-GAAAAGA
* * * * * * *
868511 TGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTT-TGAAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
* *
868568 TGCCACTGACTTGTGGACTTTGAAAAAGATGCTACTGACTTGTGGGCTTTGAAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTG-AAAAGA
868626 TGCCACTGACTTGTGGGCTTT
1 TGCCACTGACTTGTGGGCTTT
868647 TGAAGGGTGA
Statistics
Matches: 202, Mismatches: 43, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
56 45 0.22
57 23 0.11
58 43 0.21
59 21 0.10
60 5 0.02
63 2 0.01
64 35 0.17
65 6 0.03
66 1 0.00
68 5 0.02
69 16 0.08
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (57 bp):
TGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:868649 original size:86 final size:86
Alignment explanation
Indices: 868482--868652 Score: 245
Period size: 86 Copynumber: 2.0 Consensus size: 86
868472 AAAAAAAGAG
* * * *
868482 TGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCAC
1 TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAAGATGCCAC
*
868547 TGATTTGTGGGCTTTGAAGGT
66 TGACTTGTGGGCTTTGAAGGT
* * * *
868568 TGCCACTGACTTGTGGACTTTGAAAAAGATGCTACTGACTTGTGGGCTT-TGAAAAAGATGCCAC
1 TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAAGATGCCAC
868632 TGACTTGTGGGCTTTTGAAGG
66 TGACTTGTGGGC-TTTGAAGG
868653 GTGAGGAATG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
85 23 0.31
86 52 0.69
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (86 bp):
TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAAGATGCCAC
TGACTTGTGGGCTTTGAAGGT
Found at i:870085 original size:1 final size:1
Alignment explanation
Indices: 870081--870138 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
870071 CTTTTTGTTG
* * * * * * *
870081 TTTTTTTTTGTTTTTTTGTTTTGTTTTATTTTTTTTGTTGTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
870139 GCGGAGGATG
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (1 bp):
T
Found at i:870090 original size:13 final size:12
Alignment explanation
Indices: 870072--870138 Score: 89
Period size: 12 Copynumber: 5.2 Consensus size: 12
870062 ATCCAGACCC
870072 TTTTTGTTGTTTT
1 TTTTTGTT-TTTT
870085 TTTTTGTTTTTT
1 TTTTTGTTTTTT
870097 TGTTTTGTTTTATTT
1 T-TTTTG-TTT-TTT
*
870112 TTTTTGTTGTTT
1 TTTTTGTTTTTT
870124 TTTTTGTTTTTT
1 TTTTTGTTTTTT
870136 TTT
1 TTT
870139 GCGGAGGATG
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
12 22 0.45
13 15 0.31
14 8 0.16
15 4 0.08
ACGTcount: A:0.01, C:0.00, G:0.12, T:0.87
Consensus pattern (12 bp):
TTTTTGTTTTTT
Found at i:870094 original size:9 final size:9
Alignment explanation
Indices: 870072--870137 Score: 66
Period size: 9 Copynumber: 7.6 Consensus size: 9
870062 ATCCAGACCC
870072 TTTTTGTTGT
1 TTTTTGTT-T
870082 TTTTT-TTT
1 TTTTTGTTT
*
870090 GTTTT-TTT
1 TTTTTGTTT
*
870098 GTTTTGTTT
1 TTTTTGTTT
*
870107 TATTT-TTT
1 TTTTTGTTT
*
870115 TTGTTGTTT
1 TTTTTGTTT
870124 TTTTTGTTT
1 TTTTTGTTT
870133 TTTTT
1 TTTTT
870138 TGCGGAGGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
8 19 0.40
9 24 0.50
10 5 0.10
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:870102 original size:26 final size:24
Alignment explanation
Indices: 870072--870138 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 24
870062 ATCCAGACCC
*
870072 TTTTTGTTGTTTTTTTTTGTTTTTT
1 TTTTTGTT-TTTTTTTTTGTTGTTT
870097 TGTTTTGTTTTATTTTTTTTGTTGTTT
1 T-TTTTG-TTT-TTTTTTTTGTTGTTT
870124 TTTTTGTTTTTTTTT
1 TTTTTGTTTTTTTTT
870139 GCGGAGGATG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 6 0.16
25 4 0.11
26 11 0.29
27 17 0.45
ACGTcount: A:0.01, C:0.00, G:0.12, T:0.87
Consensus pattern (24 bp):
TTTTTGTTTTTTTTTTTGTTGTTT
Found at i:870126 original size:31 final size:29
Alignment explanation
Indices: 870081--870138 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 29
870071 CTTTTTGTTG
870081 TTTTTTTTTGTTTTTTTGTTTTGTTTTAT
1 TTTTTTTTTGTTTTTTTGTTTTGTTTTAT
*
870110 TTTTTTTGTTGTTTTTTTTGTTTTTTTTT
1 TTTTTTT-TTG-TTTTTTTGTTTTGTTTT
870139 GCGGAGGATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 7 0.27
30 3 0.12
31 16 0.62
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (29 bp):
TTTTTTTTTGTTTTTTTGTTTTGTTTTAT
Found at i:884142 original size:52 final size:52
Alignment explanation
Indices: 883993--884121 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
883983 CGAAATATGA
*
883993 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
884045 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
884097 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
884122 AAGATCACTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
Found at i:884205 original size:32 final size:32
Alignment explanation
Indices: 884164--884228 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
884154 TAGCTTAAAT
*
884164 TGTATCGATACAAAACTTATGTTTCGATACAA
1 TGTATCGATACAAAACTTATGTATCGATACAA
884196 TGTATCGATACAAAACTTATGTATCGATACAA
1 TGTATCGATACAAAACTTATGTATCGATACAA
884228 T
1 T
884229 AGTTTATGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAA
Found at i:884237 original size:20 final size:19
Alignment explanation
Indices: 884164--884248 Score: 92
Period size: 19 Copynumber: 4.7 Consensus size: 19
884154 TAGCTTAAAT
884164 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
884183 TGTTTCGATAC---A---A
1 TGTATCGATACAAAACTTA
884196 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
**
884215 TGTATCGATACAATAGTTTA
1 TGTATCGATACAA-AACTTA
884235 TGTATCGATACAAA
1 TGTATCGATACAAA
884249 TTGTTGAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
13 11 0.20
16 2 0.04
19 25 0.45
20 17 0.31
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:896412 original size:6 final size:6
Alignment explanation
Indices: 896401--896434 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
896391 AAGGGCATCC
896401 AAAATA AAAATA AAAA-A ATAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA A-AAATA AAAATA AAAA
896435 ATAGATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 2 0.08
6 22 0.85
7 2 0.08
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:897914 original size:66 final size:65
Alignment explanation
Indices: 897833--897988 Score: 159
Period size: 66 Copynumber: 2.4 Consensus size: 65
897823 TTTGGTTCTG
* * * * *
897833 CTGGTCACCCTTAATTGGTTCGTATAATTTTGTCCTAGCTAACTCTTTTTTGACTTAGGCTTTAC
1 CTGGTCA-CCTTAATTGGTTCGTATAATTTTGTCCCAGCCAACCCTTTATCGACTTAGGCTTTAC
897898 C
65 C
* * * ** * * *
897899 CTGGTCATCCATAATTAGTTCATATGGTTTTTTCCCAGCCAACCCTTTATCGACTTAGGTTTTGC
1 CTGGTCA-CCTTAATTGGTTCGTATAATTTTGTCCCAGCCAACCCTTTATCGACTTAGGCTTTAC
897964 C
65 C
* *
897965 TTGGTCACCTTAGTTGGTTCGTAT
1 CTGGTCACCTTAATTGGTTCGTAT
897989 GGTTTCGTCT
Statistics
Matches: 71, Mismatches: 19, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
65 13 0.18
66 58 0.82
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (65 bp):
CTGGTCACCTTAATTGGTTCGTATAATTTTGTCCCAGCCAACCCTTTATCGACTTAGGCTTTACC
Found at i:898008 original size:65 final size:64
Alignment explanation
Indices: 897879--898331 Score: 210
Period size: 65 Copynumber: 7.1 Consensus size: 64
897869 AGCTAACTCT
* * * * * * * ** * *
897879 TTTTTGACTTAGGCTTTACCCTGGTCATCCATAATTAGTTCATATGGTTTTTTCCCAGCCAACCC
1 TTTTCGACTTAGGTTTTACCTTGGTCA-CCTTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACCC
* *
897944 TTTATCGACTTAGGTTTTGCCTTGGTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGTCAACCC
1 TTT-TCGACTTAGGTTTTACCTTGGTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACCC
* * * * * * * * *
898009 ATTTTCAAATTAGGTTTCACCGTAGTCACCTTTAGTTGGTTTGTATGGTTTTGTTTTGGCCAACC
1 -TTTTCGACTTAGGTTTTACCTTGGTCACC-TTAGTTGGTTCGTATGGTTTCGTCTCGGCCAA-C
898074 CC
63 CC
* * * ** * *
898076 TTTTTGACTTCGGTTTTACCTTGATCACCAAAGTTGGTTCGTATGGTTTCATCT-TGCCTAA---
1 TTTTCGACTTAGGTTTTACCTTGGTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGCC-AACCC
* * * * * * * *
898137 ----CGACTCAGGTTTCACCTTGGTCACTTTTAATTGGTTTGTAGGGTTTCATC-CTAGCCAACC
1 TTTTCGACTTAGGTTTTACCTTGGTCAC-CTTAGTTGGTTCGTATGGTTTCGTCTC-GGCCAA-C
898197 CC
63 CC
** * * * * * * * *
898199 TTTTTAACTTAGGTTTTGCCTTGTTC-CTCCTAATTAGTTCATATGGTTTCTTC-CTGGCCAACT
1 TTTTCGACTTAGGTTTTACCTTGGTCAC-CTTAGTTGGTTCGTATGGTTTCGTCTC-GGCCAACC
898262 C
64 C
* * * * * * * *
898263 TTTTCTAACTCAGG-TTTGCCTTGGTCACTTTTAGTTGGTGCGTATAGTTTCGTCTTGGCTAACC
1 TTTTC-GACTTAGGTTTTACCTTGGTCAC-CTTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACC
898327 C
64 C
898328 TTTT
1 TTTT
898332 TCAACACAAG
Statistics
Matches: 289, Mismatches: 80, Indels: 38
0.71 0.20 0.09
Matches are distributed among these distances:
57 19 0.07
58 21 0.07
59 3 0.01
64 20 0.07
65 136 0.47
66 87 0.30
67 3 0.01
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (64 bp):
TTTTCGACTTAGGTTTTACCTTGGTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACCC
Found at i:898091 original size:66 final size:65
Alignment explanation
Indices: 897968--898125 Score: 165
Period size: 66 Copynumber: 2.4 Consensus size: 65
897958 TTTTGCCTTG
*
897968 GTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGTCAACCCATTTTCAAATTAGGTTTCACCGTA
1 GTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACCCATTTTCAAATTAGGTTTCACCGTA
* * * * * ** * * *
898033 GTCACCTTTAGTTGGTTTGTATGGTTTTGTTTTGGCCAACCCCTTTTTGACTTCGGTTTTACC-T
1 GTCACC-TTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACCCATTTTCAAATTAGGTTTCACCGT
*
898097 T
65 A
**
898098 GATCACCAAAGTTGGTTCGTATGGTTTC
1 G-TCACCTTAGTTGGTTCGTATGGTTTC
898126 ATCTTGCCTA
Statistics
Matches: 75, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
65 25 0.33
66 50 0.67
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (65 bp):
GTCACCTTAGTTGGTTCGTATGGTTTCGTCTCGGCCAACCCATTTTCAAATTAGGTTTCACCGTA
Found at i:898244 original size:123 final size:123
Alignment explanation
Indices: 898020--898248 Score: 280
Period size: 123 Copynumber: 1.9 Consensus size: 123
898010 TTTTCAAATT
* * ** ** * *
898020 AGGTTTCACCGTAGTCACCTTTAGTTGGTTTGTATGGTTTTGTTTTGGCCAACCCCTTTTTGACT
1 AGGTTTCACCGTAGTCACCTTTAATTGGTTTGTAGGGTTTCATCCTAGCCAACCCCTTTTTAACT
* * *
898085 TCGGTTTTACCTTGATCACCAAAGTTGGTTCGTATGGTTTCATCTTGCCTAACGACTC
66 TAGGTTTTACCTTGATCACCAAAGTTAGTTCATATGGTTTCATCTTGCCTAACGACTC
* * *
898143 AGGTTTCACCTTGGTCACTTTTAATTGGTTTGTAGGGTTTCATCCTAGCCAACCCCTTTTTAACT
1 AGGTTTCACCGTAGTCACCTTTAATTGGTTTGTAGGGTTTCATCCTAGCCAACCCCTTTTTAACT
* * * *
898208 TAGGTTTTGCCTTGTTCCTCCTAA-TTAGTTCATATGGTTTC
66 TAGGTTTTACCTTGAT-CACCAAAGTTAGTTCATATGGTTTC
898249 TTCCTGGCCA
Statistics
Matches: 87, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
123 82 0.94
124 5 0.06
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.43
Consensus pattern (123 bp):
AGGTTTCACCGTAGTCACCTTTAATTGGTTTGTAGGGTTTCATCCTAGCCAACCCCTTTTTAACT
TAGGTTTTACCTTGATCACCAAAGTTAGTTCATATGGTTTCATCTTGCCTAACGACTC
Found at i:899286 original size:2 final size:2
Alignment explanation
Indices: 899279--899305 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
899269 TTTTGAATTG
899279 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
899306 CAATTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:901281 original size:44 final size:45
Alignment explanation
Indices: 901218--901307 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 45
901208 TAGTTTCATC
901218 ATTTTAGACTGTTCGCAAGTCCTTTAG-GTTACTAAGATACTTTT
1 ATTTTAGACTGTTCGCAAGTCCTTTAGAGTTACTAAGATACTTTT
* ** * *
901262 ATTTTAGATTGTTTTCAAGTCTTTTAGAGTTAGTAAGATACTTTT
1 ATTTTAGACTGTTCGCAAGTCCTTTAGAGTTACTAAGATACTTTT
901307 A
1 A
901308 AGTTAAAGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 23 0.57
45 17 0.43
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.47
Consensus pattern (45 bp):
ATTTTAGACTGTTCGCAAGTCCTTTAGAGTTACTAAGATACTTTT
Found at i:903362 original size:32 final size:30
Alignment explanation
Indices: 903326--903384 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
903316 GTTTAGGAAA
* *
903326 AAATAATAAATATATTCTTTTATATTTACATC
1 AAATAATAAA-ACATTCTTTGAT-TTTACATC
903358 AAATAATAAAACATTCTTTGATTTTAC
1 AAATAATAAAACATTCTTTGATTTTAC
903385 GAATCCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 10 0.40
32 10 0.40
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (30 bp):
AAATAATAAAACATTCTTTGATTTTACATC
Found at i:903678 original size:3 final size:3
Alignment explanation
Indices: 903670--903713 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
903660 CCGAAGTAAT
903670 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
903714 GTTTCGCGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:904676 original size:43 final size:43
Alignment explanation
Indices: 904581--904678 Score: 160
Period size: 43 Copynumber: 2.3 Consensus size: 43
904571 TACAATTCAT
*
904581 AATGTATCGATACAATGCATTTGAAATTATAGCCGTTGGGCTT
1 AATGTATCGATACAATGCATTTGAAATTATAGCCGTTGGGCTC
* *
904624 AATATATCGATACAATGCATTTGAAATTATAGTCGTTGGGCTC
1 AATGTATCGATACAATGCATTTGAAATTATAGCCGTTGGGCTC
*
904667 AATGCATCGATA
1 AATGTATCGATA
904679 TAATTTACCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (43 bp):
AATGTATCGATACAATGCATTTGAAATTATAGCCGTTGGGCTC
Found at i:904820 original size:33 final size:32
Alignment explanation
Indices: 904762--904826 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
904752 ACATTTTATG
*
904762 ATGTATCGATACAAAGAACATGTATCGATACA
1 ATGTATCAATACAAAGAACATGTATCGATACA
* *
904794 ATGTATCAATACTAAGCAATATGTATCGATACA
1 ATGTATCAATACAAAG-AACATGTATCGATACA
904827 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (32 bp):
ATGTATCAATACAAAGAACATGTATCGATACA
Found at i:905548 original size:80 final size:80
Alignment explanation
Indices: 905415--905574 Score: 293
Period size: 80 Copynumber: 2.0 Consensus size: 80
905405 TTGTTCTAAT
*
905415 TTTCCCTTTAAAAACAATCTCCCCCTAATTGTTTTCAATTTAATACTAATTTTATGAAAATAATC
1 TTTCCCTTTAAAAACAATCTCCCCCTAATTGTTTTCAATTTAATACCAATTTTATGAAAATAATC
905480 TCCACCTTAATAAAA
66 TCCACCTTAATAAAA
*
905495 TTTCCCTTTAAAAACAATTTCCCCCTAATTGTTTTCAATTTAATACCAATTTTATGAAAATAATC
1 TTTCCCTTTAAAAACAATCTCCCCCTAATTGTTTTCAATTTAATACCAATTTTATGAAAATAATC
*
905560 TCCCCCTTAATAAAA
66 TCCACCTTAATAAAA
905575 GTTTTTACCC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.37, C:0.22, G:0.03, T:0.39
Consensus pattern (80 bp):
TTTCCCTTTAAAAACAATCTCCCCCTAATTGTTTTCAATTTAATACCAATTTTATGAAAATAATC
TCCACCTTAATAAAA
Found at i:913577 original size:63 final size:63
Alignment explanation
Indices: 913473--913633 Score: 243
Period size: 63 Copynumber: 2.6 Consensus size: 63
913463 ACACGCTCTT
* ** *
913473 ATGTGTCGATACAATTCATAATGTATCGATACAATGCATTTGAAATT-CTAGCCGTTGGGCTCA
1 ATGTATCGATACAATTCACCATGTATCGATACAATGCATTTGAAATTAC-AGCCGTTAGGCTCA
*
913536 ATGTATCGATACAATTCACCATGTATCGATATAATGCATTTGAAATTACAGCCGTTAGGCTCA
1 ATGTATCGATACAATTCACCATGTATCGATACAATGCATTTGAAATTACAGCCGTTAGGCTCA
* *
913599 ATGTATCGATACAATTTACCATGTATCGACACAAT
1 ATGTATCGATACAATTCACCATGTATCGATACAAT
913634 TCAATTATGA
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
63 88 0.99
64 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (63 bp):
ATGTATCGATACAATTCACCATGTATCGATACAATGCATTTGAAATTACAGCCGTTAGGCTCA
Found at i:913735 original size:32 final size:33
Alignment explanation
Indices: 913694--913755 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
913684 CATTTTATGG
*
913694 TGTATCGATACAAAG-AACATGTATCGATATAA
1 TGTATCGATACAAAGCAACAAGTATCGATATAA
* *
913726 TGTATCGATACTAAGCAATAAGTATCGATA
1 TGTATCGATACAAAGCAACAAGTATCGATA
913756 CATCTGGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACAAGTATCGATATAA
Found at i:917632 original size:17 final size:17
Alignment explanation
Indices: 917593--917641 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
917583 TGTCAAGAAG
917593 AAAGAAAAGAGAAAGAAAA
1 AAAGAAAA-A-AAAGAAAA
* *
917612 AAAGAAAAAAAAGGAAT
1 AAAGAAAAAAAAGAAAA
917629 AAAGAAAGAAAAA
1 AAAGAAA-AAAAA
917642 AAATCAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 13 0.48
18 6 0.22
19 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (17 bp):
AAAGAAAAAAAAGAAAA
Done.