Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4121247
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 5938 characters in sequence are not A, C, G, or T
File 10 of 25
Found at i:1504563 original size:14 final size:14
Alignment explanation
Indices: 1504544--1504598 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
1504534 GAAAAAAAGC
1504544 ATGCATGAAATGTA
1 ATGCATGAAATGTA
1504558 ATGCATGAAATGTA
1 ATGCATGAAATGTA
* * *
1504572 CATTACGTGAAATG-C
1 -A-TGCATGAAATGTA
1504587 ATGCATGAAATG
1 ATGCATGAAATG
1504599 AACTCATGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
13 9 0.26
14 15 0.44
15 1 0.03
16 9 0.26
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (14 bp):
ATGCATGAAATGTA
Found at i:1504599 original size:84 final size:84
Alignment explanation
Indices: 1504460--1504638 Score: 290
Period size: 84 Copynumber: 2.1 Consensus size: 84
1504450 TTCATTATGA
1504460 ATGCATGAAA-GCAATGTAATGAAATGAACATTACGTGAAATGCATGCATGAAATGAACTCATGG
1 ATGCATGAAATGCAATGTAATGAAATGAACATTACGTGAAATGCATGCATGAAATGAACTCAT-G
*
1504524 CGTGAAACATGAAAAAAAGC
65 AGTGAAACATGAAAAAAAGC
* * *
1504544 ATGCATGAAATGTAATG-CATGAAATGTACATTACGTGAAATGCATGCATGAAATGAACTCATGA
1 ATGCATGAAATGCAATGTAATGAAATGAACATTACGTGAAATGCATGCATGAAATGAACTCATGA
*
1504608 GTGAAACATGAAAGAAAGC
66 GTGAAACATGAAAAAAAGC
1504627 ATGCATGAAATG
1 ATGCATGAAATG
1504639 AAAGTATGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
83 31 0.35
84 53 0.60
85 5 0.06
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (84 bp):
ATGCATGAAATGCAATGTAATGAAATGAACATTACGTGAAATGCATGCATGAAATGAACTCATGA
GTGAAACATGAAAAAAAGC
Found at i:1504647 original size:17 final size:17
Alignment explanation
Indices: 1504614--1504663 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
1504604 ATGAGTGAAA
1504614 CATGAAA-GAAAGCATG
1 CATGAAATGAAAGCATG
*
1504630 CATGAAATGAAAGTATG
1 CATGAAATGAAAGCATG
*
1504647 CATGAAGTGAAAGCATG
1 CATGAAATGAAAGCATG
1504664 TAATGACACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 7 0.23
17 23 0.77
ACGTcount: A:0.46, C:0.10, G:0.26, T:0.18
Consensus pattern (17 bp):
CATGAAATGAAAGCATG
Found at i:1504886 original size:23 final size:23
Alignment explanation
Indices: 1504841--1504887 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
1504831 TTTTTTCTTA
* *
1504841 AATTAATTAATTTTAATTTTTTT
1 AATTAATTAATTTTAACTATTTT
1504864 AATTAATTAATTGTT-ACTATTTT
1 AATTAATTAATT-TTAACTATTTT
1504887 A
1 A
1504888 TTATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
AATTAATTAATTTTAACTATTTT
Found at i:1504899 original size:22 final size:21
Alignment explanation
Indices: 1504874--1504915 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1504864 AATTAATTAA
1504874 TTGTTACTATTTTATTATATTT
1 TTGTTACTATTTTA-TATATTT
* *
1504896 TTGTTATTTTTTTATATATT
1 TTGTTACTATTTTATATATT
1504916 ATTCATGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.71
Consensus pattern (21 bp):
TTGTTACTATTTTATATATTT
Found at i:1506076 original size:21 final size:21
Alignment explanation
Indices: 1506050--1506097 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
1506040 TCTGTTTTAG
*
1506050 ATGTGTGATTTGGTAAAAGCA
1 ATGTGTGATTTGGCAAAAGCA
1506071 ATGTGTGATTTGGCAAAAGCA
1 ATGTGTGATTTGGCAAAAGCA
1506092 ATGTGT
1 ATGTGT
1506098 TCACAAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.33
Consensus pattern (21 bp):
ATGTGTGATTTGGCAAAAGCA
Found at i:1512561 original size:18 final size:19
Alignment explanation
Indices: 1512538--1512576 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
1512528 TTTAAAAATT
1512538 TAAAATAC-G-AATATAAAA
1 TAAAATACAGTAATA-AAAA
1512556 TAAAATACAGTAATAAAAA
1 TAAAATACAGTAATAAAAA
1512575 TA
1 TA
1512577 TTTTTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 7 0.37
20 4 0.21
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (19 bp):
TAAAATACAGTAATAAAAA
Found at i:1513881 original size:6 final size:6
Alignment explanation
Indices: 1513872--1513906 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
1513862 TTTAAAGCAT
*
1513872 TTATAT TTATAA TTATAA TTATAA TTATAA TTATA
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATA
1513907 TTCTCATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:1514172 original size:18 final size:18
Alignment explanation
Indices: 1514151--1514190 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1514141 CCACCACCTT
*
1514151 CTCCTCCTCCACCGCCAC
1 CTCCTCCACCACCGCCAC
* *
1514169 CTCCTCCACCTCTGCCAC
1 CTCCTCCACCACCGCCAC
1514187 CTCC
1 CTCC
1514191 GCTTCCATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.65, G:0.05, T:0.20
Consensus pattern (18 bp):
CTCCTCCACCACCGCCAC
Found at i:1514266 original size:21 final size:22
Alignment explanation
Indices: 1514231--1514292 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
1514221 ATAGCCTGAC
**
1514231 CCACCACCATTGCCTCCACCT-
1 CCACCACCACCGCCTCCACCTA
*
1514252 CCACCACCACCGCCTCC-TCTA
1 CCACCACCACCGCCTCCACCTA
*
1514273 CCACCGCCACCGCCTCCACC
1 CCACCACCACCGCCTCCACC
1514293 ACCTCCTATC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 2 0.06
21 31 0.91
22 1 0.03
ACGTcount: A:0.18, C:0.63, G:0.06, T:0.13
Consensus pattern (22 bp):
CCACCACCACCGCCTCCACCTA
Found at i:1514270 original size:18 final size:18
Alignment explanation
Indices: 1514249--1514295 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
1514239 ATTGCCTCCA
* *
1514249 CCTCCACCACCACCGCCT
1 CCTCCACCACCACCACCG
* *
1514267 CCTCTACCACCGCCACCG
1 CCTCCACCACCACCACCG
1514285 CCTCCACCACC
1 CCTCCACCACC
1514296 TCCTATCCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.17, C:0.66, G:0.06, T:0.11
Consensus pattern (18 bp):
CCTCCACCACCACCACCG
Found at i:1516374 original size:2 final size:2
Alignment explanation
Indices: 1516367--1516409 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1516357 TGTTAGTGAG
1516367 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1516409 A
1 A
1516410 AAGTTCGAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1516966 original size:16 final size:17
Alignment explanation
Indices: 1516926--1516968 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
1516916 TTATTAACTT
1516926 ATTAT-TTTTTAAATAA
1 ATTATATTTTTAAATAA
* *
1516942 AATAAATTTTTAAA-AA
1 ATTATATTTTTAAATAA
1516958 ATTATATTTTT
1 ATTATATTTTT
1516969 TTCACCCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTATATTTTTAAATAA
Found at i:1517270 original size:24 final size:24
Alignment explanation
Indices: 1517233--1517295 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
1517223 AACTATCAGC
1517233 TTTTAAA-A-ATATTTACTTAA-TT
1 TTTTAAATATATATTTA-TTAATTT
* *
1517255 TTTTACATATTTATTTATTAATTT
1 TTTTAAATATATATTTATTAATTT
1517279 TTTTAAATATATATTTA
1 TTTTAAATATATATTTA
1517296 AAAATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 6 0.18
23 5 0.15
24 23 0.68
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTAAATATATATTTATTAATTT
Found at i:1521192 original size:30 final size:30
Alignment explanation
Indices: 1521156--1521212 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
1521146 CTCATTACAA
1521156 TTGATAGCATTTAAAATGATACCAACACGG
1 TTGATAGCATTTAAAATGATACCAACACGG
1521186 TTGATAGCATTTAAAATGATACCAACA
1 TTGATAGCATTTAAAATGATACCAACA
1521213 TGAATCAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (30 bp):
TTGATAGCATTTAAAATGATACCAACACGG
Found at i:1522671 original size:3 final size:3
Alignment explanation
Indices: 1522663--1522697 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
1522653 GTGTGACGCA
1522663 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1522698 GTTTCAAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1522874 original size:6 final size:6
Alignment explanation
Indices: 1522863--1522897 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
1522853 TTTAAAGCAT
1522863 TTATAA TTATAA TTATAA TTATAA TTATAA TTATA
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATA
1522898 TTCTCATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
TTATAA
Found at i:1523163 original size:21 final size:21
Alignment explanation
Indices: 1523139--1523179 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1523129 ATTGCCACCA
*
1523139 CCTCCGCCACCACCTTCTCCT
1 CCTCCGCCACCACCTCCTCCT
*
1523160 CCTCCGCCGCCACCTCCTCC
1 CCTCCGCCACCACCTCCTCC
1523180 ACCTTTACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.66, G:0.07, T:0.20
Consensus pattern (21 bp):
CCTCCGCCACCACCTCCTCCT
Found at i:1523376 original size:24 final size:23
Alignment explanation
Indices: 1523318--1523381 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
1523308 CACCTCCTAT
* *
1523318 CCCACTACCTGATCCATATCCTGA
1 CCCACT-CCAGATCCATATCCAGA
1523342 CCCGGA-TCCAGATCCATATCCAGA
1 CCC--ACTCCAGATCCATATCCAGA
1523366 CCCACTGCCAGATCCA
1 CCCACT-CCAGATCCA
1523382 GAGGCAGCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 1 0.03
23 1 0.03
24 30 0.88
25 1 0.03
26 1 0.03
ACGTcount: A:0.27, C:0.42, G:0.12, T:0.19
Consensus pattern (23 bp):
CCCACTCCAGATCCATATCCAGA
Found at i:1523421 original size:21 final size:21
Alignment explanation
Indices: 1523389--1523440 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
1523379 CCAGAGGCAG
*
1523389 CACCTCCC-CCACCTCCGCCTC
1 CACC-CCCTCCACCGCCGCCTC
1523410 CACCCCCTCCACCGCCGCCTC
1 CACCCCCTCCACCGCCGCCTC
*
1523431 CACCTCCTCC
1 CACCCCCTCC
1523441 GCTACCATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.10, C:0.71, G:0.06, T:0.13
Consensus pattern (21 bp):
CACCCCCTCCACCGCCGCCTC
Found at i:1523508 original size:12 final size:12
Alignment explanation
Indices: 1523457--1523509 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
1523447 ATAAGCTCCT
*
1523457 GAACCATATCCG
1 GAACCATATCCA
* **
1523469 GAGCCACCTCCA
1 GAACCATATCCA
* *
1523481 GAACCATACCCT
1 GAACCATATCCA
1523493 GAACCATATCCA
1 GAACCATATCCA
1523505 GAACC
1 GAACC
1523510 TGACCCCAAG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.34, C:0.40, G:0.13, T:0.13
Consensus pattern (12 bp):
GAACCATATCCA
Found at i:1524850 original size:31 final size:28
Alignment explanation
Indices: 1524814--1524912 Score: 85
Period size: 30 Copynumber: 3.4 Consensus size: 28
1524804 TAATTATATT
*
1524814 TTAAATTATTAAATTTAATATTAATTTTTA
1 TTAAATTATTAAATTTAA-ATTAA-TTTAA
*
1524844 TATAAATTA-TAAATTATAAATTTATTTAA
1 T-TAAATTATTAAATT-TAAATTAATTTAA
* *
1524873 TTATATTATTAAATTTTTATTATTAA-TTAA
1 TTAAATTATTAAA--TTTA-AATTAATTTAA
1524903 TTAAATTATT
1 TTAAATTATT
1524913 TATATTTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
28 6 0.11
29 9 0.16
30 26 0.46
31 16 0.28
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
TTAAATTATTAAATTTAAATTAATTTAA
Found at i:1524905 original size:22 final size:23
Alignment explanation
Indices: 1524856--1524928 Score: 72
Period size: 22 Copynumber: 3.4 Consensus size: 23
1524846 TAAATTATAA
1524856 ATTA-TAAATTTATTTA--ATTAT
1 ATTATTAAA-TTATTTATTATTAT
1524877 ATTATTAAATT-TTTATTATTA-
1 ATTATTAAATTATTTATTATTAT
1524898 ATTAATTAAATTATTTA-TATT-T
1 ATT-ATTAAATTATTTATTATTAT
1524920 ATT-TTAAAT
1 ATTATTAAAT
1524929 CATAATTCGA
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
20 10 0.22
21 9 0.20
22 23 0.50
23 4 0.09
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
ATTATTAAATTATTTATTATTAT
Found at i:1525029 original size:23 final size:21
Alignment explanation
Indices: 1524988--1525041 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 21
1524978 TATTATTTTT
*
1524988 ATAATTATAATAAAAATAA-C
1 ATAATTATAAAAAAAATAACC
1525008 ATAATTATAAAAATATACATAACC
1 ATAATTATAAAAA-A-A-ATAACC
1525032 ATAATT-TAAA
1 ATAATTATAAA
1525042 TCTCTAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 12 0.41
21 1 0.03
22 1 0.03
23 8 0.28
24 7 0.24
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAATTATAAAAAAAATAACC
Found at i:1525035 original size:18 final size:17
Alignment explanation
Indices: 1524997--1525035 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
1524987 TATAATTATA
**
1524997 ATAAAAATAACATAATT
1 ATAAAAATAACATAACC
1525014 ATAAAAATATACATAACC
1 ATAAAAATA-ACATAACC
1525032 ATAA
1 ATAA
1525036 TTTAAATCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAAAATAACATAACC
Found at i:1526842 original size:22 final size:21
Alignment explanation
Indices: 1526814--1526875 Score: 61
Period size: 24 Copynumber: 2.7 Consensus size: 21
1526804 ATATATAATT
1526814 AAATAATACTAATATAACATAA
1 AAATAATA-TAATATAACATAA
* *
1526836 AAATAATTAAAATATATAATATAA
1 AAATAA-T-ATA-ATATAACATAA
1526860 AAATAATATAAATATA
1 AAATAATAT-AATATA
1526876 TAAATATATC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 12 0.36
23 4 0.12
24 17 0.52
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATAATATAATATAACATAA
Found at i:1526852 original size:24 final size:24
Alignment explanation
Indices: 1526825--1526878 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
1526815 AATAATACTA
1526825 ATATAACATAAAAATAAT-TAAAAT
1 ATATAACATAAAAATAATAT-AAAT
*
1526849 ATATAATATAAAAATAATATAAAT
1 ATATAACATAAAAATAATATAAAT
1526873 ATATAA
1 ATATAA
1526879 ATATATCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 27 0.96
25 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
ATATAACATAAAAATAATATAAAT
Found at i:1526879 original size:43 final size:42
Alignment explanation
Indices: 1526801--1526896 Score: 99
Period size: 43 Copynumber: 2.3 Consensus size: 42
1526791 ATAATTTTAA
*
1526801 AAAATATATAATTAAATAATACTAATATAACATAAAAATAATT
1 AAAATATATAATTAAATAATACTAATATAACATAAAAAT-ATC
* *
1526844 AAAATATATAATATAAAAATAATA-TAA-AT-ATATAAATATATC
1 AAAATATATAAT-T--AAATAATACTAATATAACATAAAAATATC
*
1526886 AAAATTTATAA
1 AAAATATATAA
1526897 CATTTTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
42 12 0.26
43 20 0.43
44 3 0.07
45 3 0.07
46 8 0.17
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (42 bp):
AAAATATATAATTAAATAATACTAATATAACATAAAAATATC
Found at i:1526890 original size:10 final size:8
Alignment explanation
Indices: 1526845--1526884 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
1526835 AAAATAATTA
1526845 AAATATAT
1 AAATATAT
*
1526853 -AATATAA
1 AAATATAT
1526860 AAATAATAT
1 AAAT-ATAT
1526869 AAATATAT
1 AAATATAT
1526877 AAATATAT
1 AAATATAT
1526885 CAAAATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.21
8 15 0.54
9 7 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AAATATAT
Found at i:1527390 original size:19 final size:20
Alignment explanation
Indices: 1527368--1527413 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
1527358 ATGTACTTTA
1527368 AAAATAATTAATAAT-A-TAT
1 AAAATAATT-ATAATCATTAT
1527387 AAAATAATTATAATCATTAT
1 AAAATAATTATAATCATTAT
1527407 AAAATAA
1 AAAATAA
1527414 AATTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.20
19 10 0.40
20 10 0.40
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAATAATTATAATCATTAT
Found at i:1528327 original size:77 final size:77
Alignment explanation
Indices: 1528240--1528388 Score: 262
Period size: 77 Copynumber: 1.9 Consensus size: 77
1528230 TATTCAAAAA
* *
1528240 AATCTCTATTGACATTTTATACCACAAGGTGTCAAATTGTCAAATTTATTAATTAATTTTGAATT
1 AATCTATATTGACATTTTATACCACAAGGTATCAAATTGTCAAATTTATTAATTAATTTTGAATT
1528305 TTTCATTTTACT
66 TTTCATTTTACT
* *
1528317 AATCTATATTGACATTTTATACTACGAGGTATCAAATTGTCAAATTTATTAATTAATTTTGAATT
1 AATCTATATTGACATTTTATACCACAAGGTATCAAATTGTCAAATTTATTAATTAATTTTGAATT
1528382 TTTCATT
66 TTTCATT
1528389 GTACCATGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 68 1.00
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (77 bp):
AATCTATATTGACATTTTATACCACAAGGTATCAAATTGTCAAATTTATTAATTAATTTTGAATT
TTTCATTTTACT
Found at i:1529607 original size:19 final size:20
Alignment explanation
Indices: 1529568--1529605 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1529558 TGTTGTTCGT
1529568 TGATATGATGTTAATTTTTG
1 TGATATGATGTTAATTTTTG
1529588 TGATATGAT-TTCAATTTT
1 TGATATGATGTT-AATTTT
1529606 GTCATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (20 bp):
TGATATGATGTTAATTTTTG
Found at i:1529612 original size:19 final size:20
Alignment explanation
Indices: 1529570--1529612 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
1529560 TTGTTCGTTG
*
1529570 ATATGATGTTAATTTTTGTG
1 ATATGATGTTAATTTTTGTC
1529590 ATATGAT-TTCAA-TTTTGTC
1 ATATGATGTT-AATTTTTGTC
1529609 ATAT
1 ATAT
1529613 ATAAATATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.28, C:0.05, G:0.14, T:0.53
Consensus pattern (20 bp):
ATATGATGTTAATTTTTGTC
Found at i:1530454 original size:31 final size:32
Alignment explanation
Indices: 1530419--1530499 Score: 119
Period size: 32 Copynumber: 2.6 Consensus size: 32
1530409 TACATTTTTC
1530419 ATTGTATTGATACATTCTGGG-TTTTGACCTA
1 ATTGTATTGATACATTCTGGGTTTTTGACCTA
* *
1530450 ATTGTATCGATACATTCTGGGTTTTTTACCTA
1 ATTGTATTGATACATTCTGGGTTTTTGACCTA
* *
1530482 AATATATTGATACATTCT
1 ATTGTATTGATACATTCT
1530500 TCAATGTATC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 20 0.45
32 24 0.55
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.46
Consensus pattern (32 bp):
ATTGTATTGATACATTCTGGGTTTTTGACCTA
Found at i:1540044 original size:16 final size:16
Alignment explanation
Indices: 1540018--1540059 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
1540008 CTCGAATATT
1540018 AAACTAAAATGA-TCA
1 AAACTAAAATGACTCA
1540033 AAACTCAAAATGACTCA
1 AAACT-AAAATGACTCA
*
1540050 AATCTAAAAT
1 AAACTAAAAT
1540060 AACATAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 12 0.50
17 7 0.29
ACGTcount: A:0.57, C:0.17, G:0.05, T:0.21
Consensus pattern (16 bp):
AAACTAAAATGACTCA
Found at i:1541932 original size:13 final size:12
Alignment explanation
Indices: 1541902--1541930 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
1541892 AATGCCTGCC
1541902 AAAAAGAAAAAA
1 AAAAAGAAAAAA
1541914 AAAAAGAAAAAA
1 AAAAAGAAAAAA
1541926 AAAAA
1 AAAAA
1541931 AGGAAGGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAA
Found at i:1552501 original size:2 final size:2
Alignment explanation
Indices: 1552494--1552521 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1552484 AAAATGTGAA
1552494 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1552522 CAAAGATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1552742 original size:16 final size:15
Alignment explanation
Indices: 1552723--1552770 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
1552713 AAATAATTTA
1552723 ATATTAAATAAATATT
1 ATATT-AATAAATATT
1552739 ATATTTAATAAATAATT
1 ATA-TTAATAAAT-ATT
*
1552756 A-ATTAATATATATT
1 ATATTAATAAATATT
1552770 A
1 A
1552771 ATTTAGTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
14 4 0.14
15 8 0.28
16 11 0.38
17 6 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATATTAATAAATATT
Found at i:1552885 original size:21 final size:21
Alignment explanation
Indices: 1552859--1552929 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 21
1552849 AAACTGTTAA
*
1552859 AATAATAAAATTAATTATTAT
1 AATAATAAAATTAAATATTAT
1552880 AATAATAAAATTAAATATTATT
1 AATAATAAAATTAAATATTA-T
* *
1552902 AAAAATATTAAATAAAAATATTAT
1 AATAATA--AAAT-TAAATATTAT
1552926 AATA
1 AATA
1552930 TATGTAATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 19 0.45
22 7 0.17
24 8 0.19
25 8 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AATAATAAAATTAAATATTAT
Found at i:1552919 original size:13 final size:13
Alignment explanation
Indices: 1552892--1552929 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
1552882 TAATAAAATT
*
1552892 AAATATT-ATTAA
1 AAATATTAAATAA
1552904 AAATATTAAATAA
1 AAATATTAAATAA
1552917 AAATATTATAATA
1 AAATATTA-AATA
1552930 TATGTAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 7 0.30
13 12 0.52
14 4 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATATTAAATAA
Found at i:1552968 original size:24 final size:24
Alignment explanation
Indices: 1552906--1553056 Score: 78
Period size: 23 Copynumber: 6.6 Consensus size: 24
1552896 ATTATTAAAA
*
1552906 ATATTAAATAA-AAATATTATA-AT
1 ATATTAAATAATAAA-ATTATATTT
* *
1552929 ATATGTAATTATTAAAATTATATTT
1 ATAT-TAAATAATAAAATTATATTT
*
1552954 ATATTAACTAATAAAA-TATATATT
1 ATATTAAATAATAAAATTATAT-TT
*
1552978 ATAGTT---T-AT--ATTTAT-TTT
1 ATA-TTAAATAATAAAATTATATTT
* *
1552996 A-AAT-AATAATTAAATTTTATATTT
1 ATATTAAATAA-TAAA-ATTATATTT
*
1553020 ATATTAAAAAAT-AAATTATATTT
1 ATATTAAATAATAAAATTATATTT
1553043 ATATTAAA-AATAAA
1 ATATTAAATAATAAA
1553057 TCTTTAAAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 34
0.70 0.07 0.23
Matches are distributed among these distances:
16 1 0.01
17 1 0.01
18 4 0.04
19 3 0.03
20 4 0.04
21 2 0.02
22 5 0.05
23 32 0.32
24 32 0.32
25 13 0.13
26 4 0.04
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (24 bp):
ATATTAAATAATAAAATTATATTT
Found at i:1553042 original size:23 final size:22
Alignment explanation
Indices: 1553012--1553057 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 22
1553002 TAATTAAATT
1553012 TTATATTTATATTAAAAAATAAA
1 TTATATTTATATT-AAAAATAAA
1553035 TTATATTTATATTAAAAATAAA
1 TTATATTTATATTAAAAATAAA
1553057 T
1 T
1553058 CTTTAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TTATATTTATATTAAAAATAAA
Found at i:1553056 original size:29 final size:30
Alignment explanation
Indices: 1552943--1553056 Score: 99
Period size: 29 Copynumber: 3.9 Consensus size: 30
1552933 GTAATTATTA
*
1552943 AAATTATA-TTTATATTAACTAATAAAATAT
1 AAATTATAGTTTATATTAA-TAATAAAAAAT
* * ** *
1552973 ATATTATAGTTTATATTTATTTTAAATAAT
1 AAATTATAGTTTATATTAATAATAAAAAAT
* * * *
1553003 -AATTAAATTTTATATTTATATTAAAAAAT
1 AAATTATAGTTTATATTAATAATAAAAAAT
*
1553032 AAATTATA-TTTATATTAAAAATAAA
1 AAATTATAGTTTATATTAATAATAAA
1553057 TCTTTAAAAA
Statistics
Matches: 67, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
29 38 0.57
30 20 0.30
31 9 0.13
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
AAATTATAGTTTATATTAATAATAAAAAAT
Found at i:1553412 original size:18 final size:19
Alignment explanation
Indices: 1553362--1553414 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
1553352 TTTTTATCTA
1553362 TTAAATTAATTTTATATTTAT
1 TTAAA-TAATTTTA-ATTTAT
1553383 TTAAATAATTTTAATTT-T
1 TTAAATAATTTTAATTTAT
* *
1553401 TTATATAGTTTTAA
1 TTAAATAATTTTAA
1553415 ATGAAACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 13 0.43
19 4 0.13
20 8 0.27
21 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TTAAATAATTTTAATTTAT
Found at i:1556767 original size:78 final size:78
Alignment explanation
Indices: 1556503--1556784 Score: 343
Period size: 79 Copynumber: 3.6 Consensus size: 78
1556493 GAGATAATAA
* * * * * *
1556503 CGGGGTTGGAATATCCCCTTGAAAATAACGGGGTTTGAGTATCCCCGGTTGTGAAAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTAT-AAAAATTGATGA
* *
1556568 TTTGGAAATAAAAT
65 TTTAGAAATAAAAC
* * * * * *
1556582 CGGGATTGGAGCATCCCCTCGGAAATAACGGGGTTGAAGTATCCCCGACTATAAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTAT-AAAAATTGATGA
1556647 TTTAGAAATAAAAC
65 TTTAGAAATAAAAC
* * *
1556661 CGAGGTTGGAGTATCCCCTC-AGAAATAACGAGGTTGGAGTATCCCCGATTATAAGAAATTAAT-
1 CGGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGTATCCCCGATTATAA-AAATTGATG
*
1556724 ATTTAGAAATAAAGC
64 ATTTAGAAATAAAAC
*
1556739 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
1556785 TCAAAAATAA
Statistics
Matches: 172, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
78 56 0.33
79 116 0.67
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATAAAAATTGATGAT
TTAGAAATAAAAC
Found at i:1556773 original size:28 final size:28
Alignment explanation
Indices: 1556739--1556812 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
1556729 GAAATAAAGC
* *
1556739 CGGGGTTGGGGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCTCAAAAATAA
1556767 CGGGGTTGGAGTATCCCCTCAAAAATAA
1 CGGGGTTGGAGTATCCCCTCAAAAATAA
*
1556795 TGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
1556813 GATGAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCAAAAATAA
Found at i:1556881 original size:103 final size:106
Alignment explanation
Indices: 1556664--1556887 Score: 301
Period size: 103 Copynumber: 2.1 Consensus size: 106
1556654 ATAAAACCGA
* *
1556664 GGTTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCGATTATAAGAAATTAATATTTA
1 GGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATTAGAAGAAATTAATATTTA
* * * * *
1556729 GAAATAAAGCCGGGGTTGGGGTATCCCCTCGAAAATAACGG
66 GAAATAAAACCGAGGTTAGAGTATCCCCTCGAAAATAACAG
* * * *
1556770 GGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGA-T-GAA-AAATTGATGTTTA
1 GGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATTAGAAGAAATTAATATTTA
* * *
1556832 GAAATAAAATCGAGGTTAGAGTGTCCCCTCGGAAATAACAG
66 GAAATAAAACCGAGGTTAGAGTATCCCCTCGAAAATAACAG
1556873 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
1556888 GATTGTGAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
103 59 0.57
104 2 0.02
105 1 0.01
106 42 0.40
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (106 bp):
GGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATTAGAAGAAATTAATATTTA
GAAATAAAACCGAGGTTAGAGTATCCCCTCGAAAATAACAG
Found at i:1556936 original size:51 final size:51
Alignment explanation
Indices: 1556874--1556989 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
1556864 AAATAACAGG
* * *
1556874 GTTGGAGTATCCCCGATTG-TGAAAAGTCGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGCGGAAAA-TCGGTGTTTTAGAAATAAAACCGGA
* * * *
1556925 GTTGGAATATCCCCGATTGCGGAGAATTGGTGTTTTAGAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTGCGGAAAATCGGTGTTTTAGAAATAAAACCGGA
1556976 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
1556990 TCGAAAATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 52 0.93
52 4 0.07
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGCGGAAAATCGGTGTTTTAGAAATAAAACCGGA
Found at i:1557060 original size:79 final size:79
Alignment explanation
Indices: 1556926--1557128 Score: 264
Period size: 79 Copynumber: 2.6 Consensus size: 79
1556916 AAAATCGGAG
* * * * * *
1556926 TTGGAATATCCCCGATTGCGGAGAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGGGATTGGAGTATCCCCT
1556991 C-GAAAATAACGGGC
66 CAG-AAATAACGGGC
* * *
1557005 TTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATGAAACCGGGATTGGAGTGTCCCCT
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGGGATTGGAGTATCCCCT
*
1557070 CAGAAATAACGGGG
66 CAGAAATAACGGGC
* * * *
1557084 TTGGAGTATCCCCAATTGTGAAAAGTAGATGTTTTGGAAATAAAA
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAA
1557129 TCGAAGTTGG
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
79 106 0.99
80 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGGGATTGGAGTATCCCCT
CAGAAATAACGGGC
Found at i:1557078 original size:209 final size:205
Alignment explanation
Indices: 1556767--1557198 Score: 677
Period size: 209 Copynumber: 2.1 Consensus size: 205
1556757 TCGAAAATAA
* *
1556767 CGGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTA
1 CGGGGTTGGAGTATCCCCTCAAAAATAACGGGCTTGGAGTATCCCCGATGAAAAATTGATGTTTA
* * *
1556832 GAAATAAAATCGAGGTTAGAGTGTCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGATTGTGAA
66 GAAATAAAACCGAGGTTAGAGTGTCCCCTCAGAAATAACAGGGTTGGAGTATCCCCAATTGTGAA
* * * * *
1556897 AAGTCGGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTGCGGAGAATTGGTGTTTTA
131 AAGTAGATGTTTTGGAAATAAAATCGAAGTTGGAATATCCCCGATTACGGAGAATTGGTATTTTA
1556962 GAAATAAAAC
196 GAAATAAAAC
*
1556972 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGCTTGGAGTATCCCCGATTATGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTCAAAAATAACGGGCTTGGAGTATCCCCG---ATGAAAAATTGATG-
* * *
1557037 TTTAGAAATGAAACCG-GGATTGGAGTGTCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAATT
62 TTTAGAAATAAAACCGAGG-TTAGAGTGTCCCCTCAGAAATAACAGGGTTGGAGTATCCCCAATT
1557101 GTGAAAAGTAGATGTTTTGGAAATAAAATCGAAGTTGGAATATCCCCGATTACGGAGAATTGGTA
126 GTGAAAAGTAGATGTTTTGGAAATAAAATCGAAGTTGGAATATCCCCGATTACGGAGAATTGGTA
1557166 TTTTAGAAATAAAAC
191 TTTTAGAAATAAAAC
*
1557181 CGGGGTTAGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
1557199 GATGAAGAAA
Statistics
Matches: 207, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
205 44 0.21
208 16 0.08
209 147 0.71
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (205 bp):
CGGGGTTGGAGTATCCCCTCAAAAATAACGGGCTTGGAGTATCCCCGATGAAAAATTGATGTTTA
GAAATAAAACCGAGGTTAGAGTGTCCCCTCAGAAATAACAGGGTTGGAGTATCCCCAATTGTGAA
AAGTAGATGTTTTGGAAATAAAATCGAAGTTGGAATATCCCCGATTACGGAGAATTGGTATTTTA
GAAATAAAAC
Found at i:1557175 original size:51 final size:51
Alignment explanation
Indices: 1557115--1557233 Score: 121
Period size: 51 Copynumber: 2.3 Consensus size: 51
1557105 AAAGTAGATG
* * * * * * *
1557115 TTTTGGAAATAAAATCGAAGTTGGAATATCCCCGATTACGGAGAATTGGTA
1 TTTTAGAAATAAAATCGAAGTTAGAATATCCCCGATGAAGAAAAATTGATA
* ** * *
1557166 TTTTAGAAATAAAACCGGGGTTAGAGTATCCCCGATGAAGAAAAATTGATG
1 TTTTAGAAATAAAATCGAAGTTAGAATATCCCCGATGAAGAAAAATTGATA
*
1557217 TTTTAGAAATGAAATCG
1 TTTTAGAAATAAAATCG
1557234 GGATTGGAGT
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.29
Consensus pattern (51 bp):
TTTTAGAAATAAAATCGAAGTTAGAATATCCCCGATGAAGAAAAATTGATA
Found at i:1557238 original size:181 final size:181
Alignment explanation
Indices: 1557008--1557430 Score: 623
Period size: 181 Copynumber: 2.3 Consensus size: 181
1556998 AACGGGCTTG
* *
1557008 GAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATGAAACCGGGATTGGAGTGTCCCCTC-A
1 GAGTATCCCCGATGAAGAAAAATTGATGTTTTAGAAATGAAACCGGGATTGGAGTGTCCCCTCGA
*
1557072 GAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAGTAGATGTTTTGGAAATAAAATCGAAGTT
66 -AAATAACGGGGTTGGAGTATACCCAATTGTGAAAAGTAGATGTTTTGGAAATAAAATCGAAGTT
* * * *
1557137 GGAATATCCCCGATTACGGAGAATTGGTATTTTAGAAATAAAACCGGGGTTA
130 GGAATATCCCCGATTACGGAAAATGGGTATTTTAGAAATAAAACCAGAGTTA
* *
1557189 GAGTATCCCCGATGAAGAAAAATTGATGTTTTAGAAATGAAATCGGGATTGGAGTGTCTCCTCGA
1 GAGTATCCCCGATGAAGAAAAATTGATGTTTTAGAAATGAAACCGGGATTGGAGTGTCCCCTCGA
* * * * *
1557254 AAATAACGGGGTTGGAGTATACCCGATTGTGAAAAGTCGGTGTTTTGGATATAAAATCGGAGTTG
66 AAATAACGGGGTTGGAGTATACCCAATTGTGAAAAGTAGATGTTTTGGAAATAAAATCGAAGTTG
* * * * * *
1557319 GAGTATCCTCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGAGTTG
131 GAATATCCCCGATTACGGAAAATGGGTATTTTAGAAATAAAACCAGAGTTA
* * *
1557370 GAGTATCCCCGATGAAGAAAAATTGATGTTTTGGAAATGGAACCGGGATTGGAGTATCCCC
1 GAGTATCCCCGATGAAGAAAAATTGATGTTTTAGAAATGAAACCGGGATTGGAGTGTCCCC
1557431 GAGATGAAAA
Statistics
Matches: 216, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
181 215 1.00
182 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (181 bp):
GAGTATCCCCGATGAAGAAAAATTGATGTTTTAGAAATGAAACCGGGATTGGAGTGTCCCCTCGA
AAATAACGGGGTTGGAGTATACCCAATTGTGAAAAGTAGATGTTTTGGAAATAAAATCGAAGTTG
GAATATCCCCGATTACGGAAAATGGGTATTTTAGAAATAAAACCAGAGTTA
Found at i:1557268 original size:390 final size:386
Alignment explanation
Indices: 1556572--1557379 Score: 995
Period size: 390 Copynumber: 2.1 Consensus size: 386
1556562 CGATGATTTG
* * * *
1556572 GAAATAAAATCGGGATTGGAGCATCCCCTCGGAAATAACGGGGTTGAAGTATCCCCGACTATAAA
1 GAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGCTTGAAGTATCCCCGACTATAAA
1556637 AAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTA
66 AAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTA
* * * ** **
1556702 TCCCCGATTATAAGAAATTAATATTTAGAAATAAAGCCGGGGTTGGGGTATCCCCTCGAAAATAA
131 TCCCCAATTATAAGAAAGTAATATTTAGAAATAAAACCGAAGTTGGAATATCCCCTCG--AATAA
* * * *
1556767 CGGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTA
194 CGGGATTGGAGTAT--CCTCAAAAAAAACGGGGTTAGAGTATCCCCGATGAAAAATTGATGTTTA
* *
1556832 GAAATAAAATCGAGGTTAGAGTGTCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGATTGTGAA
257 GAAATAAAATCGAGGTTAGAGTGTCCCCTCGAAAATAACAGGGTTGGAGTATACCCGATTGTGAA
* * *
1556897 AAGTCGGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTGCGGAGAATTGGTGTTTTA
322 AAGTCGGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTACGGAAAATGGGTGTTTTA
* * * *
1556962 GAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGCTTGGAGTATCCCCGATTATGAA
1 GAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGCTTGAAGTATCCCCGACTATAAA
* * *
1557027 AAATTGATGTTTTAGAAATGAAACCG-GGATTGGAGTGTCCCCTCAGAAATAACGGGGTTGGAGT
66 AAATTGATGTTTTAGAAATAAAACCGAGG-TTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGT
* * * * * *
1557091 ATCCCCAATTGTGA-AAAGTAGATGTTTTGGAAATAAAATCGAAGTTGGAATAT-CCC-CG-ATT
130 ATCCCCAATTATAAGAAAGTA-AT-ATTTAGAAATAAAACCGAAGTTGGAATATCCCCTCGAATA
* *
1557152 ACGGAGAATT-G-GTAT-TTTAGAAATAAAACCGGGGTTAGAGTATCCCCGATGAAGAAAAATTG
193 ACGG-G-ATTGGAGTATCCTCA-AAA-AAAA-CGGGGTTAGAGTATCCCCGAT---GAAAAATTG
* * * *
1557214 ATGTTTTAGAAATGAAATCG-GGATTGGAGTGTCTCCTCGAAAATAACGGGGTTGGAGTATACCC
250 ATG-TTTAGAAATAAAATCGAGG-TTAGAGTGTCCCCTCGAAAATAACAGGGTTGGAGTATACCC
* * * *
1557278 GATTGTGAAAAGTCGGTGTTTTGGATATAAAATCGGAGTTGGAGTATCCTCGATTATGGAAAATG
313 GATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTACGGAAAATG
1557343 GGTGTTTTA
378 GGTGTTTTA
* *
1557352 GAAATAAAATCAGAGTTGGAGTATCCCC
1 GAAATAAAATCGGGGTTGGAGTATCCCC
1557380 GATGAAGAAA
Statistics
Matches: 359, Mismatches: 46, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
383 2 0.01
384 3 0.01
385 3 0.01
386 29 0.08
387 2 0.01
388 2 0.01
389 23 0.06
390 274 0.76
391 21 0.06
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (386 bp):
GAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGCTTGAAGTATCCCCGACTATAAA
AAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTA
TCCCCAATTATAAGAAAGTAATATTTAGAAATAAAACCGAAGTTGGAATATCCCCTCGAATAACG
GGATTGGAGTATCCTCAAAAAAAACGGGGTTAGAGTATCCCCGATGAAAAATTGATGTTTAGAAA
TAAAATCGAGGTTAGAGTGTCCCCTCGAAAATAACAGGGTTGGAGTATACCCGATTGTGAAAAGT
CGGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTACGGAAAATGGGTGTTTTA
Found at i:1557371 original size:130 final size:128
Alignment explanation
Indices: 1556799--1557379 Score: 385
Period size: 130 Copynumber: 4.5 Consensus size: 128
1556789 AAATAATGGG
* * *
1556799 GTTGGAGTATCCCCGA-T-GAAAAATTGATG-TTTAGAAATAAAATCGAGGTTAGAGTGTCCCCT
1 GTTGGAGTATCCCCGATTAGAAAAATGGGTGTTTTAGAAATAAAATCGA-GTTGGAGTGTCCCCT
* * * *
1556861 CGGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCGGA
65 CGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTAGAAATAAAACCGGA
* * * * * * * *
1556925 GTTGGAATATCCCCGATTGCGGAGAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATT-AGAAAAATGGGTGTTTTAGAAATAAAATC-GAGTTGGAGTGTCCCC
* * * * * *
1556990 TCGAAAATAACGGGCTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATGAAACCGG-
64 TCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTAGAAATAAAACCGGA
* * * ** * * * * *** *
1557054 GATTGGAGTGTCCCC--TCAGAAATAACGGG-GTTGGAG-TATCCCCAATTGTGAAAAGTAGATG
1 G-TTGGAGTATCCCCGATTAGAAA-AATGGGTGTTTTAGAAAT---AAAAT-CGAGTTGGAG-TG
** * * ** * * * *
1557115 T--TTTGGAAATAAAATCGAAGTTGGAATATCCCCGATTACG-GAGAA-TTGGTATTTTAGAAAT
59 TCCCCTCGAAA-ATAA-CGGGGTTGGAGTATCCCCGATT--GTGAAAAGTCGGTGTTTTAGAAAT
*
1557176 AAAACCGGG
120 AAAACCGGA
* * * * * * *
1557185 GTTAGAGTATCCCCGATGAAGAAAAATTGATGTTTTAGAAATGAAATCGGGATTGGAGTGTCTCC
1 GTTGGAGTATCCCCGAT-TAGAAAAATGGGTGTTTTAGAAATAAAATCGAG-TTGGAGTGTCCCC
* * * *
1557250 TCGAAAATAACGGGGTTGGAGTATACCCGATTGTGAAAAGTCGGTGTTTTGGATATAAAATCGGA
64 TCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTAGAAATAAAACCGGA
* * *
1557315 GTTGGAGTATCCTCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGAGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTA-GAAAAATGGGTGTTTTAGAAATAAAATC-GAGTTGGAGTGTCCCC
1557380 GATGAAGAAA
Statistics
Matches: 332, Mismatches: 94, Indels: 54
0.69 0.20 0.11
Matches are distributed among these distances:
126 17 0.05
127 8 0.02
128 11 0.03
129 24 0.07
130 234 0.70
131 17 0.05
132 9 0.03
133 10 0.03
134 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (128 bp):
GTTGGAGTATCCCCGATTAGAAAAATGGGTGTTTTAGAAATAAAATCGAGTTGGAGTGTCCCCTC
GAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTAGAAATAAAACCGGA
Found at i:1557392 original size:51 final size:51
Alignment explanation
Indices: 1557264--1557443 Score: 177
Period size: 51 Copynumber: 3.5 Consensus size: 51
1557254 AAATAACGGG
* * * *
1557264 GTTGGAGTATACCCGATTG-TGAAAAGTCGGTGTTTTGGATATAAAATCGGA
1 GTTGGAGTATCCCCGA-TGATGAAAAATCGGTGTTTTGGAAATAAAATCAGA
* * * * *
1557315 GTTGGAGTATCCTCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATGATGAAAAATCGGTGTTTTGGAAATAAAATCAGA
* * * ** * *
1557366 GTTGGAGTATCCCCGATGAAGAAAAATTGATGTTTTGGAAATGGAA-CCGG
1 GTTGGAGTATCCCCGATGATGAAAAATCGGTGTTTTGGAAATAAAATCAGA
1557416 GATTGGAGTATCCCCGA-GATGAAAAATC
1 G-TTGGAGTATCCCCGATGATGAAAAATC
1557444 TAGAAATTTA
Statistics
Matches: 105, Mismatches: 22, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
50 13 0.12
51 92 0.88
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATGATGAAAAATCGGTGTTTTGGAAATAAAATCAGA
Found at i:1559885 original size:19 final size:18
Alignment explanation
Indices: 1559861--1559923 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
1559851 AGAGATACAT
1559861 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
1559880 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1559893 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
1559912 TGTATCGATACA
1 TGTATCGATACA
1559924 GTTACTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1559895 original size:32 final size:32
Alignment explanation
Indices: 1559854--1559923 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
1559844 GCTTTGTAGA
1559854 GATACATTGTATCGATACAAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
*
1559886 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
1559918 GATACA
1 GATACA
1559924 GTTACTATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGTATC
Found at i:1559898 original size:13 final size:13
Alignment explanation
Indices: 1559880--1559904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1559870 ACAAAACTTA
1559880 TGTATCGATACAT
1 TGTATCGATACAT
1559893 TGTATCGATACA
1 TGTATCGATACA
1559905 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1559938 original size:21 final size:21
Alignment explanation
Indices: 1559912--1559965 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
1559902 ACAACACTTA
1559912 TGTATCGATACAGTTACTATT
1 TGTATCGATACAGTTACTATT
1559933 TGTATCGATACAGTTACTATT
1 TGTATCGATACAGTTACTATT
1559954 TGTATCGATACA
1 TGTATCGATACA
1559966 AATTGTTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (21 bp):
TGTATCGATACAGTTACTATT
Found at i:1560682 original size:57 final size:57
Alignment explanation
Indices: 1560429--1560764 Score: 243
Period size: 58 Copynumber: 5.8 Consensus size: 57
1560419 ATTATGAAAA
* * * * * * *
1560429 AAAAAT-ACTAAAATGACCCTAAAATGGAT-AAATTTGCATAATGGTTCTTAAATCAT
1 AAAAATGACTAAAATAATCCTAAAATGTATGAAA-TTACATAATAGTCCCTAAATCAT
* * *
1560485 AAAAAATGATTAAAATAATTCTAAAATGTA-GAAAATTACATAATAGTCCATAAATCAT
1 -AAAAATGACTAAAATAATCCTAAAATGTATG-AAATTACATAATAGTCCCTAAATCAT
* ** * * * *
1560543 AGAATATGACTAAAATGGTCTTGAAAT-TATGAAATTACATAATAGTCTCTAAATCAGAAA
1 A-AAAATGACTAAAATAATCCTAAAATGTATGAAATTACATAATAGTCCCTAAATC---AT
* * * * * * * *
1560603 AAAAATTACTAATATAACCCTAAAATGCATGAATTTGCATAATGGTCCCTAACTCAT
1 AAAAATGACTAAAATAATCCTAAAATGTATGAAATTACATAATAGTCCCTAAATCAT
* ** * *
1560660 AAAAATGACTAAAATTATCCTAAAATAAATGAAATTACATGACAGTCCCTCAAA-CAT
1 AAAAATGACTAAAATAATCCTAAAATGTATGAAATTACATAATAGTCCCT-AAATCAT
* * *
1560717 GAAAAATGCCTAAAATAA-CTCTAAAATGCATGAAATGACATAATAGTC
1 -AAAAATGACTAAAATAATC-CTAAAATGTATGAAATTACATAATAGTC
1560765 TTAATATGCA
Statistics
Matches: 214, Mismatches: 53, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
57 75 0.35
58 95 0.44
59 20 0.09
60 24 0.11
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.28
Consensus pattern (57 bp):
AAAAATGACTAAAATAATCCTAAAATGTATGAAATTACATAATAGTCCCTAAATCAT
Found at i:1560760 original size:175 final size:177
Alignment explanation
Indices: 1560355--1560765 Score: 441
Period size: 175 Copynumber: 2.4 Consensus size: 177
1560345 TGCATAAATT
* *
1560355 GTCC-TAAATCATAGAAAAT-ACTAAAATGAC-CTTAAAATGCATGAAATTG-CATAAGCAATC-
1 GTCCATAAATCATAGAAAATGACTAAAAT-ACTCTTAAAATGCATGAAA-TGACATAA-TAGTCT
* * * * *
1560415 CTAAATTATGAAAAAAAAATACTAAAATGACCCTAAAATGGATAAATTTGCATAATGGTTCTTAA
63 CTAAATCATGAAAAAAAAATACTAAAATAACCCTAAAATGCATAAATTTGCATAATGGTCCCTAA
* * ** *
1560480 ATCATAAAAAATGATTAAAATAATTCTAAAATGTAGAAAATTACATAATA
128 ATCATAAAAAATGACTAAAATAATCCTAAAATAAAGAAAATTACATAACA
* ** * * *
1560530 GTCCATAAATCATAGAATATGACTAAAATGGTCTTGAAAT-TATGAAATTACATAATAGTCTCTA
1 GTCCATAAATCATAGAAAATGACTAAAATACTCTTAAAATGCATGAAATGACATAATAGTCTCTA
* * * *
1560594 AATCA-GAAAAAAAATTACTAATATAACCCTAAAATGCATGAATTTGCATAATGGTCCCTAACTC
66 AATCATGAAAAAAAAATACTAAAATAACCCTAAAATGCATAAATTTGCATAATGGTCCCTAAATC
* *
1560658 AT-AAAAATGACTAAAATTATCCTAAAATAAATG-AAATTACATGACA
131 ATAAAAAATGACTAAAATAATCCTAAAATAAA-GAAAATTACATAACA
* *
1560704 GTCCCTCAAA-CAT-GAAAAATGCCTAAAATAACTC-TAAAATGCATGAAATGACATAATAGTCT
1 GTCCAT-AAATCATAG-AAAATGACTAAAAT-ACTCTTAAAATGCATGAAATGACATAATAGTCT
1560766 TAATATGCAT
Statistics
Matches: 194, Mismatches: 32, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
173 1 0.01
174 60 0.31
175 86 0.44
176 32 0.16
177 15 0.08
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (177 bp):
GTCCATAAATCATAGAAAATGACTAAAATACTCTTAAAATGCATGAAATGACATAATAGTCTCTA
AATCATGAAAAAAAAATACTAAAATAACCCTAAAATGCATAAATTTGCATAATGGTCCCTAAATC
ATAAAAAATGACTAAAATAATCCTAAAATAAAGAAAATTACATAACA
Found at i:1563098 original size:60 final size:60
Alignment explanation
Indices: 1562972--1563747 Score: 867
Period size: 60 Copynumber: 13.3 Consensus size: 60
1562962 TTCACCCTTT
**
1562972 AGTCCTCAAAGAGCAGGACG-----TCTTTTAAAAGCCCACACAAGTTGGTGGCA-CCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCATTTTTC
1563027 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* * *
1563087 AATCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
**
1563148 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* * * *
1563208 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACATAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCATTTTTC
* * * *
1563269 AGTCCTCAAAGAGCAGGACTCCTTTTCTTTCAAGGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* * * **
1563329 AGTCCTCAAAGAGCAGGACTCCTTTTCTTTCAAAGCCCACACAAGTTAGTGGCA-CCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* * * * *
1563388 AATCCTCAAAGAGTAGGACGTCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
1 AGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* * * * * *
1563448 TAGACCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCGCACACGAGTTGGTGGCACTTTTC
1 -AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCATTTTTC
* * *
1563510 AGTTCC-CAAAGAGCAGGAC-ACTTTTC----AAAGCCCACACAAGTTGGTGACATTTTCC
1 AG-TCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* **
1563565 AGTCCTCAAAGAGCAGGACACC---TC--TTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* * **
1563620 AGTCCTCAAAGAGCAGGACGAC-TTTC----AAAGCTCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
* *
1563675 AGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACGAGTTGGTGGCACTTTTT-
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTTC
1563730 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
1563748 TACACTTTAT
Statistics
Matches: 631, Mismatches: 68, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
53 2 0.00
54 3 0.00
55 195 0.31
56 4 0.01
57 2 0.00
59 49 0.08
60 203 0.32
61 166 0.26
62 7 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
Found at i:1563214 original size:121 final size:117
Alignment explanation
Indices: 1562992--1563747 Score: 884
Period size: 121 Copynumber: 6.4 Consensus size: 117
1562982 GAGCAGGACG
**
1562992 TCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTT
1 TCTTTT-AAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTTTTC-TT
*
1563057 TAAAGCCCACACAAGTTGGTGGCATTTTTCAATCCTCAAAGAGCAGGACACCTTT
64 TAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACACCTTT
1563112 TCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
1 T-CTTTTAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAGGACGCCTTTTC--
** ** *
1563177 TTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTT
62 TTTAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACACCTTT
* *
1563233 TCTTTTCAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACTCCTTTTCTT
1 TCTTTT-AAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAGGACGCCTTTTCTT
* *
1563298 TCAAGGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACTCCTTT
64 T-AAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAGGACACCTTT
* * ** * * * *
1563354 TCTTTCAAAGCCCACACAAGTTAGTGGCACCTTCAATCCTCAAAGAGTAGGACGTCTTCTCCTTT
1 TCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTT-TTCTTT
* ** *
1563419 CAAAGCCCACACAAGTTGGTGGCATTTTCTAGACCTCAAAGAGCAGGATGCTTTT
65 -AAAGCCCACACAAGTTGGTGGCATTTTC-AGTCCTCAAAGAGCAGGACACCTTT
* * *
1563474 TCTTTTCAAAGCGCACACGAGTTGGTGGCACTTTTCAGTTCC-CAAAGAGCAGGAC-ACTTTTC-
1 TCTTTT-AAAGCCCACACAAGTTGGTGGCA-TTTTCAG-TCCTCAAAGAGCAGGACGCCTTTTCT
*
1563536 --AAAGCCCACACAAGTTGGTGACATTTTCCAGTCCTCAAAGAGCAGGACACC---
63 TTAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAGGACACCTTT
* *
1563587 TC--TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGAC-TTTC---
1 TCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTT
* *
1563646 AAAGCTCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TT
65 AAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACACCTTT
* *
1563699 TC----AAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGA
1563748 TACACTTTAT
Statistics
Matches: 564, Mismatches: 55, Indels: 44
0.85 0.08 0.07
Matches are distributed among these distances:
109 3 0.01
110 133 0.24
111 7 0.01
112 2 0.00
113 2 0.00
116 44 0.08
117 1 0.00
119 25 0.04
120 138 0.24
121 163 0.29
122 43 0.08
123 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (117 bp):
TCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTA
AAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACACCTTT
Found at i:1563575 original size:55 final size:55
Alignment explanation
Indices: 1562972--1563747 Score: 731
Period size: 55 Copynumber: 13.3 Consensus size: 55
1562962 TTCACCCTTT
* **
1562972 AGTCCTCAAAGAGCAGGACGT-CTTTTAAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGAC-TACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
**
1563027 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGACTACTTTTC----AAAGCCCACACAAGTTGGTGGCA-TTTTC
*
1563087 AATCCTCAAAGAGCAGGAC-ACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACTA-CTTTT-C----AAAGCCCACACAAGTTGGTGGCATTTT-C
* * **
1563148 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGA---C--TACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* *
1563208 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACATAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGA--C---TACTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
* *
1563269 AGTCCTCAAAGAGCAGGACTCCTTTTCTTTCAAGGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACTAC---T-TTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
* * **
1563329 AGTCCTCAAAGAGCAGGACTCCTTTTCTTTCAAAGCCCACACAAGTTAGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACTAC---T-TTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * *
1563388 AATCCTCAAAGAGTAGGACGTCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
1 AGTCCTCAAAGAGCAGGA---CTACT--TTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * *
1563448 TAGACCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCGCACACGAGTTGGTGGCACTTTTC
1 -AGTCCTCAAAGAGCAGGA--C---TACTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
*
1563510 AGTTCC-CAAAGAGCAGGAC-ACTTTTCAAAGCCCACACAAGTTGGTGACATTTTCC
1 AG-TCCTCAAAGAGCAGGACTACTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
* *
1563565 AGTCCTCAAAGAGCAGGAC-ACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACTA-CTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* * *
1563620 AGTCCTCAAAGAGCAGGACGAC-TTTCAAAGCTCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACTACTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* * *
1563675 AGTCCTCAAAGAGCAGGAC-ACCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACTACTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
1563730 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
1563748 TACACTTTAT
Statistics
Matches: 632, Mismatches: 51, Indels: 76
0.83 0.07 0.10
Matches are distributed among these distances:
54 11 0.02
55 204 0.32
56 10 0.02
59 45 0.07
60 198 0.31
61 144 0.23
62 10 0.02
63 4 0.01
64 1 0.00
66 5 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACTACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:1563936 original size:40 final size:42
Alignment explanation
Indices: 1563840--1563936 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 42
1563830 GACGTACTCT
* *
1563840 TTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTC
1 TTTTC-CTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTTC
* * * *
1563883 TCTTCCTTAGTCCTCAAGTAGCAAGAC-CTATTTC-ATTC-TC
1 TTTTCCTTTGTCCTCAAGAAGCAAGACACT-TTCCTATTCTTC
1563923 TTTTCCTTTGTCCT
1 TTTTCCTTTGTCCT
1563937 TGAAAAGTGG
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
40 14 0.31
41 5 0.11
42 22 0.49
43 4 0.09
ACGTcount: A:0.18, C:0.29, G:0.10, T:0.43
Consensus pattern (42 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTTC
Found at i:1564463 original size:17 final size:18
Alignment explanation
Indices: 1564441--1564484 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 18
1564431 GTTTGAAAGA
*
1564441 AAAAAAATCAAAAA-AAT
1 AAAAAAATAAAAAATAAT
1564458 -AAAAAATAAAAAATAAT
1 AAAAAAATAAAAAATAAT
1564475 AAAAAAATAA
1 AAAAAAATAA
1564485 TAGTAACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
18 9 0.38
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAAAAATAAT
Found at i:1564622 original size:13 final size:13
Alignment explanation
Indices: 1564604--1564636 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1564594 ACATAAGTGT
*
1564604 TGTATCGATATAA
1 TGTATCGATACAA
1564617 TGTATCGATACAA
1 TGTATCGATACAA
1564630 TGTATCG
1 TGTATCG
1564637 TTAGGAAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1564698 original size:13 final size:13
Alignment explanation
Indices: 1564680--1564705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1564670 CATTTTTCTG
1564680 TGTATCGATACAT
1 TGTATCGATACAT
1564693 TGTATCGATACAT
1 TGTATCGATACAT
1564706 CTATTCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1564724 original size:34 final size:33
Alignment explanation
Indices: 1564660--1564726 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
1564650 GCTAAGGAAA
*
1564660 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATTATTCTGTGTATCGATACAT
* *
1564693 TGTATCGATACATCTATTCTTTGTATTGATACAT
1 TGTATCGATACAT-TATTCTGTGTATCGATACAT
1564727 CTAGGAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 13 0.43
34 17 0.57
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (33 bp):
TGTATCGATACATTATTCTGTGTATCGATACAT
Found at i:1565825 original size:12 final size:12
Alignment explanation
Indices: 1565810--1565836 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
1565800 GTTTTTTTAC
1565810 ATGTTTATCTTG
1 ATGTTTATCTTG
1565822 ATGTTTATCTTG
1 ATGTTTATCTTG
1565834 ATG
1 ATG
1565837 ATATCTTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.07, G:0.19, T:0.56
Consensus pattern (12 bp):
ATGTTTATCTTG
Found at i:1567240 original size:13 final size:13
Alignment explanation
Indices: 1567222--1567246 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1567212 CAAAAAGTGT
1567222 TGTATCGATACAA
1 TGTATCGATACAA
1567235 TGTATCGATACA
1 TGTATCGATACA
1567247 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1567257 original size:32 final size:33
Alignment explanation
Indices: 1567202--1567265 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
1567192 TTCAACAATT
1567202 TGTATCGATACAAAAAGTGTTGTATCGATACAA
1 TGTATCGATACAAAAAGTGTTGTATCGATACAA
*
1567235 TGTATCGATAC-ATAAGTGTTGTATCGATACA
1 TGTATCGATACAAAAAGTGTTGTATCGATACA
1567266 TAAGTTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (33 bp):
TGTATCGATACAAAAAGTGTTGTATCGATACAA
Found at i:1567259 original size:19 final size:19
Alignment explanation
Indices: 1567201--1567283 Score: 97
Period size: 19 Copynumber: 4.6 Consensus size: 19
1567191 TTTCAACAAT
*
1567201 TTGTATCGATACAAAAAGTG
1 TTGTATCGATAC-ATAAGTG
1567221 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
1567235 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
1567253 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
1567272 TTGTATCGATAC
1 TTGTATCGATAC
1567284 TATTTAAGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
13 11 0.20
15 2 0.04
17 2 0.04
19 29 0.52
20 12 0.21
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:1570538 original size:53 final size:52
Alignment explanation
Indices: 1570413--1570547 Score: 159
Period size: 51 Copynumber: 2.6 Consensus size: 52
1570403 TGTTGAGTTT
* * * **
1570413 CTCAATTCTTCACAATCGGGGATATTCTC-ACTCCGATTTTATTTTCAAAACG
1 CTCAATTTTTCACAATCGGGGATACTC-CAACTCCGATTTTATTTCCAAAAAA
* *
1570465 CT-AA-TTTTCTATAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAAA
1 CTCAATTTTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAA
1570516 CATCAATTTTTCACAATCGGGGATACTCCAAC
1 C-TCAATTTTTCACAATCGGGGATACTCCAAC
1570548 CCCGTTAATC
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
50 5 0.07
51 36 0.51
52 3 0.04
53 21 0.30
54 5 0.07
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (52 bp):
CTCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAA
Found at i:1570613 original size:78 final size:80
Alignment explanation
Indices: 1570478--1570629 Score: 227
Period size: 78 Copynumber: 1.9 Consensus size: 80
1570468 ATTTTCTATA
* * *
1570478 ATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAAACATCAATTTTTCACAATCGGGGATACT
1 ATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAAACATCAATTTTCCACAATCGGGGATACT
1570543 CCAACCCCGTTAATC
66 CCAACCCCGTTAATC
* * * *
1570558 ATCGGGGATACTCTAACCCCGGTTTTATTT-C-TAAAACATTAATTTTCCACAATCGGGGATACT
1 ATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAAACATCAATTTTCCACAATCGGGGATACT
1570621 CCAACCCCG
66 CCAACCCCG
1570630 GTTTTATTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 38 0.58
79 1 0.02
80 26 0.40
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAAACATCAATTTTCCACAATCGGGGATACT
CCAACCCCGTTAATC
Found at i:1570634 original size:51 final size:52
Alignment explanation
Indices: 1570558--1570730 Score: 233
Period size: 52 Copynumber: 3.3 Consensus size: 52
1570548 CCCGTTAATC
* **
1570558 ATCGGGGATACTCTAACCCCGGTTTTATTTCT-AAAACATTAATTTTCCACA
1 ATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAAACACCAATTTTCCACA
* **
1570609 ATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCCTTTA
1 ATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAAACACCAATTTTCC-ACA
* * *
1570661 ATCGGGGATACTCCAACTCCGATTTTATTTCTAAAAACACCAATTTTTCACA
1 ATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAAACACCAATTTTCCACA
*
1570713 ATCGAGGATACTCCAACC
1 ATCGGGGATACTCCAACC
1570731 TCATTATTTC
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
50 1 0.01
51 43 0.41
52 46 0.43
53 16 0.15
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
ATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAAACACCAATTTTCCACA
Found at i:1570730 original size:182 final size:183
Alignment explanation
Indices: 1570423--1570761 Score: 513
Period size: 182 Copynumber: 1.9 Consensus size: 183
1570413 CTCAATTCTT
* * * *
1570423 CACAATCGGGGATATTCTCACTCCGATTTTATTTTCAAAACGCTAATTTTCTATAATCGGGGATA
1 CACAATCGGGGATACTCTCACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
* * * *
1570488 CTCCAACTCTGATTTTATTTCCAAAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGT
66 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCAT
*
1570553 TA-ATCATCGGGGATACTCTAACCCCGGTTTTATTTCTAAAACATTAATTTTC
131 TATATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTC
* *
1570605 CACAATCGGGGATACTC-CAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCTC-ACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGA
* *
1570669 TACTCCAACTCCGATTTTATTT-CTAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTC
64 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCC
*
1570733 ATTATTTCATCGGGGATACTCCAACCCCG
129 ATTATATCATCGGGGATACTCCAACCCCG
1570762 TCATCTTCGA
Statistics
Matches: 140, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
181 1 0.01
182 84 0.60
183 55 0.39
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (183 bp):
CACAATCGGGGATACTCTCACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCAT
TATATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTC
Found at i:1573428 original size:34 final size:35
Alignment explanation
Indices: 1573390--1573456 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1573380 CCTTACAACA
1573390 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1573424 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1573457 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1573933 original size:13 final size:13
Alignment explanation
Indices: 1573915--1573940 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1573905 CAATTTTTTG
1573915 TGTATCGATACAT
1 TGTATCGATACAT
1573928 TGTATCGATACAT
1 TGTATCGATACAT
1573941 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1574026 original size:20 final size:20
Alignment explanation
Indices: 1574001--1574073 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1573991 AACTTTTTTT
1574001 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1574021 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1574042 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1574062 ATGTATCGATAC
1 ATGTATCGATAC
1574074 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1574052 original size:41 final size:42
Alignment explanation
Indices: 1573979--1574073 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 42
1573969 CTGCCAAGAA
*
1573979 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
*
1574021 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
1574062 ATGTATCGATAC
1 ATGTATCGATAC
1574074 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 37 0.73
42 14 0.27
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
Found at i:1574731 original size:21 final size:21
Alignment explanation
Indices: 1574690--1574733 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1574680 CTCCCCTTTA
* *
1574690 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1574711 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1574732 TC
1 TC
1574734 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1575920 original size:13 final size:13
Alignment explanation
Indices: 1575902--1575926 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1575892 ACTGAAGCAA
1575902 TGTATCGATACAT
1 TGTATCGATACAT
1575915 TGTATCGATACA
1 TGTATCGATACA
1575927 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1578745 original size:34 final size:35
Alignment explanation
Indices: 1578707--1578773 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1578697 CCTTACAACA
1578707 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1578741 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1578774 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1579250 original size:13 final size:13
Alignment explanation
Indices: 1579232--1579257 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1579222 CAATTTTTTG
1579232 TGTATCGATACAT
1 TGTATCGATACAT
1579245 TGTATCGATACAT
1 TGTATCGATACAT
1579258 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1579343 original size:20 final size:20
Alignment explanation
Indices: 1579318--1579390 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1579308 AACTTTTTTT
1579318 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1579338 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1579359 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1579379 ATGTATCGATAC
1 ATGTATCGATAC
1579391 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1579369 original size:41 final size:42
Alignment explanation
Indices: 1579296--1579390 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 42
1579286 CTGCCAAGAA
*
1579296 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
*
1579338 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
1579379 ATGTATCGATAC
1 ATGTATCGATAC
1579391 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 37 0.73
42 14 0.27
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
Found at i:1581219 original size:17 final size:17
Alignment explanation
Indices: 1581197--1581233 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
1581187 TGAATGTTCA
1581197 AATTCATAAATATACAT
1 AATTCATAAATATACAT
* *
1581214 AATTCATTAATATACTT
1 AATTCATAAATATACAT
1581231 AAT
1 AAT
1581234 ATCGTTCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTCATAAATATACAT
Found at i:1581258 original size:16 final size:16
Alignment explanation
Indices: 1581237--1581278 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1581227 ACTTAATATC
*
1581237 GTTCATGTATATTCAT
1 GTTCATGAATATTCAT
*
1581253 GTTCATGAATATTCAA
1 GTTCATGAATATTCAT
*
1581269 ATTCATGAAT
1 GTTCATGAAT
1581279 TTATATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (16 bp):
GTTCATGAATATTCAT
Found at i:1582580 original size:14 final size:15
Alignment explanation
Indices: 1582547--1582604 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
1582537 AAACTCAATC
*
1582547 TAAATTATTTAATAA
1 TAAATAATTTAATAA
*
1582562 TAAATAATTTTAT-A
1 TAAATAATTTAATAA
*
1582576 TAAATTTAA-TTAAAAA
1 TAAA--TAATTTAATAA
1582592 TAAATAA-TTAATA
1 TAAATAATTTAATA
1582605 TAATTTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 13 0.37
15 14 0.40
16 8 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAATAATTTAATAA
Found at i:1582894 original size:2 final size:2
Alignment explanation
Indices: 1582887--1582922 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1582877 AACTTAGTAC
1582887 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1582923 AGTTACAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1583214 original size:16 final size:18
Alignment explanation
Indices: 1583181--1583217 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1583171 ATCTGGCTAG
1583181 AAAAGTGTGAGTTGAAAA
1 AAAAGTGTGAGTTGAAAA
1583199 AAAAGTGTG-GTT-AAAA
1 AAAAGTGTGAGTTGAAAA
1583215 AAA
1 AAA
1583218 TAATATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 3 0.16
18 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22
Consensus pattern (18 bp):
AAAAGTGTGAGTTGAAAA
Found at i:1583416 original size:13 final size:14
Alignment explanation
Indices: 1583400--1583433 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
1583390 AGTTTTTTAA
1583400 TTAATTTTTA-TTT
1 TTAATTTTTAGTTT
1583413 TTAATTTTTAGTTTT
1 TTAATTTTTAG-TTT
1583428 TTAATT
1 TTAATT
1583434 AATTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
15 9 0.47
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (14 bp):
TTAATTTTTAGTTT
Found at i:1583650 original size:18 final size:18
Alignment explanation
Indices: 1583627--1583668 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
1583617 CTAATTGAAA
1583627 AATTAAAATTTTTTATCC
1 AATTAAAATTTTTTATCC
1583645 AATTAAAATTTTTTATCC
1 AATTAAAATTTTTTATCC
*
1583663 ATTTAA
1 AATTAA
1583669 TATGATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTAAAATTTTTTATCC
Found at i:1584687 original size:20 final size:20
Alignment explanation
Indices: 1584667--1584703 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
1584657 GATAATGATA
*
1584667 AATTTTAT-TTTTTAAAAAT
1 AATTTTATATATTTAAAAAT
1584686 AATTTTATATATTTAAAA
1 AATTTTATATATTTAAAA
1584704 TATTATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTTTATATATTTAAAAAT
Found at i:1585077 original size:21 final size:21
Alignment explanation
Indices: 1585035--1585077 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
1585025 GTTTAATTTT
**
1585035 TTTAAAAAATTTTTATGTAAA
1 TTTAAAAAATTTTTATAAAAA
1585056 TTTAAAGAAATTTTT-TAAAAA
1 TTTAAA-AAATTTTTATAAAAA
1585077 T
1 T
1585078 ATATTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (21 bp):
TTTAAAAAATTTTTATAAAAA
Found at i:1588699 original size:22 final size:23
Alignment explanation
Indices: 1588667--1588712 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
1588657 TAATATCTAA
*
1588667 TAATTAAAAAA-ATATTTAAATT
1 TAATTAAAAAATATATATAAATT
*
1588689 TAATTATAAAATATATATAAATT
1 TAATTAAAAAATATATATAAATT
1588712 T
1 T
1588713 TAATAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTAAAAAATATATATAAATT
Found at i:1589328 original size:28 final size:29
Alignment explanation
Indices: 1589270--1589328 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 29
1589260 TATATTTGGA
* * *
1589270 TTATTATTAGTTATATTAATAGTGAAGTT
1 TTATGATTAGTTATATTAATAGTAAAATT
1589299 TTATGATT-GTTATATTAATAGTAAAATT
1 TTATGATTAGTTATATTAATAGTAAAATT
1589327 TT
1 TT
1589329 TTGAGTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 20 0.74
29 7 0.26
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.53
Consensus pattern (29 bp):
TTATGATTAGTTATATTAATAGTAAAATT
Found at i:1592447 original size:11 final size:10
Alignment explanation
Indices: 1592426--1592471 Score: 56
Period size: 11 Copynumber: 4.4 Consensus size: 10
1592416 TCTGGTTTTC
1592426 ATAAAAAAAA
1 ATAAAAAAAA
1592436 ATAAATAAAAA
1 ATAAA-AAAAA
1592447 ATAAAAAGAAA
1 ATAAAAA-AAA
* *
1592458 CTATAAAAAA
1 ATAAAAAAAA
1592468 ATAA
1 ATAA
1592472 TAATAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
10 12 0.40
11 18 0.60
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (10 bp):
ATAAAAAAAA
Found at i:1592452 original size:21 final size:21
Alignment explanation
Indices: 1592426--1592471 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1592416 TCTGGTTTTC
1592426 ATAAAAA-AAAATAAATAAAAA
1 ATAAAAAGAAAATAAA-AAAAA
* *
1592447 ATAAAAAGAAACTATAAAAAA
1 ATAAAAAGAAAATAAAAAAAA
1592468 ATAA
1 ATAA
1592472 TAATAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (21 bp):
ATAAAAAGAAAATAAAAAAAA
Found at i:1606531 original size:62 final size:61
Alignment explanation
Indices: 1606454--1606636 Score: 242
Period size: 62 Copynumber: 3.0 Consensus size: 61
1606444 AACACTTGTT
* * *
1606454 CAGTCCTTAAAGAGCAGGACTCCTTTTTCTTTAAAAGTCCACACAAATTGGTGGCACCCATG
1 CAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTAAAAG-CCACACAAGTTGGTGGCACCCATG
* * * * *
1606516 CAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTAAAGCTCACATAAGTTGATGGCACCCATT
1 CAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTAAAAGC-CACACAAGTTGGTGGCACCCATG
*
1606578 CAGTCCTCAAAGA-CTAGGACGCCTTTTTCTTTAAAAGCCCACTCAAGTTGGTGGCACCC
1 CAGTCCTCAAAGAGC-AGGACGCCTTTTTCTTTAAAAG-CCACACAAGTTGGTGGCACCC
1606637 GTTCAAGTTG
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
61 2 0.02
62 102 0.97
63 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (61 bp):
CAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTAAAAGCCACACAAGTTGGTGGCACCCATG
Found at i:1606644 original size:19 final size:19
Alignment explanation
Indices: 1606620--1606660 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
1606610 AAAAGCCCAC
1606620 TCAAGTTGGTGGCACCCGT
1 TCAAGTTGGTGGCACCCGT
1606639 TCAAGTTGGTGGCACCCGT
1 TCAAGTTGGTGGCACCCGT
1606658 TCA
1 TCA
1606661 GTCCTCAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.17, C:0.27, G:0.29, T:0.27
Consensus pattern (19 bp):
TCAAGTTGGTGGCACCCGT
Found at i:1606722 original size:81 final size:81
Alignment explanation
Indices: 1606560--1606715 Score: 246
Period size: 81 Copynumber: 1.9 Consensus size: 81
1606550 AAGCTCACAT
1606560 AAGTTGATGGCACCCATTCAGTCCTCAAAGACTAGGACGCCTTTTTCTTTAAAAGCCCACTCAAG
1 AAGTTGATGGCACCCATTCAGTCCTCAAAGACTAGGACGCCTTTTTCTTTAAAAGCCCACTCAAG
1606625 TTGGTGGCACCCGTTC
66 TTGGTGGCACCCGTTC
* *
1606641 AAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGC-AGGACTGCCTTTTT-TTTAAAAGCCCACAT-
1 AAGTTGATGGCACCCATTCAGTCCTCAAAGA-CTAGGAC-GCCTTTTTCTTTAAAAGCCCAC-TC
1606703 AAGTTGGTGGCAC
63 AAGTTGGTGGCAC
1606716 TTGTTCAGTC
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
81 60 0.86
82 10 0.14
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
AAGTTGATGGCACCCATTCAGTCCTCAAAGACTAGGACGCCTTTTTCTTTAAAAGCCCACTCAAG
TTGGTGGCACCCGTTC
Found at i:1606738 original size:62 final size:63
Alignment explanation
Indices: 1606640--1607055 Score: 569
Period size: 62 Copynumber: 6.7 Consensus size: 63
1606630 GGCACCCGTT
1606640 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTT-TTTAAAAGCCCACA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTAAAAGCCCACA
* ** * *
1606702 TAAGTTGGTGGCACTTGTTCAGTCCTCAAAGAGCAGGGC-GCCTTTTTCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTAAAAGCCCACA
* * * *
1606764 CAAGTTGGTGGCACCTGTTCAGTCTTTAAAGAGCAGGGCAT--CTTTTT-TTATAAAAGCCCACA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGAC-TGCCTTTTTCTT-TAAAAGCCCACA
* * * * *
1606826 CAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAAGACAGTCTTTTTCTTTAAAAGCCCACA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTAAAAGCCCACA
* * * * *
1606889 TAAGTTGGTGGCACCCGTTCAGTCCTCAAAGTGTAGGAC-CCCTTTTTCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTAAAAGCCCACA
* *
1606951 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCA-GAATGCCTTTTTCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTAAAAGCCCACA
1607013 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGA-TGCCT
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCT
1607056 CCGTTCAGTC
Statistics
Matches: 313, Mismatches: 32, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
61 12 0.04
62 246 0.79
63 53 0.17
64 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (63 bp):
CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTAAAAGCCCACA
Found at i:1606759 original size:143 final size:143
Alignment explanation
Indices: 1606501--1606784 Score: 419
Period size: 143 Copynumber: 2.0 Consensus size: 143
1606491 TCCACACAAA
* *
1606501 TTGGTGGCACCCATGCAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTAAAGCTCACATAAGTTG
1 TTGGTGGCACCCATGCAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTAAAAGCCCACATAAGTTG
*
1606566 ATGGCACCCATTCAGTCCTCAAAGACTAGGACGCCTTTTTCTTTAAAAGCCCACTCAAGTTGGTG
66 ATGGCACCCATTCAGTCCTCAAAGACTAGGACGCCTTTTTCTTTAAAAGCCCACACAAGTTGGTG
1606631 GCACCCGTTCAAG
131 GCACCCGTTCAAG
* * *
1606644 TTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTT-TTTAAAAGCCCACATAAGTT
1 TTGGTGGCACCCATGCAGTCCTCAAAGAGCAAGAC-GCCTTTTTCTTTAAAAGCCCACATAAGTT
* *** * *
1606708 GGTGGCACTTGTTCAGTCCTCAAAGAGC-AGGGCGCCTTTTTCTTTTAAAGCCCACACAAGTTGG
65 GATGGCACCCATTCAGTCCTCAAAGA-CTAGGACGCCTTTTTCTTTAAAAGCCCACACAAGTTGG
*
1606772 TGGCACCTGTTCA
129 TGGCACCCGTTCA
1606785 GTCTTTAAAG
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
143 117 0.93
144 9 0.07
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (143 bp):
TTGGTGGCACCCATGCAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTAAAAGCCCACATAAGTTG
ATGGCACCCATTCAGTCCTCAAAGACTAGGACGCCTTTTTCTTTAAAAGCCCACACAAGTTGGTG
GCACCCGTTCAAG
Found at i:1606954 original size:187 final size:185
Alignment explanation
Indices: 1606640--1607047 Score: 613
Period size: 187 Copynumber: 2.2 Consensus size: 185
1606630 GGCACCCGTT
* *
1606640 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACTGCCTTTTTTTTAAAAGCCCACATAA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAAGACAGCCTTTTTTTTAAAAGCCCACATAA
** * *
1606705 GTTGGTGGCACTTGTTCAGTCCTCAAAGAGCAGGGCGCCTTTTTCTTTTAAAGCCCACACAAGTT
66 GTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACCCCTTTTTCTTTTAAAGCCCACACAAGTT
* * * *
1606770 GGTGGCACCTGTTCAGTCTTTAAAGAGCAGGGCAT-CTTTTT-TTATAAAAGCCCACA
131 GGTGGCACCCGTTCAGTCCTCAAAGAGCA--GAATCCTTTTTCTT-TAAAAGCCCACA
* * *
1606826 CAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAAGACAGTCTTTTTCTTTAAAAGCCCACATA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAAGACAGCCTTTTT-TTTAAAAGCCCACATA
* *
1606891 AGTTGGTGGCACCCGTTCAGTCCTCAAAGTGTAGGACCCCTTTTTCTTTTAAAGCCCACACAAGT
65 AGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACCCCTTTTTCTTTTAAAGCCCACACAAGT
*
1606956 TGGTGGCACCCGTTCAGTCCTCAAAGAGCAGAATGCCTTTTTCTTTTAAAGCCCACA
130 TGGTGGCACCCGTTCAGTCCTCAAAGAGCAGAAT-CCTTTTTCTTTAAAAGCCCACA
1607013 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCA
1 CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCA
1607048 GGATGCCTCC
Statistics
Matches: 200, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
185 3 0.01
186 43 0.22
187 152 0.76
188 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (185 bp):
CAAGTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAAGACAGCCTTTTTTTTAAAAGCCCACATAA
GTTGGTGGCACCCGTTCAGTCCTCAAAGAGCAGGACCCCTTTTTCTTTTAAAGCCCACACAAGTT
GGTGGCACCCGTTCAGTCCTCAAAGAGCAGAATCCTTTTTCTTTAAAAGCCCACA
Found at i:1607176 original size:31 final size:32
Alignment explanation
Indices: 1607089--1607200 Score: 93
Period size: 33 Copynumber: 3.5 Consensus size: 32
1607079 GCACATTTTT
* *
1607089 CTTTT-AAAGCCCACACAAGTCGATGGCACCC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * * **
1607120 CTTTTCAAAAGTCTACACAACTTGGTGGCA-TT
1 CTTTTC-AAAGCCCACACAAGTTGGTGGCACCC
* *
1607152 TTTTTCAAAGCCCACACAAGTTGGTGGCAACC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCC
* *
1607184 CTCTTCTAAAGTCCACA
1 CTTTTC-AAAGCCCACA
1607201 TCAGTCAATG
Statistics
Matches: 61, Mismatches: 16, Indels: 6
0.73 0.19 0.07
Matches are distributed among these distances:
31 25 0.41
32 9 0.15
33 27 0.44
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (32 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACCC
Found at i:1608360 original size:13 final size:13
Alignment explanation
Indices: 1608342--1608366 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1608332 GGTAATTAGT
1608342 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
1608355 GAAGAAGAAGAA
1 GAAGAAGAAGAA
1608367 TATGATGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:1614700 original size:17 final size:16
Alignment explanation
Indices: 1614658--1614700 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
1614648 AAAATTTTAA
1614658 TATATATTTTTTATAT
1 TATATATTTTTTATAT
*
1614674 TTTAATTATTTTTATATAT
1 TAT-A-TATTTTT-TATAT
1614693 TATATATT
1 TATATATT
1614701 ATATTTACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 2 0.09
17 5 0.23
18 8 0.36
19 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATATATTTTTTATAT
Found at i:1614982 original size:18 final size:19
Alignment explanation
Indices: 1614961--1615008 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
1614951 TATATAAATA
1614961 TTAATATAATAATA-ATTT
1 TTAATATAATAATATATTT
* **
1614979 TTAAAATTTTAATATATTT
1 TTAATATAATAATATATTT
1614998 TTAACTATAAT
1 TTAA-TATAAT
1615009 TTAAATTGAG
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
18 11 0.50
19 8 0.36
20 3 0.14
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TTAATATAATAATATATTT
Found at i:1615740 original size:11 final size:11
Alignment explanation
Indices: 1615679--1615740 Score: 51
Period size: 13 Copynumber: 5.6 Consensus size: 11
1615669 AAATTTTGTA
1615679 ATATAAAAAAT
1 ATATAAAAAAT
1615690 ATATGAAAATAAT
1 ATAT-AAAA-AAT
1615703 ATATTAATAAAA-
1 ATA-TAA-AAAAT
1615715 A-AT-AAAAAT
1 ATATAAAAAAT
*
1615724 CT-TAAAAAAT
1 ATATAAAAAAT
1615734 ATATAAA
1 ATATAAA
1615741 TTTGCACAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 16
0.69 0.03 0.27
Matches are distributed among these distances:
8 4 0.10
9 2 0.05
10 8 0.20
11 9 0.22
12 5 0.12
13 10 0.24
14 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:1616151 original size:270 final size:270
Alignment explanation
Indices: 1615670--1616190 Score: 1033
Period size: 270 Copynumber: 1.9 Consensus size: 270
1615660 TATTTTACAA
1615670 AATTTTGTAATATAAAAAATATATGAAAATAATATATTAATAAAAAATAAAAATCTTAAAAAATA
1 AATTTTGTAATATAAAAAATATATGAAAATAATATATTAATAAAAAATAAAAATCTTAAAAAATA
1615735 TATAAATTTGCACAGTTTATAAATTCATAAATCTTTTATTATTTTGATATATAATAAAATCTCAA
66 TATAAATTTGCACAGTTTATAAATTCATAAATCTTTTATTATTTTGATATATAATAAAATCTCAA
1615800 AAAGTGAAAGTACTAAGCTTTGTAAAATAAAAAAAAAAATCATAATTGATTAACACAAATTCATT
131 AAAGTGAAAGTACTAAGCTTTGTAAAATAAAAAAAAAAATCATAATTGATTAACACAAATTCATT
1615865 TATATAGCACTATCAGATTAAAAAAGAATTATCTTGAATTTTTGATAAAATACAAATTCATTTAA
196 TATATAGCACTATCAGATTAAAAAAGAATTATCTTGAATTTTTGATAAAATACAAATTCATTTAA
1615930 GATTGTCTTG
261 GATTGTCTTG
*
1615940 AATTTTGTAATATAAAAAATATATGCAAATAATATATTAATAAAAAATAAAAATCTTAAAAAATA
1 AATTTTGTAATATAAAAAATATATGAAAATAATATATTAATAAAAAATAAAAATCTTAAAAAATA
1616005 TATAAATTTGCACAGTTTATAAATTCATAAATCTTTTATTATTTTGATATATAATAAAATCTCAA
66 TATAAATTTGCACAGTTTATAAATTCATAAATCTTTTATTATTTTGATATATAATAAAATCTCAA
1616070 AAAGTGAAAGTACTAAGCTTTGTAAAATAAAAAAAAAAATCATAATTGATTAACACAAATTCATT
131 AAAGTGAAAGTACTAAGCTTTGTAAAATAAAAAAAAAAATCATAATTGATTAACACAAATTCATT
1616135 TATATAGCACTATCAGATTAAAAAAGAATTATCTTGAATTTTTGATAAAATACAAA
196 TATATAGCACTATCAGATTAAAAAAGAATTATCTTGAATTTTTGATAAAATACAAA
1616191 AGATTTAAGA
Statistics
Matches: 250, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
270 250 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (270 bp):
AATTTTGTAATATAAAAAATATATGAAAATAATATATTAATAAAAAATAAAAATCTTAAAAAATA
TATAAATTTGCACAGTTTATAAATTCATAAATCTTTTATTATTTTGATATATAATAAAATCTCAA
AAAGTGAAAGTACTAAGCTTTGTAAAATAAAAAAAAAAATCATAATTGATTAACACAAATTCATT
TATATAGCACTATCAGATTAAAAAAGAATTATCTTGAATTTTTGATAAAATACAAATTCATTTAA
GATTGTCTTG
Found at i:1616738 original size:19 final size:19
Alignment explanation
Indices: 1616716--1616753 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1616706 TAGTTTTTGG
1616716 AAAATAAATTTA-TTTTTTT
1 AAAATAAA-TTACTTTTTTT
*
1616735 AAAATTAATTACTTTTTTT
1 AAAATAAATTACTTTTTTT
1616754 TTTGCTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
AAAATAAATTACTTTTTTT
Found at i:1617644 original size:17 final size:17
Alignment explanation
Indices: 1617624--1617673 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
1617614 TTAAAAAATA
1617624 ATTTAATAAATTTATAT
1 ATTTAATAAATTTATAT
*
1617641 ATTT-ATCAAATTTAAAT
1 ATTTAAT-AAATTTATAT
1617658 ATTTAATAAATATTAT
1 ATTTAATAAAT-TTAT
1617674 TTTTAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 2 0.07
17 21 0.75
18 5 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATAAATTTATAT
Found at i:1617789 original size:26 final size:26
Alignment explanation
Indices: 1617753--1617808 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
1617743 TTGAAGATTT
* *
1617753 TTAATATTTATA-AATATTTAATTAAA
1 TTAATAATTATAGAAT-TTAAATTAAA
1617779 TTAATAATTATATGAATTTAAATTAAA
1 TTAATAATTATA-GAATTTAAATTAAA
1617806 TTA
1 TTA
1617809 TATTAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 11 0.42
27 12 0.46
28 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
TTAATAATTATAGAATTTAAATTAAA
Found at i:1617791 original size:22 final size:21
Alignment explanation
Indices: 1617766--1617812 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
1617756 ATATTTATAA
*
1617766 ATATTTAA-TTAAATTAATAATT
1 ATATTGAATTTAAATT-A-AATT
1617788 ATA-TGAATTTAAATTAAATT
1 ATATTGAATTTAAATTAAATT
1617808 ATATT
1 ATATT
1617813 AAATAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATATTGAATTTAAATTAAATT
Found at i:1622350 original size:34 final size:34
Alignment explanation
Indices: 1622312--1622381 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
1622302 TAGTCTAAGC
*
1622312 TCCTTTAGTGCCTTGAATTCATTATGTTATTCTT
1 TCCTTTAGTGCCTCGAATTCATTATGTTATTCTT
*
1622346 TCCTTTAGTGCCTCGAATTCATTATTTTATTCTT
1 TCCTTTAGTGCCTCGAATTCATTATGTTATTCTT
1622380 TC
1 TC
1622382 TGATACAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.17, C:0.20, G:0.10, T:0.53
Consensus pattern (34 bp):
TCCTTTAGTGCCTCGAATTCATTATGTTATTCTT
Found at i:1623332 original size:38 final size:38
Alignment explanation
Indices: 1623281--1623385 Score: 201
Period size: 38 Copynumber: 2.8 Consensus size: 38
1623271 AGATCCTTTC
1623281 TTTATCCCCATATAAAACACTTTCTCGCAAAATATAAG
1 TTTATCCCCATATAAAACACTTTCTCGCAAAATATAAG
1623319 TTTATCCCCATATAAAACACTTTCTCGCAAAATATAAG
1 TTTATCCCCATATAAAACACTTTCTCGCAAAATATAAG
*
1623357 TTTATCCCCGTATAAAACACTTTCTCGCA
1 TTTATCCCCATATAAAACACTTTCTCGCA
1623386 TGCATATTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
38 66 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (38 bp):
TTTATCCCCATATAAAACACTTTCTCGCAAAATATAAG
Found at i:1623477 original size:220 final size:221
Alignment explanation
Indices: 1623095--1623505 Score: 788
Period size: 220 Copynumber: 1.9 Consensus size: 221
1623085 TCTTCCGGAG
1623095 TAAGTTTATCCCCATATAAAAAACTTTCTCGCAAAATATAAGTTTATCCCCATATAAAACACTTT
1 TAAGTTTATCCCCATATAAAAAACTTTCTCGCAAAATATAAGTTTATCCCCATATAAAACACTTT
1623160 CTCGCATGCATATTTTGCCTTTTTAAATGCCACCTTCACCTTTGCAAAGGAAATAATTTATGCCC
66 CTCGCATGCATATTTTGCCTTTTTAAATGCCACCTTCACCTTTGCAAAGGAAATAATTTATGCCC
*
1623225 CAGCTTTCCATAAAGATAGAATCTTTTGAAAATAATTCTATATTTGAGATCCTTT-CTTTATCCC
131 CAGCTTTCCAGAAAGATAGAATCTTTTGAAAATAATTCTATATTTGAGATCCTTTCCTTTATCCC
1623289 CATATAAAACACTTTCTCGCAAAATA
196 CATATAAAACACTTTCTCGCAAAATA
* *
1623315 TAAGTTTATCCCCATATAAAACACTTTCTCGCAAAATATAAGTTTATCCCCGTATAAAACACTTT
1 TAAGTTTATCCCCATATAAAAAACTTTCTCGCAAAATATAAGTTTATCCCCATATAAAACACTTT
1623380 CTCGCATGCATATTTTGCCTTTTTAAATGCCACCTTCACCTTTGCAAAGGAAATAATTTATGCCC
66 CTCGCATGCATATTTTGCCTTTTTAAATGCCACCTTCACCTTTGCAAAGGAAATAATTTATGCCC
1623445 CAGCTTTCCAGAAAGATAGAATCTTTTGAAAATAATTCTATATTTGAGATCCTTTCCTTTA
131 CAGCTTTCCAGAAAGATAGAATCTTTTGAAAATAATTCTATATTTGAGATCCTTTCCTTTA
1623506 ACCCTTTATT
Statistics
Matches: 187, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
220 182 0.97
221 5 0.03
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (221 bp):
TAAGTTTATCCCCATATAAAAAACTTTCTCGCAAAATATAAGTTTATCCCCATATAAAACACTTT
CTCGCATGCATATTTTGCCTTTTTAAATGCCACCTTCACCTTTGCAAAGGAAATAATTTATGCCC
CAGCTTTCCAGAAAGATAGAATCTTTTGAAAATAATTCTATATTTGAGATCCTTTCCTTTATCCC
CATATAAAACACTTTCTCGCAAAATA
Found at i:1628922 original size:4 final size:4
Alignment explanation
Indices: 1628913--1628937 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1628903 TGTAAAACCT
1628913 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
1628938 ATCTTTAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Done.