Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1763736
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 2 of 14
Found at i:32984 original size:42 final size:41
Alignment explanation
Indices: 32885--33035 Score: 187
Period size: 42 Copynumber: 3.5 Consensus size: 41
32875 CTCTTCCGCC
* * * *
32885 TTGTCCTTAAAGAGTAGGACGCACTTCATTTCATCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTT--TCCTTT-TCTT
32929 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCT-TTTCTT
*
32971 TTGTCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTTCT--T
33014 TTGTCCTCAAAGAGCAGGACGC
1 TTGTCCTCAAAGAGCAGGACGC
33036 TTTTCTTTTC
Statistics
Matches: 98, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
41 8 0.08
42 37 0.38
43 25 0.26
44 28 0.29
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (41 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTT
Found at i:33045 original size:42 final size:42
Alignment explanation
Indices: 32852--33123 Score: 247
Period size: 44 Copynumber: 6.4 Consensus size: 42
32842 CTTTTTAGTT
* *
32852 CTCAAAGAGCAGGACGCA----TTTTCCTCTTC-CGCCTTGTC
1 CTCAAAGAGCAGGACGCATTTCTTTTCCTTTTCTC-CTTTGTC
* * * * *
32890 CTTAAAGAGTAGGACGCACTTCATTTCATCTTTTCTCTTTTGTC
1 CTCAAAGAGCAGGACGCATTTCTTTTC--CTTTTCTCCTTTGTC
*
32934 CTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCT--TTTGTC
1 CTCAAAGAGCAGGACGCA-TTTCTTTTCCT-TTTCTCCTTTGTC
32976 CTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTC
1 CTCAAAGAGCAGGACGCATTTC-TTTTCCTTTTCTCCTTTGTC
*
33019 CTCAAAGAGCAGGACGCTTTTCTTTTCTTTCTTTTC-CCTTCTAGTC
1 CTCAAAGAGCAGGACGCATTTCTTTTC---CTTTTCTCCTT-T-GTC
* * * *
33065 CTCACAGAGTAGGACACATTTCGTTTTCCTTTTTTCCTTTGTC
1 CTCAAAGAGCAGGACGCATTTC-TTTTCCTTTTCTCCTTTGTC
33108 CTCGAAA-AGCAGGACG
1 CTC-AAAGAGCAGGACG
33124 TACTCTTTTT
Statistics
Matches: 193, Mismatches: 21, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
38 16 0.08
41 8 0.04
42 40 0.21
43 42 0.22
44 43 0.22
45 18 0.09
46 21 0.11
47 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (42 bp):
CTCAAAGAGCAGGACGCATTTCTTTTCCTTTTCTCCTTTGTC
Found at i:33840 original size:61 final size:61
Alignment explanation
Indices: 33619--33843 Score: 301
Period size: 61 Copynumber: 3.7 Consensus size: 61
33609 TGGGGAAGAA
* ** *
33619 TTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAAGCCCACACGTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* * * * *
33680 TTGGTGCCATCTTTTAGTCCTCAAAGAGCAGGACGTCATTTTCTTTT-AAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
* *
33741 TTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* *
33802 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
33844 CTCTTCCCCC
Statistics
Matches: 141, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
60 10 0.07
61 123 0.87
62 7 0.05
63 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:33998 original size:43 final size:43
Alignment explanation
Indices: 33839--34093 Score: 216
Period size: 43 Copynumber: 5.8 Consensus size: 43
33829 GCAGGATGCC
* * * * * *
33839 TTTTCCTCTTCCCCCTTCTCCTCAAAGAGCAAGACGCACTTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* *
33882 TTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTT-A
1 TTT--TCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCA-TTTCA
* * *
33927 TTTTCCTCTTTCT--TTTGTCCTCAAAGAGCATGACACATTTCG
1 TTTTCCT-TTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
33969 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGC-TATTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCAT-TTCA
* * * *
34012 -TTTCCTTCTTTTCCTTTCTAGTCCTCAAAGAGTAGGACACATTTCG
1 TTTTCCTT-TTCTCC-TT-T-GTCCTCAAAGAGCAGGACGCATTTCA
* * *
34058 TTTTCCTTTTTTTCTTTGTCCTTGAAA-AGCAGGACG
1 TTTTCCTTTTCTCCTTTGTCC-TCAAAGAGCAGGACG
34094 TACACTTTTT
Statistics
Matches: 174, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
41 8 0.05
42 37 0.21
43 46 0.26
44 12 0.07
45 35 0.20
46 28 0.16
47 8 0.05
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.40
Consensus pattern (43 bp):
TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
Found at i:34066 original size:89 final size:85
Alignment explanation
Indices: 33857--34093 Score: 264
Period size: 89 Copynumber: 2.7 Consensus size: 85
33847 TTCCCCCTTC
* * * * * *
33857 TCCTCAAAGAGCAAGACGCACTTCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCA
1 TCCTCAAAGAGCAGGACACATTTCGTTT--TCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCA
*
33922 CTTTATTTTCCTCTTTCTTTTG
64 CTTCATTTTCCTCTTTCTTTTG
*
33944 TCCTCAAAGAGCATGACACATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTA-
1 TCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGC-AC
34008 TTCA-TTTCCTTCTTTTCCTTTCTAG
65 TTCATTTTCC-TC-TTT-CTTT-T-G
* * * *
34033 TCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTTGAAA-AGCAGGACG
1 TCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTCTCCTTTGTCC-TCAAAGAGCAGGACG
34094 TACACTTTTT
Statistics
Matches: 131, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
84 5 0.04
85 37 0.28
86 4 0.03
87 28 0.21
88 1 0.01
89 52 0.40
90 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (85 bp):
TCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACT
TCATTTTCCTCTTTCTTTTG
Found at i:34134 original size:970 final size:971
Alignment explanation
Indices: 31755--35680 Score: 6243
Period size: 972 Copynumber: 4.1 Consensus size: 971
31745 GATGAATTAC
* * *
31755 TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGT
1 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
*
31820 AGCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTA
66 ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACT-
* *
31885 TTTTA-TCCTCAAAGAGCAGGACACCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGATGCAC
130 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCAC
* * *
31949 TTCATTTCCTTCTTTTCACTTTTGTCCTCAAAGGGCAGGACTCACTTTATTTTCCTCTTTCTTTT
195 TTCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTT
** * * ** * **
32014 ACCCTCAAATACCAGGACGCATTAAGTTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGATACTC
260 GTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTC
* *
32079 TTCATTTCCTTCTTTTCCCTTCTAATCCTCAAAGAGCAGGACACTTTTCGTTTTCCTTTTTTCCT
325 TTCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCCT
* * * *
32144 TTGTCCTCGAAAAGTAGGACGTCCTTTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTT
390 TTGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGCCCTCAAGAAGCAGGACACTTTCCTTT
**
32209 CCTTTTTTCCTTTGTCCTCAAGGCGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAG
455 CCTTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAG
* * * *
32274 TGGGACAACCCTTCCATTTATTTCCCCTTCTAAAGTCTGCATAAGTTGGAAGCACCCAAAAAACC
520 TGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCC
* * * *
32339 CACACAAGTTGGTGCCAAACCTTTTCAAAGCCTATAGTAACCAACACCTATCTAAGGAGATCAAG
585 CACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAG
* *
32404 CTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-------GACAA---AATGTCGTC
650 CTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCGTC
* * *
32459 TTTTTACATGCATTTAGCTAAGCATTCTTTTTTTGCCTTCA-AGGACAAAATGGTGTCTTTT-CA
715 CTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACA-GACAAAATGGTGTCTTTTGTA
* *
32522 CTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGATACCTCATTTTGTC
779 -TTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTC
* * * *
32587 CGGGCTACTTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTCTGGGGACGAGT
843 CGGGCTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGATGAAT
* *
32652 TGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACATCTTTTTCATTCAAAGCCCACAC-AGTTGG
908 TGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
* ** **
32715 TGGCACATTTTAGGGCTCAAAGAAAAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
1 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
32780 ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
66 ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
* * * * *
32845 TTTAGTTCTCAAAGAGCAGGACGCATTTTCCTCTTCCGCCTTGTCCTTAAAGAGTAGGACGCACT
131 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACT
*
32910 TCATTT-CATCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
196 TCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
*
32974 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTTT
261 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTCT
* * * *
33039 TCTTTTCTTTCTTTTCCCTTCTAGTCCTCACAGAGTAGGACACATTTCGTTTTCCTTTTTTCCTT
326 TCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCCTT
*
33104 TGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTT-CTCCTCAAGAAGTAGGACACTTTCCTTT
391 TGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGC-CCTCAAGAAGCAGGACACTTTCCTTT
* * *
33168 -TTTTTTTCCTTTGTCCTCAAGAAACGAGACGTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAG
455 CCTTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAG
33232 TGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCC
520 TGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCC
* * *
33297 CACGCAAGTTGGTGGTAAACTTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAG
585 CACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAG
* * **
33362 CTTTAGAAAATCTCAAAATCTAGCATTGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCGTC
650 CTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCGTC
* *
33427 CTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTTTCTTCACAGACAAAATGGTGTTTTTTGTA
715 CTTTTACATGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACAGACAAAATGGTGTCTTTTGTA
* * *
33492 TTTGCCCTATTCCTAATACTCAAAAACAGCCAAAGA-GGGCAACTGTAGACACCTCATTTTGTTC
779 TTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTCC
* * *
33556 GGGCTAATTTTTCGATAACCTAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGAAGAATT
844 GGGCTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGATGAATT
* *
33621 GGTGGCACCTTCTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGTGTTGG
909 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
* * *
33684 TGCCATCTTTTAGTCCTCAAAGAGCAGGACGTCATTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
1 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
*
33749 ACCTTTCAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
66 ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
* * *
33814 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCCCTTCTCCTCAAAGAGCAAGACGCACT
131 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACT
33879 TCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
196 TCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
* * *
33944 TCCTCAAAGAGCATGACACATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTAT
261 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTCT
* * *
34009 TCATTTCCTTCTTTTCCTTTCTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCTT
326 TCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCCTT
* * *
34074 TGTCCTTGAAAAGCAGGACGTACACTTTTTCACTTTGCCCTCAAGAAGCAGGAAACTTTCCTTTC
391 TGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGCCCTCAAGAAGCAGGACACTTTCCTTTC
*
34139 CTTATTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGT
456 CTTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGT
* * * *
34204 GGGACACCGCTTCCACTTATTTCCCCTCCTAAAGTCTGCATAAGCTGGCAGCACCCAAAAAGCAC
521 GGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCC
34269 ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
586 ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
* *
34334 TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCCAAAAAAAAAATTTTAATGTCGTC
651 TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-CAAAAAAAAAAATTGAATGTCGTC
* * * * * *
34399 CTTTTACTTGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGAAAAAATGGTGTCTTATGTCT
715 CTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACAGACAAAATGGTGTCTTTTGTAT
*
34464 TTGCCCTATTCCTGATGCTCAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTCCG
780 TTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTCCG
* * *
34529 GGCTAATTTTTCGGTAACCTAAAGTATTACTAGATGGAAGGGTCGAAAGGTATGGGGATGAATTG
845 GGCTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGATGAATTG
* * *
34594 GTGGCACCTTCCAGTCCTCAAAGAGCAAGATATCTTTTTCTTTAAAAGCCCACACGAGTTGG
910 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
* * *
34656 TGGCACCTTTTAGTCCTGAAAGAGCAGGACGTCCTTTTCTTTTAAAGCCCATGCAAGTTGGTGGC
1 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
* *
34721 AGCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACTT
66 ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
*
34786 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGACGCACT
131 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACT
* * *
34851 TCATTTCATTCTTTTCTCTTTTGTACTCAAAGAGTAGGACGCACTTTATTTTCCTCTTTCTTTTG
196 TCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
* * * *
34916 TCCGCAAAGAGCATGACGCATTTCATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGATGCTCT
261 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTCT
*
34981 TCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGGCACATTTCGTTTTCCTTTTTTCCTT
326 TCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCCTT
* * *
35046 TGTCCTCGAAAAGCAGGACGTACTCTTTTTCACCTTGTCCTCAAGAAGTAGGACACTTTCCTTT-
391 TGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGCCCTCAAGAAGCAGGACACTTTCCTTTC
* * * *
35110 CTTTTTTCCTTTATCCTCAAGGAGCGAGACCTATTTCTTTCTCTTTTCCTTTGTCCTCAAAAAAT
456 CTTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGT
* *
35175 GGGACACCCCTTCCATTTATTTCCCGTCCTAAAGTCTGCATAAGTTGGTAGCACCCAAAAAGCCC
521 GGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCC
35240 ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
586 ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
35305 TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCGTCC
651 TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCGTCC
* * **
35370 TTTTACATGCATTTATCTAAGCATTCTTTTTTTTCCTTCACAGACAAAATGATGTCTTTTGTCCT
716 TTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACAGACAAAATGGTGTCTTTTGTATT
* * * * * *
35435 TGCCCTATTCTTGATACTCATAAACAGCCAAAGAGGGGCAGCTGTAGACACCTTATTTTGTTCGA
781 TGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTCCGG
35500 GCTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGATGAATTGG
846 GCTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGATGAATTGG
* *
35565 TGGCACCTTCCAGTCCTCAAAGAGCAGAACATCTTTTTTTTTCAAAGCCCACACGAGTTGG
911 TGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
* * *
35626 TGGTACCTTTTAGTCCTCAAAGAACAGGACATCTTTTTCTTTTAAAGCCCACGCA
1 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCA
35681 GGGAACATAG
Statistics
Matches: 2726, Mismatches: 219, Indels: 32
0.92 0.07 0.01
Matches are distributed among these distances:
958 215 0.08
959 231 0.08
960 179 0.07
965 3 0.00
968 174 0.06
969 252 0.09
970 544 0.20
971 510 0.19
972 618 0.23
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (971 bp):
TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGC
ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACT
TCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCTCT
TCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCCTT
TGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGCCCTCAAGAAGCAGGACACTTTCCTTTC
CTTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGT
GGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCC
ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCGTCC
TTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACAGACAAAATGGTGTCTTTTGTATT
TGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTCCGG
GCTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGATGAATTGG
TGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
Found at i:34694 original size:61 final size:60
Alignment explanation
Indices: 34591--34815 Score: 288
Period size: 61 Copynumber: 3.7 Consensus size: 60
34581 TGGGGATGAA
* * ** *
34591 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGATATCTTTTTCTTTAAAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-CGCCTTTTCTTTAAAAGCCCACACGAG
* * * ** *
34652 TTGGTGGCACCTTTTAGTCCTGAAAGAGCAGGACGTCCTTTTCTTTTAAAGCCCATGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTAAAAGCCCACACGAG
* *
34713 TTGGTGGCAGCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCATTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTC-TTTAAAAGCCCACACGAG
* *
34774 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTC
34816 CTCTTCCCTC
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
60 7 0.05
61 134 0.95
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (60 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTAAAAGCCCACACGAG
Found at i:34808 original size:122 final size:121
Alignment explanation
Indices: 34591--34815 Score: 344
Period size: 122 Copynumber: 1.9 Consensus size: 121
34581 TGGGGATGAA
* *
34591 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGATATCTTTTTCTTTAAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGATAGCCTTTTCTTTAAAAGCCCACACGAGTTGG
*
34656 TGGCACCTTTTAGTCCTGAAAGAGCAGGACGTCCTTTTCTTTTAAAGCCCATGCAAG
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTAAAGCCCATGCAAG
* * * * *
34713 TTGGTGGCAGCTTTCAGTCCTCAAAGAGCAGGA-CGCCTTTTCATTTCAAAGCCCACACGAGTTG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGATAGCCTTTTC-TTTAAAAGCCCACACGAGTTG
*
34777 GTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
65 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
34816 CTCTTCCCTC
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
121 13 0.14
122 80 0.86
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (121 bp):
TTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGATAGCCTTTTCTTTAAAAGCCCACACGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCATGCAAG
Found at i:34969 original size:43 final size:43
Alignment explanation
Indices: 34790--35065 Score: 243
Period size: 43 Copynumber: 6.4 Consensus size: 43
34780 GCACTTTTTA
*
34790 GTCCTCAAAGAGCAGGACGC----C-TTTTCCTCTTC-CCTCTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCT-TT
* * *
34828 GTCCTCAAAGAGCAGGACGCACTTCATTTCATTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTT--TCCTTTTCTCCTTT
* *
34873 GTACTCAAAGAGTAGGACGCACTTT-ATTTTCCTCTTTCT--TTT
1 GTCCTCAAAGAGCAGGACGCA-TTTCATTTTCCT-TTTCTCCTTT
* *
34915 GTCCGCAAAGAGCATGACGCATTTCATTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCTTT
* *
34958 GTCCTCAAAGAGCAGGATGC-TCTTCA-TTTCCTTCTTTTCCCTTCT
1 GTCCTCAAAGAGCAGGACGCAT-TTCATTTTCCTT-TTCT-CCTT-T
* * * *
35003 AGTCCTCAAAGAGCAGGGCACATTTCGTTTTCCTTTTTTCCTTT
1 -GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCTTT
35047 GTCCTCGAAA-AGCAGGACG
1 GTCCTC-AAAGAGCAGGACG
35066 TACTCTTTTT
Statistics
Matches: 196, Mismatches: 21, Indels: 37
0.77 0.08 0.15
Matches are distributed among these distances:
38 20 0.10
41 8 0.04
42 37 0.19
43 46 0.23
44 13 0.07
45 36 0.18
46 28 0.14
47 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCTCCTTT
Found at i:35038 original size:89 final size:88
Alignment explanation
Indices: 34790--35065 Score: 288
Period size: 89 Copynumber: 3.2 Consensus size: 88
34780 GCACTTTTTA
34790 GTCCTCAAAGAGCAGGACG--C--C-TTTTCCTC-TTCCC-TCTTGTCCTCAAAGAGCAGGACGC
1 GTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCCCTTCTTGTCCTCAAAGAGCAGGACGC
* * *
34848 ACTTCATTTCATTCTTTTCTCTTTT
66 ATTTCATTT--TCCTTTTCTCCTTT
* * * * *
34873 GTACTCAAAGAGTAGGACGCACTTTATTTTCCTCTTT--CTT-TTGTCCGCAAAGAGCATGACGC
1 GTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCCCTTCTTGTCCTCAAAGAGCAGGACGC
34935 ATTTCATTTTCCTTTTCTCCTTT
66 ATTTCATTTTCCTTTTCTCCTTT
* * * *
34958 GTCCTCAAAGAGCAGGATGCTCTTCA-TTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGGC
1 GTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TC-TTTCCCTTCTTGTCCTCAAAGAGCAGGAC
* * *
35022 ACATTTCGTTTTCCTTTTTTCCTTT
64 GCATTTCATTTTCCTTTTCTCCTTT
35047 GTCCTCGAAA-AGCAGGACG
1 GTCCTC-AAAGAGCAGGACG
35066 TACTCTTTTT
Statistics
Matches: 159, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
83 17 0.11
84 5 0.03
85 36 0.23
86 3 0.02
87 29 0.18
88 12 0.08
89 54 0.34
90 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (88 bp):
GTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCCCTTCTTGTCCTCAAAGAGCAGGACGC
ATTTCATTTTCCTTTTCTCCTTT
Found at i:35127 original size:40 final size:40
Alignment explanation
Indices: 35083--35169 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
35073 TTTCACCTTG
*
35083 TCCTCAAGAAGTAG-GACACT-TTCCTTTCTTTTTTCCTTTA
1 TCCTCAAGAAG-AGAGAC-CTATTCCTTTCTCTTTTCCTTTA
* * * *
35123 TCCTCAAGGAGCGAGACCTATTTCTTTCTCTTTTCCTTTG
1 TCCTCAAGAAGAGAGACCTATTCCTTTCTCTTTTCCTTTA
35163 TCCTCAA
1 TCCTCAA
35170 AAAATGGGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.18, C:0.28, G:0.11, T:0.43
Consensus pattern (40 bp):
TCCTCAAGAAGAGAGACCTATTCCTTTCTCTTTTCCTTTA
Found at i:35641 original size:61 final size:61
Alignment explanation
Indices: 35561--35677 Score: 173
Period size: 61 Copynumber: 1.9 Consensus size: 61
35551 TGGGGATGAA
*
35561 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGAACATCTTTTT-TTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAACAGAACATCTTTTTCTTTT-AAAGCCCACACGAG
* ** *
35622 TTGGTGGTACCTTTTAGTCCTCAAAGAACAGGACATCTTTTTCTTTTAAAGCCCAC
1 TTGGTGGCACCTTCCAGTCCTCAAAGAACAGAACATCTTTTTCTTTTAAAGCCCAC
35678 GCAGGGAACA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
61 46 0.92
62 4 0.08
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (61 bp):
TTGGTGGCACCTTCCAGTCCTCAAAGAACAGAACATCTTTTTCTTTTAAAGCCCACACGAG
Found at i:37105 original size:30 final size:28
Alignment explanation
Indices: 37071--37164 Score: 87
Period size: 30 Copynumber: 3.5 Consensus size: 28
37061 TTTTATCTAG
37071 ATGTATCGATACATCTGGGTATAAGATAGA
1 ATGTATCGATACATCTGGGTA-AAGA-AGA
37101 ATGTATCGATACAT-T--G---A-AA-A
1 ATGTATCGATACATCTGGGTAAAGAAGA
*
37121 ATGTATTGATACATCTGGGTAAAAGACAGA
1 ATGTATCGATACATCTGGGT-AAAGA-AGA
37151 ATGTATCGATACAT
1 ATGTATCGATACAT
37165 TGAAAAATGT
Statistics
Matches: 52, Mismatches: 2, Indels: 20
0.70 0.03 0.27
Matches are distributed among these distances:
20 14 0.27
21 2 0.04
22 1 0.02
23 2 0.04
27 2 0.04
28 1 0.02
29 2 0.04
30 28 0.54
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (28 bp):
ATGTATCGATACATCTGGGTAAAGAAGA
Found at i:37125 original size:20 final size:20
Alignment explanation
Indices: 37100--37184 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 20
37090 TATAAGATAG
37100 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
*
37120 AATGTATTGATACATCTGGGTAAAAGACA
1 AATGTATCGATACAT-T--G----A-A-A
37149 GAATGTATCGATACATTGAAA
1 -AATGTATCGATACATTGAAA
*
37170 AATGTATTGATACAT
1 AATGTATCGATACAT
37185 CTGGGTAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 20
0.69 0.04 0.27
Matches are distributed among these distances:
20 28 0.54
21 2 0.04
22 1 0.02
23 2 0.04
27 2 0.04
28 1 0.02
29 2 0.04
30 14 0.27
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:37152 original size:50 final size:50
Alignment explanation
Indices: 37071--37194 Score: 221
Period size: 50 Copynumber: 2.5 Consensus size: 50
37061 TTTTATCTAG
* * *
37071 ATGTATCGATACATCTGGGTATAAGATAGAATGTATCGATACATTGAAAA
1 ATGTATTGATACATCTGGGTAAAAGACAGAATGTATCGATACATTGAAAA
37121 ATGTATTGATACATCTGGGTAAAAGACAGAATGTATCGATACATTGAAAA
1 ATGTATTGATACATCTGGGTAAAAGACAGAATGTATCGATACATTGAAAA
37171 ATGTATTGATACATCTGGGTAAAA
1 ATGTATTGATACATCTGGGTAAAA
37195 ATGTGACTTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (50 bp):
ATGTATTGATACATCTGGGTAAAAGACAGAATGTATCGATACATTGAAAA
Found at i:37194 original size:24 final size:24
Alignment explanation
Indices: 37117--37198 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 24
37107 CGATACATTG
37117 AAAAATGTATTGATACATCTGGGT
1 AAAAATGTATTGATACATCTGGGT
*
37141 AAAAGACAGAATGTATCGATACAT-T--G-
1 ---A-A-A-AATGTATTGATACATCTGGGT
37167 AAAAATGTATTGATACATCTGGGT
1 AAAAATGTATTGATACATCTGGGT
37191 AAAAATGT
1 AAAAATGT
37199 GACTTTTTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
20 14 0.30
21 2 0.04
22 1 0.02
23 2 0.04
24 8 0.17
27 2 0.04
28 1 0.02
29 2 0.04
30 14 0.30
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAATGTATTGATACATCTGGGT
Found at i:38370 original size:28 final size:28
Alignment explanation
Indices: 38257--38765 Score: 610
Period size: 28 Copynumber: 17.9 Consensus size: 28
38247 AAAAGAAAGG
* *
38257 TGCCACTAACTTATGTGGACTTTGAAAAGA
1 TGCCACTAAC-T-TGTGGGCTTTGAAATGA
* *
38287 GTTGCCACTGACTTGTATGGGCTTT-AACAGGGTA
1 --TGCCACTAACTTG--TGGGCTTTGAA-A-TG-A
* * *
38321 TGCCATTAACTTGTGGGTTTTGAAATGG
1 TGCCACTAACTTGTGGGCTTTGAAATGA
* * * *
38349 TGCCACCAACTTATTGGCTTTGAAAGGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
* *
38377 TGCCAGTGACTTGTGGGCTTTGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
38405 TGCCACTAACTTGTGGGCTTTGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
*
38433 TGCCACTAACTTGTGGGCTTTGAAATGG
1 TGCCACTAACTTGTGGGCTTTGAAATGA
** *
38461 TAACACTAACTTATGGGCTTTGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
* * *
38489 TGCCACTGACTTGTGGGCTTCGAAATGG
1 TGCCACTAACTTGTGGGCTTTGAAATGA
* *
38517 TGCTACTAACTTGTGGGCTTCGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
* *
38545 TGCCACTGACTTATGGGCTTTGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
*
38573 TGCCACTGACTTGTGGGCTTT-AAAGTGA
1 TGCCACTAACTTGTGGGCTTTGAAA-TGA
**
38601 TGCCACTAACTTGTGGGCTTCAAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
*
38629 TGCCACTGACTTGTGGGCTTT-AAAGTGA
1 TGCCACTAACTTGTGGGCTTTGAAA-TGA
*
38657 TGCCACTAACTTGTGGGCTTTGAAATGG
1 TGCCACTAACTTGTGGGCTTTGAAATGA
* *
38685 TGCCACTGACTTATGGGCTTTGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
38713 TGCCACTAACTTGTGGGCTTTGAAATGA
1 TGCCACTAACTTGTGGGCTTTGAAATGA
*
38741 TGCCACTGACTTGTGGGCTTTGAAA
1 TGCCACTAACTTGTGGGCTTTGAAA
38766 GGGGTCGTAT
Statistics
Matches: 413, Mismatches: 54, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
27 6 0.01
28 355 0.86
29 7 0.02
30 10 0.02
31 5 0.01
32 28 0.07
33 1 0.00
34 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (28 bp):
TGCCACTAACTTGTGGGCTTTGAAATGA
Found at i:38804 original size:26 final size:26
Alignment explanation
Indices: 38775--38847 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
38765 AGGGGTCGTA
* *
38775 TTGACGAAAATTTCTTTACAAAGTTT
1 TTGACGAAAATTTCTTCACAAAGTTC
38801 TTGAC-AAACA-TTCTTCACAGAAGTTC
1 TTGACGAAA-ATTTCTTCACA-AAGTTC
* *
38827 TTGACGATAATTTCTTGACAA
1 TTGACGAAAATTTCTTCACAA
38848 CTATTTCTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 11 0.28
26 18 0.46
27 10 0.26
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37
Consensus pattern (26 bp):
TTGACGAAAATTTCTTCACAAAGTTC
Found at i:53680 original size:19 final size:19
Alignment explanation
Indices: 53656--53697 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
53646 TTGCGGAAGA
53656 AAGCCTTTCTTGAGAAACC
1 AAGCCTTTCTTGAGAAACC
*
53675 AAGCCTTTCTTGCGAAACC
1 AAGCCTTTCTTGAGAAACC
53694 AAGC
1 AAGC
53698 ATCAATATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (19 bp):
AAGCCTTTCTTGAGAAACC
Found at i:54443 original size:404 final size:404
Alignment explanation
Indices: 53678--54522 Score: 1121
Period size: 404 Copynumber: 2.1 Consensus size: 404
53668 AGAAACCAAG
* * * * *
53678 CCTTTCTTGCGAAACC-AAGCATCAATATCGTGTATCTATATTTAAGACATAAACTTTGATTCTA
1 CCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCATATTTAAGACACAAACTCTCATTCTA
*
53742 ACAAAAACGGTGGAAAGAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATA
66 ACAAAAACGGCGGAAAGAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATA
* * * *
53807 AAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTATTACGAGAATCGATGCTTA
131 AAAGGAATGTGTTTTAGGATCCCAATCCTGAAAAAAATGGAGACTATTACAAGAATCGATGATTA
* * * *
53872 TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCCAAAAAAAGATTTTCATGCAAAA
196 TCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCCAAAAAAAGATTTCCATACAAAA
* * * *
53937 GAAAATCATTAATATCACTTATCCTAAGGAAAAGATTATGTTTACATTGCCTAATCACAAAATGA
261 GAAAATCATCAATACCACTTATCCTAAGGAAAAGAATATGTTTACAGTGCCTAATCACAAAATGA
* * *
54002 ATGGAGATAAATACTAGAGTCCATATTTAGCTTATTTGTGGTAAGAACTTAGACTTTACAAAAAT
326 ATGGAGATAAATACTAGAATCCATATTTAGCTTATTTGAGGTAAGAACTCAGACTTTAC-AAAAT
*
54067 TT-GTGGGAAAAAAA
390 TTAGAGGGAAAAAAA
* *
54081 CCTTTCTTGCAAAACCAAAGCATCAATATTGTGTATCCATATTTAAGAGACAAACTCTCATTCTT
1 CCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCATATTTAAGACACAAACTCTCATTC-T
* * * *
54146 TA-AAAAATGGCGGAAAGAAAAGCTTTTCTTGCGAC-CCTAAAGCATCAATGTCATGTATCCTAA
65 AACAAAAACGGCGGAAAGAAAAGCTTCTCTTGCAACACC-AAAGCATCAATGTCATGTATCCTAA
* * * * *
54209 T-AAAGATAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGGAGATTGTTACAAGAATCGATGA
129 TAAAAG-GAATGTGTTTTAGGATCCCAATCCTGAAAAAAATGGAGACTATTACAAGAATCGATGA
* *
54273 TTTTCTTATTTAAGGGATGAGCTTTGATTTTAAGAAAAATAAGG-CAAAAAATAGATTTCCATAC
193 TTATCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCCAAAAAA-AGATTTCCATAC
* ** * * *
54337 AAAAGAAAATCATCAATACCA-TTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAG
257 AAAAGAAAATCATCAATACCACTT-ATCCTAAGGAAAAGAATATGTTTACAGTGCCTAATCACAA
* * * * *
54401 AATGAAT-GATGATCATTACTAGAATCCATGTTTGGCTTATTTGAGGTAGGAACTCAGACTTTAC
321 AATGAATGGA-GATAAATACTAGAATCCATATTTAGCTTATTTGAGGTAAGAACTCAGACTTTAC
*
54465 AAAATTTAGAGGGAAAAAAG
385 AAAATTTAGAGGGAAAAAAA
* * *
54485 CCTTTTTTGCGAAACCAGAGCTTCAATATTGTGTATCC
1 CCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCC
54523 TTTTGAGAAA
Statistics
Matches: 383, Mismatches: 51, Indels: 15
0.85 0.11 0.03
Matches are distributed among these distances:
403 39 0.10
404 342 0.89
405 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (404 bp):
CCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCATATTTAAGACACAAACTCTCATTCTA
ACAAAAACGGCGGAAAGAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATA
AAAGGAATGTGTTTTAGGATCCCAATCCTGAAAAAAATGGAGACTATTACAAGAATCGATGATTA
TCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCCAAAAAAAGATTTCCATACAAAA
GAAAATCATCAATACCACTTATCCTAAGGAAAAGAATATGTTTACAGTGCCTAATCACAAAATGA
ATGGAGATAAATACTAGAATCCATATTTAGCTTATTTGAGGTAAGAACTCAGACTTTACAAAATT
TAGAGGGAAAAAAA
Found at i:55017 original size:476 final size:471
Alignment explanation
Indices: 54159--55576 Score: 1620
Period size: 476 Copynumber: 3.0 Consensus size: 471
54149 AAAATGGCGG
**
54159 AAAGAAAAGCTTTTCTTGCG-ACCCTAAAGCATCAATGTCATGTATCCTAATAAAGATAATGTGT
1 AAAGAAAAGCTTTTCTTGCGCA-CC-AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGT
* * * * *
54223 TTTTGGATCCCAATCTTGAAAAAAATGGAGATTGTTACAAGAATCGATGATTTTCTTATTTAAGG
64 TTTTGGTTCCTAATCTTGAAAAAAATGG-GACTGTTACAAGAATCGATGATTGTCTTATTTAAAG
* * *
54288 GATGAGCTTTGATTTTAAGAAAAATAAGGCAAAAAATAGATTTCCATACAAAAGAAAATCATCAA
128 GATGAACTTTGATTTTAAGAAAAAT-GGGCAAAAAA-AGATTTCCATGCAAAAGAAAATCATCAA
* *
54353 -TACCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAGAA-TGAATGATGATCA
191 TTAAC-TTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA-AACTGAATGAAGATCA
* * * * *
54416 TTACTAGAATCCATGTTTGGCTTATTTGAGGTAGGAACTCAGACTTTAC-AAAATTTAGAGGGAA
254 TTACTAGAATCCATGTTTGGCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTTATA-GGAA
* * * * * *
54480 AAAAGCCTTTTTTGCGAAACCAGAGCTTCAATATTGTGTATCCTTTTGAGAAAATTATGTTTATG
318 AAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * *
54545 GTGCCTAATCTCGAAAATAATGAGGATTAGTATGACTATTCATATTTGTCTTATTTAATAGACAA
383 GTGCCTAATC-CAAAAATAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
*
54610 ACTTTGATTATATCAAAAACGGTAA
447 ACTTTGATTATATCAAAAACGATAA
** * *
54635 AAAGAAAAGCTTTTCTTGCAGCACCAAAGCATCAATGTTGTATATCCTAATAAAGGGAATGTTTT
1 AAAGAAAAGCTTTTCTTGC-GCACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTT
* *
54700 TTTGGTTCCTAATCTTGAAAAAAATGAGGACTGTTACAAGAATCAATGCTTGTCTTATTTAAAGG
65 TTTGGTTCCTAATCTTGAAAAAAATG-GGACTGTTACAAGAATCGATGATTGTCTTATTTAAAGG
* * * *
54765 ATGAACTTTGAGTTCAAGGAAAATGGTGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
129 ATGAACTTTGATTTTAAGAAAAATGG-GCAAA-AAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * ** *
54830 GTAACTT-ATCCTATTCAAAAGAATGTGTTTATAGTGCTTAATCACAAACTGAATGAAGATCATT
192 -TAACTTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAACTGAATGAAGATCATT
* * * * * **
54894 CCTAAAATCCATGTTTGTCTCATTT-ATGGAATGAACTTAAACTTTACAAAAATTTATACAAAAA
256 ACTAGAATCCATGTTTGGCTCATTTGA-GGAACGAACTTAGACTTTACAAAAATTTATAGGAAAA
* * * * * *
54958 AAACCTTTCTTGCGAAACTAAAGCATCAAAATCATGTATCCTTATGAGAAGACTATGTTTAGGGT
320 AAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * * *
55023 GCCAAATCCTAAAATCAATGGGGATTAGTATGAGTGAATCATGTTTGCCTTATTTAAGAGACAAA
385 GCCTAATCCAAAAAT-AATGAGGATTAGTATGACT-ATTCATGTTTGTCTTATTTAAGAGACAAA
* **
55088 CTTTGATTCTATCAAAAACGATGG
448 CTTTGATTATATCAAAAACGATAA
* * * * * * *
55112 AAAGAAAAGCTTTTCTTGTGACACCAAAGCGTCATTGCCACGTATCCTAATGAAGGGAAAGTGTT
1 AAAGAAAAGCTTTTCTTGCG-CACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTT
* * * * * *
55177 TTAGGTTCCTAATCTTGAAAAGAACGGGACTATTCCGAGAATCGAT-ATTTGTCTTATTTAAAGG
65 TTTGGTTCCTAATCTTGAAAAAAATGGGACTGTTACAAGAATCGATGA-TTGTCTTATTTAAAGG
55241 ATGAACTTTGATTTTAAGAAAAATTGGGCAAAAAAA-A-TTCCATGCAAAA-AAAATCATCAA-T
129 ATGAACTTTGATTTTAAGAAAAA-TGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATT
* ** *
55302 ATCATTAATTTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAC-GAATGAAGATCAAT
193 AAC-TTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAACTGAATGAAGATCATT
* * * ** * *
55366 ACTAGAATCCATGTTTGGCTCGTTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAA
256 ACTAGAATCCATGTTTGGCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTTATAGGAAAAA
* * * *
55431 AGCCTTTCTTGCGAAGCCAAAGCTTCAATATCGTGTATCTTTATGAGAAGACTACGTTTGTGGTG
321 AGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTG
* * * ** **
55496 CCTAATCCCAAAAAGAAT-AGGGATTTGTATGACTATTCATGTTTATCTTATTTGTGAGGTAAAC
386 CCTAAT-CCAAAAATAATGA-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* *
55560 TTTGATTCTATTAAAAA
449 TTTGATTATATCAAAAA
55577 TAGTGTATCG
Statistics
Matches: 789, Mismatches: 132, Indels: 47
0.82 0.14 0.05
Matches are distributed among these distances:
470 3 0.00
471 41 0.05
472 179 0.23
473 22 0.03
474 1 0.00
475 14 0.02
476 384 0.49
477 141 0.18
478 4 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (471 bp):
AAAGAAAAGCTTTTCTTGCGCACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTT
TTGGTTCCTAATCTTGAAAAAAATGGGACTGTTACAAGAATCGATGATTGTCTTATTTAAAGGAT
GAACTTTGATTTTAAGAAAAATGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATTAAC
TTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAACTGAATGAAGATCATTACTAG
AATCCATGTTTGGCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTTATAGGAAAAAAGCCT
TTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
TCCAAAAATAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
ATATCAAAAACGATAA
Found at i:58819 original size:20 final size:20
Alignment explanation
Indices: 58794--58868 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
58784 TTTTACCCAG
58794 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
58814 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
**
58834 ATGTATTAATACATTTTTCA
1 ATGTATCGATACATTTTTCA
*
58854 ATGTACCGATACATT
1 ATGTATCGATACATT
58869 CTATTTTGTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:69637 original size:20 final size:20
Alignment explanation
Indices: 69612--69688 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
69602 TAAAAAAGAC
*
69612 AAAATGTATCGATACATTGA
1 AAAATGTATCAATACATTGA
* *
69632 AAAATGTATCGATACATTCA
1 AAAATGTATCAATACATTGA
* *
69652 TACATGTATCAATACATTGA
1 AAAATGTATCAATACATTGA
*
69672 AAAATTTATCAATACAT
1 AAAATGTATCAATACAT
69689 CTGGGTAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.32
Consensus pattern (20 bp):
AAAATGTATCAATACATTGA
Found at i:69670 original size:40 final size:40
Alignment explanation
Indices: 69615--69759 Score: 139
Period size: 40 Copynumber: 3.9 Consensus size: 40
69605 AAAAGACAAA
* *
69615 ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
1 ATGTATCAATACATTGAAAAATGTATCAATACATTCATAC
*
69655 ATGTATCAATACATTGAAAAATTTATCAATACA-TC-T--
1 ATGTATCAATACATTGAAAAATGTATCAATACATTCATAC
** *
69691 GGGTA--AA-A-A--GACAAAATGTATCAACACATTCATAC
1 ATGTATCAATACATTGA-AAAATGTATCAATACATTCATAC
* *
69726 ATGTATCGATACATTGAAAAATGTATCGATACAT
1 ATGTATCAATACATTGAAAAATGTATCAATACAT
69760 CTGGGTAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
30 2 0.02
31 14 0.17
32 3 0.04
33 2 0.02
34 2 0.02
35 3 0.04
36 3 0.04
37 1 0.01
38 2 0.02
39 3 0.04
40 45 0.55
41 2 0.02
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.30
Consensus pattern (40 bp):
ATGTATCAATACATTGAAAAATGTATCAATACATTCATAC
Found at i:69721 original size:71 final size:71
Alignment explanation
Indices: 69632--69770 Score: 233
Period size: 71 Copynumber: 2.0 Consensus size: 71
69622 GATACATTGA
* * *
69632 AAAATGTATCGATACATTCATACATGTATCAATACATTGAAAAATTTATCAATACATCTGGGTAA
1 AAAATGTATCAACACATTCATACATGTATCAATACATTGAAAAATGTATCAATACATCTGGGTAA
69697 AAAGAC
66 AAAGAC
* *
69703 AAAATGTATCAACACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
1 AAAATGTATCAACACATTCATACATGTATCAATACATTGAAAAATGTATCAATACATCTGGGTAA
69768 AAA
66 AAA
69771 TGTGACTTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (71 bp):
AAAATGTATCAACACATTCATACATGTATCAATACATTGAAAAATGTATCAATACATCTGGGTAA
AAAGAC
Found at i:69732 original size:91 final size:92
Alignment explanation
Indices: 69586--69759 Score: 242
Period size: 91 Copynumber: 1.9 Consensus size: 92
69576 TTATTCAATG
* * * *
69586 TATCGATACATCTGCGTAAAAAAGACAAAATGTATCGATACATTGAAAAATGTATCGATACATTC
1 TATCAATACATCTGCGTAAAAAAGACAAAATGTATCAACACATTCAAAAATGTATCGATACATTC
* *
69651 ATACATGTATCAATACATTGAAAAATT
66 AAAAATGTATCAATACATTGAAAAATT
* * * *
69678 TATCAATACATCTGGGT-AAAAAGACAAAATGTATCAACACATTCATACATGTATCGATACATTG
1 TATCAATACATCTGCGTAAAAAAGACAAAATGTATCAACACATTCAAAAATGTATCGATACATTC
*
69742 AAAAATGTATCGATACAT
66 AAAAATGTATCAATACAT
69760 CTGGGTAAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
91 56 0.79
92 15 0.21
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (92 bp):
TATCAATACATCTGCGTAAAAAAGACAAAATGTATCAACACATTCAAAAATGTATCGATACATTC
AAAAATGTATCAATACATTGAAAAATT
Found at i:69739 original size:20 final size:20
Alignment explanation
Indices: 69703--69759 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
69693 GTAAAAAGAC
* *
69703 AAAATGTATCAACACATTCA
1 AAAATGTATCGATACATTCA
* * *
69723 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTCA
69743 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
69760 CTGGGTAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.30
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:71833 original size:32 final size:32
Alignment explanation
Indices: 71796--71870 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
71786 ATATTGCTTT
*
71796 GTATCGATACTCTATATCGATACATGATATTG
1 GTATCGATACACTATATCGATACATGATATTG
* * *
71828 GTATCGATACACTGTATCGATATATGATCTTG
1 GTATCGATACACTATATCGATACATGATATTG
*
71860 GTATCAATACA
1 GTATCGATACA
71871 TAGTGAATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (32 bp):
GTATCGATACACTATATCGATACATGATATTG
Found at i:72178 original size:22 final size:22
Alignment explanation
Indices: 72152--72223 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
72142 TCAATGGAAG
*
72152 TTTTAAACTTATAA-ACAAATGT
1 TTTTAAACTT-TAATTCAAATGT
72174 TTTTAAACTTTAATTCAAATGT
1 TTTTAAACTTTAATTCAAATGT
72196 TTTTAAACTTTAATTCAAATGT
1 TTTTAAACTTTAATTCAAATGT
72218 TTTTAA
1 TTTTAA
72224 GTAAAAAATA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
21 3 0.06
22 45 0.94
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTTAAACTTTAATTCAAATGT
Found at i:72369 original size:13 final size:13
Alignment explanation
Indices: 72351--72375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72341 CATTATGTTT
72351 TGTATCGATACAA
1 TGTATCGATACAA
72364 TGTATCGATACA
1 TGTATCGATACA
72376 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:72459 original size:13 final size:13
Alignment explanation
Indices: 72441--72493 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
72431 CGATACATGG
72441 TACATTGTATCGA
1 TACATTGTATCGA
72454 TACATTGTATCGA
1 TACATTGTATCGA
72467 TACA-TG-AT-G-
1 TACATTGTATCGA
72476 -A-ATTGTATCGA
1 TACATTGTATCGA
72487 TACATTG
1 TACATTG
72494 CTTCTAACGC
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 21 0.62
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:72471 original size:33 final size:33
Alignment explanation
Indices: 72429--72493 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
72419 CACTGTTTGC
*
72429 ATCGATACATGGT-ACATTGTATCGATACATTGT
1 ATCGATACATGATGA-ATTGTATCGATACATTGT
72462 ATCGATACATGATGAATTGTATCGATACATTG
1 ATCGATACATGATGAATTGTATCGATACATTG
72494 CTTCTAACGC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (33 bp):
ATCGATACATGATGAATTGTATCGATACATTGT
Found at i:76576 original size:119 final size:119
Alignment explanation
Indices: 76352--76605 Score: 492
Period size: 119 Copynumber: 2.1 Consensus size: 119
76342 TAAAAGTGAT
*
76352 GAAGGTAT-TTTTTTTGTTATTCAACAAATTCTAAAGCTTATCGAGTGTCTAACAAAAGAACTTT
1 GAAGGTATCTTTTGTTGTTATTCAACAAATTCTAAAGCTTATCGAGTGTCTAACAAAAGAACTTT
76416 AGTAGTTGAAGAATCGATCCACGTCATTTTTGATGATTCTAACTCCTCCGAAAG
66 AGTAGTTGAAGAATCGATCCACGTCATTTTTGATGATTCTAACTCCTCCGAAAG
76470 GAAGGTATCTTTTGTTGTTATTCAACAAATTCTAAAGCTTATCGAGTGTCTAACAAAAGAACTTT
1 GAAGGTATCTTTTGTTGTTATTCAACAAATTCTAAAGCTTATCGAGTGTCTAACAAAAGAACTTT
76535 AGTAGTTGAAGAATCGATCCACGTCATTTTTGATGATTCTAACTCCTCCGAAAG
66 AGTAGTTGAAGAATCGATCCACGTCATTTTTGATGATTCTAACTCCTCCGAAAG
76589 GAAGGTATCTTTTGTTG
1 GAAGGTATCTTTTGTTG
76606 ACAATGATGT
Statistics
Matches: 134, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
118 8 0.06
119 126 0.94
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (119 bp):
GAAGGTATCTTTTGTTGTTATTCAACAAATTCTAAAGCTTATCGAGTGTCTAACAAAAGAACTTT
AGTAGTTGAAGAATCGATCCACGTCATTTTTGATGATTCTAACTCCTCCGAAAG
Found at i:78976 original size:20 final size:21
Alignment explanation
Indices: 78943--78981 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
78933 TACAAATTTC
78943 TTCATTTTTACTTCAAAATAG
1 TTCATTTTTACTTCAAAATAG
78964 TTCATTTTT-CTTCAAAAT
1 TTCATTTTTACTTCAAAAT
78982 CACCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.31, C:0.15, G:0.03, T:0.51
Consensus pattern (21 bp):
TTCATTTTTACTTCAAAATAG
Found at i:81341 original size:19 final size:19
Alignment explanation
Indices: 81317--81370 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
81307 ATCGATCCAA
* *
81317 TGTATCGATACATGTTCAT
1 TGTATCGATACATGATAAT
*
81336 TGTATCGATACGTGGATAAT
1 TGTATCGATACAT-GATAAT
81356 TGTATCGATACATGA
1 TGTATCGATACATGA
81371 AACTGGCAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATGATAAT
Found at i:86243 original size:2 final size:2
Alignment explanation
Indices: 86236--86260 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86226 CATTTTCTTT
86236 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
86261 TAATGTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86442 original size:40 final size:40
Alignment explanation
Indices: 86387--86464 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
86377 TCGCTACATT
86387 AGGACCATTATAGTTACGACCGCCATTCACCGGGGCTTCG
1 AGGACCATTATAGTTACGACCGCCATTCACCGGGGCTTCG
* *
86427 AGGACCATTATAGTTATGACCGCCGTTCACCGGGGCTT
1 AGGACCATTATAGTTACGACCGCCATTCACCGGGGCTT
86465 TGATCGTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (40 bp):
AGGACCATTATAGTTACGACCGCCATTCACCGGGGCTTCG
Found at i:86689 original size:11 final size:12
Alignment explanation
Indices: 86659--86704 Score: 53
Period size: 11 Copynumber: 3.9 Consensus size: 12
86649 GTCCATCATT
86659 TTAATATA-ATC
1 TTAATATATATC
86670 TATATATATATAT-
1 T-TA-ATATATATC
86683 TTAATATA-ATC
1 TTAATATATATC
86694 TTAATATATAT
1 TTAATATATAT
86705 AAGACATCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
10 2 0.07
11 14 0.47
12 6 0.20
13 6 0.20
14 2 0.07
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAATATATATC
Found at i:86689 original size:24 final size:24
Alignment explanation
Indices: 86658--86705 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
86648 TGTCCATCAT
86658 TTTAATATAATC-TATATATATATA
1 TTTAATATAATCTTA-ATATATATA
86682 TTTAATATAATCTTAATATATATA
1 TTTAATATAATCTTAATATATATA
86706 AGACATCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTAATATAATCTTAATATATATA
Found at i:88481 original size:20 final size:21
Alignment explanation
Indices: 88440--88488 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
88430 ACAACAAGGT
88440 AATGTATCAATACATAAGTG-
1 AATGTATCAATACATAAGTGA
***
88460 AATGTATCAATACATGCTTGA
1 AATGTATCAATACATAAGTGA
88481 AATGTATC
1 AATGTATC
88489 GATATAGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (21 bp):
AATGTATCAATACATAAGTGA
Found at i:88608 original size:52 final size:52
Alignment explanation
Indices: 88530--88662 Score: 185
Period size: 52 Copynumber: 2.6 Consensus size: 52
88520 TCTAGAAAGA
*
88530 AAATGTATCGATACATTTTTCATTGTATCGATACATTATGGGTTTTTGACCC
1 AAATGTATCGATACATTTTTCATTGTATCGATACATTATGAGTTTTTGACCC
* * ** *
88582 AAATGTATCGATACATTTTTTATTGTATCGTTGTATTCTGAGTTTTTGACCC
1 AAATGTATCGATACATTTTTCATTGTATCGATACATTATGAGTTTTTGACCC
* * *
88634 AAATATATCGATACATTCTTCAATGTATC
1 AAATGTATCGATACATTTTTCATTGTATC
88663 AACACATCTA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (52 bp):
AAATGTATCGATACATTTTTCATTGTATCGATACATTATGAGTTTTTGACCC
Found at i:91168 original size:15 final size:16
Alignment explanation
Indices: 91139--91180 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
91129 AAAAAAAGTT
91139 AAAAGCAAAAGCACAAAA
1 AAAAGC-AAA-CACAAAA
91157 AAAA-CAAACACAAAA
1 AAAAGCAAACACAAAA
91172 AAAAGCAAA
1 AAAAGCAAA
91181 GGAAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.48
16 7 0.30
17 1 0.04
18 4 0.17
ACGTcount: A:0.76, C:0.17, G:0.07, T:0.00
Consensus pattern (16 bp):
AAAAGCAAACACAAAA
Found at i:92662 original size:61 final size:61
Alignment explanation
Indices: 92584--93275 Score: 275
Period size: 63 Copynumber: 11.4 Consensus size: 61
92574 TTTAAATTCT
* **
92584 ACAACTCTGTGGCACCCTTCTCAAAGTCCACAACTCCATGGTACCCTTTTTTAAAAAGTCC
1 ACAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTTAAAAAGTCC
* * * * * *
92645 AAAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCTGTGGCACTCTTTTCTAAAAAAAATGC
1 ACAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCTGTGGTACCCTTTT-T-TAAAAAGTCC
** * *
92708 ACAACTCCATGGCACCCTTCTCAAACTCTACAACTCTGTGGTAACCTTTTTT-AAAAGTCC
1 ACAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTTAAAAAGTCC
* * * * ** * *
92768 ACAACT-TAGTGGCACCTTTTTTTAAAAAGTCTGCAACT-TAGTGACACCC--TTAT-CAAAGTC
1 ACAACTCT-GTGGCACC--CTTCT-CAAAGTCTACAACTCT-GTGGTACCCTTTTTTAAAAAGTC
*
92828 T
61 C
* ** * * * ** * *
92829 ACGACTCAATGGCATCCCTT-TTAAAGTCCAAAACTCTGTGACACCC--TTTT--AAGGTCT
1 ACAACTCTGTGGCA-CCCTTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTTAAAAAGTCC
* * * * *
92886 ATAACT-TCGTGGTACCCCTTTTTAAAAGTCTACAACTCTGTGGCACCCTTTTTTAAAAAAAGTC
1 ACAACTCT-GTGGCA-CCC-TTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTT--AAAAAGTC
92950 C
61 C
* * * * * * * * *
92951 ACAAGTCTGTGGCACCATTATTATAGTCCACAACT-TCGTGGCACCC--TTGT-CAAAGTCC
1 ACAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCT-GTGGTACCCTTTTTTAAAAAGTCC
* * * * * * ** *
93009 ATAACTCCGTGGCATCCTTTTTCAAAAATCCACAACTCAATGGTACCCTTGTTTAAAAAAGTCC
1 ACAACTCTGTGGCA-CCCTTCTC-AAAGTCTACAACTCTGTGGTACCCTT-TTTTAAAAAGTCC
* * * * * * * * *
93073 ACAACT-TAGTGGCACCCTTTTCAAGGTCCATAACT-TAATGGCATCCTTTCTT--GAAGTCC
1 ACAACTCT-GTGGCACCCTTCTCAAAGTCTACAACTCT-GTGGTACCCTTTTTTAAAAAGTCC
* *** * * * * *
93132 CCAACTCCACGGCACCCTTTTTAAAGTCCACAACTCCGTGGCA-CCTTTTTT--AAAGTCC
1 ACAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTTAAAAAGTCC
* * * * * * *
93190 ACAACTCCGTGGCACCCTTTTCTAAAAGTCCACAACTCAGTGGTACCC--TTCT-CAAAGTCT
1 ACAACTCTGTGGCACCC--TTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTTAAAAAGTCC
* *
93250 ACGACTCAGTGGCACCCTTCTCAAAG
1 ACAACTCTGTGGCACCCTTCTCAAAG
93276 CCCATGACTT
Statistics
Matches: 482, Mismatches: 113, Indels: 75
0.72 0.17 0.11
Matches are distributed among these distances:
57 17 0.04
58 77 0.16
59 70 0.15
60 82 0.17
61 74 0.15
62 28 0.06
63 99 0.21
64 20 0.04
65 14 0.03
66 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (61 bp):
ACAACTCTGTGGCACCCTTCTCAAAGTCTACAACTCTGTGGTACCCTTTTTTAAAAAGTCC
Found at i:93262 original size:89 final size:88
Alignment explanation
Indices: 92584--93439 Score: 507
Period size: 89 Copynumber: 9.5 Consensus size: 88
92574 TTTAAATTCT
* * * * * *
92584 ACAACTCTGTGGCACCCTTCTCAAAGTCCACAACTCCA-TGGTACCCTTTTTTAAAAAGTCCAAA
1 ACAACTCAGTGGCACCCTTTTTAAAGTCCACAACT-CAGTGGCACCC--TTTT-CAAAGTCCACA
* * * *
92648 ACTCTGTGGCACCC-TTCTCAAAGTCT
62 ACTCCGTGGCACCCTTTTTAAAAGTCC
* * * * * * *
92674 ACAACTCTGTGGCACTCTTTTCTAAAAAAAATGCACAACTCCA-TGGCACCCTTCTCAAACTCTA
1 ACAACTCAGTGGCACCCTTTT-T----AAAGTCCACAACT-CAGTGGCACCCTTTTCAAAGTCCA
* * *
92738 CAACTCTGTGGTAACCTTTTTTAAAAGTCC
60 CAACTCCGTGG-CACCCTTTTTAAAAGTCC
* * ** * * * * *
92768 ACAACTTAGTGGCACCTTTTTTTAAAAAGTCTGCAACTTAGTGACACCCTTATCAAAGTCTACGA
1 ACAACTCAGTGGCACC-CTTTTT--AAAGTCCACAACTCAGTGGCACCCTTTTCAAAGTCCACAA
**
92833 CTCAATGGCATCCC-TTTT-AAAGTCC
63 CTCCGTGGCA-CCCTTTTTAAAAGTCC
* * * * * * * * *
92858 AAAACTCTGTGACACCC-TTTTAAGGTCTATAACTTC-GTGGTACCCCTTTTTAAAAGTCTACAA
1 ACAACTCAGTGGCACCCTTTTTAAAGTCCACAAC-TCAGTGGCA-CCC-TTTTCAAAGTCCACAA
*
92921 CTCTGTGGCACCCTTTTTTAAAAAAAGTCC
63 CTCCGTGGCACCC-TTTTT---AAAAGTCC
* * * * * * *
92951 ACAAGTCTGTGGCACCATTATTATAGTCCACAACTTC-GTGGCACCCTTGTCAAAGTCCATAACT
1 ACAACTCAGTGGCACCCTTTTTAAAGTCCACAAC-TCAGTGGCACCCTTTTCAAAGTCCACAACT
* *
93015 CCGTGGCATCCTTTTTCAAAAATCC
65 CCGTGGCACCCTTTTT-AAAAGTCC
* * * * *
93040 ACAACTCAATGGTACCCTTGTTTAAAAAAGTCCACAACTTAGTGGCACCCTTTTCAAGGTCCATA
1 ACAACTCAGTGGCACCCTT-TTT---AAAGTCCACAACTCAGTGGCACCCTTTTCAAAGTCCACA
*** * *
93105 ACTTAATGGCATCCTTTCTT-GAAGTCC
62 ACTCCGTGGCACCCTTT-TTAAAAGTCC
* * * * *
93132 CCAACTCCA-CGGCACCCTTTTTAAAGTCCACAACTCCGTGGCACCTTTTTTAAAGTCCACAACT
1 ACAACT-CAGTGGCACCCTTTTTAAAGTCCACAACTCAGTGGCACCCTTTTCAAAGTCCACAACT
93196 CCGTGGCACCCTTTTCTAAAAGTCC
65 CCGTGGCACCCTTTT-TAAAAGTCC
* * * * * * * ** *
93221 ACAACTCAGTGGTACCCTTCTCAAAGTCTACGACTCAGTGGCACCCTTCTCAAAGCCCATGACTT
1 ACAACTCAGTGGCACCCTTTTTAAAGTCCACAACTCAGTGGCACCCTTTTCAAAGTCCACAACTC
* * *
93286 AGTGGCATCCTTTTT-AAATTCC
66 CGTGGCACCCTTTTTAAAAGTCC
* * * * * *
93308 ATAACTCCGTGACACCC-TTTTAAAGTCCACAATTCCA-TGGCACCCCTTTTTAAAGTCTACAAC
1 ACAACTCAGTGGCACCCTTTTTAAAGTCCACAACT-CAGTGGCA-CCCTTTTCAAAGTCCACAAC
* *
93371 TCCATGGCACCCTTTTTTAAAGTCC
64 TCCGTGGCACCCTTTTTAAAAGTCC
* * *
93396 ATAACTCCGTGGCACCCTTTTCAAAGTCCACAACTCCA-TGGCAC
1 ACAACTCAGTGGCACCCTTTTTAAAGTCCACAACT-CAGTGGCAC
93440 TCTCTTTTAA
Statistics
Matches: 595, Mismatches: 137, Indels: 70
0.74 0.17 0.09
Matches are distributed among these distances:
86 30 0.05
87 56 0.09
88 98 0.16
89 113 0.19
90 40 0.07
91 14 0.02
92 97 0.16
93 78 0.13
94 44 0.07
95 25 0.04
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (88 bp):
ACAACTCAGTGGCACCCTTTTTAAAGTCCACAACTCAGTGGCACCCTTTTCAAAGTCCACAACTC
CGTGGCACCCTTTTTAAAAGTCC
Found at i:93432 original size:29 final size:29
Alignment explanation
Indices: 92571--93439 Score: 479
Period size: 29 Copynumber: 29.0 Consensus size: 29
92561 AGTCGAATAA
* * *
92571 CCTTTT-AAATTCTACAACTCTGTGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* * *
92599 CCTTCTCAAAGTCCACAACTCCATGGTAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* * *
92628 CCTTTTTTAAAAAGTCCAAAACTCTGTGGCAC
1 CC--TTTT-CAAAGTCCACAACTCCGTGGCAC
* * *
92660 CCTTCTCAAAGTCTACAACTCTGTGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* * * *
92689 TCTTTTCTAAAAAAAATGCACAACTCCATGGCAC
1 CCTTTTC-----AAAGTCCACAACTCCGTGGCAC
* * * * *
92723 CCTTCTCAAACTCTACAACTCTGTGGTAAC
1 CCTTTTCAAAGTCCACAACTCCGTGG-CAC
* * **
92753 CTTTTTTAAAAGTCCACAACTTAGTGGCAC
1 C-CTTTTCAAAGTCCACAACTCCGTGGCAC
* * ** ** *
92783 CTTTTTTTAAAAAGTCTGCAACTTAGTGACAC
1 C--CTTTT-CAAAGTCCACAACTCCGTGGCAC
* * * **
92815 CCTTATCAAAGTCTACGACTCAATGGCATC
1 CCTTTTCAAAGTCCACAACTCCGTGGCA-C
* * *
92845 CCTTTT-AAAGTCCAAAACTCTGTGACAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* * * * *
92873 CCTTTT-AAGGTCTATAACTTCGTGGTACC
1 CCTTTTCAAAGTCCACAACTCCGTGGCA-C
* * *
92902 CCTTTTTAAAAGTCTACAACTCTGTGGCAC
1 CC-TTTTCAAAGTCCACAACTCCGTGGCAC
* * *
92932 CCTTTTTTAAAAAAAGTCCACAAGTCTGTGGCAC
1 CC--TTTT---CAAAGTCCACAACTCCGTGGCAC
* * *
92966 CATTATT-ATAGTCCACAACTTCGTGGCAC
1 CCTT-TTCAAAGTCCACAACTCCGTGGCAC
* *
92995 CCTTGTCAAAGTCCATAACTCCGTGGCATC
1 CCTTTTCAAAGTCCACAACTCCGTGGCA-C
* * ** *
93025 CTTTTTCAAAAATCCACAACTCAATGGTAC
1 CCTTTTC-AAAGTCCACAACTCCGTGGCAC
* **
93055 CCTTGTTTAAAAAAGTCCACAACTTAGTGGCAC
1 CC-T-TTT--CAAAGTCCACAACTCCGTGGCAC
* * *** *
93088 CCTTTTCAAGGTCCATAACTTAATGGCAT
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
** * **
93117 CCTTTCTTGAAGTCCCCAACTCCACGGCAC
1 CCTTT-TCAAAGTCCACAACTCCGTGGCAC
*
93147 CCTTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* *
93176 CTTTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* *
93205 CCTTTTCTAAAAGTCCACAACTCAGTGGTAC
1 CCTTTTC--AAAGTCCACAACTCCGTGGCAC
* * * *
93236 CCTTCTCAAAGTCTACGACTCAGTGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* * ** ** *
93265 CCTTCTCAAAGCCCATGACTTAGTGGCAT
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* * * *
93294 CCTTTTTAAATTCCATAACTCCGTGACAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* *
93323 CCTTTT-AAAGTCCACAATTCCATGGCACC
1 CCTTTTCAAAGTCCACAACTCCGTGGCA-C
* * *
93352 CCTTTTTAAAGTCTACAACTCCATGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
* *
93381 CCTTTTTTAAAGTCCATAACTCCGTGGCAC
1 CC-TTTTCAAAGTCCACAACTCCGTGGCAC
*
93411 CCTTTTCAAAGTCCACAACTCCATGGCAC
1 CCTTTTCAAAGTCCACAACTCCGTGGCAC
93440 TCTCTTTTAA
Statistics
Matches: 658, Mismatches: 148, Indels: 69
0.75 0.17 0.08
Matches are distributed among these distances:
28 43 0.07
29 310 0.47
30 98 0.15
31 94 0.14
32 47 0.07
33 22 0.03
34 44 0.07
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
CCTTTTCAAAGTCCACAACTCCGTGGCAC
Found at i:93558 original size:33 final size:33
Alignment explanation
Indices: 93508--93678 Score: 120
Period size: 33 Copynumber: 5.3 Consensus size: 33
93498 ATGGCAACCC
*
93508 TTTCAAAGCCCACACAAGTTAGTGACAACTCTT
1 TTTCAAAGCCCATACAAGTTAGTGACAACTCTT
* *
93541 TTTCAAAACCCATACAAGTTGGT-AGCAAC-CTCT
1 TTTCAAAGCCCATACAAGTTAGTGA-CAACTCT-T
* * * * *
93574 TTT-AAAGCCCACATAAGTCAATGGCAA-TCCTT
1 TTTCAAAGCCCATACAAGTTAGTGACAACT-CTT
* * * * *
93606 TTTCAAAACCCATATAAGTTAGTGGCAACCCCT
1 TTTCAAAGCCCATACAAGTTAGTGACAACTCTT
* * * *
93639 TTT-AAAGCCCATACAAGTCAGTGGCAGC-ATT
1 TTTCAAAGCCCATACAAGTTAGTGACAACTCTT
93670 TTTCAAAGC
1 TTTCAAAGC
93679 TCACATGAGT
Statistics
Matches: 108, Mismatches: 22, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
31 4 0.04
32 49 0.45
33 55 0.51
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (33 bp):
TTTCAAAGCCCATACAAGTTAGTGACAACTCTT
Found at i:93586 original size:65 final size:64
Alignment explanation
Indices: 93443--93720 Score: 220
Period size: 64 Copynumber: 4.3 Consensus size: 64
93433 ATGGCACTCT
* * * * * * * * * *
93443 CTTTTAAAGCCCATACATGTC-GATGACAATCTTTTTTGAAAGCCTACACAAATTAATGGCAACC
1 CTTTTAAAGCCCACACAAGTCAG-TGACAATCCTTTTTCAAAACCCATACAAGTTAGTAGCAACC
* * *
93507 CTTTCAAAGCCCACACAAGTTAGTGACAA-CTCTTTTTCAAAACCCATACAAGTTGGTAGCAACC
1 CTTTTAAAGCCCACACAAGTCAGTGACAATC-CTTTTTCAAAACCCATACAAGTTAGTAGCAACC
* * * * *
93571 TCTTTTAAAGCCCACATAAGTCAATGGCAATCCTTTTTCAAAACCCATATAAGTTAGTGGCAACC
1 -CTTTTAAAGCCCACACAAGTCAGTGACAATCCTTTTTCAAAACCCATACAAGTTAGTAGCAA-C
93636 C
64 C
* * * * * * * ** *
93637 CTTTTAAAGCCCATACAAGTCAGTGGC-AGCATTTTTCAAAGCTCACATGAGTTAGTGGCAACC
1 CTTTTAAAGCCCACACAAGTCAGTGACAATCCTTTTTCAAAACCCATACAAGTTAGTAGCAACC
* *
93700 CTTTCTAAAGCCTACCCAAGT
1 CTTT-TAAAGCCCACACAAGT
93721 TGGTGGTAAC
Statistics
Matches: 175, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
63 7 0.04
64 88 0.50
65 77 0.44
66 3 0.02
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (64 bp):
CTTTTAAAGCCCACACAAGTCAGTGACAATCCTTTTTCAAAACCCATACAAGTTAGTAGCAACC
Found at i:93651 original size:32 final size:32
Alignment explanation
Indices: 93476--93750 Score: 171
Period size: 32 Copynumber: 8.5 Consensus size: 32
93466 TGACAATCTT
* * *
93476 TTTTGAAAGCCTACACAAATTAATGGCAA-CCC
1 TTTT-AAAGCCCACACAAGTTAGTGGCAACCCC
* * * *
93508 TTTCAAAGCCCACACAAGTTAGTGACAACTCT
1 TTTTAAAGCCCACACAAGTTAGTGGCAACCCC
* * * * *
93540 TTTTCAAAACCCATACAAGTTGGTAGCAACCTC
1 TTTT-AAAGCCCACACAAGTTAGTGGCAACCCC
* * * * *
93573 TTTTAAAGCCCACATAAGTCAATGGCAATCCT
1 TTTTAAAGCCCACACAAGTTAGTGGCAACCCC
* * *
93605 TTTTCAAAACCCATATAAGTTAGTGGCAACCCC
1 TTTT-AAAGCCCACACAAGTTAGTGGCAACCCC
* * * **
93638 TTTTAAAGCCCATACAAGTCAGTGGC-AGCAT
1 TTTTAAAGCCCACACAAGTTAGTGGCAACCCC
* **
93669 TTTTCAAAGCTCACATGAGTTAGTGGCAA-CCC
1 TTTT-AAAGCCCACACAAGTTAGTGGCAACCCC
* * * *
93701 TTTCTAAAGCCTACCCAAGTTGGTGGTAA-CCC
1 TTT-TAAAGCCCACACAAGTTAGTGGCAACCCC
*
93733 TCTTAAAAGCCCACACAA
1 T-TTTAAAGCCCACACAA
93751 ATCGATGGCA
Statistics
Matches: 181, Mismatches: 55, Indels: 14
0.72 0.22 0.06
Matches are distributed among these distances:
31 26 0.14
32 101 0.56
33 54 0.30
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (32 bp):
TTTTAAAGCCCACACAAGTTAGTGGCAACCCC
Found at i:93888 original size:60 final size:59
Alignment explanation
Indices: 93759--93998 Score: 301
Period size: 59 Copynumber: 4.1 Consensus size: 59
93749 AAATCGATGG
93759 CATCTCCTTCTAAGC-CTAATGTCATTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
1 CATCTCCTTCTAAGCTC-AATGTCATTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* * *
93818 CATCTCCTTCTAAGCTCAATGTCGTTGGCTTTGAATCCAACACATTGGCACTTATCAAAC
1 CATCTCCTTCTAAGCTCAATGTCATTGGCCTTGAAT-CAACACATTGGCACTTGTCAAAC
* ** *
93878 CATCTCCTTCTAAGCCCAACATCATTGGCCTTAAATCAACACATTGGCACTTGTCAAAC
1 CATCTCCTTCTAAGCTCAATGTCATTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* * * *
93937 C-T-TCTTTCTTAAG-TCCAT-TACTGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAT
1 CATCTCCTTC-TAAGCTCAATGT-C-ATTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
93995 CATC
1 CATC
93999 CTTAAGTCTA
Statistics
Matches: 157, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
56 1 0.01
57 8 0.05
58 39 0.25
59 56 0.36
60 53 0.34
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (59 bp):
CATCTCCTTCTAAGCTCAATGTCATTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
Found at i:93983 original size:58 final size:59
Alignment explanation
Indices: 93783--93998 Score: 264
Period size: 60 Copynumber: 3.7 Consensus size: 59
93773 CCTAATGTCA
*
93783 TTGGCCTTGAATCAACACATTGGCACTTGTCAAACCATCTCCTTCTAAGCTCAATGT-C-G
1 TTGGCCTTGAATCAACACATTGGCACTTGTCAAACCATCTCCTTCTAAG-TCCAT-TACTG
* * * *
93842 TTGGCTTTGAATCCAACACATTGGCACTTATCAAACCATCTCCTTCTAAGCCCA--ACATCA
1 TTGGCCTTGAAT-CAACACATTGGCACTTGTCAAACCATCTCCTTCTAAGTCCATTAC-T-G
* *
93902 TTGGCCTTAAATCAACACATTGGCACTTGTCAAACC-T-TCTTTCTTAAGTCCATTACTG
1 TTGGCCTTGAATCAACACATTGGCACTTGTCAAACCATCTCCTTC-TAAGTCCATTACTG
*
93960 TTGGCCTTGAATCAACACATTGGCACTTGTCAAATCATC
1 TTGGCCTTGAATCAACACATTGGCACTTGTCAAACCATC
93999 CTTAAGTCTA
Statistics
Matches: 134, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
57 6 0.04
58 42 0.31
59 38 0.28
60 48 0.36
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.31
Consensus pattern (59 bp):
TTGGCCTTGAATCAACACATTGGCACTTGTCAAACCATCTCCTTCTAAGTCCATTACTG
Found at i:94009 original size:119 final size:119
Alignment explanation
Indices: 93759--93998 Score: 337
Period size: 119 Copynumber: 2.0 Consensus size: 119
93749 AAATCGATGG
* ** *
93759 CATCTCCTTCTAAGCCTAATGTCATTGGCCTTGAATCAACACATTGGCACTTGTCAAACCATCTC
1 CATCTCCTTCTAAGCCCAACATCATTGGCCTTAAATCAACACATTGGCACTTGTCAAACCATCTC
*
93824 CTTCTAAGCTCAATGTCGTTGGCTTTGAATCCAACACATTGGCACTTATCAAAC
66 CTTCTAAGCTCAATGTCGTTGGCCTTGAATCCAACACATTGGCACTTATCAAAC
93878 CATCTCCTTCTAAGCCCAACATCATTGGCCTTAAATCAACACATTGGCACTTGTCAAACC-T-TC
1 CATCTCCTTCTAAGCCCAACATCATTGGCCTTAAATCAACACATTGGCACTTGTCAAACCATCTC
* * * *
93941 TTTCTTAAG-TCCAT-TACTGTTGGCCTTGAAT-CAACACATTGGCACTTGTCAAAT
66 CTTC-TAAGCTCAATGT-C-GTTGGCCTTGAATCCAACACATTGGCACTTATCAAAC
93995 CATC
1 CATC
93999 CTTAAGTCTA
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
116 1 0.01
117 35 0.32
118 17 0.16
119 56 0.51
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (119 bp):
CATCTCCTTCTAAGCCCAACATCATTGGCCTTAAATCAACACATTGGCACTTGTCAAACCATCTC
CTTCTAAGCTCAATGTCGTTGGCCTTGAATCCAACACATTGGCACTTATCAAAC
Found at i:94103 original size:52 final size:52
Alignment explanation
Indices: 93961--94369 Score: 396
Period size: 52 Copynumber: 7.8 Consensus size: 52
93951 CCATTACTGT
* * *
93961 TGGCCTTGAATCAACACATTGGCA-CTTGTCAAATCATCCTTAAGTCTAATATCG-
1 TGGCCTTGAATCAGCACATTGGCACCTT-T---ATCATCTTTAAGTCCAATATCGC
* * * * * *
94015 TTGCCTTGAATCAGCATATTAGCA-CTCCTCTCATCTTTAAGTCCGATATCAG-
1 TGGCCTTGAATCAGCACATTGGCACCT-TTATCATCTTTAAGTCCAATATC-GC
* * *
94067 TGGCTTTAAATCAGCACATTGGCACCTTTATTATCTTTAAGTCCAATATCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATATCGC
* * * * *
94119 TAGCCTTGAATCAGCATATTGGCACCTTTATCATCTCTAAGTCCAATGTCCC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATATCGC
* * * *
94171 TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAATCCACTGTCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATATCGC
* * * **
94223 TGGCCTTAAATTAGCACATTGGCA-CTATTCTCATCTTTAAGTCTGATATCGC
1 TGGCCTTGAATCAGCACATTGGCACCT-TTATCATCTTTAAGTCCAATATCGC
* * * * *
94275 TTGCTTTGAATCAACATATTGGCACCTTTATCATCTTTAAGTCCAATATCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATATCGC
* * * * *
94327 TGGCCTTGAATTAGTACATTGGCACCATTATCATTTTTGAGTC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTC
94370 AAATGTCGTA
Statistics
Matches: 288, Mismatches: 61, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
51 20 0.07
52 241 0.84
53 4 0.01
54 23 0.08
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (52 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATATCGC
Found at i:95146 original size:53 final size:53
Alignment explanation
Indices: 95064--95180 Score: 150
Period size: 53 Copynumber: 2.2 Consensus size: 53
95054 TTTGGAAAGA
* * *
95064 AAATGTATCGATACATATTTTATTGTATTGATA-ATTGACTGAGTTTTTGA-TCC
1 AAATGTATCAATACATATTTTATTATATTGATACATT--CTGAGTTTTTGACCCC
*
95117 AAATGTATCAATACAT-TTTTCATTATATTGATACATTTTGAGTTTTTGACCCC
1 AAATGTATCAATACATATTTT-ATTATATTGATACATTCTGAGTTTTTGACCCC
95170 AAATGTATCAA
1 AAATGTATCAA
95181 AAAATTCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
52 15 0.26
53 39 0.68
54 3 0.05
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (53 bp):
AAATGTATCAATACATATTTTATTATATTGATACATTCTGAGTTTTTGACCCC
Found at i:99133 original size:81 final size:78
Alignment explanation
Indices: 98917--99154 Score: 237
Period size: 81 Copynumber: 3.0 Consensus size: 78
98907 CCTCTCTCGC
* * * *
98917 TGAAAAATTTAATATTTTGGAGATAACAACGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTG
1 TGAAAAA-TTAATATTTTAGAAATAA-AACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
* *
98982 GAGTATCCCTGATTG
64 GAGTATCCCCGATTA
** * * * * * *
98997 TGAAAAATCGATGA-TTTAGAAATAAAATTGGGATTTGAATATCTCTTCGGAAATAACGGGGTTG
1 TGAAAAATTAAT-ATTTTAGAAATAAAA-CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
99061 GAGTATCCCCCCGATTA
64 GAGTAT--CCCCGATTA
* * *
99078 TGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAAC-GAGATGA
1 TGAAAAATTAATATTTTAGAAATAAAA-CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG-
99142 GAGTATCCCCGAT
64 GAGTATCCCCGAT
99155 GAAAAATTGA
Statistics
Matches: 126, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
78 2 0.02
79 53 0.42
80 13 0.10
81 58 0.46
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (78 bp):
TGAAAAATTAATATTTTAGAAATAAAACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGA
GTATCCCCGATTA
Found at i:101556 original size:13 final size:13
Alignment explanation
Indices: 101538--101563 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101528 ACAAAGATCG
101538 ATGTATCGATACA
1 ATGTATCGATACA
101551 ATGTATCGATACA
1 ATGTATCGATACA
101564 TTCTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:101640 original size:19 final size:21
Alignment explanation
Indices: 101616--101667 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
101606 AGTGATACAT
*
101616 TGTATCGATACA-TTACT-TA
1 TGTATCGATACATTTACTGAA
101635 TGTATCGATACATTTACTGAA
1 TGTATCGATACATTTACTGAA
101656 TGTATCGATACA
1 TGTATCGATACA
101668 AATTATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 12 0.40
20 5 0.17
21 13 0.43
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTACTGAA
Found at i:102465 original size:42 final size:41
Alignment explanation
Indices: 102391--102493 Score: 116
Period size: 42 Copynumber: 2.5 Consensus size: 41
102381 CCGTTTTTCG
* *
102391 AGGACAAAGGAAAAAAGGAAACGAAATATGTCCTACTCTCTA
1 AGGACAAAAG-AAAAAGGAAAAGAAATATGTCCTACTCTCTA
* * * * *
102433 AGGACAAAAGAAAAAGGAAAATAAAGTGTGTCCTGCTCTTTG
1 AGGACAAAAGAAAAAGGAAAAGAAA-TATGTCCTACTCTCTA
*
102475 AGGACAAAAGAGAAAGGAA
1 AGGACAAAAGAAAAAGGAA
102494 GTGTGTCCTA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 13 0.25
42 39 0.75
ACGTcount: A:0.49, C:0.13, G:0.23, T:0.16
Consensus pattern (41 bp):
AGGACAAAAGAAAAAGGAAAAGAAATATGTCCTACTCTCTA
Found at i:102569 original size:61 final size:61
Alignment explanation
Indices: 102498--102785 Score: 379
Period size: 60 Copynumber: 4.8 Consensus size: 61
102488 AAGGAAGTGT
* * * *
102498 GTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCGAAAGGAGAAGAC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAGGC
*
102559 GTCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTG-AAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAGGC
* * * * *
102619 ATCCTGCTTTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGAGCTTTGAAAA-AAAAAGC
1 GTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAGGC
* * *
102679 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAGGC
* * *
102740 GTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTTTGGGCTT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT
102786 TAAAAGGCAT
Statistics
Matches: 204, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
59 5 0.02
60 126 0.62
61 68 0.33
62 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAGGC
Found at i:102979 original size:154 final size:151
Alignment explanation
Indices: 102680--102969 Score: 420
Period size: 154 Copynumber: 1.9 Consensus size: 151
102670 AAAAAAAGCA
* *
102680 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGAACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCATCCT
* *
102745 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTTTGGGCTTTAAAAGGCATCCTGTTCTTTGAGG
66 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
*
102810 ACAAAAAGGCGAAATGAGAGAGTG
131 ---AAAAGGCAAAATGAGAGAGTG
* * *
102834 TCCTGCTCTTTGAGAACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCC
1 TCCTGCTCTTTGAGAACTGA-AAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCATCC
102898 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAGGCATCCTGCTCT
65 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT---A--AAAGGCATCCTGCTCT
102963 TTGAGGA
125 TTGAGGA
102970 TTGGAAAATG
Statistics
Matches: 123, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
153 1 0.01
154 99 0.80
156 1 0.01
157 1 0.01
159 21 0.17
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (151 bp):
TCCTGCTCTTTGAGAACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCATCCT
GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
AAAAGGCAAAATGAGAGAGTG
Found at i:102999 original size:214 final size:214
Alignment explanation
Indices: 102620--103025 Score: 577
Period size: 214 Copynumber: 1.9 Consensus size: 214
102610 AGAAAAGGCA
* *
102620 TCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAAAAAAAGCATCCTG
1 TCCTGCTCTTTGAGAACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAAAAAAAGCATCCTG
*
102685 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCGTCCTGCTCT
66 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCATCCTGCTCT
** * * *
102750 TTGAGGACTGAAGGTGCCACCAGCTTGTTTGGGCTTTAAAAGGCATCCTGTTCTTTGAGGACAAA
131 TTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAA
102815 AAGGCGAAATGAGAGAGTG
196 AAGGCGAAATGAGAGAGTG
* * * *
102834 TCCTGCTCTTTGAGAACTAGG-AAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCATC
1 TCCTGCTCTTTGAGAACT-GGAAAATGCCACCAACTTGTGTGAGCTTTGAAAA--AAAAAGCATC
* * * *
102897 CTGCTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGA-AAGGCATCCTGC
63 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCATCCTGC
* * *
102960 TCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTTAAGAGGCATCCTGCTCTTTGAGGA
128 TCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGA
103025 C
192 C
103026 TGGAAAATGC
Statistics
Matches: 169, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
213 26 0.15
214 116 0.69
215 27 0.16
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (214 bp):
TCCTGCTCTTTGAGAACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAAAAAAAGCATCCTG
CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTCAAAAAGAGAAGGCATCCTGCTCT
TTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAA
AAGGCGAAATGAGAGAGTG
Found at i:103189 original size:171 final size:172
Alignment explanation
Indices: 102833--103534 Score: 896
Period size: 171 Copynumber: 4.1 Consensus size: 172
102823 ATGAGAGAGT
* * * *
102833 GTCCTGCTCTTTGAGAACTAGG-AA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GTCCTGCTCTTTGAGGACT-GGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGT
* ** * *
102896 CCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAGGCATCCTGC
65 CCTACTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTT-----GAAAGGCATCCTGC
* * * *
102960 TCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTTAAGAGGCA
125 TCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-A
* * *
103009 -TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAGGTGTC
1 GTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTC
* *
103072 CTACTCTTTGAGGATTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTTTTTG
66 CTACTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTG
* *
103137 AGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAA
131 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * *
103179 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAAAAGGTGTC
1 GTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTC
* *
103243 CTGCTCTTTGAGGATTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTG
66 CTACTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTG
*
103308 AGGACTAGG-AAGTACCACCAACTTGTGTGGGCTTTAAAAGGA
131 AGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
103350 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTC
1 GTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTC
* *** * *
103408 C-AGCTCTTTGAGGACTCGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
66 CTA-CTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
* *
103472 GAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
130 GAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGA
103515 GTCCTGCTCTTTGAGGACTG
1 GTCCTGCTCTTTGAGGACTG
103535 AAGGGTGAAA
Statistics
Matches: 476, Mismatches: 41, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
163 1 0.00
164 2 0.00
165 117 0.25
166 1 0.00
170 5 0.01
171 255 0.54
172 2 0.00
174 2 0.00
175 67 0.14
176 24 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (172 bp):
GTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTC
CTACTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTG
AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
Found at i:103536 original size:55 final size:55
Alignment explanation
Indices: 102833--103533 Score: 746
Period size: 55 Copynumber: 12.3 Consensus size: 55
102823 ATGAGAGAGT
* *
102833 GTCCTGCTCTTTGAGAACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGC
* * *
102894 ATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-----GAAAGGC
* * * * *
102953 ATCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTT-AAGAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGC
* * * * *
103008 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGC
* * * *
103069 GTCCTACTCTTTGAGGATTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * * * * **
103124 ATCCTGCTTTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAA
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* *
103179 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGC
* * *
103240 GTCCTGCTCTTTGAGGATTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * * * *
103295 ATCCTGCTCTTTGAGGACTAGGAAGTACCACCAACTTGTGTGGGCTTTAAAAGGA
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
103350 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * ** * *
103405 GTCCAGCTCTTTGAGGACTCGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
103460 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGC
103515 GTCCTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
103534 GAAGGGTGAA
Statistics
Matches: 553, Mismatches: 67, Indels: 46
0.83 0.10 0.07
Matches are distributed among these distances:
54 10 0.02
55 349 0.63
56 4 0.01
59 23 0.04
60 56 0.10
61 105 0.19
62 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
Found at i:105963 original size:79 final size:78
Alignment explanation
Indices: 105775--105973 Score: 213
Period size: 79 Copynumber: 2.5 Consensus size: 78
105765 GAGATAATAA
* * * * ** * *
105775 CGGGGTTGGAGTGTTCCCT-TGAAACTAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATG
1 CGGGGTTGGAGTATCCCCTCAGAAA-TAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATG
*
105839 ATTAGAAAAAAAAT
65 ATTAGAAAAAAAAC
* * *
105853 CGGGATTGGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCAATTATGAGAAATCAAT-A
1 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
* * *
105917 TTTTGGAAACAAAGC
66 --TTAGAAAAAAAAC
*
105932 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTAT
105974 TCGCAATGAT
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
77 1 0.01
78 48 0.48
79 50 0.51
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
TTAGAAAAAAAAC
Found at i:105964 original size:28 final size:27
Alignment explanation
Indices: 105932--106004 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
105922 GAAACAAAGC
**
105932 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCAAGG-AATAA
* * * *
105960 CGGGGTTGGAGTATTCGCAATGATTAA
1 CGGGGTTGGAGTATCCCCAAGGAATAA
105987 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
106005 GATTGTGAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCAAGGAATAA
Found at i:106062 original size:54 final size:52
Alignment explanation
Indices: 105991--106121 Score: 149
Period size: 51 Copynumber: 2.5 Consensus size: 52
105981 GATTAACGGG
* * * *
105991 GTTGGAGTATCCCCGATTGTGA-AGAAATTGGTATTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAGA-AAATTAG--TGTCTTGAAAATAAAATCGGA
* *
106045 GTTGGAGTATCCTCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAGAAAATTAGTGTCTTGAAAATAAAATCGGA
*
106096 GTTGGAATATCCCCGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGT-GAGAA
106122 TTGAGAAACT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
51 35 0.54
53 11 0.17
54 19 0.29
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAGAAAATTAGTGTCTTGAAAATAAAATCGGA
Found at i:108488 original size:13 final size:13
Alignment explanation
Indices: 108470--108495 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108460 ACAAAGATCC
108470 ATGTATCGATACA
1 ATGTATCGATACA
108483 ATGTATCGATACA
1 ATGTATCGATACA
108496 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:108491 original size:33 final size:33
Alignment explanation
Indices: 108449--108515 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
108439 AAAATTTCCA
***
108449 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
108482 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
108515 A
1 A
108516 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:108649 original size:21 final size:21
Alignment explanation
Indices: 108625--108682 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
108615 ACATTTGTAG
108625 AATGTATCGATACATTCCACA
1 AATGTATCGATACATTCCACA
108646 AATGTATCGATACATTCCACA
1 AATGTATCGATACATTCCACA
108667 AATGTATCGATACATT
1 AATGTATCGATACATT
108683 TTTTTTTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (21 bp):
AATGTATCGATACATTCCACA
Found at i:109838 original size:59 final size:59
Alignment explanation
Indices: 109405--110576 Score: 1378
Period size: 55 Copynumber: 20.3 Consensus size: 59
109395 ATAAAGTGTA
* * * *
109405 TCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
109460 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
109515 TCCTGCTCTTTGAGGACTGGAACATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
109570 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG---A-G-G
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
109625 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
109686 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCAAAA-GCA
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAGGCG
*
109746 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
109805 TCCTGCTCTTTGAGGATTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
109864 TCCCGCCCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** * *
109923 TCCCACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
109982 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
110041 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
110100 TCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
110155 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
110210 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
110265 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----AAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
110320 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
** * *
110381 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
110442 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT--AAG---AGGCG
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
110497 TCCTGCTCTCTCAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
110558 TCCTGCTCTTTGAGGACTG
1 TCCTGCTCTTTGAGGACTG
110577 GGAAGTGCTA
Statistics
Matches: 1003, Mismatches: 70, Indels: 84
0.87 0.06 0.07
Matches are distributed among these distances:
53 1 0.00
54 2 0.00
55 420 0.42
56 7 0.01
57 5 0.00
58 7 0.01
59 308 0.31
60 108 0.11
61 141 0.14
62 4 0.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:109981 original size:177 final size:174
Alignment explanation
Indices: 109405--110576 Score: 1470
Period size: 177 Copynumber: 6.8 Consensus size: 174
109395 ATAAAGTGTA
* ** *
109405 TCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT-GAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTCT
*
109469 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTGTCCTGCTCTTTGAG
66 TTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAG
** *
109529 GACTGGAACATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
130 GACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
109570 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-GAAAGAG-GTCCTGCTC
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAG-GCGTCCTGCTC
* * *
109633 TTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTG
65 TTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTG
* *
109698 AGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCAAAA-GCA
128 AGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAGGCG
* *
109746 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCGTCCTG
* * *
109810 CTCTTTGAGGATTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCCCTTT
62 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTT
109875 GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
127 GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
109923 TCCCACTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---A-GAAAGGCGTCCTG
*
109987 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGCGTCCTGCTCTTT
62 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTT
* *
110052 GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGTG
127 GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
110100 TCCTGCTCTTCGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTA-AAAGGTGTCCTGCTC
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTC
* * * * *
110163 TTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCATCCTACTCTTTGA
65 TTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGA
*
110223 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
129 GGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
110265 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA-AAAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTCT
* * *
110329 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
66 TTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGA
** * *
110394 GGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
129 GGACT-GAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
110442 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA-AGAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTCT
* * *
110506 CTCAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTG
66 TTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTG
110570 AGGACTG
128 AGGACTG
110577 GGAAGTGCTA
Statistics
Matches: 895, Mismatches: 69, Indels: 75
0.86 0.07 0.07
Matches are distributed among these distances:
165 188 0.21
166 5 0.01
168 5 0.01
169 24 0.03
170 55 0.06
171 68 0.08
172 1 0.00
173 24 0.03
174 27 0.03
175 27 0.03
176 28 0.03
177 309 0.35
178 82 0.09
179 30 0.03
180 22 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (174 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTCT
TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGG
ACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:124031 original size:79 final size:79
Alignment explanation
Indices: 123896--124132 Score: 291
Period size: 79 Copynumber: 3.0 Consensus size: 79
123886 ACCTCTCTCG
* * * * *
123896 ATGAAAAATTTAATATTTTGGAGATAACAA-CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGT
1 ATGAAAAA-TCAATATTTTAGAAATAA-AACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGT
123960 TGGAGTATCCCCGATT
64 TGGAGTATCCCCGATT
* * ** *
123976 GTGAAAAATCGATGA-TTTAGAAATAAAATTGGGATTGGAGTATCTCCTCGGAAATAACGGGGTT
1 ATGAAAAATCAAT-ATTTTAGAAATAAAACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTT
124040 GGAGTATCCCCGATT
65 GGAGTATCCCCGATT
* * * *
124055 ATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAAC-GGGATG
1 ATGAAAAATCAATATTTTAGAAATAAAACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTG
124119 AGAGTATCCCCGAT
66 -GAGTATCCCCGAT
124133 GAAAAATTGA
Statistics
Matches: 135, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 8 0.06
79 119 0.88
80 8 0.06
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
ATGAAAAATCAATATTTTAGAAATAAAACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTG
GAGTATCCCCGATT
Found at i:126654 original size:19 final size:21
Alignment explanation
Indices: 126630--126679 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
126620 CGATACACTA
*
126630 TATCGATACA-TTACT-TATG
1 TATCGATACATTTACTGAATG
126649 TATCGATACATTTACTGAATG
1 TATCGATACATTTACTGAATG
126670 TATCGATACA
1 TATCGATACA
126680 AATTATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 10 0.36
20 5 0.18
21 13 0.46
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (21 bp):
TATCGATACATTTACTGAATG
Found at i:128612 original size:13 final size:13
Alignment explanation
Indices: 128594--128620 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
128584 TTTACTATGC
128594 ATCGATACAATGT
1 ATCGATACAATGT
128607 ATCGATACAATGT
1 ATCGATACAATGT
128620 A
1 A
128621 CCATATATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATCGATACAATGT
Found at i:128710 original size:19 final size:19
Alignment explanation
Indices: 128664--128716 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
128654 ACTGCCAGTT
*
128664 TCATGTATCGATA-CAATT
1 TCATGTATCGATACCAATA
128682 TGCAATGTATCGATACCAATA
1 T-C-ATGTATCGATACCAATA
128703 TCATGTATCGATAC
1 TCATGTATCGATAC
128717 AGTGTATGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 13 0.42
20 12 0.39
21 5 0.16
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (19 bp):
TCATGTATCGATACCAATA
Found at i:133080 original size:33 final size:33
Alignment explanation
Indices: 133024--133090 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
133014 GTTACAAGCT
** *
133024 ATGTATCGATACATTTCTTCATGTATTGATACA
1 ATGTATCGATACATTTCAGCATGTATCGATACA
133057 ATGTATCGATACATTGT-AGCATGTATCGATACA
1 ATGTATCGATACATT-TCAGCATGTATCGATACA
133090 A
1 A
133091 ATAGTGATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACATTTCAGCATGTATCGATACA
Found at i:140180 original size:3 final size:3
Alignment explanation
Indices: 140167--140196 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
140157 CTTCATCCGA
*
140167 ATC ACC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
140197 TTCCTCTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (3 bp):
ATC
Found at i:141819 original size:13 final size:13
Alignment explanation
Indices: 141801--141831 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
141791 ACATTTCTTC
141801 ATGTATCGATACA
1 ATGTATCGATACA
141814 ATGTATCGATACA
1 ATGTATCGATACA
*
141827 TTGTA
1 ATGTA
141832 GCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:141819 original size:33 final size:33
Alignment explanation
Indices: 141781--141847 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
141771 ATTACAAGCT
**
141781 ATGTATCGATACATT-TCTTCATGTATCGATACA
1 ATGTATCGATACATTGT-AGCATGTATCGATACA
141814 ATGTATCGATACATTGTAGCATGTATCGATACA
1 ATGTATCGATACATTGTAGCATGTATCGATACA
141847 A
1 A
141848 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTAGCATGTATCGATACA
Found at i:141895 original size:13 final size:13
Alignment explanation
Indices: 141877--141903 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
141867 TGCCAGTTTC
141877 ATGTATCGATACA
1 ATGTATCGATACA
141890 ATGTATCGATACA
1 ATGTATCGATACA
141903 A
1 A
141904 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:147321 original size:20 final size:20
Alignment explanation
Indices: 147296--147349 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
147286 GTTAGGCACA
** * *
147296 ATGTATCGATACTTTTTACT
1 ATGTATCGATACAATGTACC
147316 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
147336 ATGTATCGATACAA
1 ATGTATCGATACAA
147350 ATAGTGGTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:153425 original size:20 final size:22
Alignment explanation
Indices: 153395--153440 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
153385 GATGCCAAAC
153395 TTTTCTAAATTTT-AAATTAAG
1 TTTTCTAAATTTTAAAATTAAG
153416 TTTT-TAAATTTTGAAAATTAAG
1 TTTTCTAAATTTT-AAAATTAAG
153438 TTT
1 TTT
153441 CGTACCCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.35
21 4 0.17
22 11 0.48
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (22 bp):
TTTTCTAAATTTTAAAATTAAG
Found at i:154494 original size:22 final size:22
Alignment explanation
Indices: 154466--154518 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
154456 GGTATGGCTG
*
154466 CTACTTGCTAGAGTTTCGGTTA
1 CTACTTGCTAGAGTTTCAGTTA
*
154488 CTGCTTGCTAGAGTTTCAGTTA
1 CTACTTGCTAGAGTTTCAGTTA
154510 CTACTTGCT
1 CTACTTGCT
154519 CTTTTCTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.42
Consensus pattern (22 bp):
CTACTTGCTAGAGTTTCAGTTA
Found at i:154877 original size:27 final size:28
Alignment explanation
Indices: 154811--154877 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 28
154801 TGTTGTCCGC
* * *
154811 TTCTTTCTCTTTTATTCATTTCAACTGTT
1 TTCTTTCT-TTCTATTCATTACAACTGAT
* *
154840 TTGTTTC-TTCTCTTCATTACAACT-AT
1 TTCTTTCTTTCTATTCATTACAACTGAT
154866 TTCTTTCTTTCT
1 TTCTTTCTTTCT
154878 TTATTGCATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 7 0.23
27 18 0.58
29 6 0.19
ACGTcount: A:0.13, C:0.22, G:0.03, T:0.61
Consensus pattern (28 bp):
TTCTTTCTTTCTATTCATTACAACTGAT
Found at i:155370 original size:33 final size:31
Alignment explanation
Indices: 155333--155401 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 31
155323 TTTTAATTTG
*
155333 ATTTTTATATTA-AATATATAATTTTTTATATAT
1 ATTTTTAAATTATAAT-TAT-ATTTTTTAT-TAT
* *
155366 ATTTTTAAATTATGATTATATTTTTTATTTT
1 ATTTTTAAATTATAATTATATTTTTTATTAT
155397 ATTTT
1 ATTTT
155402 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 7 0.22
32 9 0.28
33 14 0.44
34 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (31 bp):
ATTTTTAAATTATAATTATATTTTTTATTAT
Found at i:157941 original size:1 final size:1
Alignment explanation
Indices: 157935--158057 Score: 93
Period size: 1 Copynumber: 123.0 Consensus size: 1
157925 AAATCTTCAC
* * ** * * * **
157935 TTTTTTTTTGTTTTTTTTTTTTGTTTTTCCTTTTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * ** * * *
158000 TTTTTTGTTTTGTTTTTTTTTTTCTTTTTCCTTTTTTTTGTTTTGTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
158058 CCAATTGCCA
Statistics
Matches: 94, Mismatches: 28, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 94 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (1 bp):
T
Found at i:157968 original size:17 final size:17
Alignment explanation
Indices: 157948--158043 Score: 112
Period size: 16 Copynumber: 5.8 Consensus size: 17
157938 TTTTTTGTTT
157948 TTTTTTTTTGTTTTTCC
1 TTTTTTTTTGTTTTTCC
157965 TTTTTTTTTGTTTTGT--
1 TTTTTTTTTGTTTT-TCC
*
157981 TTTTTTTTTCTTTTTCC
1 TTTTTTTTTGTTTTTCC
*
157998 -TTTTTTTTGTTTTGT-T
1 TTTTTTTTTGTTTT-TCC
*
158014 TTTTTTTTTCTTTTTCC
1 TTTTTTTTTGTTTTTCC
158031 -TTTTTTTTGTTTT
1 TTTTTTTTTGTTTT
158044 GTTTTTTTCT
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
15 1 0.01
16 38 0.57
17 27 0.40
18 1 0.01
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.85
Consensus pattern (17 bp):
TTTTTTTTTGTTTTTCC
Found at i:157984 original size:33 final size:32
Alignment explanation
Indices: 157934--158051 Score: 186
Period size: 33 Copynumber: 3.7 Consensus size: 32
157924 CAAATCTTCA
* *
157934 CTTTTTTTT-TGTT-TTTTTTTTTTGTTTTTC
1 CTTTTTTTTGTTTTGTTTTTTTTTTCTTTTTC
157964 CTTTTTTTTTGTTTTGTTTTTTTTTTCTTTTTC
1 C-TTTTTTTTGTTTTGTTTTTTTTTTCTTTTTC
157997 CTTTTTTTTGTTTTGTTTTTTTTTTTCTTTTTC
1 CTTTTTTTTGTTTTG-TTTTTTTTTTCTTTTTC
158030 CTTTTTTTTGTTTTGTTTTTTT
1 CTTTTTTTTGTTTTGTTTTTTT
158052 CTTTTTCCAA
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
30 1 0.01
31 8 0.10
32 24 0.29
33 49 0.60
ACGTcount: A:0.00, C:0.08, G:0.07, T:0.86
Consensus pattern (32 bp):
CTTTTTTTTGTTTTGTTTTTTTTTTCTTTTTC
Found at i:166982 original size:18 final size:18
Alignment explanation
Indices: 166959--166998 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
166949 GTATAATATG
*
166959 AAATACATATTCTAATAC
1 AAATACATATTATAATAC
*
166977 AAATACGTATTATAATAC
1 AAATACATATTATAATAC
166995 AAAT
1 AAAT
166999 GTATCGTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.33
Consensus pattern (18 bp):
AAATACATATTATAATAC
Found at i:168762 original size:18 final size:18
Alignment explanation
Indices: 168739--168773 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
168729 CCTATGCATC
*
168739 TTTAAAAAACTTATCTCT
1 TTTAAAAAAATTATCTCT
168757 TTTAAAAAAATTATCTC
1 TTTAAAAAAATTATCTC
168774 CTTAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTAAAAAAATTATCTCT
Found at i:168781 original size:18 final size:18
Alignment explanation
Indices: 168742--168781 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
168732 ATGCATCTTT
* * *
168742 AAAAAACTTATCTCTTTT
1 AAAAAAATTATCTCCTTA
168760 AAAAAAATTATCTCCTTA
1 AAAAAAATTATCTCCTTA
168778 AAAA
1 AAAA
168782 TTATCAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAAAATTATCTCCTTA
Found at i:169746 original size:17 final size:17
Alignment explanation
Indices: 169726--169784 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
169716 ATATTTTAAG
169726 TAATTTTATTAATTCAT
1 TAATTTTATTAATTCAT
* *
169743 TAA-TTGAGTTAATATCAA
1 TAATTTTA-TTAAT-TCAT
*
169761 TAATTTTA-TAATTAAT
1 TAATTTTATTAATTCAT
169777 ATAATTTT
1 -TAATTTT
169785 TTATTTTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 5 0.15
17 19 0.58
18 6 0.18
19 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TAATTTTATTAATTCAT
Found at i:170562 original size:29 final size:25
Alignment explanation
Indices: 170501--170580 Score: 70
Period size: 29 Copynumber: 2.9 Consensus size: 25
170491 ATATTAAGTT
*
170501 ATTTATATTTTAAAATTAATAAAAA
1 ATTTAAATTTTAAAATTAATAAAAA
170526 ATCATTAAATTATTAAAGATTAATTTAAAAA
1 AT--TTAAATT-TTAAA-ATTAA--TAAAAA
* *
170557 ATTTAAATATATAATATTAATAAA
1 ATTTAAAT-TTTAAAATTAATAAA
170581 TTTAAACGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
25 2 0.04
26 4 0.09
27 6 0.13
28 10 0.22
29 14 0.31
30 1 0.02
31 8 0.18
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (25 bp):
ATTTAAATTTTAAAATTAATAAAAA
Found at i:170576 original size:23 final size:21
Alignment explanation
Indices: 170538--170586 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
170528 CATTAAATTA
170538 TTAAAGATTAATTTAAAAAAT
1 TTAAAGATTAATTTAAAAAAT
* *
170559 TTAAATATATAATATTAATAAAT
1 TTAAAGAT-TAAT-TTAAAAAAT
170582 TTAAA
1 TTAAA
170587 CGAGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.29
22 4 0.17
23 13 0.54
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TTAAAGATTAATTTAAAAAAT
Found at i:170964 original size:11 final size:11
Alignment explanation
Indices: 170929--170981 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
170919 ATTAATTATC
170929 ATTATTTTTAA
1 ATTATTTTTAA
* *
170940 A-TATTTATAT
1 ATTATTTTTAA
170950 ATTATTTTTAA
1 ATTATTTTTAA
* *
170961 ATTATTTATAT
1 ATTATTTTTAA
170972 ATTAATTTTT
1 ATT-ATTTTT
170982 TAAAAATTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 8 0.24
11 20 0.61
12 5 0.15
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTATTTTTAA
Found at i:170966 original size:22 final size:21
Alignment explanation
Indices: 170929--170991 Score: 90
Period size: 21 Copynumber: 2.9 Consensus size: 21
170919 ATTAATTATC
170929 ATTATTTTTAAATATTTATAT
1 ATTATTTTTAAATATTTATAT
170950 ATTATTTTTAAATTATTTATAT
1 ATTATTTTTAAA-TATTTATAT
*
170972 ATTAATTTTTTAAAAATTTA
1 ATT-A-TTTTTAAATATTTA
170992 AAAATTTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
21 12 0.32
22 12 0.32
23 6 0.16
24 8 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTTTTAAATATTTATAT
Found at i:176428 original size:92 final size:92
Alignment explanation
Indices: 176305--176483 Score: 322
Period size: 92 Copynumber: 1.9 Consensus size: 92
176295 TAAGTAAGCA
*
176305 TTAGGGAAACTCTTCAAATACAAGGTAATTCATCGCTGTAATGGATGTGTTTGGGGCTTTTGGGG
1 TTAGGGAAACTCTTCAAATACAAGGTAATTCATCGCTGTAATGGATGTGTTTGGGACTTTTGGGG
*
176370 CTACCATGTTTAAGTAGAGTGCAATAG
66 CTACCAAGTTTAAGTAGAGTGCAATAG
* *
176397 TTAGGGAAACTCTTCGAATACAAGGTAATTCATTGCTGTAATGGATGTGTTTGGGACTTTTGGGG
1 TTAGGGAAACTCTTCAAATACAAGGTAATTCATCGCTGTAATGGATGTGTTTGGGACTTTTGGGG
176462 CTACCAAGTTTAAGTAGAGTGC
66 CTACCAAGTTTAAGTAGAGTGC
176484 CAGTTAATTG
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 83 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (92 bp):
TTAGGGAAACTCTTCAAATACAAGGTAATTCATCGCTGTAATGGATGTGTTTGGGACTTTTGGGG
CTACCAAGTTTAAGTAGAGTGCAATAG
Found at i:186309 original size:28 final size:28
Alignment explanation
Indices: 186271--186347 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
186261 AATTCTAAAT
* * *
186271 AATTATGTCTTAAGAAGATAAGGTAGATA
1 AATT-TGTCTTAATAAGATAAAGCAGATA
186300 AATTTGTCTTAATAAGA-ACAAGCAGATA
1 AATTTGTCTTAATAAGATA-AAGCAGATA
**
186328 AGGTTGTCTTAATAAGATAA
1 AATTTGTCTTAATAAGATAA
186348 TGTCTAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 35 0.85
29 5 0.12
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.31
Consensus pattern (28 bp):
AATTTGTCTTAATAAGATAAAGCAGATA
Found at i:186392 original size:85 final size:85
Alignment explanation
Indices: 186294--186450 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 85
186284 GAAGATAAGG
* * * * * *
186294 TAGATAAATTTGTCTTAATAAGAACA-A-GCAGATAAGGTTGTCTTAATAAGATAATGTCTAAAA
1 TAGATAAACTTGTCCTAATAAGAACATATG-A-ATAAAGTTATCTTAACAAGACAATGTCTAAAA
186357 TAGACATGTATTTAAGACAATA
64 TAGACATGTATTTAAGACAATA
* **
186379 TAGATAAACTTGTCCTAATAAGAGCATATGAATAAAGTTATCTTAACAAGACAATGTCTAAGGTA
1 TAGATAAACTTGTCCTAATAAGAACATATGAATAAAGTTATCTTAACAAGACAATGTCTAAAATA
186444 GACATGT
66 GACATGT
186451 GTTAAGAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 58 0.95
86 2 0.03
87 1 0.02
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (85 bp):
TAGATAAACTTGTCCTAATAAGAACATATGAATAAAGTTATCTTAACAAGACAATGTCTAAAATA
GACATGTATTTAAGACAATA
Found at i:186974 original size:25 final size:25
Alignment explanation
Indices: 186946--186994 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
186936 GACATCATGA
186946 GATAGAATTATGGTTGAAATAGGAG
1 GATAGAATTATGGTTGAAATAGGAG
186971 GATAGAATTATGGTTGAAATAGGA
1 GATAGAATTATGGTTGAAATAGGA
186995 ACCTTAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.29
Consensus pattern (25 bp):
GATAGAATTATGGTTGAAATAGGAG
Found at i:188805 original size:72 final size:72
Alignment explanation
Indices: 188688--188833 Score: 274
Period size: 72 Copynumber: 2.0 Consensus size: 72
188678 TGTGCAGAGG
* *
188688 AGAAAAATCAACAATACCTTTGGCTTGTCCCTTATCTCATTGGCTGAGCATGAAGATAAGTAGAA
1 AGAAAAATCAACAACACCCTTGGCTTGTCCCTTATCTCATTGGCTGAGCATGAAGATAAGTAGAA
188753 ACATGCT
66 ACATGCT
188760 AGAAAAATCAACAACACCCTTGGCTTGTCCCTTATCTCATTGGCTGAGCATGAAGATAAGTAGAA
1 AGAAAAATCAACAACACCCTTGGCTTGTCCCTTATCTCATTGGCTGAGCATGAAGATAAGTAGAA
188825 ACATGCT
66 ACATGCT
188832 AG
1 AG
188834 CTCAACAGAG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (72 bp):
AGAAAAATCAACAACACCCTTGGCTTGTCCCTTATCTCATTGGCTGAGCATGAAGATAAGTAGAA
ACATGCT
Found at i:194173 original size:52 final size:52
Alignment explanation
Indices: 194025--194153 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
194015 CGAAATATGA
* *
194025 AAATTTGCCTGCATGTATCGATATATTTCATAGTGTATCGATACATCTTGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
194077 AAATTTACCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
194129 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
194154 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:194180 original size:13 final size:13
Alignment explanation
Indices: 194162--194186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
194152 CAAAGATCAG
194162 TGTATCGATACAA
1 TGTATCGATACAA
194175 TGTATCGATACA
1 TGTATCGATACA
194187 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:194253 original size:19 final size:20
Alignment explanation
Indices: 194229--194281 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
194219 TAGCTTACAT
194229 TGTATCGATACAAAAC-TTA
1 TGTATCGATACAAAACTTTA
*
194248 TGTATCGATACAACACTTTA
1 TGTATCGATACAAAACTTTA
194268 TGTATCGATACAAA
1 TGTATCGATACAAA
194282 TCGTTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAAAACTTTA
Found at i:195147 original size:58 final size:58
Alignment explanation
Indices: 195069--195215 Score: 258
Period size: 58 Copynumber: 2.5 Consensus size: 58
195059 TGAAGAAAAA
* **
195069 TGCCAATGTGCTAAGGCAAGGCCAGCGACATCGAGCTTAGGAATGTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATCGAGCTTAGGAATGTTAAAGATGAAGG
*
195127 TGCCAATGTGTTGATTCAAGGCCAGCGACATCGAGCTTAGGAATGTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATCGAGCTTAGGAATGTTAAAGATGAAGG
195185 TGCCAATGTGCTGATTCAAGGCCAGCGACAT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACAT
195216 TGGACCTAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 84 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (58 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATCGAGCTTAGGAATGTTAAAGATGAAGG
Found at i:195345 original size:43 final size:43
Alignment explanation
Indices: 195284--196821 Score: 1332
Period size: 43 Copynumber: 33.1 Consensus size: 43
195274 TAAATATGAC
* *
195284 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
195327 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
195370 AAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTTTTAAAAATG
1 ---A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCTATATT-GG-------ACTT
*
195428 ACGAAGGCGCCAATATGCTGATTCAAGGCCAG-TGATATTGGACTT
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTT
** * * *
195473 GGAGGTGCCAATGTCCTGATTCAAGGCCAGCTACATTGGACTTAAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T------T
* * *
195523 GACAAAGGCGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
195569 AGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
195612 AAAAGATGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTAGACTT
1 -AAAG--G-----TGC-C-AATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
195665 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
*
195714 GACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
195760 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
195803 AAAGGTGCCAATGTGTTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
195846 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
195895 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
195938 AAAGATGAATATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 AAAG--G----TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
195987 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
196030 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * * * *
196079 GGAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGATTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA-CT-----T
* *
196128 GACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
196174 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
196217 AAAGATGATGGTGCCAATAGGCTGATTCAAGGCCAGCGATATTGGACTT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
196266 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
196309 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
196358 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
196401 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* **
196450 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACGTTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
196493 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
196542 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
196585 GAGGTGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 -A----AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
196633 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
196676 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
196725 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
196768 AAAAGACAAGGTGCCAATATACTAATTCAAGGCCAGCGATATTGGACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
196817 AAAGG
1 AAAGG
196822 AAGATGCCAC
Statistics
Matches: 1241, Mismatches: 139, Indels: 230
0.77 0.09 0.14
Matches are distributed among these distances:
43 585 0.47
44 23 0.02
45 11 0.01
46 14 0.01
47 10 0.01
48 51 0.04
49 333 0.27
50 34 0.03
51 6 0.00
52 75 0.06
53 94 0.08
54 1 0.00
55 1 0.00
56 2 0.00
58 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:195511 original size:96 final size:96
Alignment explanation
Indices: 195182--195805 Score: 770
Period size: 96 Copynumber: 6.5 Consensus size: 96
195172 TTAAAGATGA
* *
195182 AGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACCT-AAAGATGACAAAGGCGCCAATAT
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
*
195246 GCTGATTCAAGGCCAGCGATATTGGACTTAAATATGACAA
66 GCTGATTCAAGGCCAGCGATATTGGAC-----T-TG---G
* * * * * *
195286 AGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T------T---AAAGGTGCCAATGT
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
* *
195341 GCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATG
66 GCTGATTCAAGGCCAGCGATATTGGACTT----G--G
* * * ** *
195378 AGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTTTTAAAA-ATGACGAAGGCGCCAAT
1 A-GGTGCCAATGTGCTGATTCAAGGCCAGCTACATT-GGACTTAAAAGATGACAAAGGCGCCAAT
*
195442 ATGCTGATTCAAGGCCAGTGATATTGGACTTGG
64 ATGCTGATTCAAGGCCAGCGATATTGGACTTGG
*
195475 AGGTGCCAATGTCCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
* *
195540 GCTGATTTAAGGCCAGCGATATTGGACTTAG
66 GCTGATTCAAGGCCAGCGATATTGGACTTGG
*
195571 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCTAATAT
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
*
195636 GCTGATTCAAGGCCAGCGATATTAGACTTGG
66 GCTGATTCAAGGCCAGCGATATTGGACTTGG
*
195667 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGACAAAGGTGCCAATAT
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
195731 GCTGATTCAAGGCCAGCGATATTGGACTTGG
66 GCTGATTCAAGGCCAGCGATATTGGACTTGG
* *
195762 AGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
195806 GGTGCCAATG
Statistics
Matches: 464, Mismatches: 39, Indels: 42
0.85 0.07 0.08
Matches are distributed among these distances:
89 1 0.00
90 1 0.00
92 1 0.00
93 34 0.07
94 2 0.00
95 136 0.29
96 210 0.45
97 2 0.00
98 1 0.00
99 1 0.00
100 1 0.00
103 38 0.08
104 36 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (96 bp):
AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
GCTGATTCAAGGCCAGCGATATTGGACTTGG
Found at i:195891 original size:92 final size:92
Alignment explanation
Indices: 195717--196821 Score: 1776
Period size: 92 Copynumber: 12.1 Consensus size: 92
195707 TAAAGATGAC
* * * * *
195717 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
195776 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
* *
195803 AAAGGTGCCAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
195868 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
* *
195895 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGATGAATATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
195960 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
195987 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
196052 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
** * * **
196079 GGAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGATTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGATGCCAATA
*
196144 TGCTGATTCAAGGCCAGCGATATTGGACTT
63 TGCTGATTCAAGGCCAGCAATATTGGACTT
** * * *
196174 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATAGGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
196239 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
*
196266 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
196331 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
*
196358 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
196423 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
*
196450 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
196515 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
* * *
196542 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-GAGGTGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
196606 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
196633 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
196698 TGATTCAAGGCCAGCAACATTGGACTT
66 TGATTCAAGGCCAGCAATATTGGACTT
* * * *
196725 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGA-CAAGGTGCCAATATA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGATGCCAATATG
* *
196789 CTAATTCAAGGCCAGCGATATTGGACTT
65 CTGATTCAAGGCCAGCAATATTGGACTT
196817 AAAGG
1 AAAGG
196822 AAGATGCCAC
Statistics
Matches: 958, Mismatches: 50, Indels: 16
0.94 0.05 0.02
Matches are distributed among these distances:
86 39 0.04
89 1 0.00
91 89 0.09
92 737 0.77
93 5 0.01
95 87 0.09
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
TGATTCAAGGCCAGCAATATTGGACTT
Found at i:196532 original size:22 final size:22
Alignment explanation
Indices: 196507--196572 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
196497 ATGAAGATGC
196507 CAATATGCTGATTCAAGGCCAG
1 CAATATGCTGATTCAAGGCCAG
* *
196529 CAATAT--TGGACTTAAAGG--TG
1 CAATATGCT-GA-TTCAAGGCCAG
196549 CCAATATGCTGATTCAAGGCCAG
1 -CAATATGCTGATTCAAGGCCAG
196572 C
1 C
196573 TACATTGGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
20 2 0.06
21 14 0.42
22 15 0.45
23 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (22 bp):
CAATATGCTGATTCAAGGCCAG
Found at i:196567 original size:21 final size:21
Alignment explanation
Indices: 196504--196567 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
196494 AAGATGAAGA
196504 TGCCAATATGCTGATTCAAGG
1 TGCCAATATGCTGATTCAAGG
* *
196525 -CCAGCAATAT--TGGACTTAAAGG
1 TGC--CAATATGCT-GA-TTCAAGG
196547 TGCCAATATGCTGATTCAAGG
1 TGCCAATATGCTGATTCAAGG
196568 CCAGCTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
20 2 0.06
21 14 0.44
22 14 0.44
23 2 0.06
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (21 bp):
TGCCAATATGCTGATTCAAGG
Found at i:196867 original size:32 final size:32
Alignment explanation
Indices: 196826--196986 Score: 193
Period size: 32 Copynumber: 5.0 Consensus size: 32
196816 TAAAGGAAGA
*
196826 TGCCACCAACTTGTGTGGGCTTTTG-AGGGGAT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGGG-T
* *
196858 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
1 TGCCACCAACTTGTGTGGGCTTTTG-AAAGGGT
* *
196891 TGCCACCAACTTGTGTGGGCTTTGGGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
*
196923 TGCCACCGACTTGTGTGGGC-TTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTG-AAAGGGT
* *
196955 TGCCATCGACTTGTGTGGGC-TTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTG-AAAGGGT
196987 GAAAGATGCC
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
31 3 0.03
32 85 0.73
33 25 0.22
34 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (32 bp):
TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
Found at i:196935 original size:65 final size:65
Alignment explanation
Indices: 196826--196978 Score: 229
Period size: 65 Copynumber: 2.4 Consensus size: 65
196816 TAAAGGAAGA
* *
196826 TGCCACCAACTTGTGTGGGCTTT-TGAGGGGATTGCCACCAACTTGTGTGGGCTTTAGAAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGGGAAGGGATTGCCACCAACTTGTGTGGGCTTT-GAAAAAGG
196890 T
65 T
* *
196891 TGCCACCAACTTGTGTGGGCTTTGGGAAGGG-TTGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGGGAAGGGATTGCCACCAACTTGTGTGGGCTTTGAAAAAGGT
* *
196955 TGCCATCGACTTGTGTGGGCTTTG
1 TGCCACCAACTTGTGTGGGCTTTG
196979 AAAAGGGTGA
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
64 30 0.37
65 46 0.57
66 5 0.06
ACGTcount: A:0.18, C:0.19, G:0.33, T:0.30
Consensus pattern (65 bp):
TGCCACCAACTTGTGTGGGCTTTGGGAAGGGATTGCCACCAACTTGTGTGGGCTTTGAAAAAGGT
Found at i:197097 original size:100 final size:97
Alignment explanation
Indices: 196989--197481 Score: 406
Period size: 100 Copynumber: 5.0 Consensus size: 97
196979 AAAAGGGTGA
196989 AAGATGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCAC-GATGTTGTGGACTTTAAAAGG
1 AAGATGCCACGAAGTTGTGGACTTAAAA-GAACAAGGTGCCACGGA-GTTGTGGAC-TTAAAA-G
* *
197053 GAAAAAGAGTGCCACGGAGTTATGGGCTTTGAAAAG
62 GAAAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
* * * *
197089 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGG
1 AAGATGCCACGAAGTTGTGGACTTAAAA-GAACAAGGTGCCACGGAGTTGTGGAC-TTAAAA-GG
*
197154 AAAAAGAGTGCCACAGAGTTGTGGACTTTGAAGGAA-
63 AAAAAGAGTGCCACGGAGTTGTGGACTTTGAA--AAG
* ** * *
197190 AGAGATGCCACGGAGTTGTAGG-CTTTGAA-AAGAAGGTGCCACGGAGTCGTGGACTTAAAAGGA
1 A-AGATGCCACGAAGTTGT-GGACTTAAAAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
197253 ACAAG-GTGCCACGGGGTTGTGGACTTT-AAAAGGG
64 AAAAGAGTGCCACGGAGTTGTGGACTTTGAAAA--G
* * *
197287 AAAAAGAGTGCCAC-AGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAG
1 ---AAGA-TGCCACGA-AGTTGTGGAC-TT-AAAAGAACAAGGTGCCACGGAGTTGTGGACTTAA
* * *
197351 GAGG-AAAAGA-TGCCACTGAGTTGTGGACTTTGGAAAG
59 AAGGAAAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
** * ** *
197388 -AGATGCCACTGAA-TTGTGGACTT-TGAG-ACAAGATGCCACTAAGTCGTGGACTTTAAGAAGG
1 AAGATGCCAC-GAAGTTGTGGACTTAAAAGAACAAGGTGCCACGGAGTTGTGGAC-TTAA-AAGG
* * *
197449 --AAAGA-TGCCACTGAGTCGTGGACTTTGAGAAG
63 AAAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
197481 A
1 A
197482 GATTTAAAGA
Statistics
Matches: 328, Mismatches: 41, Indels: 54
0.78 0.10 0.13
Matches are distributed among these distances:
92 19 0.06
93 34 0.10
94 5 0.02
95 2 0.01
96 15 0.05
97 24 0.07
98 8 0.02
99 11 0.03
100 124 0.38
101 5 0.02
102 47 0.14
103 34 0.10
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (97 bp):
AAGATGCCACGAAGTTGTGGACTTAAAAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAA
AAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
Found at i:197139 original size:133 final size:135
Alignment explanation
Indices: 196993--197340 Score: 541
Period size: 133 Copynumber: 2.6 Consensus size: 135
196983 GGGTGAAAGA
** *
196993 TGCCACGAAGTTGTGGAC-TTAAAA-GGAACAAG-GTGCCAC-GATGTTGTGGACTTTAAAAGGG
1 TGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGA-GTTGTGGACTTTAAAA-GG
*
197054 AAAAAGAGTGCCACGGAGTTATGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGG
64 AAAAAGAGTGCCACGGAGTTATAGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGG
197119 AACAAGG
129 AACAAGG
*
197126 TGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGACTTT-GAAGGAA
1 TGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGACTTTAAAAGGAA
* *
197190 AGAGA-TGCCACGGAGTTGTAGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
66 AAAGAGTGCCACGGAGTTATAGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
197254 CAAGG
131 CAAGG
*
197259 TGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAA-GA
1 TGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGACTTT-AAAAGGA
197323 AAAAG-GTGCCACGGAGTT
65 AAAAGAGTGCCACGGAGTT
197341 GTGGACTTAG
Statistics
Matches: 198, Mismatches: 10, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
133 134 0.68
134 32 0.16
135 11 0.06
136 19 0.10
137 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.20
Consensus pattern (135 bp):
TGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGACTTTAAAAGGAA
AAAGAGTGCCACGGAGTTATAGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
CAAGG
Found at i:197394 original size:30 final size:30
Alignment explanation
Indices: 197052--197475 Score: 195
Period size: 33 Copynumber: 13.0 Consensus size: 30
197042 ACTTTAAAAG
* * *
197052 GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
1 GGAAAAAGA-TGCCACTGAGTTGTGGACTTT
* * * * *
197083 GAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAA
1 GGAAA-AAGATGCCACTGAGTTGTGGACTT---T
* * * *
197117 GGAACAAGGTGCCACGGGGTTGTGGACTTT
1 GGAAAAAGATGCCACTGAGTTGTGGACTTT
*
197147 AAAAGGGAAAAAGAGTGCCACAGAGTTGTGGACTTT
1 -----GGAAAAAGA-TGCCACTGAGTTGTGGACTTT
* *
197183 GAAGGAAAGAGATGCCACGGAGTTGTAGG-CTTT
1 ---GGAAAAAGATGCCACTGAGTTGT-GGACTTT
* * * * *
197216 GAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAA
1 GGAAA-AAGATGCCACTGAGTTGTGGACTT---T
* * * *
197250 GGAACAAGGTGCCACGGGGTTGTGGACTTT
1 GGAAAAAGATGCCACTGAGTTGTGGACTTT
* *
197280 AAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 -----GGAAAAAGA-TGCCACTGAGTTGTGGACTTT
* * *
197316 GAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTA
1 G----GAAAAAGATGCCACTGAGTTGTGGACTTT
197350 GGAGGAAAAGATGCCACTGAGTTGTGGACTTT
1 GGA--AAAAGATGCCACTGAGTTGTGGACTTT
* *
197382 GGAAAGAGATGCCACTGAATTGTGGACTTT
1 GGAAAAAGATGCCACTGAGTTGTGGACTTT
* * *
197412 -GAGACAAGATGCCACTAAGTCGTGGACTTT
1 GGA-AAAAGATGCCACTGAGTTGTGGACTTT
* *
197442 AAGAAGGAAAGATGCCACTGAGTCGTGGACTTT
1 -GGAA--AAAGATGCCACTGAGTTGTGGACTTT
197475 G
1 G
197476 AGAAGAGATT
Statistics
Matches: 309, Mismatches: 51, Indels: 65
0.73 0.12 0.15
Matches are distributed among these distances:
29 2 0.01
30 55 0.18
31 41 0.13
32 32 0.10
33 85 0.28
34 36 0.12
35 21 0.07
36 37 0.12
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (30 bp):
GGAAAAAGATGCCACTGAGTTGTGGACTTT
Found at i:197458 original size:33 final size:31
Alignment explanation
Indices: 197356--197481 Score: 125
Period size: 30 Copynumber: 4.0 Consensus size: 31
197346 CTTAGGAGGA
* * *
197356 AAAGATGCCACTGAGTTGTGGACTTTGGAA-
1 AAAGATGCCACTAAGTCGTGGACTTTAGAAG
* *
197386 AGAGATGCCACTGAA-TTGTGGACTTT-G-AG
1 AAAGATGCCACT-AAGTCGTGGACTTTAGAAG
197415 ACAAGATGCCACTAAGTCGTGGACTTTAAGAAGG
1 A-AAGATGCCACTAAGTCGTGGACTTT-AGAA-G
*
197449 AAAGATGCCACTGAGTCGTGGACTTTGAGAAG
1 AAAGATGCCACTAAGTCGTGGACTTT-AGAAG
197481 A
1 A
197482 GATTTAAAGA
Statistics
Matches: 82, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
28 1 0.01
29 4 0.05
30 42 0.51
31 1 0.01
32 3 0.04
33 29 0.35
34 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (31 bp):
AAAGATGCCACTAAGTCGTGGACTTTAGAAG
Found at i:197610 original size:16 final size:17
Alignment explanation
Indices: 197579--197616 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
197569 GATGCAAAAA
* *
197579 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
197596 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
197612 ATGAT
1 ATGAT
197617 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:205737 original size:13 final size:13
Alignment explanation
Indices: 205719--205743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205709 CAAAGATCAG
205719 TGTATCGATACAA
1 TGTATCGATACAA
205732 TGTATCGATACA
1 TGTATCGATACA
205744 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:205810 original size:19 final size:18
Alignment explanation
Indices: 205786--205883 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
205776 TAGCTTACAT
205786 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
205805 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
205818 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
205837 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
205850 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
205870 TGTATCGATACAAA
1 TGTATCGATACAAA
205884 TCATTGGAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:205822 original size:32 final size:32
Alignment explanation
Indices: 205781--205881 Score: 184
Period size: 32 Copynumber: 3.1 Consensus size: 32
205771 GGCAGTAGCT
*
205781 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
205813 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
205845 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
205878 TACA
1 TACA
205882 AATCATTGGA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 52 0.78
33 15 0.22
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:205823 original size:13 final size:13
Alignment explanation
Indices: 205805--205861 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
205795 ACAAAACTTA
205805 TGTATCGATACAT
1 TGTATCGATACAT
205818 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
205836 ATGTATCGATACAT
1 -TGTATCGATACAT
205850 TGTATCGATACA
1 TGTATCGATACA
205862 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Done.