Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1763736
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 1 of 14
Found at i:843 original size:61 final size:60
Alignment explanation
Indices: 551--870 Score: 243
Period size: 60 Copynumber: 5.2 Consensus size: 60
541 ATTGGGGACG
** * * * *
551 AATTGGTGGCACCTATCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
1 AATTGGTGGCACCT-TTTAGTCCTCAAAGAGCAGGAC-GCTTTTTCTTTCAAAGCCCACGCA
* * * * * * *
613 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCCTTTTAACTAACGCAGGCA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CTTTTT-CTTTCAA--AGCCCACGCA
* * * * * * *
677 AGTTTAGTGGCAGCTTTTAGTCCTAAAAGAGC-CGATGCCTTTTCTTTTCAAAGCCCTTACG--
1 A-ATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTC-TTTCAAAGCCC--ACGCA
* *
738 AGTTGGTGGCACCTTTTAGTCCTC-AAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CTTTTTCTTTCAAAGCCCACGCA
* * * * *
798 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACAGCCTTTTCTTTTCAAAGCCCACACA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-GCTTTTTC-TTTCAAAGCCCACGCA
*
860 AATTGGGGGCA
1 AATTGGTGGCA
871 AAGCTTTCCA
Statistics
Matches: 203, Mismatches: 40, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
58 3 0.01
59 6 0.03
60 54 0.27
61 49 0.24
62 46 0.23
63 12 0.06
64 8 0.04
65 25 0.12
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (60 bp):
AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTCTTTCAAAGCCCACGCA
Found at i:1282 original size:60 final size:60
Alignment explanation
Indices: 1187--1394 Score: 265
Period size: 60 Copynumber: 3.5 Consensus size: 60
1177 AATTGGTGCC
* * * *
1187 AGTCCTTAAAGAGCGGGACATCTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGTCTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
* * * **
1247 AGTCCTCAAAGAGCAGGACGTCTTTTTCTTT-AAAGCCCACGCAAGTTAGTTTCACCTTTT
1 AGTCCTCAAAGAGCAGGACGTC-TTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
* *
1307 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGTCTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
* * *
1368 AGTCCTCAAAGACCAGGATGCCTTTTC
1 AGTCCTCAAAGAGCAGGACGTCTTTTC
1395 CTCTTCCCTC
Statistics
Matches: 127, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
59 5 0.04
60 66 0.52
61 56 0.44
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGTCTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
Found at i:1747 original size:40 final size:42
Alignment explanation
Indices: 1649--1748 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
1639 GACGTGTTCT
*
1649 TTTTCACTTTGTCCTCAAGAAGCAGGACACTTTTCATTTCTTT
1 TTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTTCATTTCTTC
* *
1692 TTTTCCTTTGTCCTCAAGGAG-TGAGAC-CTATTTCA-TT-TTC
1 TTTTCCTTTGTCCTCAAGAAGCAG-GACACT-TTTCATTTCTTC
1732 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
1749 AAAGTGGGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
40 19 0.37
41 5 0.10
42 23 0.44
43 5 0.10
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.46
Consensus pattern (42 bp):
TTTTCCTTTGTCCTCAAGAAGCAGGACACTTTTCATTTCTTC
Found at i:2242 original size:61 final size:61
Alignment explanation
Indices: 2137--2443 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
2127 AGGTATGGGG
* ** * *
2137 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
2198 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2259 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2320 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2381 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2442 AC
1 AC
2444 AAATTGGGGG
Statistics
Matches: 201, Mismatches: 42, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 183 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2362 original size:122 final size:122
Alignment explanation
Indices: 2140--2443 Score: 394
Period size: 122 Copynumber: 2.5 Consensus size: 122
2130 TATGGGGACG
* * * * ** *
2140 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2204 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2262 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2327 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2384 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2444 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 153 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2861 original size:61 final size:61
Alignment explanation
Indices: 2756--2976 Score: 273
Period size: 61 Copynumber: 3.6 Consensus size: 61
2746 AGGTATGGGG
* ** * * * *
2756 ACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGGCATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
2817 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * ** *
2878 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
2939 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2977 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.04
61 129 0.96
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:3045 original size:45 final size:45
Alignment explanation
Indices: 2989--3187 Score: 137
Period size: 45 Copynumber: 4.5 Consensus size: 45
2979 CCTTTTCCTC
* *
2989 TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * * *
3034 TTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCC-AC-T
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTT
* * * * * * *
3078 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTCGTTT--TCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * *
3119 TTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCATTTCCTTTTT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCATTTCCTTCTT
*
3164 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
3188 AGACACATTT
Statistics
Matches: 115, Mismatches: 27, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 24 0.21
43 23 0.20
44 6 0.05
45 37 0.32
46 18 0.16
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (45 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
Found at i:3115 original size:42 final size:41
Alignment explanation
Indices: 3038--3122 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
3028 CTTCTTTTCC
* * * *
3038 CTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCCACTTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCA-TTT
*
3080 CTTTTATCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCATTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTT-ATTTTCCATTT
3121 CT
1 CT
3123 CCTTTGTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.22
42 29 0.78
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (41 bp):
CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCATTT
Found at i:3830 original size:61 final size:61
Alignment explanation
Indices: 3725--4030 Score: 323
Period size: 61 Copynumber: 5.0 Consensus size: 61
3715 AGGTATGGGG
* ** * * *
3725 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * *
3786 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCA-C
* * * * * * *
3848 A--AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
3907 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
3968 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
4029 AC
1 AC
4031 AAATTGGGGG
Statistics
Matches: 202, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
59 8 0.04
60 45 0.22
61 141 0.70
62 8 0.04
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:3947 original size:121 final size:122
Alignment explanation
Indices: 3728--4030 Score: 385
Period size: 121 Copynumber: 2.5 Consensus size: 122
3718 TATGGGGACG
* * * * ** *
3728 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * *
3792 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCA-GCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
3849 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
3914 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
3971 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAACCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
4031 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
121 100 0.65
122 53 0.35
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:4444 original size:616 final size:618
Alignment explanation
Indices: 3407--4555 Score: 1971
Period size: 616 Copynumber: 1.9 Consensus size: 618
3397 ACCCAAAAAG
* *
3407 CCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCA
1 CCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCA
3472 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCAT
66 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCAT
3537 CTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTC
131 CTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTC
* * * *
3602 TTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTC
196 TTTGCCCTATTCCTGATACTCAAAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCATTTTGTCC
3667 GGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATT
261 GGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATT
*
3732 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGGTG
326 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGTG
* ** * * *
3797 GCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCA-GCAAGTTAGTGGCAG
391 GCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCAC
* * *
3861 CTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTT
456 CTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
3926 TAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATT
521 TAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATT
3991 CCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAC
586 CCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAC
* *
4024 CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
1 CCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCA
4089 AGCTTTAGAAAATCTCAAAACCTAGTAGGG-AAACCATAAAAT-AAAAAAAAATTTGAATGTCAT
66 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCAT
*
4152 CTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTT
131 CTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTC
* *
4217 TTTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTTGTCC
196 TTTGCCCTATTCCTGATACTCAAAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCATTTTGTCC
* * * *
4282 AGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATGAAT
261 -GGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAAT
* *
4347 TGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGT
325 TGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGT
* **
4412 GGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTTTCA
390 GGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCA
* * *
4477 CCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTT
455 CCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
4542 TTAGTCCTCAAAGA
520 TTAGTCCTCAAAGA
4556 CCAGGATGCC
Statistics
Matches: 497, Mismatches: 33, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
615 144 0.29
616 179 0.36
617 174 0.35
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (618 bp):
CCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCA
AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCAT
CTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTC
TTTGCCCTATTCCTGATACTCAAAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCATTTTGTCC
GGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATT
GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGTG
GCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCAC
CTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
TAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATT
CCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAC
Found at i:4446 original size:61 final size:61
Alignment explanation
Indices: 4346--4561 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
4336 TGGGGATGAA
** * * *
4346 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
4407 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
4468 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
4529 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
4562 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:4638 original size:45 final size:44
Alignment explanation
Indices: 4566--4772 Score: 133
Period size: 45 Copynumber: 4.7 Consensus size: 44
4556 CCAGGATGCC
* * *
4566 TTTTCCTCTTCCCTCTTATCCTCAAAGAGCAGGTCGTACTTCAT
1 TTTTCCTTTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
* * * *
4610 TTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA-
1 TT-TTCCTTTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
* * * * *
4654 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCAGGACGCATTTC-G
1 TTTTCCT-TTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
* * *
4696 TTTTCCATTTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCAT
1 TTTTCCTTTTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCAT
* *
4740 TTCCTT-TTTTTCCCTTCTAGTCCTCAAAGAGCA
1 TT--TTCCTTTTCCCTT-TTGTCCTCAAAGAGCA
4773 AGACACATTT
Statistics
Matches: 123, Mismatches: 27, Indels: 24
0.71 0.16 0.14
Matches are distributed among these distances:
41 3 0.02
42 30 0.24
43 24 0.20
44 12 0.10
45 39 0.32
46 15 0.12
ACGTcount: A:0.17, C:0.27, G:0.13, T:0.43
Consensus pattern (44 bp):
TTTTCCTTTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
Found at i:4921 original size:40 final size:40
Alignment explanation
Indices: 4823--4925 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
4813 GCAGGACGTG
*
4823 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
4864 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
4906 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
4926 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:5418 original size:61 final size:61
Alignment explanation
Indices: 5313--5533 Score: 300
Period size: 61 Copynumber: 3.6 Consensus size: 61
5303 AGGTATGGGG
* ** * *
5313 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
5374 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * **
5435 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGTC-TTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
5496 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
5534 TGCCTTTTCC
Statistics
Matches: 138, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
60 5 0.04
61 133 0.96
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:5602 original size:45 final size:44
Alignment explanation
Indices: 5538--5655 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 44
5528 CCAGGATGCC
* *
5538 TTTTCCTC-TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGTACTTCA
* * *
5581 -TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTCC-TC-TTTCCCTTTTGTCCTCAAAGAGCAAGGCGTACTTCA
*
5626 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCA
5656 GGACGCATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
42 22 0.34
43 2 0.03
44 3 0.05
45 32 0.50
46 5 0.08
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGTACTTCA
Found at i:6241 original size:61 final size:61
Alignment explanation
Indices: 6141--6356 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
6131 TGGGGATGAA
** * * *
6141 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
6202 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
6263 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
6324 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
6357 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:6715 original size:40 final size:40
Alignment explanation
Indices: 6617--6719 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
6607 GCAGGACGTG
*
6617 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
6658 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
6700 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
6720 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:7213 original size:61 final size:61
Alignment explanation
Indices: 7108--7414 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
7098 AGGTATGGGG
* ** * *
7108 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
7169 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * * *
7230 GCAAGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
7291 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
7352 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
7413 AC
1 AC
7415 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 44, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
60 12 0.06
61 181 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:7383 original size:122 final size:122
Alignment explanation
Indices: 7111--7414 Score: 405
Period size: 122 Copynumber: 2.5 Consensus size: 122
7101 TATGGGGACG
* * *
7111 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
7174 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * * * *
7233 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
7298 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
7355 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
7415 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
120 2 0.01
121 6 0.04
122 145 0.95
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:7831 original size:61 final size:61
Alignment explanation
Indices: 7726--8032 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
7716 AGGTATGGGG
* ** * * *
7726 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
7787 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
7848 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
7909 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
7970 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAACCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
8031 AC
1 AC
8033 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:7951 original size:122 final size:122
Alignment explanation
Indices: 7729--8032 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
7719 TATGGGGACG
* * * * ** *
7729 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
7793 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
7851 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
7916 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
7973 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAACCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
8033 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:7962 original size:618 final size:618
Alignment explanation
Indices: 6783--8558 Score: 3113
Period size: 618 Copynumber: 2.9 Consensus size: 618
6773 TAGCACCCAA
* * * *
6783 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
6848 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAA
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAAA-TTTGAA
* * * *
6913 TG-CTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGT
129 TGTC-ATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTT-CTTCACGGACAAAATGGTGT
6977 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
192 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
7042 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
257 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
7107 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
322 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
7172 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
387 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
*
7237 AGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
452 AGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
7302 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
517 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
7367 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
582 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
7404 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
7469 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
7534 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
131 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
7599 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
196 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
7664 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
261 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
7729 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
326 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
7794 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
391 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
7859 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
456 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
7924 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
521 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
7989 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
586 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
8022 AAAACCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
8087 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
*
8152 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
131 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
* * * * * *
8217 TGTTTTTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTT
196 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
* * * * * *
8282 GTCCAGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATG
261 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
* * * *
8347 AATTGGTGGCACCTTCTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTT
326 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
* ** * * * * *
8412 GGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTT
391 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
* * * ** * *
8477 TCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
456 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
*
8542 TTTTTAGTCCTCAAAGA
521 CTTTTAGTCCTCAAAGA
8559 CCAGGATGCC
Statistics
Matches: 1110, Mismatches: 44, Indels: 5
0.96 0.04 0.00
Matches are distributed among these distances:
618 949 0.85
619 43 0.04
620 11 0.01
621 107 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (618 bp):
AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:8449 original size:61 final size:61
Alignment explanation
Indices: 8349--8564 Score: 281
Period size: 61 Copynumber: 3.5 Consensus size: 61
8339 TGGGGATGAA
* * * *
8349 TTGGTGGCACCTTCTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
8410 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
8471 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
8532 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
8565 TGCCTTTTCC
Statistics
Matches: 131, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 125 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:8641 original size:45 final size:43
Alignment explanation
Indices: 8577--8775 Score: 133
Period size: 45 Copynumber: 4.5 Consensus size: 43
8567 CCTTTTCCTC
*
8577 TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCTTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGT-GTACTTCATTT-TTTCTT
* *
8622 TTCCCTTTTGTCCTCAAAGAGTAGGGTGTACTTTATTTTCTTC-T
1 TTCCCTTTTGTCCTCAAAGAGCA-GGTGTACTTCATTTT-TTCTT
* * * * * * *
8666 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTC-GTTTTCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGG-TGTACTTCATTTTTTCTT
* *
8707 TTCTCC-TTTGTCCTTAAAGTGCAGGATGCT-CTTCATTTCCTTT-TT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TG-TACTTCATTT--TTTCTT
*
8752 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
8776 AGACACATTT
Statistics
Matches: 118, Mismatches: 23, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
40 2 0.02
41 8 0.07
42 21 0.18
43 21 0.18
44 9 0.08
45 39 0.33
46 18 0.15
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.43
Consensus pattern (43 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTGTACTTCATTTTTTCTT
Found at i:8924 original size:40 final size:40
Alignment explanation
Indices: 8826--8928 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
8816 GCAGGACGTG
*
8826 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
8867 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
8909 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
8929 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:9423 original size:61 final size:61
Alignment explanation
Indices: 9318--9624 Score: 323
Period size: 61 Copynumber: 5.0 Consensus size: 61
9308 AGGTATGGGG
* ** *
9318 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAG-TAGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
9379 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTTTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
9440 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
9501 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
9562 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
9623 AC
1 AC
9625 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
60 11 0.06
61 181 0.91
62 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:9543 original size:122 final size:122
Alignment explanation
Indices: 9321--9624 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
9311 TATGGGGACG
* * * * * **
9321 AATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * * *
9385 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTTTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
9443 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
9508 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
9565 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
9625 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:10041 original size:61 final size:61
Alignment explanation
Indices: 9941--10156 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
9931 TGGGGATGAA
** * * *
9941 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
10002 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
10063 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
10124 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
10157 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:10516 original size:40 final size:40
Alignment explanation
Indices: 10418--10520 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
10408 GCAGGACGTG
*
10418 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
10459 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
10501 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
10521 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:11014 original size:61 final size:61
Alignment explanation
Indices: 10909--11215 Score: 314
Period size: 61 Copynumber: 5.0 Consensus size: 61
10899 AGGTATGGGG
* ** * * *
10909 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
10970 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
11031 GCAAGTTAGTGGTAGCTTTTAGTCCTAAAAGAG-TCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTC-TTTCAAAGCCCAC
11092 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
11153 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
11214 AC
1 AC
11216 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
60 13 0.07
61 179 0.90
62 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:11184 original size:122 final size:122
Alignment explanation
Indices: 10912--11215 Score: 398
Period size: 122 Copynumber: 2.5 Consensus size: 122
10902 TATGGGGACG
* * *
10912 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
10975 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * * *
11034 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGTC-GGATGCCTTTTCTTTTCAAAGCCCTCACGAGT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAG-CAGGATGCCTTTTCTTTTCAAAGCCCACACGAGT
11098 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
11156 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
11216 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
120 2 0.01
121 7 0.05
122 143 0.93
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:11632 original size:61 final size:61
Alignment explanation
Indices: 11527--11833 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
11517 AGGTATGGGG
* ** * * *
11527 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
11588 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
11649 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
11710 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
11771 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAACCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
11832 AC
1 AC
11834 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:11752 original size:122 final size:122
Alignment explanation
Indices: 11530--11833 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
11520 TATGGGGACG
* * * * ** *
11530 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
11594 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
11652 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
11717 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
11774 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAACCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
11834 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:11763 original size:618 final size:618
Alignment explanation
Indices: 10584--12359 Score: 3122
Period size: 618 Copynumber: 2.9 Consensus size: 618
10574 TAGCACCCAA
* * * *
10584 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
10649 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAA
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAAA-TTTGAA
* * * *
10714 TG-CTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGT
129 TGTC-ATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTT-CTTCACGGACAAAATGGTGT
10778 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
192 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
10843 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
257 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
10908 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
322 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
10973 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
387 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
*
11038 AGTGGTAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
452 AGTGGCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
11103 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
517 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
11168 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
582 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
11205 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAAGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
11270 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
11335 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
131 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
11400 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
196 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
11465 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
261 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
11530 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
326 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
11595 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
391 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
*
11660 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
456 GCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
11725 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
521 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
11790 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
586 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
11823 AAAACCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
11888 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
*
11953 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
131 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
* * * * * *
12018 TGTTTTTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTT
196 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
* * * * *
12083 GTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATG
261 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
* * *
12148 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTT
326 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
* ** * * * * *
12213 GGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTT
391 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
* * * * * *
12278 TCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
456 GCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
*
12343 TTTTTAGTCCTCAAAGA
521 CTTTTAGTCCTCAAAGA
12360 CCAGGATGCC
Statistics
Matches: 1109, Mismatches: 45, Indels: 5
0.96 0.04 0.00
Matches are distributed among these distances:
618 949 0.86
619 43 0.04
620 11 0.01
621 106 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (618 bp):
AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
GCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:12250 original size:61 final size:61
Alignment explanation
Indices: 12150--12365 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
12140 TGGGGATGAA
** * * *
12150 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
12211 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
12272 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
12333 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
12366 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:12442 original size:45 final size:44
Alignment explanation
Indices: 12370--12489 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 44
12360 CCAGGATGCC
* *
12370 TTTTCCTC-TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * *
12413 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
*
12458 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCAGG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGG
12490 ATGCATTTCG
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
42 23 0.35
43 2 0.03
44 3 0.05
45 33 0.51
46 4 0.06
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
Found at i:12725 original size:40 final size:40
Alignment explanation
Indices: 12627--12729 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
12617 GCAGGACGTG
*
12627 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
12668 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
12710 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
12730 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:13284 original size:60 final size:62
Alignment explanation
Indices: 13123--13435 Score: 341
Period size: 61 Copynumber: 5.1 Consensus size: 62
13113 TGGGGACGAA
** * * * *
13123 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAGGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTTCAAAGCCCACACAAG
* * * **
13184 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTT-AACGCGCAGGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTTCAAAGCCCACACAAG
* * * * * * *
13245 TT-GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTTCAAAGCCCACACAAG
* *
13305 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCACGCAAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTTCAAAGCCCACACAAG
* * ** * *
13366 TTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCACACAAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTTCAAAGCCCACACAAG
*
13427 TTGGGGGCA
1 TTGGTGGCA
13436 AAGCTTTCCA
Statistics
Matches: 209, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
59 10 0.05
60 43 0.21
61 147 0.70
62 9 0.04
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (62 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTTCAAAGCCCACACAAG
Found at i:13340 original size:121 final size:122
Alignment explanation
Indices: 13121--13423 Score: 403
Period size: 121 Copynumber: 2.5 Consensus size: 122
13111 TATGGGGACG
* * * ** *
13121 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
13185 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
13243 AGTT-GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
13307 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* *
13364 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
13424 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
121 103 0.67
122 51 0.33
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:13840 original size:61 final size:61
Alignment explanation
Indices: 13740--13955 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
13730 TGGGGATGAA
** * * *
13740 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
13801 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
13862 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
13923 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
13956 TGACTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:14058 original size:45 final size:44
Alignment explanation
Indices: 13960--14185 Score: 133
Period size: 42 Copynumber: 5.2 Consensus size: 44
13950 CCAGGATGAC
* * * * *
13960 TTTTCCTC-TTCCCTCTTGTCTTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
14003 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
14048 TTTTCCTCTTT--CTTTTATCCTCAAAGAGTAGGACGCATTTCG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * * *
14090 TTTTCC-ATTTCTCC-TTTATCCTTAAAGTGCAGGATGCTCTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
14133 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCA
1 TTTTCC--TCTTTCCCTT-TTGTCCTCAAAGAGTAGGACGCACTTCA
14179 TTTTCCT
1 TTTTCCT
14186 TTTTTTCTTT
Statistics
Matches: 139, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
41 3 0.02
42 41 0.29
43 24 0.17
44 6 0.04
45 37 0.27
46 23 0.17
47 5 0.04
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.43
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
Found at i:14315 original size:40 final size:40
Alignment explanation
Indices: 14217--14319 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
14207 GCAGGACGTG
*
14217 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
14258 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
14300 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
14320 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:14813 original size:61 final size:61
Alignment explanation
Indices: 14708--15014 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
14698 AGGTATGGGG
* ** * *
14708 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
14769 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * * *
14830 GCAAGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
14891 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
14952 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
15013 AC
1 AC
15015 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:14983 original size:122 final size:122
Alignment explanation
Indices: 14711--15014 Score: 396
Period size: 122 Copynumber: 2.5 Consensus size: 122
14701 TATGGGGACG
* * * *
14711 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
14774 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * * * *
14833 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
14898 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
14955 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
15015 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
120 2 0.01
121 6 0.04
122 145 0.95
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:15432 original size:61 final size:61
Alignment explanation
Indices: 15327--15633 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
15317 AGGTATGGGG
* ** * *
15327 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
15388 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
15449 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
15510 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
15571 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
15632 AC
1 AC
15634 AAATTGGGGG
Statistics
Matches: 201, Mismatches: 42, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 183 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:15552 original size:122 final size:122
Alignment explanation
Indices: 15330--15633 Score: 394
Period size: 122 Copynumber: 2.5 Consensus size: 122
15320 TATGGGGACG
* * * * ** *
15330 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
15394 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
15452 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
15517 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
15574 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
15634 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 153 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:15564 original size:619 final size:619
Alignment explanation
Indices: 14383--16159 Score: 3128
Period size: 619 Copynumber: 2.9 Consensus size: 619
14373 TAGCACCCAA
* * * *
14383 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
14448 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAA
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAAATTTTGAA
* * * * *
14513 TG-CTGTCCTTTAACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGT
130 TGTC-ATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACGGACAAAATGGTGT
14577 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
193 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
14642 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
258 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
*
14707 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTTCTTTCAAGGCCCACACG
323 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
14772 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
388 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
*
14837 AGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
453 AGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
14902 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
518 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
14967 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
583 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
15004 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
15069 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAAATTTGAAT
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTTGAAT
15134 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
131 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
15199 TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
196 TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
15264 TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
261 TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
15329 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
326 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
15394 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
391 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
15459 GGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
456 GGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
15524 CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
521 CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
15589 TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
586 TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
15623 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
15688 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAATTTTGAAT
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTTGAAT
15752 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
131 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
* * * * * * *
15817 TTGTTTTTGCCCTATTCCTGAAACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTT
196 TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
* * * * *
15882 TGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGAT
261 TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
* * *
15947 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGT
326 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
* ** * *
16012 TGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGC-CGACGCAAGTTAG
391 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGC-AGGCAAGTTAG
** * * * * *
16076 TTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
455 TGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGC
*
16141 ACTTTTTAGTCCTCAAAGA
520 ACCTTTTAGTCCTCAAAGA
16160 CCAGGATGCC
Statistics
Matches: 1112, Mismatches: 42, Indels: 7
0.96 0.04 0.01
Matches are distributed among these distances:
617 1 0.00
618 394 0.35
619 566 0.51
620 43 0.04
621 108 0.10
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (619 bp):
AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTTGAAT
GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
GGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:16050 original size:61 final size:61
Alignment explanation
Indices: 15950--16165 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
15940 TGGGGATGAA
** * * *
15950 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
16011 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
16072 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
16133 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
16166 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:16268 original size:45 final size:44
Alignment explanation
Indices: 16170--16395 Score: 142
Period size: 42 Copynumber: 5.2 Consensus size: 44
16160 CCAGGATGCC
* * * * *
16170 TTTTCCTC-TTCCCTCTTGTCTTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
16213 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
16258 TTTTCCTCTTT--CTTTTATCCTCAAAGAGTAGGACGCATTTCG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
16300 TTTTCC-ATTTCTCC-TTTGTCCTTAAAGTGCAGGATGCTCTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
16343 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCA
1 TTTTCC--TCTTTCCCTT-TTGTCCTCAAAGAGTAGGACGCACTTCA
16389 TTTTCCT
1 TTTTCCT
16396 TTTTTTCTTT
Statistics
Matches: 139, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
41 3 0.02
42 41 0.29
43 23 0.17
44 6 0.04
45 37 0.27
46 24 0.17
47 5 0.04
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.43
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
Found at i:16525 original size:40 final size:40
Alignment explanation
Indices: 16427--16529 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
16417 GCAGGACGTG
*
16427 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
16468 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
16510 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
16530 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:17024 original size:61 final size:61
Alignment explanation
Indices: 16919--17225 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
16909 AGGTATGGGG
* ** * * *
16919 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
16980 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
17041 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
17102 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
17163 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
17224 AC
1 AC
17226 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:17144 original size:122 final size:122
Alignment explanation
Indices: 16922--17225 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
16912 TATGGGGACG
* * * * ** *
16922 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
16986 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
17044 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
17109 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
17166 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAACCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
17226 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:17642 original size:61 final size:61
Alignment explanation
Indices: 17542--17757 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
17532 TGGGGATGAA
** * * *
17542 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
17603 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
17664 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
17725 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
17758 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:17834 original size:45 final size:44
Alignment explanation
Indices: 17762--17968 Score: 142
Period size: 45 Copynumber: 4.7 Consensus size: 44
17752 CCAGGATGCC
* *
17762 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCAT
1 TTTTCCTTTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
* * * *
17806 TTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA-
1 TT-TTCCTTTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
* * * * *
17850 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCAGGACGCATTTC-G
1 TTTTCCT-TTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
* * *
17892 TTTTCCATTTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCAT
1 TTTTCCTTTTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCAT
* *
17936 TTCCTT-TTTTTCCCTTCTAGTCCTCAAAGAGCA
1 TT--TTCCTTTTCCCTT-TTGTCCTCAAAGAGCA
17969 AGACACATTT
Statistics
Matches: 124, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
41 3 0.02
42 30 0.24
43 24 0.19
44 12 0.10
45 40 0.32
46 15 0.12
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.43
Consensus pattern (44 bp):
TTTTCCTTTTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCAT
Found at i:18062 original size:35 final size:34
Alignment explanation
Indices: 17982--18062 Score: 81
Period size: 35 Copynumber: 2.3 Consensus size: 34
17972 CACATTTCAT
* ** *
17982 TTTCCTTTTTCTCTTTGTTTTCAAAAAGCAGGACG
1 TTTCC-TTTTCACTTTGTCCTCAAAAAGCAGGACC
* *
18017 TGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACAC
1 T-TTCCTTTTCACTTTGTCCTCAAAAAGCAGGAC-C
18053 TTTCCTTTTC
1 TTTCCTTTTC
18063 TTTTTTCCTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
35 33 0.89
36 4 0.11
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.44
Consensus pattern (34 bp):
TTTCCTTTTCACTTTGTCCTCAAAAAGCAGGACC
Found at i:18117 original size:40 final size:40
Alignment explanation
Indices: 18019--18121 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
18009 GCAGGACGTG
*
18019 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
18060 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
18102 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
18122 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:18615 original size:61 final size:61
Alignment explanation
Indices: 18510--18816 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
18500 AGGTATGGGG
* ** * * *
18510 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
18571 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
18632 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
18693 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
18754 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
18815 AC
1 AC
18817 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:18735 original size:122 final size:122
Alignment explanation
Indices: 18513--18816 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
18503 TATGGGGACG
* * * * ** *
18513 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
18577 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
18635 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
18700 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
18757 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAACCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
18817 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:19233 original size:61 final size:61
Alignment explanation
Indices: 19133--19348 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
19123 TGGGGATGAA
** * * *
19133 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
19194 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
19255 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
19316 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
19349 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:19451 original size:45 final size:44
Alignment explanation
Indices: 19353--19578 Score: 142
Period size: 42 Copynumber: 5.2 Consensus size: 44
19343 CCAGGATGCC
* * * * *
19353 TTTTCCTC-TTCCCTCTTGTCTTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
19396 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
19441 TTTTCCTCTTT--CTTTTATCCTCAAAGAGTAGGACGCATTTCG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
19483 TTTTCC-ATTTCTCC-TTTGTCCTTAAAGTGCAGGATGCTCTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
19526 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCA
1 TTTTCC--TCTTTCCCTT-TTGTCCTCAAAGAGTAGGACGCACTTCA
19572 TTTTCCT
1 TTTTCCT
19579 TTTTTTCTTT
Statistics
Matches: 139, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
41 3 0.02
42 41 0.29
43 23 0.17
44 6 0.04
45 37 0.27
46 24 0.17
47 5 0.04
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.43
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
Found at i:19708 original size:40 final size:40
Alignment explanation
Indices: 19610--19712 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
19600 GCAGGACGTG
*
19610 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
19651 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
19693 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
19713 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:20206 original size:61 final size:61
Alignment explanation
Indices: 20101--20407 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
20091 AGGTATGGGG
* ** * *
20101 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
20162 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * * *
20223 GCAAGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
*
20284 ACGAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
20345 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
20406 AC
1 AC
20408 AAATTAGGGG
Statistics
Matches: 198, Mismatches: 45, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
60 12 0.06
61 180 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:20376 original size:122 final size:122
Alignment explanation
Indices: 20104--20407 Score: 387
Period size: 122 Copynumber: 2.5 Consensus size: 122
20094 TATGGGGACG
* * * *
20104 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * * *
20167 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
64 TTGGTGGCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * * * *
20226 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
20291 GGTGGCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
20348 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
20408 AAATTAGGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
120 2 0.01
121 6 0.04
122 144 0.95
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:20824 original size:61 final size:61
Alignment explanation
Indices: 20719--21025 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
20709 AGGTATGGGG
* ** * * *
20719 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
20780 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
20841 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
20902 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
20963 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
21024 AC
1 AC
21026 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:20944 original size:122 final size:122
Alignment explanation
Indices: 20722--21025 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
20712 TATGGGGACG
* * * * ** *
20722 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
20786 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
20844 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
20909 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
20966 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAACCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
21026 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:20955 original size:618 final size:617
Alignment explanation
Indices: 19776--21551 Score: 3077
Period size: 618 Copynumber: 2.9 Consensus size: 617
19766 TAGCACCCAA
* * *
19776 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGG-GGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
19841 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
65 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT--AAAAAAAAAATTTGAA
* * * *
19906 TG-CTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGT
128 TGTC-ATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACGGACAAAATGGTGT
19970 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
191 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
*
20035 TTTTGTTCGGGCTAATTTTTTGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
256 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
*
20100 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTTCTTTCAAGGCCCACACG
321 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
20165 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
386 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
*
20230 AGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
451 AGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
*
20295 GCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
516 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
20360 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
581 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
20397 AAAGCCCACACAAATTAGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATT-GGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
20462 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
65 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
20527 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
130 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
20592 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
195 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
*
20657 GTTCGGGCTAATTTTTCGATAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
260 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
20722 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
325 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
20787 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
390 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
20852 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
455 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
20917 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
520 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
20982 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
585 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
21015 AAACCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATT-GGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
21080 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
65 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
21145 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
130 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
* * * * * *
21210 TGTTTTTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTT
195 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
* * * * *
21275 GTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATG
260 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
* * * *
21340 AATTGGTGGCACCTTCTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTT
325 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
* ** * * * * *
21405 GGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTT
390 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
* * * ** * *
21470 TCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
455 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
*
21535 TTTTTAGTCCTCAAAGA
520 CTTTTAGTCCTCAAAGA
21552 CCAGGATGCC
Statistics
Matches: 1106, Mismatches: 47, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
618 954 0.86
619 44 0.04
620 1 0.00
621 105 0.09
622 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (617 bp):
AAAGCCCACACAAATTGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGG
TCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGT
CATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTT
GTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTG
TTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGA
ATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTG
GTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGG
CAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACC
TTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTC
ATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:21442 original size:61 final size:61
Alignment explanation
Indices: 21342--21557 Score: 281
Period size: 61 Copynumber: 3.5 Consensus size: 61
21332 TGGGGATGAA
* * * *
21342 TTGGTGGCACCTTCTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
21403 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
21464 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
21525 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
21558 TGCCTTTTCC
Statistics
Matches: 131, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 125 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:21634 original size:45 final size:44
Alignment explanation
Indices: 21562--21768 Score: 144
Period size: 42 Copynumber: 4.7 Consensus size: 44
21552 CCAGGATGCC
* *
21562 TTTTCCTC-TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * *
21605 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * * * *
21650 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCAGGACGCATTTCG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * *
21692 TTTTCC-ATTTCTCC-TTTGTCCTTAAAGTGCAGGATGC-T-CTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGCAGG--GCGTACTTCA
* *
21735 -TTTCCTTTTTTACCCTTCTAGTCCTCAAAGAGCA
1 TTTTCC-TCTTT-CCCTT-TTGTCCTCAAAGAGCA
21769 AGACACATTT
Statistics
Matches: 125, Mismatches: 25, Indels: 25
0.71 0.14 0.14
Matches are distributed among these distances:
41 3 0.02
42 39 0.31
43 21 0.17
44 9 0.07
45 36 0.29
46 17 0.14
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
Found at i:21905 original size:42 final size:40
Alignment explanation
Indices: 21819--21921 Score: 115
Period size: 41 Copynumber: 2.5 Consensus size: 40
21809 GCAGGACGTG
21819 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCCTT
*
21860 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCAC-T
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTC-CTT
21902 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
21922 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 14 0.25
43 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.45
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCCTT
Found at i:22414 original size:61 final size:61
Alignment explanation
Indices: 22309--22660 Score: 402
Period size: 61 Copynumber: 5.8 Consensus size: 61
22299 AGGTATGGGG
* ** * *
22309 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
22370 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * *
22431 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGTCAGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAG-CAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
22493 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
22554 GCAAGTTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
22615 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
22661 CGTCTTCCCC
Statistics
Matches: 237, Mismatches: 49, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
60 6 0.03
61 180 0.76
62 51 0.22
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:22535 original size:123 final size:122
Alignment explanation
Indices: 22317--22660 Score: 458
Period size: 123 Copynumber: 2.8 Consensus size: 122
22307 GGACGAATTG
* * * ** *
22317 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGTTGGTG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGTTGGTG
* * * *
22381 GCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTA-ACGCGCAGGCAAGTTA
65 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATA-GCCCACGCAAGTTA
* * * * *
22439 GTGGCAGCTTTTAGTCCTAAAAGAGTCAGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
1 GTGGCACCTTTCAGTCCTAAAAGAG-CAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTG
*
22504 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCACGCAAGTTG
65 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCACGCAAGTTA
* *
22562 GTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
22627 CACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
66 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT
22661 CGTCTTCCCC
Statistics
Matches: 195, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
122 89 0.46
123 104 0.53
124 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (122 bp):
GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCACGCAAGTTA
Found at i:22637 original size:184 final size:183
Alignment explanation
Indices: 22309--22661 Score: 460
Period size: 184 Copynumber: 1.9 Consensus size: 183
22299 AGGTATGGGG
*
22309 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGA
1 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACAA
* * ** * * * **
22374 GTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTA
66 GTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTTAAAGCCCACACAAGTTA
*
22439 GTGGCAGCTTTTAGTCCTAAAAGAGTCAGGATGCCTTTTCTTTTCAAAGCCCTC
131 GTGGCAGCTTTTAGTCCTAAAAGAG-CAGGACGCCTTTTCTTTTCAAAGCCCTC
* ** * * *
22493 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATA-GCCCACGCA
1 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCA-AGGCCCACACA
* *
22557 AGTTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCACACGAGT
65 AGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTT-AAAGCCCACACAAGT
* *
22621 TGGTGGCA-CTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
129 TAGTGGCAGC-TTTTAGTCCTAAAAGAGCAGGACGCCTTTTC
22662 GTCTTCCCCC
Statistics
Matches: 145, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
183 24 0.17
184 120 0.83
185 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (183 bp):
ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACAA
GTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTTAAAGCCCACACAAGTTA
GTGGCAGCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCTC
Found at i:22818 original size:43 final size:42
Alignment explanation
Indices: 22672--22831 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 42
22662 GTCTTCCCCC
* * *
22672 TTGTCCTCAAAGAGTAGGATGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAAAGTAGGACGCACTTTATTTTCC-TC-TTT--CTT
* *
22717 TTGCCCT-AAAGAA-CAGGACGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAA-AAGTAGGACGCACTTTATTTTCCTCTTTCTT
* *
22758 TTGTCCTCAAAAAGTAGGACGCATTTTGTTTTCCT-TTTCTCCT
1 TTGTCCTCAAAAAGTAGGACGCACTTTATTTTCCTCTTTCT--T
* * * *
22801 TTGTCCTCGAAGAGTAGGACGCTCTTCATTT
1 TTGTCCTCAAAAAGTAGGACGCACTTTATTT
22832 CTTTCTTTTC
Statistics
Matches: 94, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
41 16 0.17
42 21 0.22
43 29 0.31
44 16 0.17
45 12 0.13
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (42 bp):
TTGTCCTCAAAAAGTAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:22860 original size:46 final size:46
Alignment explanation
Indices: 22674--22912 Score: 158
Period size: 46 Copynumber: 5.4 Consensus size: 46
22664 CTTCCCCCTT
* * * * *
22674 GTCCTCAAAGAGTAGGATGCACTTCATTTCCTTCTTTTCCCT-TTT
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
* * * * * *
22719 GCCCT-AAAGAACAGGACGCACTTTATTTTCC-TC-TTT--CT-TTT
1 GTCCTCAAAGAGCAGGACGCTCTTCA-TTTCCTTCTTTTCCCTCATG
* * * ** * *
22760 GTCCTCAAAAAGTAGGACGCATTTTGTTTTCCTT-TTCT-CCT--TT
1 GTCCTCAAAGAGCAGGACGC-TCTTCATTTCCTTCTTTTCCCTCATG
* * *
22803 GTCCTCGAAGAGTAGGACGCTCTTCATTTCTTTCTTTTCCCTCATG
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
** *
22849 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTTGTA
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
*
22895 GTCCTTAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
22913 ACATTTTATT
Statistics
Matches: 155, Mismatches: 29, Indels: 19
0.76 0.14 0.09
Matches are distributed among these distances:
41 9 0.06
42 25 0.16
43 31 0.20
44 23 0.15
45 9 0.06
46 58 0.37
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (46 bp):
GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
Found at i:23055 original size:40 final size:40
Alignment explanation
Indices: 22958--23059 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 40
22948 CAGGACGTAC
22958 TCTTTTTCACTTTGTCCTCAAGAAGCAAGACACTTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAAGACACTTTCCTTT
* *
22999 TCTTTTTTCCTTTGTCCTCAAGGAGCGAGAC-CTATTTCAC-TT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCAAGACAC--TTTC-CTTT
23041 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
23060 AAAGTGGGAC
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
40 18 0.33
41 22 0.40
42 14 0.25
43 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.11, T:0.44
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCCTTT
Found at i:23552 original size:61 final size:61
Alignment explanation
Indices: 23452--23797 Score: 430
Period size: 61 Copynumber: 5.7 Consensus size: 61
23442 TGGGGATGAA
* *
23452 TTGGTGGCACCTTGTAGTCCTCAAAGAGC-GAGACATCTTTTTCTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAG-GACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
23513 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * * *
23574 TTGGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* * * *
23635 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
23696 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CCTTTTCTGTTCGAAA-CACACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCT-TTC-AAAGCCCACACGAG
* *
23757 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
23798 CCTCTTCCCC
Statistics
Matches: 242, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
60 13 0.05
61 215 0.89
62 14 0.06
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:23669 original size:122 final size:122
Alignment explanation
Indices: 23450--23797 Score: 477
Period size: 122 Copynumber: 2.9 Consensus size: 122
23440 TATGGGGATG
* * **
23450 AATTGGTGGCACCTTGT-AGTCCTCAAAGAGCGAGACATCTTTT-TCTTTCAAAGCCCACACGAG
1 AATTGGTGGCACCTT-TCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* *
23513 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
23572 AGTTGGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
*
23637 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
23694 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTGTTCGAAA-CACACACGAGT
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTC-AAAGCCCACACGAGT
* *
23758 TGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
23798 CCTCTTCCCC
Statistics
Matches: 198, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
121 1 0.01
122 193 0.97
123 4 0.02
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:23761 original size:183 final size:183
Alignment explanation
Indices: 23452--23798 Score: 486
Period size: 183 Copynumber: 1.9 Consensus size: 183
23442 TGGGGATGAA
* *
23452 TTGGTGGCACCTTGTAGTCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTGTAGTCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACACAAATTGG
* * * * * * *
23517 TGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
66 TGGCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTGAAAGCACACACAAGTTGGTGGC
* *
23582 AGC-TTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAG
131 A-CTTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCTCACGAG
* * *
23635 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTG-GACGTCTTTTTCTTTCAAAGCCCACGCAAATTG
1 TTGGTGGCACCTTGTAGTCCTCAAAGAGC-GAGACATCTTTTTCTTTCAAAGCCCACACAAATTG
*
23699 GTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CCTTTTCTGTTCGAAA-CACACACGAGTTGGT
65 GTGGCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCT-TT-GAAAGCACACACAAGTTGGT
*
23762 GGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
128 GGCACTTTTTAGTCCTAAAAGAGCAGGACGCCTTTTC
23799 CTCTTCCCCC
Statistics
Matches: 144, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
182 8 0.06
183 132 0.92
184 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (183 bp):
TTGGTGGCACCTTGTAGTCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACACAAATTGG
TGGCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTGAAAGCACACACAAGTTGGTGGC
ACTTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCTCACGAG
Found at i:23842 original size:42 final size:43
Alignment explanation
Indices: 23773--24000 Score: 170
Period size: 42 Copynumber: 5.3 Consensus size: 43
23763 GCACTTTTTA
*
23773 GTCCTCAAAGAGCAGGACGC-C-T--TTTCCTCTTCCCCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTCTTTCCCCTTT
* **
23812 -TCCTCAAAGAGCAGGACGCACTTCATTTCCTTATTTTCCATTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCC-T-CTTTCCCCTTT
* * * **
23856 GTCCACAAAGAGTAGGACGCACTTTATTTTCCTCTTT--GTTTT
1 GTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTCTTTCCCCTTT
* * * *
23898 GTCCT-TAAGCAGCAGAACGCATTTCATTTTCCT-TTTCTCCTTT
1 GTCCTCAAAG-AGCAGGACGCACTTCA-TTTCCTCTTTCCCCTTT
*
23941 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCATTT-CCCTTCT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCC-TC-TTTCCCCTT-T
*
23986 AGTCTTCAAAGAGCA
1 -GTCCTCAAAGAGCA
24001 TGACATATTT
Statistics
Matches: 149, Mismatches: 23, Indels: 27
0.75 0.12 0.14
Matches are distributed among these distances:
38 19 0.13
39 1 0.01
40 1 0.01
41 6 0.04
42 37 0.25
43 23 0.15
44 17 0.11
45 27 0.18
46 18 0.12
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCACTTCATTTCCTCTTTCCCCTTT
Found at i:23955 original size:43 final size:43
Alignment explanation
Indices: 23807--24048 Score: 187
Period size: 42 Copynumber: 5.6 Consensus size: 43
23797 TCCTCTTCCC
*
23807 CCTTT-TCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTATTTT
1 CCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTT-TTTT
* * *
23849 CCATTTTGTCCACAAAGAGTAGGACGCACTTT-ATTTTCCTCTTTGT
1 CC--TTTGTCCTCAAAGAGCAGGACGCA-TTTCATTTTCCT-TTTTT
* * *
23895 --TTTGTCCT-TAAGCAGCAGAACGCATTTCATTTTCCTTTTCT
1 CCTTTGTCCTCAAAG-AGCAGGACGCATTTCATTTTCCTTTTTT
*
23936 CCTTTGTCCTCAAAGAGCAGGACGC-TCTTCA-TTTCCTTCATTTC
1 CCTTTGTCCTCAAAGAGCAGGACGCAT-TTCATTTTCCTT--TTTT
* * ** *
23980 CCTTCTAGTCTTCAAAGAGCATGACATATTTCGTTTTCCTTTTTT
1 CCTT-T-GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTT
*
24025 CCTTTGTCCTCGAAA-AGTAGGACG
1 CCTTTGTCCTC-AAAGAGCAGGACG
24049 TACTCTTTTT
Statistics
Matches: 158, Mismatches: 23, Indels: 37
0.72 0.11 0.17
Matches are distributed among these distances:
41 10 0.06
42 34 0.22
43 32 0.20
44 16 0.10
45 27 0.17
46 30 0.19
47 9 0.06
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (43 bp):
CCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTT
Found at i:24883 original size:61 final size:60
Alignment explanation
Indices: 24538--24888 Score: 375
Period size: 61 Copynumber: 5.8 Consensus size: 60
24528 AGGTATAGGG
* * * ** *
24538 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATCTTTTTCCTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-TTTCAAAGCCCAC
* * * * *
24599 ACGAGTTGGTAGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-TTTCAAAGCCCAC
* * * * * * *
24660 GCAAGTTGGTGGCAGCTTTTAGTCCTAAAAAAGTC-GGACACCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAG-CAGGACGCCTTTT-TTTTCAAAGCCCAC
* *
24721 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGC-AGGACGCCT-TTTTTTTCAAAGCCCAC
* * * * *
24782 GA-AAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTATTTTCGAAGCACAC
1 -ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT-TTTTCAAAGCCCAC
*
24843 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
24889 CCTCTACCCC
Statistics
Matches: 240, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
60 6 0.03
61 228 0.95
62 6 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCAAAGCCCAC
Found at i:24889 original size:183 final size:183
Alignment explanation
Indices: 24538--24868 Score: 436
Period size: 183 Copynumber: 1.8 Consensus size: 183
24528 AGGTATAGGG
* *
24538 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGA
1 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATCTATTTCCTTCAAAGCCCACACAA
* * * * * *
24603 GTTGGTAGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCACGCAAGTTG
66 GTTGGTAGCACCTTTCAGTCCTCAAAGAACAAGACGACTTTTTCTTTCAAAGCACACACAAGTTG
24668 GTGGCAGCTTTTAGTCCTAAAAAAGTCGGACACCTTTTCTTTTCAAAGCCCTC
131 GTGGCAGCTTTTAGTCCTAAAAAAGTCGGACACCTTTTCTTTTCAAAGCCCTC
* * * * *
24721 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGA-
1 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGC-AGGACATCTATTTCCTTCAAAGCCCAC-AC
* * * * *
24784 AAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTAT-TTTCGAAGCACACACGAG
64 AAGTTGGTAGCACCTTTCAGTCCTCAAAGAACAAGACGACTTTT-TCTTTCAAAGCACACACAAG
24848 TTGGTGGCA-CTTTTTAGTCCT
128 TTGGTGGCAGC-TTTTAGTCCT
24869 CAAAGAGCAG
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
182 1 0.01
183 122 0.97
184 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (183 bp):
ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATCTATTTCCTTCAAAGCCCACACAA
GTTGGTAGCACCTTTCAGTCCTCAAAGAACAAGACGACTTTTTCTTTCAAAGCACACACAAGTTG
GTGGCAGCTTTTAGTCCTAAAAAAGTCGGACACCTTTTCTTTTCAAAGCCCTC
Found at i:25116 original size:46 final size:43
Alignment explanation
Indices: 24900--25245 Score: 212
Period size: 42 Copynumber: 8.3 Consensus size: 43
24890 CTCTACCCCC
* * * *
24900 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTCCCTTT
1 TTGTCCTCAAAGAGCAGGACGTATTTCTTTTCCTTTTTTCCC--T
* * * * *
24945 TTGTCCTCAAAGAGTAGGACGCACTTTATTTTCC-TCTTT-CTT
1 TTGTCCTCAAAGAGCAGGACGTA-TTTCTTTTCCTTTTTTCCCT
* * *
24987 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCT-CCT
1 TTGTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTTTTTCCCT
*
25030 TTGTCCTCAAAGAGCAGGACGT-TCTTCATTTCCTTGTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGTAT-TTCTTTTCCTT-TTTTCCCT
* * *
25074 TCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTT-CTT
1 T-T-GTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTTTTTCCCT
* *
25119 TTGTCCTCGAAA-AGTAGGACGTA---C---T--TTTTTTCTCT
1 TTGTCCTC-AAAGAGCAGGACGTATTTCTTTTCCTTTTTTCCCT
* **
25154 TTGTCCTC-AAGAAGCAGGACG-CTTTCCATTCCTTTTTT-CCT
1 TTGTCCTCAAAG-AGCAGGACGTATTTCTTTTCCTTTTTTCCCT
* * * *
25195 TTGTCCTCAAGGAGC-GAGACCTATTTC-ATT-CTCTTTT-CCT
1 TTGTCCTCAAAGAGCAG-GACGTATTTCTTTTCCTTTTTTCCCT
25235 TTGTCCTCAAA
1 TTGTCCTCAAA
25246 AAGTGGGACA
Statistics
Matches: 245, Mismatches: 31, Indels: 55
0.74 0.09 0.17
Matches are distributed among these distances:
33 2 0.01
34 6 0.02
35 17 0.07
36 1 0.00
37 1 0.00
40 22 0.09
41 22 0.09
42 48 0.20
43 46 0.19
44 9 0.04
45 31 0.13
46 32 0.13
47 8 0.03
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACGTATTTCTTTTCCTTTTTTCCCT
Found at i:25243 original size:40 final size:41
Alignment explanation
Indices: 25146--25244 Score: 123
Period size: 41 Copynumber: 2.4 Consensus size: 41
25136 GACGTACTTT
*
25146 TTTTCTCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCCTT
1 TTTTC-CTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCCTC
* *
25188 TTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT-CTC
1 TTTTCCTTTGTCCTCAAGAAGCAG-GACGCT-TTCCATTCCTC
25228 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
25245 AAAGTGGGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
40 22 0.42
41 25 0.48
42 5 0.10
ACGTcount: A:0.16, C:0.28, G:0.13, T:0.42
Consensus pattern (41 bp):
TTTTCCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCCTC
Found at i:25719 original size:61 final size:60
Alignment explanation
Indices: 25636--25974 Score: 317
Period size: 61 Copynumber: 5.6 Consensus size: 60
25626 TAGGGACAAA
* * *
25636 TTGGTGGCACCTTCTAAG-CCTCAAAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGAG
1 TTGGTGGCAACTT-TTAGTCCTCAAAGAGCAGGACA-CTTTTTCTTTCAAAGCCCACACGAG
* * * * * * *
25697 TTGGTAGCAACTTTTAGTCCTCAAAGAACATGATGACTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGA-CACTTTTTCTTTCAAAGCCCACACGAG
* * * *
25758 TTGGTGGCAGCTTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAG-CAGGACACTTTTTCT-TTCAAAGCCCACACGAG
* * * * * *
25819 TTGGTGGCACCTTTTTGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGCAAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAGC-AGGAC-ACTTTTTCTTTCAAAGCCCACACGAG
* * * * * * * *
25880 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCTTTTTATTTTCGAAGCACACATGAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGACACTTTTT-CTTTCAAAGCCCACACGAG
25941 TTGGTGGC-ACTTTTTAGTCCTCAAAGAGCAGGAC
1 TTGGTGGCAAC-TTTTAGTCCTCAAAGAGCAGGAC
25975 GCCTTTTCCT
Statistics
Matches: 225, Mismatches: 43, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
60 19 0.08
61 198 0.88
62 8 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (60 bp):
TTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGACACTTTTTCTTTCAAAGCCCACACGAG
Found at i:25862 original size:122 final size:121
Alignment explanation
Indices: 25636--25975 Score: 364
Period size: 122 Copynumber: 2.8 Consensus size: 121
25626 TAGGGACAAA
* * * * *
25636 TTGGTGGCACCTTCTAAG-CCTCAAAGAGCAGGACATCTTTT-TCCTTCAAAGCCCACACGAGTT
1 TTGGTGGCACCTT-TCAGTCCTAAAAGAGCAAGACACCTTTTAT-ATTCAAAGCCCACACGAGTT
* * * * * *
25699 GGTAGCAACTTTTAGTCCTCAAAGAACATGATGACTTTTTCTTTTAAAGCCCACGCAAG
64 GGTGGC-ACTTTTTGTCCTCAAAGAGCATGACGACTATTTCTTTCAAAGCCCACGCAAG
* * * * *
25758 TTGGTGGCAGCTTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAG-CAAGACACCTTTTATATTCAAAGCCCACACGAGTTG
*
25822 GTGGCACCTTTTTGTCCTCAAAGAGC-TAGACGTCTATTTCTTTCAAAGCCCACGCAAG
65 GTGGCA-CTTTTTGTCCTCAAAGAGCAT-GACGACTATTTCTTTCAAAGCCCACGCAAG
* * * * * * *
25880 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCTTTTTATTTTCGAAGCACACATGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACACCTTTTATATTCAAAGCCCACACGAGTTGG
*
25945 TGGCACTTTTTAGTCCTCAAAGAGCAGGACG
66 TGGCACTTTTT-GTCCTCAAAGAGCATGACG
25976 CCTTTTCCTC
Statistics
Matches: 184, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
121 12 0.07
122 170 0.92
123 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (121 bp):
TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACACCTTTTATATTCAAAGCCCACACGAGTTGG
TGGCACTTTTTGTCCTCAAAGAGCATGACGACTATTTCTTTCAAAGCCCACGCAAG
Found at i:25945 original size:183 final size:183
Alignment explanation
Indices: 25636--25982 Score: 425
Period size: 183 Copynumber: 1.9 Consensus size: 183
25626 TAGGGACAAA
* *
25636 TTGGTGGCACCTTCTAAGCCTCAAAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTCTAAGCCTCAAAGAGCAGGACATCTATTTCCTTCAAAGCCCACACAAGTTGG
* * * * * *
25701 TAGCAACTTTTAGTCCTCAAAGAACATGATGACTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
66 TAGCAACTTTCAGTCCTCAAAGAACAAGACGACTTTTTATTTTAAAGCACACACAAGTTGGTGGC
25766 AGC-TTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAG
131 A-CTTTTTAGTCCTAAAAGAG-CAGGACACCTTTTCTATTCAAAGCCCTCACGAG
** * * *
25819 TTGGTGGCACCTT-TTTGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGCAAGTT
1 TTGGTGGCACCTTCTAAG-CCTCAAAGAGC-AGGACATCTATTTCCTTCAAAGCCCACACAAGTT
* * * * **
25882 GGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CTTTTTATTTTCGAAGCACACATGAGTTGGT
64 GGTAGCAACTTTCAGTCCTCAAAGAACAAGACGACTTTTTATTTT-AAAGCACACACAAGTTGGT
* *
25946 GGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
128 GGCACTTTTTAGTCCTAAAAGAGCAGGACACCTTTTC
25983 CTCTACCCCC
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
182 14 0.10
183 123 0.89
184 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (183 bp):
TTGGTGGCACCTTCTAAGCCTCAAAGAGCAGGACATCTATTTCCTTCAAAGCCCACACAAGTTGG
TAGCAACTTTCAGTCCTCAAAGAACAAGACGACTTTTTATTTTAAAGCACACACAAGTTGGTGGC
ACTTTTTAGTCCTAAAAGAGCAGGACACCTTTTCTATTCAAAGCCCTCACGAG
Found at i:26050 original size:42 final size:43
Alignment explanation
Indices: 25993--26174 Score: 188
Period size: 43 Copynumber: 4.2 Consensus size: 43
25983 CTCTACCCCC
*
25993 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCC-TCTTTCTT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTTCTT
* * * * *
26035 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTTCTT
***
26078 TTGTCCTCAAAGAGCAGGACGTTCTTCA-TTTCCTTGTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTT-TTTT--CTT
* * * * *
26123 CTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTTCTT
1 -TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTTCTT
26167 TTGTCCTC
1 TTGTCCTC
26175 GAAAAGTAGG
Statistics
Matches: 116, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
42 38 0.33
43 40 0.34
44 3 0.03
45 2 0.02
46 26 0.22
47 7 0.06
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTTCTT
Found at i:26095 original size:43 final size:41
Alignment explanation
Indices: 25993--26293 Score: 186
Period size: 42 Copynumber: 7.3 Consensus size: 41
25983 CTCTACCCCC
* * *
25993 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCT-TTTCCT
26035 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCC-TTT-TCCT
*
26078 TTGTCCTCAAAGAGCAGGACG-TTCTTCA-TTTCCTTGTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTTCC---TTTT-CCT
* ** * *
26122 TCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTTCTT
1 T-T-GTCCTCAAAGAGCAGGACGCATTTCATTTTCC--TTTTCCT
* *
26167 TTGTCCTCGAAA-AGTAGGACG----T-ACTTT--TTTTCTCT
1 TTGTCCTC-AAAGAGCAGGACGCATTTCATTTTCCTTTTC-CT
26202 TTGTCCTC-AAGAAGCAGGACGC-TTTCCA--TTCCTTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACGCATTT-CATTTTCC--TTTTCCT
* *
26243 TTGTCCTCAAGGAGC-GAGAC-CTATTTCATTCT-CTTTTCCT
1 TTGTCCTCAAAGAGCAG-GACGC-ATTTCATTTTCCTTTTCCT
26283 TTGTCCTCAAA
1 TTGTCCTCAAA
26294 AAGTGGGACA
Statistics
Matches: 210, Mismatches: 20, Indels: 60
0.72 0.07 0.21
Matches are distributed among these distances:
33 2 0.01
34 5 0.02
35 17 0.08
38 6 0.03
39 1 0.00
40 20 0.10
41 18 0.09
42 51 0.24
43 43 0.20
44 12 0.06
45 4 0.02
46 25 0.12
47 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (41 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCCT
Found at i:26291 original size:40 final size:41
Alignment explanation
Indices: 26194--26292 Score: 123
Period size: 41 Copynumber: 2.4 Consensus size: 41
26184 GACGTACTTT
*
26194 TTTTCTCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCCTT
1 TTTTC-CTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCCTC
* *
26236 TTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT-CTC
1 TTTTCCTTTGTCCTCAAGAAGCAG-GACGCT-TTCCATTCCTC
26276 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
26293 AAAGTGGGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
40 22 0.42
41 25 0.48
42 5 0.10
ACGTcount: A:0.16, C:0.28, G:0.13, T:0.42
Consensus pattern (41 bp):
TTTTCCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCCTC
Found at i:26767 original size:61 final size:60
Alignment explanation
Indices: 26684--27022 Score: 317
Period size: 61 Copynumber: 5.6 Consensus size: 60
26674 TAGGGACAAA
* * *
26684 TTGGTGGCACCTTCTAAG-CCTCAAAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGAG
1 TTGGTGGCAACTT-TTAGTCCTCAAAGAGCAGGACA-CTTTTTCTTTCAAAGCCCACACGAG
* * * * * * *
26745 TTGGTAGCAACTTTTAGTCCTCAAAGAACATGATGACTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGA-CACTTTTTCTTTCAAAGCCCACACGAG
* * * *
26806 TTGGTGGCAGCTTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAG-CAGGACACTTTTTCT-TTCAAAGCCCACACGAG
* * * * * *
26867 TTGGTGGCACCTTTTTGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGCAAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAGC-AGGAC-ACTTTTTCTTTCAAAGCCCACACGAG
* * * * * * * *
26928 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCTTTTTATTTTCGAAGCACACATGAG
1 TTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGACACTTTTT-CTTTCAAAGCCCACACGAG
26989 TTGGTGGC-ACTTTTTAGTCCTCAAAGAGCAGGAC
1 TTGGTGGCAAC-TTTTAGTCCTCAAAGAGCAGGAC
27023 GCCTTTTCCT
Statistics
Matches: 225, Mismatches: 43, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
60 19 0.08
61 198 0.88
62 8 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (60 bp):
TTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGACACTTTTTCTTTCAAAGCCCACACGAG
Found at i:26910 original size:122 final size:121
Alignment explanation
Indices: 26684--27023 Score: 364
Period size: 122 Copynumber: 2.8 Consensus size: 121
26674 TAGGGACAAA
* * * * *
26684 TTGGTGGCACCTTCTAAG-CCTCAAAGAGCAGGACATCTTTT-TCCTTCAAAGCCCACACGAGTT
1 TTGGTGGCACCTT-TCAGTCCTAAAAGAGCAAGACACCTTTTAT-ATTCAAAGCCCACACGAGTT
* * * * * *
26747 GGTAGCAACTTTTAGTCCTCAAAGAACATGATGACTTTTTCTTTTAAAGCCCACGCAAG
64 GGTGGC-ACTTTTTGTCCTCAAAGAGCATGACGACTATTTCTTTCAAAGCCCACGCAAG
* * * * *
26806 TTGGTGGCAGCTTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAG-CAAGACACCTTTTATATTCAAAGCCCACACGAGTTG
*
26870 GTGGCACCTTTTTGTCCTCAAAGAGC-TAGACGTCTATTTCTTTCAAAGCCCACGCAAG
65 GTGGCA-CTTTTTGTCCTCAAAGAGCAT-GACGACTATTTCTTTCAAAGCCCACGCAAG
* * * * * * *
26928 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCTTTTTATTTTCGAAGCACACATGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACACCTTTTATATTCAAAGCCCACACGAGTTGG
*
26993 TGGCACTTTTTAGTCCTCAAAGAGCAGGACG
66 TGGCACTTTTT-GTCCTCAAAGAGCATGACG
27024 CCTTTTCCTC
Statistics
Matches: 184, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
121 12 0.07
122 170 0.92
123 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (121 bp):
TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACACCTTTTATATTCAAAGCCCACACGAGTTGG
TGGCACTTTTTGTCCTCAAAGAGCATGACGACTATTTCTTTCAAAGCCCACGCAAG
Found at i:26993 original size:183 final size:183
Alignment explanation
Indices: 26684--27030 Score: 425
Period size: 183 Copynumber: 1.9 Consensus size: 183
26674 TAGGGACAAA
* *
26684 TTGGTGGCACCTTCTAAGCCTCAAAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTCTAAGCCTCAAAGAGCAGGACATCTATTTCCTTCAAAGCCCACACAAGTTGG
* * * * * *
26749 TAGCAACTTTTAGTCCTCAAAGAACATGATGACTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
66 TAGCAACTTTCAGTCCTCAAAGAACAAGACGACTTTTTATTTTAAAGCACACACAAGTTGGTGGC
26814 AGC-TTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAG
131 A-CTTTTTAGTCCTAAAAGAG-CAGGACACCTTTTCTATTCAAAGCCCTCACGAG
** * * *
26867 TTGGTGGCACCTT-TTTGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGCAAGTT
1 TTGGTGGCACCTTCTAAG-CCTCAAAGAGC-AGGACATCTATTTCCTTCAAAGCCCACACAAGTT
* * * * **
26930 GGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CTTTTTATTTTCGAAGCACACATGAGTTGGT
64 GGTAGCAACTTTCAGTCCTCAAAGAACAAGACGACTTTTTATTTT-AAAGCACACACAAGTTGGT
* *
26994 GGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
128 GGCACTTTTTAGTCCTAAAAGAGCAGGACACCTTTTC
27031 CTCTACCCCC
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
182 14 0.10
183 123 0.89
184 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (183 bp):
TTGGTGGCACCTTCTAAGCCTCAAAGAGCAGGACATCTATTTCCTTCAAAGCCCACACAAGTTGG
TAGCAACTTTCAGTCCTCAAAGAACAAGACGACTTTTTATTTTAAAGCACACACAAGTTGGTGGC
ACTTTTTAGTCCTAAAAGAGCAGGACACCTTTTCTATTCAAAGCCCTCACGAG
Found at i:27143 original size:43 final size:42
Alignment explanation
Indices: 27041--27341 Score: 197
Period size: 43 Copynumber: 7.3 Consensus size: 42
27031 CTCTACCCCC
* * * *
27041 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTCCT
*
27083 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCC-TTTTTCCT
*
27126 TTGTCCTCAAAGAGCAGGACG-TTCTTCA-TTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTTCC-T-TTTT-CCT
* ** * *
27170 TCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTTCTT
1 T-T-GTCCTCAAAGAGCAGGACGCATTTCATTTTCC-TTTTTCCT
* * *
27215 TTGTCCTCGAAA-AGTAGGACG---TAC-TTTT--TTTCT-CT
1 TTGTCCTC-AAAGAGCAGGACGCATTTCATTTTCCTTTTTCCT
*
27250 TTGTCTTC-AAGAAGCAGGACGC-TTTCCA--TTCCTTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACGCATTT-CATTTTCC-TTTTTCCT
* *
27291 TTGTCCTCAAGGAGC-GAGAC-CTATTTCATTCT-C-TTTTCCT
1 TTGTCCTCAAAGAGCAG-GACGC-ATTTCATTTTCCTTTTTCCT
27331 TTGTCCTCAAA
1 TTGTCCTCAAA
27342 AAGTGGGACA
Statistics
Matches: 207, Mismatches: 27, Indels: 52
0.72 0.09 0.18
Matches are distributed among these distances:
33 2 0.01
35 16 0.08
36 4 0.02
37 3 0.01
38 1 0.00
39 4 0.02
40 25 0.12
41 17 0.08
42 45 0.22
43 46 0.22
44 8 0.04
45 4 0.02
46 24 0.12
47 8 0.04
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTCCT
Found at i:27212 original size:46 final size:43
Alignment explanation
Indices: 27041--27341 Score: 167
Period size: 42 Copynumber: 7.3 Consensus size: 43
27031 CTCTACCCCC
** * * *
27041 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCC-TCTTT-CTT
1 TTGTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTTTTTCCCT
* * *
27083 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCT-CCT
1 TTGTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTTTTTCCCT
*
27126 TTGTCCTCAAAGAGCAGGACGT-TCTTCATTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGTAT-TTCTTTTCCTT-TTTTCCCT
* * *
27170 TCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTT-CTT
1 T-T-GTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTTTTTCCCT
* *
27215 TTGTCCTCGAAA-AGTAGGACGTA---C---T--TTTTTTCTCT
1 TTGTCCTC-AAAGAGCAGGACGTATTTCTTTTCCTTTTTTCCCT
* * **
27250 TTGTCTTC-AAGAAGCAGGACG-CTTTCCATTCCTTTTTT-CCT
1 TTGTCCTCAAAG-AGCAGGACGTATTTCTTTTCCTTTTTTCCCT
* * * *
27291 TTGTCCTCAAGGAGC-GAGACCTATTTC-ATT-CTCTTTT-CCT
1 TTGTCCTCAAAGAGCAG-GACGTATTTCTTTTCCTTTTTTCCCT
27331 TTGTCCTCAAA
1 TTGTCCTCAAA
27342 AAGTGGGACA
Statistics
Matches: 208, Mismatches: 28, Indels: 48
0.73 0.10 0.17
Matches are distributed among these distances:
33 2 0.01
34 6 0.03
35 16 0.08
36 1 0.00
37 1 0.00
40 22 0.11
41 18 0.09
42 51 0.25
43 46 0.22
44 8 0.04
45 4 0.02
46 25 0.12
47 8 0.04
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACGTATTTCTTTTCCTTTTTTCCCT
Found at i:27221 original size:89 final size:85
Alignment explanation
Indices: 27041--27240 Score: 224
Period size: 89 Copynumber: 2.3 Consensus size: 85
27031 CTCTACCCCC
** * *
27041 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCA
1 TTGTCCTCAAAGAGCAGGACGTACTTCATTTTCCTCTTTCTTTAGTCCTCAAAGAGCAGGACACA
27106 TTTCATTTTCCGTTTCTCCT
66 TTTCATTTTCCGTTTCTCCT
* *
27126 TTGTCCTCAAAGAGCAGGACGTTCTTCA-TTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCATG
1 TTGTCCTCAAAGAGCAGGACGTACTTCATTTTCC-TC-TTT--CTT-TAGTCCTCAAAGAGCAGG
* * * * *
27190 ACATATTTCGTTTTCCTTTTTTCTT
61 ACACATTTCATTTTCCGTTTCTCCT
*
27215 TTGTCCTCGAAA-AGTAGGACGTACTT
1 TTGTCCTC-AAAGAGCAGGACGTACTT
27241 TTTTTCTCTT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
84 5 0.05
85 27 0.28
86 3 0.03
88 3 0.03
89 55 0.57
90 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (85 bp):
TTGTCCTCAAAGAGCAGGACGTACTTCATTTTCCTCTTTCTTTAGTCCTCAAAGAGCAGGACACA
TTTCATTTTCCGTTTCTCCT
Found at i:27327 original size:42 final size:41
Alignment explanation
Indices: 27240--27340 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
27230 AGGACGTACT
*
27240 TTTTTTCTCTTTGTCTTCAAGAAGCAGGACGCTTTCCATTCC
1 TTTTTTC-CTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCC
* *
27282 TTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT-C
1 TTTTTTCCTTTGTCCTCAAGAAGCAG-GACGCT-TTCCATTCC
*
27322 TCTTTTCCTTTGTCCTCAA
1 TTTTTTCCTTTGTCCTCAA
27341 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
40 22 0.42
41 24 0.45
42 7 0.13
ACGTcount: A:0.16, C:0.27, G:0.13, T:0.45
Consensus pattern (41 bp):
TTTTTTCCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCC
Found at i:27801 original size:61 final size:60
Alignment explanation
Indices: 27726--28077 Score: 382
Period size: 61 Copynumber: 5.8 Consensus size: 60
27716 AGGTATAGGG
* * * *
27726 ACGAATTGGTGGCA-CTTTCTAGGCCTCAAAGAGCAGGACATCTTTTTCCTTCAATGCCCAC
1 ACGAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCAGGACA-CTTTTTCTTTCAAAGCCCAC
* * *
27787 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA-CACTTTTTCTTTCAAAGCCCAC
* * ** * * * * *
27848 GCAAGTTGGTGGCAGTTTTTAGTCCTAAAAGAGCCGAACACCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACTTTTTC-TTTCAAAGCCCAC
* *
27909 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACACCTATTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACA-CTTTTTCTTTCAAAGCCCAC
* * * * * * *
27970 GCAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCACAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACTTTTTC-TTTCAAAGCCCAC
* * * *
28031 ACTAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACACCTTTTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACTTTTTC
28078 CTCTACCCCT
Statistics
Matches: 241, Mismatches: 45, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
60 12 0.05
61 219 0.91
62 10 0.04
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACTTTTTCTTTCAAAGCCCAC
Found at i:27957 original size:122 final size:121
Alignment explanation
Indices: 27731--28077 Score: 430
Period size: 122 Copynumber: 2.9 Consensus size: 121
27721 TAGGGACGAA
* * * * * * *
27731 TTGGTGGCACTTTCTAGGCCTCAAAGAGCAGGACATCTTTT-TCCTTCAATGCCCACACGAGTTG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCCGAACACCTTTTCT-TTTCAAAGCCCACACGAGTTG
* * * * *
27795 GTGGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCACGCAAG
65 GTGGCACCTTTTAGTCCTCAAAGAGCTGGA-CACCTTTTCTTTCAAAGCCCACGCAAG
* * *
27853 TTGGTGGCAGTTTTTAGTCCTAAAAGAGCCGAACACCTTTTCTTTTCAAAGCCCTCACGAGTTGG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCCGAACACCTTTTCTTTTCAAAGCCCACACGAGTTGG
27918 TGGCACCTTTTAGTCCTCAAAGAGCTGGACACCTATTTCTTTCAAAGCCCACGCAAG
66 TGGCACCTTTTAGTCCTCAAAGAGCTGGACACCT-TTTCTTTCAAAGCCCACGCAAG
* * * * * *
27975 TTGGTGGCACCTTTCAGTCCTCAAAGAG-CAAGACGCCTTTTCTTTTCAAAGCACACACTAGTTG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCCGA-ACACCTTTTCTTTTCAAAGCCCACACGAGTTG
*
28039 GTGGCACTTTTTAGTCCTCAAAGAG-TAGGACACCTTTTC
65 GTGGCACCTTTTAGTCCTCAAAGAGCT-GGACACCTTTTC
28078 CTCTACCCCT
Statistics
Matches: 196, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
121 10 0.05
122 185 0.94
123 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (121 bp):
TTGGTGGCACTTTTTAGTCCTCAAAGAGCCGAACACCTTTTCTTTTCAAAGCCCACACGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCTGGACACCTTTTCTTTCAAAGCCCACGCAAG
Found at i:28040 original size:183 final size:183
Alignment explanation
Indices: 27726--28077 Score: 474
Period size: 183 Copynumber: 1.9 Consensus size: 183
27716 AGGTATAGGG
* * * *
27726 ACGAATTGGTGGCACTTTCTAGGCCTCAAAGAGCAGGACATCTTTTTCCTTCAATGCCCACACGA
1 ACGAATTGGTGGCACTTTCTAGGCCTCAAAGAGCAGGACACCTATTTCCTTCAAAGCCCACACAA
* * * * * *
27791 GTTGGTGGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCACGCAAGTTG
66 GTTGGTGGCACCTTTCAGTCCTCAAAGAACAAGACGACCTTTTCTTTTAAAGCACACACAAGTTG
* *
27856 GTGGCAGTTTTTAGTCCTAAAAGAGCCGAACACCTTTTCTTTTCAAAGCCCTC
131 GTGGCACTTTTTAGTCCTAAAAGAGCAGAACACCTTTTCTTTTCAAAGCCCTC
* * * * *
27909 ACGAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCTGGACACCTATTTCTTTCAAAGCCCACGCA
1 ACGAATTGGTGGCA-CTTTCTAGGCCTCAAAGAGCAGGACACCTATTTCCTTCAAAGCCCACACA
* *
27973 AGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCACACACTAGT
65 AGTTGGTGGCACCTTTCAGTCCTCAAAGAACAAGACGACCTTTTCTTTT-AAAGCACACACAAGT
* * *
28037 TGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACACCTTTTC
129 TGGTGGCACTTTTTAGTCCTAAAAGAGCAGAACACCTTTTC
28078 CTCTACCCCT
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
182 10 0.07
183 131 0.90
184 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (183 bp):
ACGAATTGGTGGCACTTTCTAGGCCTCAAAGAGCAGGACACCTATTTCCTTCAAAGCCCACACAA
GTTGGTGGCACCTTTCAGTCCTCAAAGAACAAGACGACCTTTTCTTTTAAAGCACACACAAGTTG
GTGGCACTTTTTAGTCCTAAAAGAGCAGAACACCTTTTCTTTTCAAAGCCCTC
Found at i:28137 original size:45 final size:44
Alignment explanation
Indices: 28087--28312 Score: 191
Period size: 42 Copynumber: 5.2 Consensus size: 44
28077 CCTCTACCCC
*
28087 TTGTCCTCAAACAGCAGGACACACTTCA-TTTCCTTCATTTCCTTT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTC-TTTCC-TT
* * *
28132 TTGTCCTCAAAGAGTAGGACGCACTTTATTTTCC-TCTTT-CTT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTCTTTCCTT
*
28174 TTGTCCTCAAAGAGCAGGACGA-ATTTCATTTTCCTT-TTCTCC-T
1 TTGTCCTCAAAGAGCAGGAC-ACACTTCATTTTCCTTCTT-TCCTT
* ** *
28217 TTGTCCTCAAAGAGCAAGATGCTCTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTC-TTT-CCTT
* * * * * *
28262 CTAGTCTTCAAAGAGCATGACATATTTCCTTTTCCTT-TTTCC-T
1 -TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTCTTTCCTT
28305 TTGTCCTC
1 TTGTCCTC
28313 GAAAAGTAGG
Statistics
Matches: 145, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
42 46 0.32
43 28 0.19
44 10 0.07
45 30 0.21
46 24 0.17
47 7 0.05
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTTCTTTCCTT
Found at i:29042 original size:122 final size:122
Alignment explanation
Indices: 28864--29165 Score: 408
Period size: 122 Copynumber: 2.5 Consensus size: 122
28854 AACATTTTCC
* * * *
28864 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACATCTTTTTCTTTTA
1 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCA
* * * **
28929 AAGCCCACGCAAGTTGGTGGCAGCTTTTAGTCCTAAAAGAGCCGGACACCTTTTCTA
66 AAGCCCACGCAAGTTGGTGGCACCTATCAGTCCTAAAAGAGCAAGACACCTTTTCTA
*
28986 TTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCA
1 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCA
* * *
29051 AAGCCCACGCAAGTTGGTGGCACCTATCAGTCCTCAAAGAGCAAGACGCCTTTTCTT
66 AAGCCCACGCAAGTTGGTGGCACCTATCAGTCCTAAAAGAGCAAGACACCTTTTCTA
* ** * * * *
29108 TTCGAAGTACACGCGATTTGGTGGCACTTTTTAGTCCTCAAAGAG-TAGGACGCCTTTT
1 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTT
29166 CCTCTACCCC
Statistics
Matches: 158, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
121 1 0.01
122 157 0.99
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (122 bp):
TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCA
AAGCCCACGCAAGTTGGTGGCACCTATCAGTCCTAAAAGAGCAAGACACCTTTTCTA
Found at i:29131 original size:183 final size:183
Alignment explanation
Indices: 28814--29166 Score: 431
Period size: 183 Copynumber: 1.9 Consensus size: 183
28804 AAGGTATAGG
* * *
28814 CACGAATTGGTGGCACCTTCTAGGCCTCGAAGAGCAGGATAACATTTTCCTTCAAAGCCCACACG
1 CACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACAACATTTTCCTTCAAAGCCCACACA
* * * * * *
28879 AGTTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACATCTTTTTCTTTTAAAGCCCACGCAAGTT
66 AGTTGGTGGCACCTATCAGTCCTCAAAGAACAAGACAGCCTTTTCTTTTAAAGCACACGCAAGTT
*
28944 GGTGGCAGC-TTTTAGTCCTAAAAGAGCCGGACACCTTTTCTATTCAAAGCCCT
131 GGTGGCA-CTTTTTAGTCCTAAAAGAGCAGGACACCTTTTCTATTCAAAGCCCT
* * * * ** * * *
28997 CACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
1 CACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACAACATTTTCCTTCAAAGCCCACACA
* * * * *
29062 AGTTGGTGGCACCTATCAGTCCTCAAAGAGCAAGAC-GCCTTTTCTTTTCGAAGTACACGCGATT
66 AGTTGGTGGCACCTATCAGTCCTCAAAGAACAAGACAGCCTTTTCTTTT-AAAGCACACGCAAGT
* * *
29126 TGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACGCCTTTTC
130 TGGTGGCACTTTTTAGTCCTAAAAGAGCAGGACACCTTTTC
29167 CTCTACCCCC
Statistics
Matches: 141, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
182 11 0.08
183 130 0.92
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (183 bp):
CACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACAACATTTTCCTTCAAAGCCCACACA
AGTTGGTGGCACCTATCAGTCCTCAAAGAACAAGACAGCCTTTTCTTTTAAAGCACACGCAAGTT
GGTGGCACTTTTTAGTCCTAAAAGAGCAGGACACCTTTTCTATTCAAAGCCCT
Found at i:29160 original size:61 final size:61
Alignment explanation
Indices: 28820--29166 Score: 358
Period size: 61 Copynumber: 5.7 Consensus size: 61
28810 TAGGCACGAA
* * * ** * * * *
28820 TTGGTGGCACCTTCTAGGCCTCGAAGAGCAGGATAACATTTTC-CTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA-CGCCTTTTCTTTTCAAAGCCCACGCAAG
* * *
28881 TTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACATCTTTTTCTTTT-AAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-GCCTTTTCTTTTCAAAGCCCACGCAAG
* * * * * * * *
28942 TTGGTGGCAGCTTTTAGTCCTAAAAGAGCCGGACACCTTTTCTATTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACGCAAG
* *
29003 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT-TCTTTCAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACGCAAG
* * * * ** * *
29064 TTGGTGGCACCTATCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCGAAGTACACGCGAT
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACGCAAG
* *
29125 TTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACGCCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
29167 CTCTACCCCC
Statistics
Matches: 237, Mismatches: 44, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
60 10 0.04
61 224 0.95
62 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACGCAAG
Found at i:29227 original size:45 final size:45
Alignment explanation
Indices: 29177--29416 Score: 185
Period size: 43 Copynumber: 5.5 Consensus size: 45
29167 CTCTACCCCC
*
29177 TTGTCCTCAAAGAGCAGGATGCACTTCA-TTTCCTTCTTTTCCTTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTCTTTTCC-TT
* * * *
29222 TTGTCCTCAAAGAGTAGGATGCATTTTATTTTCC-TC-TTT-CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTCTTTTCCTT
* * * *
29264 TTGTCCCCAAAGAGCA-TAGCGCATTTCATTTTCCTT-TTCTCC-T
1 TTGTCCTCAAAGAGCAGGA-CGCACTTCATTTTCCTTCTTTTCCTT
* * *
29307 TTGTCCTCAAAGAGCAAGACGCTCGTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTCTTTT-CCTT
* * ** * **
29352 CTAGTCCTCAAAGAGCATGACATATTTTGTTTTCCTT-TTTTCC-T
1 -TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTCTTTTCCTT
* *
29396 TTGTCCTCAAAAAGTAGGACG
1 TTGTCCTCAAAGAGCAGGACG
29417 TACTCTTTTT
Statistics
Matches: 155, Mismatches: 29, Indels: 24
0.75 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 36 0.23
43 45 0.29
44 8 0.05
45 30 0.19
46 28 0.18
47 7 0.05
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTCTTTTCCTT
Found at i:29339 original size:42 final size:44
Alignment explanation
Indices: 29177--29406 Score: 179
Period size: 42 Copynumber: 5.2 Consensus size: 44
29167 CTCTACCCCC
* * * *
29177 TTGTCCTCAAAGAGCAGGATGCACTTCA-TTTCCTTCTTTTCCTTT
1 TTGTCCTCAAAGAGCAAGACGCATTTCATTTTCCTTCTTCTCC--T
* * * * *
29222 TTGTCCTCAAAGAGTAGGATGCATTTTATTTTCC-TCTT-TCTT
1 TTGTCCTCAAAGAGCAAGACGCATTTCATTTTCCTTCTTCTCCT
*
29264 TTGTCCCCAAAGAGCATAG-CGCATTTCATTTTCCTT-TTCTCCT
1 TTGTCCTCAAAGAGCA-AGACGCATTTCATTTTCCTTCTTCTCCT
* *
29307 TTGTCCTCAAAGAGCAAGACGC-TCGTCA-TTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGCAAGACGCAT-TTCATTTTCCTTCTTCT-CCT
* ** ** *
29351 TCTAGTCCTCAAAGAGCATGACATATTTTGTTTTCCTT-TTTTCCT
1 T-T-GTCCTCAAAGAGCAAGACGCATTTCATTTTCCTTCTTCTCCT
29396 TTGTCCTCAAA
1 TTGTCCTCAAA
29407 AAGTAGGACG
Statistics
Matches: 154, Mismatches: 19, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
42 40 0.26
43 38 0.25
44 7 0.05
45 34 0.22
46 27 0.18
47 8 0.05
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.42
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAAGACGCATTTCATTTTCCTTCTTCTCCT
Found at i:30138 original size:122 final size:122
Alignment explanation
Indices: 29921--30262 Score: 434
Period size: 122 Copynumber: 2.8 Consensus size: 122
29911 GGACGAATGG
* * * ** *
29921 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGTTGGTG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGTTGGTG
* * * * * *
29985 GCACCTTTTAGTGCTCAAAGAGCTAGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTA
65 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTA
* * ** * *
30043 GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* *
30108 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGTAAGTTG
66 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTA
* * *
30165 GTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* *
30230 CACTTTTTAGTCCTCAAAGAGCAGGACGCTCTT
66 CACCTTTTAGTCCTCAAAGAGCTGGACG-TCTT
30263 CATTTCCTCC
Statistics
Matches: 189, Mismatches: 29, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
122 184 0.97
123 5 0.03
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTA
Found at i:30240 original size:183 final size:182
Alignment explanation
Indices: 29920--30251 Score: 445
Period size: 183 Copynumber: 1.8 Consensus size: 182
29910 GGGACGAATG
* *
29920 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGGTG
1 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACAAGTTGGTG
* * * * * *
29985 GCACCTTTTAGTGCTCAAAGAGCTAGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAG
66 GCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTTAAAGCCCA-GCAAGTTAGTGGCAG
30050 CTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
130 CTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
** * * **
30103 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGTAAGTTGGTG
1 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACAAGTTGGTG
* *
30168 GCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCA-CATGAGTTGGTGGC
66 GCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTT-AAAGCCCAGCA--AGTTAGTGGC
*
30231 A-CTTTTTAGTCCTCAAAGAGC
128 AGC-TTTTAGTCCTAAAAGAGC
30252 AGGACGCTCT
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
181 2 0.02
182 11 0.09
183 115 0.90
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (182 bp):
GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACAAGTTGGTG
GCACCTTTCAGTCCTCAAAGAGCAAGACGTCCTTTTCTTTTAAAGCCCAGCAAGTTAGTGGCAGC
TTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
Found at i:30258 original size:61 final size:61
Alignment explanation
Indices: 29920--30258 Score: 362
Period size: 61 Copynumber: 5.6 Consensus size: 61
29910 GGGACGAATG
** ** *
29920 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGTT
1 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAGTT
* * * * ** *
29981 GGTGGCACCTTTTAGTGCTCAAAGAGCTA-GACGTCTTTTTCTTTT-AACGCGCAGGCAAGTT
1 GGTGGCACCTTTTAGTCCTCAAAGAGC-AGGACG-CCTTTTCTTTTCAAAGCCCACACGAGTT
* * * * * *
30042 AGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
* * ***
30103 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT-TCTTTCAAAGCCCACGTAAGTT
1 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAGTT
* * * *
30164 GGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACATGAGTT
1 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
*
30225 GGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGC
1 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGC
30259 TCTTCATTTC
Statistics
Matches: 226, Mismatches: 45, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
60 11 0.05
61 205 0.91
62 9 0.04
63 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (61 bp):
GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
Found at i:30379 original size:43 final size:43
Alignment explanation
Indices: 30239--30476 Score: 195
Period size: 43 Copynumber: 5.4 Consensus size: 43
30229 GCACTTTTTA
*
30239 GTCCTCAAAGAGCAGGACGC-TCTTCATTTCCTCCTTTTC-CATTTT
1 GTCCTCAAAGAGCAGGACGCAT-TTCATTT--TCCTTTTCTC-CTTT
* * *
30284 GTCCTCAAAGAGTAGGACGCACTTT-TTTTTTCTCTTTCT--TTT
1 GTCCTCAAAGAGCAGGACGCA-TTTCATTTTCCT-TTTCTCCTTT
*
30326 GTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCTTT
* * ** *
30369 GTCGTCAAAGAGTAGGATTC-TCTTCA-TTTCCTTATTTTCCCTTCT
1 GTCCTCAAAGAGCAGGACGCAT-TTCATTTTCCTT-TTCT-CCTT-T
* * *
30414 AGTCCTCAAAGAGCAGCACACATTTCATTTTCCTTTTTTCCTTT
1 -GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCTTT
30458 GTCCTCGAAA-AGCAGGACG
1 GTCCTC-AAAGAGCAGGACG
30477 TACTCTTTTT
Statistics
Matches: 159, Mismatches: 19, Indels: 32
0.76 0.09 0.15
Matches are distributed among these distances:
41 8 0.05
42 37 0.23
43 41 0.26
44 12 0.08
45 27 0.17
46 25 0.16
47 9 0.06
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.39
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCTTT
Found at i:30528 original size:42 final size:41
Alignment explanation
Indices: 30482--30582 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 41
30472 GGACGTACTC
30482 TTTTTCACTTTGTCCTCAAGAACC-AGGACACT-TTCCATTCCTT
1 TTTTTC-CTTTGTCCTCAAGAACCGA-GAC-CTATTCCATT-CTT
* * * *
30525 TTTTTCCTTTGTTCTCAAGGAGCGAGACCTATTTCATTC-T
1 TTTTTCCTTTGTCCTCAAGAACCGAGACCTATTCCATTCTT
30565 TTTTTCCTTTGTCCTCAA
1 TTTTTCCTTTGTCCTCAA
30583 AAAGTGGGAC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
40 18 0.35
41 3 0.06
42 23 0.45
43 7 0.14
ACGTcount: A:0.18, C:0.27, G:0.11, T:0.45
Consensus pattern (41 bp):
TTTTTCCTTTGTCCTCAAGAACCGAGACCTATTCCATTCTT
Found at i:30975 original size:61 final size:62
Alignment explanation
Indices: 30869--31000 Score: 178
Period size: 61 Copynumber: 2.2 Consensus size: 62
30859 GAAACAGCCA
* *
30869 GACGCC-TTTTCTTTTCAAAGCCCACACGAGTTGATGGCTCCTTTTAGTCCCCAAAGAGCAG
1 GACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGATGGCACCTTTTAGTCCCCAAAGAGCAG
* * * * * *
30930 GACGGCTTTTTCTTTT-AAAGCCCACGCAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAG
1 GACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGATGGCACCTTTTAGTCCCCAAAGAGCAG
30991 GACGCCTTTT
1 GACGCCTTTT
31001 CCTCTTCCCC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 52 0.85
62 9 0.15
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (62 bp):
GACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGATGGCACCTTTTAGTCCCCAAAGAGCAG
Found at i:31031 original size:38 final size:43
Alignment explanation
Indices: 30976--31207 Score: 142
Period size: 42 Copynumber: 5.4 Consensus size: 43
30966 GCACTTTTTA
*
30976 GTCCTCAAAGAGTAGGACGC-C-T-TTTCC-TC-TTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTATTTCCTTCTTTCCCCCTT
**
31014 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTT-ATTTCCTTC-TTTCCCCCTT
* **
31059 GTCCTCAAAGAGCAGGATGCACTTTACTTTCC-TCTTT--CTTTT
1 GTCCTCAAAGAGCAGGACGCAC-TTA-TTTCCTTCTTTCCCCCTT
* * * * * * *
31101 ATCCTCAAAGAGCAAGACGAATTTCGTTTTCC-T-TTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTT--ATTTCCTTCTTTCCCCCTT
* * * * * *
31144 GTCCTCAAATAGAAGGACGCTCTTCATTACCTTCTTTTCCCTTCTA
1 GTCCTCAAAGAGCAGGACGCACTT-ATTTCCTTC-TTTCCC-CCTT
31190 GTCCTCAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
31208 ACATTTCGTT
Statistics
Matches: 150, Mismatches: 27, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
38 19 0.13
39 1 0.01
40 1 0.01
41 5 0.03
42 37 0.25
43 24 0.16
44 3 0.02
45 36 0.24
46 24 0.16
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCACTTATTTCCTTCTTTCCCCCTT
Found at i:31061 original size:45 final size:45
Alignment explanation
Indices: 31012--31251 Score: 214
Period size: 43 Copynumber: 5.5 Consensus size: 45
31002 CTCTTCCCCC
31012 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
31057 TTGTCCTCAAAGAGCAGGATGCACTTTACTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * * * *
31099 TTATCCTCAAAGAGCAAGACGAATTTCGTTT--TCCTTTTCTCC-T
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * *
31142 TTGTCCTCAAATAGAAGGACGCTCTTCATTACCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * *
31187 CTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTT-TTTT-CC-T
1 -TTGTCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTCTTTTCCCTT
31231 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
31252 TACTCTTTTT
Statistics
Matches: 153, Mismatches: 30, Indels: 26
0.73 0.14 0.12
Matches are distributed among these distances:
40 1 0.01
41 6 0.04
42 24 0.16
43 38 0.25
44 10 0.07
45 38 0.25
46 30 0.20
47 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.38
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:31863 original size:61 final size:59
Alignment explanation
Indices: 31755--31914 Score: 205
Period size: 61 Copynumber: 2.6 Consensus size: 59
31745 GATGAATTAC
* *
31755 TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCACACAAGTTGG
1 TGGCA-CTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTAAAGCCCACACAAGTTGG
* * *
31816 TGGTAGCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
1 TGGCA-CTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGG
*
31877 TGGCACTATTTTA-TCCTCAAAGAGCAGGACACCTTTTC
1 TGGCAC--TTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
31915 CTCTTCCCCC
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
60 11 0.13
61 72 0.83
62 4 0.05
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (59 bp):
TGGCACTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGG
Found at i:31975 original size:45 final size:45
Alignment explanation
Indices: 31885--32145 Score: 173
Period size: 42 Copynumber: 6.1 Consensus size: 45
31875 GGTGGCACTA
*
31885 TTTTATCCTCAAAGAGCAGGA--CAC--C-TTTTCC-TC-TTCCC
1 TTTTATCCTCAAAGAGCAGGATGCACTTCATTTTCCTTCTTTTCC
** *
31923 CCTTGTCCTCAAAGAGCAGGATGCACTTCA-TTTCCTTCTTTTCAC
1 TTTTATCCTCAAAGAGCAGGATGCACTTCATTTTCCTTCTTTTC-C
* * *
31968 TTTTGTCCTCAAAGGGCAGGACT-CACTTTATTTTCC-TC-TTT-C
1 TTTTATCCTCAAAGAGCAGGA-TGCACTTCATTTTCCTTCTTTTCC
* * * * * *
32010 TTTTACCCTCAAATACCAGGACGCA-TTAAGTTTTCCTT-TTCTCC
1 TTTTATCCTCAAAGAGCAGGATGCACTTCA-TTTTCCTTCTTTTCC
* *
32054 -TTTATCCTCAAAGAGCAGGATACTCTTCA-TTTCCTTCTTTTCCC
1 TTTTATCCTCAAAGAGCAGGATGCACTTCATTTTCCTTCTTTT-CC
* *
32098 TTCTAATCCTCAAAGAGCAGGA--CACTTTTCGTTTTCCTT-TTTTCC
1 TT-TTATCCTCAAAGAGCAGGATGCAC--TTCATTTTCCTTCTTTTCC
32143 TTT
1 TTT
32146 GTCCTCGAAA
Statistics
Matches: 173, Mismatches: 27, Indels: 40
0.72 0.11 0.17
Matches are distributed among these distances:
38 18 0.10
40 3 0.02
41 3 0.02
42 38 0.22
43 26 0.15
44 15 0.09
45 32 0.18
46 31 0.18
47 7 0.04
ACGTcount: A:0.20, C:0.29, G:0.11, T:0.40
Consensus pattern (45 bp):
TTTTATCCTCAAAGAGCAGGATGCACTTCATTTTCCTTCTTTTCC
Found at i:32868 original size:61 final size:61
Alignment explanation
Indices: 32646--32874 Score: 275
Period size: 61 Copynumber: 3.8 Consensus size: 61
32636 AGGTCTGGGG
* ** *
32646 ACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACATCTTTT-TCATTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCAC
* ** ** *
32707 AC-AGTTGGTGGCACATTTTAGGGCTCAAAGAAAAGGACGTCTTTTTCTTTT-AAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
* * *
32767 GCAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
* * *
32828 ACGAGTTGGTGGCACTTTTTAGTTCTCAAAGAGCAGGACGCATTTTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
32875 CTCTTCCGCC
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
60 50 0.36
61 89 0.64
62 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
Found at i:32874 original size:121 final size:121
Alignment explanation
Indices: 32649--32874 Score: 323
Period size: 121 Copynumber: 1.9 Consensus size: 121
32639 TCTGGGGACG
*
32649 AGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACATCTTTTTCATTCAAAGCCCACACAGTTG
1 AGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACACCTTTTTCATTCAAAGCCCACACAGTTG
*
32714 GTGGCACATTTTAGGGCTCAAAGAAAAGGACGTCTTTTTCTTTTAAAGCCCACGCA
66 GTGGCACATTTTAGGGCTCAAAGAAAAGGACGTCATTTTCTTTTAAAGCCCACGCA
* *
32770 AGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTCAAAGCCCACACGAG
1 AGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACACCTTTTTC-ATTCAAAGCCCACAC-AG
* ** **
32833 TTGGTGGCACTTTTTAGTTCTCAAAGAGCAGGACG-CATTTTC
63 TTGGTGGCACATTTTAGGGCTCAAAGAAAAGGACGTCATTTTC
32875 CTCTTCCGCC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
120 6 0.06
121 55 0.59
122 32 0.34
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (121 bp):
AGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACACCTTTTTCATTCAAAGCCCACACAGTTG
GTGGCACATTTTAGGGCTCAAAGAAAAGGACGTCATTTTCTTTTAAAGCCCACGCA
Found at i:32935 original size:44 final size:43
Alignment explanation
Indices: 32885--33123 Score: 225
Period size: 43 Copynumber: 5.5 Consensus size: 43
32875 CTCTTCCGCC
* *
32885 TTGTCCTTAAAGAGTAGGACGCACTTCA-TTTCATCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTC--CTTTTCTCTT
* *
32929 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTT-TCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCTT
* * *
32971 TTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCTT
** *
33014 TTGTCCTCAAAGAGCAGGACGCTTTTC-TTTTCTTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTC---CTTTTCTCTT
* * * * * * * *
33059 CTAGTCCTCACAGAGTAGGACACATTTCGTTTTCCTTTTTTCCT
1 -TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCTT
33103 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
33124 TACTCTTTTT
Statistics
Matches: 163, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
42 43 0.26
43 47 0.29
44 34 0.21
45 12 0.07
46 22 0.13
47 5 0.03
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.40
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCTT
Done.