Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4121247
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 5938 characters in sequence are not A, C, G, or T
File 7 of 25
Found at i:928569 original size:60 final size:60
Alignment explanation
Indices: 928433--928998 Score: 453
Period size: 60 Copynumber: 9.0 Consensus size: 60
928423 ATGGCATCCT
* * *
928433 TTTTAAGTCCACAACTCCGTGCACCTTATTCTTTTTAAAGCCCACAACTCTGTGGAACTCTTTTT
1 TTTTAAGTCCACAACTCCGTG--GC--A-TCCTTTT-AAGCCCACAACTCTGTGGCAC-CTTTTT
928498 CC
59 CC
* ** *
928500 TTTTAAGTCCACAACTCTGTGGCATCCTTTTAAATCCACAACTCTGTGGCACCTTGTTCC
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGCCCACAACTCTGTGGCACCTTTTTCC
* * *
928560 TTTTAAGTCCACAACTCCATGGCATATTTTTCTTTTTAAAGCCCACAACTC---CGCACTCTTTT
1 TTTTAAGTCCACAACTCCGTGGC--A----TCCTTTT-AAGCCCACAACTCTGTGGCAC-CTTTT
928622 T-C
58 TCC
*
928624 TTTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACACTTTTTCC
1 TTTT--AAGTCCACAACTCCGTGGCATCCTTTTAAGCCCACAACTCTGTGGCAC-CTTTTTCC
*
928687 TTTTAAGTCCACAACTCCGTGGCA-CTCTTTTAAGCCCACAACTC-GTGGCATTCTTTTTCC
1 TTTTAAGTCCACAACTCCGTGGCATC-CTTTTAAGCCCACAACTCTGTGGCA-CCTTTTTCC
* * * * * * *
928747 TTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCCCACAACTCCGTGGTATCTTTCTCC
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGCCCACAACTCTGTGGCACCTTTTTCC
* ** * *
928807 TTTTAAGCCCACAACTTAGTGGTATCTTTCTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAGTCCACAACTCCGTGG---C---ATCCTTTTAAGCCCACAACTCTGTGGCAC-CTTTTT
928872 CC
59 CC
* * * ** *
928874 TTTTAAGTCCACAACTCCATGGTACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTT
1 TTTTAAGTCCACAACTCCGTGG----C---ATCCTTTTAAGCCCACAACTCTGTGGCACCTTTTT
928939 CC
59 CC
* * * * *
928941 TTTTAAGTCCACAACTCCGTGGTACCCTTTTAAGTCTACAACTCTAG-GGCACCCTTTT
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGCCCACAACTCT-GTGGCACCTTTTT
928999 AAGTCCACAA
Statistics
Matches: 420, Mismatches: 52, Indels: 61
0.79 0.10 0.11
Matches are distributed among these distances:
59 13 0.03
60 142 0.34
61 62 0.15
62 17 0.04
63 7 0.02
64 10 0.02
65 6 0.01
66 48 0.11
67 84 0.20
68 31 0.07
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (60 bp):
TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGCCCACAACTCTGTGGCACCTTTTTCC
Found at i:928692 original size:187 final size:184
Alignment explanation
Indices: 928318--928958 Score: 563
Period size: 187 Copynumber: 3.4 Consensus size: 184
928308 TTCTCAAAGG
* * * * **
928318 CCACGACTCTGTGGCACCCTTTTAAGTCCATAACTCTGTGGCACATT-TTCCTGTTTAAAACCCA
1 CCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCT-TTT-AAGTCCA
* * * ****
928382 CAACTCCATGGCACTCTTTTTCCTTTT-AAGTCCACAAC-AC-TATGGCATCCTTTTTAAGTCCA
64 CAACTCCATGGCA-TATTTTTCCTTTTAAAGCCCACAACTCCGTATCTTTTCC-TTTTAAGTCCA
*
928444 CAACTCCGT-GCACCTTATTCTTTTTAAAGCCCACAACTCTGTGGAACTCTTTTTCCTTTTAAGT
127 CAACTCCGTGGCACC-----C-TTTT-AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGT
*
928508 CCACAACTCTGTGGCATCCTTTTAAATCCACAACTCTGTGGCACCTTGTTCCTTTTAAGTCCACA
1 CCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAGTCCACA
* * *
928573 ACTCCATGGCATATTTTTCTTTTTAAAGCCCACAACTCCGCACTCTTTTTCTTTTCAAAGTCCAC
66 ACTCCATGGCATATTTTTCCTTTTAAAGCCCACAACTCCGTA-TCTTTTCCTTTT--AAGTCCAC
*
928638 AACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACACTTTTTCCTTTTAAGT
128 AACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGT
* * * *
928695 CCACAACTCCGTGGCA-CTCTTTTAAGCCCACAACTC-GTGGCATTCTTTTTCCTTTTAAGTCCA
1 CCACAACTCTGTGGCATC-CTTTTAAGTCCACAACTCTGTGGCA-CCTTGTTCCTTTTAAGTCCA
** * *
928758 CAACTCTGTGGC--A-----CCCTTTAAAGCCCACAACTCCGTGGTATCTTTCTCCTTTTAAGCC
64 CAACTCCATGGCATATTTTTCCTTTTAAAGCCCACAACTCC---GTATCTTT-TCCTTTTAAGTC
** * *
928816 CACAACTTAGTGGTATCTTTCTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAG
125 CACAACTCCGTGG---C--AC-CCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAG
928881 T
184 T
** * **
928882 CCACAACTCCATGGTACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAA
1 CCACAACT-C-T-GT-GGC---ATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAA
928947 GTCCACAACTCC
59 GTCCACAACTCC
928959 GTGGTACCCT
Statistics
Matches: 377, Mismatches: 45, Indels: 54
0.79 0.09 0.11
Matches are distributed among these distances:
180 19 0.05
181 15 0.04
182 5 0.01
183 8 0.02
184 1 0.00
185 1 0.00
186 8 0.02
187 145 0.38
188 16 0.04
189 29 0.08
190 48 0.13
191 11 0.03
192 3 0.01
193 16 0.04
194 46 0.12
195 6 0.02
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.35
Consensus pattern (184 bp):
CCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAGTCCACA
ACTCCATGGCATATTTTTCCTTTTAAAGCCCACAACTCCGTATCTTTTCCTTTTAAGTCCACAAC
TCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGT
Found at i:928702 original size:221 final size:208
Alignment explanation
Indices: 928318--929041 Score: 622
Period size: 221 Copynumber: 3.3 Consensus size: 208
928308 TTCTCAAAGG
* * ** * * *
928318 CCACGACTCTGTGGCACCCTTTTAAGTCCATAACTCTGTGGCACATTT-TCCTGTTTAAAACCCA
1 CCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCATATTTCT-CT-TTTTAAGCCCA
* ** *
928382 CAACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACACTATGGCATCCTTTTTAAGTCCACAA
64 CAACTCC---GCACTCTTTTT-CTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGTCCACAA
* * * *
928447 CTCCGT-GCACCTTATTCTTTTTAAAGCCCACAACTCTGTGGAACTCTTTTTCCTTTTAAGTCCA
125 CTCCGTGGCACCTTTTTCCTTTT-AAGTCCACAACTCCGTGG-AC-C-TTTTCCTTTTAAGTCCA
*
928511 CAACTCTGTGGCATCCTTTTAAAT
186 CAACTC-GTGGCATCCTTTTAAGT
*
928535 CCACAACTCTGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCATATTTTTCTTTTTAAA
1 CCACAACTCTGTGGCA-C-----CCTTTTAAGTCCACAACTCCATGGCATATTTCTCTTTTT-AA
*
928600 GCCCACAACTCCGCACTCTTTTTCTTTTCAAAGTCCACAACTCCGTGGCA-CCCTTTTAAGCCCA
59 GCCCACAACTCCGCACTCTTTTTCTTTT--AAGTCCACAACTCCGTGGCATCCCTTTTAAGTCCA
* *
928664 CAACTCTGTGGCACACTTTTTCCTTTTAAGTCCACAACTCCGTGG-CAC---T-CTTTTAAGCCC
122 CAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGAC-CTTTTCCTTTTAAGTCC
928724 ACAACTCGTGGCATTCTTTTTCCTTTTAAGT
185 ACAACTCGTGGCA-------TCCTTTTAAGT
* * * * * *
928755 CCACAACTCTGTGGCACCCTTTAAAGCCCACAACTCCGTGGTATCTTTCTCCTTTTAAGCCCACA
1 CCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCATATTTCTCTTTTTAAGCCCACA
** * * *
928820 ACTTAGTGGTA-TCTTTCTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCC
66 AC-T--CCGCACTCTTT-TTCTTTTAAGTCCACAACTCCGTGGCA-TC-----CCTTTTAAGTCC
* * *
928884 ACAACTCCATGGTACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGT
121 ACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGG-ACCTT-TTCCTTTTAAGT
* *
928949 CCACAACTCCGTGGTACCCTTTTAAGT
183 CCACAACT-CGTGGCATCCTTTTAAGT
* * * *
928976 CTACAACTCTAG-GGCACCCTTTTAAGTCCACAACTCCATGGTATCTTTCTCTTTTTAGGCCCAC
1 CCACAACTCT-GTGGCACCCTTTTAAGTCCACAACTCCATGGCATATTTCTCTTTTTAAGCCCAC
929040 AA
65 AA
929042 GTCAGTGGCA
Statistics
Matches: 421, Mismatches: 47, Indels: 74
0.78 0.09 0.14
Matches are distributed among these distances:
213 17 0.04
214 69 0.16
215 6 0.01
216 9 0.02
217 15 0.04
218 1 0.00
219 8 0.02
220 57 0.14
221 157 0.37
222 15 0.04
223 43 0.10
224 1 0.00
226 1 0.00
227 16 0.04
228 6 0.01
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (208 bp):
CCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCATATTTCTCTTTTTAAGCCCACA
ACTCCGCACTCTTTTTCTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGTCCACAACTCCGT
GGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGACCTTTTCCTTTTAAGTCCACAACTCGTGG
CATCCTTTTAAGT
Found at i:928971 original size:67 final size:66
Alignment explanation
Indices: 928772--928971 Score: 258
Period size: 67 Copynumber: 3.0 Consensus size: 66
928762 TCTGTGGCAC
* * * * **
928772 CCTTTAAAGCCCACAACTCCGTGGTATCTTTCTCCTTTTAAGCCCACAACTTAGTGGTA-TCTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCTTT-TCCTTTTAAGTCCACAACTCCGTGGTACTCTTT
*
928836 CT
65 TT
*
928838 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGTACTCTT
1 CCTTTTAAGCCCACAACTCCGTGGCAC-C-TTTTCCTTTTAAGTCCACAACTCCGTGGTACTCTT
928903 TTT
64 TTT
* * *
928906 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGTACCCTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCTT-TTCCTTTTAAGTCCACAACTCCGTGGTACTCTTT
928971 T
65 T
928972 AAGTCTACAA
Statistics
Matches: 118, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
66 26 0.22
67 58 0.49
68 34 0.29
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (66 bp):
CCTTTTAAGCCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACTCTTTT
T
Found at i:929032 original size:60 final size:58
Alignment explanation
Indices: 928872--929058 Score: 168
Period size: 60 Copynumber: 3.1 Consensus size: 58
928862 CACTCTTTTT
* *
928872 CCTTTTAAGTCCACAACTCCATGGTACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACC
1 CCTTTTAAGTCCACAACTCCATGGTA-TCTTTCT-CTTTTAAGTCCACAACT-CAGGGCA-C
* *
928934 TTGTTCCTTTTAAGTCCACAACTCCGTGGTA-C---C-CTTTTAAGTCTACAACTCTAGGGCAC
1 -----CCTTTTAAGTCCACAACTCCATGGTATCTTTCTCTTTTAAGTCCACAACTC-AGGGCAC
* * *
928993 CCTTTTAAGTCCACAACTCCATGGTATCTTTCTCTTTTTAGGCCCACAAGTCAGTGGCAC
1 CCTTTTAAGTCCACAACTCCATGGTATCTTTCTC-TTTTAAGTCCACAACTCAG-GGCAC
929053 CCTTTT
1 CCTTTT
929059 CAAAAGCCCA
Statistics
Matches: 103, Mismatches: 9, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
54 25 0.24
55 1 0.01
58 1 0.01
59 5 0.05
60 45 0.44
65 1 0.01
67 25 0.24
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (58 bp):
CCTTTTAAGTCCACAACTCCATGGTATCTTTCTCTTTTAAGTCCACAACTCAGGGCAC
Found at i:929069 original size:30 final size:29
Alignment explanation
Indices: 929034--929154 Score: 115
Period size: 29 Copynumber: 4.2 Consensus size: 29
929024 CTCTTTTTAG
929034 GCCCACAAGTCAGTGGCACCCTTTTCAAAA
1 GCCCACAAGTCAGTGGCACCC-TTTCAAAA
929064 GCCCACAAGTC-GATGGCACCCCTTTC-AAA
1 GCCCACAAGTCAG-TGGCA-CCCTTTCAAAA
* * *
929093 GCCCACAAGTTAGTAGCAACC-TTCAAAA
1 GCCCACAAGTCAGTGGCACCCTTTCAAAA
* * **
929121 GCACATAAGTTGGT-GCAACCCTTTCAAAA
1 GCCCACAAGTCAGTGGC-ACCCTTTCAAAA
929150 GCCCA
1 GCCCA
929155 GACAAGTTGG
Statistics
Matches: 77, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.06
28 19 0.25
29 29 0.38
30 21 0.27
31 3 0.04
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.19
Consensus pattern (29 bp):
GCCCACAAGTCAGTGGCACCCTTTCAAAA
Found at i:929325 original size:87 final size:88
Alignment explanation
Indices: 929185--929956 Score: 856
Period size: 87 Copynumber: 8.9 Consensus size: 88
929175 TTCTAAGTCT
* * *
929185 AATATCGCTAGCCTTGAATCAGGATATTGGCACCTTTATCTTCAAGACCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
* *
929250 AATCAGCACATTGG-ACAAGTCT
66 AATCAGCACATTGGCACAAGCCC
* * * *
929272 AATATTGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGATCAATGTTGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
* * *
929337 AATCAACCCATTGGCACAAGCCT
66 AATCAGCACATTGGCACAAGCCC
* *
929360 AATATCGCTGCCCTTGAATCAGCATATTGACACCTTGT-T-TTTAAGACCAATGTCGCTGGCCTT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGACCAATGTCGCTGGCCTT
* *
929423 GAATTAGCACATTGGCATAAGCCC
65 GAATCAGCACATTGGCACAAGCCC
* * * *
929447 AATATCGCTGACCGTGAATCAGCATATTGGCACC-TTGTCTTCAAGACCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
*
929511 AATCAGCACATTGGCACAAGTCC
66 AATCAGCACATTGGCACAAGCCC
* * *
929534 AATATCACTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTTGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
*
929599 AATCAGCCCATTGGCACAAGCCC
66 AATCAGCACATTGGCACAAGCCC
** * * *
929622 AATATCGCTGGCCTTGAATCAGCCCATTGG---C---A----TAAGCCCAATATCACTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
*
929677 AATCAGCCCATTGGCACAAGCCC
66 AATCAGCACATTGGCACAAGCCC
*
929700 AATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
* *
929764 AATCAGCACATTGGCATAGGCCC
66 AATCAGCACATTGGCACAAGCCC
* * * *
929787 AATGTCGCAGGCCTTGAATCAGCACATTGG---C---A-C---AAGTCCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
*
929842 AATCAGCACATTGGCACCTTCATCTTTAAGTCC
66 AATCAGCACATTGG------CA-C---AAGCCC
* * * * * *
929875 GATATCGTTGGCCTTAAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
*
929940 AATCAGCATATTGGCAC
66 AATCAGCACATTGGCAC
929957 CTTTGTCATC
Statistics
Matches: 583, Mismatches: 68, Indels: 64
0.82 0.10 0.09
Matches are distributed among these distances:
78 105 0.18
81 2 0.00
82 1 0.00
84 3 0.01
85 2 0.00
86 2 0.00
87 285 0.49
88 142 0.24
89 1 0.00
91 2 0.00
92 2 0.00
94 1 0.00
95 1 0.00
98 34 0.06
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (88 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
AATCAGCACATTGGCACAAGCCC
Found at i:929465 original size:39 final size:39
Alignment explanation
Indices: 929401--929857 Score: 392
Period size: 39 Copynumber: 11.0 Consensus size: 39
929391 ACCTTGTTTT
* *
929401 TAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * * *
929440 TAAGCCCAATATCGCTGACCGTGAATCAGCATATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
*
929479 CCTTGTCTTCAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 --------T-AAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * * * * *
929527 CAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTTA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A
* * *
929572 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCCCATTGGCA
1 ----TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * *
929615 CAAGCCCAATATCGCTGGCCTTGAATCAGCCCATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * *
929654 TAAGCCCAATATCACTGGCCTTGAATCAGCCCATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * *
929693 CAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
*
929732 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* *
929780 TAGGCCCAATGTCGCAGGCCTTGAATCAGCACATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* *
929819 CAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
929858 CCTTCATCTT
Statistics
Matches: 344, Mismatches: 46, Indels: 56
0.77 0.10 0.13
Matches are distributed among these distances:
39 242 0.70
42 1 0.00
43 1 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 68 0.20
49 29 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:929895 original size:49 final size:49
Alignment explanation
Indices: 929820--930056 Score: 321
Period size: 49 Copynumber: 4.8 Consensus size: 49
929810 ACATTGGCAC
* *
929820 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
* * *
929869 AAGTCCGATATCGTTGGCCTTAAATCAGCATATTGGCACCTTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
*
929918 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTT
* * *
929970 AAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
* ** * *
930019 AATTCTGATATCGTTGGCCTTGAATTAGCATATTGGCA
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
930057 TCTTTAACAT
Statistics
Matches: 164, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 118 0.72
50 1 0.01
51 1 0.01
52 44 0.27
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (49 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
Found at i:929906 original size:253 final size:247
Alignment explanation
Indices: 929185--929858 Score: 723
Period size: 253 Copynumber: 2.7 Consensus size: 247
929175 TTCTAAGTCT
* * *
929185 AATATCGCT-AGCCTTGAATCAGGATATTGGCACCTTTATCTTCAAGACCAATGTCGCTGGCCTT
1 AATATCGCTGA-CCGTGAATCAGCATATTGGCACC-TTGTCTTCAAGACCAATGTCGCTGGCCTT
* * ** * *
929249 GAATCAGCACATTGG-ACAAGTCTAATATTGCTA-GCCTTGAATCAGCATATTGGCACCTTTATC
64 GAATCAGCACATTGGCACAAGCCCAATATCAC-AGGCCTTGAATCAACACATTGG--CC--TATC
* * * * * * *
929312 TTTAAGATCAATGTTGCTGGCCTTGAATCAACCCATTGGCACAAGCCTAATATCGCTGCCCTTGA
124 --TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTAA
* * * * * *
929377 ATCAGCATATTGACACCTTGTTTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCATA
187 ATCAGCACATTGGCA---------TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCACA
929442 AGCCC
243 AGCCC
929447 AATATCGCTGACCGTGAATCAGCATATTGGCACCTTGTCTTCAAGACCAATGTCGCTGGCCTTGA
1 AATATCGCTGACCGTGAATCAGCATATTGGCACCTTGTCTTCAAGACCAATGTCGCTGGCCTTGA
* * *
929512 ATCAGCACATTGGCACAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTTATCTTT
66 ATCAGCACATTGGCACAAGCCCAATATCACAGGCCTTGAATCAACACATTGG--CC--TATC--T
* * *
929577 AAGACCAATGTTGCTGGCCTTGAATCAGCCCATTGGCACAAGCCCAATATCGCTGGCCTTGAATC
125 AAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTAAATC
* * *
929642 AGCCCATTGGCATAAGCCCAATATCACTGGCCTTGAATCAGCCCATTGGCACAAGCCC
190 AGCACATTGGCATAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCACAAGCCC
* * *
929700 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGA
1 AATATCGCTGACCGTGAATCAGCATATTGGCACCTTGTCTTCAAGACCAATGTCGCTGGCCTTGA
* * * * * *
929765 ATCAGCACATTGGCATAGGCCCAATGTCGCAGGCCTTGAATCAGCACATTGG-C-A-C-AAGTCC
66 ATCAGCACATTGGCACAAGCCCAATATCACAGGCCTTGAATCAACACATTGGCCTATCTAAGACC
929826 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
131 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
929859 CTTCATCTTT
Statistics
Matches: 374, Mismatches: 35, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
243 36 0.10
246 1 0.00
247 1 0.00
250 1 0.00
253 146 0.39
261 43 0.11
262 145 0.39
263 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (247 bp):
AATATCGCTGACCGTGAATCAGCATATTGGCACCTTGTCTTCAAGACCAATGTCGCTGGCCTTGA
ATCAGCACATTGGCACAAGCCCAATATCACAGGCCTTGAATCAACACATTGGCCTATCTAAGACC
AATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTAAATCAGCACA
TTGGCATAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCACAAGCCC
Found at i:929990 original size:52 final size:49
Alignment explanation
Indices: 929819--930152 Score: 303
Period size: 49 Copynumber: 6.7 Consensus size: 49
929809 CACATTGGCA
*
929819 CAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
929868 TAAGTCCGATATCGTTGGCCTTAAATCAGCATATTGGCACCTTCATCTT
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
929917 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTT
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTT
* *
929969 CAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * ** * * * * * *
930018 TAATTCTGATATCGTTGGCCTTGAATTAGCATATTGGCATCTTTAACATT
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC-TT
* * * ** * *
930068 CCTAAGCCCAATGTCGTTGGCCTTGTCTTAGCACATTGGCA--TTCTTCTT
1 -C-AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
930117 CAAATCTAATGTCACTGACCATGAATCAGCACATTG
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
930153 TCATTCTTCG
Statistics
Matches: 232, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
47 25 0.11
48 1 0.00
49 125 0.54
50 6 0.03
51 1 0.00
52 74 0.32
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (49 bp):
CAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:930014 original size:101 final size:100
Alignment explanation
Indices: 929820--930061 Score: 326
Period size: 101 Copynumber: 2.4 Consensus size: 100
929810 ACATTGGCAC
* * * * *
929820 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--TTCATCTTTAAGTCCGATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTCAAGTCCAATATCGC
* *
929883 TGGCCTTAAATCAGCATATTGGCACCTTCATCTTT
66 TAGCCTTAAATCAGCACATTGGCACCTTCATCTTT
*
929918 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTCAAGTCCAATGTCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCATCTTCAAGTCCAATATCG
*
929983 CTAGCCTTGAATCAGCACATTGGCACCTTCATCTTT
65 CTAGCCTTAAATCAGCACATTGGCACCTTCATCTTT
* ** * * *
930019 AATTCTGATATCGTTGGCCTTGAATTAGCATATTGGCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
930062 AACATTCCTA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
98 38 0.30
100 1 0.01
101 87 0.69
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (100 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTCAAGTCCAATATCGC
TAGCCTTAAATCAGCACATTGGCACCTTCATCTTT
Found at i:930079 original size:101 final size:101
Alignment explanation
Indices: 929820--930108 Score: 307
Period size: 101 Copynumber: 2.9 Consensus size: 101
929810 ACATTGGCAC
* * * * * * *
929820 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TT--CATCTTTAAGTCCGATATCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATCCTCAAGCCCAATGTCG
* * * *
929882 TTGGCCTTAAATCAGCATATTGGCACCTTCATCTTT
66 CTAGCCTTGAATCAGCACATTGGCACCTTCATCTTT
** * *
929918 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTCAAGTCCAATGTCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATCCTCAAGCCCAATGTCG
929983 CTAGCCTTGAATCAGCACATTGGCACCTTCATCTTT
66 CTAGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* ** * * *
930019 AATTCTGATATCGTTGGCCTTGAATTAGCATATTGGCATCTTTAACATTCCT-AAGCCCAATGTC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACA-TCCTCAAGCCCAATGTC
* * ** *
930083 GTTGGCCTTGTCTTAGCACATTGGCA
65 GCTAGCCTTGAATCAGCACATTGGCA
930109 TTCTTCTTCA
Statistics
Matches: 163, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
98 38 0.23
99 2 0.01
101 120 0.74
102 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (101 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATCCTCAAGCCCAATGTCG
CTAGCCTTGAATCAGCACATTGGCACCTTCATCTTT
Found at i:930967 original size:20 final size:20
Alignment explanation
Indices: 930942--930996 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
930932 CTACCAAGGA
930942 AATGTATCGATACATT-ATT
1 AATGTATCGATACATTGATT
930961 CAATGTATCGATACATTGATT
1 -AATGTATCGATACATTGATT
**
930982 TTTGTATCGATACAT
1 AATGTATCGATACAT
930997 GCAGGCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 29 0.91
21 3 0.09
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTGATT
Found at i:934577 original size:88 final size:88
Alignment explanation
Indices: 934410--934642 Score: 301
Period size: 88 Copynumber: 2.6 Consensus size: 88
934400 AAAACCTCAT
* * *
934410 ATTCCCAGTCATATCCCTTTA-CTCAACCACTAGATGGTATTAATGCATCACAAAGCCTAATTTC
1 ATTCCCAATCATATCCCTTTATCT-AACCACTAGATGGTATTGATGCATCACAAAGCCTAAATTC
*
934474 CTTGGGGCAGGGTGCAACCCACAC
65 CTTGGGGCAGGGTGCAACCCACAA
* * **
934498 ATTCCTAATCATATCCTCTTTATCTAATCACTAGATGGTATTGATGCATCTTAAA-CCTAAATTC
1 ATTCCCAATCATATCC-CTTTATCTAACCACTAGATGGTATTGATGCATCACAAAGCCTAAATTC
* * *
934562 CTTTGGGCGGGGTGCAGCCCACAA
65 CTTGGGGCAGGGTGCAACCCACAA
*
934586 ATTCCCAATCATATCCCCTTCATC-ACACCACTAGATGGTATTGATGCATCACAAAGC
1 ATTCCCAATCATAT-CCCTTTATCTA-ACCACTAGATGGTATTGATGCATCACAAAGC
934643 TAGTTTCCCT
Statistics
Matches: 124, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
87 1 0.01
88 87 0.70
89 34 0.27
90 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (88 bp):
ATTCCCAATCATATCCCTTTATCTAACCACTAGATGGTATTGATGCATCACAAAGCCTAAATTCC
TTGGGGCAGGGTGCAACCCACAA
Found at i:935060 original size:40 final size:40
Alignment explanation
Indices: 935016--935143 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
935006 AACCCATTGG
935016 CTTTATCGATTTCGCCCTGGTCAACCTTTTAATTGGTTGA
1 CTTTATCGATTTCGCCCTGGTCAACCTTTTAATTGGTTGA
* * **** *
935056 CTTTATC-ACTTTCGCCCTGGTAAACCCTTCTAACCCATTGG
1 CTTTATCGA-TTTCGCCCTGGTCAA-CCTTTTAATTGGTTGA
* * *
935097 CTTTATTGATTTC-TCCTAGGCCAACCTTTTAATTGGTTGA
1 CTTTATCGATTTCGCCCT-GGTCAACCTTTTAATTGGTTGA
*
935137 CTATATC
1 CTTTATC
935144 ATTACCACTC
Statistics
Matches: 65, Mismatches: 19, Indels: 8
0.71 0.21 0.09
Matches are distributed among these distances:
39 1 0.02
40 39 0.60
41 24 0.37
42 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.41
Consensus pattern (40 bp):
CTTTATCGATTTCGCCCTGGTCAACCTTTTAATTGGTTGA
Found at i:935450 original size:85 final size:85
Alignment explanation
Indices: 935302--935501 Score: 240
Period size: 85 Copynumber: 2.4 Consensus size: 85
935292 GACATGTTAT
* * * * **
935302 CAGGAAAATCCTTTTATCCTTTGTTGGCTTGTCGGTTTAACCCCAATTAACTTTTATATCCTTTG
1 CAGGTAAATCCTTTTATCCTTTGTTGACTTATCAGTTTAACCCCAAGCAACTTTTATATCCTTTG
* *
935367 TTTACCTGTCAACTTAGTCT
66 TTTACCTATCAACTTAGTCC
* * **
935387 CGGGTAAATCCTTTTATCCTTTGTTGACTTATCAGTTTAATCCCGGGCAACCTTTT-TATCCTTT
1 CAGGTAAATCCTTTTATCCTTTGTTGACTTATCAGTTTAACCCCAAGCAA-CTTTTATATCCTTT
**
935451 GTTTACCTATCCTCTTAGTCC
65 GTTTACCTATCAACTTAGTCC
* *
935472 CATGTAAATCCTTTTATCTTTTGTTGACTT
1 CAGGTAAATCCTTTTATCCTTTGTTGACTT
935502 GTCGGTTCAA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
85 92 0.95
86 5 0.05
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (85 bp):
CAGGTAAATCCTTTTATCCTTTGTTGACTTATCAGTTTAACCCCAAGCAACTTTTATATCCTTTG
TTTACCTATCAACTTAGTCC
Found at i:935892 original size:20 final size:21
Alignment explanation
Indices: 935858--935896 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
935848 AGGTCAAAAC
935858 CCTAGAAAGTATCGATACAGG
1 CCTAGAAAGTATCGATACAGG
935879 CCTAGAAA-TATCGATACA
1 CCTAGAAAGTATCGATACA
935897 TATTACTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (21 bp):
CCTAGAAAGTATCGATACAGG
Found at i:936443 original size:23 final size:23
Alignment explanation
Indices: 936408--936451 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
936398 GCATTCAACC
*
936408 TTGGGTTACAATTTCTT-AAGAAT
1 TTGGGGTACAA-TTCTTGAAGAAT
*
936431 TTGGGGTATAATTCTTGAAGA
1 TTGGGGTACAATTCTTGAAGA
936452 GATTAAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (23 bp):
TTGGGGTACAATTCTTGAAGAAT
Found at i:936882 original size:65 final size:65
Alignment explanation
Indices: 936755--936974 Score: 282
Period size: 65 Copynumber: 3.4 Consensus size: 65
936745 ATAGCTTGGT
* * *
936755 CCTGGTCAACTTCTTTTCGACTTAGGTTTTGCCCT-GATCACTCTTTTGTTGACATGATGGTTTC
1 CCTGGTCAACTTCTTTTCGACTTAAGTTTAGCCCTAG-TCA-TCTTTTGTTGACGTGATGGTTTC
936819 AC
64 AC
* * * * *
936821 CTTGGTCAACTTTTTTTCAACTTAAGTTTAGCCGTAGTCATCTTTTGTTGATGTGATGGTTTCAC
1 CCTGGTCAACTTCTTTTCGACTTAAGTTTAGCCCTAGTCATCTTTTGTTGACGTGATGGTTTCAC
* * *
936886 CCTGGTCAACTTCTTTTCGACTTATGTTTAGCCCTAATCATCCTTTT-TTAACGTGATGGTTTCA
1 CCTGGTCAACTTCTTTTCGACTTAAGTTTAGCCCTAGTCAT-CTTTTGTTGACGTGATGGTTTCA
936950 C
65 C
* *
936951 CCTGGTCAATTTCTTTTAGACTTA
1 CCTGGTCAACTTCTTTTCGACTTA
936975 GGGCTAGCCT
Statistics
Matches: 134, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
65 96 0.72
66 37 0.28
67 1 0.01
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (65 bp):
CCTGGTCAACTTCTTTTCGACTTAAGTTTAGCCCTAGTCATCTTTTGTTGACGTGATGGTTTCAC
Found at i:938405 original size:20 final size:20
Alignment explanation
Indices: 938367--938406 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
938357 TAGCCTTTGA
*
938367 TCATGCATTTTCACTATGTT
1 TCATGCATTTTAACTATGTT
938387 TCATGCATTTTTAAC-ATGTT
1 TCATGCA-TTTTAACTATGTT
938407 CGGCATCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (20 bp):
TCATGCATTTTAACTATGTT
Found at i:941783 original size:165 final size:166
Alignment explanation
Indices: 941571--941964 Score: 410
Period size: 165 Copynumber: 2.4 Consensus size: 166
941561 AAAAATTTAT
* ** * * * *
941571 TTTATTTCATGAGTTACTGATTTTCTT-TTGGAATTCCTCATATTTTCAAAATACAGAGTTTTCT
1 TTTATTTCATGAATTTTTCATTTTTTTCTTGAAATTCC-CTTATTTTCAAAATAC-GAGTTTTCT
*
941635 T-CTCCACAAAT-TTTTT-CGGGAGGA-TTCACATTGGATTATAAA-TTTTAAAATTTATCAAAT
64 TACTCCACAAATATTTTTAC--GAGGATTTCACA-TGGATTA-AAATTTTTAAAATTCATCAAAT
* * * **
941695 ATTATTATTT-AATTAAATTAAATCATTTTTTCAAAATCCCA
125 ATTATCATTTAAATCAAATTAAATCAGTTTTGAAAAATCCCA
941736 TTTATTTCATGAATTTTTCATTTTTTTCTTGAAATTCCCTTATTTTCAAAATACGAAGTTTT-TT
1 TTTATTTCATGAATTTTTCATTTTTTTCTTGAAATTCCCTTATTTTCAAAATACG-AGTTTTCTT
* * ** *
941800 ACTGCATAAATATTTTTACGAGGATTTTTCATGGTTTAAAATTTTTAAAATTCATCAAATATTAT
65 ACTCCACAAATATTTTTACGAGGATTTCACATGGATTAAAATTTTTAAAATTCATCAAATATTAT
* *
941865 CATTTAAATCACATTAAATCAGTTTTGAAAAATCCCT
130 CATTTAAATCAAATTAAATCAGTTTTGAAAAATCCCA
** * * * **
941902 TTTATTTCATGAATTTTTCA-TACTTTCTTGAAATTTCTTTGTTTTTGAAATACGGAGTTTTCT
1 TTTATTTCATGAATTTTTCATTTTTTTCTTGAAATTCCCTTATTTTCAAAATAC-GAGTTTTCT
941965 ACTTCGTAAA
Statistics
Matches: 192, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
164 6 0.03
165 120 0.62
166 65 0.34
167 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.48
Consensus pattern (166 bp):
TTTATTTCATGAATTTTTCATTTTTTTCTTGAAATTCCCTTATTTTCAAAATACGAGTTTTCTTA
CTCCACAAATATTTTTACGAGGATTTCACATGGATTAAAATTTTTAAAATTCATCAAATATTATC
ATTTAAATCAAATTAAATCAGTTTTGAAAAATCCCA
Found at i:941992 original size:165 final size:164
Alignment explanation
Indices: 941677--942205 Score: 548
Period size: 165 Copynumber: 3.2 Consensus size: 164
941667 GGATTATAAA
* * ** *
941677 TTTTAAAATTTATCAAATATTATTATTT-AATTAAATTAAATCATTTTTTCAAAATCCCATTTAT
1 TTTTAAAATTCATCAAATATTATTATTTAAATCAAATTAAATCATTTTTGAAAAATCCCTTTTAT
* * * * *
941741 TTCATGAATTTTTCATTTTTTTCTTGAAATTCCCTTATTTTCAAAATACGAAGTTTTTTACTGCA
66 TTCATGAATTTTTCATTTTTTTCTTGAAATT-TCTTTTTTTCGAAATACGAAGTTTTCTACTTCA
**
941806 TAAATATTTTTACGAGGATTTTTCATGGTTTAAAAT
130 TAAATATTTTTGGGAGGATTTTTC-TGGTTTAAAAT
* * *
941842 TTTTAAAATTCATCAAATATTATCATTTAAATCACATTAAATCAGTTTTGAAAAATCCCTTTTAT
1 TTTTAAAATTCATCAAATATTATTATTTAAATCAAATTAAATCATTTTTGAAAAATCCCTTTTAT
** * * *
941907 TTCATGAATTTTTCA-TACTTTCTTGAAATTTCTTTGTTTTTGAAATACGGAGTTTTCTACTTCG
66 TTCATGAATTTTTCATTTTTTTCTTGAAATTTCTTT-TTTTCGAAATACGAAGTTTTCTACTTCA
* ** * * * *
941971 TAAATGTTAGTGGGGGGATTTTTCTTAGTTTATAAC
130 TAAATATTTTTGGGAGGATTTTTC-TGGTTTAAAAT
* * * * *
942007 TTTTAAAATTCATCAAATGTCATTATTTAATTCATAA-TAAA-CTATTTTTGAAAAATTCATTTA
1 TTTTAAAATTCATCAAATATTATTATTTAAATCA-AATTAAATC-ATTTTTGAAAAATCCCTTT-
* * * * *
942070 TTTTTC-TGAGTTTTTCATTTTTTTTCTTGAAAATCTCTTTTTTTCCGAAAAACCAAGTTTTCTA
63 TATTTCATGAATTTTTCA-TTTTTTTCTTG-AAATTTCTTTTTTT-CGAAATACGAAGTTTTCTA
* * *
942134 TTTCATAAGTATTTTTGGGAAGATTTTTCTCGGTTTAAAAT
125 CTTCATAAATATTTTTGGGAGGATTTTTCT-GGTTTAAAAT
*
942175 TTTTAAAATTCATCAAATATTGTTA-TTAAAT
1 TTTTAAAATTCATCAAATATTATTATTTAAAT
942206 TCCTATTAAA
Statistics
Matches: 294, Mismatches: 60, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
164 4 0.01
165 147 0.50
166 51 0.17
167 18 0.06
168 74 0.25
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (164 bp):
TTTTAAAATTCATCAAATATTATTATTTAAATCAAATTAAATCATTTTTGAAAAATCCCTTTTAT
TTCATGAATTTTTCATTTTTTTCTTGAAATTTCTTTTTTTCGAAATACGAAGTTTTCTACTTCAT
AAATATTTTTGGGAGGATTTTTCTGGTTTAAAAT
Found at i:942259 original size:168 final size:164
Alignment explanation
Indices: 941735--942262 Score: 462
Period size: 168 Copynumber: 3.2 Consensus size: 164
941725 TCAAAATCCC
* * * *
941735 ATTTATTTCATGAATTTTTCATTTTTTTCTTGAAATTCCCTTATTTTC-AAAATACGAAGTTTTT
1 ATTTATTTCATGAATTTTTCATTTTTTTCTTGAAAATCTCTTTTTTTCGAAAA-ACGAAGTTTTC
* **
941799 TACTGCATAAATATTTTTACGAGGATTTTTCATGGTTTAAAATTTTTAAAATTCATCAAATATTA
65 TACTTCATAAATATTTTTGGGAGGATTTTTC-TGGTTTAAAATTTTTAAAATTCATCAAATATTA
* * **
941864 TCATTTAAA-TCAC-ATTAAATCAGTTTTGAA-AAATCCCT
129 TTA-TTAAATTC-CTATTAAATTAG-TTT-AAGAAAT-ATT
** * * * *
941902 -TTTATTTCATGAATTTTTCA-TACTTTCTTG-AAATTTCTTTGTTTTTGAAATACGGAGTTTTC
1 ATTTATTTCATGAATTTTTCATTTTTTTCTTGAAAATCTCTTT-TTTTCGAAAAACGAAGTTTTC
* * ** * * * * * *
941964 TACTTCGTAAATGTTAGTGGGGGGATTTTTCTTAGTTTATAACTTTTAAAATTCATCAAATGTCA
65 TACTTCATAAATATTTTTGGGAGGATTTTTC-TGGTTTAAAATTTTTAAAATTCATCAAATATTA
* * * * ** *
942029 TTATTTAATTCATAATAAACTA-TTTTTGAAAAATT
129 TTATTAAATTCCTATTAAATTAGTTTAAGAAATATT
* *
942064 CATTTATTTTTC-TGAGTTTTTCATTTTTTTTCTTGAAAATCTCTTTTTTTCCGAAAAACCAAGT
1 -ATTTA--TTTCATGAATTTTTCA-TTTTTTTCTTGAAAATCTCTTTTTTT-CGAAAAACGAAGT
* * *
942128 TTTCTATTTCATAAGTATTTTTGGGAAGATTTTTCTCGGTTTAAAATTTTTAAAATTCATCAAAT
61 TTTCTACTTCATAAATATTTTTGGGAGGATTTTTCT-GGTTTAAAATTTTTAAAATTCATCAAAT
* *
942193 ATTGTTATTAAATTCCTATTAAATTAGTTTAAGAAATTTT
125 ATTATTATTAAATTCCTATTAAATTAGTTTAAGAAATATT
* *
942233 AATTTATTTTATGAATTTTGCATTTTTTTC
1 -ATTTATTTCATGAATTTTTCATTTTTTTC
942263 ATATAACAAA
Statistics
Matches: 276, Mismatches: 69, Indels: 32
0.73 0.18 0.08
Matches are distributed among these distances:
162 1 0.00
163 6 0.02
164 14 0.05
165 92 0.33
166 27 0.10
167 24 0.09
168 98 0.36
169 14 0.05
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (164 bp):
ATTTATTTCATGAATTTTTCATTTTTTTCTTGAAAATCTCTTTTTTTCGAAAAACGAAGTTTTCT
ACTTCATAAATATTTTTGGGAGGATTTTTCTGGTTTAAAATTTTTAAAATTCATCAAATATTATT
ATTAAATTCCTATTAAATTAGTTTAAGAAATATT
Found at i:944283 original size:146 final size:146
Alignment explanation
Indices: 944013--944293 Score: 348
Period size: 146 Copynumber: 1.9 Consensus size: 146
944003 TGTCCACGAG
* * * * * *
944013 GGTTACTAGGATACTTTTATGCCGAAGGTATACCTATAAGAGCATTTTCGTAATTTTTAAAATTG
1 GGTTACTAGGATACTTTCATGCCGAAGGGATACCCACAAGAGCATTTTCGTAACTTTTAAAATCG
* * * **
944078 AGTCCTAATTTGTCATCGGGTCACTTCTATGCTGAGGATACGTATTAGGCGTAGATTCACTTTTC
66 AATCCTAATTTGTCATCGGGTCACTTCTATGCCGAGGATACATATTACACGTAGATTCACTTTTC
944143 CTTTTATGTTCTTTAA
131 CTTTTATGTTCTTTAA
** * * **
944159 GGTTACT-GAGATACTTTCATGTTGAAGGGATACCCACAAGGGCATTTTTGTAACTTTTAGTATC
1 GGTTACTAG-GATACTTTCATGCCGAAGGGATACCCACAAGAGCATTTTCGTAACTTTTAAAATC
** * * *
944223 GAATCCTAATTTGTCATCGGGTCGTTTCTATGCCGAGGGTACATATTACATGTAGGTTCACTTTT
65 GAATCCTAATTTGTCATCGGGTCACTTCTATGCCGAGGATACATATTACACGTAGATTCACTTTT
944288 CCTTTT
130 CCTTTT
944294 TAAGTCCTTT
Statistics
Matches: 112, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
145 1 0.01
146 111 0.99
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (146 bp):
GGTTACTAGGATACTTTCATGCCGAAGGGATACCCACAAGAGCATTTTCGTAACTTTTAAAATCG
AATCCTAATTTGTCATCGGGTCACTTCTATGCCGAGGATACATATTACACGTAGATTCACTTTTC
CTTTTATGTTCTTTAA
Found at i:944332 original size:146 final size:146
Alignment explanation
Indices: 944035--944332 Score: 321
Period size: 146 Copynumber: 2.0 Consensus size: 146
944025 ACTTTTATGC
* * * * * *
944035 CGAAGGTATACCTATAAGAGCATTTTCGTAATTTTTAAAATTGAGTCCTAATTTGTCATCGGGTC
1 CGAAGGGATACCCACAAGAGCATTTTCGTAACTTTTAAAATCGAATCCTAATTTGTCATCGGGTC
* * ** * * *
944100 ACTTCTATGCTGAGGATACGTATTAGGCGTAGATTCACTTTTCCTTTTATGTTCTTTAAGGTTAC
66 ACTTCTATGCCGAGGATACATATTACACGTAGATTCACTTTTCCTTTTAAGTCCTTTAAGGGTAC
* *
944165 TGAGATACTTTCATGT
131 TGAGACACTTTCAAGT
* * * **
944181 TGAAGGGATACCCACAAGGGCATTTTTGTAACTTTTAGTATCGAATCCTAATTTGTCATCGGGTC
1 CGAAGGGATACCCACAAGAGCATTTTCGTAACTTTTAAAATCGAATCCTAATTTGTCATCGGGTC
** * * * *
944246 GTTTCTATGCCGAGGGTACATATTACATGTAGGTTCACTTTTCCTTTTTAAGTCCTTTAGGGGTA
66 ACTTCTATGCCGAGGATACATATTACACGTAGATTCACTTTTCC-TTTTAAGTCCTTTAAGGGTA
*
944311 TTGAG-CAC-TTCTAAGT
130 CTGAGACACTTTC-AAGT
944327 CGAAGG
1 CGAAGG
944333 TATCCCATAA
Statistics
Matches: 122, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
145 3 0.02
146 99 0.81
147 20 0.16
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (146 bp):
CGAAGGGATACCCACAAGAGCATTTTCGTAACTTTTAAAATCGAATCCTAATTTGTCATCGGGTC
ACTTCTATGCCGAGGATACATATTACACGTAGATTCACTTTTCCTTTTAAGTCCTTTAAGGGTAC
TGAGACACTTTCAAGT
Found at i:946385 original size:33 final size:33
Alignment explanation
Indices: 946311--946388 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 33
946301 CCAATGTTTG
* *
946311 TGGT-TGAATTCTTGGTCTTTGTTCCTAAGAGT
1 TGGTCTGAATTCTTAGTCTTTGATCCTAAGAGT
946343 TGGTC-GAATTCTTAGTCTTT-ATCCTTAAGGAGT
1 TGGTCTGAATTCTTAGTCTTTGATCC-TAA-GAGT
946376 T-GTCTGAATTCTT
1 TGGTCTGAATTCTT
946389 TGAGCATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
31 3 0.08
32 24 0.60
33 13 0.32
ACGTcount: A:0.18, C:0.14, G:0.22, T:0.46
Consensus pattern (33 bp):
TGGTCTGAATTCTTAGTCTTTGATCCTAAGAGT
Found at i:951954 original size:20 final size:20
Alignment explanation
Indices: 951929--951974 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
951919 ATTTGCCTGC
*
951929 ATGTATCGATACATTGA-ATA
1 ATGTATCGATACAATGATA-A
951949 ATGTATCGATACAATGATAA
1 ATGTATCGATACAATGATAA
951969 ATGTAT
1 ATGTAT
951975 TGAGACATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGATAA
Found at i:952972 original size:18 final size:21
Alignment explanation
Indices: 952932--952973 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 21
952922 GTGATTTATT
*
952932 TTATATTCTTGTTTGAATTTA
1 TTATATTCTTGTTTGAATATA
952953 TTATATT-TTG-TT-AATATA
1 TTATATTCTTGTTTGAATATA
952971 TTA
1 TTA
952974 ACAATGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 8 0.40
19 2 0.10
20 3 0.15
21 7 0.35
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (21 bp):
TTATATTCTTGTTTGAATATA
Found at i:954086 original size:24 final size:24
Alignment explanation
Indices: 954023--954071 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
954013 TACAAAGCGT
*
954023 AAGAATCATATGTTGAAAAACATA
1 AAGAATCACATGTTGAAAAACATA
954047 AAGAATCACATGTTGAAAAACATA
1 AAGAATCACATGTTGAAAAACATA
954071 A
1 A
954072 TGAACACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.22
Consensus pattern (24 bp):
AAGAATCACATGTTGAAAAACATA
Found at i:957966 original size:15 final size:18
Alignment explanation
Indices: 957931--957971 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
957921 TAAGATTTTA
957931 TTATTATTGATTTTATCT
1 TTATTATTGATTTTATCT
957949 TTATT-TTG-TTTTAT-T
1 TTATTATTGATTTTATCT
957964 TTATTATT
1 TTATTATT
957972 TGACTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.27
16 8 0.36
17 3 0.14
18 5 0.23
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (18 bp):
TTATTATTGATTTTATCT
Found at i:958921 original size:16 final size:16
Alignment explanation
Indices: 958876--958922 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
958866 TGAGCTTGGG
*
958876 TTTTTCGAGTTTAGAT
1 TTTTTTGAGTTTAGAT
* *
958892 TTTCTT-AGGCTTAGAT
1 TTTTTTGA-GTTTAGAT
958908 TTTTTTGAGTTTAGA
1 TTTTTTGAGTTTAGA
958923 CATTTTGGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (16 bp):
TTTTTTGAGTTTAGAT
Found at i:960993 original size:19 final size:20
Alignment explanation
Indices: 960949--960999 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
960939 CTACTAGTTT
* **
960949 CATGTATCGATACAATTGTG
1 CATGTATCGATACAAGTGAA
960969 CATGTATCGATAC-AGTGAA
1 CATGTATCGATACAAGTGAA
960988 CATGTATCGATA
1 CATGTATCGATA
961000 TAATGTATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAAGTGAA
Found at i:961365 original size:23 final size:21
Alignment explanation
Indices: 961322--961366 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
961312 GGCTCTCGTT
*
961322 AAAAAATTTTCCCTTTAATAA
1 AAAAAATTTTCCCCTTAATAA
*
961343 AAAAAATTTCTCCCCCTTGATAA
1 AAAAAATTT-T-CCCCTTAATAA
961366 A
1 A
961367 CAGTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 1 0.05
23 10 0.50
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAAAATTTTCCCCTTAATAA
Found at i:963217 original size:13 final size:13
Alignment explanation
Indices: 963199--963237 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
963189 TAGTAACCTT
963199 TGTATCGATACAA
1 TGTATCGATACAA
*
963212 TGTATCGATAAAA
1 TGTATCGATACAA
963225 TGTATCGATACAA
1 TGTATCGATACAA
963238 GAATATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:963295 original size:20 final size:21
Alignment explanation
Indices: 963265--963303 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
963255 ATCTAGGTTT
963265 TTCAGATGTATAGATACATCC
1 TTCAGATGTATAGATACATCC
*
963286 TTCA-ATGTATCGATACAT
1 TTCAGATGTATAGATACAT
963304 TCTGGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (21 bp):
TTCAGATGTATAGATACATCC
Found at i:969436 original size:13 final size:13
Alignment explanation
Indices: 969418--969460 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
969408 ACAATTCATC
969418 ATGTATCGATATA
1 ATGTATCGATATA
969431 ATGTATCGATATA
1 ATGTATCGATATA
*
969444 ATGTATCGATACA
1 ATGTATCGATATA
969457 ATGT
1 ATGT
969461 GTCATGTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (13 bp):
ATGTATCGATATA
Found at i:978637 original size:52 final size:50
Alignment explanation
Indices: 978581--978722 Score: 133
Period size: 52 Copynumber: 2.7 Consensus size: 50
978571 ATTAAATATA
* *
978581 ATTATATTAATATAATACATATAAAATAATTAAAATATAATATAATATAAAT
1 ATTAT-TTAATATAA-ATATATAAAATAATTAAAATATAAAATAATATAAAT
* * *
978633 ATTATTTAAAAATAAATATATAAAAT-TTGATAAAATATAAAATATTATAAAT
1 ATTATTT-AATATAAATATATAAAATAAT--TAAAATATAAAATAATATAAAT
* * *
978685 ATTTTTATAATATAAAATTTATAAATATAATAAAAATA
1 ATTATT-TAATAT-AAATATATAAA-ATAATTAAAATA
978723 CAGGAGTATA
Statistics
Matches: 73, Mismatches: 10, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
50 1 0.01
51 12 0.16
52 40 0.55
53 17 0.23
54 2 0.03
55 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (50 bp):
ATTATTTAATATAAATATATAAAATAATTAAAATATAAAATAATATAAAT
Found at i:978682 original size:17 final size:18
Alignment explanation
Indices: 978644--978686 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
978634 TTATTTAAAA
978644 ATAAATATATAAAATTTG
1 ATAAATATATAAAATTTG
978662 ATAAA-ATATAAAATATT-
1 ATAAATATATAAAAT-TTG
978679 ATAAATAT
1 ATAAATAT
978687 TTTTATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAAATATATAAAATTTG
Found at i:978698 original size:17 final size:15
Alignment explanation
Indices: 978650--978714 Score: 66
Period size: 17 Copynumber: 4.4 Consensus size: 15
978640 AAAAATAAAT
978650 ATATAAAATTTGATAAA
1 ATATAAAATTT-AT-AA
978667 ATATAAAATATTATAA
1 ATATAAAAT-TTATAA
*
978683 ATAT---TTTTAT-A
1 ATATAAAATTTATAA
978694 ATATAAAATTTATAA
1 ATATAAAATTTATAA
978709 ATATAA
1 ATATAA
978715 TAAAAATACA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
11 5 0.12
12 4 0.10
13 1 0.02
14 5 0.12
15 7 0.17
16 6 0.15
17 11 0.27
18 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATATAAAATTTATAA
Found at i:978712 original size:26 final size:25
Alignment explanation
Indices: 978626--978712 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 25
978616 TATAATATAA
* *
978626 TATAAATATTATTTAAAAAT-AAATA
1 TATAAATATT-TTTAAATATAAAATT
*
978651 TATAAA-ATTTGATAAAATATAAAATAT
1 TATAAATATTT--TTAAATATAAAAT-T
978678 TATAAATATTTTTATAATATAAAATT
1 TATAAATATTTTTA-AATATAAAATT
978704 TATAAATAT
1 TATAAATAT
978713 AATAAAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
23 1 0.02
24 3 0.06
25 12 0.23
26 16 0.31
27 16 0.31
28 4 0.08
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (25 bp):
TATAAATATTTTTAAATATAAAATT
Found at i:983706 original size:25 final size:27
Alignment explanation
Indices: 983672--983730 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
983662 TTTTGAGAAT
*
983672 AAATATATATAATTTTATTT-TTAATA
1 AAATATATATAATTTGATTTATTAATA
*
983698 AAATA-ATATCATTTGATTTATTAATA
1 AAATATATATAATTTGATTTATTAATA
*
983724 ATATATA
1 AAATATA
983731 AATTATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 12 0.43
26 15 0.54
27 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
AAATATATATAATTTGATTTATTAATA
Found at i:990562 original size:20 final size:20
Alignment explanation
Indices: 990537--990581 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
990527 TTTTTAAATT
* *
990537 ATATAAAAATAATATATTAA
1 ATATAAAAATAAAATAATAA
990557 ATATAAAAATAAAATAATAA
1 ATATAAAAATAAAATAATAA
990577 A-ATAA
1 ATATAA
990582 TTTTAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
ATATAAAAATAAAATAATAA
Found at i:992491 original size:27 final size:27
Alignment explanation
Indices: 992461--992524 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
992451 TAAACACTAG
992461 GAAAATAATTAAAATACGACACAACAT
1 GAAAATAATTAAAATACGACACAACAT
**
992488 GAAAATAATTAAAATACGACGTAACAT
1 GAAAATAATTAAAATACGACACAACAT
992515 GAAAAGTAAT
1 GAAAA-TAAT
992525 ACGAACATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 30 0.88
28 4 0.12
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.20
Consensus pattern (27 bp):
GAAAATAATTAAAATACGACACAACAT
Found at i:993394 original size:33 final size:33
Alignment explanation
Indices: 993337--993401 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
993327 CGTTGGGCAT
* *
993337 AATGTATCGATACAATTCTTCATGTTTCGATAC
1 AATGTATCGATACAATTCTCCATGTATCGATAC
*
993370 AATGTATTGATACAATGTC-CCATGTATCGATA
1 AATGTATCGATACAAT-TCTCCATGTATCGATA
993402 TATTTCACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
AATGTATCGATACAATTCTCCATGTATCGATAC
Found at i:993477 original size:19 final size:20
Alignment explanation
Indices: 993432--993487 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
993422 CTGCCAGTGT
*
993432 CATGTATCGATACAATAAAG
1 CATGTATCGATACAATGAAG
*
993452 TATGTATCGATACAATGAA-
1 CATGTATCGATACAATGAAG
*
993471 CATGTATAGATACAATG
1 CATGTATCGATACAATG
993488 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATGAAG
Found at i:998478 original size:40 final size:40
Alignment explanation
Indices: 998415--998511 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
998405 AAGTACCCAG
* * * *
998415 ATGTATCGATACAATCTTTAATGTATCGATGCATGTA-TGA
1 ATGTATCGATACATTCTTCAATGTATCGATACAT-TATTCA
*
998455 ATGTATCGATACATTCTTCAATGTATTGATACATTATTCA
1 ATGTATCGATACATTCTTCAATGTATCGATACATTATTCA
*
998495 ATGTATCAATACATTCT
1 ATGTATCGATACATTCT
998512 GTCTTTTTAC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (40 bp):
ATGTATCGATACATTCTTCAATGTATCGATACATTATTCA
Found at i:998508 original size:20 final size:20
Alignment explanation
Indices: 998415--998509 Score: 102
Period size: 20 Copynumber: 4.8 Consensus size: 20
998405 AAGTACCCAG
* * *
998415 ATGTATCGATACAATCTTTA
1 ATGTATCGATACATTATTCA
* *
998435 ATGTATCGATGCATGTA-TGA
1 ATGTATCGATACAT-TATTCA
*
998455 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTATTCA
*
998475 ATGTATTGATACATTATTCA
1 ATGTATCGATACATTATTCA
*
998495 ATGTATCAATACATT
1 ATGTATCGATACATT
998510 CTGTCTTTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
19 1 0.02
20 60 0.97
21 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTATTCA
Found at i:1002281 original size:79 final size:79
Alignment explanation
Indices: 1002061--1002260 Score: 241
Period size: 79 Copynumber: 2.5 Consensus size: 79
1002051 ACAACGGGGC
* * **
1002061 TGGAGTATCCTCGATTATGGAAAATCGGTG-TTCTAGAAATAAAATCGGGGTTAGAGTATCCTTT
1 TGGAGTATCCTCGATTATGAAAAATCGATGATT-TAGAAATAAAATCGGGGTTAGAGTATCCCCT
1002125 CAGAAATAACAGGGT
65 CAGAAATAACAGGGT
* *
1002140 TGGAGTATCC-CTGATTAT-AGAAAATCGAT-ATTTTGAAAATAAAATTGGGGTTAGAGTATCCC
1 TGGAGTATCCTC-GATTATGA-AAAATCGATGATTTAG-AAATAAAATCGGGGTTAGAGTATCCC
1002202 CTC-GAAAATAAC-GAGGT
63 CTCAG-AAATAACAG-GGT
*
1002219 TGGAGTATCCTCGATTGTGAAAAATCGATGATTTAGAAATAA
1 TGGAGTATCCTCGATTATGAAAAATCGATGATTTAGAAATAA
1002261 GGCCGGGGTT
Statistics
Matches: 104, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
78 5 0.05
79 92 0.88
80 7 0.07
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (79 bp):
TGGAGTATCCTCGATTATGAAAAATCGATGATTTAGAAATAAAATCGGGGTTAGAGTATCCCCTC
AGAAATAACAGGGT
Found at i:1002429 original size:28 final size:28
Alignment explanation
Indices: 1002367--1002441 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
1002357 AAATAAAATT
* *
1002367 GGGGTTGGAGTATCCATCG--GAAGTAAC
1 GGGGTTGGAGTATCC-CCGATGAAATAAC
*
1002394 GGGATTGGAGTATCCCCGATGAAATAAC
1 GGGGTTGGAGTATCCCCGATGAAATAAC
*
1002422 GGGGTTGGAGTACCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
1002442 TATGAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.05
27 14 0.34
28 25 0.61
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGATGAAATAAC
Found at i:1002516 original size:28 final size:28
Alignment explanation
Indices: 1002476--1002547 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
1002466 TATAAGGCTG
*
1002476 GGGTTGGAGTATCCCCTCA-GAAATAATA
1 GGGTTGGAGTATCCCC-CATGAAATAACA
* *
1002504 GGGTTGGAGTATCCCCGATGAAATAACG
1 GGGTTGGAGTATCCCCCATGAAATAACA
1002532 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
1002548 AATTGTGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCCATGAAATAACA
Found at i:1002677 original size:51 final size:51
Alignment explanation
Indices: 1002534--1002698 Score: 161
Period size: 51 Copynumber: 3.2 Consensus size: 51
1002524 AAATAACGGG
* * * * * *
1002534 GTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTGAAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* * ** ** * *
1002585 GTTGGAGTACCCCCGATTGCGGTAAATCAATGCTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* * *
1002636 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAGAACCGG-
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
1002686 GATTGGAGTATCC
1 G-TTGGAGTATCC
1002699 TCGAGATGAA
Statistics
Matches: 89, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
50 1 0.01
51 88 0.99
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
Found at i:1005037 original size:20 final size:19
Alignment explanation
Indices: 1005008--1005081 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
1004998 AAAATGCCTG
*
1005008 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATG-AA
* *
1005028 AATATATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
1005048 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
1005068 AATGTATCGATACA
1 AATGTATCGATACA
1005082 TCCGGGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:1009397 original size:104 final size:104
Alignment explanation
Indices: 1009209--1009406 Score: 319
Period size: 104 Copynumber: 1.9 Consensus size: 104
1009199 AATATGAAAT
*
1009209 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGT
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTACATGT
**
1009274 ATCGATACATTTCATAGTGTATCGATACATTTGGGCAAA
66 ATCGATACATAACATAGTGTATCGATACATTTGGGCAAA
1009313 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTACATGT
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTACATGT
* *
1009378 AGT-GATACA-AAGATCAGTGTATTGATACA
66 A-TCGATACATAACAT-AGTGTATCGATACA
1009407 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
103 2 0.02
104 84 0.97
105 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (104 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTACATGT
ATCGATACATAACATAGTGTATCGATACATTTGGGCAAA
Found at i:1009406 original size:52 final size:52
Alignment explanation
Indices: 1009209--1009386 Score: 322
Period size: 52 Copynumber: 3.4 Consensus size: 52
1009199 AATATGAAAT
1009209 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
1009261 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATTTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1009313 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
1009365 TTTGCCTACATGTAGT-GATACA
1 TTTGCCTGCATGTA-TCGATACA
1009387 AAGATCAGTG
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
52 121 0.99
53 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:1009486 original size:19 final size:18
Alignment explanation
Indices: 1009461--1009526 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
1009451 AGTAGCTAAT
1009461 TATGTATCGATACAACAC
1 TATGTATCGATACAACAC
1009479 TAATGTATCG--A-AACA-
1 T-ATGTATCGATACAACAC
1009494 T-TGTATCGATACAACAC
1 TATGTATCGATACAACAC
*
1009511 TTATATATCGATACAA
1 -TATGTATCGATACAA
1009527 ATCGTTGAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
13 7 0.17
15 2 0.05
16 8 0.20
17 1 0.03
18 2 0.05
19 20 0.50
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (18 bp):
TATGTATCGATACAACAC
Found at i:1010385 original size:49 final size:49
Alignment explanation
Indices: 1010221--1011080 Score: 846
Period size: 49 Copynumber: 17.8 Consensus size: 49
1010211 AAAAGGATGT
* * * * * *
1010221 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGC
1 CAATATGCTGATTCAAGGCCAGCGACA-TTGGACTTAAAGAT--GAAG-GTGC
* * ** ** *
1010274 CAATGTACTGATTCAAGGCCAATGACATTGGGTTTTAAAAATGATGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATT-GGACTT--AAA-GATGAAGGTGC
* *
1010327 CAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
1010376 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
1010425 CAATATGTTGATTCAAGGCCAGCTACATTGGACATAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
1010473 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1010522 CAATATGCTGATTCAAGGCTAGCGATATTGGACTT----A--AAGGTGA
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
1010565 CAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGA-CATGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
1010613 CAATATGCTGATTCAAGGCCAGTGATATTGGACTT-AA-A-G-A--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * ** * *
1010656 CAATGTGCTAATTCAAGTCCAGTTACATTGGACTTAAAGATAAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1010705 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
1010754 TAATATGCTGATTCAAGGTCAGCTATATTGGGCTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1010797 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1010846 CAATATGCTGATTCAAGGTCAGCGATATTGGACTTAAAGATGATAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGC
* * *
1010898 CAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1010946 CAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1010994 TAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
1011043 CAATATGCTGATTCAATGCCAACGATATTGGACTTAAA
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA
1011081 AGAAGATGCC
Statistics
Matches: 676, Mismatches: 104, Indels: 58
0.81 0.12 0.07
Matches are distributed among these distances:
43 106 0.16
44 2 0.00
45 3 0.00
46 1 0.00
47 5 0.01
48 164 0.24
49 287 0.42
50 3 0.00
52 48 0.07
53 48 0.07
54 4 0.01
55 2 0.00
56 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
Found at i:1010742 original size:92 final size:94
Alignment explanation
Indices: 1010266--1011080 Score: 746
Period size: 92 Copynumber: 8.5 Consensus size: 94
1010256 TGAAGATGAG
* * ** * *
1010266 AAGAA-TGCCAATGTACTGATTCAAGGCCA-ATGACATTGGGTTTTAAAAATGATGAAGGCGCCA
1 AAGAAGTGCCAATGTGCTGATTCAAGGCCAGCT-ACATT-GGACTT--AAA-GATAAAGGTGCCA
* * *
1010329 ATATGCTGAGTCAAGGCCAGCGATATTGGACTTAA
61 ATATGCTGATTCAAGGCCAGCTACATTGGACTT-A
* *
1010364 AGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGCCAAT
1 A-A-GAA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
* *
1010429 ATGTTGATTCAAGGCCAGCTACATTGGACATA
63 ATGCTGATTCAAGGCCAGCTACATTGGACTTA
* *
1010461 AAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
1 AA---GAAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
* * *
1010526 ATGCTGATTCAAGGCTAGCGATATTGGACTTA
63 ATGCTGATTCAAGGCCAGCTACATTGGACTTA
* * * *
1010558 AAG--GTGACAATGTGCTGATTCAAGGCCAG-TGACATTGGTCTTAAAGA-CATGGTGCCAATAT
1 AAGAAGTGCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATAAAGGTGCCAATAT
*
1010619 GCTGATTCAAGGCCAG-TGATATTGGACTTA
65 GCTGATTCAAGGCCAGCT-ACATTGGACTTA
* * * * *
1010649 AAG-A-TGCCAATGTGCTAATTCAAGTCCAGTTACATTGGACTTAAAGATAAAAGTGCCAATGTG
1 AAGAAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
1010712 CTGATTCAAGGCCAGCTACATTGGACTTA
66 CTGATTCAAGGCCAGCTACATTGGACTTA
* * * * *
1010741 AAGATAAAGGTGCTAATATGCTGATTCAAGGTCAGCTATATTGGGC-T-----TAAAGGTGCCAA
1 AAG---AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
*
1010800 TGTGCTGATTCAAGGCCAGCTACATTGGACTTA
62 TATGCTGATTCAAGGCCAGCTACATTGGACTTA
* * * * *
1010833 AAGATAAAGGTGCCAATATGCTGATTCAAGGTCAGCGATATTGGACTTAAAGATGATAAAGGCGC
1 AAG---AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A-GATAAAGGTGC
*
1010898 CAATATGCTGATTCAAGGCCAG-TGACATTGGTCTTA
59 CAATATGCTGATTCAAGGCCAGCT-ACATTGGACTTA
* * * * * * *
1010934 AAGACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGGT-GAGGTGCTAAT
1 AAG--AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
1010998 ATGCTGATTCAAGGCCAGCTACATTGGACTTAA
63 ATGCTGATTCAAGGCCAGCTACATTGGACTT-A
* * * * *
1011031 AGACGAAGGTGCCAATATGCTGATTCAATGCCAACGATATTGGACTTAAA
1 A-A-GAA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1011081 AGAAGATGCC
Statistics
Matches: 620, Mismatches: 64, Indels: 67
0.83 0.09 0.09
Matches are distributed among these distances:
91 80 0.13
92 168 0.27
93 2 0.00
94 1 0.00
96 38 0.06
97 133 0.21
98 73 0.12
99 6 0.01
100 44 0.07
101 47 0.08
102 27 0.04
103 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (94 bp):
AAGAAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
CTGATTCAAGGCCAGCTACATTGGACTTA
Found at i:1011125 original size:33 final size:33
Alignment explanation
Indices: 1011087--1011240 Score: 222
Period size: 33 Copynumber: 4.7 Consensus size: 33
1011077 TAAAAGAAGA
* *
1011087 TGCCACCAACTTGTGTGGGTTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTTGAAGAAGGT
1011120 TGCCACCGACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTTGAAGAAGGT
* * *
1011153 TGCCACTGACTTGTGTGGGCTTTAG-AG-GGGAT
1 TGCCACCGACTTGTGTGGGCTTTTGAAGAAGG-T
* *
1011185 TGCCACCAACTTGTGTGGGCTTTGGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTTGAAGAAGGT
1011218 TGCCACCGACTTGTGTGGGCTTT
1 TGCCACCGACTTGTGTGGGCTTT
1011241 GGAACAAAGG
Statistics
Matches: 108, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
31 2 0.02
32 25 0.23
33 79 0.73
34 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.31
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTTGAAGAAGGT
Found at i:1011197 original size:65 final size:65
Alignment explanation
Indices: 1011087--1011240 Score: 220
Period size: 65 Copynumber: 2.4 Consensus size: 65
1011077 TAAAAGAAGA
* * * * * *
1011087 TGCCACCAACTTGTGTGGGTTTTTGAAGAAGG-TTGCCACCGACTTGTGTGGGCTTTTGAAGAAG
1 TGCCACCGACTTGTGTGGGCTTTAG-AG-GGGATTGCCACCAACTTGTGTGGGCTTTGGAAGAAG
1011151 GT
64 GT
*
1011153 TGCCACTGACTTGTGTGGGCTTTAGAGGGGATTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGGGGATTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGT
1011218 TGCCACCGACTTGTGTGGGCTTT
1 TGCCACCGACTTGTGTGGGCTTT
1011241 GGAACAAAGG
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
64 2 0.03
65 56 0.71
66 21 0.27
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.31
Consensus pattern (65 bp):
TGCCACCGACTTGTGTGGGCTTTAGAGGGGATTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGT
Found at i:1011256 original size:98 final size:98
Alignment explanation
Indices: 1011087--1011265 Score: 288
Period size: 98 Copynumber: 1.8 Consensus size: 98
1011077 TAAAAGAAGA
* * * *
1011087 TGCCACCAACTTGTGTGGGTTTTTGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTTGAAGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAAAAGG
*
1011152 TTGCCACTGACTTGTGTGGGCTTTAGAGGGGAT
66 TTGCCACGGACTTGTGTGGGCTTTAGAGGGGAT
1011185 TGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAACAAAG
1 TGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAA-AAAG
*
1011250 G-TGCCACGGAGTTGTG
65 GTTGCCACGGACTTGTG
1011266 GACTTAAAAG
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
98 70 0.95
99 4 0.05
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (98 bp):
TGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAAAAGG
TTGCCACGGACTTGTGTGGGCTTTAGAGGGGAT
Found at i:1011265 original size:33 final size:33
Alignment explanation
Indices: 1011087--1011265 Score: 193
Period size: 33 Copynumber: 5.5 Consensus size: 33
1011077 TAAAAGAAGA
* * * *
1011087 TGCCACCAACTTGTGTGGGTTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTGGAAAAAGGT
* *
1011120 TGCCACCGACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTGGAAAAAGGT
* * **
1011153 TGCCACTGACTTGTGTGGGCTTT--AGAGGGGAT
1 TGCCACCGACTTGTGTGGGCTTTGGAAAAAGG-T
* *
1011185 TGCCACCAACTTGTGTGGGCTTTGGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTGGAAAAAGGT
1011218 TGCCACCGACTTGTGTGGGCTTTGGAACAAAGG-
1 TGCCACCGACTTGTGTGGGCTTTGGAA-AAAGGT
* *
1011251 TGCCACGGAGTTGTG
1 TGCCACCGACTTGTG
1011266 GACTTAAAAG
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
31 3 0.02
32 22 0.18
33 93 0.74
34 7 0.06
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTGGAAAAAGGT
Found at i:1011485 original size:35 final size:34
Alignment explanation
Indices: 1011241--1011482 Score: 371
Period size: 34 Copynumber: 7.1 Consensus size: 34
1011231 TGTGGGCTTT
1011241 GGAACAAAGG-TGCCACGGAGTTGTGGACTTAAAA
1 GGAAC-AAGGATGCCACGGAGTTGTGGACTTAAAA
1011275 GGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
1 GGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
* *
1011309 GGAACAAAGATGCCACGGAATTGTGGACTTAAAA
1 GGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
1011343 GGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
1 GGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
1011377 GGAACAAGGATGCCACGGAGTTGTGGACTTAAAAA
1 GGAACAAGGATGCCACGGAGTTGTGGACTT-AAAA
* *
1011412 GGAACAAAGATGCCACGGAGTTGTGGACTTAAATG
1 GGAACAAGGATGCCACGGAGTTGTGGACTTAAA-A
* **
1011447 GGTGA-AAGGGCGCCACGGAGTTGTGGACTTAAAA
1 GG-AACAAGGATGCCACGGAGTTGTGGACTTAAAA
1011481 GG
1 GG
1011483 GTGCCTCAGA
Statistics
Matches: 193, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
33 4 0.02
34 128 0.66
35 60 0.31
36 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18
Consensus pattern (34 bp):
GGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
Found at i:1011515 original size:29 final size:28
Alignment explanation
Indices: 1011458--1011540 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 28
1011448 GTGAAAGGGC
* *
1011458 GCCACGGAGTTGTGGAC-TTAAAAGGGT
1 GCCACAGAGTTGTGGACTTTAAAAGAGT
* *
1011485 GCCTCAGAGTTGTGGGCTTTAAAAAGAGT
1 GCCACAGAGTTGTGGACTTT-AAAAGAGT
1011514 GCCACAGAGTTGTGGACTTTGAAAAGA
1 GCCACAGAGTTGTGGACTTT-AAAAGA
1011541 AAAAGGTACC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 14 0.30
28 2 0.04
29 31 0.66
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (28 bp):
GCCACAGAGTTGTGGACTTTAAAAGAGT
Found at i:1011584 original size:31 final size:31
Alignment explanation
Indices: 1011506--1011814 Score: 359
Period size: 31 Copynumber: 10.1 Consensus size: 31
1011496 GTGGGCTTTA
* *
1011506 AAAAGAGTGCCACAGAGTTGTGGACTTTGAAAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG--AAG
* * *
1011540 AAAAAGGTACCACTGAGTCGTGGGCTTTGAAG
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAAG
*
1011572 AAAAGATGCCACTGAGTTGTGGACTTTG--G
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
*
1011601 AAAGAGATG-C-C--AGCCGTGGACTTTGAAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTGAAG
* *
1011629 AAAAGATGCCACTAAGTCGTGGACTTTG-GG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
*
1011659 ACAAA-ATGACACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCGTGGACTTTGAAG
1011690 AAAAGATGCCACTGAGTCGTGGACTTTGAA-
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * *
1011720 AAGAGATTGCCACTGAGTTGTGGACTTTGGAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
*
1011752 AAAAAATGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
1011783 AAAAGATGCCACTGAGTCGTGGACTTT-AAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
1011813 AA
1 AA
1011815 GGTATTTGAA
Statistics
Matches: 237, Mismatches: 25, Indels: 29
0.81 0.09 0.10
Matches are distributed among these distances:
26 12 0.05
27 5 0.02
28 6 0.03
29 6 0.03
30 41 0.17
31 137 0.58
32 7 0.03
34 18 0.08
35 5 0.02
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (31 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:1011686 original size:118 final size:123
Alignment explanation
Indices: 1011550--1011814 Score: 373
Period size: 118 Copynumber: 2.2 Consensus size: 123
1011540 AAAAAGGTAC
* * *
1011550 CACTGAGTCGTGGGCTTTGAAGAAAAGATGCCACTGAGTTGTGGACTTTGGAAAGAGA-TG-C-C
1 CACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAAAGAGATTGCCAC
* *
1011612 -AGCCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTG-GGACAAA-ATGA
66 GAGCCGTGGACTTTGAAGAAAAAATGCCACTAAGTCGTGGACTTTGAAGA-AAAGATGA
1011668 CACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAAAGAGATTGCCAC
1 CACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAAAGAGATTGCCAC
** * * *
1011733 TGAGTTGTGGACTTTGGAGAAAAAATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGC
66 -GAGCCGTGGACTTTGAAGAAAAAATGCCACTAAGTCGTGGACTTTGAAGAAAAGATGA
1011792 CACTGAGTCGTGGACTTT-AAGAA
1 CACTGAGTCGTGGACTTTGAAGAA
1011815 GGTATTTGAA
Statistics
Matches: 130, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
118 55 0.42
119 2 0.02
120 1 0.01
121 1 0.01
123 48 0.37
124 23 0.18
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (123 bp):
CACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAAAGAGATTGCCAC
GAGCCGTGGACTTTGAAGAAAAAATGCCACTAAGTCGTGGACTTTGAAGAAAAGATGA
Found at i:1013153 original size:21 final size:21
Alignment explanation
Indices: 1013132--1013180 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
1013122 GTGTGTGTGT
1013132 TTTTTTTTTG-TTTTTTTATG
1 TTTTTTTTTGATTTTTTTATG
** *
1013152 TTTACTTTTGATTTTTTTATC
1 TTTTTTTTTGATTTTTTTATG
*
1013173 ATTTTTTT
1 TTTTTTTT
1013181 AAGGGAACTC
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.10, C:0.04, G:0.06, T:0.80
Consensus pattern (21 bp):
TTTTTTTTTGATTTTTTTATG
Found at i:1019246 original size:52 final size:52
Alignment explanation
Indices: 1019171--1019296 Score: 227
Period size: 52 Copynumber: 2.4 Consensus size: 52
1019161 AATATGAAAT
1019171 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1019223 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
1019275 TTTGCCTACATGTAGT-GATACA
1 TTTGCCTGCATGTA-TCGATACA
1019297 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
52 71 0.99
53 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:1019307 original size:52 final size:52
Alignment explanation
Indices: 1019171--1019316 Score: 188
Period size: 52 Copynumber: 2.8 Consensus size: 52
1019161 AATATGAAAT
* **
1019171 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTACATGTATCGATACATAACATAGTGTATCGATACATCTGGGCAAA
* **
1019223 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTACATGTATCGATACATAACATAGTGTATCGATACATCTGGGCAAA
* *
1019275 TTTGCCTACATGTAGT-GATACA-AAGATCAGTGTATTGATACA
1 TTTGCCTACATGTA-TCGATACATAACAT-AGTGTATCGATACA
1019317 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.97
53 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (52 bp):
TTTGCCTACATGTATCGATACATAACATAGTGTATCGATACATCTGGGCAAA
Found at i:1019396 original size:19 final size:18
Alignment explanation
Indices: 1019371--1019436 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
1019361 AGTAGCTAAT
1019371 TATGTATCGATACAACAC
1 TATGTATCGATACAACAC
1019389 TAATGTATCG--A-AACA-
1 T-ATGTATCGATACAACAC
1019404 T-TGTATCGATACAACAC
1 TATGTATCGATACAACAC
*
1019421 TTATATATCGATACAA
1 -TATGTATCGATACAA
1019437 ATCGTTGAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
13 7 0.17
15 2 0.05
16 8 0.20
17 1 0.03
18 2 0.05
19 20 0.50
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (18 bp):
TATGTATCGATACAACAC
Found at i:1031372 original size:28 final size:28
Alignment explanation
Indices: 1031332--1031792 Score: 541
Period size: 28 Copynumber: 16.1 Consensus size: 28
1031322 CATTCATCCC
** * *
1031332 TTCAAAGTGCACAAGTCAGTAGCACCAT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
1031360 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
1031389 TTCAAA-CCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
1031416 TTCAAAGCCCATAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* * *
1031444 TTCAAAACCCATAAGTCAGCGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
*
1031473 TTCAAAGCCCACAAGTCAGTGGCACTTTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
*
1031502 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
1031530 TTCAAAGCCCACGCAAGTCAGTGGTACC-T
1 TTCAAAGCCCA--CAAGTCAGTGGCACCTT
*
1031559 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* *
1031587 TTCAAATCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* *
1031615 TTCAACGCCCACGCAAGTCAGTGGTACC-T
1 TTCAAAGCCCA--CAAGTCAGTGGCACCTT
*
1031644 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* * *
1031672 TTCAAATCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
1031700 TTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
* * *
1031729 TTCAAAGCCCACACGAATTAGTGACAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CTT
* *
1031761 TTCAAAGCCCACACAAGTTAGTGGCACTTT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCTT
1031791 TT
1 TT
1031793 TTTAAAAAAA
Statistics
Matches: 384, Mismatches: 34, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
27 37 0.10
28 181 0.47
29 98 0.26
30 32 0.08
31 9 0.02
32 21 0.05
33 2 0.01
34 4 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCTT
Found at i:1031496 original size:57 final size:56
Alignment explanation
Indices: 1031332--1031741 Score: 547
Period size: 57 Copynumber: 7.2 Consensus size: 56
1031322 CATTCATCCC
** * *
1031332 TTCAAAGTGCACAAGTCAGTAGCACCATTTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
* *
1031389 TTCAAA-CCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
* * * * *
1031444 TTCAAAACCCATAAGTCAGCGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTTTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
*
1031502 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACGCAAGTCAGTGGTACC-T
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGCACCTT
* *
1031559 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAATCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
* * *
1031615 TTCAACGCCCACGCAAGTCAGTGGTA-CCTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
* * *
1031672 TTCAAATCCCACAAGTTAGTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
1031729 TTCAAAGCCCACA
1 TTCAAAGCCCACA
1031742 CGAATTAGTG
Statistics
Matches: 316, Mismatches: 27, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
55 34 0.11
56 95 0.30
57 138 0.44
58 36 0.11
59 13 0.04
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (56 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
Found at i:1031619 original size:85 final size:85
Alignment explanation
Indices: 1031332--1031741 Score: 569
Period size: 85 Copynumber: 4.8 Consensus size: 85
1031322 CATTCATCCC
** * *
1031332 TTCAAAGTGCACAAGTCAGTAGCACCATTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA-C
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
*
1031396 CCACAAGTCAGTGGCACCTT
66 CCACAAGTCAGTGGCACCCT
* * * * *
1031416 TTCAAAGCCCATAAGTCAGTGGCACCTTTTCAAAACCCATAAGTCAGCGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
**
1031481 CCACAAGTCAGTGGCACTTTT
66 CCACAAGTCAGTGGCAC-CCT
*
1031502 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACGCAAGTCAGTGGTAC-C-TTTCAAA
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGCACTCTTTTCAAA
1031565 GCCCACAAGTCAGTGGCACCCT
64 GCCCACAAGTCAGTGGCACCCT
* * *
1031587 TTCAAATCCCACAAGTCAGTGGCACCCTTTCAACGCCCACGCAAGTCAGTGGTAC-C-TTTCAAA
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGCACTCTTTTCAAA
1031650 GCCCACAAGTCAGTGGCACCCT
64 GCCCACAAGTCAGTGGCACCCT
* * *
1031672 TTCAAATCCCACAAGTTAGTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
1031737 CCACA
66 CCACA
1031742 CGAATTAGTG
Statistics
Matches: 297, Mismatches: 23, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
83 12 0.04
84 56 0.19
85 153 0.52
86 64 0.22
87 1 0.00
88 11 0.04
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
CCACAAGTCAGTGGCACCCT
Found at i:1032690 original size:20 final size:20
Alignment explanation
Indices: 1032667--1032743 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
1032657 AAGTACCTAG
*
1032667 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTCTTCA
* *
1032687 ATGTATCGATACATGT-GTGA
1 ATGTATCGATACAT-TCTTCA
* *
1032707 ATGTATCAACACATTCTTCA
1 ATGTATCGATACATTCTTCA
1032727 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
1032744 GTCTTTTTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:1037023 original size:21 final size:22
Alignment explanation
Indices: 1036976--1037031 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 22
1036966 CAAAAACCCA
1036976 AAATGTATCGATAC-AATGAAT
1 AAATGTATCGATACAAATGAAT
1036997 -AATGTATCGATACAAAT-AAT
1 AAATGTATCGATACAAATGAAT
*
1037017 AAATGTATTGATACA
1 AAATGTATCGATACA
1037032 TTTATTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (22 bp):
AAATGTATCGATACAAATGAAT
Found at i:1040227 original size:20 final size:19
Alignment explanation
Indices: 1040202--1040255 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
1040192 CTACCATTGT
1040202 TTGTATCGATACATGGCAT-A
1 TTGTATCGATACAT-G-ATAA
1040222 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGAT-AA
1040242 TTGTATCGATACAT
1 TTGTATCGATACAT
1040256 TGTTCAAACG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.06
19 1 0.03
20 29 0.91
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATGATAA
Found at i:1050557 original size:3 final size:3
Alignment explanation
Indices: 1050549--1050598 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
1050539 AATTTAACAT
** *
1050549 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CAA TAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1050597 TT
1 TT
1050599 TTTTTTTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:1054560 original size:33 final size:32
Alignment explanation
Indices: 1054539--1054619 Score: 117
Period size: 33 Copynumber: 2.5 Consensus size: 32
1054529 TACTTTTCTT
1054539 CATGTATTGATACAATGTATCGATACAAGTTGC
1 CATGTATTGATACAATGTATCGATAC-AGTTGC
* *
1054572 CATGTTTTGATACAATGTATCGATACAAGGTGC
1 CATGTATTGATACAATGTATCGATAC-AGTTGC
*
1054605 CATGTATCGATACAA
1 CATGTATTGATACAA
1054620 ACAGTGGTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (32 bp):
CATGTATTGATACAATGTATCGATACAGTTGC
Found at i:1054706 original size:13 final size:13
Alignment explanation
Indices: 1054688--1054714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1054678 TACAATGAAC
1054688 ATGTATCGATACA
1 ATGTATCGATACA
1054701 ATGTATCGATACA
1 ATGTATCGATACA
1054714 A
1 A
1054715 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1057059 original size:11 final size:11
Alignment explanation
Indices: 1057045--1057082 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
1057035 GGAATTGATG
1057045 AAATTTGAGAA
1 AAATTTGAGAA
*
1057056 AAATTTGA-AG
1 AAATTTGAGAA
1057066 AAATTTGATGAA
1 AAATTTGA-GAA
1057078 AAATT
1 AAATT
1057083 GTTAAGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 9 0.39
11 8 0.35
12 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32
Consensus pattern (11 bp):
AAATTTGAGAA
Found at i:1057063 original size:21 final size:22
Alignment explanation
Indices: 1057039--1057082 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
1057029 TGATGTGGAA
*
1057039 TTGATGAAATTTGA-GAAAAAT
1 TTGAAGAAATTTGATGAAAAAT
1057060 TTGAAGAAATTTGATGAAAAAT
1 TTGAAGAAATTTGATGAAAAAT
1057082 T
1 T
1057083 GTTAAGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (22 bp):
TTGAAGAAATTTGATGAAAAAT
Found at i:1061761 original size:15 final size:15
Alignment explanation
Indices: 1061743--1061777 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
1061733 TGAGTCAACT
1061743 TCATCATTATCATCA
1 TCATCATTATCATCA
*
1061758 TCATCATTATCTTCA
1 TCATCATTATCATCA
1061773 TCATC
1 TCATC
1061778 TTTGATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (15 bp):
TCATCATTATCATCA
Found at i:1066162 original size:22 final size:22
Alignment explanation
Indices: 1066137--1066180 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1066127 TTTAATTTAT
* *
1066137 TAATTTTTATCATTAATAAATA
1 TAATTTTCATAATTAATAAATA
*
1066159 TAATTTTCATAATTAATGAATA
1 TAATTTTCATAATTAATAAATA
1066181 GATCATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATTTTCATAATTAATAAATA
Found at i:1066370 original size:55 final size:56
Alignment explanation
Indices: 1066278--1066387 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 56
1066268 GTTACATTAA
1066278 TTTAAAGAAAAAATTAATTACAATTTTTTTTAAATATAAAACTAGAGGTTAGTTCG
1 TTTAAAGAAAAAATTAATTACAATTTTTTTTAAATATAAAACTAGAGGTTAGTTCG
*
1066334 TTTACAGAAAAAATTAATTACAA-TTTTTTTAAATATAAAACTAGAGGTTAGTTC
1 TTTAAAGAAAAAATTAATTACAATTTTTTTTAAATATAAAACTAGAGGTTAGTTC
1066388 TCTAATTATT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
55 31 0.58
56 22 0.42
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (56 bp):
TTTAAAGAAAAAATTAATTACAATTTTTTTTAAATATAAAACTAGAGGTTAGTTCG
Found at i:1066466 original size:17 final size:18
Alignment explanation
Indices: 1066446--1066479 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1066436 TAATTAATGC
1066446 AATAGTAAAATT-AAGTA
1 AATAGTAAAATTCAAGTA
*
1066463 AATATTAAAATTCAAGT
1 AATAGTAAAATTCAAGT
1066480 GTTTGTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.03, G:0.09, T:0.32
Consensus pattern (18 bp):
AATAGTAAAATTCAAGTA
Found at i:1069627 original size:13 final size:13
Alignment explanation
Indices: 1069609--1069633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1069599 ATTACTCAAA
1069609 TGTATCGATACAT
1 TGTATCGATACAT
1069622 TGTATCGATACA
1 TGTATCGATACA
1069634 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1069698 original size:52 final size:52
Alignment explanation
Indices: 1069642--1069770 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
1069632 CACCGATCTT
* *
1069642 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
1069694 TGTATCGATACATGCAAACAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1069746 TGTATCGATACATGCAGATAAATTT
1 TGTATCGATACATGCAGACAAATTT
1069771 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1074862 original size:13 final size:13
Alignment explanation
Indices: 1074844--1074895 Score: 95
Period size: 13 Copynumber: 4.0 Consensus size: 13
1074834 ATAATCACCC
*
1074844 TGTATCGATACAT
1 TGTATCGATACAA
1074857 TGTATCGATACAA
1 TGTATCGATACAA
1074870 TGTATCGATACAA
1 TGTATCGATACAA
1074883 TGTATCGATACAA
1 TGTATCGATACAA
1074896 AGAAAAATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1076882 original size:15 final size:15
Alignment explanation
Indices: 1076862--1076892 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1076852 ATTTCGTTTG
*
1076862 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1076877 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1076892 G
1 G
1076893 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1086714 original size:16 final size:16
Alignment explanation
Indices: 1086693--1086728 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1086683 CCAAACACAA
*
1086693 AAAAAAAAGAAAAAAG
1 AAAAAAAACAAAAAAG
*
1086709 AAAAAAAACAAAATAG
1 AAAAAAAACAAAAAAG
1086725 AAAA
1 AAAA
1086729 TCTCGGTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.86, C:0.03, G:0.08, T:0.03
Consensus pattern (16 bp):
AAAAAAAACAAAAAAG
Found at i:1087761 original size:31 final size:31
Alignment explanation
Indices: 1087714--1088041 Score: 206
Period size: 31 Copynumber: 10.7 Consensus size: 31
1087704 ATACCTTTTT
1087714 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * * *
1087745 AAAGCCCACGAATCAGTAGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
* *
1087775 AAAGTCCACGACTTAGTGGC-ATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TC
* * * * * *
1087807 AAAGCCCACGAATCAGTGGCATTTTGTCCT-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * *
1087837 AAAGTCCACGACTCCGTGGCACCTTTTCTTCTC
1 AAAGTCCACGACTCAGTGGCA--ATCTCTTCTC
* * * * * * *
1087870 AAAGCCCGCGACTCAATGGCATTTTGTCCT-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * *
1087900 AAAGTCCACAATTCAGTGGC-ATCTCCTTCTT
1 AAAGTCCACGACTCAGTGGCAATCT-CTTCTC
*
1087931 AAAGTCCACGACTTAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * * * * *
1087962 AAAGCCCACGACTCAGTGGCATTTTGTCCTA
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * *
1087993 AAAGTCCACAATTCAGTGGC-ATCCCTT-T-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* *
1088021 TAAGTCCACAACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
1088042 TCAAAGTCCA
Statistics
Matches: 229, Mismatches: 56, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
28 18 0.08
29 5 0.02
30 62 0.27
31 90 0.39
32 36 0.16
33 18 0.08
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:1087829 original size:62 final size:61
Alignment explanation
Indices: 1087713--1087983 Score: 287
Period size: 62 Copynumber: 4.4 Consensus size: 61
1087703 AATACCTTTT
*
1087713 TAAAGTCCACGACTCAGTGGCAATCTCTTC-TCAAAGCCCACGAATCAGTAGCATTTTGT-C
1 TAAAGTCCACGACTCAGTGGC-ATCTCTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTCC
* *
1087773 TCAAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTCC
1 T-AAAGTCCACGACTCAGTGGCAT-CTCTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTCC
* * * * * *
1087836 TAAAGTCCACGACTCCGTGGCACCTTTTCTTCTCAAAGCCCGCGACTCAATGGCATTTTGTCC
1 TAAAGTCCACGACTCAGTGGCATCTCTTC-T-TCAAAGCCCACGAATCAGTGGCATTTTGTCC
* * * * * * * * *
1087899 TAAAGTCCACAATTCAGTGGCATCTCCTTCTT-AAAGTCCACGACTTAGTGGCAATCTCTTC
1 TAAAGTCCACGACTCAGTGGCATCT-CTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTCC
*
1087960 TCAAAGCCCACGACTCAGTGGCAT
1 T-AAAGTCCACGACTCAGTGGCAT
1087984 TTTGTCCTAA
Statistics
Matches: 178, Mismatches: 25, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
60 3 0.02
61 52 0.29
62 68 0.38
63 52 0.29
64 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (61 bp):
TAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTCC
Found at i:1087971 original size:125 final size:125
Alignment explanation
Indices: 1087713--1087982 Score: 300
Period size: 125 Copynumber: 2.2 Consensus size: 125
1087703 AATACCTTTT
* * * *
1087713 TAAAGTCCACGACTCAGTGGCA--ATCTCTTCTCAAAGCCCACGAATCAGTAGCATTTTGTCTCA
1 TAAAGCCCACGACTCAGTGGCACCTTTTCTTCTCAAAGCCCACGAATCAATAGCATTTTGTCTCA
* * * * *
1087776 AAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTCC
66 AAGTCCACGAATTAGTGGCATCCTCTTCTTCAAAGCCCACGAATCAGTGGCAATCTCTCC
* * * * *
1087836 TAAAGTCCACGACTCCGTGGCACCTTTTCTTCTCAAAGCCCGCGACTCAATGGCATTTTGTC-CT
1 TAAAGCCCACGACTCAGTGGCACCTTTTCTTCTCAAAGCCCACGAATCAATAGCATTTTGTCTC-
* * * *
1087900 AAAGTCCAC-AATTCAGTGGCAT-CTCCTTCTT-AAAGTCCACGACTTAGTGGCAATCTCTTC
65 AAAGTCCACGAATT-AGTGGCATCCT-CTTCTTCAAAGCCCACGAATCAGTGGCAATCTCTCC
1087960 TCAAAGCCCACGACTCAGTGGCA
1 T-AAAGCCCACGACTCAGTGGCA
1087983 TTTTGTCCTA
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
123 21 0.17
124 29 0.24
125 73 0.59
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (125 bp):
TAAAGCCCACGACTCAGTGGCACCTTTTCTTCTCAAAGCCCACGAATCAATAGCATTTTGTCTCA
AAGTCCACGAATTAGTGGCATCCTCTTCTTCAAAGCCCACGAATCAGTGGCAATCTCTCC
Found at i:1087975 original size:92 final size:92
Alignment explanation
Indices: 1087836--1088041 Score: 301
Period size: 92 Copynumber: 2.2 Consensus size: 92
1087826 CATTTTGTCC
* * * *
1087836 TAAAGTCCACGACTCCGTGGCACCTTTTCTTCTCAAAGCCCGCGACTCAATGGCATTTTGTCCT-
1 TAAAGTCCACGACTCAGTGGCA-CATCTCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCTA
1087900 AAAGTCCACAATTCAGTGGCATCTCCTTCT
65 AAAGTCCACAATTCAGTGGCATC-CCTT-T
* *
1087930 TAAAGTCCACGACTTAGTGGCA-ATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCTAA
1 TAAAGTCCACGACTCAGTGGCACATCTCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCTAA
1087994 AAGTCCACAATTCAGTGGCATCCCTTT
66 AAGTCCACAATTCAGTGGCATCCCTTT
*
1088021 T-AAGTCCACAACTCAGTGGCA
1 TAAAGTCCACGACTCAGTGGCA
1088042 TCAAAGTCCA
Statistics
Matches: 103, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
90 18 0.17
91 2 0.02
92 40 0.39
93 23 0.22
94 20 0.19
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (92 bp):
TAAAGTCCACGACTCAGTGGCACATCTCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCTAA
AAGTCCACAATTCAGTGGCATCCCTTT
Found at i:1088083 original size:50 final size:51
Alignment explanation
Indices: 1087993--1088093 Score: 141
Period size: 50 Copynumber: 2.0 Consensus size: 51
1087983 TTTTGTCCTA
* * *
1087993 AAAGTCCACAATTCAGTGGCATCCCTTTTAAGTCCACAACTCAGTGGCATC
1 AAAGTCCACAACTCAGTGGCATCCATTTTAAGCCCACAACTCAGTGGCATC
* * *
1088044 AAAGTCCACGACTCTGTGGCA-CCATTTTAAGCCCACAACTCCGTGGCATC
1 AAAGTCCACAACTCAGTGGCATCCATTTTAAGCCCACAACTCAGTGGCATC
1088094 TTTTTCCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 26 0.59
51 18 0.41
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (51 bp):
AAAGTCCACAACTCAGTGGCATCCATTTTAAGCCCACAACTCAGTGGCATC
Found at i:1088139 original size:36 final size:35
Alignment explanation
Indices: 1088068--1088321 Score: 208
Period size: 27 Copynumber: 7.7 Consensus size: 35
1088058 TGTGGCACCA
1088068 TTTTAAGCCCACAACTCCGTGGCA-TCTTTTTCCT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
*
1088102 TTTTAAAGCCCACAACTACGTGGCACTCTTTTTCCT
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1088138 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC-
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * *
1088173 TTCTAAGTCCACAACTTCGTGGCA--C-----CC-
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
*
1088200 GTTTAAGCCCACAACTCCGTGGCA--C-----CC-
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * *
1088227 TTTTAAGTCCACGACTCCGTGGCACCCTTTTTTCC-
1 TTTTAAGCCCACAACTCCGTGGCACTC-TTTTTCCT
* *
1088262 TTTAAAGCCCCCACAACTACGTGGCACTC-TTTTCC-
1 TTTTAAG--CCCACAACTCCGTGGCACTCTTTTTCCT
* *
1088297 TTTTAAGTCCACGACTCCGTGGCAC
1 TTTTAAGCCCACAACTCCGTGGCAC
1088322 CTTCTTCTAA
Statistics
Matches: 187, Mismatches: 21, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
27 46 0.25
29 1 0.01
32 1 0.01
33 15 0.08
34 22 0.12
35 42 0.22
36 44 0.24
37 16 0.09
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (35 bp):
TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
Found at i:1088195 original size:70 final size:65
Alignment explanation
Indices: 1088068--1088324 Score: 239
Period size: 70 Copynumber: 3.9 Consensus size: 65
1088058 TGTGGCACCA
* *
1088068 TTTTAAGCCCACAACTCCGTGGCATCTTTTTCCTTTTTAAAGCCCACAACTACGTGGCACTCTTT
1 TTTTAAGCCCACAACTCCGTGGCATC-TTTTCC-TTTT-AAGTCCACAACTCCGTGGCAC-CTTT
1088133 TTCC
62 TTCC
* *
1088137 TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTTCGTGGCA-C---
1 -TTTT-AAGCCCACAACTCCGTGGCA-TC-TTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTT
1088198 --CC
62 TTCC
* *
1088200 GTTTAAGCCCACAACTCCGTGGCA-C----CCTTTTAAGTCCACGACTCCGTGGCACCCTTTTTT
1 TTTTAAGCCCACAACTCCGTGGCATCTTTTCCTTTTAAGTCCACAACTCCGTGGCA-CC-TTTTT
1088260 CC
64 CC
* * *
1088262 TTTAAAGCCCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACGACTCCGTGGCACCTT
1 TTTTAAG--CCCACAACTCCGTGGCA-TCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTT
1088325 CTTCTAAAGC
Statistics
Matches: 159, Mismatches: 10, Indels: 38
0.77 0.05 0.18
Matches are distributed among these distances:
54 23 0.14
56 1 0.01
59 1 0.01
61 20 0.13
62 10 0.06
63 2 0.01
64 16 0.10
66 1 0.01
68 3 0.02
69 2 0.01
70 48 0.30
71 23 0.14
72 9 0.06
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.32
Consensus pattern (65 bp):
TTTTAAGCCCACAACTCCGTGGCATCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCC
Found at i:1088358 original size:33 final size:33
Alignment explanation
Indices: 1088315--1088426 Score: 156
Period size: 33 Copynumber: 3.4 Consensus size: 33
1088305 CCACGACTCC
**
1088315 GTGGC-ACCTTCTTCTAAAGCCCACACAAGTTA
1 GTGGCAACCTTCTTCTAAAGCCCACACAAGTCG
*
1088347 GTGGCAACCTTCTTCCAAAGCCCACACAAGTCG
1 GTGGCAACCTTCTTCTAAAGCCCACACAAGTCG
*
1088380 GTGGCAACC-ACTCTCTAAAGCCCACACAAGTCG
1 GTGGCAACCTTCT-TCTAAAGCCCACACAAGTCG
1088413 GTGGCAACCCTTCT
1 GTGGCAA-CCTTCT
1088427 AAGTCCATTG
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
32 7 0.10
33 59 0.84
34 2 0.03
35 2 0.03
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (33 bp):
GTGGCAACCTTCTTCTAAAGCCCACACAAGTCG
Found at i:1088540 original size:49 final size:48
Alignment explanation
Indices: 1088426--1088745 Score: 408
Period size: 49 Copynumber: 6.8 Consensus size: 48
1088416 GCAACCCTTC
* *
1088426 TAAGTCCATTGTAGCTGGCCTTGACTCAGCACATTGGCAC--CA---T
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTT
* * *
1088469 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-TTCATCTT
* *
1088518 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTT
* *
1088567 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTT
1088615 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTT
* *
1088658 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT-CATCTT
*
1088710 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1088746 ACATCCTTTT
Statistics
Matches: 242, Mismatches: 19, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
43 76 0.31
45 1 0.00
46 1 0.00
48 46 0.19
49 80 0.33
50 2 0.01
52 36 0.15
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTT
Found at i:1088733 original size:52 final size:55
Alignment explanation
Indices: 1088655--1089106 Score: 291
Period size: 52 Copynumber: 8.6 Consensus size: 55
1088645 ACATTGGCAC
* *
1088655 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
1088707 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * *
1088762 CTTTAAGCCCAATATCGTTGGCCGTAAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
1088827 AT
54 AT
* * * *
1088829 CTTTAAGTCCAATATTGCTGACCTTGAACCAGCACATTGGCA-CC----T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
1088878 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--C-----CTCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
1088926 CTTTAAGTCCAGTGTAGCTGGCCTTGAATCAACACATTGGCA----------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
1088969 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
1089021 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
1089076 CTTTAAGCCCAATATCGTTGGCCATGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
1089107 ACATATTGGC
Statistics
Matches: 325, Mismatches: 47, Indels: 53
0.76 0.11 0.12
Matches are distributed among these distances:
43 37 0.11
45 1 0.00
48 44 0.14
49 42 0.13
50 1 0.00
51 1 0.00
52 74 0.23
53 4 0.01
54 10 0.03
55 60 0.18
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.01
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 33 0.10
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:1088879 original size:49 final size:49
Alignment explanation
Indices: 1088823--1089055 Score: 291
Period size: 49 Copynumber: 4.8 Consensus size: 49
1088813 CTTTTCTCAT
* * * *
1088823 CTTCATCTTTAAGTCCAATATTGCTGACCTTGAACCAGCACATTGGCAC
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1088872 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1088921 C-TCACCTTTAAGTCCAGTGTAGCTGGCCTTGAATCAACACATTGGCA-
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1088968 ---C--CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCAC
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
*
1089012 CTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
1 C--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1089056 GTTGACATCC
Statistics
Matches: 159, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
43 37 0.23
45 1 0.01
48 43 0.27
49 46 0.29
50 1 0.01
52 31 0.19
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1088908 original size:116 final size:119
Alignment explanation
Indices: 1088704--1088919 Score: 258
Period size: 122 Copynumber: 1.8 Consensus size: 119
1088694 GCACCTTTTC
* * * *
1088704 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
1 CATCTTTAAGTCCAATATAGCTGACCTTGAACCAGCACATTGACATCC---TTCTCATCTTTAAG
* * *
1088769 CCCAATATCGTTGGCCGTAAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
63 CCCAATATAGCTGGCCGTAAATCAACACATTGGCATCTTTATCACTTTTCTCATCTT
* * *
1088826 CATCTTTAAGTCCAATATTGCTGACCTTGAACCAGCACATTGGCA-CC-T-TCATCTTTAAGTCC
1 CATCTTTAAGTCCAATATAGCTGACCTTGAACCAGCACATTGACATCCTTCTCATCTTTAAGCCC
* * * *
1088888 AATGTAGCTGGCCTTGAATCAGCACATTGGCA
66 AATATAGCTGGCCGTAAATCAACACATTGGCA
1088920 CCTCACCTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
116 38 0.47
117 1 0.01
121 2 0.03
122 39 0.49
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (119 bp):
CATCTTTAAGTCCAATATAGCTGACCTTGAACCAGCACATTGACATCCTTCTCATCTTTAAGCCC
AATATAGCTGGCCGTAAATCAACACATTGGCATCTTTATCACTTTTCTCATCTT
Found at i:1088971 original size:21 final size:21
Alignment explanation
Indices: 1088947--1089014 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
1088937 GTGTAGCTGG
*
1088947 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACATATTGGCA
* *
1088968 CCTTTAAGTCCAATATAGTTGG--
1 CCTTGAA-T-CAACATA-TTGGCA
*
1088990 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAACATATTGGCA
1089011 CCTT
1 CCTT
1089015 TTCCATCTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 11 0.31
22 7 0.19
23 5 0.14
24 4 0.11
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAACATATTGGCA
Found at i:1088991 original size:43 final size:43
Alignment explanation
Indices: 1088878--1089015 Score: 186
Period size: 43 Copynumber: 3.1 Consensus size: 43
1088868 GCACCTTCAT
1088878 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
* *
1088926 CTTTAAGTCCAGTGTAGCTGGCCTTGAATCAACACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1088969 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1089012 CTTT
1 CTTT
1089016 TCCATCTTTA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
43 45 0.54
48 38 0.46
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1089008 original size:91 final size:93
Alignment explanation
Indices: 1088878--1089051 Score: 262
Period size: 91 Copynumber: 1.9 Consensus size: 93
1088868 GCACCTTCAT
* *
1088878 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T-CACCTTTAAGTCCAGTGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCACCTTTAAGTCCAATGT
1088941 AGCTGGCCTTGAATCAACACATTGGCAC
66 AGCTGGCCTTGAATCAACACATTGGCAC
* * * *
1088969 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TTCCACCTTTAAGTCCAAT
1089034 GTAGCTGGCCTTGAATCA
64 GTAGCTGGCCTTGAATCA
1089052 GCACGTTGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
91 41 0.56
94 1 0.01
95 31 0.42
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (93 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCACCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAACACATTGGCAC
Found at i:1089082 original size:314 final size:314
Alignment explanation
Indices: 1088513--1089190 Score: 1196
Period size: 314 Copynumber: 2.2 Consensus size: 314
1088503 TGGCACTTTT
* * *
1088513 ATCTTTAAGACCAATGTAGCTGGCCTTG-ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 ATCTTTAAGTCCAATATTGCTGGCCTTGAAC-CAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1088577 GTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATC
65 GTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATC
*
1088642 AGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
130 AACACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1088707 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCC
195 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCC
* *
1088772 AATATCGTTGGCCGTAAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
260 AATATCGTTGGCCATAAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
*
1088827 ATCTTTAAGTCCAATATTGCTGACCTTGAACCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
1 ATCTTTAAGTCCAATATTGCTGGCCTTGAACCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
*
1088892 TAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAGTGTAGCTGGCCTTGAATCA
66 TAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
*
1088957 ACACATTGGCACCTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
131 ACACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
*
1089022 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCA
196 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCA
* *
1089087 ATATCGTTGGCCATGAATCAACATATTGGCATCTTTATTACTTTTCTCATCATC
261 ATATCGTTGGCCATAAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
* * * *
1089141 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAACATATTGGTACCTTCA
1 ATCTTTAAGTCCAATATTGCTGGCCTTGAACCAGCACATTGGCACCTTCA
1089191 GCATCTCTAA
Statistics
Matches: 346, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
314 344 0.99
315 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.34
Consensus pattern (314 bp):
ATCTTTAAGTCCAATATTGCTGGCCTTGAACCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
ACACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCA
ATATCGTTGGCCATAAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
Found at i:1090072 original size:13 final size:13
Alignment explanation
Indices: 1090054--1090078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1090044 ATTACTCAAA
1090054 TGTATCGATACAT
1 TGTATCGATACAT
1090067 TGTATCGATACA
1 TGTATCGATACA
1090079 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1090128 original size:32 final size:32
Alignment explanation
Indices: 1090087--1090162 Score: 143
Period size: 32 Copynumber: 2.4 Consensus size: 32
1090077 CACCGATCTT
*
1090087 TGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAAGCAAATTTGCCCAGA
1090119 TGTATCGATACATGCAAGCAAATTTGCCCAGA
1 TGTATCGATACATGCAAGCAAATTTGCCCAGA
1090151 TGTATCGATACA
1 TGTATCGATACA
1090163 CTATTAAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (32 bp):
TGTATCGATACATGCAAGCAAATTTGCCCAGA
Found at i:1099761 original size:6 final size:6
Alignment explanation
Indices: 1099750--1099777 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
1099740 GTAAAGCATA
1099750 ATAATT ATAATT ATAATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAA
1099778 AAATTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
ATAATT
Found at i:1105959 original size:767 final size:770
Alignment explanation
Indices: 1103749--1106585 Score: 4489
Period size: 767 Copynumber: 3.7 Consensus size: 770
1103739 AATGGTATTA
1103749 AAAGAATAAAATATACATTTAATTAA-TTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
1 AAAGAATAAAATATACATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
* **
1103813 AAAATAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGTCTTTATATTTTTTTTTTGT
66 AAAATAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATA-TTTTTTTCAGT
* *
1103878 AACTTTGAAAAGCTTGTGTTTTCAAACATTATTTTACATTTATTTATTTATCCCAATCCTCACTG
130 AACTTTGAAAAGCTTGTGTTTTCAAACCTTATTTTACACTTATTTATTTATCCCAATCCTCACTG
* *
1103943 CAGGGGCACGACGATTGACTATTGACGCATTAAATTTTAGACCATTAAGCTTTTAAGAAAAGACT
195 CAAGGGCACGACGATTGACTATTAACGCATTAAATTTTAGACCATTAAGCTTTTAAGAAAAGACT
* * *
1104008 TGTTGAGTAGATTTGTATGCCAAATTTTTTTCCCTTTTCCCCTTGCGAGCAATTTGTTAGCTCTT
260 TGTTGAGTAGATTTGTATACCAAACTTTTTTCCCTTTTCCCCTTGC--G--ATATGTTAGCTCTT
*
1104073 ACAAAGTAACTTCAAAATATATATTATAAAAATATGGTGACGTATG-TTATAAAAATATATCAAA
321 ACAAGGTAACTTCAAAATATATATTATAAAAATATGGTGACGTATGTTTA-AAAAATATATCAAA
* * *
1104137 ATTCAATTTAAAAAATAATAACAAGTTACGATAAAAAAGTGCAATTTTTTTATTAAAAATAGATA
385 ATTCAATTTAAAAAAGAATAACAAGTTACGACAAAAAAGTACAATTTTTTTATTAAAAATAGATA
*
1104202 ATGTTGTTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATGTGCTTTTAATTTAACATTT
450 ATGTTGTTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATGTACTTTTAATTTAACATTT
1104267 AATTAATTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAAT
515 AATTAATTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAAT
* * *
1104332 TTTAAATAGTA-CCATATTTGGTGTTAAACAAGCCTTTATA-TTTTTTCAGTAACTTTGGAAAGT
580 TTTAAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTAACTTTGAAAAGC
*
1104395 TTGTGTTCTCAAACCTTGTTTTCACATTTATTTGTTTATCCCAATCCCCACTGCAGGGGCACGAC
645 TTGTGTTTTCAAACCTTGTTTTCACATTTATTTGTTTATCCCAATCCCCACTGCAGGGGCACGAC
* * ** * *
1104460 GATCGACTATTTCAATCCCTTAAACCTTGTGTTCACATTTATTTTAAATAATATAAAAATT
710 GATTGACTATCTCAATCCCCCAAACCTTGTTTTTACATTTATTTTAAATAATATAAAAATT
*
1104521 AAAGAATAAAATATATATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
1 AAAGAATAAAATATACATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
* *
1104586 AAAATAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGCTTTTATATTTTTTTCAGTG
66 AAAATAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTA
* *
1104651 ACTTTAAAAAGCTTGTGTTTTCAAACCTTGTTTT--AC--ATTTATTTATCCCAATCCTCACTGC
131 ACTTTGAAAAGCTTGTGTTTTCAAACCTTATTTTACACTTATTTATTTATCCCAATCCTCACTGC
* *
1104712 AAGGGCACGGCGATTGACTATTAACGCATTAAATTTTAGACCATTAAACTTTTAAGAAAAGACTT
196 AAGGGCACGACGATTGACTATTAACGCATTAAATTTTAGACCATTAAGCTTTTAAGAAAAGACTT
* * * *
1104777 GTTGAGCAGATTTGTATACTAAACTTTTTTCCCTTTT-TCTTCTGCGATATGTTAGCTCTTACAA
261 GTTGAGTAGATTTGTATACCAAACTTTTTTCCCTTTTCCCCT-TGCGATATGTTAGCTCTTACAA
* *
1104841 GGTAACTTCAAAATATATATTATAAAAATATGGTGACGTAAGTTTTAAAAATATATCAAAATTCA
325 GGTAACTTCAAAATATATATTATAAAAATATGGTGACGTATGTTTAAAAAATATATCAAAATTCA
1104906 ATTTAAAAAAGAATAACAAGTTACGACAAAAAAAAGTACAATTTTTTTATTAAAAATAGATAATG
390 ATTTAAAAAAGAATAACAAGTTACGAC--AAAAAAGTACAATTTTTTTATTAAAAATAGATAATG
* *
1104971 TTGTTTGTCAAATATGTTTTATATAAAAATTAAATATGATATGTACTTTTAATTTAACATTTAAT
453 TTGTTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATGTACTTTTAATTTAACATTTAAT
1105036 TAATTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAATTTT
518 TAATTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAATTTT
*
1105101 AAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTAACTTTGAAAAGCTTA
583 AAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTAACTTTGAAAAGCTTG
1105166 TGTTTTCAAACCTTGTTTTCACATTTATTTGTTTATCCCAATCCCCACTGCAGGGGCACGACGAT
648 TGTTTTCAAACCTTGTTTTCACATTTATTTGTTTATCCCAATCCCCACTGCAGGGGCACGACGAT
*
1105231 TAACTATCTCAATCCCCCAAACCTTGTTTTTAACATTTATTTTAAATAATATAAAAATT
713 TGACTATCTCAATCCCCCAAACCTTGTTTTT-ACATTTATTTTAAATAATATAAAAATT
* *
1105290 AAATAATAAAATATATATTTAATT-A-TTTTTT-AAATTTAATAAAAATAATATATTAAATATAA
1 AAAGAATAAAATATACATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
*
1105352 AAAATAAATAATTTTAAATAGTATCCATATTCAGTGTTAAACAAGCCTTTATATTTTTTTCAGTA
66 AAAATAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTA
* * *
1105417 ACTTTGAAAAGCTTGTGTTTTCAAACCTTATTTTACACTTATTTGTTTATTCCAATTCTCACTG-
131 ACTTTGAAAAGCTTGTGTTTTCAAACCTTATTTTACACTTATTTATTTATCCCAATCCTCACTGC
*
1105481 -AGAGGCACGACGATTGACTATTAACGCATTAAATTTTAGACTATTAAGCTTTTAAGAAAAGACT
196 AAG-GGCACGACGATTGACTATTAACGCATTAAATTTTAGACCATTAAGCTTTTAAGAAAAGACT
* *
1105545 TGTTGAGTAGATTTGTATACCAAACTTTTTTTCCTTTTCCCCTTGCGATACGTTAGCTCTTACAA
260 TGTTGAGTAGATTTGTATACCAAACTTTTTTCCCTTTTCCCCTTGCGATATGTTAGCTCTTACAA
1105610 GGTAACTTCAAAATATATATTATAAAAATATGGTGACGTATGTTTAAAAAATATATCAAAATTCA
325 GGTAACTTCAAAATATATATTATAAAAATATGGTGACGTATGTTTAAAAAATATATCAAAATTCA
* *
1105675 ATTTAAAAAAGAATAACAAGTTACGACAAAAAAGTATATTTTTTTTATTAAAAATAGATAATGTT
390 ATTTAAAAAAGAATAACAAGTTACGACAAAAAAGTACAATTTTTTTATTAAAAATAGATAATGTT
* *
1105740 GTTTTTAAAATGTGTTTTATATAAAAATTAAATATGATATGTACTTTTGATTTAACATTTAATTA
455 GTTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATGTACTTTTAATTTAACATTTAATTA
*
1105805 ATTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAATTTTAC
520 ATTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAATTTTAA
*
1105870 ATAGTATCCATATTCGGTGTTAAACAAGCGTTTATATTTTTTTCAGTAACTTTGAAAAGCTTGTG
585 ATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTAACTTTGAAAAGCTTGTG
* * * * *
1105935 TTTTCAAACCTTATTTTAACATTTATTTGTTTATCTCAATCCCCACCGTAGGGGCACGACGATTG
650 TTTTCAAACCTTGTTTTCACATTTATTTGTTTATCCCAATCCCCACTGCAGGGGCACGACGATTG
*
1106000 ACTATTGACGATTGACTATCCCAATCCCCAAACCTTGTTTTTACATTTATTTTAAATAATATAAA
715 ACTA-T--C---T--CAAT--C---CCCCAAACCTTGTTTTTACATTTATTTTAAATAATATAAA
1106065 AATT
767 AATT
1106069 AAAGAATAAAATATACATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
1 AAAGAATAAAATATACATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
*
1106134 AAAATTAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAACCTTTATATTTTGTTT-AG
66 AAAA-TAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTT-TTTCAG
** * * * * * *
1106198 TAACTTTGGTAAGCTTGTGTTTTCAAACTTTGTTTTCACATTTATATGTTTATCCCAATCCCCAC
129 TAACTTTGAAAAGCTTGTGTTTTCAAACCTTATTTT-ACACTTATTTATTTATCCCAATCCTCAC
* * *
1106263 TGCAAGGGCACGACGATTGACTATTGACGCATTAAATTTTAGACCGTTAAGCTTTTGAGAAAAGA
193 TGCAAGGGCACGACGATTGACTATTAACGCATTAAATTTTAGACCATTAAGCTTTTAAGAAAAGA
* * * * *** * *
1106328 TTTGTTAAGTAGATTTGTGTATCAAACTTTTTTCCCTTTTCCCCCAACTATATGTTAGCTCTTAT
258 CTTGTTGAGTAGATTTGTATACCAAACTTTTTTCCCTTTTCCCCTTGCGATATGTTAGCTCTTAC
* * * *
1106393 AAGGTAACTTCAAAATATATATTACAAAACTATGGTGACGTATGTTTTAAAAATATAACAAAATT
323 AAGGTAACTTCAAAATATATATTATAAAAATATGGTGACGTATGTTTAAAAAATATATCAAAATT
* * *
1106458 CAATTTAAAAAAGAATAACAAGTTACGACAAAAAAGTATAATTTTTTTATTAAAAATAAATAATA
388 CAATTTAAAAAAGAATAACAAGTTACGACAAAAAAGTACAATTTTTTTATTAAAAATAGATAATG
* *
1106523 TTGTTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATATGCTTTTAATTTAACATTTA
453 TTGTTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATGTACTTTTAATTTAACATTTA
1106586 TTATTATTAC
Statistics
Matches: 1913, Mismatches: 117, Indels: 57
0.92 0.06 0.03
Matches are distributed among these distances:
764 101 0.05
765 2 0.00
766 296 0.15
767 323 0.17
768 239 0.12
769 254 0.13
770 25 0.01
772 65 0.03
773 90 0.05
775 3 0.00
777 1 0.00
779 49 0.03
780 18 0.01
781 6 0.00
782 35 0.02
783 85 0.04
784 28 0.01
785 291 0.15
786 2 0.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (770 bp):
AAAGAATAAAATATACATTTAATTAATTTTTTTAAAATTTAATAAAAATAATATATTAAATATAA
AAAATAAATAATTTTAAATAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTA
ACTTTGAAAAGCTTGTGTTTTCAAACCTTATTTTACACTTATTTATTTATCCCAATCCTCACTGC
AAGGGCACGACGATTGACTATTAACGCATTAAATTTTAGACCATTAAGCTTTTAAGAAAAGACTT
GTTGAGTAGATTTGTATACCAAACTTTTTTCCCTTTTCCCCTTGCGATATGTTAGCTCTTACAAG
GTAACTTCAAAATATATATTATAAAAATATGGTGACGTATGTTTAAAAAATATATCAAAATTCAA
TTTAAAAAAGAATAACAAGTTACGACAAAAAAGTACAATTTTTTTATTAAAAATAGATAATGTTG
TTTTTCAAATGTGTTTTATATAAAAATTAAATATGATATGTACTTTTAATTTAACATTTAATTAA
TTTAATTAATTTTTTAAAATTTAATAAAAATAATATATTAAATATAAAAATTAAATAATTTTAAA
TAGTATCCATATTCGGTGTTAAACAAGCCTTTATATTTTTTTCAGTAACTTTGAAAAGCTTGTGT
TTTCAAACCTTGTTTTCACATTTATTTGTTTATCCCAATCCCCACTGCAGGGGCACGACGATTGA
CTATCTCAATCCCCCAAACCTTGTTTTTACATTTATTTTAAATAATATAAAAATT
Found at i:1106011 original size:14 final size:14
Alignment explanation
Indices: 1105992--1106018 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1105982 GTAGGGGCAC
1105992 GACGATTGACTATT
1 GACGATTGACTATT
1106006 GACGATTGACTAT
1 GACGATTGACTAT
1106019 CCCAATCCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
GACGATTGACTATT
Found at i:1116690 original size:16 final size:15
Alignment explanation
Indices: 1116650--1116678 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1116640 ATAAAATGTT
1116650 ATTAA-AATTTTTAA
1 ATTAATAATTTTTAA
1116664 ATTAATAATTTTTAA
1 ATTAATAATTTTTAA
1116679 GATTCAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTTTAA
Found at i:1116798 original size:14 final size:14
Alignment explanation
Indices: 1116779--1116805 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1116769 ATGTTTAGAA
1116779 ATTTAGTATTTAAC
1 ATTTAGTATTTAAC
1116793 ATTTAGTATTTAA
1 ATTTAGTATTTAA
1116806 TTTTTTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (14 bp):
ATTTAGTATTTAAC
Found at i:1117424 original size:13 final size:13
Alignment explanation
Indices: 1117406--1117456 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
1117396 ATACATACAA
1117406 ATTGTATCGATAC
1 ATTGTATCGATAC
1117419 ATTGTATCGATAC
1 ATTGTATCGATAC
*
1117432 A-TG-A-CCA-A-
1 ATTGTATCGATAC
1117440 ATTGTATCGATAC
1 ATTGTATCGATAC
1117453 ATTG
1 ATTG
1117457 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
8 1 0.03
9 3 0.10
10 3 0.10
11 3 0.10
12 3 0.10
13 18 0.58
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:1117446 original size:34 final size:32
Alignment explanation
Indices: 1117388--1117456 Score: 120
Period size: 34 Copynumber: 2.1 Consensus size: 32
1117378 CCTTAACTGT
1117388 TTGTATCGATACATACAAATTGTATCGATACA
1 TTGTATCGATACATACAAATTGTATCGATACA
1117420 TTGTATCGATACATGACCAAATTGTATCGATACA
1 TTGTATCGATACAT-A-CAAATTGTATCGATACA
1117454 TTG
1 TTG
1117457 GCTTGTAACG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
32 14 0.40
33 1 0.03
34 20 0.57
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACATACAAATTGTATCGATACA
Found at i:1126123 original size:13 final size:13
Alignment explanation
Indices: 1126105--1126130 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1126095 ACATACAAAC
1126105 TGTATCGATACAT
1 TGTATCGATACAT
1126118 TGTATCGATACAT
1 TGTATCGATACAT
1126131 GACCAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1126149 original size:34 final size:32
Alignment explanation
Indices: 1126085--1126153 Score: 102
Period size: 34 Copynumber: 2.1 Consensus size: 32
1126075 CCTTAACTGT
*
1126085 TTGTATCGATACATACAAACTGTATCGATACA
1 TTGTATCGATACATACAAACTGTATAGATACA
*
1126117 TTGTATCGATACATGACCAAATTGTATAGATACA
1 TTGTATCGATACAT-A-CAAACTGTATAGATACA
1126151 TTG
1 TTG
1126154 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 14 0.42
33 1 0.03
34 18 0.55
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATACAAACTGTATAGATACA
Found at i:1128638 original size:20 final size:20
Alignment explanation
Indices: 1128613--1128670 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 20
1128603 CTGCTAGTTT
*
1128613 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGTA
*
1128633 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
1128652 CATGTATCGATAC-ATTGTA
1 CATGTATCGATACAATTGTA
1128671 TCGATGCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.03
19 18 0.53
20 15 0.44
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:1131029 original size:20 final size:21
Alignment explanation
Indices: 1131004--1131043 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1130994 TTTGTTGGTG
*
1131004 ATTTTGATG-AAAAATGAAGT
1 ATTTTGAAGTAAAAATGAAGT
1131024 ATTTTGAAGTAAAAATGAAG
1 ATTTTGAAGTAAAAATGAAG
1131044 AAATTTGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (21 bp):
ATTTTGAAGTAAAAATGAAGT
Found at i:1137401 original size:33 final size:33
Alignment explanation
Indices: 1137359--1137423 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1137349 TTAGAAGTAA
*
1137359 TGTATCAATACAAT-TCATCATGTATCGATACAT
1 TGTATCAATACAATGT-ACCATGTATCGATACAT
*
1137392 TGTATCAATATAATGTACCATGTATCGATACA
1 TGTATCAATACAATGTACCATGTATCGATACA
1137424 AACAGTGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (33 bp):
TGTATCAATACAATGTACCATGTATCGATACAT
Done.