Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold33
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2032796
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 48244 characters in sequence are not A, C, G, or T
File 5 of 13
Found at i:677937 original size:13 final size:13
Alignment explanation
Indices: 677919--677970 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
677909 AGCTTCGTAG
677919 CGATACATTGTAT
1 CGATACATTGTAT
677932 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
677951 CGATACATTGTAT
1 CGATACATTGTAT
677964 CGATACA
1 CGATACA
677971 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:677951 original size:19 final size:19
Alignment explanation
Indices: 677927--678046 Score: 93
Period size: 19 Copynumber: 6.7 Consensus size: 19
677917 AGCGATACAT
*
677927 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
677946 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
677959 TGTATCGATACAACACTTATGTAA
1 TGTATCGATACAACAC---T-T-A
677983 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
678002 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
678015 TGTATCGATACAACATTTA
1 TGTATCGATACAACACTTA
678034 TGTATCGATACAA
1 TGTATCGATACAA
678047 ATCGTTGGAA
Statistics
Matches: 83, Mismatches: 1, Indels: 34
0.70 0.01 0.29
Matches are distributed among these distances:
13 18 0.22
14 2 0.02
16 11 0.13
18 1 0.01
19 32 0.39
20 1 0.01
21 1 0.01
22 1 0.01
24 16 0.19
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:677960 original size:32 final size:32
Alignment explanation
Indices: 677919--678045 Score: 180
Period size: 32 Copynumber: 4.2 Consensus size: 32
677909 AGCTTCGTAG
*
677919 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
677951 CGATACATTGTATCGATACAACAC---T-TAT
1 CGATACATTGTATCGATACAACACTTATGTAT
677979 -G-TA-A-TGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
678007 CGATACATTGTATCGATACAACATTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
678039 CGATACA
1 CGATACA
678046 AATCGTTGGA
Statistics
Matches: 85, Mismatches: 2, Indels: 16
0.83 0.02 0.16
Matches are distributed among these distances:
24 16 0.19
25 1 0.01
26 2 0.02
27 2 0.02
28 6 0.07
29 2 0.02
30 2 0.02
31 1 0.01
32 53 0.62
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:677991 original size:24 final size:24
Alignment explanation
Indices: 677959--678005 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
677949 ATCGATACAT
677959 TGTATCGATACAACACTTATGTAA
1 TGTATCGATACAACACTTATGTAA
677983 TGTATCGATACAACACTTATGTA
1 TGTATCGATACAACACTTATGTA
678006 TCGATACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (24 bp):
TGTATCGATACAACACTTATGTAA
Found at i:678013 original size:56 final size:56
Alignment explanation
Indices: 677927--678037 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
677917 AGCGATACAT
677927 TGTATCGATACAAAACTTATGTATCGATACATTGTATCGATACAACACTTATGTAA
1 TGTATCGATACAAAACTTATGTATCGATACATTGTATCGATACAACACTTATGTAA
* *
677983 TGTATCGATACAACACTTATGTATCGATACATTGTATCGATACAACATTTATGTA
1 TGTATCGATACAAAACTTATGTATCGATACATTGTATCGATACAACACTTATGTA
678038 TCGATACAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (56 bp):
TGTATCGATACAAAACTTATGTATCGATACATTGTATCGATACAACACTTATGTAA
Found at i:678020 original size:13 final size:13
Alignment explanation
Indices: 678002--678026 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
677992 ACAACACTTA
678002 TGTATCGATACAT
1 TGTATCGATACAT
678015 TGTATCGATACA
1 TGTATCGATACA
678027 ACATTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:690307 original size:122 final size:122
Alignment explanation
Indices: 690083--690316 Score: 315
Period size: 122 Copynumber: 1.9 Consensus size: 122
690073 GAAATAAAAA
* *
690083 TCGGGGTTGGAGTATCCCCTCAAAAATAACAGGATTGGAGTATCCCTGATTATAAAAAATCAATA
1 TCGGGGTTGGAGTATCCCCTCAAAAATAACAGGACTAGAGTATCCCTGATTATAAAAAATCAATA
* * *
690148 TTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTGTGGAAAATTAGTAATAAAG
66 TTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGAAAATTAGTAATAAAG
* * * * * * *** *
690205 TCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGCTAGAGTATCCCTGATTGTGAGAAATTGGTG
1 TCGGGGTTGGAGTATCCCCTCAAAAATAACAGGACTAGAGTATCCCTGATTATAAAAAATCAATA
* *
690270 TTTTGAAAATAAAACCGGAGTTAGAATATCTCTGATTGTGGAAAATT
66 TTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGAAAATT
690317 GGTATTTTAG
Statistics
Matches: 95, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
122 95 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (122 bp):
TCGGGGTTGGAGTATCCCCTCAAAAATAACAGGACTAGAGTATCCCTGATTATAAAAAATCAATA
TTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGAAAATTAGTAATAAAG
Found at i:690372 original size:28 final size:29
Alignment explanation
Indices: 690336--690407 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
690326 GAAATAAAAT
690336 CGGGGTTGGAGTATCCTCTCGA-AAATAA
1 CGGGGTTGGAGTATCCTCTCGAGAAATAA
* *
690364 CGGGATTGGAGTAT--TCTCGATGACATAA
1 CGGGGTTGGAGTATCCTCTCGA-GAAATAA
*
690392 CGGGGTTAGAGTATCC
1 CGGGGTTGGAGTATCC
690408 CCGATTATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
26 6 0.17
28 30 0.83
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCTCTCGAGAAATAA
Found at i:690518 original size:29 final size:28
Alignment explanation
Indices: 690445--690518 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
690435 GATATAAAGC
* *
690445 CGGGGTTAGAGTATCCCCTTGAAAATAA
1 CGGGGTTGGAGTATCCCCATGAAAATAA
*
690473 CGGGGTTGGAGTATCCCCGATG-AAATGA
1 CGGGGTTGGAGTATCCCC-ATGAAAATAA
690501 CGGGGTTGGAGTAGTCCC
1 CGGGGTTGGAGTA-TCCC
690519 AATTGTGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
28 35 0.85
29 6 0.15
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCATGAAAATAA
Found at i:690611 original size:51 final size:51
Alignment explanation
Indices: 690525--690721 Score: 202
Period size: 51 Copynumber: 3.8 Consensus size: 51
690515 TCCCAATTGT
690525 GAAAAATTGGTAT-TTTTGGAAATAAAATC-AGAATTGGAGTATCCCCGATTAA
1 GAAAAATT-G-ATGTTTTGGAAATAAAATCGA-AATTGGAGTATCCCCGATTAA
* * *
690577 GAAAAATTGATGTTTTGGAGATGAAATCGAAATTGGAGTATCCCC-AGTTAC
1 GAAAAATTGATGTTTTGGAAATAAAATCGAAATTGGAGTATCCCCGA-TTAA
** * * * * * *
690628 GGTAAATCGATGCTTTAGAAATAAAATTGGAGTTGGAGTATCCCCGATTAA
1 GAAAAATTGATGTTTTGGAAATAAAATCGAAATTGGAGTATCCCCGATTAA
* * **
690679 GAAAAATTGATGTTTTGGAAATGAAACCGGGATTGGAGTATCC
1 GAAAAATTGATGTTTTGGAAATAAAATCGAAATTGGAGTATCC
690722 TCGAGATGAA
Statistics
Matches: 117, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
50 3 0.03
51 104 0.89
52 10 0.09
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (51 bp):
GAAAAATTGATGTTTTGGAAATAAAATCGAAATTGGAGTATCCCCGATTAA
Found at i:693405 original size:2 final size:2
Alignment explanation
Indices: 693398--693430 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
693388 AGATGTCTAC
693398 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
693431 AATTGGCTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:694620 original size:2 final size:2
Alignment explanation
Indices: 694613--694642 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
694603 CAAAAATGTT
694613 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
694643 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:695488 original size:35 final size:35
Alignment explanation
Indices: 695442--695509 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
695432 TGTTGGGATG
* *
695442 ATTGACTCATCTTTCTCTTTCTATGAGAATCGATT
1 ATTGACTCATCTTTCTCTCTCTATAAGAATCGATT
695477 ATTGACTCATCTTTCTCTCTCTATAAGAATCGA
1 ATTGACTCATCTTTCTCTCTCTATAAGAATCGA
695510 CGGCCATTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (35 bp):
ATTGACTCATCTTTCTCTCTCTATAAGAATCGATT
Found at i:698008 original size:55 final size:55
Alignment explanation
Indices: 697929--698038 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
697919 GCGACTATAC
*
697929 TATCAAGATCCTTTTGAGTCGAAACACTTATTTACAACCAATAATACTTTTATCA
1 TATCAAGATCCTTTTGAGTCGAAACACTTATTTACAACCAATAATACTTCTATCA
697984 TATCAAGATCCTTTTGAGTCGAAACACTTATTTACAACCAATAATACTTCTATCA
1 TATCAAGATCCTTTTGAGTCGAAACACTTATTTACAACCAATAATACTTCTATCA
698039 GATGGAGGTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.35
Consensus pattern (55 bp):
TATCAAGATCCTTTTGAGTCGAAACACTTATTTACAACCAATAATACTTCTATCA
Found at i:703574 original size:13 final size:13
Alignment explanation
Indices: 703556--703583 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
703546 ATACAAAGAT
703556 CAATGTATCGATA
1 CAATGTATCGATA
703569 CAATGTATCGATA
1 CAATGTATCGATA
703582 CA
1 CA
703584 TTATTCAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:703580 original size:33 final size:33
Alignment explanation
Indices: 703538--703603 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
703528 AAATTCCCAG
703538 ATGTATCGATACA-AAGATCAATGTATCGATACA
1 ATGTATCGATACATAA-ATCAATGTATCGATACA
* *
703571 ATGTATCGATACATTATTCAATGTATCGATACA
1 ATGTATCGATACATAAATCAATGTATCGATACA
703604 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACATAAATCAATGTATCGATACA
Found at i:704268 original size:12 final size:12
Alignment explanation
Indices: 704251--704285 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
704241 TGGGTGTAGT
704251 AGATGGAAAGTC
1 AGATGGAAAGTC
704263 AGATGGAAAGTC
1 AGATGGAAAGTC
704275 AGATGGAAAGT
1 AGATGGAAAGT
704286 AAGAAGTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.43, C:0.06, G:0.34, T:0.17
Consensus pattern (12 bp):
AGATGGAAAGTC
Found at i:711872 original size:166 final size:166
Alignment explanation
Indices: 711691--712052 Score: 405
Period size: 166 Copynumber: 2.2 Consensus size: 166
711681 GAGTTGAATG
* * * *
711691 ATAATATTATATGAATTTTAAAAATTTTAAATCAAGAAACATCCTCCC-GAAAATATTTATAGAG
1 ATAATATTTTATGAATTTTAAAAATTTTAAATCAAGAAAAATCCGCCCAGAAAATATTTACAGAG
* *
711755 TAGAAAACT--CTATTTTTCAGAA-ATA-GAAAATTTTCAAGGAAAAAATAAAAAACTGATGAAA
66 TAGAAAACTAAGTA-TTTT--GAATATAGGAAAA-TTTCAAGG-AAAAATAAAAAACTCATGAAA
* * * * *
711816 ATGAATAAATTTTTGAAAACTTATTTAATA-TGAAATATATA
126 ATAAATAAATTTTTGAAAAATGAATTAATAGTG-AATAAATA
** * *
711857 A-ATATATTTTATGAATTTTAAAAATTCAAAATGAAGAAAAATCCGCCCAGAAAATATTTACGGA
1 ATA-ATATTTTATGAATTTTAAAAATTTTAAATCAAGAAAAATCCGCCCAGAAAATATTTACAGA
* ** *
711921 GTAGAAAACTAAGTATTTTGAATATAGGAGAATTTCAAGGAAAAATTCAAAACTCATGCAAATAA
65 GTAGAAAACTAAGTATTTTGAATATAGGAAAATTTCAAGGAAAAATAAAAAACTCATGAAAATAA
* *
711986 ATGAATTTTTGAAAAATGAATTAATAGTGACTAAATA
130 ATAAATTTTTGAAAAATGAATTAATAGTGAATAAATA
* *
712023 ATAATATTTGATGAATTTTCAAAATTTTAA
1 ATAATATTTTATGAATTTTAAAAATTTTAA
712053 CCCATGAAAA
Statistics
Matches: 163, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
165 1 0.01
166 115 0.71
167 37 0.23
168 8 0.05
169 2 0.01
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.33
Consensus pattern (166 bp):
ATAATATTTTATGAATTTTAAAAATTTTAAATCAAGAAAAATCCGCCCAGAAAATATTTACAGAG
TAGAAAACTAAGTATTTTGAATATAGGAAAATTTCAAGGAAAAATAAAAAACTCATGAAAATAAA
TAAATTTTTGAAAAATGAATTAATAGTGAATAAATA
Found at i:713841 original size:23 final size:24
Alignment explanation
Indices: 713801--713846 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
713791 GTAACATCCA
713801 CTTTTTTTTATTGAAGAA-TTAGGG
1 CTTTTTTTTATT-AAGAACTTAGGG
713825 CTTTTTTTTATCT-AGAACTTAG
1 CTTTTTTTTAT-TAAGAACTTAG
713847 CCAAATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.20
24 15 0.75
25 1 0.05
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (24 bp):
CTTTTTTTTATTAAGAACTTAGGG
Found at i:714619 original size:48 final size:48
Alignment explanation
Indices: 714548--714691 Score: 198
Period size: 48 Copynumber: 3.0 Consensus size: 48
714538 AAGAGCGACC
* * *
714548 TAGGATTTCACTCTCAAAGCTAAAGGTAAAACACAGAATCAGTCAAAA
1 TAGGATTTCATTCTTAAAGCTAAAGGTACAACACAGAATCAGTCAAAA
* * *
714596 TAGGATTTAATTCTTAAAGCTAAAGGTACAACACAAAATCAGTCAATA
1 TAGGATTTCATTCTTAAAGCTAAAGGTACAACACAGAATCAGTCAAAA
* * * *
714644 TAGGGTTTCATTCTTAAAGCAAAATGTACAACACAGAATCAATCAAAA
1 TAGGATTTCATTCTTAAAGCTAAAGGTACAACACAGAATCAGTCAAAA
714692 AAATTTGTTA
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (48 bp):
TAGGATTTCATTCTTAAAGCTAAAGGTACAACACAGAATCAGTCAAAA
Found at i:715505 original size:7 final size:7
Alignment explanation
Indices: 715493--715523 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
715483 TAAAAACTAT
715493 AAATTTA
1 AAATTTA
715500 AAATTTA
1 AAATTTA
715507 AAATTTTA
1 AAA-TTTA
715515 AAATTTA
1 AAATTTA
715522 AA
1 AA
715524 TCTAAATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTTA
Found at i:715544 original size:6 final size:6
Alignment explanation
Indices: 715492--715544 Score: 52
Period size: 6 Copynumber: 8.2 Consensus size: 6
715482 TTAAAAACTA
* *
715492 TAAATT TAAAATT TAAAATTT TAAAATT TAAATC TAAATT CAAATT TAAATT
1 TAAATT T-AAATT T-AAA-TT T-AAATT TAAATT TAAATT TAAATT TAAATT
715544 T
1 T
715545 TTAAATGCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 21 0.51
7 13 0.32
8 7 0.17
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (6 bp):
TAAATT
Found at i:721767 original size:43 final size:43
Alignment explanation
Indices: 721706--721791 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
721696 TTGAGCTTGG
721706 GTTAAAGATTGAGTATATCTTATCTTTTTGGAGCCCAGTCTGT
1 GTTAAAGATTGAGTATATCTTATCTTTTTGGAGCCCAGTCTGT
721749 GTTAAAGATTGAGTATATCTTATCTTTTTGGAGCCCAGTCTGT
1 GTTAAAGATTGAGTATATCTTATCTTTTTGGAGCCCAGTCTGT
721792 TAGTTAACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (43 bp):
GTTAAAGATTGAGTATATCTTATCTTTTTGGAGCCCAGTCTGT
Found at i:722830 original size:67 final size:70
Alignment explanation
Indices: 722756--722888 Score: 175
Period size: 71 Copynumber: 1.9 Consensus size: 70
722746 TTTTAATAAA
* *
722756 TTAATTAAATTT-AAAAAATTT-AGTAA-A-AATAATATATTAATTATTATTTTATAATAAAAAA
1 TTAATT-AATTTAAAAAAATTTAAGTAATATAATAAAATATTAATTATTATTTTAAAATAAAAAA
722817 TAATAT
65 TAATAT
* * *
722823 TTAATTAATTTAAAAAAATTTACATTAATATATTAAAATATTAATTATTTTTTTAAAATAAAAAA
1 TTAATTAATTTAAAAAAATTTA-AGTAATATAATAAAATATTAATTATTATTTTAAAATAAAAAA
722888 T
65 T
722889 TAAATTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
66 5 0.09
67 15 0.27
69 4 0.07
70 1 0.02
71 31 0.55
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (70 bp):
TTAATTAATTTAAAAAAATTTAAGTAATATAATAAAATATTAATTATTATTTTAAAATAAAAAAT
AATAT
Found at i:722869 original size:20 final size:20
Alignment explanation
Indices: 722807--722869 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
722797 TATTATTTTA
722807 TAATA-AAAAATAATATTTAAT
1 TAATATAAAAA-AATA-TTAAT
*
722828 TAATTTAAAAAAAT-TTACAT
1 TAATATAAAAAAATATTA-AT
**
722848 TAATATATTAAAATATTAAT
1 TAATATAAAAAAATATTAAT
722868 TA
1 TA
722870 TTTTTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
19 3 0.09
20 17 0.49
21 10 0.29
22 5 0.14
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TAATATAAAAAAATATTAAT
Found at i:722942 original size:18 final size:17
Alignment explanation
Indices: 722915--722950 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
722905 TTATTATTAT
*
722915 TTTAATAAATTAATTAAA
1 TTTAAAAAATTAA-TAAA
722933 TTTAAAAAATTAATAAA
1 TTTAAAAAATTAATAAA
722950 T
1 T
722951 AATATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAAAAATTAATAAA
Found at i:723579 original size:19 final size:21
Alignment explanation
Indices: 723555--723616 Score: 83
Period size: 19 Copynumber: 3.0 Consensus size: 21
723545 CTTATTACTT
723555 TTTATTTATAAATT-ATT-AA
1 TTTATTTATAAATTAATTAAA
723574 TTTATTTATAAATTAATTAAA
1 TTTATTTATAAATTAATTAAA
*
723595 TTTATTTTTTAAAATTAATTAA
1 TTTA-TTTAT-AAATTAATTAA
723617 TATTGTACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
19 14 0.37
20 3 0.08
21 6 0.16
22 4 0.11
23 11 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATTTATAAATTAATTAAA
Found at i:723890 original size:122 final size:125
Alignment explanation
Indices: 723713--724061 Score: 448
Period size: 122 Copynumber: 2.8 Consensus size: 125
723703 TTATAATAAT
*
723713 TTTTTTAATTTAAAATTTTTTATTTT-TAAAAATATAATAATTAATATTTTAATTTGTTAATGTA
1 TTTTTTATTTTAAAATTTTTTATTTTATAAAAA-ATAATAATTAATATTTTAATTTGTTAATGTA
*
723777 AATTTTTAAACTTAATTAAATATAATTTTTTATTTTATT-AAAAT-T-ATAATAAAAAACC
65 AATTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAATATAATAATAAAAAACC
723835 -TTTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAA-ATTTTAATTTGTTAATGT
1 TTTTTTATTTTAAAATTTTTTA-TTTTATAAAAA-ATAATAATTAATATTTTAATTTGTTAATGT
* * *
723898 AATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAATAATAATAATAATAAACC
64 AAATTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAAT-ATAATAATAAAAAACC
* *
723961 TTTTTTATTTTTATTTAAAATTTTTTA--TTAT-TAAAA-AATAATTAATATTTTAATTTATTAA
1 TTTTTTA----T-TTTAAAATTTTTTATTTTATAAAAAATAATAATTAATATTTTAATTTGTTAA
* *
724022 TATAAATTTCTTTAAAGTTAATTAAATATTATTTTTTATT
61 TGTAAA-TT-TTTAAACTTAATTAAATATTATTTTTTATT
724062 AAAAATAATA
Statistics
Matches: 200, Mismatches: 12, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
121 20 0.10
122 59 0.29
123 22 0.11
125 1 0.00
126 21 0.10
127 25 0.12
128 5 0.03
129 32 0.16
131 1 0.00
132 14 0.07
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (125 bp):
TTTTTTATTTTAAAATTTTTTATTTTATAAAAAATAATAATTAATATTTTAATTTGTTAATGTAA
ATTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAATATAATAATAAAAAACC
Found at i:724870 original size:57 final size:57
Alignment explanation
Indices: 724782--724894 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
724772 AAAGTTGATT
* * *
724782 GATTGTAAATTTTAGACTGTAAGGATTAGACTAATGCATAAATTATATCTGAGAATC
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATAAATTATATCTGAGAATC
* *
724839 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCGTGAATTATATCTGAGAAT
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATAAATTATATCTGAGAAT
724895 TAGATTTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (57 bp):
GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATAAATTATATCTGAGAATC
Found at i:724967 original size:76 final size:72
Alignment explanation
Indices: 724877--725022 Score: 220
Period size: 76 Copynumber: 2.0 Consensus size: 72
724867 GACTAATGCG
*
724877 TGAATTATATCTGAGAATTAGATTTTTTTTTATAGAAAAAAAAGAAAAGTTGACTAATTGTAAAT
1 TGAATTATATCTGAGAATTAGATTCTTTTTTATAGAAAAAAAAG-AAAG-T--CTAATTGTAAAT
*
724942 GTTAGACTGCA
62 GTCAGACTGCA
* *
724953 TGAATTATATCTGAGAATTGGATTCTTTTTTATAGAAAAAAAAGAAAGTCTGATTGTAAATGTCA
1 TGAATTATATCTGAGAATTAGATTCTTTTTTATAGAAAAAAAAGAAAGTCTAATTGTAAATGTCA
725018 GACTG
66 GACTG
725023 TAAGGATTAG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
72 19 0.29
74 1 0.02
75 4 0.06
76 42 0.64
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.36
Consensus pattern (72 bp):
TGAATTATATCTGAGAATTAGATTCTTTTTTATAGAAAAAAAAGAAAGTCTAATTGTAAATGTCA
GACTGCA
Found at i:725048 original size:89 final size:89
Alignment explanation
Indices: 724949--725172 Score: 317
Period size: 91 Copynumber: 2.5 Consensus size: 89
724939 AATGTTAGAC
**
724949 TGCATGAATTATATCTGAGAATTGGATTCTTTTTTATAGAAAAAAAAGAAAGTCTGATTG-TAAA
1 TGCATGAATTATATCTGAGAATCAGATT-TTTTTTATAGAAAAAAAAGAAAGTCTGATTGATAAA
* *
725013 TGTCAGACTGTAAGGATTAGACTAA
65 TATCAGACTGCAAGGATTAGACTAA
* *
725038 TGCATGAATTATATTTGAGAATCAGATTTTTTTTATAG-AAAAAATGAAAGTCTGATTGATTATA
1 TGCATGAATTATATCTGAGAATCAGATTTTTTTTATAGAAAAAAAAGAAAGTCTGATTG---ATA
725102 AATATCAGACTGCAAGGATTAGACTAA
63 AATATCAGACTGCAAGGATTAGACTAA
* * *
725129 TGTATGAATTATATCAGAGAATCAGATTTTTTTTACAGAAAAAA
1 TGCATGAATTATATCTGAGAATCAGATTTTTTTTATAGAAAAAA
725173 GGAAAGACTG
Statistics
Matches: 120, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
87 19 0.16
88 10 0.08
89 25 0.21
91 61 0.51
92 5 0.04
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.35
Consensus pattern (89 bp):
TGCATGAATTATATCTGAGAATCAGATTTTTTTTATAGAAAAAAAAGAAAGTCTGATTGATAAAT
ATCAGACTGCAAGGATTAGACTAA
Found at i:725219 original size:69 final size:69
Alignment explanation
Indices: 725108--725387 Score: 420
Period size: 69 Copynumber: 4.0 Consensus size: 69
725098 TATAAATATC
* * *
725108 AGACTGCAAGGATTAGACTAATGTATGAATTATATCAGAGAATCAGATT-TTTTTTACAGAAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTAAAGAAAAA
725172 AGGAA
66 A-GAA
*
725177 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTAAAGAAAAA
725242 AGAA
66 AGAA
* *
725246 AGACTGCAAGGATTAGACTAATGCATGATTTATATCTGAGAATCAAATTCTTTTTTATAAGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTA-AAGAAAA
725311 AAGAA
65 AAGAA
* * *
725316 AGACTGCAAGGATTAGACTAATGCATGAATTGTA-CATGAGAATCAGATTTCTTTTGGTAAAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATC-TGAGAATCAGA-TTCTTTT-TTAAAGAA
725380 AAAAGAA
63 AAAAGAA
725387 A
1 A
725388 AGTTGGTTGA
Statistics
Matches: 195, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
69 106 0.54
70 68 0.35
71 19 0.10
72 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.29
Consensus pattern (69 bp):
AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTAAAGAAAAA
AGAA
Found at i:725357 original size:139 final size:139
Alignment explanation
Indices: 725108--725370 Score: 424
Period size: 139 Copynumber: 1.9 Consensus size: 139
725098 TATAAATATC
* * *
725108 AGACTGCAAGGATTAGACTAATGTATGAATTATATCAGAGAATCAGATTTTTTTTACAGAAAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAATCAAATTTTTTTTAAAGAAAAAA
725173 GGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGA-TTCTTTTTTATAG
66 GGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTTCTTTTTTATAG
725237 AAAAAAGAA
131 AAAAAAGAA
* *
725246 AGACTGCAAGGATTAGACTAATGCATGATTTATATCTGAGAATCAAATTCTTTTTTATAAGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAATCAAATT-TTTTTTA-AAGAAAA
*
725311 AA-GAAAGACTGCAAGGATTAGACTAATGCATGAATTGTA-CATGAGAATCAGATTTCTTTT
64 AAGGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATC-TGAGAATCAGATTTCTTTT
725371 GGTAAAAAAA
Statistics
Matches: 115, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
138 46 0.40
139 54 0.47
140 15 0.13
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (139 bp):
AGACTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAATCAAATTTTTTTTAAAGAAAAAA
GGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTTCTTTTTTATAG
AAAAAAGAA
Found at i:729527 original size:32 final size:32
Alignment explanation
Indices: 729486--729550 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
729476 TACATCAATG
*
729486 AATGTTTTAGAGTTATGAACAAATGTTTTTGA
1 AATGTTTTAGAGTTATGAACAAATATTTTTGA
729518 AATGTTTTAGAGTTATGAACAAATATTTTTGA
1 AATGTTTTAGAGTTATGAACAAATATTTTTGA
729550 A
1 A
729551 CCTTAAATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (32 bp):
AATGTTTTAGAGTTATGAACAAATATTTTTGA
Found at i:729720 original size:20 final size:20
Alignment explanation
Indices: 729697--729751 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
729687 ACATTATGCT
729697 TTGTATCGATACATGCACAA
1 TTGTATCGATACATGCACAA
*
729717 TTGTATCAATACATGCACAA
1 TTGTATCGATACATGCACAA
729737 TTGTATCGATACATG
1 TTGTATCGATACATG
729752 AATCTAGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (20 bp):
TTGTATCGATACATGCACAA
Found at i:729819 original size:13 final size:13
Alignment explanation
Indices: 729801--729825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
729791 CATGGCACAT
729801 TGTATCGATACAA
1 TGTATCGATACAA
729814 TGTATCGATACA
1 TGTATCGATACA
729826 TTGCTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:731431 original size:3 final size:3
Alignment explanation
Indices: 731416--731446 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
731406 AACCATCAAA
*
731416 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
731447 TTGACTCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:736611 original size:51 final size:51
Alignment explanation
Indices: 736484--736658 Score: 316
Period size: 51 Copynumber: 3.4 Consensus size: 51
736474 ATATGAAAAT
*
736484 TTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGCAAA
736535 TTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGCAAA
736587 TTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGCAAA
736638 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
736659 AAGATCAGTG
Statistics
Matches: 121, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
51 72 0.60
52 44 0.36
53 5 0.04
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGCAAA
Found at i:736685 original size:13 final size:13
Alignment explanation
Indices: 736667--736691 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
736657 CAAAGATCAG
736667 TGTATCGATACAA
1 TGTATCGATACAA
736680 TGTATCGATACA
1 TGTATCGATACA
736692 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:736769 original size:33 final size:33
Alignment explanation
Indices: 736732--736798 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
736722 AGTAGCTTAA
736732 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
736765 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
736798 A
1 A
736799 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:736772 original size:13 final size:13
Alignment explanation
Indices: 736754--736778 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
736744 CAAAAAAATA
736754 TGTATCGATACAT
1 TGTATCGATACAT
736767 TGTATCGATACA
1 TGTATCGATACA
736779 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:737868 original size:49 final size:49
Alignment explanation
Indices: 737659--738220 Score: 721
Period size: 49 Copynumber: 11.7 Consensus size: 49
737649 AAAAGGATGT
*
737659 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
737711 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
737754 CAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
737802 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
737851 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
737900 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
737949 CAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
737992 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
738041 CAATATGCTGATTCAAGGCCAGCGATATTGGTCTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
738084 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
738133 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
738185 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
738221 GAAGGGTTGC
Statistics
Matches: 447, Mismatches: 41, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
43 111 0.25
45 2 0.00
47 2 0.00
48 47 0.11
49 215 0.48
52 70 0.16
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:738029 original size:141 final size:139
Alignment explanation
Indices: 737703--738220 Score: 633
Period size: 141 Copynumber: 3.7 Consensus size: 139
737693 TAAAGATGGA
* * * * *
737703 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
737762 TGATTCAAGGCCAGCTACATTGGGCTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
66 TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGA-GTGCCAATGTGCTGATTCAAGGCCAGCTA
737827 CATTGGACTT
130 CATTGGACTT
737837 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
* * * *
737902 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAAGG
60 ATATGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGA-G-TGCCAATGTGCTGATTCAAGG
* * *
737967 CCAACGATATTGGACTT
123 CCAGCTACATTGGACTT
* *
737984 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
738049 TGATTCAAGGCCAGCGATATTGGTCTT-AA-A-G-GTGCCAATGTGCTGATTCAAGGCCAGCTAC
66 TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
738110 ATTGGACTTAAAGAT
131 ATTGGAC-T-----T
738125 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
*
738190 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
63 TGCTGATTCAAGGCCAGCTACATTGGGCTTA
738221 GAAGGGTTGC
Statistics
Matches: 334, Mismatches: 27, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
135 32 0.10
136 2 0.01
138 2 0.01
139 1 0.00
140 40 0.12
141 133 0.40
142 1 0.00
143 1 0.00
144 40 0.12
146 48 0.14
147 34 0.10
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (139 bp):
AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
ATTGGACTT
Found at i:738040 original size:92 final size:92
Alignment explanation
Indices: 737703--738171 Score: 626
Period size: 92 Copynumber: 5.0 Consensus size: 92
737693 TAAAGATGGA
* * *
737703 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
*
737762 TGATTCAAGGCCAGCTACATTGGGCTT
66 TGATTCAAGGCCAGCTACATTGGACTT
*
737789 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAA
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAA
*
737854 TGTGCTGAGTCAAGGCCAGCTACATTGGACTT
61 TGTGCTGATTCAAGGCCAGCTACATTGGACTT
* *
737886 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCA
* * * *
737951 ATATGCTGATTCAAGGCCAACGATATTGGACTT
60 ATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
737984 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
* * *
738049 TGATTCAAGGCCAGCGATATTGGTCTT
66 TGATTCAAGGCCAGCTACATTGGACTT
* *
738076 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
*
738141 TGAGTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTACATTGGACTT
738168 AAAG
1 AAAG
738172 ATGGAAAAGG
Statistics
Matches: 342, Mismatches: 25, Indels: 25
0.87 0.06 0.06
Matches are distributed among these distances:
87 2 0.01
91 38 0.11
92 178 0.52
93 1 0.00
94 2 0.01
96 1 0.00
97 36 0.11
98 82 0.24
100 1 0.00
102 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
TGATTCAAGGCCAGCTACATTGGACTT
Found at i:738264 original size:33 final size:35
Alignment explanation
Indices: 738220--738289 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
738210 TATTGGGCTT
738220 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
738254 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
738288 AG
1 AG
738290 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:738332 original size:34 final size:33
Alignment explanation
Indices: 738294--738925 Score: 325
Period size: 34 Copynumber: 18.6 Consensus size: 33
738284 AGGAAGGGAG
*
738294 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAA-GGAA
*
738328 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
738363 AAAG-TGCCACGGCGTTGTGGGCTTTGAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
738398 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAA-AGGAA
738433 AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
* ** * * *
738469 AGAGAGTGCCACAAAGTTGTAGGTGC-CACAGAGTTGTGGGCTTTA
1 AAAGA-TGCCACGGAGTTGT-GG-GCTTA-A-A-----AGG---AA
*
738514 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
1 AAAG----A--TGCCACGGAGTTGTGGGC-TT--AAAAGGAA
* **
738556 AAAGAGTACCACAAAGTTGTGGGCTTTAAAA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
738590 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* *
738624 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAAG-GAA
738660 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAA-AGGAA
* *
738695 AAAGGTGCCACGGAGTTGTGGGCTTAAACGG--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
738726 ---G-TGCCACGGAGTTGTGGACTTAAATATGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAA-AGGAA
* *
738756 AAA-AGTGCCACAGAATTGTGGGCTTTAAAAGG--
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
738788 ---G-TGCCACGGAGTTGTGGACTT-AAA-G-A
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
** * *
738814 TGAGGTGCCACGGAGTTGTGGGCTTTAAA-G--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
*
738844 --AG-TGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
738874 CAAGGTGCCACGGAGTTGTGGGCTTTAAA-GAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
738906 AAA-ATGCCACTGAGTCGTGG
1 AAAGATGCCACGGAGTTGTGG
738926 ACTTTGAGAC
Statistics
Matches: 488, Mismatches: 50, Indels: 123
0.74 0.08 0.19
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 46 0.09
28 20 0.04
29 1 0.00
30 19 0.04
31 18 0.04
32 7 0.01
33 66 0.14
34 109 0.22
35 58 0.12
36 26 0.05
37 75 0.15
38 4 0.01
39 2 0.00
42 7 0.01
45 5 0.01
48 2 0.00
49 3 0.01
50 14 0.03
51 1 0.00
52 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (33 bp):
AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:738349 original size:71 final size:71
Alignment explanation
Indices: 738274--738930 Score: 422
Period size: 71 Copynumber: 9.6 Consensus size: 71
738264 CACCGACTTG
* * *
738274 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTA--AAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGC
738337 CACGGAGT
64 CACGGAGT
* * *
738345 TGTGGGCTTTAAAAGAAAAAAG-TGCCACGGCGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
738409 CGGAGT
66 CGGAGT
*
738415 TGTGGGCTTTAAACA-GAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCC
1 TGTGGGCTTTAAA-AGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCC
**
738479 ACAAAGT
65 ACGGAGT
*** ** *
738486 TGTAGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 TGT-GG-GCTTTA-A----AAGG-----AAA----AAGATGCCACGGAGTTGTGGGCTTT-AAAA
* * **
738551 A-GAAAAAAGAGTACCACAAAGT
49 AGGGAAAAAGAGTGCCACGGAGT
* * * *
738573 TGTGGGCTTTAAAA-GAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
738634 CGGAGT
66 CGGAGT
*
738640 TGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA--GAAAAAG-GTG
1 TGTGGGCTTT-AAAAG-GAAAAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTG
738702 CCACGGAGT
63 CCACGGAGT
* * * *
738711 TGTGGGC-TTAAACGG-----G-TGCCACGGAGTTGTGGAC-TTAAATA-TGAAAAA-AGTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
* *
738766 CAGAAT
66 CGGAGT
* **
738772 TGTGGGCTTTAAAAGG-----G-TGCCACGGAGTTGTGGAC-TT--AAA--G-ATGAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
738824 CGGAGT
66 CGGAGT
* *
738830 TGTGGGCTTT-AAA-G----AG-TGCCACGGAGTTGTGGAC-TT-AAAA-GGAACAAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
738884 CGGAGT
66 CGGAGT
* * *
738890 TGTGGGCTTT-AAA-GAAAAA-ATGCCACTGAGTCGTGGACTTT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTT
738931 GAGACAAAAT
Statistics
Matches: 494, Mismatches: 52, Indels: 86
0.78 0.08 0.14
Matches are distributed among these distances:
56 1 0.00
57 24 0.05
58 25 0.05
59 2 0.00
60 37 0.07
61 40 0.08
62 28 0.06
63 1 0.00
64 17 0.03
65 2 0.00
67 19 0.04
68 26 0.05
69 18 0.04
70 78 0.16
71 107 0.22
72 2 0.00
73 3 0.01
74 3 0.01
78 1 0.00
79 1 0.00
83 3 0.01
84 1 0.00
85 3 0.01
86 2 0.00
87 45 0.09
88 5 0.01
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.21
Consensus pattern (71 bp):
TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
CGGAGT
Found at i:738526 original size:33 final size:33
Alignment explanation
Indices: 738489--738930 Score: 419
Period size: 34 Copynumber: 13.7 Consensus size: 33
738479 ACAAAGTTGT
*
738489 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
738522 AGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT--AAAAG-AAAA
* ** *
738558 AGAGTACCACAAAGTTGTGGGCTTTAAAAGAAGA
1 AG-GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
*
738592 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGA
1 AGGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAA
738626 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT--AAA-AGAAAA
738662 AGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAA
1 AG-GTGCCACGGAGTTGTGGGCTTTAAA-AGAAAA
*
738697 AGGTGCCACGGAGTTGTGGGC-TTAAACG----
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
*
738725 -GGTGCCACGGAGTTGTGGAC-TTAAATATGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAA-A-GAAAA
* * *
738758 AAGTGCCACAGAATTGTGGGCTTTAAAAG----
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* **
738787 -GGTGCCACGGAGTTGTGGAC-TT-AAAG-ATG
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
738816 AGGTGCCACGGAGTTGTGGGCTTT-AAAG----
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* *
738844 A-GTGCCACGGAGTTGTGGAC-TTAAAAGGAACA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAA
738876 AGGTGCCACGGAGTTGTGGGCTTT-AAAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* * * *
738908 A-ATGCCACTGAGTCGTGGACTTT
1 AGGTGCCACGGAGTTGTGGGCTTT
738931 GAGACAAAAT
Statistics
Matches: 350, Mismatches: 30, Indels: 60
0.80 0.07 0.14
Matches are distributed among these distances:
26 6 0.02
27 47 0.13
28 18 0.05
29 1 0.00
30 19 0.05
31 24 0.07
32 7 0.02
33 69 0.20
34 76 0.22
35 29 0.08
36 13 0.04
37 41 0.12
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (33 bp):
AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
Found at i:738562 original size:87 final size:88
Alignment explanation
Indices: 738403--738575 Score: 278
Period size: 87 Copynumber: 2.0 Consensus size: 88
738393 GGGAAAAAGA
* *
738403 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAA
* *
738468 AAGAGAGTGCCACAAAGTTGTAG
66 AAAAGAGTACCACAAAGTTGTAG
*
738491 GTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAA-GA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTT-AAAAAGGA
738554 AAAAAGAGTACCACAAAGTTGT
65 AAAAAGAGTACCACAAAGTTGT
738576 GGGCTTTAAA
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
87 50 0.63
88 29 0.37
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (88 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAA
AAAAGAGTACCACAAAGTTGTAG
Found at i:738607 original size:70 final size:67
Alignment explanation
Indices: 738489--738902 Score: 397
Period size: 70 Copynumber: 6.4 Consensus size: 67
738479 ACAAAGTTGT
*
738489 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGA
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAAAG-
738554 AAAA
64 AAAA
* * *
738558 AGAGTACCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGA
1 AG-GTGCCACAGAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGA
*
738623 AGA
65 AAA
* * *
738626 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAC
1 AGGTGCCACAGAGTTGTGGGCTTT--AAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAA
738691 AGAAAA
62 AGAAAA
* * * *
738697 AGGTGCCACGGAGTTGTGGGC-TT--AA-ACG--GGTGCCACGGAGTTGTGGAC-TTAAATATGA
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA-AAGA
738755 AAA
65 AAA
* * *
738758 AAGTGCCACAGAATTGTGGGCTTT--AA-AAG--GGTGCCACGGAGTTGTGGAC-TT--AAAG-A
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
**
738814 TG
66 AA
* * *
738816 AGGTGCCACGGAGTTGTGGGCTTT---A-AAG-A-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
738874 CA
66 AA
*
738876 AGGTGCCACGGAGTTGTGGGCTTTAAA
1 AGGTGCCACAGAGTTGTGGGCTTTAAA
738903 GAAAAAATGC
Statistics
Matches: 301, Mismatches: 30, Indels: 34
0.82 0.08 0.09
Matches are distributed among these distances:
57 25 0.08
58 22 0.07
59 5 0.02
60 31 0.10
61 41 0.14
62 29 0.10
64 1 0.00
65 1 0.00
66 1 0.00
67 19 0.06
68 5 0.02
69 10 0.03
70 61 0.20
71 50 0.17
ACGTcount: A:0.31, C:0.13, G:0.34, T:0.22
Consensus pattern (67 bp):
AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
AA
Found at i:738635 original size:191 final size:191
Alignment explanation
Indices: 738299--738671 Score: 524
Period size: 191 Copynumber: 1.9 Consensus size: 191
738289 GGGAGAAAGA
*
738299 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
1 TGCCACAGAGTTGTGGACTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* ***
738364 AAGTGCCACGGCGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAC
65 AAGTACCACAAAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAC
* *
738429 AGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTTGTAGG
129 AGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAGAAAAAGAGTGCCACAAAGTTGTAGG
*
738492 TGCCACAGAGTTGTGGGCTTTAAAA-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAAGAA
1 TGCCACAGAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT--AAAAG-A
*
738555 AAAAGAGTACCACAAAGTTGTGGGCTTT-AAAA-GAAGAAG-GTGCCACGGAGTTGTGGGCTTTG
62 AAAA-AGTACCACAAAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-
* * *
738617 AAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCAC
125 AAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAGAAAAAGAGTGCCAC
738672 GGAGTTGTGG
Statistics
Matches: 162, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
191 91 0.56
192 16 0.10
193 21 0.13
194 15 0.09
195 19 0.12
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.20
Consensus pattern (191 bp):
TGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
AGTACCACAAAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
AAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAGAAAAAGAGTGCCACAAAGTTGTAGG
Found at i:738736 original size:27 final size:28
Alignment explanation
Indices: 738665--738898 Score: 161
Period size: 27 Copynumber: 7.8 Consensus size: 28
738655 GAGAAAAAGA
738665 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG
1 GTGCCACGGAGTTGTGGGC-TTAAAC-G----AG
738699 GTGCCACGGAGTTGTGGGCTTAAACG-G
1 GTGCCACGGAGTTGTGGGCTTAAACGAG
* * *
738726 GTGCCACGGAGTTGTGGACTTAAATATGAAAAAA
1 GTGCCACGGAGTTGTGGGCTT-AA-ACG----AG
* * *
738760 GTGCCACAGAATTGTGGGCTTTAAAAG-G
1 GTGCCACGGAGTTGTGGGC-TTAAACGAG
* *
738788 GTGCCACGGAGTTGTGGACTTAAAGATGAG
1 GTGCCACGGAGTTGTGGGCTT-AA-ACGAG
738818 GTGCCACGGAGTTGTGGGCTTTAAA-GA-
1 GTGCCACGGAGTTGTGGGC-TTAAACGAG
* *
738845 GTGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTTGTGGGCTT---A--AACGAG
738878 GTGCCACGGAGTTGTGGGCTT
1 GTGCCACGGAGTTGTGGGCTT
738899 TAAAGAAAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 39
0.75 0.07 0.18
Matches are distributed among these distances:
26 2 0.01
27 41 0.25
28 22 0.13
29 6 0.04
30 21 0.13
31 4 0.02
32 2 0.01
33 28 0.17
34 37 0.22
35 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (28 bp):
GTGCCACGGAGTTGTGGGCTTAAACGAG
Found at i:738764 original size:61 final size:60
Alignment explanation
Indices: 738660--738903 Score: 320
Period size: 61 Copynumber: 4.1 Consensus size: 60
738650 GAAAAGAGAA
* *
738660 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGTTGTGGGC-TT
1 AAAGGGTGCCACGGAGTTGTGGAC-TTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * *
738720 AAACGGGTGCCACGGAGTTGTGGACTTAAATATGAAAAAAGTGCCACAGAATTGTGGGCTTT
1 AAA-GGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
738782 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATG----AGGTGCCACGGAGTTGTGGGCTTT
1 -AAAGGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * *
738840 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
738900 AAAG
1 AAAG
738904 AAAAAATGCC
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
56 2 0.01
57 28 0.17
58 21 0.13
60 37 0.23
61 42 0.26
62 31 0.19
63 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (60 bp):
AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
Found at i:738941 original size:30 final size:32
Alignment explanation
Indices: 738841--739028 Score: 163
Period size: 31 Copynumber: 6.0 Consensus size: 32
738831 GTGGGCTTTA
* * * *
738841 AAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAC
1 AAGAATGCCACTGAGTCGTGGACTTTAAA-G-AC
* * * *
738875 AAG-GTGCCACGGAGTTGTGGGCTTTAAAGA-
1 AAGAATGCCACTGAGTCGTGGACTTTAAAGAC
* *
738905 AAAAATGCCACTGAGTCGTGGACTTT-GAGAC
1 AAGAATGCCACTGAGTCGTGGACTTTAAAGAC
*
738936 AA-AATGCCACTGAGTCGTGGACTTTAAAGAG
1 AAGAATGCCACTGAGTCGTGGACTTTAAAGAC
* * *
738967 AAGGATGCCACTGCGTCGTGGACTTT-GAG-C
1 AAGAATGCCACTGAGTCGTGGACTTTAAAGAC
* *
738997 AGAGATTGCCACTGAGTTGTGGACTTTAAAGA
1 A-AGAATGCCACTGAGTCGTGGACTTTAAAGA
739029 GATTTGAAGA
Statistics
Matches: 128, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
30 29 0.23
31 49 0.38
32 24 0.19
33 23 0.18
34 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
AAGAATGCCACTGAGTCGTGGACTTTAAAGAC
Found at i:739027 original size:63 final size:62
Alignment explanation
Indices: 738879--739030 Score: 209
Period size: 63 Copynumber: 2.5 Consensus size: 62
738869 AGGAACAAGG
* *
738879 TGCCACGGAGTTGTGGGCTTTAAAGA-AAAAATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTTGTGGACTTTAAAGAGAAAAATGCCACTGAGTCGTGGACTTTGAGACAAAA
* ** * *
738940 TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGCGTCGTGGACTTTGAG-CAGAGAT
1 TGCCACTGAGTTGTGGACTTTAAAGAGAAAAATGCCACTGAGTCGTGGACTTTGAGACA-A-AA
739003 TGCCACTGAGTTGTGGACTTTAAAGAGA
1 TGCCACTGAGTTGTGGACTTTAAAGAGA
739031 TTTGAAGAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
61 25 0.31
62 27 0.34
63 28 0.35
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (62 bp):
TGCCACTGAGTTGTGGACTTTAAAGAGAAAAATGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:744023 original size:21 final size:21
Alignment explanation
Indices: 743999--744041 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
743989 ATCAAAATGA
743999 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
744020 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
744041 C
1 C
744042 TCCTGACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (21 bp):
CATTCATTGCATGACGAGATG
Found at i:747344 original size:52 final size:52
Alignment explanation
Indices: 747266--747393 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
747256 CGAAATATGA
*
747266 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
747318 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
747370 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
747394 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:747420 original size:13 final size:13
Alignment explanation
Indices: 747402--747426 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
747392 CAAAGATCAG
747402 TGTATCGATACAA
1 TGTATCGATACAA
747415 TGTATCGATACA
1 TGTATCGATACA
747427 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:747504 original size:33 final size:33
Alignment explanation
Indices: 747467--747533 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
747457 AGTAGCTTAA
747467 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
747500 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
747533 A
1 A
747534 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:747507 original size:13 final size:13
Alignment explanation
Indices: 747489--747513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
747479 CAAAAAAATA
747489 TGTATCGATACAT
1 TGTATCGATACAT
747502 TGTATCGATACA
1 TGTATCGATACA
747514 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:748414 original size:56 final size:52
Alignment explanation
Indices: 748330--748961 Score: 557
Period size: 49 Copynumber: 13.0 Consensus size: 52
748320 GAAAAGTGAT
* * * * * *
748330 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGATGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG--G-A
* * * *
748385 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
748438 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
748481 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGGT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
748531 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
748579 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
748628 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
748677 -ATGATGCCAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
748719 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
748769 -AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
748811 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
748860 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
748912 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA-ATGG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
748962 TTGCCACCGA
Statistics
Matches: 500, Mismatches: 50, Indels: 58
0.82 0.08 0.10
Matches are distributed among these distances:
43 108 0.22
44 3 0.01
46 1 0.00
48 48 0.10
49 215 0.43
51 5 0.01
52 73 0.15
53 6 0.01
54 1 0.00
55 4 0.01
56 36 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
Found at i:748603 original size:49 final size:49
Alignment explanation
Indices: 748394--748957 Score: 725
Period size: 49 Copynumber: 11.8 Consensus size: 49
748384 AAAAGGATGT
*
748394 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
748446 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
748489 CAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
748537 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
748586 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
748635 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
748684 CAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
748727 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
748776 CAATATGCTGATTCAAGGCCAGCGATATTGGTCTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
748819 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
748868 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
748920 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
748958 ATGGTTGCCA
Statistics
Matches: 449, Mismatches: 41, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
43 111 0.25
45 2 0.00
47 2 0.00
48 47 0.10
49 215 0.48
52 72 0.16
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:748764 original size:141 final size:139
Alignment explanation
Indices: 748438--748957 Score: 637
Period size: 141 Copynumber: 3.7 Consensus size: 139
748428 TAAAGATGGA
* * * * *
748438 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
748497 TGATTCAAGGCCAGCTACATTGGGCTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
66 TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGA-GTGCCAATGTGCTGATTCAAGGCCAGCTA
748562 CATTGGACTT
130 CATTGGACTT
748572 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
* * * *
748637 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAAGG
60 ATATGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGA-G-TGCCAATGTGCTGATTCAAGG
* * *
748702 CCAACGATATTGGACTT
123 CCAGCTACATTGGACTT
* *
748719 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
748784 TGATTCAAGGCCAGCGATATTGGTCTT-AA-A-G-GTGCCAATGTGCTGATTCAAGGCCAGCTAC
66 TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
748845 ATTGGACTTAAAGAT
131 ATTGGAC-T-----T
748860 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
*
748925 TGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
63 TGCTGATTCAAGGCCAGCTACATTGGGCTTAAA
748958 ATGGTTGCCA
Statistics
Matches: 336, Mismatches: 27, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
135 32 0.10
136 2 0.01
138 2 0.01
139 1 0.00
140 40 0.12
141 133 0.40
142 1 0.00
143 1 0.00
144 40 0.12
145 2 0.01
146 48 0.14
147 34 0.10
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (139 bp):
AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
ATTGGACTT
Found at i:748775 original size:92 final size:92
Alignment explanation
Indices: 748438--748906 Score: 626
Period size: 92 Copynumber: 5.0 Consensus size: 92
748428 TAAAGATGGA
* * *
748438 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
*
748497 TGATTCAAGGCCAGCTACATTGGGCTT
66 TGATTCAAGGCCAGCTACATTGGACTT
*
748524 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAA
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAA
*
748589 TGTGCTGAGTCAAGGCCAGCTACATTGGACTT
61 TGTGCTGATTCAAGGCCAGCTACATTGGACTT
* *
748621 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCA
* * * *
748686 ATATGCTGATTCAAGGCCAACGATATTGGACTT
60 ATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
748719 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
* * *
748784 TGATTCAAGGCCAGCGATATTGGTCTT
66 TGATTCAAGGCCAGCTACATTGGACTT
* *
748811 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
*
748876 TGAGTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTACATTGGACTT
748903 AAAG
1 AAAG
748907 ATGGAAAAGG
Statistics
Matches: 342, Mismatches: 25, Indels: 25
0.87 0.06 0.06
Matches are distributed among these distances:
87 2 0.01
91 38 0.11
92 178 0.52
93 1 0.00
94 2 0.01
96 1 0.00
97 36 0.11
98 82 0.24
100 1 0.00
102 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
TGATTCAAGGCCAGCTACATTGGACTT
Found at i:748999 original size:33 final size:34
Alignment explanation
Indices: 748960--749024 Score: 114
Period size: 33 Copynumber: 1.9 Consensus size: 34
748950 GGCTTAAAAT
748960 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAGAA
*
748993 GGTTGCCACTGACTTGTGTGGGCTTTAGGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG
749025 GGAGAAAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 25 0.83
34 5 0.17
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (34 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGGAAGAA
Found at i:749067 original size:34 final size:33
Alignment explanation
Indices: 749029--749661 Score: 327
Period size: 34 Copynumber: 18.6 Consensus size: 33
749019 AGGAAGGGAG
*
749029 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAA-GGAA
*
749063 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
749098 AAAG-TGCCACGGCGTTGTGGGCTTTGAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
749133 AAAGAATGCCACGGAGTTGTGGGCTTTAAACA-GAA
1 AAAG-ATGCCACGGAGTTGTGGGC-TTAAA-AGGAA
749168 AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
* ** * * *
749204 AGAGAGTGCCACAAAGTTGTAGGTGC-CACAGAGTTGTGGGCTTTA
1 AAAGA-TGCCACGGAGTTGT-GG-GCTTA-A-A-----AGG---AA
*
749249 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
1 AAAG----A--TGCCACGGAGTTGTGGGC-TT--AAAAGGAA
**
749291 AAAGAGTGCCACAAAGTTGTGGGCTTTAAAA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
749325 GAAGGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAA
1 -AAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* *
749360 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAAG-GAA
749396 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAA-AGGAA
* *
749431 AAAGGTGCCACGGAGTTGTGGGCTTAAACGG--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
749462 ---G-TGCCACGGAGTTGTGGACTTAAATATGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAA-AGGAA
* *
749492 AAA-AGTGCCACAGAATTGTGGGCTTTAAAAGG--
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
749524 ---G-TGCCACGGAGTTGTGGACTT-AAA-G-A
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
** * *
749550 TGAGGTGCCACGGAGTTGTGGGCTTTAAA-G--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
*
749580 --AG-TGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
749610 CAAGGTGCCACGGAGTTGTGGGCTTTAAA-GAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
749642 AAA-ATGCCACTGAGTCGTGG
1 AAAGATGCCACGGAGTTGTGG
749662 ACTTTGAGAC
Statistics
Matches: 488, Mismatches: 50, Indels: 125
0.74 0.08 0.19
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 46 0.09
28 20 0.04
29 1 0.00
30 19 0.04
31 18 0.04
32 7 0.01
33 48 0.10
34 117 0.24
35 67 0.14
36 26 0.05
37 76 0.16
38 4 0.01
39 2 0.00
42 7 0.01
45 5 0.01
48 2 0.00
49 3 0.01
50 14 0.03
51 1 0.00
52 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (33 bp):
AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:749084 original size:71 final size:71
Alignment explanation
Indices: 749009--749666 Score: 415
Period size: 71 Copynumber: 9.6 Consensus size: 71
748999 CACTGACTTG
* * *
749009 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTA--AAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGC
749072 CACGGAGT
64 CACGGAGT
* * * *
749080 TGTGGGCTTTAAAAGAAAAAAG-TGCCACGGCGTTGTGGGCTTTGAAAAGGGAAAAAGAATGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
749144 CGGAGT
66 CGGAGT
*
749150 TGTGGGCTTTAAACA-GAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCC
1 TGTGGGCTTTAAA-AGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCC
**
749214 ACAAAGT
65 ACGGAGT
*** ** *
749221 TGTAGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 TGT-GG-GCTTTA-A----AAGG-----AAA----AAGATGCCACGGAGTTGTGGGCTTT-AAAA
* **
749286 A-GAAAAAAGAGTGCCACAAAGT
49 AGGGAAAAAGAGTGCCACGGAGT
* * * *
749308 TGTGGGCTTTAAAA-GAAGAAGGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAG-GTGCC
1 TGTGGGCTTTAAAAGGAA-AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCC
749369 ACGGAGT
65 ACGGAGT
*
749376 TGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA--GAAAAAG-GTG
1 TGTGGGCTTT-AAAAG-GAAAAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTG
749438 CCACGGAGT
63 CCACGGAGT
* * * *
749447 TGTGGGC-TTAAACGG-----G-TGCCACGGAGTTGTGGAC-TTAAATA-TGAAAAA-AGTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
* *
749502 CAGAAT
66 CGGAGT
* **
749508 TGTGGGCTTTAAAAGG-----G-TGCCACGGAGTTGTGGAC-TT--AAA--G-ATGAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
749560 CGGAGT
66 CGGAGT
* *
749566 TGTGGGCTTT-AAA-G----AG-TGCCACGGAGTTGTGGAC-TT-AAAA-GGAACAAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
749620 CGGAGT
66 CGGAGT
* * *
749626 TGTGGGCTTT-AAA-GAAAAA-ATGCCACTGAGTCGTGGACTTT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTT
749667 GAGACAAAAT
Statistics
Matches: 494, Mismatches: 52, Indels: 88
0.78 0.08 0.14
Matches are distributed among these distances:
56 1 0.00
57 24 0.05
58 25 0.05
59 2 0.00
60 37 0.07
61 40 0.08
62 28 0.06
63 1 0.00
64 17 0.03
65 2 0.00
68 37 0.07
69 23 0.05
70 53 0.11
71 133 0.27
72 2 0.00
73 3 0.01
74 3 0.01
75 1 0.00
78 1 0.00
79 1 0.00
83 3 0.01
84 1 0.00
85 3 0.01
86 2 0.00
87 46 0.09
88 5 0.01
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (71 bp):
TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
CGGAGT
Found at i:749297 original size:87 final size:88
Alignment explanation
Indices: 749139--749310 Score: 285
Period size: 87 Copynumber: 2.0 Consensus size: 88
749129 GGAAAAAGAA
* *
749139 TGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 TGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAAA
*
749204 AGAGAGTGCCACAAAGTTGTAGG
66 AAAGAGTGCCACAAAGTTGTAGG
*
749227 TGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAA-GAA
1 TGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTT-AAAAAGGAA
749290 AAAAGAGTGCCACAAAGTTGT
65 AAAAGAGTGCCACAAAGTTGT
749311 GGGCTTTAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
87 51 0.65
88 28 0.35
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.21
Consensus pattern (88 bp):
TGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAAA
AAAGAGTGCCACAAAGTTGTAGG
Found at i:749357 original size:158 final size:158
Alignment explanation
Indices: 749068--749357 Score: 465
Period size: 158 Copynumber: 1.8 Consensus size: 158
749058 GGGAAAAAGA
* * * *
749068 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGCGTTGTGGGCTTTGAAAAGGGAA
1 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
**
749133 AAAGAATGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA
66 AAAGAATGCCACAAAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA
749198 AGGGAAAGAGAGTGCCACAAAGTTGTAG
131 AGGGAAAGAGAGTGCCACAAAGTTGTAG
*
749226 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
1 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
* * * *
749291 AAAGAGTGCCACAAAGTTGTGGGCTTTAAA-AGAAGAAGGGTGCCACGGAGTTGTGGGCTTTGAA
66 AAAGAATGCCACAAAGTTGTGGGCTTTAAACAGAA-AAAGATGCCACGGAGTTGTGGGCTTTAAA
749355 AAG
130 AAG
749358 AAGAAGGTGC
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
157 4 0.03
158 116 0.97
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (158 bp):
GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
AAAGAATGCCACAAAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA
AGGGAAAGAGAGTGCCACAAAGTTGTAG
Found at i:749406 original size:105 final size:99
Alignment explanation
Indices: 749225--749668 Score: 412
Period size: 105 Copynumber: 4.6 Consensus size: 99
749215 CAAAGTTGTA
* *
749225 GGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAA
1 GGTGCCACGGAGTTGTGGGC-TT-AAAG-AAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAAG-A
749290 AAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAG
62 AAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAA-AAG
749329 GGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAG
1 GGTGCCACGGAGTTGTGGGC-TT--AAAGAAG-AGGTGCCACGGAGTTGTGGGCTTTGAAAA-AG
** *
749394 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAA
61 AAAAAGAGTGCCACAAAGTTGTGGGCTTTAAA-AGAAAAG
* * *
749434 GGTGCCACGGAGTTGTGGGCTT-AA-ACG-GGTGCCACGGAGTTGTGGAC-TT-AAATATGAAAA
1 GGTGCCACGGAGTTGTGGGCTTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGAAA-AAGAAAA
749494 A-AGTGCCACAGAA-TTGTGGGCTTT-----AAAAG
65 AGAGTGCCACA-AAGTTGTGGGCTTTAAAAGAAAAG
* *
749523 GGTGCCACGGAGTTGTGGACTTAAAGATGAGGTGCCACGGAGTTGTGGGCTTT---------AAA
1 GGTGCCACGGAGTTGTGGGCTTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAAAA
** *
749579 GAGTGCCACGGAGTTGTGGAC-TTAAAAGGAACAA-
66 GAGTGCCACAAAGTTGTGGGCTTTAAAA-GAA-AAG
* ** * * *
749613 GGTGCCACGGAGTTGTGGGCTTTAAAGAAAAAATGCCACTGAGTCGTGGACTTTGA
1 GGTGCCACGGAGTTGTGGGC-TTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGA
749669 GACAAAATGC
Statistics
Matches: 293, Mismatches: 25, Indels: 55
0.79 0.07 0.15
Matches are distributed among these distances:
84 6 0.02
85 15 0.05
89 25 0.09
90 23 0.08
91 30 0.10
92 19 0.06
93 2 0.01
95 19 0.06
96 10 0.03
97 3 0.01
98 19 0.06
100 2 0.01
101 2 0.01
104 26 0.09
105 86 0.29
106 6 0.02
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.22
Consensus pattern (99 bp):
GGTGCCACGGAGTTGTGGGCTTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAAAA
GAGTGCCACAAAGTTGTGGGCTTTAAAAGAAAAG
Found at i:749472 original size:27 final size:28
Alignment explanation
Indices: 749401--749634 Score: 161
Period size: 27 Copynumber: 7.8 Consensus size: 28
749391 GAGAAAAAGA
749401 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG
1 GTGCCACGGAGTTGTGGGC-TTAAAC-G----AG
749435 GTGCCACGGAGTTGTGGGCTTAAACG-G
1 GTGCCACGGAGTTGTGGGCTTAAACGAG
* * *
749462 GTGCCACGGAGTTGTGGACTTAAATATGAAAAAA
1 GTGCCACGGAGTTGTGGGCTT-AA-ACG----AG
* * *
749496 GTGCCACAGAATTGTGGGCTTTAAAAG-G
1 GTGCCACGGAGTTGTGGGC-TTAAACGAG
* *
749524 GTGCCACGGAGTTGTGGACTTAAAGATGAG
1 GTGCCACGGAGTTGTGGGCTT-AA-ACGAG
749554 GTGCCACGGAGTTGTGGGCTTTAAA-GA-
1 GTGCCACGGAGTTGTGGGC-TTAAACGAG
* *
749581 GTGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTTGTGGGCTT---A--AACGAG
749614 GTGCCACGGAGTTGTGGGCTT
1 GTGCCACGGAGTTGTGGGCTT
749635 TAAAGAAAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 39
0.75 0.07 0.18
Matches are distributed among these distances:
26 2 0.01
27 41 0.25
28 22 0.13
29 6 0.04
30 21 0.13
31 4 0.02
32 2 0.01
33 28 0.17
34 37 0.22
35 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (28 bp):
GTGCCACGGAGTTGTGGGCTTAAACGAG
Found at i:749500 original size:61 final size:60
Alignment explanation
Indices: 749396--749639 Score: 320
Period size: 61 Copynumber: 4.1 Consensus size: 60
749386 GAAAAGAGAA
* *
749396 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGTTGTGGGC-TT
1 AAAGGGTGCCACGGAGTTGTGGAC-TTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * *
749456 AAACGGGTGCCACGGAGTTGTGGACTTAAATATGAAAAAAGTGCCACAGAATTGTGGGCTTT
1 AAA-GGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
749518 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATG----AGGTGCCACGGAGTTGTGGGCTTT
1 -AAAGGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * *
749576 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
749636 AAAG
1 AAAG
749640 AAAAAATGCC
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
56 2 0.01
57 28 0.17
58 21 0.13
60 37 0.23
61 42 0.26
62 31 0.19
63 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (60 bp):
AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
Found at i:749677 original size:30 final size:31
Alignment explanation
Indices: 749582--749764 Score: 167
Period size: 31 Copynumber: 5.8 Consensus size: 31
749572 CTTTAAAGAG
* * * **
749582 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACTGAGTCGTGGACTTTAAA-G-ACAAAA
* * * *
749615 TGCCACGGAGTTGTGGGCTTTAAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGACAAAA
*
749646 TGCCACTGAGTCGTGGACTTT-GAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGACAAAA
749676 TGCCACTGAGTCGTGGACTTTAAAGA-AAAGGA
1 TGCCACTGAGTCGTGGACTTTAAAGACAAA--A
* * *
749708 TGCCACTGCGTCGTGGACTTT-GAG-CAGAGAT
1 TGCCACTGAGTCGTGGACTTTAAAGACA-A-AA
749739 TGCCACTGAGTCGTGGACTTTAAAGA
1 TGCCACTGAGTCGTGGACTTTAAAGA
749765 GATTTGAAGA
Statistics
Matches: 126, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
30 31 0.25
31 47 0.37
32 25 0.20
33 23 0.18
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTAAAGACAAAA
Found at i:750810 original size:15 final size:12
Alignment explanation
Indices: 750775--750799 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
750765 AGATTTTCTG
750775 CTTTTTTTTTTT
1 CTTTTTTTTTTT
750787 CTTTTTTTTTTT
1 CTTTTTTTTTTT
750799 C
1 C
750800 CCCTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
CTTTTTTTTTTT
Found at i:751448 original size:52 final size:52
Alignment explanation
Indices: 751370--751497 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
751360 CGAAATATGA
*
751370 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
751422 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
751474 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
751498 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:751524 original size:13 final size:13
Alignment explanation
Indices: 751506--751530 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
751496 CAAAGATCAG
751506 TGTATCGATACAA
1 TGTATCGATACAA
751519 TGTATCGATACA
1 TGTATCGATACA
751531 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:751608 original size:33 final size:33
Alignment explanation
Indices: 751571--751637 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
751561 AGTAGCTTAA
751571 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
751604 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
751637 A
1 A
751638 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:751611 original size:13 final size:13
Alignment explanation
Indices: 751593--751617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
751583 CAAAAAAATA
751593 TGTATCGATACAT
1 TGTATCGATACAT
751606 TGTATCGATACA
1 TGTATCGATACA
751618 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:754706 original size:13 final size:13
Alignment explanation
Indices: 754688--754739 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
754678 AGCTTCCTAG
754688 CGATACATTGTAT
1 CGATACATTGTAT
754701 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
754720 CGATACATTGTAT
1 CGATACATTGTAT
754733 CGATACA
1 CGATACA
754740 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:754720 original size:19 final size:19
Alignment explanation
Indices: 754696--754781 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
754686 AGCGATACAT
754696 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
754715 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
754728 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
754747 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACT-TA
754768 TGTATCGATACAAA
1 TGTATCGATACAAA
754782 TTATTGGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
16 2 0.04
18 1 0.02
19 23 0.43
20 3 0.06
21 13 0.24
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:754729 original size:32 final size:32
Alignment explanation
Indices: 754688--754760 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
754678 AGCTTCCTAG
754688 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
754720 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
754752 CGATACATT
1 CGATACATT
754761 TACTGAATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:757417 original size:42 final size:44
Alignment explanation
Indices: 757354--757491 Score: 174
Period size: 49 Copynumber: 3.1 Consensus size: 44
757344 ACTTAAGATG
* * *
757354 AAGA-TGCCAATATGCTGATTCAAGGCCAGCGA-ATTGGTCTTA
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
757396 AAG-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
757439 AAGATAAAGTGGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
1 AAG----AGT-GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
757488 AAGA
1 AAGA
757492 TGGAAAAGGT
Statistics
Matches: 84, Mismatches: 4, Indels: 13
0.83 0.04 0.13
Matches are distributed among these distances:
42 29 0.35
43 12 0.14
45 1 0.01
48 2 0.02
49 40 0.48
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (44 bp):
AAGAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
Found at i:757579 original size:32 final size:35
Alignment explanation
Indices: 757537--757605 Score: 108
Period size: 32 Copynumber: 2.1 Consensus size: 35
757527 TATGGGGCTT
757537 AGAAGGGTTGCCACCGACTT-TGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
*
757570 AGAA-GGTTGCCACTGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
757604 AG
1 AG
757606 GGAGAAAGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 14 0.42
34 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.28
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:757681 original size:33 final size:34
Alignment explanation
Indices: 757590--757790 Score: 216
Period size: 33 Copynumber: 5.9 Consensus size: 34
757580 CACTGACTTG
* * * *
757590 TGTGGGCTTTAGGAAGGGAGAAAGAGCCACGGAGT
1 TGTGGGCTTTA-AAAGGAAAAAAGTGCCACGGAGT
* *
757625 T-TGGAC-TTAAAAGGAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAAGTGCCACGGAGT
*
757657 TGTGGGCTTTAAAA-GAAAAAAGTGCCACGGCGT
1 TGTGGGCTTTAAAAGGAAAAAAGTGCCACGGAGT
757690 TGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAA-AGTGCCACGGAGT
757726 TGTGGGC-TTAAACA-G-AAAAAGATGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAAG-TGCCACGGAGT
*
757759 TGTGGGCTTTAAAAAGGGAAAGGAAGTGCCAC
1 TGTGGGCTTT-AAAA-GGAAA-AAAGTGCCAC
757791 AAAGTGTAGG
Statistics
Matches: 142, Mismatches: 11, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
32 21 0.15
33 56 0.39
34 21 0.15
35 13 0.09
36 20 0.14
37 8 0.06
38 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.34, T:0.19
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGGAAAAAAGTGCCACGGAGT
Found at i:757712 original size:69 final size:68
Alignment explanation
Indices: 757610--757790 Score: 239
Period size: 69 Copynumber: 2.7 Consensus size: 68
757600 AGGAAGGGAG
*
757610 AAAGA-GCCACGGAGTT-TGGAC-TT-AAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-
1 AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAC
757670 AGAA
65 AGAA
* *
757674 AAA-AGTGCCACGGCGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAA
1 AAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGG-AAAAGAGTGCCACGGAGTTGTGGGCTTAAA
757738 CAGAA
64 CAGAA
*
757743 AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGGAAGTGCCAC
1 AAAGATGCCACGGAGTTGTGGGCTTTAAAAA-GGAAAAG-AGTGCCAC
757791 AAAGTGTAGG
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
63 1 0.01
64 3 0.03
65 10 0.10
66 4 0.04
67 2 0.02
68 11 0.11
69 60 0.59
70 11 0.11
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18
Consensus pattern (68 bp):
AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTAAACA
GAA
Found at i:757752 original size:102 final size:104
Alignment explanation
Indices: 757590--758021 Score: 388
Period size: 102 Copynumber: 4.0 Consensus size: 104
757580 CACTGACTTG
* * * * *
757590 TGTGGGCTTTAGG-AAGGGAGAAA-GAGCCACGGAGTT-TGGAC-TT-AAAAGGAAAAGAGTGCC
1 TGTGGGCTTT-GGAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGAGTGCC
* *
757650 ACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGCGT
65 ACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
757690 TGTGGGCTTT-GAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAACAGAAAAAGA-TGC
1 TGTGGGCTTTGGAAAAGGAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAA-AGAAAAAGAGTGC
* * **
757751 CACGGAGTTGTGGGCTTTAAAAAGGGAAAGGAAGTGCCACAAAGT
64 CACAGAGTTGTGGGCTTT-AAAA--GAAA-AAAGTGCCACGGAGT
*
757796 GTAGGTGCCACAGAGTTTGTGGGCTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 -T--GTG-----G-GCTT-T-GG---AAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTG-AAA
* * *
757860 AGAAAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCA-GGAGT
51 AG-AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
*
757914 TGTGGGCTTT-GAAAA-GAAGAAGGTGCCA-GGAGTTGTGGGCTTTGAAAGAGAAAAAGAGTGCC
1 TGTGGGCTTTGGAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAA-AGAAAAAGAGTGCC
*
757976 ACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGT
65 ACAGAGTTGTGGGCTTTAAA-AGAAAAAAGTGCCACGGAGT
758017 TGTGG
1 TGTGG
758022 CTTAAACGGG
Statistics
Matches: 279, Mismatches: 21, Indels: 61
0.77 0.06 0.17
Matches are distributed among these distances:
98 1 0.00
99 8 0.03
100 10 0.04
101 46 0.16
102 61 0.22
103 38 0.14
105 4 0.01
106 12 0.04
107 1 0.00
108 1 0.00
109 6 0.02
110 1 0.00
114 1 0.00
115 6 0.02
116 1 0.00
117 1 0.00
118 4 0.01
119 26 0.09
120 12 0.04
121 6 0.02
122 14 0.05
123 19 0.07
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (104 bp):
TGTGGGCTTTGGAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGAGTGCCA
CAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
Found at i:757873 original size:86 final size:86
Alignment explanation
Indices: 757714--757881 Score: 259
Period size: 86 Copynumber: 2.0 Consensus size: 86
757704 AGGAAAAAGA
* **
757714 GTGCCACGGAGTTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 GTGCCACAGAGTTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAA
*
757779 AGGAAGTGCCACAAAGTGTAG
66 AAGAAGTGCCACAAAGTGTAG
*
757800 GTGCCACAGAGTTTGTGGGCTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAA
1 GTGCCACAGAG-TTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTT-AAAAAGAA
757864 AAAAG-AGTGCCACAAAGT
64 AAAAGAAGTGCCACAAAGT
757882 TGTGGGCTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
86 52 0.69
87 23 0.31
ACGTcount: A:0.35, C:0.14, G:0.32, T:0.19
Consensus pattern (86 bp):
GTGCCACAGAGTTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAA
AAGAAGTGCCACAAAGTGTAG
Found at i:757923 original size:69 final size:68
Alignment explanation
Indices: 757798--758234 Score: 327
Period size: 69 Copynumber: 6.9 Consensus size: 68
757788 CACAAAGTGT
757798 AGGTGCCACAGAGTTTGTGGGC-TTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAG
1 AGGTGCCACAGAG-TTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAG
757862 AAAAA
65 -AAAA
* *
757867 AGAGTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCA-GGAGTTGTGGGCTTTG-AAAAG
1 AG-GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAG
*
757930 AAGA
65 AAAA
* * *
757934 AGGTGCCA-GGAGTTGTGGGCTTTGAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTT-AAAC
1 AGGTGCCACAGAGTTGTGGGCTTT-AAA-AGAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
757997 AGAAAA
63 AGAAAA
* * * *
758003 AGGTGCCACGGAGTTGT-GGC-TTAAACG-----GGTGCCACGGAGTTGTGGAC-TT-AAATATG
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAA-AAG
758059 AAAA
65 AAAA
* * *
758063 AAGTGCCACAGA-ATGTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGAC-TT---AAAG-
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGA
**
758117 ATG
66 AAA
* * * *
758120 AGGTGCCAC-GGGTTGTGGGCTTT--AAG----A-GTGCCACGGATTTGTGGAC-TT-AAAAGGA
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGA
*
758175 ACA
66 AAA
* * * * *
758178 AGGTGCCACGGAGTTGTGGGCTTT-AAAGAAAAA-ATGCCACTGAGTCGTGGACTTTGA
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGA
758235 GACAAAATGC
Statistics
Matches: 311, Mismatches: 33, Indels: 51
0.79 0.08 0.13
Matches are distributed among these distances:
55 23 0.07
56 1 0.00
57 22 0.07
58 12 0.04
59 22 0.07
60 38 0.12
61 29 0.09
64 16 0.05
65 15 0.05
66 11 0.04
67 15 0.05
68 13 0.04
69 58 0.19
70 36 0.12
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.22
Consensus pattern (68 bp):
AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGA
AAA
Found at i:757929 original size:155 final size:155
Alignment explanation
Indices: 757645--757929 Score: 441
Period size: 155 Copynumber: 1.8 Consensus size: 155
757635 AAGGAAAAGA
* * *
757645 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGCGTTGTGGGCTTTGAAAAGGAAA
1 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAA
**
757710 AAGAGTGCCACGGAGTTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAG
66 AAGAGTGCCACAAAGTTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAG
757775 GGAAAGGAAGTGCCACAAAGTGTAG
131 GGAAAGGAAGTGCCACAAAGTGTAG
*
757800 GTGCCACAGAGTTTGTGGGC-TTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAA
1 GTGCCACAGAG-TTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTG-AAAAGAA
* * *
757864 AAAAGAGTGCCACAAAGTTGTGGGCTTTAAA-AGAAGAAGGTGCCA-GGAGTTGTGGGCTTTGAA
64 AAAAGAGTGCCACAAAGTTGTGGGC-TTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAA
757927 AAG
128 AAG
757930 AAGAAGGTGC
Statistics
Matches: 118, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
155 64 0.54
156 49 0.42
157 5 0.04
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.20
Consensus pattern (155 bp):
GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAA
AAGAGTGCCACAAAGTTGTGGGCTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAG
GGAAAGGAAGTGCCACAAAGTGTAG
Found at i:758017 original size:34 final size:33
Alignment explanation
Indices: 757798--758232 Score: 347
Period size: 33 Copynumber: 13.7 Consensus size: 33
757788 CACAAAGTGT
*
757798 AGGTGCCACAGAGTTTGTGGGC-TTAAAAGAAAA
1 AGGTGCCACGGAG-TTGTGGGCTTTAAAAGAAAA
757831 AGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT--AAAAG-AAAA
** *
757867 AGAGTGCCACAAAGTTGTGGGCTTTAAAAGAAGA
1 AG-GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
*
757901 AGGTGCCA-GGAGTTGTGGGCTTTGAAAAGAAGA
1 AGGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAA
757934 AGGTGCCA-GGAGTTGTGGGCTTTGAAAGAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT-AAA-AGAAAA
*
757968 AGAGTGCCACAGAGTTGTGGGCTTTAAACAGAAAA
1 AG-GTGCCACGGAGTTGTGGGCTTTAAA-AGAAAA
*
758003 AGGTGCCACGGAGTTGT-GGC-TTAAACG----
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
*
758030 -GGTGCCACGGAGTTGTGGAC-TTAAATATGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAA-A-GAAAA
* * *
758063 AAGTGCCACAGA-ATGTGGGCTTTAAAAG----
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* **
758091 -GGTGCCACGGAGTTGTGGAC-TT-AAAG-ATG
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
758120 AGGTGCCACGG-GTTGTGGGCTTT--AAG----
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* * *
758146 A-GTGCCACGGATTTGTGGAC-TTAAAAGGAACA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAA
758178 AGGTGCCACGGAGTTGTGGGCTTT-AAAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* * * *
758210 A-ATGCCACTGAGTCGTGGACTTT
1 AGGTGCCACGGAGTTGTGGGCTTT
758233 GAGACAAAAT
Statistics
Matches: 337, Mismatches: 31, Indels: 70
0.77 0.07 0.16
Matches are distributed among these distances:
25 11 0.03
26 28 0.08
27 20 0.06
28 7 0.02
29 12 0.04
30 12 0.04
31 19 0.06
32 33 0.10
33 86 0.26
34 42 0.12
35 27 0.08
36 20 0.06
37 20 0.06
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.22
Consensus pattern (33 bp):
AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
Found at i:758040 original size:26 final size:27
Alignment explanation
Indices: 758004--758170 Score: 108
Period size: 26 Copynumber: 5.9 Consensus size: 27
757994 AACAGAAAAA
758004 GGTGCCACGGAGTTGTGG-CTTAAACG
1 GGTGCCACGGAGTTGTGGACTTAAACG
*
758030 GGTGCCACGGAGTTGTGGACTTAAATATG
1 GGTGCCACGGAGTTGTGGACTT-AA-ACG
* * * * *
758059 AAAAAAGTGCCACAGA-ATGTGGGCTTTAAAAG
1 -----GGTGCCACGGAGTTGTGGAC-TTAAACG
*
758091 GGTGCCACGGAGTTGTGGACTTAAAGATG
1 GGTGCCACGGAGTTGTGGACTT-AA-ACG
* *
758120 AGGTGCCACGG-GTTGTGGGCTTTAA-G
1 -GGTGCCACGGAGTTGTGGACTTAAACG
* *
758146 AGTGCCACGGATTTGTGGACTTAAA
1 GGTGCCACGGAGTTGTGGACTTAAA
758171 AGGAACAAGG
Statistics
Matches: 110, Mismatches: 17, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
25 9 0.08
26 30 0.27
27 15 0.14
28 11 0.10
29 14 0.13
30 10 0.09
32 2 0.02
33 8 0.07
34 11 0.10
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.25
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAAACG
Found at i:758069 original size:60 final size:59
Alignment explanation
Indices: 757966--758205 Score: 253
Period size: 60 Copynumber: 4.1 Consensus size: 59
757956 TGAAAGAGAA
* * *
757966 AAAGAGTGCCACAGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGTTGT-GGCTT
1 AAAGGGTGCCACGGAGTTGTGGAC-TTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTT
* * *
758025 AAACGGGTGCCACGGAGTTGTGGACTTAAATATGAAAAAAGTGCCACAGA-ATGTGGGCTTT
1 AAA-GGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGC-TT
758086 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATG----AGGTGCCACGG-GTTGTGGGCTT
1 -AAAGGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTT
* * * * *
758142 TAAGAGTGCCACGGATTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGC-TT
758202 AAAG
1 AAAG
758206 AAAAAATGCC
Statistics
Matches: 153, Mismatches: 16, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
54 2 0.01
55 26 0.17
56 2 0.01
57 16 0.10
58 11 0.07
59 21 0.14
60 41 0.27
61 31 0.20
62 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (59 bp):
AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTT
Found at i:758169 original size:25 final size:27
Alignment explanation
Indices: 758091--758169 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 27
758081 GCTTTAAAAG
758091 GGTGCCACGGAGTTGTGGACTTAAAGATGA
1 GGTGCCACGGAGTTGTGGACTT--A-ATGA
*
758121 GGTGCCACGG-GTTGTGGGCTTTAA-GA
1 GGTGCCACGGAGTTGTGGAC-TTAATGA
*
758147 -GTGCCACGGATTTGTGGACTTAA
1 GGTGCCACGGAGTTGTGGACTTAA
758170 AAGGAACAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
25 13 0.30
26 9 0.20
27 1 0.02
28 1 0.02
29 8 0.18
30 12 0.27
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.27
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAATGA
Found at i:758243 original size:30 final size:31
Alignment explanation
Indices: 758181--758324 Score: 133
Period size: 29 Copynumber: 4.8 Consensus size: 31
758171 AGGAACAAGG
* * * *
758181 TGCCACGGAGTTGTGGGCTTTAAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGACAAAA
*
758212 TGCCACTGAGTCGTGGACTTT-GAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGACAAAA
*
758242 TG-CACTGAGTCGTGGACTTTAAAGA-AAGGA
1 TGCCACTGAGTCGTGGACTTTAAAGACAA-AA
* * *
758272 TGCCACTGCGT-GTGGACTTT-GAG-CAGAGA
1 TGCCACTGAGTCGTGGACTTTAAAGACA-AAA
758301 TGCCACTGA-TC-TGGACTTTAAAGA
1 TGCCACTGAGTCGTGGACTTTAAAGA
758325 GATTGAAGAA
Statistics
Matches: 94, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
28 9 0.10
29 35 0.37
30 25 0.27
31 25 0.27
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTAAAGACAAAA
Found at i:758275 original size:60 final size:60
Alignment explanation
Indices: 758181--758324 Score: 179
Period size: 60 Copynumber: 2.4 Consensus size: 60
758171 AGGAACAAGG
* * *
758181 TGCCACGGAGTTGTGGGCTTTAAAGAAAAAATGCCACTGAGTCGTGGACTTTGAGACA-AAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAATGCCACTGAGT-GTGGACTTTGAG-CAGAAA
** * *
758242 TG-CACTGAGTCGTGGACTTTAAAGAAAGGATGCCACTGCGTGTGGACTTTGAGCAGAGA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAATGCCACTGAGTGTGGACTTTGAGCAGAAA
758301 TGCCACTGA-TC-TGGACTTTAAAGA
1 TGCCACTGAGTCGTGGACTTTAAAGA
758325 GATTGAAGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
58 15 0.20
59 18 0.24
60 39 0.53
61 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (60 bp):
TGCCACTGAGTCGTGGACTTTAAAGAAAAAATGCCACTGAGTGTGGACTTTGAGCAGAAA
Found at i:760004 original size:50 final size:51
Alignment explanation
Indices: 759896--760016 Score: 194
Period size: 51 Copynumber: 2.4 Consensus size: 51
759886 CGAAATATGA
*
759896 AAATTTGCCTGCA-GTATCGATACATTTAATAGTGATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGATCGATACATCTGGGC
759946 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTTAATAATGATCGATACATCTGGGC
*
759997 AAA-TTGCCGGCATGTATCGA
1 AAATTTGCCTGCATGTATCGA
760017 AAAAGATCAG
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
50 29 0.43
51 33 0.49
52 5 0.07
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGATCGATACATCTGGGC
Found at i:760045 original size:13 final size:13
Alignment explanation
Indices: 760027--760051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
760017 AAAAGATCAG
760027 TGTATCGATACAA
1 TGTATCGATACAA
760040 TGTATCGATACA
1 TGTATCGATACA
760052 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:760112 original size:18 final size:19
Alignment explanation
Indices: 760089--760125 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
760079 GGCAGTAGCT
760089 AAAAAT-TGTATCGATACA
1 AAAAATATGTATCGATACA
760107 AAAAATATGTATCGATACA
1 AAAAATATGTATCGATACA
760126 TTGTATCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (19 bp):
AAAAATATGTATCGATACA
Found at i:760132 original size:13 final size:13
Alignment explanation
Indices: 760114--760138 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
760104 ACAAAAAATA
760114 TGTATCGATACAT
1 TGTATCGATACAT
760127 TGTATCGATACA
1 TGTATCGATACA
760139 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:760134 original size:32 final size:33
Alignment explanation
Indices: 760093--760158 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
760083 GTAGCTAAAA
760093 ATTGTATCGATACAA-AAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
760125 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
760158 A
1 A
760159 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:763189 original size:12 final size:12
Alignment explanation
Indices: 763172--763196 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
763162 TACAAAACTT
763172 ATGTATCGATAC
1 ATGTATCGATAC
763184 ATGTATCGATAC
1 ATGTATCGATAC
763196 A
1 A
763197 ACACTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:763207 original size:18 final size:19
Alignment explanation
Indices: 763184--763235 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
763174 GTATCGATAC
763184 ATGTATCGATACAACACT-
1 ATGTATCGATACAACACTA
**
763202 ATGTATCGATACATTACTGA
1 ATGTATCGATACAACACT-A
763222 ATGTATCGATACAA
1 ATGTATCGATACAA
763236 ATTATTGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 16 0.55
20 13 0.45
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAACACTA
Found at i:763207 original size:30 final size:31
Alignment explanation
Indices: 763146--763215 Score: 115
Period size: 30 Copynumber: 2.3 Consensus size: 31
763136 AGCTTCCTAG
763146 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACA-TGTATCGATACAAAACTTATGTAT
*
763178 CGATACATGTATCGATACAACAC-TATGTAT
1 CGATACATGTATCGATACAAAACTTATGTAT
763208 CGATACAT
1 CGATACAT
763216 TACTGAATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
30 15 0.41
31 15 0.41
32 7 0.19
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (31 bp):
CGATACATGTATCGATACAAAACTTATGTAT
Found at i:764423 original size:52 final size:52
Alignment explanation
Indices: 764345--764472 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
764335 CGAAATATGA
*
764345 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
764397 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
764449 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
764473 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:764499 original size:13 final size:13
Alignment explanation
Indices: 764481--764505 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
764471 CAAAGATCAG
764481 TGTATCGATACAA
1 TGTATCGATACAA
764494 TGTATCGATACA
1 TGTATCGATACA
764506 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:764583 original size:33 final size:33
Alignment explanation
Indices: 764546--764612 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
764536 AGTAGCTTAA
764546 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
764579 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
764612 A
1 A
764613 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:764586 original size:13 final size:13
Alignment explanation
Indices: 764568--764592 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
764558 CAAAAAAATA
764568 TGTATCGATACAT
1 TGTATCGATACAT
764581 TGTATCGATACA
1 TGTATCGATACA
764593 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:765449 original size:56 final size:52
Alignment explanation
Indices: 765365--765996 Score: 557
Period size: 49 Copynumber: 13.0 Consensus size: 52
765355 GAAAAGTGAT
* * * * * *
765365 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGATGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG--G-A
* * * *
765420 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
765473 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
765516 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGGT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
765566 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
765614 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
765663 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
765712 -ATGATGCCAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
765754 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
765804 -AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
765846 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
765895 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
765947 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA-ATGG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
765997 TTGCCACCGA
Statistics
Matches: 500, Mismatches: 50, Indels: 58
0.82 0.08 0.10
Matches are distributed among these distances:
43 108 0.22
44 3 0.01
46 1 0.00
48 48 0.10
49 215 0.43
51 5 0.01
52 73 0.15
53 6 0.01
54 1 0.00
55 4 0.01
56 36 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
Found at i:765513 original size:175 final size:169
Alignment explanation
Indices: 765145--765519 Score: 409
Period size: 169 Copynumber: 2.2 Consensus size: 169
765135 CCACTGTGCA
* * * * * * * *
765145 GATTCAAGGCCTGCCACACTGGACTTAAAGATGATGA-GCATGAAGAGCGATAAA-AGGACCAAT
1 GATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATG-A-GAAAAGTGATAAAGATG-CCAAT
765208 ACGTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGC
63 ACGTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGC
* * * *
765273 GGCTAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCT
128 GGCCAGCGACATTGAACTTAAAGATAAAGGTGCCAATATGCT
*
765315 GATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGAGAAAAGTGATAAAGATGCCAATATG
1 GATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGAGAAAAGTGATAAAGATGCCAATACG
* * * **
765380 TTGATTCACGGCCAACGATATTGGGCTT-AAAGATGATGAAAAAGGATGTCAATGTGCTGAT-T-
66 TTGATTCACGGCCAACGATATTGGG-TTCAAAGATGA-GAAAAAGGA--TAAAAGAGCCAATATG
* *
765442 CAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCT
127 C--GGCCAGCGACATTGAACTTAAAGAT---AAAGGTGCCAATATGCT
* *
765490 GATTCAAGGCCAGCTATATTGGACTTAAAG
1 GATTCAAGGCCAGCGACATTGGACTTAAAG
765520 GTGCCAATGT
Statistics
Matches: 172, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
169 51 0.30
170 47 0.27
171 2 0.01
172 29 0.17
175 43 0.25
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.22
Consensus pattern (169 bp):
GATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGAGAAAAGTGATAAAGATGCCAATACG
TTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGGC
CAGCGACATTGAACTTAAAGATAAAGGTGCCAATATGCT
Found at i:765638 original size:49 final size:49
Alignment explanation
Indices: 765429--765992 Score: 725
Period size: 49 Copynumber: 11.8 Consensus size: 49
765419 AAAAGGATGT
*
765429 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
765481 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
765524 CAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
765572 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
765621 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
765670 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
765719 CAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
765762 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
765811 CAATATGCTGATTCAAGGCCAGCGATATTGGTCTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
765854 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
765903 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
765955 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
765993 ATGGTTGCCA
Statistics
Matches: 449, Mismatches: 41, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
43 111 0.25
45 2 0.00
47 2 0.00
48 47 0.10
49 215 0.48
52 72 0.16
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:765799 original size:141 final size:139
Alignment explanation
Indices: 765473--765992 Score: 637
Period size: 141 Copynumber: 3.7 Consensus size: 139
765463 TAAAGATGGA
* * * * *
765473 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
765532 TGATTCAAGGCCAGCTACATTGGGCTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
66 TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGA-GTGCCAATGTGCTGATTCAAGGCCAGCTA
765597 CATTGGACTT
130 CATTGGACTT
765607 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
* * * *
765672 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAAGG
60 ATATGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGA-G-TGCCAATGTGCTGATTCAAGG
* * *
765737 CCAACGATATTGGACTT
123 CCAGCTACATTGGACTT
* *
765754 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
765819 TGATTCAAGGCCAGCGATATTGGTCTT-AA-A-G-GTGCCAATGTGCTGATTCAAGGCCAGCTAC
66 TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
765880 ATTGGACTTAAAGAT
131 ATTGGAC-T-----T
765895 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
*
765960 TGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
63 TGCTGATTCAAGGCCAGCTACATTGGGCTTAAA
765993 ATGGTTGCCA
Statistics
Matches: 336, Mismatches: 27, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
135 32 0.10
136 2 0.01
138 2 0.01
139 1 0.00
140 40 0.12
141 133 0.40
142 1 0.00
143 1 0.00
144 40 0.12
145 2 0.01
146 48 0.14
147 34 0.10
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (139 bp):
AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
ATTGGACTT
Found at i:765810 original size:92 final size:92
Alignment explanation
Indices: 765473--765941 Score: 626
Period size: 92 Copynumber: 5.0 Consensus size: 92
765463 TAAAGATGGA
* * *
765473 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
*
765532 TGATTCAAGGCCAGCTACATTGGGCTT
66 TGATTCAAGGCCAGCTACATTGGACTT
*
765559 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAA
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAA
*
765624 TGTGCTGAGTCAAGGCCAGCTACATTGGACTT
61 TGTGCTGATTCAAGGCCAGCTACATTGGACTT
* *
765656 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCA
* * * *
765721 ATATGCTGATTCAAGGCCAACGATATTGGACTT
60 ATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
765754 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
* * *
765819 TGATTCAAGGCCAGCGATATTGGTCTT
66 TGATTCAAGGCCAGCTACATTGGACTT
* *
765846 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
*
765911 TGAGTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTACATTGGACTT
765938 AAAG
1 AAAG
765942 ATGGAAAAGG
Statistics
Matches: 342, Mismatches: 25, Indels: 25
0.87 0.06 0.06
Matches are distributed among these distances:
87 2 0.01
91 38 0.11
92 178 0.52
93 1 0.00
94 2 0.01
96 1 0.00
97 36 0.11
98 82 0.24
100 1 0.00
102 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATGTGC
TGATTCAAGGCCAGCTACATTGGACTT
Found at i:766034 original size:33 final size:34
Alignment explanation
Indices: 765995--766059 Score: 114
Period size: 33 Copynumber: 1.9 Consensus size: 34
765985 GGCTTAAAAT
765995 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAGAA
*
766028 GGTTGCCACTGACTTGTGTGGGCTTTAGGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG
766060 GGAGAAAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 25 0.83
34 5 0.17
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (34 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGGAAGAA
Found at i:766102 original size:34 final size:33
Alignment explanation
Indices: 766064--766696 Score: 327
Period size: 34 Copynumber: 18.6 Consensus size: 33
766054 AGGAAGGGAG
*
766064 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAA-GGAA
*
766098 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
766133 AAAG-TGCCACGGCGTTGTGGGCTTTGAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
766168 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAA-AGGAA
766203 AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
* ** * * *
766239 AGAGAGTGCCACAAAGTTGTAGGTGC-CACAGAGTTGTGGGCTTTA
1 AAAGA-TGCCACGGAGTTGT-GG-GCTTA-A-A-----AGG---AA
*
766284 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
1 AAAG----A--TGCCACGGAGTTGTGGGC-TT--AAAAGGAA
**
766326 AAAGAGTGCCACAAAGTTGTGGGCTTTAAAA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
766360 GAAGGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAA
1 -AAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* *
766395 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAAG-GAA
766431 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAA-AGGAA
* *
766466 AAAGGTGCCACGGAGTTGTGGGCTTAAACGG--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
766497 ---G-TGCCACGGAGTTGTGGACTTAAATATGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAA-AGGAA
* *
766527 AAA-AGTGCCACAGAATTGTGGGCTTTAAAAGG--
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
766559 ---G-TGCCACGGAGTTGTGGACTT-AAA-G-A
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
** * *
766585 TGAGGTGCCACGGAGTTGTGGGCTTTAAA-G--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
*
766615 --AG-TGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
766645 CAAGGTGCCACGGAGTTGTGGGCTTTAAA-GAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
766677 AAA-ATGCCACTGAGTCGTGG
1 AAAGATGCCACGGAGTTGTGG
766697 ACTTTGAGAC
Statistics
Matches: 488, Mismatches: 50, Indels: 125
0.74 0.08 0.19
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 46 0.09
28 20 0.04
29 1 0.00
30 19 0.04
31 18 0.04
32 7 0.01
33 48 0.10
34 116 0.24
35 68 0.14
36 26 0.05
37 76 0.16
38 4 0.01
39 2 0.00
42 7 0.01
45 5 0.01
48 2 0.00
49 3 0.01
50 14 0.03
51 1 0.00
52 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.21
Consensus pattern (33 bp):
AAAGATGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:766119 original size:71 final size:71
Alignment explanation
Indices: 766044--766701 Score: 424
Period size: 71 Copynumber: 9.6 Consensus size: 71
766034 CACTGACTTG
* * *
766044 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTA--AAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGC
766107 CACGGAGT
64 CACGGAGT
* * *
766115 TGTGGGCTTTAAAAGAAAAAAG-TGCCACGGCGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
766179 CGGAGT
66 CGGAGT
*
766185 TGTGGGCTTTAAACA-GAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCC
1 TGTGGGCTTTAAA-AGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCC
**
766249 ACAAAGT
65 ACGGAGT
*** ** *
766256 TGTAGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 TGT-GG-GCTTTA-A----AAGG-----AAA----AAGATGCCACGGAGTTGTGGGCTTT-AAAA
* **
766321 A-GAAAAAAGAGTGCCACAAAGT
49 AGGGAAAAAGAGTGCCACGGAGT
* * * *
766343 TGTGGGCTTTAAAA-GAAGAAGGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAG-GTGCC
1 TGTGGGCTTTAAAAGGAA-AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCC
766404 ACGGAGT
65 ACGGAGT
*
766411 TGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA--GAAAAAG-GTG
1 TGTGGGCTTT-AAAAG-GAAAAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTG
766473 CCACGGAGT
63 CCACGGAGT
* * * *
766482 TGTGGGC-TTAAACGG-----G-TGCCACGGAGTTGTGGAC-TTAAATA-TGAAAAA-AGTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
* *
766537 CAGAAT
66 CGGAGT
* **
766543 TGTGGGCTTTAAAAGG-----G-TGCCACGGAGTTGTGGAC-TT--AAA--G-ATGAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
766595 CGGAGT
66 CGGAGT
* *
766601 TGTGGGCTTT-AAA-G----AG-TGCCACGGAGTTGTGGAC-TT-AAAA-GGAACAAG-GTGCCA
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
766655 CGGAGT
66 CGGAGT
* * *
766661 TGTGGGCTTT-AAA-GAAAAA-ATGCCACTGAGTCGTGGACTTT
1 TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTT
766702 GAGACAAAAT
Statistics
Matches: 496, Mismatches: 50, Indels: 88
0.78 0.08 0.14
Matches are distributed among these distances:
56 1 0.00
57 24 0.05
58 25 0.05
59 2 0.00
60 37 0.07
61 40 0.08
62 28 0.06
63 1 0.00
64 17 0.03
65 2 0.00
68 37 0.07
69 23 0.05
70 54 0.11
71 134 0.27
72 2 0.00
73 3 0.01
74 3 0.01
75 1 0.00
78 1 0.00
79 1 0.00
83 3 0.01
84 1 0.00
85 3 0.01
86 2 0.00
87 46 0.09
88 5 0.01
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (71 bp):
TGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCA
CGGAGT
Found at i:766332 original size:87 final size:88
Alignment explanation
Indices: 766173--766345 Score: 287
Period size: 87 Copynumber: 2.0 Consensus size: 88
766163 GGGAAAAAGA
* *
766173 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGGA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAA
*
766238 AAGAGAGTGCCACAAAGTTGTAG
66 AAAAGAGTGCCACAAAGTTGTAG
*
766261 GTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAA-GA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTT-AAAAAGGA
766324 AAAAAGAGTGCCACAAAGTTGT
65 AAAAAGAGTGCCACAAAGTTGT
766346 GGGCTTTAAA
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
87 51 0.64
88 29 0.36
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (88 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGGAA
AAAAGAGTGCCACAAAGTTGTAG
Found at i:766392 original size:158 final size:158
Alignment explanation
Indices: 766103--766392 Score: 474
Period size: 158 Copynumber: 1.8 Consensus size: 158
766093 GGGAAAAAGA
* * * *
766103 GTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGCGTTGTGGGCTTTGAAAAGGGAA
1 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
**
766168 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA
66 AAAGAGTGCCACAAAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA
766233 AGGGAAAGAGAGTGCCACAAAGTTGTAG
131 AGGGAAAGAGAGTGCCACAAAGTTGTAG
*
766261 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
1 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
* * *
766326 AAAGAGTGCCACAAAGTTGTGGGCTTTAAA-AGAAGAAGGGTGCCACGGAGTTGTGGGCTTTGAA
66 AAAGAGTGCCACAAAGTTGTGGGCTTTAAACAGAA-AAAGATGCCACGGAGTTGTGGGCTTTAAA
766390 AAG
130 AAG
766393 AAGAAGGTGC
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
157 4 0.03
158 117 0.97
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (158 bp):
GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAA
AAAGAGTGCCACAAAGTTGTGGGCTTTAAACAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA
AGGGAAAGAGAGTGCCACAAAGTTGTAG
Found at i:766441 original size:105 final size:99
Alignment explanation
Indices: 766260--766703 Score: 412
Period size: 105 Copynumber: 4.6 Consensus size: 99
766250 CAAAGTTGTA
* *
766260 GGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAA
1 GGTGCCACGGAGTTGTGGGC-TT-AAAG-AAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAAG-A
766325 AAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAG
62 AAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAA-AAG
766364 GGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAG
1 GGTGCCACGGAGTTGTGGGC-TT--AAAGAAG-AGGTGCCACGGAGTTGTGGGCTTTGAAAA-AG
** *
766429 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAA
61 AAAAAGAGTGCCACAAAGTTGTGGGCTTTAAA-AGAAAAG
* * *
766469 GGTGCCACGGAGTTGTGGGCTT-AA-ACG-GGTGCCACGGAGTTGTGGAC-TT-AAATATGAAAA
1 GGTGCCACGGAGTTGTGGGCTTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGAAA-AAGAAAA
766529 A-AGTGCCACAGAA-TTGTGGGCTTT-----AAAAG
65 AGAGTGCCACA-AAGTTGTGGGCTTTAAAAGAAAAG
* *
766558 GGTGCCACGGAGTTGTGGACTTAAAGATGAGGTGCCACGGAGTTGTGGGCTTT---------AAA
1 GGTGCCACGGAGTTGTGGGCTTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAAAA
** *
766614 GAGTGCCACGGAGTTGTGGAC-TTAAAAGGAACAA-
66 GAGTGCCACAAAGTTGTGGGCTTTAAAA-GAA-AAG
* ** * * *
766648 GGTGCCACGGAGTTGTGGGCTTTAAAGAAAAAATGCCACTGAGTCGTGGACTTTGA
1 GGTGCCACGGAGTTGTGGGC-TTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGA
766704 GACAAAATGC
Statistics
Matches: 293, Mismatches: 25, Indels: 55
0.79 0.07 0.15
Matches are distributed among these distances:
84 6 0.02
85 15 0.05
89 25 0.09
90 23 0.08
91 30 0.10
92 19 0.06
93 2 0.01
95 19 0.06
96 10 0.03
97 3 0.01
98 19 0.06
100 2 0.01
101 2 0.01
104 26 0.09
105 86 0.29
106 6 0.02
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.22
Consensus pattern (99 bp):
GGTGCCACGGAGTTGTGGGCTTAAAGAAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGAAAAA
GAGTGCCACAAAGTTGTGGGCTTTAAAAGAAAAG
Found at i:766507 original size:27 final size:28
Alignment explanation
Indices: 766436--766669 Score: 161
Period size: 27 Copynumber: 7.8 Consensus size: 28
766426 GAGAAAAAGA
766436 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG
1 GTGCCACGGAGTTGTGGGC-TTAAAC-G----AG
766470 GTGCCACGGAGTTGTGGGCTTAAACG-G
1 GTGCCACGGAGTTGTGGGCTTAAACGAG
* * *
766497 GTGCCACGGAGTTGTGGACTTAAATATGAAAAAA
1 GTGCCACGGAGTTGTGGGCTT-AA-ACG----AG
* * *
766531 GTGCCACAGAATTGTGGGCTTTAAAAG-G
1 GTGCCACGGAGTTGTGGGC-TTAAACGAG
* *
766559 GTGCCACGGAGTTGTGGACTTAAAGATGAG
1 GTGCCACGGAGTTGTGGGCTT-AA-ACGAG
766589 GTGCCACGGAGTTGTGGGCTTTAAA-GA-
1 GTGCCACGGAGTTGTGGGC-TTAAACGAG
* *
766616 GTGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTTGTGGGCTT---A--AACGAG
766649 GTGCCACGGAGTTGTGGGCTT
1 GTGCCACGGAGTTGTGGGCTT
766670 TAAAGAAAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 39
0.75 0.07 0.18
Matches are distributed among these distances:
26 2 0.01
27 41 0.25
28 22 0.13
29 6 0.04
30 21 0.13
31 4 0.02
32 2 0.01
33 28 0.17
34 37 0.22
35 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (28 bp):
GTGCCACGGAGTTGTGGGCTTAAACGAG
Found at i:766535 original size:61 final size:60
Alignment explanation
Indices: 766431--766674 Score: 320
Period size: 61 Copynumber: 4.1 Consensus size: 60
766421 GAAAAGAGAA
* *
766431 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGTTGTGGGC-TT
1 AAAGGGTGCCACGGAGTTGTGGAC-TTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * *
766491 AAACGGGTGCCACGGAGTTGTGGACTTAAATATGAAAAAAGTGCCACAGAATTGTGGGCTTT
1 AAA-GGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
766553 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATG----AGGTGCCACGGAGTTGTGGGCTTT
1 -AAAGGGTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * *
766611 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
766671 AAAG
1 AAAG
766675 AAAAAATGCC
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
56 2 0.01
57 28 0.17
58 21 0.13
60 37 0.23
61 42 0.26
62 31 0.19
63 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (60 bp):
AAAGGGTGCCACGGAGTTGTGGACTTAAAATGAAAAAGGTGCCACGGAGTTGTGGGCTTT
Done.