Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4121247
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 5938 characters in sequence are not A, C, G, or T
File 6 of 25
Found at i:812746 original size:13 final size:13
Alignment explanation
Indices: 812728--812752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
812718 ACAAAACTTA
812728 TGTATCGATACAT
1 TGTATCGATACAT
812741 TGTATCGATACA
1 TGTATCGATACA
812753 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:813744 original size:49 final size:48
Alignment explanation
Indices: 813575--814320 Score: 724
Period size: 43 Copynumber: 15.8 Consensus size: 48
813565 ATGAGAAAAA
* * * **
813575 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTAAAGATGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATT-GGACTTAAAGA--A-G-AGG
* * *
813628 TGCCAATATGCTGATTTAAGGCCAGCAATATTGGACTT----AA-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
* *
813671 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAATG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG-AGG
* * *
813720 TGCCAATATGCTGATTCAATGCCAGCTATATTAGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG-AGG
* * *
813769 TGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTT-----ACAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
* *
813812 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-AGAGG
* * **
813861 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTACAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
* * *
813909 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG---AA-GAGG
* *
813961 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--GAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
* * *
814004 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A-GAA-GAGG
* *
814056 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--GAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
*
814099 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT----AA-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
* *
814142 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG-AGG
* * *
814191 TGCCAATATGCTGATTCAAGGCCAGCAATATGGGACTT----AA-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
* *
814234 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGA-GG
* * * *
814283 TGCTAATATACTGATTCAAGGCCAGCGATATTGGACTT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
814321 GGAAGGGTTG
Statistics
Matches: 583, Mismatches: 71, Indels: 82
0.79 0.10 0.11
Matches are distributed among these distances:
43 228 0.39
44 1 0.00
45 1 0.00
46 2 0.00
47 4 0.01
48 43 0.07
49 198 0.34
52 78 0.13
53 28 0.05
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGG
Found at i:813757 original size:92 final size:91
Alignment explanation
Indices: 813575--814320 Score: 676
Period size: 92 Copynumber: 7.9 Consensus size: 91
813565 ATGAGAAAAA
* * * **
813575 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTAAAGATGATGAAGGTGCCAATATGCT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATT-GGACTTAAAGA--A-G-AGGTGCCAATATGCT
* * *
813640 GATTTAAGGCCAGCAATATTGGACTTAAAGG
61 GATTCAAGGCCAGCTACATTGGACTTAAAGG
* *
813671 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAATGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG-AGGTGCCAATATGCTGATT
* * *
813736 CAATGCCAGCTATATTAGACTTAAAGAAGAAGG
65 CAAGGCCAGCTACATTGGACTT-----A-AAGG
* * * *
813769 TGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTT-----ACAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGGTGCCAATATGCTGATTC
813829 AAGGCCAGCTACATTGGACTTAAAGATAAAGG
66 AAGGCCAGCTACATTGGAC-T-----TAAAGG
* * ** *
813861 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTACAGGTGAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGGTGCCAATATGCTGATTC
*
813926 AAGGCTAGCTACATTGGACTTAAAGATAAAGGTGG
66 AAGGCCAGCTACATTGGAC-T-----TAAA---GG
* * *
813961 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--GAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGGTGCCAATATGCTGATTC
*
814021 AAGGCTAGCTACATTGGACTTAAAGATGAAGGTGG
66 AAGGCCAGCTACATTGGACTT----A--AA---GG
* * *
814056 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--GAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGGTGCCAATATGCTGATTC
814116 AAGGCCAGCTACATTGGACTTAAAGG
66 AAGGCCAGCTACATTGGACTTAAAGG
* *
814142 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG-AGGTGCCAATATGCTGATT
* * *
814207 CAAGGCCAGCAATATGGGACTTAAAGG
65 CAAGGCCAGCTACATTGGACTTAAAGG
* * * *
814234 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCTAATATACTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGA-GGTGCCAATATGCTGATT
* *
814299 CAAGGCCAGCGATATTGGACTT
65 CAAGGCCAGCTACATTGGACTT
814321 GGAAGGGTTG
Statistics
Matches: 582, Mismatches: 35, Indels: 70
0.85 0.05 0.10
Matches are distributed among these distances:
86 37 0.06
89 4 0.01
91 3 0.01
92 236 0.41
93 5 0.01
94 1 0.00
95 136 0.23
96 30 0.05
97 51 0.09
98 40 0.07
100 39 0.07
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (91 bp):
TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAGGTGCCAATATGCTGATTC
AAGGCCAGCTACATTGGACTTAAAGG
Found at i:814043 original size:95 final size:92
Alignment explanation
Indices: 813625--814271 Score: 702
Period size: 92 Copynumber: 7.0 Consensus size: 92
813615 AAGATGATGA
* * * * *
813625 AGGTGCCAATATGCTGATTTAAGGCCAGCAATATTGGAC-T-----TAAAGGTGCCAATGTGCTG
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
*
813684 ATTCAAGGCCAGCTACATTGGACTTAAAGAAG
66 ATTCAAGGCCAGCTATATTGGACTT---G--G
* * * * *
813716 AATGTGCCAATATGCTGATTCAATGCCAGCTATATTAGACTTAAAGA-AGAAGGTGCCAATATGC
1 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA-AAGGTGCCAATATGC
* **
813780 TGATTCAAGGCTAGCTATATTGGACTTAC
64 TGATTCAAGGCCAGCTATATTGGACTTGG
813809 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
813874 ATTCAAGGCCAGCTATATTGGACTTACAGGTG
66 ATTCAAGGCCAGCTATATTGGACTT----G-G
*
813906 AGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGGTGCCAATATG
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAA---GGTGCCAATATG
*
813971 CTGATTCAAGGCCAGCGATATTGGACTTGG
63 CTGATTCAAGGCCAGCTATATTGGACTTGG
* *
814001 AGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGGTGCCAATATG
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AA--AGGTGCCAATATG
*
814066 CTGATTCAAGGCCAGCGATATTGGACTTGG
63 CTGATTCAAGGCCAGCTATATTGGACTTGG
*
814096 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATGTGCTG
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
*
814155 ATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 ATTCAAGGCCAGCTATATTGGACTT---G--G
* * * * *
814187 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATGGGAC-T-----TAAAGGTGCCAATGTGCT
1 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
814246 GATTCAAGGCCAGCTACATTGGACTT
65 GATTCAAGGCCAGCTATATTGGACTT
814272 AAAGATGATG
Statistics
Matches: 500, Mismatches: 30, Indels: 50
0.86 0.05 0.09
Matches are distributed among these distances:
86 37 0.07
88 2 0.00
89 2 0.00
91 1 0.00
92 196 0.39
93 2 0.00
94 1 0.00
95 128 0.26
96 3 0.01
97 50 0.10
98 39 0.08
100 39 0.08
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
ATTCAAGGCCAGCTATATTGGACTTGG
Found at i:814141 original size:22 final size:22
Alignment explanation
Indices: 814116--814183 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
814106 GTGCTGATTC
814116 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
* * *
814138 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTACAT-TG--GACTTA
814159 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
814181 AAG
1 AAG
814184 ATGAAGGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCTACATTGGACTTA
Found at i:814162 original size:21 final size:21
Alignment explanation
Indices: 814096--814162 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
814086 TTGGACTTGG
814096 AGGTGCCAATGTGCTGATTCA
1 AGGTGCCAATGTGCTGATTCA
* * *
814117 AGGCCAGCTACAT-TG--GACTTAA
1 AGG--TGCCA-ATGTGCTGA-TTCA
814139 AGGTGCCAATGTGCTGATTCA
1 AGGTGCCAATGTGCTGATTCA
814160 AGG
1 AGG
814163 CCAGCTACAT
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 11 0.33
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (21 bp):
AGGTGCCAATGTGCTGATTCA
Found at i:814254 original size:21 final size:21
Alignment explanation
Indices: 814187--814254 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
814177 CTTAAAGATG
814187 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
* * *
814208 AAGG-CCAGCAATATG-GGACTTA
1 AAGGTGC--CAATATGCTGA-TTC
*
814230 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
814251 AAGG
1 AAGG
814255 CCAGCTACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
20 1 0.03
21 18 0.51
22 15 0.43
23 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:814402 original size:32 final size:32
Alignment explanation
Indices: 814326--814455 Score: 181
Period size: 33 Copynumber: 4.0 Consensus size: 32
814316 GACTTGGAAG
*
814326 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAA
1 GGTTGCCACCAACTTGTGTGGGCTTTAGAGAA
*
814358 TGGTTGCCACCAACTTGTGTGGGCTTTAGAG-G
1 -GGTTGCCACCAACTTGTGTGGGCTTTAGAGAA
814390 GGATTGCCACCAACTTGTGTGGGCTTTAGAAGAA
1 GG-TTGCCACCAACTTGTGTGGGCTTTAG-AGAA
* * *
814424 GGTTGCTACCGACTTGTGTGGGCTTTGGAGAA
1 GGTTGCCACCAACTTGTGTGGGCTTTAGAGAA
814456 AGATGCCTCG
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
31 2 0.02
32 30 0.34
33 54 0.61
34 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (32 bp):
GGTTGCCACCAACTTGTGTGGGCTTTAGAGAA
Found at i:814439 original size:65 final size:65
Alignment explanation
Indices: 814328--814449 Score: 201
Period size: 65 Copynumber: 1.9 Consensus size: 65
814318 CTTGGAAGGG
*
814328 TTGCCACCGACTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGGGGA
1 TTGCCACCAACTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGGGGA
* *
814393 TTGCCACCAACTTGTGTGGGCTTTAGAAGAA-GGTTGCTACCGACTTGTGTGGGCTTT
1 TTGCCACCAACTTGTGTGGGCTTTAG-AGAATGGTTGCCACCAACTTGTGTGGGCTTT
814450 GGAGAAAGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
65 49 0.92
66 4 0.08
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (65 bp):
TTGCCACCAACTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGGGGA
Found at i:814504 original size:34 final size:34
Alignment explanation
Indices: 814454--815038 Score: 495
Period size: 34 Copynumber: 17.9 Consensus size: 34
814444 GGCTTTGGAG
* *
814454 AAAGA-TGCCTCGGAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* **
814487 AAAGAGTGCCACAGAGTTGTGGGCTGTAAAAGGGT
1 AAAGAGTGCCACGGAGTTGTGGGCT-TAAAAGGAA
* *
814522 GATGA-TGCCACAGG-GTTGTGGGCTTTGAAAA-GAA
1 AAAGAGTGCCAC-GGAGTTGTGGGC-TT-AAAAGGAA
* *
814556 AAA-TGTGCCATAGG-GTTGTGGGCTTTAAAAGG-A
1 AAAGAGTGCCA-CGGAGTTGTGGGC-TTAAAAGGAA
814589 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
814620 ---G-GTGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
* *
814651 GAAGAGTGCCACGGAGTTGT-GGCTT-ACAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
814683 AGAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* * *
814718 AAAG-GTGCCACGGAGTTGTGGACTTAGATGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
814751 AAAGAGTGCCACGAAGTTGTGGGCTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
814782 ---G-GTGCCACGGAATTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
814812 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
814846 AAAGAGTGCCACGGAGTTGTGGGCTT------AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
814874 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
814907 AAAGAGTGCCACGGAGTTGT-GGCTT-ACAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
** * * *
814939 GGAGAGTGCCACAGAGTTATGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* * * *
814974 AAAG-GTGCAATGGAGTTGTGGAC-TAAGATGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAA-AAGGAA
* *
815007 AAAGAGTGCCACGAAGTTGTGAGCTTAAAAGG
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG
815039 GTGCCACGGA
Statistics
Matches: 447, Mismatches: 63, Indels: 83
0.75 0.11 0.14
Matches are distributed among these distances:
27 47 0.11
28 27 0.06
29 1 0.00
32 49 0.11
33 74 0.17
34 200 0.45
35 49 0.11
ACGTcount: A:0.33, C:0.12, G:0.35, T:0.21
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:814700 original size:95 final size:95
Alignment explanation
Indices: 814454--814964 Score: 344
Period size: 95 Copynumber: 5.3 Consensus size: 95
814444 GGCTTTGGAG
* * * *
814454 AAAGA-TGCCTCGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTGTAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTT-AAAGGAAAGAG-GTGCCACAGAGTTGTGGGCTTTAAAA
* *
814518 GGGTGATGATGCCACAGG-GTTGTGGGCTTTGAAAA-GAA
64 ----GA-GGTGCCAC-GGAGTTGTGGAC-TT-AAAAGGAA
* * *
814556 AAA-TGTGCCATAGG-GTTGTGGGCTTTAAAAGGAAA-AGGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAGAGTGCCA-CGGAGTTGTGGGC-TT-AAAGGAAAGAGGTGCCACAGAGTTGTGGGCTTTAAA
814618 AG-GGTGCCACGGAGTTGTGGACTTAAAAGGGAA
63 AGAGGTGCCACGGAGTTGTGGACTTAAAA-GGAA
* *
814651 GAAGAGTGCCACGGAGTTGT-GGCTTACAGGAAAGAGAGTGCCACAGAGTTGTGGGCTTTAAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAAAGAG-GTGCCACAGAGTTGTGGGCTTT-AAAA
* *
814715 GAAAAAGGTGCCACGGAGTTGTGGACTTAGATGGAA
64 G----AGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * * *
814751 AAAGAGTGCCACGAAGTTGTGGGCTT--A--AAAG-GGTGCCACGGAATTGTGGACTTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAAAGAGGTGCCACAGAGTTGTGGGCTT--TA--A
* * *
814811 AAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
62 AAGAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
814846 AAAGAGTGCCACGGAGTTGTGGGCTT--A--AAA-AGGTGCCACGGAGTTGTGGAC-TTAAAAGG
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAAAGAGGTGCCACAGAGTTGTGGGCTTTAAAA-G
*
814905 AAAAAGAGTGCCACGGAGTTGTGG-CTT-ACAGGAA
65 ----AG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
** * *
814939 GGAGAGTGCCACAGAGTTATGGGCTT
1 AAAGAGTGCCACGGAGTTGTGGGCTT
814965 TAAAAAGAAA
Statistics
Matches: 347, Mismatches: 34, Indels: 65
0.78 0.08 0.15
Matches are distributed among these distances:
90 3 0.01
92 1 0.00
93 38 0.11
94 14 0.04
95 159 0.46
96 18 0.05
97 5 0.01
98 3 0.01
99 1 0.00
100 22 0.06
101 53 0.15
102 17 0.05
103 13 0.04
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (95 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAAAGAGGTGCCACAGAGTTGTGGGCTTTAAAAGA
GGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:814816 original size:61 final size:61
Alignment explanation
Indices: 814716--815059 Score: 258
Period size: 61 Copynumber: 5.4 Consensus size: 61
814706 CTTTAAAAAG
* *
814716 AAAAAGGTGCCACGGAGTTGTGGACTTAGATGGAAAAAGAGTGCCACGAAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTT
* *
814777 AAAAGGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTT
* * * *
814838 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT------AAAAAG-GTGCCACGGAGTTGTGGA
1 -------AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGG
814896 CTT
59 CTT
* ** *
814899 AAAAGGAAAAAGAGTGCCACGGAGTTGTGG-CTTA-CAGGAAGGAGAGTGCCAC-AGAGTTATGG
1 AAAA-G-----G-GTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGA-AGTTGTGG
814961 GCTTT
58 GC-TT
* * * * *
814966 AAAAAGAAAAAGGTGCAATGGAGTTGTGGACTAAGATGGAAAAAGAGTGCCACGAAGTTGTGAGC
1 -AAAAG-----GGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGC
815031 TT
60 TT
*
815033 AAAAGGGTGCCACGGAATTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
815060 TGAGACAAAA
Statistics
Matches: 230, Mismatches: 27, Indels: 52
0.74 0.09 0.17
Matches are distributed among these distances:
54 4 0.02
55 1 0.00
60 3 0.01
61 112 0.49
62 6 0.03
65 4 0.02
66 35 0.15
67 14 0.06
68 50 0.22
69 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.20
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTT
Found at i:814946 original size:256 final size:257
Alignment explanation
Indices: 814454--815059 Score: 875
Period size: 256 Copynumber: 2.3 Consensus size: 257
814444 GGCTTTGGAG
* * * *
814454 AAAGATGCCTCGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCAC-AGAGTTGTGGGCTGTAAAA
1 AAAGGTGCCACGGAGTTGTGGACTTAGATGGAAAAAGAGTGCCACGA-AGTTGTGGGCT-TAAAA
* * * *
814518 GGGTGATGATGCCACAGG-GTTGTGGGCTTTGAAAAGAAAAATGTGCCATAGGGTTGTGGGCTTT
64 --G-G--G-TGCCAC-GGAATTGTGGACTTAGAAAAGAAAAAAGTGCCATAGGGTTGTGGGCTTT
*
814582 AAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
122 AAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
* *
814647 GGAAGAAGAGTGCCACGGAGTTGTGGCTTACAGGAAAGAGAGTGCCACAGAGTTGTGGGCTTTAA
187 GGAAAAAGAGTGCCACGGAGTTGTGGCTTACAGGAAAGAGAGTGCCACAGAGTTATGGGCTTTAA
814712 AAAGAA
252 AAAGAA
814718 AAAGGTGCCACGGAGTTGTGGACTTAGATGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAAAAGG
1 AAAGGTGCCACGGAGTTGTGGACTTAGATGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAAAAGG
* * *
814783 GTGCCACGGAATTGTGGACTTAG-AAGGAAAAAGAGTGCCA-CGGAGTTGTGGGC-TTAGAAGGA
66 GTGCCACGGAATTGTGGACTTAGAAAAGAAAAA-AGTGCCATAGG-GTTGTGGGCTTTAAAAGG-
814845 AAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAAGGTGCCACGGAGTTGTGGACTTAAAA-GGAAA
128 AAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAA
*
814908 AAGAGTGCCACGGAGTTGTGGCTTACAGGAAGGAGAGTGCCACAGAGTTATGGGCTTTAAAAAGA
192 AAGAGTGCCACGGAGTTGTGGCTTACAGGAAAGAGAGTGCCACAGAGTTATGGGCTTTAAAAAGA
814973 A
257 A
* * * *
814974 AAAGGTGCAATGGAGTTGTGGACTAAGATGGAAAAAGAGTGCCACGAAGTTGTGAGCTTAAAAGG
1 AAAGGTGCCACGGAGTTGTGGACTTAGATGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAAAAGG
815039 GTGCCACGGAATTGTGGACTT
66 GTGCCACGGAATTGTGGACTT
815060 TGAGACAAAA
Statistics
Matches: 317, Mismatches: 19, Indels: 20
0.89 0.05 0.06
Matches are distributed among these distances:
256 169 0.53
257 68 0.21
258 20 0.06
260 1 0.00
261 1 0.00
263 5 0.02
264 52 0.16
265 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.35, T:0.21
Consensus pattern (257 bp):
AAAGGTGCCACGGAGTTGTGGACTTAGATGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAAAAGG
GTGCCACGGAATTGTGGACTTAGAAAAGAAAAAAGTGCCATAGGGTTGTGGGCTTTAAAAGGAAA
AGGTGCCACGGAGTTGTGGGCTTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGA
GTGCCACGGAGTTGTGGCTTACAGGAAAGAGAGTGCCACAGAGTTATGGGCTTTAAAAAGAA
Found at i:815076 original size:32 final size:31
Alignment explanation
Indices: 815052--815351 Score: 345
Period size: 32 Copynumber: 9.5 Consensus size: 31
815042 CCACGGAATT
*
815052 GTGGACTTTGAGACAAAAGATGCCACTAAGTC
1 GTGGACTTTGAGA-AAAAGATGCCACTGAGTC
* *
815084 ATGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAAAGATGCCACTGAGTC
*
815116 GTGGACTTTAAGACAAAAGATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAAGATGCCACTGAGTC
* * *
815148 GTAGACTTTGAAGAAAAGGATTCCACTGAGTC
1 GTGGACTTTG-AGAAAAAGATGCCACTGAGTC
* **
815180 ATGGACTTTTTGACAAAAGATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAAGATGCCACTGAGTC
815212 GTGGACTTTGA-AGAAAAGAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAAG-ATGCCACTGAGTC
**
815244 GTGGACTTTGAG-AAGTGATTGCCACTGAGTC
1 GTGGACTTTGAGAAAAAGA-TGCCACTGAGTC
*
815275 GTGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAAAGATGCCACTGAGTC
**
815307 GTGGACTTTGAG-AAGTGATTGCCACTGAGTC
1 GTGGACTTTGAGAAAAAGA-TGCCACTGAGTC
*
815338 GTGGACTTTAAGAA
1 GTGGACTTTGAGAA
815352 GGTATTTGAA
Statistics
Matches: 230, Mismatches: 27, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
30 5 0.02
31 61 0.27
32 154 0.67
33 10 0.04
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (31 bp):
GTGGACTTTGAGAAAAAGATGCCACTGAGTC
Found at i:815108 original size:64 final size:64
Alignment explanation
Indices: 815033--815351 Score: 432
Period size: 64 Copynumber: 5.0 Consensus size: 64
815023 TTGTGAGCTT
* * * * * *
815033 AAAAGGGTGCCACGGAATTGTGGACTTTGAGACAAAAGATGCCACTAAGTCATGGACTTTGAAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAAGATGCCACTGAGTCGTGGACTTTGAAG
* *
815097 AAAAGGATGCCACTGAGTCGTGGACTTTAAGACAAAAGATGCCACTGAGTCGTAGACTTTGAAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * **
815161 AAAAGGATTCCACTGAGTCATGGACTTTTTGACAAAAGATGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAAGATGCCACTGAGTCGTGGACTTTGAAG
* **
815225 AAAAGAATGCCACTGAGTCGTGGACTTTGAG--AAGTGATTGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
**
815288 AAAAGGATGCCACTGAGTCGTGGACTTTGAG--AAGTGATTGCCACTGAGTCGTGGACTTT-AAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
815350 AA
1 AA
815352 GGTATTTGAA
Statistics
Matches: 233, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
62 9 0.04
63 83 0.36
64 141 0.61
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (64 bp):
AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAAGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:816600 original size:21 final size:20
Alignment explanation
Indices: 816576--816624 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
816566 GCCTTTGCAC
816576 TTTTTTTGTGTGTGTTTTTT
1 TTTTTTTGTGTGTGTTTTTT
*
816596 GTTTTGTTT-TGTTTGTTTTTT
1 -TTTT-TTTGTGTGTGTTTTTT
*
816617 TCTTTTTG
1 TTTTTTTG
816625 ACTTTTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 3 0.12
20 3 0.12
21 15 0.62
22 3 0.12
ACGTcount: A:0.00, C:0.02, G:0.18, T:0.80
Consensus pattern (20 bp):
TTTTTTTGTGTGTGTTTTTT
Found at i:816605 original size:23 final size:22
Alignment explanation
Indices: 816579--816622 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
816569 TTTGCACTTT
*
816579 TTTTGTGTGTGTTTTTTGTTTTG
1 TTTTGTGTGT-TTTTTTCTTTTG
*
816602 TTTTGTTTGTTTTTTTCTTTT
1 TTTTGTGTGTTTTTTTCTTTT
816623 TGACTTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.00, C:0.02, G:0.18, T:0.80
Consensus pattern (22 bp):
TTTTGTGTGTTTTTTTCTTTTG
Found at i:816624 original size:14 final size:14
Alignment explanation
Indices: 816576--816634 Score: 50
Period size: 14 Copynumber: 4.1 Consensus size: 14
816566 GCCTTTGCAC
*
816576 TTTTTTTG-TGTGT
1 TTTTTTTGTTTTGT
*
816589 GTTTTTTGTTTTGT
1 TTTTTTTGTTTTGT
*
816603 TTTGTTTGTTTT-T
1 TTTTTTTGTTTTGT
816616 TTCTTTTTGACTTTTGT
1 TT-TTTTTG--TTTTGT
816633 TT
1 TT
816635 GTGTGTTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
13 10 0.28
14 19 0.53
16 4 0.11
17 3 0.08
ACGTcount: A:0.02, C:0.03, G:0.17, T:0.78
Consensus pattern (14 bp):
TTTTTTTGTTTTGT
Found at i:816636 original size:25 final size:25
Alignment explanation
Indices: 816602--816655 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
816592 TTTTGTTTTG
* *
816602 TTTTGTTTGT-TTTTTTCTTTTTGAC
1 TTTTGTTTGTGTGTTTAC-TTTTGAC
816627 TTTTGTTTGTGTGTTTACTTTTGAC
1 TTTTGTTTGTGTGTTTACTTTTGAC
816652 TTTT
1 TTTT
816656 CCATAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.06, C:0.07, G:0.15, T:0.72
Consensus pattern (25 bp):
TTTTGTTTGTGTGTTTACTTTTGAC
Found at i:820195 original size:52 final size:51
Alignment explanation
Indices: 820126--820241 Score: 151
Period size: 52 Copynumber: 2.3 Consensus size: 51
820116 AAATAACGGG
* * * * * *
820126 GTTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTTGGAACTAAAATTGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGGT-ATTTTAGAAATAAAACTGGA
* *
820178 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAGCTGGG
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAACTGGA
820229 GTTGGAGTATCCC
1 GTTGGAGTATCCC
820242 TTCGAAAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 27 0.48
52 29 0.52
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAACTGGA
Found at i:820268 original size:131 final size:131
Alignment explanation
Indices: 819999--820321 Score: 366
Period size: 131 Copynumber: 2.5 Consensus size: 131
819989 ACGGGGCTAA
* * * * * *
819999 AGTATCCCCAATTATGGAAAATTGGA-GTTCTAAAAAATAAAATC-AAGGTTAGAGTATCCCCGA
1 AGTATCCCCGATTATGAAAAATT-GATGTT-TTAGAAATAAAATCGGA-GTTGGAGTATCCCCGA
* * * * *
820062 TTGTGAAAAGATTGATGCTTTAAAAATAAGGCTAGGGTTGGAGTATCCCCGTGAAAATAACGGGG
63 TTATGAAAAGATTGATACTTTAAAAATAAAGCTAGGGTTGGAGTATCCCCGTGAAAATAACGAGA
820127 TTGG
128 TTGG
* * * * * *
820131 AGTATCCCCGATTGTGAGAAATTGGTGTTTTTGGAACTAAAATTGGAGTTGGAGTATCCCCGATT
1 AGTATCCCCGATTATGAAAAATTGATG-TTTTAGAAATAAAATCGGAGTTGGAGTATCCCCGATT
* * * * *
820196 ATGAAAA-ATTGGTATTTTAGAAATAAAGCTGGGGTTGGAGTAT-CCCTTCGAAAATAACGAGAT
65 ATGAAAAGATTGATACTTTAAAAATAAAGCTAGGGTTGGAGTATCCCCGT-GAAAATAACGAGAT
820259 TGG
129 TGG
*
820262 AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGTTGGAGTGTCCCC
1 AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGTTGGAGTATCCCC
820322 TCGGAAATAA
Statistics
Matches: 158, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
130 33 0.21
131 70 0.44
132 52 0.33
133 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (131 bp):
AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCGATTA
TGAAAAGATTGATACTTTAAAAATAAAGCTAGGGTTGGAGTATCCCCGTGAAAATAACGAGATTG
G
Found at i:820272 original size:79 final size:79
Alignment explanation
Indices: 820179--820400 Score: 250
Period size: 79 Copynumber: 2.8 Consensus size: 79
820169 AAAATTGGAG
* * * *
820179 TTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAAT-AAAGCTGGGGTTGGAGTATCCCT
1 TTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATC-GGAGTTGGAGTATCCCC
820243 TCGAAAATAACGAGA
65 TCGAAAATAACGAGA
* *
820258 TTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGTTGGAGTGTCCCCT
1 TTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCGGAGTTGGAGTATCCCCT
* * * *
820323 CGGAAATAATGGGG
66 CGAAAATAACGAGA
* * * * * * * *
820337 TTGGAGTATCCTCGATTGTGAAAAGTCGGTGTTTT-GAAAATAAAATCCGAGTTAGAGTATCCCC
1 TTGGAGTATCCCCGATTATGAAAAATTGATATTTTAG-AAATAAAATCGGAGTTGGAGTATCCCC
820401 GATTATAGAA
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.01
79 118 0.96
80 4 0.03
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (79 bp):
TTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCGGAGTTGGAGTATCCCCT
CGAAAATAACGAGA
Found at i:820404 original size:51 final size:51
Alignment explanation
Indices: 820336--820512 Score: 227
Period size: 51 Copynumber: 3.5 Consensus size: 51
820326 AAATAATGGG
* *
820336 GTTGGAGTATCCTCGATTGT-GAAAAGTCGGTGTTTTGAAAATAAAATCCGA
1 GTTGGAGTATCCCCGATTGTAGAAAA-TTGGTGTTTTGAAAATAAAATCCGA
* * *
820387 GTTAGAGTATCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAA-CCGGG
1 GTTGGAGTATCCCCGATTGTAGAAAATTGGTGTTTTGAAAATAAAATCC-GA
* * * *
820438 GTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTCGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAGAAAATTGGTGTTTTGAAAATAAAATCCGA
820489 GTTGGAGTAT-CCCGATTGT-GAAAA
1 GTTGGAGTATCCCCGATTGTAGAAAA
820513 ATTGAGAAAC
Statistics
Matches: 111, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 5 0.05
50 11 0.10
51 89 0.80
52 6 0.05
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTAGAAAATTGGTGTTTTGAAAATAAAATCCGA
Found at i:822891 original size:21 final size:21
Alignment explanation
Indices: 822867--822908 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
822857 GTATTAATAC
822867 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
*
822888 AATGTATTGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
822909 GGTAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:823049 original size:21 final size:20
Alignment explanation
Indices: 823023--823061 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
823013 GTTGGGACCT
823023 TGTATCGATACATTCTGGAAA
1 TGTATCGATACATT-TGGAAA
823044 TGTATCGATACATTTGGA
1 TGTATCGATACATTTGGA
823062 TAAAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTGGAAA
Found at i:827627 original size:13 final size:13
Alignment explanation
Indices: 827609--827635 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
827599 ACATTATGCT
827609 TTGTATCGATACA
1 TTGTATCGATACA
827622 TTGTATCGATACA
1 TTGTATCGATACA
827635 T
1 T
827636 GGTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:827644 original size:19 final size:19
Alignment explanation
Indices: 827619--827675 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
827609 TTGTATCGAT
*
827619 ACATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
* *
827638 TCATTGTATCGATACATAC
1 ACATTGTATCGATACATGC
827657 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
827676 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:828596 original size:50 final size:50
Alignment explanation
Indices: 828541--828653 Score: 145
Period size: 50 Copynumber: 2.3 Consensus size: 50
828531 TATTTAAAGG
* * **
828541 AAATTTAGTTTTGATTGTGCTCATTATTCATTAACAAGTGCACTTTTAAA
1 AAATTTGGTTTTGATTATGCTCATTATTCACGAACAAGTGCACTTTTAAA
* * * *
828591 AAATTTGGTTTGGGTTATGCTTATTATTCACGAACAAGTGCACTTTTAAG
1 AAATTTGGTTTTGATTATGCTCATTATTCACGAACAAGTGCACTTTTAAA
*
828641 ATATTTGGTTTTG
1 AAATTTGGTTTTG
828654 GTCTTGTCTC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (50 bp):
AAATTTGGTTTTGATTATGCTCATTATTCACGAACAAGTGCACTTTTAAA
Found at i:828677 original size:51 final size:50
Alignment explanation
Indices: 828566--828678 Score: 131
Period size: 50 Copynumber: 2.2 Consensus size: 50
828556 TGTGCTCATT
* *
828566 ATTCATTAACAAGTGCACTTTTAAAAAATTTGGTTTGGGTTATGCTTATT
1 ATTCATGAACAAGTGCACTTTTAAAAAATTTGGTTTGGGTTATGCTTATC
* * * *
828616 ATTCACGAACAAGTGCACTTTTAAGATATTTGGTTTTGGTCT-TGTCTCT-TC
1 ATTCATGAACAAGTGCACTTTTAAAAAATTTGGTTTGGGT-TATG-CT-TATC
828667 ATTCATGAACAA
1 ATTCATGAACAA
828679 CTTTTAATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
50 37 0.70
51 15 0.28
52 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (50 bp):
ATTCATGAACAAGTGCACTTTTAAAAAATTTGGTTTGGGTTATGCTTATC
Found at i:830856 original size:9 final size:9
Alignment explanation
Indices: 830842--830897 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
830832 TAGCAAGTGG
830842 GAAAAAAGA
1 GAAAAAAGA
830851 GAAAAAA-A
1 GAAAAAAGA
830859 G---AAAGA
1 GAAAAAAGA
830865 -AAAAAAGA
1 GAAAAAAGA
*
830873 AAAAAAAGA
1 GAAAAAAGA
* *
830882 GAGAAAATA
1 GAAAAAAGA
830891 GAAAAAA
1 GAAAAAA
830898 CAAGTTAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
5 3 0.08
6 1 0.03
8 7 0.18
9 27 0.71
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (9 bp):
GAAAAAAGA
Found at i:830865 original size:12 final size:12
Alignment explanation
Indices: 830850--830879 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
830840 GGGAAAAAAG
830850 AGAAAAAAAGAA
1 AGAAAAAAAGAA
830862 AGAAAAAAAGAA
1 AGAAAAAAAGAA
830874 A-AAAAA
1 AGAAAAA
830880 GAGAGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAGAA
Found at i:830873 original size:20 final size:19
Alignment explanation
Indices: 830842--830897 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
830832 TAGCAAGTGG
830842 GAAAAAAGAGAAAAAAAGAAA
1 GAAAAAA-AGAAAAAAA-AAA
*
830863 GAAAAAAAGAAAAAAAAGA
1 GAAAAAAAGAAAAAAAAAA
*
830882 GAGAAAATAGAAAAAA
1 GA-AAAAAAGAAAAAA
830898 CAAGTTAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 4 0.12
20 21 0.66
21 7 0.22
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (19 bp):
GAAAAAAAGAAAAAAAAAA
Found at i:830888 original size:12 final size:11
Alignment explanation
Indices: 830843--830897 Score: 55
Period size: 10 Copynumber: 5.3 Consensus size: 11
830833 AGCAAGTGGG
830843 AAAAAAGAG-A
1 AAAAAAGAGAA
830853 AAAAAAGA-AA
1 AAAAAAGAGAA
830863 GAAAAAA-AGAA
1 -AAAAAAGAGAA
*
830874 AAAAAAGAGAG
1 AAAAAAGAGAA
*
830885 AAAATAGA-AA
1 AAAAAAGAGAA
830895 AAA
1 AAA
830898 CAAGTTAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 20 0.53
11 18 0.47
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (11 bp):
AAAAAAGAGAA
Found at i:832236 original size:182 final size:182
Alignment explanation
Indices: 831635--832284 Score: 869
Period size: 181 Copynumber: 3.6 Consensus size: 182
831625 TATATTTTTT
*
831635 TATTATTCTTATGGTTGTCTGTATGGGTATAGAAATATTTAAAACTTTTCGTATCTTTTCGGTTT
1 TATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAACTTTTCGTATCTTTTCGGTTT
* * * *
831700 TCCTTCAAGGTATGAAATGAAAATTTTGAAAATAAAAAATTATAAAATATATAAAATAATAAATA
66 TCCTTTAAGGTACGAAATGAAAATTTTGAAAATAAAAAATTATAAAGTAAATAAAATAATAAATA
* *
831765 AATATTATTTTATCACTAAATAAAAATCATTACCTTAATTTCTCAAGATTTC
131 AATATTATTTTATCACTAAATAAAAATCATTATCTTAATTTTTCAAGATTTC
* * * *
831817 TATTATTCTTATTGTTGTCTATAAGAGTCTAGAAATATTT-AAACTTTTCGTATCTTTTCGGTTT
1 TATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAACTTTTCGTATCTTTTCGGTTT
* *
831881 TCCTTTAAGGTACGAAATGAAAATTTTGAAACTAAAAAATTGTAAAAG-AAATAAAATAATAAAT
66 TCCTTTAAGGTACGAAATGAAAATTTTGAAAATAAAAAATTAT-AAAGTAAATAAAATAATAAAT
831945 AAATATT-TTTTATCACTAAATAAAAATCATTATCTTAATTTTTCAAGATTTC
130 AAATATTATTTTATCACTAAATAAAAATCATTATCTTAATTTTTCAAGATTTC
* * **
831997 TATTATTCTTATGGTTGTCTGTAAAGGTATAGAAATATTTAAAATTTTTCGTATCTTTTCATTTT
1 TATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAACTTTTCGTATCTTTTCGGTTT
* * * * * *
832062 TCTTTTAAAGTACGAAAGGAAATTTTTGAAAATAAAAAATTATAAGGTAAATAAAATAGTAAATA
66 TCCTTTAAGGTACGAAATGAAAATTTTGAAAATAAAAAATTATAAAGTAAATAAAATAATAAATA
* * **
832127 AATATTATTTTATCACTAAATAAAAATTATTATTTTAATTTTTTGAGATTTC
131 AATATTATTTTATCACTAAATAAAAATCATTATCTTAATTTTTCAAGATTTC
* * * * * * * * ** *
832179 TAATATTCTTATAGTTTTTTGTAGGGGTATAGAAATCTTCAAAACTTTTCATATCTTTTTAGTTC
1 TATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAACTTTTCGTATCTTTTCGGTTT
* * * *
832244 T-CTATAGAGGTATGAAACGAAAA-TTTGAAAATTAAAAATTA
66 TCCTTTA-AGGTACGAAATGAAAATTTTGAAAATAAAAAATTA
832285 AATAAAAATT
Statistics
Matches: 410, Mismatches: 53, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
180 81 0.20
181 185 0.45
182 144 0.35
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (182 bp):
TATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAACTTTTCGTATCTTTTCGGTTT
TCCTTTAAGGTACGAAATGAAAATTTTGAAAATAAAAAATTATAAAGTAAATAAAATAATAAATA
AATATTATTTTATCACTAAATAAAAATCATTATCTTAATTTTTCAAGATTTC
Found at i:836001 original size:10 final size:10
Alignment explanation
Indices: 835986--836016 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
835976 AGAAGGAGGA
835986 AAAAAGAAAG
1 AAAAAGAAAG
835996 AAAAAGAAAG
1 AAAAAGAAAG
836006 AAAAAGAAAG
1 AAAAAGAAAG
836016 A
1 A
836017 GAGAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:836005 original size:14 final size:14
Alignment explanation
Indices: 835984--836029 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
835974 AAAGAAGGAG
835984 GAAA-AAAGAAAGAA
1 GAAAGAAAGAAA-AA
835998 -AAAGAAAGAAAAA
1 GAAAGAAAGAAAAA
*
836011 GAAAGAGAGAAAATA
1 GAAAGAAAGAAAA-A
836026 GAAA
1 GAAA
836030 AAACAAGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.18
14 18 0.64
15 5 0.18
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (14 bp):
GAAAGAAAGAAAAA
Found at i:837151 original size:161 final size:164
Alignment explanation
Indices: 836832--837515 Score: 701
Period size: 183 Copynumber: 4.0 Consensus size: 164
836822 GAGATATTCA
* * * *
836832 AAACTTTTCGTATCTTTTTAGTTTTCCTTTAAGGTATGAAATGAAATTTTTAAAAATAAAAAAAT
1 AAACTTTTCTTATCTTTTTGGTTTTCCTTTAAGGTATGAAATGAAATTTTCAAAACT-AAAAAAT
* * *
836897 TATAAAATATATAAAATAATAAATAAAATATTATTTTATCACTAAATAAAAATCATTATTTTAAT
65 TATAAAATAAATAAAATAATAAAT-AAATATTATTTTATCACTAAATAAAAATCATTATCTTAGT
** *
836962 TACTCAAGATTTCTATTATTCTTATGGTTGTC-G-T
129 TTTTCAAGATTTTTATTATTCTTATGGTTGTCGGAT
*
836996 -AACTTTTCTTATCTTTTTGGTTTTCCTTTAAGGTATGAAATGAAAGTTTCAAAACTAAAAAATT
1 AAACTTTTCTTATCTTTTTGGTTTTCCTTTAAGGTATGAAATGAAATTTTCAAAACTAAAAAATT
*
837060 ATAAAATAAATAAAATAATAAATAAATATTATTTTATCACTAGATAAAAATCATTATCTTAGTTT
66 ATAAAATAAATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTT
* *
837125 TTCAAGATTTTTATTGTTTTTATGGTTGTCTGTAAGGGTAT
131 TTCAAGATTTTTATTATTCTTATGGTTGTC------GG-AT
* * *
837166 AGAAATATTTAAAACTTTTGGTATCTTTTCGGTTTTCCTTTTAAGGTACGAAATGAAATTTTCAA
1 A-AACT-TTT----C---T--TATCTTTTTGGTTTTCC-TTTAAGGTATGAAATGAAATTTTCAA
837231 AACTAAAAAATTATAAAATAAATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCA
54 AACTAAAAAATTATAAAATAAATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCA
837296 TTATCTTAGTTTTTCAAGATTTTTATTATTCTTATGGTTGTCCATAAGGGTAT
119 TTATCTTAGTTTTTCAAGATTTTTATTATTCTTATGGTTGT-C-----GG-AT
* * * * * *
837349 AGAAATATTTAAAATTTTTAGTATCTTTTCGGTTTTCCTTTAGGGTACGAAATGAAATTTTGAAA
1 ---AA-A-CT----TTTCT--TATCTTTTTGGTTTTCCTTTAAGGTATGAAATGAAATTTTCAAA
* * * * *
837414 A-TAAAAATTTATACAATAAATAAAATAATAAATAAATATTATTTTATTACTAAATAAAAGTTAT
55 ACTAAAAAATTATAAAATAAATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCAT
* * * *
837478 TATCTTAATTTTTTAAGATTTCTAATATTCTTATGGTT
120 TATCTTAGTTTTTCAAGATTTTTATTATTCTTATGGTT
837516 TTTTGTAGGG
Statistics
Matches: 453, Mismatches: 36, Indels: 45
0.85 0.07 0.08
Matches are distributed among these distances:
161 64 0.14
162 30 0.07
163 51 0.11
168 1 0.00
170 1 0.00
172 3 0.01
173 3 0.01
177 1 0.00
180 1 0.00
181 92 0.20
182 42 0.09
183 155 0.34
184 1 0.00
185 1 0.00
186 2 0.00
187 1 0.00
190 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (164 bp):
AAACTTTTCTTATCTTTTTGGTTTTCCTTTAAGGTATGAAATGAAATTTTCAAAACTAAAAAATT
ATAAAATAAATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTT
TTCAAGATTTTTATTATTCTTATGGTTGTCGGAT
Found at i:837509 original size:181 final size:182
Alignment explanation
Indices: 837005--837559 Score: 842
Period size: 183 Copynumber: 3.0 Consensus size: 182
836995 TAACTTTTCT
* * *
837005 TATCTTTTTGGTTTTCCTTTAAGGTATGAAATGAAAGTTTCAAAACTAAAAAATTATAAAATAAA
1 TATCTTTTCGGTTTTCCTTTAAGGTACGAAATGAAATTTTCAAAACTAAAAAATTATAAAATAAA
*
837070 TAAAATAATAAATAAATATTATTTTATCACTAGATAAAAATCATTATCTTAGTTTTTCAAGATTT
66 TAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTTTTCAAGATTT
* * * *
837135 TTATTGTTTTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAACTTTTGG
131 TTATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAATTTTTAG
837187 TATCTTTTCGGTTTTCCTTTTAAGGTACGAAATGAAATTTTCAAAACTAAAAAATTATAAAATAA
1 TATCTTTTCGGTTTTCC-TTTAAGGTACGAAATGAAATTTTCAAAACTAAAAAATTATAAAATAA
837252 ATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTTTTCAAGATT
65 ATAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTTTTCAAGATT
**
837317 TTTATTATTCTTATGGTTGTCCATAAGGGTATAGAAATATTTAAAATTTTTAG
130 TTTATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAATTTTTAG
* * * *
837370 TATCTTTTCGGTTTTCCTTTAGGGTACGAAATGAAATTTTGAAAA-TAAAAATTTATACAATAAA
1 TATCTTTTCGGTTTTCCTTTAAGGTACGAAATGAAATTTTCAAAACTAAAAAATTATAAAATAAA
* * * * *
837434 TAAAATAATAAATAAATATTATTTTATTACTAAATAAAAGTTATTATCTTAATTTTTTAAGATTT
66 TAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTTTTCAAGATTT
* * * * * * * *
837499 CTAATATTCTTATGGTTTTTTGTAGGGGTATAGAAATCTTCAAAATTTTTCG
131 TTATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAATTTTTAG
*
837551 TACCTTTTC
1 TATCTTTTC
837560 AGTTCTCTAT
Statistics
Matches: 342, Mismatches: 30, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
181 127 0.37
182 42 0.12
183 173 0.51
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (182 bp):
TATCTTTTCGGTTTTCCTTTAAGGTACGAAATGAAATTTTCAAAACTAAAAAATTATAAAATAAA
TAAAATAATAAATAAATATTATTTTATCACTAAATAAAAATCATTATCTTAGTTTTTCAAGATTT
TTATTATTCTTATGGTTGTCTGTAAGGGTATAGAAATATTTAAAATTTTTAG
Found at i:840264 original size:19 final size:19
Alignment explanation
Indices: 840240--840277 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
840230 GTATTGAATA
840240 TGAAAACAAGTGGTCAGGT
1 TGAAAACAAGTGGTCAGGT
*
840259 TGAAAACAAGTGGTTAGGT
1 TGAAAACAAGTGGTCAGGT
840278 ATTCTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.32, T:0.24
Consensus pattern (19 bp):
TGAAAACAAGTGGTCAGGT
Found at i:840614 original size:2 final size:2
Alignment explanation
Indices: 840607--840637 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
840597 ATTGATTAAT
840607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
840638 TCAAGCTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:843007 original size:163 final size:164
Alignment explanation
Indices: 842763--843117 Score: 391
Period size: 163 Copynumber: 2.2 Consensus size: 164
842753 ATTCTCATTT
* * *
842763 GTTTATAAATTTTAAAATTTATC-AATATTATTATTCAACTACATTTAAATCTTTTTTCGAAATC
1 GTTTATAATTTTTAAAATTTATCAAATATTATCATTCAACTACATTTAAATCTTTTTTCAAAATC
* ** *
842827 CCTTTTATTTCATGAATTTTGCATTTTTTCTTAAAA-TCTCTTAGTTTTCAAAATACGGAGTTTT
66 CCTTTTATTTCATGAATTTTGCATATTTTCTTAAAATTC-CTTAGTTTTCAAAATACAAAGCTTT
* ** *
842891 TTGCTCCATAAATATTTTTAAGGGGA-TTTTCTTG
130 TTACTCCATAAATATTTGCAAGGGCATTTTTCTTG
* * *
842925 GTTTCA-AATTTTTAAAATTCATCAAATATTATCATTTAATTCACA-TTAAATCATTTTTT-AAA
1 GTTT-ATAATTTTTAAAATTTATCAAATATTATCATTCAACT-ACATTTAAATC-TTTTTTCAAA
* * ** * * *
842987 ATTTCC-TTTATTTTATGAATTTTTTATATTTTCTTGAAATTCCTTTGTTTTCGAAATACAAAGC
63 A-TCCCTTTTATTTCATGAATTTTGCATATTTTCTTAAAATTCCTTAGTTTTCAAAATACAAAGC
* * *
843051 TTTTTATTCCGTAAATATTTGCGAGGGCATTTTTCTTG
127 TTTTTACTCCATAAATATTTGCAAGGGCATTTTTCTTG
*
843089 GTTTATAATTTTTAAAATTTTTCAAATAT
1 GTTTATAATTTTTAAAATTTATCAAATAT
843118 CATTATTTGA
Statistics
Matches: 159, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
162 19 0.12
163 93 0.58
164 47 0.30
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (164 bp):
GTTTATAATTTTTAAAATTTATCAAATATTATCATTCAACTACATTTAAATCTTTTTTCAAAATC
CCTTTTATTTCATGAATTTTGCATATTTTCTTAAAATTCCTTAGTTTTCAAAATACAAAGCTTTT
TACTCCATAAATATTTGCAAGGGCATTTTTCTTG
Found at i:843305 original size:19 final size:19
Alignment explanation
Indices: 843283--843325 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
843273 ATTCCTATTA
843283 AATTAGTTTGA-GAAATTTT
1 AATTA-TTTGATGAAATTTT
*
843302 AATTTATTTTATGAAATTTT
1 AA-TTATTTGATGAAATTTT
843322 AATT
1 AATT
843326 TTTTCATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.53
Consensus pattern (19 bp):
AATTATTTGATGAAATTTT
Found at i:843698 original size:32 final size:34
Alignment explanation
Indices: 843644--843708 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 34
843634 TAAAAAGTAA
*
843644 AAAAAAATGAAAAAAAGCCATGAAAAAATAAAAT
1 AAAAAAATGAAAAAAAGCCATGAAAAAAGAAAAT
* * *
843678 AAAAAAATG-GAAAAA-TCATGATAAAAGAAAA
1 AAAAAAATGAAAAAAAGCCATGAAAAAAGAAAA
843709 ATATACTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 13 0.48
33 5 0.19
34 9 0.33
ACGTcount: A:0.72, C:0.05, G:0.11, T:0.12
Consensus pattern (34 bp):
AAAAAAATGAAAAAAAGCCATGAAAAAAGAAAAT
Found at i:844689 original size:19 final size:19
Alignment explanation
Indices: 844664--844720 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
844654 TTGTATTGAT
*
844664 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
844683 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
*
844702 ACAATTATATCGATACATG
1 AC-ATTGTATCGATACATG
844721 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:844781 original size:20 final size:20
Alignment explanation
Indices: 844752--844802 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
844742 CCACTGTTTA
*
844752 TATCGATACATGGT-ACATTG
1 TATCGATACATGATGA-ATTG
*
844772 TATTGATACATGATGAATTG
1 TATCGATACATGATGAATTG
844792 TATCGATACAT
1 TATCGATACAT
844803 TGCTTCTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (20 bp):
TATCGATACATGATGAATTG
Found at i:850466 original size:19 final size:20
Alignment explanation
Indices: 850434--850471 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
850424 CTTCATTAGA
850434 GATCGCACCTCCTAGGTCGT
1 GATCGCACCTCCTAGGTCGT
850454 GATCGCA-CTCCTAGGTCG
1 GATCGCACCTCCTAGGTCG
850472 CAACCGAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (20 bp):
GATCGCACCTCCTAGGTCGT
Found at i:856231 original size:52 final size:52
Alignment explanation
Indices: 856153--856280 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
856143 CGAAATATGA
*
856153 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
856205 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
856257 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
856281 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:856307 original size:13 final size:13
Alignment explanation
Indices: 856289--856313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
856279 CAAAGATCAG
856289 TGTATCGATACAA
1 TGTATCGATACAA
856302 TGTATCGATACA
1 TGTATCGATACA
856314 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:856393 original size:13 final size:13
Alignment explanation
Indices: 856375--856399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
856365 ACAAAAAAAA
856375 TGTATCGATACAT
1 TGTATCGATACAT
856388 TGTATCGATACA
1 TGTATCGATACA
856400 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:857336 original size:67 final size:68
Alignment explanation
Indices: 857212--857338 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
857202 ATTGGGTTTT
* * *
857212 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
857277 AGA
66 AGA
* * * * *
857280 AAAG-TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTGAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
857339 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:857372 original size:122 final size:124
Alignment explanation
Indices: 857234--857562 Score: 398
Period size: 128 Copynumber: 2.6 Consensus size: 124
857224 GGTGCCAATA
* * * *
857234 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAA-AAG-TGA-TAAAGATGC
1 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGACAATAAGCTGATTAAAG--GC
* *
857296 CA-ATATGTTG-ATTCATGGCCAACGATATTGGGCTTGAAGATGAGAAAAAGGATGTCAACG
64 CAGATAT-TGGAATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
* * *
857356 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGACAATAAGCTGATTAAAGGCCA
857421 GCGATATTGGACTATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
66 --GATATTGGA--ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
* * * *
857484 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT-GAAGA--TGACAATAAGCTGATTAAAGG
857549 CCAGTTATATTGGA
63 CCAG--ATATTGGA
857563 CTTAAAGGTG
Statistics
Matches: 183, Mismatches: 10, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
122 42 0.23
123 6 0.03
124 3 0.02
125 6 0.03
126 4 0.02
128 85 0.46
129 5 0.03
131 32 0.17
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (124 bp):
TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGACAATAAGCTGATTAAAGGCCA
GATATTGGAATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
Found at i:857464 original size:128 final size:130
Alignment explanation
Indices: 857306--857564 Score: 459
Period size: 128 Copynumber: 2.0 Consensus size: 130
857296 CAATATGTTG
*
857306 ATTCATGGCCAACGATATTGGGCTTGAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
1 ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
*
857371 AGCTACATTGAACTTAAAGAT-GAAGA-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
66 AGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
857434 ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
1 ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
**
857499 AGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGTTATATTGGAC
66 AGCTACATTGAACTTAAAGATGGAAAA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
857564 T
130 T
857565 TAAAGGTGCC
Statistics
Matches: 124, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
128 85 0.69
129 4 0.03
131 35 0.28
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (130 bp):
ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
AGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
Found at i:857623 original size:49 final size:49
Alignment explanation
Indices: 857484--857989 Score: 607
Period size: 49 Copynumber: 10.6 Consensus size: 49
857474 GATGTCAACG
* *
857484 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
* * *
857536 TGCTGATTCAAGGCCAGTTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
857579 TGTTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
857628 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * * *
857677 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
857726 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
857775 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
857818 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * * *
857867 TGCTGATTCAGGGCCAGCTATATTGGGCTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
857910 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
857959 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
857990 GAAGGGTTGC
Statistics
Matches: 387, Mismatches: 49, Indels: 39
0.81 0.10 0.08
Matches are distributed among these distances:
43 112 0.29
45 2 0.01
47 2 0.01
48 1 0.00
49 243 0.63
52 27 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
Found at i:857654 original size:92 final size:97
Alignment explanation
Indices: 857484--857994 Score: 678
Period size: 92 Copynumber: 5.4 Consensus size: 97
857474 GATGTCAACG
* * * * *
857484 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT-G--AAGGTGCCAATGTGCTGATTCAAGG
* * *
857549 CCAGTTATATTGGACTT-AA-A-G-G-TGCCAATG
63 CCAGCTACATTGGACTTAAAGATGAGATGCCAATA
* * *
857579 TGTTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
857644 GCTACATTGGACTTAAAGATGATGATGCCAATA
66 GCTACATTGGACTTAAAGATGA-GATGCCAATA
* *
857677 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
857742 GCTACATTGGACTTAAAGATGAAGATGCCAATA
66 GCTACATTGGACTTAAAGATG-AGATGCCAATA
*
857775 TGCTGATTCAAGGCCAGCGATATTGGACTT--A----AAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
857834 GCTACATTGGACTTAAAGATGAAGATGCCAATA
66 GCTACATTGGACTTAAAGATG-AGATGCCAATA
* *
857867 TGCTGATTCAGGGCCAGCTATATTGGGCTT--A----AAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
857926 GCTACATTGGACTTAAAGATGAAGATGCCAATA
66 GCTACATTGGACTTAAAGATG-AGATGCCAATA
*
857959 TGCTGATTCAAGGCCAGCTATATTGGGCTTAGAAGG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGG
857995 GTTGCCACCG
Statistics
Matches: 387, Mismatches: 17, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
92 215 0.56
93 2 0.01
94 2 0.01
95 35 0.09
96 1 0.00
97 1 0.00
98 130 0.34
99 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (97 bp):
TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
GCTACATTGGACTTAAAGATGAGATGCCAATA
Found at i:857826 original size:141 final size:145
Alignment explanation
Indices: 857483--857994 Score: 651
Period size: 141 Copynumber: 3.6 Consensus size: 145
857473 GGATGTCAAC
* *
857483 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AGA--TGCCAATATGCTGATTCAAG
* *
857548 GCCAGTTATATTGGACTT--A----AAGGTGCCAATGTGTTGATTCAAGGCCAGCTACATTGGAC
62 GCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
*
857607 TTAAAGGTGAAGGTGCCAAT
127 TTAAAGATGAA-GTGCCAAT
*
857627 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGA-GATGCCAATATGCTGATTCAAGGCC
* *
857692 AGCGATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
65 AGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
857757 AAGATGAAGATGCCAAT
130 AAGATGAAG-TGCCAAT
* * * *
857774 ATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-G-TGCCAATGTGCTGATTCAAGGCCA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGATGCCAATATGCTGATTCAAGGCCA
* * * * * * *
857834 GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAGGGCCAGCTATATTGGGCTT-A
66 GCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
857898 A-A-G--GTGCCAAT
131 AGATGAAGTGCCAAT
857909 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGATGCCAATATGCTGATTCAAGGCC
*
857974 AGCTATATTGGGCTTAGAAGG
65 AGCTATATTGGACTTA-AAGG
857995 GTTGCCACCG
Statistics
Matches: 324, Mismatches: 29, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
135 35 0.11
136 3 0.01
137 1 0.00
138 2 0.01
139 1 0.00
140 3 0.01
141 149 0.46
142 5 0.02
143 3 0.01
144 36 0.11
145 1 0.00
146 3 0.01
147 82 0.25
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (145 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGATGCCAATATGCTGATTCAAGGCCA
GCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
AGATGAAGTGCCAAT
Found at i:858033 original size:33 final size:35
Alignment explanation
Indices: 857989--858058 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
857979 TATTGGGCTT
857989 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
858023 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
858057 AG
1 AG
858059 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:858101 original size:34 final size:33
Alignment explanation
Indices: 858063--858599 Score: 572
Period size: 34 Copynumber: 15.8 Consensus size: 33
858053 AGGAAGGGAG
* *
858063 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
*
858097 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAG--GAA
* * *
858134 AAAGGTGCCACGGAGTTATGGACTTAAAGATGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
* *
858168 AAAAGTGCCACGGAGTTATGGGCTTAAAAGG--
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
858199 --A--TGCCACGGAGTTGTGGGCTTAGAAGGAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGG-AA
858229 AGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 A-AAGGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
858266 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
858301 AAAGTGTGCCACAGAGTTGTGGGCTTCAAAA-GAA
1 AAAG-GTGCCACGGAGTTGTGGGCTT-AAAAGGAA
858335 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
858371 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
858406 AAAGTGTGCCACAGAGTTGTGGGCTTTAAACA-GAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAA-AGGAA
*
858441 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
858475 AAAGGTGCCACGGAGTTGTGGACTTAAAGATGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
*
858509 AAAAGTGCCACGGAGTTGTGGGCTTTGAAAA-GAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* *
858543 GAAGGTGCCACGGAGTTGTGGGCTTTAAAGG-A
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
858575 AAAGGTGCCACGAAGCTGTGGGCTT
1 AAAGGTGCCACGGAGTTGTGGGCTT
858600 TGAAGAAAAA
Statistics
Matches: 443, Mismatches: 32, Indels: 58
0.83 0.06 0.11
Matches are distributed among these distances:
27 24 0.05
29 1 0.00
32 26 0.06
33 30 0.07
34 145 0.33
35 111 0.25
36 48 0.11
37 56 0.13
38 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:858194 original size:105 final size:102
Alignment explanation
Indices: 858043--858599 Score: 633
Period size: 105 Copynumber: 5.4 Consensus size: 102
858033 CACCGACTTG
* * * *
858043 TGTGGGCTTTAGGAAGGG-AGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTA-AAAGGGAAAAAAG-TGCCACGGAGTTGTGGGCTTAAAA-AGAAAAAGAGTGCC
858107 ACGGAGTTGTGGGCTTTAAAAGAAAAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTTTAAAAG---AAAAAGGTGCCACGGAGT
* * * *
858150 TATGGAC-TT-AAAGATGAAAAAAGTGCCACGGAGTTATGGGCTT-AAAAG-----GA-TGCCAC
1 TGTGGGCTTTAAAAG-GGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCAC
*
858206 GGAGTTGTGGGC-TTAGAAGGAAAAGAAGGTGCCACGGAGT
65 GGAGTTGTGGGCTTTA-AAAG-AAA-AAGGTGCCACGGAGT
*
858246 TGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTT-AAAAGGGAAAAA-AGTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAAGAGTGCC
* *
858311 ACAGAGTTGTGGGCTTCAAAAGAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGT
*
858351 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTT-AAAAGGGAAAAA-AGTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAAGAGTGCC
*
858416 ACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGT
* * * *
858457 TGTGGGCTTTAAAA-AGAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCAC
1 TGTGGGCTTTAAAAGGGAAAAAAGTGCCACGGAGTTGTGGGCTTAAA-AAGAAAAAGAGTGCCAC
*
858520 GGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGT
65 GGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGT
* * *
858559 TGTGGGCTTT-AAA-GG-AAAAGGTGCCACGAAGCTGTGGGCTT
1 TGTGGGCTTTAAAAGGGAAAAAAGTGCCACGGAGTTGTGGGCTT
858600 TGAAGAAAAA
Statistics
Matches: 400, Mismatches: 30, Indels: 47
0.84 0.06 0.10
Matches are distributed among these distances:
95 4 0.01
96 23 0.06
97 23 0.06
98 8 0.02
99 23 0.06
100 25 0.06
101 9 0.02
102 55 0.14
103 29 0.07
104 12 0.03
105 121 0.30
106 41 0.10
107 25 0.06
108 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (102 bp):
TGTGGGCTTTAAAAGGGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCACG
GAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGT
Found at i:858204 original size:27 final size:27
Alignment explanation
Indices: 858173--858226 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
858163 ATGAAAAAAG
858173 TGCCACGGAGTTATGGGCTTAAAAGGA
1 TGCCACGGAGTTATGGGCTTAAAAGGA
* *
858200 TGCCACGGAGTTGTGGGCTTAGAAGGA
1 TGCCACGGAGTTATGGGCTTAAAAGGA
858227 AAAGAAGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.22
Consensus pattern (27 bp):
TGCCACGGAGTTATGGGCTTAAAAGGA
Found at i:858615 original size:31 final size:31
Alignment explanation
Indices: 858067--858695 Score: 325
Period size: 34 Copynumber: 18.8 Consensus size: 31
858057 AGGGAGAAAG
* **
858067 ATGCCACGGAGTTGTGGACTTAAAAGGGAAAAA
1 ATGCCACGGAGTTGTGGGCTTTGAA--GAAAAA
*
858100 GAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT-GAAG--AAAAA
* * * *
858136 AGGTGCCACGGAGTTATGGACTTAAAGATGAAAAA
1 A--TGCCACGGAGTTGTGGGCTT--TGAAGAAAAA
* **
858171 AGTGCCACGGAGTTATGGGC-TT--A-AAAGG
1 A-TGCCACGGAGTTGTGGGCTTTGAAGAAAAA
*
858199 ATGCCACGGAGTTGTGGGCTTAGAAGGAAAAGA
1 ATGCCACGGAGTTGTGGGCTTTGAA-GAAAA-A
*
858232 AGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAA
1 A--TGCCACGGAGTTGTGGGCTTT--GAA--GAAAAA
*
858269 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * **
858304 GTGTGCCACAGAGTTGTGGGCTTCAAAAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTT-TGAAGAAAAA
*
858338 GGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTTG--AA--GAAAAA
*
858374 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * *
858409 GTGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTTT-GA-AGAAAAA
* *
858444 GGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * * *
858478 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA
1 -ATGCCACGGAGTTGTGGGCTT--TGAAGAAAAA
858512 AGTGCCACGGAGTTGTGGGCTTTGAA-AAGAAGA
1 A-TGCCACGGAGTTGTGGGCTTTGAAGAA-AA-A
* *
858545 AGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAG
1 A--TGCCACGGAGTTGTGGGCTTTGAA-GAAAAA
* * *
858579 GTGCCACGAAGCTGTGGGCTTTGAAGAAAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
* * * *
858610 ATGCCACTGAGTCGTGGACTTTG-AGACAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
* * * * *
858640 ATGCCACTGAGTCGTGGACTTTAAAGGAAAAG
1 ATGCCACGGAGTTGTGGGCTTTGAA-GAAAAA
* * *
858672 ATGCCACTGAGTCGTGGACTTTGA
1 ATGCCACGGAGTTGTGGGCTTTGA
858696 GCAGAGATTG
Statistics
Matches: 495, Mismatches: 59, Indels: 84
0.78 0.09 0.13
Matches are distributed among these distances:
27 17 0.03
28 5 0.01
30 29 0.06
31 25 0.05
32 55 0.11
33 24 0.05
34 133 0.27
35 109 0.22
36 36 0.07
37 55 0.11
38 7 0.01
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (31 bp):
ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
Found at i:858669 original size:93 final size:94
Alignment explanation
Indices: 858548--858851 Score: 390
Period size: 93 Copynumber: 3.3 Consensus size: 94
858538 AAGAAGAAGG
* * * * * * *
858548 TGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCAC-GAAG-CTGTGGGCTTTGAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTG-AGTC-GTGGACTTTGAAGAAAGAT
*
858611 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
64 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
*
858641 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTG-AGCAGAGATT
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAAG-AAAGATT
*
858705 GCCACTGGGTCGTGGACTTTGAGAAGAGAT
65 GCCACTGAGTCGTGGACTTTGAGAAGAGAT
* *
858735 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGATTGCCACTGAGTCGTGGACTTT-AAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-TGCCACTGAGTCGTGGACTTTGAAGAA-AGAT
858797 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
64 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
858828 TGCCACTGAGTCGTGGACTTTAAA
1 TGCCACTGAGTCGTGGACTTTAAA
858852 AAGGTATTTG
Statistics
Matches: 187, Mismatches: 15, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
92 10 0.05
93 152 0.81
94 25 0.13
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (94 bp):
TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAGATTG
CCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:858711 original size:31 final size:31
Alignment explanation
Indices: 858611--858848 Score: 374
Period size: 31 Copynumber: 7.7 Consensus size: 31
858601 GAAGAAAAAA
*
858611 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
* *
858641 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-
1 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGAT
*
858673 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
858704 TGCCACTGGGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
858735 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
858766 TGCCACTGAGTCGTGGACTTTAAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
858797 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
858828 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
858849 AAAAAGGTAT
Statistics
Matches: 194, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
30 26 0.13
31 143 0.74
32 24 0.12
33 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:859877 original size:16 final size:16
Alignment explanation
Indices: 859856--859897 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
859846 CTCACCGAGA
*
859856 TTTTCTGTTTTGTTTT
1 TTTTCTGTTTTCTTTT
*
859872 TTTTCTTTTTTCTTTT
1 TTTTCTGTTTTCTTTT
*
859888 TTTTGTGTTT
1 TTTTCTGTTT
859898 GGAAAAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.83
Consensus pattern (16 bp):
TTTTCTGTTTTCTTTT
Found at i:867154 original size:52 final size:52
Alignment explanation
Indices: 867076--867203 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
867066 CGAAATATGA
*
867076 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
867128 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
867180 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
867204 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:867230 original size:13 final size:13
Alignment explanation
Indices: 867212--867236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
867202 CAAAGATCAG
867212 TGTATCGATACAA
1 TGTATCGATACAA
867225 TGTATCGATACA
1 TGTATCGATACA
867237 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:867316 original size:13 final size:13
Alignment explanation
Indices: 867298--867322 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
867288 ACAAAAAAAA
867298 TGTATCGATACAT
1 TGTATCGATACAT
867311 TGTATCGATACA
1 TGTATCGATACA
867323 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:868259 original size:67 final size:68
Alignment explanation
Indices: 868135--868261 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
868125 ATTGGGTTTT
* * *
868135 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
868200 AGA
66 AGA
* * * * *
868203 AAAG-TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTGAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
868262 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:868295 original size:122 final size:124
Alignment explanation
Indices: 868157--868485 Score: 398
Period size: 128 Copynumber: 2.6 Consensus size: 124
868147 GGTGCCAATA
* * * *
868157 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAA-AAG-TGA-TAAAGATGC
1 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGACAATAAGCTGATTAAAG--GC
* *
868219 CA-ATATGTTG-ATTCATGGCCAACGATATTGGGCTTGAAGATGAGAAAAAGGATGTCAACG
64 CAGATAT-TGGAATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
* * *
868279 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGACAATAAGCTGATTAAAGGCCA
868344 GCGATATTGGACTATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
66 --GATATTGGA--ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
* * * *
868407 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT-GAAGA--TGACAATAAGCTGATTAAAGG
868472 CCAGTTATATTGGA
63 CCAG--ATATTGGA
868486 CTTAAAGGTG
Statistics
Matches: 183, Mismatches: 10, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
122 42 0.23
123 6 0.03
124 3 0.02
125 6 0.03
126 4 0.02
128 85 0.46
129 5 0.03
131 32 0.17
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (124 bp):
TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGACAATAAGCTGATTAAAGGCCA
GATATTGGAATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACG
Found at i:868387 original size:128 final size:130
Alignment explanation
Indices: 868229--868487 Score: 459
Period size: 128 Copynumber: 2.0 Consensus size: 130
868219 CAATATGTTG
*
868229 ATTCATGGCCAACGATATTGGGCTTGAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
1 ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
*
868294 AGCTACATTGAACTTAAAGAT-GAAGA-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
66 AGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
868357 ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
1 ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
**
868422 AGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGTTATATTGGAC
66 AGCTACATTGAACTTAAAGATGGAAAA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
868487 T
130 T
868488 TAAAGGTGCC
Statistics
Matches: 124, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
128 85 0.69
129 4 0.03
131 35 0.28
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (130 bp):
ATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCC
AGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
Found at i:868546 original size:49 final size:49
Alignment explanation
Indices: 868407--868912 Score: 607
Period size: 49 Copynumber: 10.6 Consensus size: 49
868397 GATGTCAACG
* *
868407 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
* * *
868459 TGCTGATTCAAGGCCAGTTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
868502 TGTTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
868551 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * * *
868600 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
868649 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
868698 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
868741 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * * *
868790 TGCTGATTCAGGGCCAGCTATATTGGGCTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
868833 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
868882 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
868913 GAAGGGTTGC
Statistics
Matches: 387, Mismatches: 49, Indels: 39
0.81 0.10 0.08
Matches are distributed among these distances:
43 112 0.29
45 2 0.01
47 2 0.01
48 1 0.00
49 243 0.63
52 27 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
Found at i:868577 original size:92 final size:97
Alignment explanation
Indices: 868407--868917 Score: 678
Period size: 92 Copynumber: 5.4 Consensus size: 97
868397 GATGTCAACG
* * * * *
868407 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT-G--AAGGTGCCAATGTGCTGATTCAAGG
* * *
868472 CCAGTTATATTGGACTT-AA-A-G-G-TGCCAATG
63 CCAGCTACATTGGACTTAAAGATGAGATGCCAATA
* * *
868502 TGTTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
868567 GCTACATTGGACTTAAAGATGATGATGCCAATA
66 GCTACATTGGACTTAAAGATGA-GATGCCAATA
* *
868600 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
868665 GCTACATTGGACTTAAAGATGAAGATGCCAATA
66 GCTACATTGGACTTAAAGATG-AGATGCCAATA
*
868698 TGCTGATTCAAGGCCAGCGATATTGGACTT--A----AAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
868757 GCTACATTGGACTTAAAGATGAAGATGCCAATA
66 GCTACATTGGACTTAAAGATG-AGATGCCAATA
* *
868790 TGCTGATTCAGGGCCAGCTATATTGGGCTT--A----AAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
868849 GCTACATTGGACTTAAAGATGAAGATGCCAATA
66 GCTACATTGGACTTAAAGATG-AGATGCCAATA
*
868882 TGCTGATTCAAGGCCAGCTATATTGGGCTTAGAAGG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGG
868918 GTTGCCACCG
Statistics
Matches: 387, Mismatches: 17, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
92 215 0.56
93 2 0.01
94 2 0.01
95 35 0.09
96 1 0.00
97 1 0.00
98 130 0.34
99 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (97 bp):
TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCA
GCTACATTGGACTTAAAGATGAGATGCCAATA
Found at i:868749 original size:141 final size:145
Alignment explanation
Indices: 868406--868917 Score: 651
Period size: 141 Copynumber: 3.6 Consensus size: 145
868396 GGATGTCAAC
* *
868406 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AGA--TGCCAATATGCTGATTCAAG
* *
868471 GCCAGTTATATTGGACTT--A----AAGGTGCCAATGTGTTGATTCAAGGCCAGCTACATTGGAC
62 GCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
*
868530 TTAAAGGTGAAGGTGCCAAT
127 TTAAAGATGAA-GTGCCAAT
*
868550 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGA-GATGCCAATATGCTGATTCAAGGCC
* *
868615 AGCGATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
65 AGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
868680 AAGATGAAGATGCCAAT
130 AAGATGAAG-TGCCAAT
* * * *
868697 ATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-G-TGCCAATGTGCTGATTCAAGGCCA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGATGCCAATATGCTGATTCAAGGCCA
* * * * * * *
868757 GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAGGGCCAGCTATATTGGGCTT-A
66 GCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
868821 A-A-G--GTGCCAAT
131 AGATGAAGTGCCAAT
868832 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGATGCCAATATGCTGATTCAAGGCC
*
868897 AGCTATATTGGGCTTAGAAGG
65 AGCTATATTGGACTTA-AAGG
868918 GTTGCCACCG
Statistics
Matches: 324, Mismatches: 29, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
135 35 0.11
136 3 0.01
137 1 0.00
138 2 0.01
139 1 0.00
140 3 0.01
141 149 0.46
142 5 0.02
143 3 0.01
144 36 0.11
145 1 0.00
146 3 0.01
147 82 0.25
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (145 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGATGCCAATATGCTGATTCAAGGCCA
GCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
AGATGAAGTGCCAAT
Found at i:868956 original size:33 final size:35
Alignment explanation
Indices: 868912--868981 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
868902 TATTGGGCTT
868912 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
868946 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
868980 AG
1 AG
868982 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:869024 original size:34 final size:33
Alignment explanation
Indices: 868986--869522 Score: 572
Period size: 34 Copynumber: 15.8 Consensus size: 33
868976 AGGAAGGGAG
* *
868986 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
*
869020 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAG--GAA
* * *
869057 AAAGGTGCCACGGAGTTATGGACTTAAAGATGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
* *
869091 AAAAGTGCCACGGAGTTATGGGCTTAAAAGG--
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
869122 --A--TGCCACGGAGTTGTGGGCTTAGAAGGAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGG-AA
869152 AGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 A-AAGGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
869189 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
869224 AAAGTGTGCCACAGAGTTGTGGGCTTCAAAA-GAA
1 AAAG-GTGCCACGGAGTTGTGGGCTT-AAAAGGAA
869258 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
869294 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
869329 AAAGTGTGCCACAGAGTTGTGGGCTTTAAACA-GAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TTAAA-AGGAA
*
869364 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
869398 AAAGGTGCCACGGAGTTGTGGACTTAAAGATGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
*
869432 AAAAGTGCCACGGAGTTGTGGGCTTTGAAAA-GAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* *
869466 GAAGGTGCCACGGAGTTGTGGGCTTTAAAGG-A
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
869498 AAAGGTGCCACGAAGCTGTGGGCTT
1 AAAGGTGCCACGGAGTTGTGGGCTT
869523 TGAAGAAAAA
Statistics
Matches: 443, Mismatches: 32, Indels: 58
0.83 0.06 0.11
Matches are distributed among these distances:
27 24 0.05
29 1 0.00
32 26 0.06
33 30 0.07
34 145 0.33
35 111 0.25
36 48 0.11
37 56 0.13
38 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:869117 original size:105 final size:102
Alignment explanation
Indices: 868966--869522 Score: 633
Period size: 105 Copynumber: 5.4 Consensus size: 102
868956 CACCGACTTG
* * * *
868966 TGTGGGCTTTAGGAAGGG-AGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTA-AAAGGGAAAAAAG-TGCCACGGAGTTGTGGGCTTAAAA-AGAAAAAGAGTGCC
869030 ACGGAGTTGTGGGCTTTAAAAGAAAAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTTTAAAAG---AAAAAGGTGCCACGGAGT
* * * *
869073 TATGGAC-TT-AAAGATGAAAAAAGTGCCACGGAGTTATGGGCTT-AAAAG-----GA-TGCCAC
1 TGTGGGCTTTAAAAG-GGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCAC
*
869129 GGAGTTGTGGGC-TTAGAAGGAAAAGAAGGTGCCACGGAGT
65 GGAGTTGTGGGCTTTA-AAAG-AAA-AAGGTGCCACGGAGT
*
869169 TGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTT-AAAAGGGAAAAA-AGTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAAGAGTGCC
* *
869234 ACAGAGTTGTGGGCTTCAAAAGAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGT
*
869274 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTT-AAAAGGGAAAAA-AGTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAAGAGTGCC
*
869339 ACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGT
* * * *
869380 TGTGGGCTTTAAAA-AGAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCAC
1 TGTGGGCTTTAAAAGGGAAAAAAGTGCCACGGAGTTGTGGGCTTAAA-AAGAAAAAGAGTGCCAC
*
869443 GGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGT
65 GGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGT
* * *
869482 TGTGGGCTTT-AAA-GG-AAAAGGTGCCACGAAGCTGTGGGCTT
1 TGTGGGCTTTAAAAGGGAAAAAAGTGCCACGGAGTTGTGGGCTT
869523 TGAAGAAAAA
Statistics
Matches: 400, Mismatches: 30, Indels: 47
0.84 0.06 0.10
Matches are distributed among these distances:
95 4 0.01
96 23 0.06
97 23 0.06
98 8 0.02
99 23 0.06
100 25 0.06
101 9 0.02
102 55 0.14
103 29 0.07
104 12 0.03
105 121 0.30
106 41 0.10
107 25 0.06
108 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (102 bp):
TGTGGGCTTTAAAAGGGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCACG
GAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGT
Found at i:869127 original size:27 final size:27
Alignment explanation
Indices: 869096--869149 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
869086 ATGAAAAAAG
869096 TGCCACGGAGTTATGGGCTTAAAAGGA
1 TGCCACGGAGTTATGGGCTTAAAAGGA
* *
869123 TGCCACGGAGTTGTGGGCTTAGAAGGA
1 TGCCACGGAGTTATGGGCTTAAAAGGA
869150 AAAGAAGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.22
Consensus pattern (27 bp):
TGCCACGGAGTTATGGGCTTAAAAGGA
Found at i:869538 original size:31 final size:31
Alignment explanation
Indices: 868990--869618 Score: 325
Period size: 34 Copynumber: 18.8 Consensus size: 31
868980 AGGGAGAAAG
* **
868990 ATGCCACGGAGTTGTGGACTTAAAAGGGAAAAA
1 ATGCCACGGAGTTGTGGGCTTTGAA--GAAAAA
*
869023 GAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT-GAAG--AAAAA
* * * *
869059 AGGTGCCACGGAGTTATGGACTTAAAGATGAAAAA
1 A--TGCCACGGAGTTGTGGGCTT--TGAAGAAAAA
* **
869094 AGTGCCACGGAGTTATGGGC-TT--A-AAAGG
1 A-TGCCACGGAGTTGTGGGCTTTGAAGAAAAA
*
869122 ATGCCACGGAGTTGTGGGCTTAGAAGGAAAAGA
1 ATGCCACGGAGTTGTGGGCTTTGAA-GAAAA-A
*
869155 AGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAA
1 A--TGCCACGGAGTTGTGGGCTTT--GAA--GAAAAA
*
869192 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * **
869227 GTGTGCCACAGAGTTGTGGGCTTCAAAAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTT-TGAAGAAAAA
*
869261 GGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTTG--AA--GAAAAA
*
869297 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * *
869332 GTGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTTT-GA-AGAAAAA
* *
869367 GGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * * *
869401 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA
1 -ATGCCACGGAGTTGTGGGCTT--TGAAGAAAAA
869435 AGTGCCACGGAGTTGTGGGCTTTGAA-AAGAAGA
1 A-TGCCACGGAGTTGTGGGCTTTGAAGAA-AA-A
* *
869468 AGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAG
1 A--TGCCACGGAGTTGTGGGCTTTGAA-GAAAAA
* * *
869502 GTGCCACGAAGCTGTGGGCTTTGAAGAAAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
* * * *
869533 ATGCCACTGAGTCGTGGACTTTG-AGACAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
* * * * *
869563 ATGCCACTGAGTCGTGGACTTTAAAGGAAAAG
1 ATGCCACGGAGTTGTGGGCTTTGAA-GAAAAA
* * *
869595 ATGCCACTGAGTCGTGGACTTTGA
1 ATGCCACGGAGTTGTGGGCTTTGA
869619 GCAGAGATTG
Statistics
Matches: 495, Mismatches: 59, Indels: 84
0.78 0.09 0.13
Matches are distributed among these distances:
27 17 0.03
28 5 0.01
30 29 0.06
31 25 0.05
32 55 0.11
33 24 0.05
34 133 0.27
35 109 0.22
36 36 0.07
37 55 0.11
38 7 0.01
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (31 bp):
ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
Found at i:869592 original size:93 final size:94
Alignment explanation
Indices: 869471--869774 Score: 390
Period size: 93 Copynumber: 3.3 Consensus size: 94
869461 AAGAAGAAGG
* * * * * * *
869471 TGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCAC-GAAG-CTGTGGGCTTTGAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTG-AGTC-GTGGACTTTGAAGAAAGAT
*
869534 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
64 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
*
869564 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTG-AGCAGAGATT
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAAG-AAAGATT
*
869628 GCCACTGGGTCGTGGACTTTGAGAAGAGAT
65 GCCACTGAGTCGTGGACTTTGAGAAGAGAT
* *
869658 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGATTGCCACTGAGTCGTGGACTTT-AAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-TGCCACTGAGTCGTGGACTTTGAAGAA-AGAT
869720 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
64 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
869751 TGCCACTGAGTCGTGGACTTTAAA
1 TGCCACTGAGTCGTGGACTTTAAA
869775 AAGGTATTTG
Statistics
Matches: 187, Mismatches: 15, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
92 10 0.05
93 152 0.81
94 25 0.13
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (94 bp):
TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAGATTG
CCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:869634 original size:31 final size:31
Alignment explanation
Indices: 869534--869771 Score: 374
Period size: 31 Copynumber: 7.7 Consensus size: 31
869524 GAAGAAAAAA
*
869534 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
* *
869564 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-
1 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGAT
*
869596 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
869627 TGCCACTGGGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
869658 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
869689 TGCCACTGAGTCGTGGACTTTAAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
869720 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
869751 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
869772 AAAAAGGTAT
Statistics
Matches: 194, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
30 26 0.13
31 143 0.74
32 24 0.12
33 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:870800 original size:16 final size:16
Alignment explanation
Indices: 870779--870820 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
870769 CTCACCGAGA
*
870779 TTTTCTGTTTTGTTTT
1 TTTTCTGTTTTCTTTT
*
870795 TTTTCTTTTTTCTTTT
1 TTTTCTGTTTTCTTTT
*
870811 TTTTGTGTTT
1 TTTTCTGTTT
870821 GGAAAAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.83
Consensus pattern (16 bp):
TTTTCTGTTTTCTTTT
Found at i:878080 original size:52 final size:52
Alignment explanation
Indices: 878002--878129 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
877992 CGAAATATGA
*
878002 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
878054 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
878106 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
878130 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:878156 original size:13 final size:13
Alignment explanation
Indices: 878138--878162 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
878128 CAAAGATCAG
878138 TGTATCGATACAA
1 TGTATCGATACAA
878151 TGTATCGATACA
1 TGTATCGATACA
878163 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:878242 original size:13 final size:13
Alignment explanation
Indices: 878224--878248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
878214 ACAAAAAAAA
878224 TGTATCGATACAT
1 TGTATCGATACAT
878237 TGTATCGATACA
1 TGTATCGATACA
878249 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:879891 original size:143 final size:143
Alignment explanation
Indices: 879628--879906 Score: 320
Period size: 143 Copynumber: 2.0 Consensus size: 143
879618 AGGATACTGG
* * * *
879628 GATATTTTCATGTCGAAGTTATACCTATAGGGCTGTTTTCATAATTTTTAGAATCGAGTCCTAAT
1 GATACTTTCATGTCAAAGGTATACCTATAGGGCTGTTTTCATAATTTTTAAAATCGAGTCCTAAT
* * * * * *
879693 TTATCACCGAGTTGCTTCTATGCCGAGGGTCATATTAGGCATAGGTTCA-TTTTTTCTTATGTCT
66 TTACCACAGAGTCGCTTCTATGCAGAGGGTCATATTAGGCATAGGTTCAGTTTTTCCTTA-GTCA
879757 TTTAGGGTTACCAA
130 TTTAGGGTTACCAA
*
879771 GATACTTTCATGTCAAAGGTATACCTATAGGGGCAT-TTTT-GTAATTTTTAAAATCGAGTCCTA
1 GATACTTTCATGTCAAAGGTATACCTATA-GGGC-TGTTTTCATAATTTTTAAAATCGAGTCCTA
* **
879834 ATTTGCCACTAG-GTCGCTTCTATGCTAG-GGGT-AGGTATTAGGTGTAGGTTC-GTTTTTCCTT
64 ATTTACCAC-AGAGTCGCTTCTATGC-AGAGGGTCA--TATTAGGCATAGGTTCAGTTTTTCCTT
879895 AGTCATTTAGGG
125 AGTCATTTAGGG
879907 GTATTCGGCA
Statistics
Matches: 115, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
142 1 0.01
143 80 0.70
144 33 0.29
145 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (143 bp):
GATACTTTCATGTCAAAGGTATACCTATAGGGCTGTTTTCATAATTTTTAAAATCGAGTCCTAAT
TTACCACAGAGTCGCTTCTATGCAGAGGGTCATATTAGGCATAGGTTCAGTTTTTCCTTAGTCAT
TTAGGGTTACCAA
Found at i:881227 original size:13 final size:13
Alignment explanation
Indices: 881209--881234 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
881199 CTCAACTGGC
881209 CAAAATAGGTTGG
1 CAAAATAGGTTGG
881222 CAAAATAGGTTGG
1 CAAAATAGGTTGG
881235 TGGCGACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (13 bp):
CAAAATAGGTTGG
Found at i:882737 original size:50 final size:50
Alignment explanation
Indices: 882658--882759 Score: 152
Period size: 50 Copynumber: 2.0 Consensus size: 50
882648 ATTCAAAAAT
* * *
882658 TTTTGGGTTTTACCTAGATGTATCAATACA-TTCTTCATTGTATCTATACA
1 TTTTGGGTTTTACCCAGATGTATCAATACATTTC-TCAATGTATCGATACA
*
882708 TTTTGGGTTTTACCCAGATGTATCGATACATTTCTCAATGTATCGATACA
1 TTTTGGGTTTTACCCAGATGTATCAATACATTTCTCAATGTATCGATACA
882758 TT
1 TT
882760 CAGGCATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
50 44 0.94
51 3 0.06
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (50 bp):
TTTTGGGTTTTACCCAGATGTATCAATACATTTCTCAATGTATCGATACA
Found at i:885281 original size:79 final size:79
Alignment explanation
Indices: 885110--885451 Score: 341
Period size: 79 Copynumber: 4.3 Consensus size: 79
885100 GCGTCGATAT
* * * * *
885110 TTTTATTTCTAAAACACTAATTTTTCATAATCGGAGACACTCTAA-CCCGTTATTTCCAAGGAGA
1 TTTTATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCTAACCCCGTTATTTCCAAGGAGA
* *
885174 TACT-TAAATCCTGG
66 TACTCT-AACCCCGG
* * ** *
885188 CTTTATTTCTAAAATATTGATTTTTCACAATCGGGGATACTCTAACCCCGTTATTTCTGAGGAGC
1 TTTTATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCTAACCCCGTTATTTCCAAGGAGA
*
885253 TACTCTAACCCCGA
66 TACTCTAACCCCGG
* ** * *
885267 TTTTATTTCCAAAATATCGA-TTTTCTACCATCGGGGATACTCCAACCCCGTTATTTCCAAGGAG
1 TTTTATTTCTAAAATATTAATTTTTC-ACAATCGGGGATACTCTAACCCCGTTATTTCCAAGGAG
* * *
885331 ATATTCCAATCCCGG
65 ATACTCTAACCCCGG
* * * * * ** *
885346 CTTTATTTTTAAAACATCAATTTTTCATC-ATCGGGGATACTCTAACCCTGTTATTTCTGAGGGG
1 TTTTATTTCTAAAATATTAATTTTTCA-CAATCGGGGATACTCTAACCCCGTTATTTCCAAGGAG
*
885410 ATACTCTAACCCCGT
65 ATACTCTAACCCCGG
*
885425 TTTTATGTCTAAAATATTAAATTTTTC
1 TTTTATTTCTAAAATATT-AATTTTTC
885452 GTCAGGATGT
Statistics
Matches: 214, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
78 43 0.20
79 156 0.73
80 15 0.07
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (79 bp):
TTTTATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCTAACCCCGTTATTTCCAAGGAGA
TACTCTAACCCCGG
Found at i:885342 original size:158 final size:158
Alignment explanation
Indices: 885155--885441 Score: 434
Period size: 158 Copynumber: 1.8 Consensus size: 158
885145 GACACTCTAA
* * **
885155 CCCGTTATTTCCAAGGAGATACTTAAATCCTGGCTTTATTTCTAAAATATTGATTTTTCA-CAAT
1 CCCGTTATTTCCAAGGAGATACTTAAATCCCGGCTTTATTTCTAAAACATCAATTTTTCATC-AT
* *
885219 CGGGGATACTCTAACCCCGTTATTTCTGAGGAGCTACTCTAACCCCGATTTTATTTCCAAAATAT
65 CGGGGATACTCTAACCCCGTTATTTCTGAGGAGATACTCTAACCCCGATTTTATGTCCAAAATAT
885284 CGATTTTCTACCATCGGGGATACTCCAAC
130 CGATTTTCTACCATCGGGGATACTCCAAC
* *
885313 CCCGTTATTTCCAAGGAGATA-TTCCAATCCCGGCTTTATTTTTAAAACATCAATTTTTCATCAT
1 CCCGTTATTTCCAAGGAGATACTT-AAATCCCGGCTTTATTTCTAAAACATCAATTTTTCATCAT
* * * *
885377 CGGGGATACTCTAACCCTGTTATTTCTGAGGGGATACTCTAACCCCGTTTTTATGTCTAAAATAT
65 CGGGGATACTCTAACCCCGTTATTTCTGAGGAGATACTCTAACCCCGATTTTATGTCCAAAATAT
885442 TAAATTTTTC
Statistics
Matches: 115, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
157 2 0.02
158 112 0.97
159 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (158 bp):
CCCGTTATTTCCAAGGAGATACTTAAATCCCGGCTTTATTTCTAAAACATCAATTTTTCATCATC
GGGGATACTCTAACCCCGTTATTTCTGAGGAGATACTCTAACCCCGATTTTATGTCCAAAATATC
GATTTTCTACCATCGGGGATACTCCAAC
Found at i:897751 original size:19 final size:18
Alignment explanation
Indices: 897716--897779 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
897706 TCTAAACAAT
* *
897716 AAAAATAAAAACA-AAAA
1 AAAAAAAAAAAGAGAAAA
897733 AAAAACCAAAAAA-AGAAAA
1 AAAAA--AAAAAAGAGAAAA
897752 AAAAGAAAAAAAGAGAAAA
1 AAAA-AAAAAAAGAGAAAA
897771 GAAAAAAAA
1 -AAAAAAAA
897780 CTGCTTAAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 5 0.12
18 7 0.17
19 23 0.57
20 5 0.12
ACGTcount: A:0.86, C:0.05, G:0.08, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAAAGAGAAAA
Found at i:897760 original size:15 final size:15
Alignment explanation
Indices: 897740--897778 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
897730 AAAAAAAACC
897740 AAAAAAAGAAAAAAAAG
1 AAAAAAAG--AAAAAAG
*
897757 AAAAAAAGAGAAAAG
1 AAAAAAAGAAAAAAG
897772 AAAAAAA
1 AAAAAAA
897779 ACTGCTTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
17 8 0.38
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:897779 original size:17 final size:17
Alignment explanation
Indices: 897716--897778 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
897706 TCTAAACAAT
*
897716 AAAAATAAAAACAA-AAA
1 AAAAAGAAAAA-AAGAAA
*
897733 AAAAACCAAAAAAAGAAA
1 AAAAA-GAAAAAAAGAAA
897751 AAAAAGAAAAAAAG--A
1 AAAAAGAAAAAAAGAAA
*
897766 GAAAAGAAAAAAA
1 AAAAAGAAAAAAA
897779 ACTGCTTAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 13 0.32
17 15 0.37
18 13 0.32
ACGTcount: A:0.86, C:0.05, G:0.08, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAAAAGAAA
Found at i:898842 original size:61 final size:61
Alignment explanation
Indices: 898742--899133 Score: 436
Period size: 61 Copynumber: 6.4 Consensus size: 61
898732 AACTTTTTAT
* * * *
898742 CCTTTCAGTCCTCGAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGTA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
898803 -CTTTCCAGTCCTCAAATAACAAGATGCCTTCTCCTTTTAAAGCCTAGACAAGTTGGTGGCA
1 CCTTT-CAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
898864 CC-TTCTAGTCCCCAAAGAGCAGGACACTTTCCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CCTTTC-AGTCCTCAAAGAGCAGG--A---TGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGG
898928 CA
60 CA
* * * *
898930 CCTTTCAGTTCTCAAAGAGCGGGACGCCTTCTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
898991 CCTTTCAGTCCTCAAAGAGTAGGACGTCTTCTCCTTTTAAAGCCCACACAAGTTGGTGG-A
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
899051 TCTTTCGGTCCTCAAAGAGTAGGA--CGTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
899110 CC-TTCTAGTCCTCAAAAAGCAGGA
1 CCTTTC-AGTCCTCAAAGAGCAGGA
899134 CACACTTAAT
Statistics
Matches: 281, Mismatches: 39, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
58 32 0.11
59 17 0.06
60 28 0.10
61 149 0.53
62 1 0.00
63 1 0.00
64 1 0.00
66 49 0.17
67 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:898910 original size:127 final size:124
Alignment explanation
Indices: 898748--899136 Score: 438
Period size: 127 Copynumber: 3.2 Consensus size: 124
898738 TTATCCTTTC
* * *
898748 AGTCCTCGAAGAGCAGG--ATG-CCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGTA-CTTTCC
1 AGTCCTCAAAGAGCAGGACACGTCCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGCACCTTT-C
* * * * *
898809 AGTCCTCAAATAACAAGATGCCTTCTCCTTTTAAAGCCTAGACAAGTTGGTGGCACCTTCT
65 AGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
* * *
898870 AGTCCCCAAAGAGCAGGACACTTTCCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACAC-GT-CCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGCACCTTT
* * *
898935 CAGTTCTCAAAGAGCGGGACGCCTTCTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-T
64 CAGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
* * * *
898996 CAGTCCTCAAAGAGTAGG--ACGT-CTTCTCCTTTTAAAGCCCACACAAGTTGG-TGGATCTTTC
1 -AGTCCTCAAAGAGCAGGACACGTCCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGCACCTTTC
* * * * *
899057 GGTCCTCAAAGAGTAGGA-CGTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
65 AGTCCTCAAAGAGCAGGAGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
*
899116 AGTCCTCAAAAAGCAGGACAC
1 AGTCCTCAAAGAGCAGGACAC
899137 ACTTAATTTC
Statistics
Matches: 225, Mismatches: 32, Indels: 21
0.81 0.12 0.08
Matches are distributed among these distances:
119 50 0.22
120 1 0.00
121 23 0.10
122 43 0.19
124 2 0.01
125 2 0.01
126 1 0.00
127 99 0.44
128 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (124 bp):
AGTCCTCAAAGAGCAGGACACGTCCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGCACCTTTCA
GTCCTCAAAGAGCAGGAGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
Found at i:899164 original size:43 final size:41
Alignment explanation
Indices: 899115--899218 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 41
899105 TGGCACCTTC
* *
899115 TAGTCCTCAAAAAGCAGGACACACTTAATTTCCTTTTTTTCCT
1 TAGTCCTCAAAAAGAAGGACACACTTAATCTCC--TTTTTCCT
* * * * *
899158 TTGTCCTCAAAGAGAAGGACGCATTTTATCTCCTTTTTCCT
1 TAGTCCTCAAAAAGAAGGACACACTTAATCTCCTTTTTCCT
* *
899199 TAGTCCTTAAAAAGTAGGAC
1 TAGTCCTCAAAAAGAAGGAC
899219 GCCTTTTTTC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
41 24 0.48
43 26 0.52
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (41 bp):
TAGTCCTCAAAAAGAAGGACACACTTAATCTCCTTTTTCCT
Found at i:899305 original size:62 final size:62
Alignment explanation
Indices: 899198--899654 Score: 462
Period size: 61 Copynumber: 7.4 Consensus size: 62
899188 TCCTTTTTCC
* * * * * *
899198 TTAGTCCTTAAAAAGTAGGACGCCTTTTTTCTTTTCAAAGCCAACACGAGTTGATGGCACCCT
1 TTAGTCCTCAAAGAGTAGGATGCC-TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* * * *
899261 TTAGTCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCAACATGAGTTGGTGGCACCCT
1 TTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* * ** * * * *
899323 TTAGTCATCAAAGAGCAGGACACCTTTTTATTTTC-AAGTCCATATGAGTTGGTGGCACCTT
1 TTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* ** *
899384 TCAGTCCTTGAAGAGTAGGATACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
1 TTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
** * * * * *
899446 TTAGTCCTCAAAGAGTAGGGCGTCTATTTCTTTT-AAAGCCCATACAAGTTGGTGGTACCTT
1 TTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* * * * ** *
899507 TCTA-TTCTCAAAAACTAGGATGCCTTTTCCTTTT-AAAGCCCACATAAGTTGGTGGCACATT
1 T-TAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* *
899568 TTTGTCCTCAAAGAGT-GAGATGCC-TTTTCCTTTCAAAGCCCACA--AGTTGGTGGCACCTT
1 TTAGTCCTCAAAGAGTAG-GATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* *
899627 TTAGTCCCCAAGGAGTAGGATGCACTTT
1 TTAGTCCTCAAAGAGTAGGATGC-CTTT
899655 ATTTCCTTTT
Statistics
Matches: 328, Mismatches: 58, Indels: 18
0.81 0.14 0.04
Matches are distributed among these distances:
59 32 0.10
60 11 0.03
61 148 0.45
62 117 0.36
63 20 0.06
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (62 bp):
TTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
Found at i:899398 original size:123 final size:122
Alignment explanation
Indices: 899229--899582 Score: 397
Period size: 123 Copynumber: 2.9 Consensus size: 122
899219 GCCTTTTTTC
* * *
899229 TTTTCAAAGCCAACACGAGTTGATGGCACCCTTT-AGTCTTCAAAGAGTAGGATGCCTTTTTCTT
1 TTTT-AAAGCCCATACGAGTTGGTGGCA-CCTTTCAGTCTT-AAAGAGTAGGATGCCTTTTTCTT
* * * *
899293 TTCAAAGCCAACATGAGTTGGTGGCACCCTTTAGTCATCAAAGAGCAGGACACCTTTTTA
63 TTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTATTTA
* * * * *
899353 TTTTCAAGTCCATATGAGTTGGTGGCACCTTTCAGTCCTTGAAGAGTAGGATACCTTTTTCTTTT
1 TTTTAAAGCCCATACGAGTTGGTGGCACCTTTCAGT-CTTAAAGAGTAGGATGCCTTTTTCTTTT
* * * ** *
899418 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGGCGTCTATTTC
65 CAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTATTTA
* * * * * * *
899476 TTTTAAAGCCCATACAAGTTGGTGGTACCTTTCTATTCTCAAAAACTAGGATGCCTTTTCCTTTT
1 TTTTAAAGCCCATACGAGTTGGTGGCACCTTTC-AGTCTTAAAGAGTAGGATGCCTTTTTCTTTT
* * *
899541 -AAAGCCCACATAAGTTGGTGGCACATTTTTGTCCTCAAAGAG
65 CAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAG
899583 TGAGATGCCT
Statistics
Matches: 193, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
122 43 0.22
123 141 0.73
124 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (122 bp):
TTTTAAAGCCCATACGAGTTGGTGGCACCTTTCAGTCTTAAAGAGTAGGATGCCTTTTTCTTTTC
AAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTATTTA
Found at i:899684 original size:41 final size:41
Alignment explanation
Indices: 899624--899811 Score: 170
Period size: 41 Copynumber: 4.6 Consensus size: 41
899614 TTGGTGGCAC
* * * *
899624 CTTTTAGTCCCCAAGGAGTAGGATGCACTTTATTTCCTTTT
1 CTTTTTGTCCTCAAAGAGCAGGATGCACTTTATTTCCTTTT
* *
899665 CTTTTTGTCTTCAAAGAGTAGGATGCACTTTATTTCCTTTT
1 CTTTTTGTCCTCAAAGAGCAGGATGCACTTTATTTCCTTTT
* *
899706 CTCCTGTGTCCTCAAAGAGCAGGA--CACATTTAATTT-CTTTT
1 CT-TTTTGTCCTCAAAGAGCAGGATGCAC-TTT-ATTTCCTTTT
* * ** *
899747 ATTTTTGTCCTCAAGGAGCAGGACCCA-TTTCTTTCGCTTTT
1 CTTTTTGTCCTCAAAGAGCAGGATGCACTTTATTTC-CTTTT
* *
899788 C-CTTTATCCTCAAAGAGCAGGATG
1 CTTTTTGTCCTCAAAGAGCAGGATG
899812 TACTCATTTT
Statistics
Matches: 121, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.02
40 42 0.35
41 53 0.44
42 23 0.19
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.40
Consensus pattern (41 bp):
CTTTTTGTCCTCAAAGAGCAGGATGCACTTTATTTCCTTTT
Found at i:899742 original size:42 final size:40
Alignment explanation
Indices: 899652--899809 Score: 160
Period size: 40 Copynumber: 3.9 Consensus size: 40
899642 TAGGATGCAC
* * *
899652 TTTATTTCCTTTTCTTTTTGTCTTCAAAGAGTAGGATGCAC-
1 TTTATTTCCTTTTCTCTTTGTCCTCAAAGAGCAGGA--CACA
*
899693 TTTATTTCCTTTTCTCCTGTGTCCTCAAAGAGCAGGACACA
1 TTTATTTCCTTTTCT-CTTTGTCCTCAAAGAGCAGGACACA
* * * *
899734 TTTAATTT-CTTTTATTTTTGTCCTCAAGGAGCAGGACCCA
1 TTT-ATTTCCTTTTCTCTTTGTCCTCAAAGAGCAGGACACA
* *
899774 TTTCTTTCGCTTTTC-CTTTATCCTCAAAGAGCAGGA
1 TTTATTTC-CTTTTCTCTTTGTCCTCAAAGAGCAGGA
899810 TGTACTCATT
Statistics
Matches: 98, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.03
40 45 0.46
41 29 0.30
42 21 0.21
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (40 bp):
TTTATTTCCTTTTCTCTTTGTCCTCAAAGAGCAGGACACA
Found at i:900439 original size:20 final size:20
Alignment explanation
Indices: 900414--900471 Score: 116
Period size: 20 Copynumber: 2.9 Consensus size: 20
900404 ATTTTCACAA
900414 TTTGTATCGATACATTCTTC
1 TTTGTATCGATACATTCTTC
900434 TTTGTATCGATACATTCTTC
1 TTTGTATCGATACATTCTTC
900454 TTTGTATCGATACATTCT
1 TTTGTATCGATACATTCT
900472 AGGTTTTACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTGTATCGATACATTCTTC
Found at i:902802 original size:13 final size:13
Alignment explanation
Indices: 902784--902808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
902774 ACTGAAGCAA
902784 TGTATCGATACAT
1 TGTATCGATACAT
902797 TGTATCGATACA
1 TGTATCGATACA
902809 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:906220 original size:13 final size:13
Alignment explanation
Indices: 906202--906226 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
906192 CAATTTATGG
906202 TGTATCGATACAA
1 TGTATCGATACAA
906215 TGTATCGATACA
1 TGTATCGATACA
906227 TACTATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:906221 original size:33 final size:32
Alignment explanation
Indices: 906179--906246 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
906169 TGCTACAAGC
*
906179 CAATGTATCGATACA-ATTTATGGTGTATCGATA
1 CAATGTATCGATACATA-CTAT-GTGTATCGATA
906212 CAATGTATCGATACATACTATGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCGATA
906244 CAA
1 CAA
906247 GTTTAGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 18 0.55
34 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCGATA
Found at i:907435 original size:16 final size:16
Alignment explanation
Indices: 907392--907428 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
907382 TATTGATACA
907392 TCACTGTTCATCACTAT
1 TCACTGTTCA-CACTAT
*
907409 TCACTGTTCACACTGT
1 TCACTGTTCACACTAT
907425 TCAC
1 TCAC
907429 GTATCACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.22, C:0.32, G:0.08, T:0.38
Consensus pattern (16 bp):
TCACTGTTCACACTAT
Found at i:907471 original size:34 final size:34
Alignment explanation
Indices: 907431--907519 Score: 162
Period size: 34 Copynumber: 2.6 Consensus size: 34
907421 CTGTTCACGT
907431 ATCACTATTCATGTATCGATAAAAAT-CTCTGTTC
1 ATCACTATTCATGTATCGATAAAAATCCT-TGTTC
907465 ATCACTATTCATGTATCGATAAAAATCCTTGTTC
1 ATCACTATTCATGTATCGATAAAAATCCTTGTTC
907499 ATCACTATTCATGTATCGATA
1 ATCACTATTCATGTATCGATA
907520 CACTATAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
34 52 0.96
35 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (34 bp):
ATCACTATTCATGTATCGATAAAAATCCTTGTTC
Found at i:908055 original size:34 final size:35
Alignment explanation
Indices: 907992--908058 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 35
907982 CTAAGTGATT
907992 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
*
908028 GAGAGGTTTTTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
908059 TGTTGTAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 8 0.28
36 9 0.31
37 12 0.41
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:910015 original size:79 final size:79
Alignment explanation
Indices: 909848--910190 Score: 323
Period size: 79 Copynumber: 4.3 Consensus size: 79
909838 GCATTGATGT
* * * * *
909848 TTTTATTTCCAAAATACCAATTTTTCATAATCGGGGACACTCCAACCCTATTATTTCTGAAGGGG
1 TTTTATTTCTAAAATATCAATTTTTCATAATCAGGGATACTCCAACCCTATTATTTTTG-AGGGG
*
909913 -TGCTCCAACCCCGG
65 ATACTCCAACCCCGG
* * ** * *
909927 CTTTGTTTCTAAAATATTGATTTTTCATAATCAGAGATACTCCAACGCCT-TTATTTTTTAGGGG
1 TTTTATTTCTAAAATATCAATTTTTCATAATCAGGGATACTCCAAC-CCTATTATTTTTGAGGGG
* **
909991 ATACTCTAACCTTGG
65 ATACTCCAACCCCGG
* * * ** *
910006 TTTTATTTCTAAAATACCGATTTTCCACCATCAGGGATACTCCAA-CCTCATTATTTTTGAAGGG
1 TTTTATTTCTAAAATATCAATTTTTCATAATCAGGGATACTCCAACCCT-ATTATTTTTGAGGGG
910070 ATACTCCAACCCCGG
65 ATACTCCAACCCCGG
* * * * * * * *
910085 CTTTATTTCTAAAACATCAATTTTTCATCATCGGGGATACTCCAATCTTGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAATATCAATTTTTCATAATCAGGGATACTCCAACCCTATTATTTTTGAGGGGA
***
910150 TACTCCAACCCTAT
66 TACTCCAACCCCGG
* *
910164 TTTTATCTCTAAAATATTAAATTTTTC
1 TTTTATTTCTAAAATA-TCAATTTTTC
910191 GTCGAGATGT
Statistics
Matches: 212, Mismatches: 46, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
77 3 0.01
78 5 0.02
79 190 0.90
80 14 0.07
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (79 bp):
TTTTATTTCTAAAATATCAATTTTTCATAATCAGGGATACTCCAACCCTATTATTTTTGAGGGGA
TACTCCAACCCCGG
Found at i:910139 original size:158 final size:158
Alignment explanation
Indices: 909848--910179 Score: 398
Period size: 158 Copynumber: 2.1 Consensus size: 158
909838 GCATTGATGT
* * * * *
909848 TTTTATTTCCAAAATACCAATTTTTCATAATCGGGGACACTCCAACCCTATTATTTCTGAAGGGG
1 TTTTATTTCTAAAATACCAATTTTCCACAATCAGGGACACTCCAACCCTATTATTTCTGAAGGGA
* * * **
909913 TGCTCCAACCCCGGCTTTGTTTCTAAAATATTGATTTTTCATAATCAGAGATACTCCAACGCCTT
66 TACTCCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATAATCAGAGATACTCCAACGCCTT
** * * *
909978 TATTTTTTAGGGGATACTCTAACCTTGG
131 TATTTTCGAGGGGATACTCCAACCCTAG
* * * *
910006 TTTTATTTCTAAAATACCGATTTTCCACCATCAGGGATACTCCAA-CCTCATTATTTTTGAAGGG
1 TTTTATTTCTAAAATACCAATTTTCCACAATCAGGGACACTCCAACCCT-ATTATTTCTGAAGGG
* * * * *
910070 ATACTCCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATCATCGGGGATACTCCAA-TCTT
65 ATACTCCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATAATCAGAGATACTCCAACGCCT
*
910134 GTTATTTTCGAGGGGATACTCCAACCCTAT
130 -TTATTTTCGAGGGGATACTCCAACCCTAG
*
910164 TTTTATCTCTAAAATA
1 TTTTATTTCTAAAATA
910180 TTAAATTTTT
Statistics
Matches: 146, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 5 0.03
158 141 0.97
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (158 bp):
TTTTATTTCTAAAATACCAATTTTCCACAATCAGGGACACTCCAACCCTATTATTTCTGAAGGGA
TACTCCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATAATCAGAGATACTCCAACGCCTT
TATTTTCGAGGGGATACTCCAACCCTAG
Found at i:913470 original size:78 final size:78
Alignment explanation
Indices: 913382--913673 Score: 268
Period size: 78 Copynumber: 3.7 Consensus size: 78
913372 ATTAATATTG
* * **
913382 TGAAAGTAAAAACAAGGTTGGAGTATCCCCTCAGAAAGGATTGGATTGGAGTATCCCTTATGGTG
1 TGAAA-TAAAAACAAGGTTGGAGTATCCCCTCAGAAAGGATGGGGTTGGAGTATCCCCCATGGTG
*
913447 AAAAATTGA-ATTT
65 AAAAATCGAGATTT
** * * * * *
913460 TAGAAATAAAAA-TGGAGTTGGAGTATCTCCTC-GAAAATGATAGGTTTGGAGTATCCCCGATGG
1 T-GAAATAAAAACAAG-GTTGGAGTATCCCCTCAG-AAAGGATGGGGTTGGAGTATCCCCCATGG
*
913523 TGAAAAATCAAGATTT
63 TGAAAAATCGAGATTT
* * * *** *
913539 TGGAAGTAAAACCAAGGTTGGAGTGTTTTCTCA-AAAGGATGGGGTTGAAGTATCCCCCATGGTG
1 T-GAAATAAAAACAAGGTTGGAGTATCCCCTCAGAAAGGATGGGGTTGGAGTATCCCCCATGGTG
*
913603 AAAAATCGATATTT
65 AAAAATCGAGATTT
* * ** *
913617 TGAAAATAAAAACGAGGTTAGAGTATCCCCTTGGAAATGATGGGGTTGGAGTATCCC
1 TG-AAATAAAAACAAGGTTGGAGTATCCCCTCAGAAAGGATGGGGTTGGAGTATCCC
913674 AATGATTAAA
Statistics
Matches: 169, Mismatches: 37, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
77 3 0.02
78 114 0.67
79 51 0.30
80 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (78 bp):
TGAAATAAAAACAAGGTTGGAGTATCCCCTCAGAAAGGATGGGGTTGGAGTATCCCCCATGGTGA
AAAATCGAGATTT
Found at i:913556 original size:157 final size:157
Alignment explanation
Indices: 913311--913673 Score: 369
Period size: 157 Copynumber: 2.3 Consensus size: 157
913301 ACTTTTGGTG
* * * * * * * *
913311 AAAATCGAGGTTTGAGTAT-CCCTCGAAGATGGTGGGGTTAGG-GTAT-CCCTAAGATGAAAATA
1 AAAAACGAGGTTAGAGTATCCCCTCGAAAATGATAGGGTT-GGAGTATCCCCGATGGTGAAAA-A
* * * * * *
913373 TTAATATTGTGAAAGTAAAAACAAGGTTGGAGTATCCCCTCAGAAAGGATTGGATTGGAGTATCC
64 TCAAGATTTTGGAAGTAAAAACAAGGTTGGAGTATCCCCTCA-AAAGGATGGGATTGAAGTATCC
** *
913438 CTTATGGTGAAAAATTGA-ATTTT-AGAAAT
128 CCCATGGTGAAAAATCGATATTTTGA-AAAT
* * * *
913467 AAAAATG-GAGTTGGAGTATCTCCTCGAAAATGATAGGTTTGGAGTATCCCCGATGGTGAAAAAT
1 AAAAACGAG-GTTAGAGTATCCCCTCGAAAATGATAGGGTTGGAGTATCCCCGATGGTGAAAAAT
* * *** *
913531 CAAGATTTTGGAAGTAAAACCAAGGTTGGAGTGTTTTCTCAAAAGGATGGGGTTGAAGTATCCCC
65 CAAGATTTTGGAAGTAAAAACAAGGTTGGAGTATCCCCTCAAAAGGATGGGATTGAAGTATCCCC
913596 CATGGTGAAAAATCGATATTTTGAAAAT
130 CATGGTGAAAAATCGATATTTTGAAAAT
* * *
913624 AAAAACGAGGTTAGAGTATCCCCTTGGAAATGATGGGGTTGGAGTATCCC
1 AAAAACGAGGTTAGAGTATCCCCTCGAAAATGATAGGGTTGGAGTATCCC
913674 AATGATTAAA
Statistics
Matches: 167, Mismatches: 33, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
155 1 0.01
156 50 0.30
157 103 0.62
158 13 0.08
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (157 bp):
AAAAACGAGGTTAGAGTATCCCCTCGAAAATGATAGGGTTGGAGTATCCCCGATGGTGAAAAATC
AAGATTTTGGAAGTAAAAACAAGGTTGGAGTATCCCCTCAAAAGGATGGGATTGAAGTATCCCCC
ATGGTGAAAAATCGATATTTTGAAAAT
Found at i:913685 original size:78 final size:78
Alignment explanation
Indices: 913311--913691 Score: 251
Period size: 78 Copynumber: 4.9 Consensus size: 78
913301 ACTTTTGGTG
* * * *
913311 AAAATCGAGGTTTGAGTAT-CCC-TCGAAGATGGTGGGGTTAGG-GTATCCCTAA-GATGAAAAT
1 AAAAACGAGGTTGGAGTATCCCCTTCGAA-ATGATGGGGTT-GGAGTATCCC-AATGGTGAAAA-
* * *
913372 ATTAATATTGTGAAAGT
62 ATCAATATTTTGAAAAT
* * * * *
913389 AAAAACAAGGTTGGAGTATCCCC-TCAGAAAGGATTGGATTGGAGTATCCCTTATGGTGAAAAAT
1 AAAAACGAGGTTGGAGTATCCCCTTC-GAAATGATGGGGTTGGAGTATCCC-AATGGTGAAAAAT
**
913453 TGA-ATTTT-AGAAAT
64 CAATATTTTGA-AAAT
* * * * *
913467 AAAAATG-GAGTTGGAGTATCTCC-TCGAAAATGATAGGTTTGGAGTATCCCCGATGGTGAAAAA
1 AAAAACGAG-GTTGGAGTATCCCCTTCG-AAATGATGGGGTTGGAGTAT-CCCAATGGTGAAAAA
* * *
913530 TCAAGATTTTGGAAGT
63 TCAATATTTTGAAAAT
* * * *** * * * *
913546 AAAACCAAGGTTGGAGTGTTTTC-TCAAAAGGATGGGGTTGAAGTATCCCCCATGGTGAAAAATC
1 AAAAACGAGGTTGGAGTATCCCCTTCGAAATGATGGGGTTGGAGTAT-CCCAATGGTGAAAAATC
*
913610 GATATTTTGAAAAT
65 AATATTTTGAAAAT
* * * *
913624 AAAAACGAGGTTAGAGTATCCCCTTGGAAATGATGGGGTTGGAGTATCCCAATGATTAAAAATTC
1 AAAAACGAGGTTGGAGTATCCCCTTCGAAATGATGGGGTTGGAGTATCCCAATGGTGAAAAA-TC
913689 AAT
65 AAT
913692 GCTTTTGGAA
Statistics
Matches: 236, Mismatches: 54, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
77 3 0.01
78 146 0.62
79 76 0.32
80 11 0.05
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (78 bp):
AAAAACGAGGTTGGAGTATCCCCTTCGAAATGATGGGGTTGGAGTATCCCAATGGTGAAAAATCA
ATATTTTGAAAAT
Found at i:916066 original size:52 final size:52
Alignment explanation
Indices: 915995--916127 Score: 176
Period size: 52 Copynumber: 2.5 Consensus size: 52
915985 GCATGTACCG
* *
915995 ATACATTGAAGAATATATCGATACATTTGGGTCAAAAAACCATAATGTATCA
1 ATACATTGAAGAATGTATCGATACATTTGGGTCAAAAAACCAGAATGTATCA
* * * **
916047 ATACAATGAAGAATGTATCGATACATTTGGGTCAACAACCCAGAATGTATTG
1 ATACATTGAAGAATGTATCGATACATTTGGGTCAAAAAACCAGAATGTATCA
* *
916099 ATATATTGCAAGCATGTATCGATACATTT
1 ATACATTG-AAGAATGTATCGATACATTT
916128 ACTTATGTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
52 51 0.73
53 19 0.27
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (52 bp):
ATACATTGAAGAATGTATCGATACATTTGGGTCAAAAAACCAGAATGTATCA
Found at i:917128 original size:17 final size:16
Alignment explanation
Indices: 917081--917136 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
917071 GGATTTTCAA
*
917081 AAAAAAAAACAAAAAC
1 AAAAAAAAAGAAAAAC
*
917097 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAC
*
917113 AAAAAAAGAAGGAAAAAT
1 AAAAAAA-AA-GAAAAAC
917131 AAAAAA
1 AAAAAA
917137 TTCTTATGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
16 21 0.60
17 2 0.06
18 12 0.34
ACGTcount: A:0.86, C:0.04, G:0.09, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAC
Found at i:917483 original size:21 final size:21
Alignment explanation
Indices: 917458--917498 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
917448 TAGAAAAACA
*
917458 AAAAAAAGAGAAAAAATGAAAG
1 AAAAAAAG-CAAAAAATGAAAG
*
917480 AAAAAAAGCATAAAATGAA
1 AAAAAAAGCAAAAAATGAA
917499 TAAAAAGTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (21 bp):
AAAAAAAGCAAAAAATGAAAG
Found at i:918325 original size:111 final size:110
Alignment explanation
Indices: 918049--918351 Score: 351
Period size: 111 Copynumber: 2.7 Consensus size: 110
918039 AACTTGGAGG
* *
918049 AACATCAAATTTGTCTGATTTTCGAAGAAATTCATACTTTATACATTTTGATCCATTTGTGCCTA
1 AACATCAAATTTGTCTGATTTTCGAAGAAATTCATATTTTATACA--TTGATCCATTCGTGCCTA
* ** * * *
918114 GAAAAATGGGGCACATATCCTATGAGTTTTGAAATTTTTAATCCCAAC
64 GGAAAAT-GGGCATGTATCCTATCACTTTTGAAAATTTTAATCCCAAC
* * * *
918162 AACATCAAATTTGCCTAATTTTCGAA-AAACTCATATTTTATACAACTTGATCCATTCATGCCTA
1 AACATCAAATTTGTCTGATTTTCGAAGAAATTCATATTTTATAC-A-TTGATCCATTCGTGCCTA
* * *
918226 GGAAAATAGGGCATGTTTCTTATCACTTTTGAAAATTTTGAT-CCAAC
64 GGAAAAT-GGGCATGTATCCTATCACTTTTGAAAATTTTAATCCCAAC
* *
918273 AACATCAAATTTATCTGATTTTC-AAGAAATTCATATTTTATACATTCCGATCCATTCGTGCTTA
1 AACATCAAATTTGTCTGATTTTCGAAGAAATTCATATTTTATACATT--GATCCATTCGTGCCTA
918337 GGAAAATGAGGCATG
64 GGAAAATG-GGCATG
918352 CACCCAATTA
Statistics
Matches: 162, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
109 2 0.01
110 4 0.02
111 68 0.42
112 63 0.39
113 25 0.15
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (110 bp):
AACATCAAATTTGTCTGATTTTCGAAGAAATTCATATTTTATACATTGATCCATTCGTGCCTAGG
AAAATGGGCATGTATCCTATCACTTTTGAAAATTTTAATCCCAAC
Found at i:927805 original size:92 final size:90
Alignment explanation
Indices: 927588--928333 Score: 599
Period size: 92 Copynumber: 8.0 Consensus size: 90
927578 AATTCTTCAA
* * * *
927588 ATTTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCTACGACTTAGTGGCATCCT
1 ATTTTTTCCCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTTAGTGGCAT-CT
* *
927653 TTTCTTCGAAGTCCACGACTCAGTGGC
65 CTTC-TCAAAGTCCACGACTCAGTGGC
* * * *
927680 ATCTTTTTTCTTCAAAGTCCACGACTTAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCA
1 A--TTTTTTC-CCAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACGACTTAGTGGCA
** *
927745 TCT-TGTC-CAAAAGTCCGTGACTTAGTGGC
62 TCTCT-TCTC-AAAGTCCACGACTCAGTGGC
* * *
927774 ATTTTTTCGCCAAAGTCCACGACTCAGTGGCAATCTCTTTTCAAAGTCCACAACTCAGTGGCATC
1 ATTTTTTC-CCAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACGACTTAGTGGCATC
* * *
927839 TCTTCCCAAAATCCATGACTCAGTGGC
64 TCTTCTCAAAGTCCACGACTCAGTGGC
* * * * *
927866 ATCTCTTTTCTCAAAGTCCACAACTTAGTGGCATCTTTTTTCTTCAAAGTCCATGACTTAGTGGC
1 AT-T-TTTTCCCAAAGTCCACGACTCAGTGGCATC--TCTTC-TCAAAGTCCACGACTTAGTGGC
*
927931 AATCTCTTCTCAAAGCCCACGACTCAGTGGC
61 -ATCTCTTCTCAAAGTCCACGACTCAGTGGC
* * * * * *
927962 ATCTTGTCCTAAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAATCCACGACTTAGTGGCAATC
1 ATTTTTTCCCAAAGTCCACGACTCAGTGGCATCTCTTCT-CAAAGTCCACGACTTAGTGGC-ATC
* *
928027 TCTTTTCAAAGTCCACAACTCAGTGGC
64 TCTTCTCAAAGTCCACGACTCAGTGGC
** * * * * * * *
928054 ATCTCTTTT--TGAAGTCCATGACTTAGTGGCATCCTTTTCTTCCAAGTCCATGACTCAATGGCA
1 AT-T-TTTTCCCAAAGTCCACGACTCAGTGGCAT-CTCTTC-TCAAAGTCCACGACTTAGTGGCA
* *
928117 TCTTTTTGCTTCAAAGTCCATGACTCAGTGGC
62 TC-TCTT-C-TCAAAGTCCACGACTCAGTGGC
* * * * * *
928149 AATCTCTTCTCAAAGCCCACGACTCAGTGGCATCT-TGTCCCAAAGTCCACGACTCAGTGGCAT-
1 -ATTTTTTCCCAAAGTCCACGACTCAGTGGCATCTCT-TCTCAAAGTCCACGACTTAGTGGCATC
* *
928212 TTTTCCTCCAAAGTCTACGACTCAGTGGC
64 TCTT-CT-CAAAGTCCACGACTCAGTGGC
* * * * * *
928241 AATCTCTTTT--CAAAGTCCACAACTCAGTGGTATCTCTTTTCTAAGTCCACGACTCAATGGCAA
1 -AT-T-TTTTCCCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTTAGTGGC-A
* *
928304 TCTCTTCTCAAAGGCCACGACTCTGTGGC
62 TCTCTTCTCAAAGTCCACGACTCAGTGGC
928333 A
1 A
928334 CCCTTTTAAG
Statistics
Matches: 537, Mismatches: 85, Indels: 65
0.78 0.12 0.09
Matches are distributed among these distances:
91 3 0.01
92 248 0.46
93 52 0.10
94 90 0.17
95 68 0.13
96 76 0.14
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (90 bp):
ATTTTTTCCCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTTAGTGGCATCTC
TTCTCAAAGTCCACGACTCAGTGGC
Found at i:927978 original size:218 final size:218
Alignment explanation
Indices: 927591--928333 Score: 1096
Period size: 218 Copynumber: 3.4 Consensus size: 218
927581 TCTTCAAATT
* * * *
927591 TCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCTACGACTTAGTGGCATCCTTTT
1 TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTT
* *
927656 CTTCGAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTTAGTGGCAATCTCTT
66 CTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCATGACTTAGTGGCAATCTCTT
** * *
927721 CTCAAAGCCCACGACTCAGTGGCATCTTGTCCAAAAGTCCGTGACTTAGTGGCATTTTTTCGCCA
131 CTCAAAGCCCACGACTCAGTGGCATCTTGTCCAAAAGTCCACGACTCAGTGGCATTTTTTCTCCA
927786 AAGTCCACGACTCAGTGGCAATC
196 AAGTCCACGACTCAGTGGCAATC
* *
927809 TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAATCCATGACTCAGTGGCATCTCTTT
1 TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATC-CTTT
* *
927874 TC-TCAAAGTCCACAACTTAGTGGCATCTTTTTTCTTCAAAGTCCATGACTTAGTGGCAATCTCT
65 TCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCATGACTTAGTGGCAATCTCT
*
927938 TCTCAAAGCCCACGACTCAGTGGCATCTTGTCCTAAAGTCCACGACTCAGTGGCATTTTTTCTCC
130 TCTCAAAGCCCACGACTCAGTGGCATCTTGTCCAAAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
928003 AAAATCCACGACTTAGTGGCAATC
195 AAAGTCCACGACTCAGTGGCAATC
**** * *
928027 TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTTTTGAAGTCCATGACTTAGTGGCATCCTTTT
1 TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTT
* * * * *
928092 CTTCCAAGTCCATGACTCAATGGCATCTTTTTGCTTCAAAGTCCATGACTCAGTGGCAATCTCTT
66 CTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCATGACTTAGTGGCAATCTCTT
* *
928157 CTCAAAGCCCACGACTCAGTGGCATCTTGTCCCAAAGTCCACGACTCAGTGGCATTTTTCCTCCA
131 CTCAAAGCCCACGACTCAGTGGCATCTTGTCCAAAAGTCCACGACTCAGTGGCATTTTTTCTCCA
*
928222 AAGTCTACGACTCAGTGGCAATC
196 AAGTCCACGACTCAGTGGCAATC
* ** * * *
928245 TCTTTTCAAAGTCCACAACTCAGTGGTATCTCTTTTCTAAGTCCACGACTCAATGGCAAT-CTCT
1 TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGC-ATCCTTT
* *
928309 TC-TCAAAGGCCACGACTCTGTGGCA
65 TCTTCAAAGTCCACGACTCAGTGGCA
928334 CCCTTTTAAG
Statistics
Matches: 475, Mismatches: 47, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
217 24 0.05
218 443 0.93
219 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (218 bp):
TCTTTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTT
CTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCATGACTTAGTGGCAATCTCTT
CTCAAAGCCCACGACTCAGTGGCATCTTGTCCAAAAGTCCACGACTCAGTGGCATTTTTTCTCCA
AAGTCCACGACTCAGTGGCAATC
Found at i:928417 original size:34 final size:33
Alignment explanation
Indices: 928335--928962 Score: 482
Period size: 34 Copynumber: 19.7 Consensus size: 33
928325 TCTGTGGCAC
* * *
928335 CCTTTTAAGTCCATAACTCTGTGGCA-CATTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
** *
928367 CCTGTTTAAAACCCACAACTCCATGGCACTCTTTTT
1 CCT-TTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
* **
928403 CCTTTTAAGTCCACAACACTATGGCATC-----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * *
928431 CTTTTTAAGTCCACAACTCCGT-GCACCTTATT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
928463 CTTTTTAAAGCCCACAACTCTGTGGAACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
*
928498 CCTTTTAAGTCCACAACTCTGTGGCA------T
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
928525 CCTTTTAAATCCACAACTCTGTGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* *
928558 CCTTTTAAGTCCACAACTCCATGGCATATTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* *
928591 CTTTTTAAAGCCCACAACTCC---GCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
928623 -CTTTTCAAAGTCCACAACTCCGTGGCA-C-----
1 CCTTTT--AAGTCCACAACTCCGTGGCATCTTTTT
* * *
928651 CCTTTTAAGCCCACAACTCTGTGGCACACTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
928685 CCTTTTAAGTCCACAACTCCGTGGCA-C----T
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
*
928713 -CTTTTAAGCCCACAACT-CGTGGCATTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
*
928745 CCTTTTAAGTCCACAACTCTGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
928772 CCTTTAAAGCCCACAACTCCGTGGTATCTTTCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* ** * *
928805 CCTTTTAAGCCCACAACTTAGTGGTATCTTTCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
*
928838 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
* *
928872 CCTTTTAAGTCCACAACTCCATGGTACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
* * *
928906 CCTTTTAAGTCCACAACTCCATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
928939 CCTTTTAAGTCCACAACTCCGTGG
1 CCTTTTAAGTCCACAACTCCGTGG
928963 TACCCTTTTA
Statistics
Matches: 489, Mismatches: 60, Indels: 93
0.76 0.09 0.14
Matches are distributed among these distances:
26 7 0.01
27 86 0.18
28 21 0.04
29 6 0.01
31 7 0.01
32 32 0.07
33 150 0.31
34 156 0.32
35 16 0.03
36 8 0.02
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
Found at i:928470 original size:95 final size:94
Alignment explanation
Indices: 928329--928763 Score: 354
Period size: 95 Copynumber: 4.6 Consensus size: 94
928319 CACGACTCTG
* * * * *
928329 TGGCACCCTTTTAAGTCCATAACTCTGTGGCACATTTTCCTGTTTAAAACCCACAACTCCATGGC
1 TGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTTT-CTTTTTAAAGCCCACAACTCCATGGC
928394 ACTCTTTTTCCTTTTAAGTCCACAACACTA
65 ACTCTTTTTCCTTTTAAGTCCACAACACTA
* **
928424 TGGCATCCTTTTTAAGTCCACAACTCCGT-GCACCTTATTCTTTTTAAAGCCCACAACTCTGTGG
1 TGGCATCC-TTTTAAGTCCACAACTCTGTGGCACCTT-TTCTTTTTAAAGCCCACAACTCCATGG
* * *
928488 AACTCTTTTTCCTTTTAAGTCCACAACTCTG
64 CACTCTTTTTCCTTTTAAGTCCACAACACTA
* * *
928519 TGGCATCCTTTTAAATCCACAACTCTGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCATGGC
1 TGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTT-TTCTTTTTAAAGCCCACAACTCCATGGC
* * * * *
928583 A-TATTTTTCTTTTTAAAGCCCACAACTCCGCA
65 ACTCTTTTTCCTTTT-AAGTCCACAAC-AC-TA
**** * * **
928615 CTCTTTTTCTTTTCAAAGTCCACAACTCCGTGGCACC----C-TTTT-AAGCCCACAACTCTGTG
1 -TGGCATCCTTTT--AAGTCCACAACTCTGTGGCACCTTTTCTTTTTAAAGCCCACAACTCCATG
* * **
928674 GCACACTTTTTCCTTTTAAGTCCACAACTCCG
63 GCACTCTTTTTCCTTTTAAGTCCACAACACTA
* * * *
928706 TGGCA-CTCTTTTAAGCCCACAACTC-GTGGCATTCTTTTTCCTTTT-AAGTCCACAACTC
1 TGGCATC-CTTTTAAGTCCACAACTCTGTGGCA--CCTTTTCTTTTTAAAGCCCACAACTC
928764 TGTGGCACCC
Statistics
Matches: 273, Mismatches: 49, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
87 6 0.02
88 12 0.04
89 1 0.00
90 6 0.02
91 1 0.00
92 1 0.00
93 43 0.16
94 71 0.26
95 85 0.31
96 20 0.07
97 7 0.03
99 20 0.07
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.35
Consensus pattern (94 bp):
TGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTTTCTTTTTAAAGCCCACAACTCCATGGCA
CTCTTTTTCCTTTTAAGTCCACAACACTA
Found at i:928496 original size:61 final size:62
Alignment explanation
Indices: 928379--928497 Score: 136
Period size: 61 Copynumber: 1.9 Consensus size: 62
928369 TGTTTAAAAC
* * *
928379 CCACAACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACACTATGGCATCCTTTTTAAGT
1 CCACAACTCCATGGCACTCTTATTCCTTTTAAGCCCACAACACTATGGAATCCTTTTTAAGT
* * * *
928441 CCACAACTCCGT-GCAC-CTTATTCTTTTTAAAGCCCACAACTCTGTGGAA-CTCTTTTT
1 CCACAACTCCATGGCACTCTTATTCCTTTT-AAGCCCACAACACTATGGAATC-CTTTTT
928498 CCTTTTAAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
60 11 0.23
61 26 0.54
62 11 0.23
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.35
Consensus pattern (62 bp):
CCACAACTCCATGGCACTCTTATTCCTTTTAAGCCCACAACACTATGGAATCCTTTTTAAGT
Found at i:928529 original size:27 final size:27
Alignment explanation
Indices: 928497--929012 Score: 120
Period size: 33 Copynumber: 16.8 Consensus size: 27
928487 GAACTCTTTT
*
928497 TCCTTTTAAGTCCACAACTCTGTGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCA
* *
928524 TCCTTTTAAATCCACAACTCTGTGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCA
*
928551 CCTTGTTCCTTTTAAGTCCACAACTCCATGGCATA
1 ------TCCTTTTAAGTCCACAACTCCGTGGC--A
* * ****
928586 TTTTTCTTTTTAAAGCCCACAACTCCGCACTCTTT
1 ----TCCTTTT-AAGTCCACAACTCCG---TGGCA
*
928621 TTCTTTTCAAAGTCCACAACTCCGTGGCA
1 TCCTTTT--AAGTCCACAACTCCGTGGCA
* * *
928650 CCCTTTTAAGCCCACAACTCTGTGGCACA
1 TCCTTTTAAGTCCACAACTCCGTGG--CA
928679 CTTTTTCCTTTTAAGTCCACAACTCCGTGGCA
1 -----TCCTTTTAAGTCCACAACTCCGTGGCA
*
928711 -CTCTTTTAAGCCCACAACT-CGTGGCA
1 TC-CTTTTAAGTCCACAACTCCGTGGCA
*
928737 TTCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA
1 -------TCCTTTTAAGTCCACAACTCCGTGGCA
* * * *
928771 CCCTTTAAAGCCCACAACTCCGTGGTATCTTTC
1 TCCTTTTAAGTCCACAACTCCGTGG---C---A
* ** *
928804 TCCTTTTAAGCCCACAACTTAGTGGTATCTTTC
1 TCCTTTTAAGTCCACAACTCCGTGG---C---A
*
928837 TCCTTTTAAGCCCACAACTCCGTGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCA
* *
928864 CTCTTTTTCCTTTTAAGTCCACAACTCCATGGTACTCTTTT
1 -------TCCTTTTAAGTCCACAACTCCGTGG----C---A
*
928905 TCCTTTTAAGTCCACAACTCCATGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCA
*
928932 CCTTGTTCCTTTTAAGTCCACAACTCCGTGGTA
1 ------TCCTTTTAAGTCCACAACTCCGTGGCA
* * *
928965 CCCTTTTAAGTCTACAACTCTAG-GGCA
1 TCCTTTTAAGTCCACAACTC-CGTGGCA
*
928992 CCCTTTTAAGTCCACAACTCC
1 TCCTTTTAAGTCCACAACTCC
929013 ATGGTATCTT
Statistics
Matches: 379, Mismatches: 53, Indels: 115
0.69 0.10 0.21
Matches are distributed among these distances:
26 8 0.02
27 119 0.31
28 1 0.00
29 8 0.02
30 3 0.01
31 5 0.01
32 17 0.04
33 125 0.33
34 90 0.24
35 1 0.00
37 1 0.00
38 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (27 bp):
TCCTTTTAAGTCCACAACTCCGTGGCA
Done.