Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1763736
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 14
Found at i:624420 original size:54 final size:54
Alignment explanation
Indices: 624340--624474 Score: 252
Period size: 54 Copynumber: 2.5 Consensus size: 54
624330 GTATTTTTTC
*
624340 TTTAAAGCCCACAACTCTGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
624394 TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
*
624448 TTTAAAGCCCACAACTTCGTGGCACCT
1 TTTAAAGCCCACAACTCCGTGGCACCT
624475 TTTTCTGTTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.31
Consensus pattern (54 bp):
TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
Found at i:624491 original size:34 final size:34
Alignment explanation
Indices: 624429--624942 Score: 461
Period size: 34 Copynumber: 15.4 Consensus size: 34
624419 CTACAACTTT
* *
624429 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTTC
1 GTGGCACTCT-TTT-TC-TTTTAAAGCCCACAACTCC
624466 GTGGCAC-CTTTTTCTGTTTAAAGCCCACAACTCC
1 GTGGCACTCTTTTTCT-TTTAAAGCCCACAACTCC
*
624500 GTGGCTCTCTTTTTCCCTTTTCAAAGCCCACAACTCC
1 GTGGCACTCTTTTT--CTTTT-AAAGCCCACAACTCC
*
624537 GTGGCAC-CTTTTTCTTTTTACAGCCCACAACTCC
1 GTGGCACTCTTTTTC-TTTTAAAGCCCACAACTCC
*
624571 GTGGCACTCTTTTTCCCCTGTTAAAGCCCACAACTCC
1 GTGGCACTCTTTTT---CTTTTAAAGCCCACAACTCC
*
624608 GTGGCAC-C---TTCTTTTCAATGCCCACAACTCC
1 GTGGCACTCTTTTTCTTTT-AAAGCCCACAACTCC
* * *
624639 GTGGCAC-C-----CTTTT-AAGTCCACGACTAC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
* *
624666 GTGGCACTC-TTTTCCTTTAAAGCCCACAACTAC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
* *
624699 GTGGCACTCTTTTCCTTCT-AAGCCCACAACTCC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
*
624732 GTAGGCACTCTTTTTCCTTCT-AAGCCCACAACTCC
1 GT-GGCACTCTTTTT-CTTTTAAAGCCCACAACTCC
* *
624767 GTGGCACTCTTTTTCCTTCT-AAGCCCACGACTCC
1 GTGGCACTCTTTTT-CTTTTAAAGCCCACAACTCC
* *
624801 GTGGCAC-C-----CTTTT-AAGTCCACGACTCC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
*
624828 GTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCC
1 GTGGCACTCTTTTT-CTTTTAAAGCCCACAACTCC
624862 GTGGCACTCTTTTTTCCCTTTTAAAGCCCACAACTCC
1 GTGGCACTC-TTTTT--CTTTTAAAGCCCACAACTCC
* * * *
624899 GTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
624932 GTGGCA-TCTTT
1 GTGGCACTCTTT
624943 CACCCTTTCT
Statistics
Matches: 413, Mismatches: 33, Indels: 66
0.81 0.06 0.13
Matches are distributed among these distances:
27 41 0.10
28 2 0.00
29 5 0.01
30 4 0.01
31 22 0.05
32 4 0.01
33 66 0.16
34 126 0.31
35 49 0.12
36 18 0.04
37 75 0.18
38 1 0.00
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.32
Consensus pattern (34 bp):
GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
Found at i:624540 original size:71 final size:69
Alignment explanation
Indices: 624429--624905 Score: 452
Period size: 71 Copynumber: 7.1 Consensus size: 69
624419 CTACAACTTT
* * *
624429 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTTCGTGGCACCTTTTTCTGTTTAAAGCCCAC
1 GTGGCACTCTTTTTCCC-TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCAC
624494 AACTCC
64 AACTCC
* *
624500 GTGGCTCTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTACAGCCCAC
1 GTGGCACTCTTTTTCCC-TTTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCAC
624565 AACTCC
64 AACTCC
*
624571 GTGGCACTCTTTTTCCCCTGTT-AAAGCCCACAACTCCGTGGCACC---TTCTTTTCAATGCCCA
1 GTGGCACTCTTTTT-CCCT-TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAAGCCCA
624632 CAACTCC
63 CAACTCC
* * * * *
624639 GTGGCA--------CCCTTT-TAAGTCCACGACTACGTGGCA-CTCTTTTCCTTTAAAGCCCACA
1 GTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTAAAGCCCACA
*
624694 ACTAC
65 ACTCC
* *
624699 GTGGCACTC-TTTT-CC-TTCTAAGCCCACAACTCCGTAGGCACTCTTTTTCCTTCT-AAGCCCA
1 GTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGT-GGCAC-CTTTTT-CTTTTAAAGCCCA
624760 CAACTCC
63 CAACTCC
* * * *
624767 GTGGCACTCTTTTT-CC-TTCTAAGCCCACGACTCCGTGGCACC-----CTTTT-AAGTCCACGA
1 GTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAA
624824 CTCC
66 CTCC
*
624828 GTGGCACTCTTTTT-CC-TTCTAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCC
1 GTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCAC-C-TTTTT--CTTTTAAAGCCC
624891 ACAACTCC
62 ACAACTCC
624899 GTGGCAC
1 GTGGCAC
624906 CTTGTTCTTT
Statistics
Matches: 347, Mismatches: 28, Indels: 62
0.79 0.06 0.14
Matches are distributed among these distances:
57 1 0.00
58 19 0.05
59 4 0.01
60 19 0.05
61 62 0.18
62 1 0.00
65 2 0.01
66 16 0.05
67 9 0.03
68 53 0.15
69 30 0.09
70 5 0.01
71 120 0.35
72 6 0.02
ACGTcount: A:0.19, C:0.36, G:0.13, T:0.31
Consensus pattern (69 bp):
GTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAA
CTCC
Found at i:624704 original size:162 final size:161
Alignment explanation
Indices: 624490--624941 Score: 571
Period size: 162 Copynumber: 2.8 Consensus size: 161
624480 TGTTTAAAGC
* * *
624490 CCACAACTCCGTGGCTCTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 CCACGACTCCGTGGCACTCTTTTT-CC-TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
624555 TACAGCCCACAACTCCGTGGCACTCTTTTTCCCCTGT-TAAAGCCCACAACTCCGTGGCAC-CTT
63 TA-AGCCCACAACTCCGTGGCACTCTTTTT--CCT-TCT-AAGCCCACAACTCCGTGGCACTCTT
624618 CTT-TTC-AATGCCCACAACTCCGTGGCACCCTTTTAAGT
123 CTTCTTCTAA-GCCCACAACTCCGTGGCACCCTTTTAAGT
* * *
624656 CCACGACTACGTGGCACTC-TTTTCCTTTAAAGCCCACAACTACGTGGCA-CTCTTTTCCTTCTA
1 CCACGACTCCGTGGCACTCTTTTTCCTTTAAAGCCCACAACTCCGTGGCACCT-TTTTCCTTTTA
*
624719 AGCCCACAACTCCGTAGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
65 AGCCCACAACTCCGT-GGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTCTT-CT
*
624784 TCTAAGCCCACGACTCCGTGGCACCCTTTTAAGT
128 TCTAAGCCCACAACTCCGTGGCACCCTTTTAAGT
624818 CCACGACTCCGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTT
1 CCACGACTCCGTGGCACTCTTTTTCCTT-TAAAGCCCACAACTCCGTGGCAC-C-TTTTT-CCTT
* * * * *
624882 TTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTT
62 TT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTT
624942 TCACCCTTTC
Statistics
Matches: 256, Mismatches: 16, Indels: 30
0.85 0.05 0.10
Matches are distributed among these distances:
159 22 0.09
160 9 0.04
161 17 0.07
162 90 0.35
163 32 0.12
164 7 0.03
165 36 0.14
166 27 0.11
167 16 0.06
ACGTcount: A:0.19, C:0.36, G:0.13, T:0.32
Consensus pattern (161 bp):
CCACGACTCCGTGGCACTCTTTTTCCTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAA
GCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTCTTCTTCT
AAGCCCACAACTCCGTGGCACCCTTTTAAGT
Found at i:624839 original size:27 final size:27
Alignment explanation
Indices: 624781--624840 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
624771 CACTCTTTTT
*
624781 CCTTCTAAGCCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACGACTCCGTGGCAC
*
624808 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACGACTCCGTGGCAC
*
624835 TCTTTT
1 CCTTTT
624841 TCCTTCTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACGACTCCGTGGCAC
Found at i:624861 original size:61 final size:61
Alignment explanation
Indices: 624747--624874 Score: 211
Period size: 61 Copynumber: 2.1 Consensus size: 61
624737 CACTCTTTTT
* *
624747 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
* *
624808 CCTTTTAAGTCCACGACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
*
624869 TCTTTT
1 CCTTTT
624875 TTCCCTTTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.17, C:0.38, G:0.14, T:0.30
Consensus pattern (61 bp):
CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
Found at i:624965 original size:71 final size:71
Alignment explanation
Indices: 624805--624962 Score: 198
Period size: 70 Copynumber: 2.3 Consensus size: 71
624795 GACTCCGTGG
* * *
624805 CACCCTTTT-AAGTCCACGACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCCGTGGCAC
624869 TCTTTT
66 TCTTTT
** * * * *
624875 TTCCCTTTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCCGTGGCAC
624938 TC-TTT
66 TCTTTT
624943 CACCCTTTCTAAAGCCCACA
1 CACCCTTT-TAAAGCCCACA
624963 CAAGTCGGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
68 9 0.12
69 13 0.17
70 34 0.45
71 19 0.25
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (71 bp):
CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCCGTGGCAC
TCTTTT
Found at i:624987 original size:33 final size:33
Alignment explanation
Indices: 624946--625188 Score: 340
Period size: 33 Copynumber: 7.5 Consensus size: 33
624936 CATCTTTCAC
624946 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
624978 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
625011 CCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
625044 CCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATC
1 CCTT-CTCTAAAGCCCACACAAGTCGGTGGCAA-A
* *
625079 CCTTC-CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
625111 CCTTC-CCAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
625142 CCATTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
625175 CCTT-TCT-AAGCCCA
1 CCTTCTCTAAAGCCCA
625189 ATATAGCTGG
Statistics
Matches: 196, Mismatches: 8, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
30 7 0.04
31 6 0.03
32 42 0.21
33 105 0.54
34 32 0.16
35 4 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:625036 original size:67 final size:66
Alignment explanation
Indices: 624944--625188 Score: 376
Period size: 67 Copynumber: 3.8 Consensus size: 66
624934 GGCATCTTTC
*
624944 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCTTCTCTAAAGCCCACACAAGTTGGTGGC
625008 AA
65 AA
625010 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCCTCTAAAGCCCACACAAGTTGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTT-CTCTAAAGCCCACACAAGTTGGTGGC
625075 AA
65 AA
* * *
625077 TCCCTTC-CCAAAGCCCACACAAGTCGGTGGCAACCCTTC-CCAAAGCCCACACAAGTTGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA-CCTTCTCTAAAGCCCACACAAGTTGGTGGC
625140 -A
65 AA
*
625141 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCTT-TCT-AAGCCCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTCTAAAGCCCA
625189 ATATAGCTGG
Statistics
Matches: 166, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
63 7 0.04
64 11 0.07
65 48 0.29
66 38 0.23
67 62 0.37
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (66 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTCTAAAGCCCACACAAGTTGGTGGCA
A
Found at i:625171 original size:98 final size:100
Alignment explanation
Indices: 624950--625178 Score: 360
Period size: 98 Copynumber: 2.3 Consensus size: 100
624940 TTTCACCCTT
*
624950 TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCCAAAGCCCACACAAGTCGGTGGCAAACCCT
*
625015 TCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCC
66 TCTCCAAAGCCCACACAAGTCGGTGGCAACCTTCC
* *
625050 TCTAAAGCCCACACAAGTTGGTGGCAATCCCTTC-CCAAAGCCCACACAAGTCGGTGGC-AACCC
1 TCTAAAGCCCACACAAGTCGGTGGCAA-ACCTTCTCCAAAGCCCACACAAGTCGGTGGCAAACCC
*
625113 TTC-CCAAAGCCCACACAAGTTGGTGGCAACCATT-C
65 TTCTCCAAAGCCCACACAAGTCGGTGGCAACC-TTCC
625148 TCTAAAGCCCACACAAGTCGGTGGC-AACCTT
1 TCTAAAGCCCACACAAGTCGGTGGCAAACCTT
625179 TCTAAGCCCA
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
96 4 0.03
97 1 0.01
98 51 0.43
99 10 0.08
100 49 0.41
101 5 0.04
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (100 bp):
TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCCAAAGCCCACACAAGTCGGTGGCAAACCCT
TCTCCAAAGCCCACACAAGTCGGTGGCAACCTTCC
Found at i:625239 original size:49 final size:49
Alignment explanation
Indices: 625181--625618 Score: 575
Period size: 49 Copynumber: 9.0 Consensus size: 49
625171 GCAACCTTTC
* *
625181 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
625230 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
625278 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
625321 TAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * * *
625373 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
625422 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
625471 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
625520 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCAACTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
625569 TAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
625618 T
1 T
625619 TTTCTCATCT
Statistics
Matches: 341, Mismatches: 39, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
43 39 0.11
45 1 0.00
48 44 0.13
49 214 0.63
50 3 0.01
52 40 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:625731 original size:67 final size:65
Alignment explanation
Indices: 625557--625744 Score: 222
Period size: 67 Copynumber: 2.9 Consensus size: 65
625547 AGCATATTGG
* * *
625557 CATCTTCAACTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCATCTTCAT--CTTTT
1 CATC-TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCACTTTT
625620 T
65 T
* * * * * *
625621 --TCTCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTC
1 CATCTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCACTTTT-
625684 T
65 T
* *
625685 CATCATCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCA
1 CATC-TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCA
625745 TCTCTAAAAC
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
61 44 0.43
62 2 0.02
63 5 0.05
64 1 0.01
66 2 0.02
67 48 0.47
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (65 bp):
CATCTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCACTTTTT
Found at i:628216 original size:31 final size:31
Alignment explanation
Indices: 628178--628320 Score: 179
Period size: 31 Copynumber: 4.6 Consensus size: 31
628168 TTTAAAAAAA
*
628178 AAAGTCCACGACTTAGTGGCAATCTCT-TCTC
1 AAAGTCCACGACTCAGTGGC-ATCTCTGTCTC
628209 AAAGTCCACGACTCAGTGGCAATCTCTGT-TC
1 AAAGTCCACGACTCAGTGGC-ATCTCTGTCTC
*
628240 AAAGTCCACGACGCAGTGGCATC-CT-TCTC
1 AAAGTCCACGACTCAGTGGCATCTCTGTCTC
*
628269 TTTAAAGTCCACGACTCAGTGGCAT-TTTGTCTC
1 ---AAAGTCCACGACTCAGTGGCATCTCTGTCTC
628302 AAAGTCCACGACTCAGTGG
1 AAAGTCCACGACTCAGTGG
628321 TATTTTTTCT
Statistics
Matches: 101, Mismatches: 4, Indels: 15
0.84 0.03 0.12
Matches are distributed among these distances:
28 1 0.01
29 4 0.04
30 22 0.22
31 47 0.47
32 23 0.23
33 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATCTCTGTCTC
Found at i:628352 original size:93 final size:94
Alignment explanation
Indices: 628178--628353 Score: 221
Period size: 93 Copynumber: 1.9 Consensus size: 94
628168 TTTAAAAAAA
* *
628178 AAAGTCCACGACTTAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCAATCTCTGTTCAAA
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCAATCTCTCTTCAAA
* *
628243 GTCCACGACGCAGTGGCATCCTTCTCTTT
66 GCCCACAACGCAGTGGCATCCTTCTCTTT
* * * * * *
628272 AAAGTCCACGACTCAGTGGC-AT-TTTGTCTCAAAGTCCACGACTCAGTGGTATTTTTTCTTTAA
1 AAAGTCCACGACTCAGTGGCAATCTCT-TCTCAAAGTCCACGACTCAGTGGCAATCTCTCTTCAA
* *
628335 AGCCCACAACTCTGTGGCA
65 AGCCCACAACGCAGTGGCA
628354 CCTACAACTT
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
92 2 0.03
93 48 0.70
94 19 0.28
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (94 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCAATCTCTCTTCAAA
GCCCACAACGCAGTGGCATCCTTCTCTTT
Found at i:628410 original size:54 final size:54
Alignment explanation
Indices: 628330--628464 Score: 261
Period size: 54 Copynumber: 2.5 Consensus size: 54
628320 GTATTTTTTC
*
628330 TTTAAAGCCCACAACTCTGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
628384 TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
628438 TTTAAAGCCCACAACTCCGTGGCACCT
1 TTTAAAGCCCACAACTCCGTGGCACCT
628465 TTTTCTGTTT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.30
Consensus pattern (54 bp):
TTTAAAGCCCACAACTCCGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTT
Found at i:628481 original size:34 final size:33
Alignment explanation
Indices: 628437--628932 Score: 420
Period size: 34 Copynumber: 14.9 Consensus size: 33
628427 CTCTTTCCCT
628437 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
628470 TGTTTAAAGCCCACAACTCCGTGGCTCTCTTTTTCCC
1 T-TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C
628507 TTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
628541 TTTTTACAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 -TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C
628578 TTGTTAAAGCCCACAACTCCGTGGCACC---TTC
1 TT-TTAAAGCCCACAACTCCGTGGCACCTTTTTC
628609 TTTTCAAAGCCCACAACTCCGTGGCACC-----C
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* * *
628638 TTTT-AAGTCCACGACTACGTGGCA-CTCTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCT-TTTTC
* * *
628670 CTTTAAAGCCCACAACTACGTGGCACTCTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC
* *
628704 TTCT-AAGCCCACAACTCCATAGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGT-GGCAC-CTTTTT-C
* *
628739 TTCT-AAGCCCACAACTCCATGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* * *
628773 ATCT-AAGCCCACGACTCCGTGGCACC-----C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
628800 TTTT-AAGTCCACGACTCCGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
*
628834 TTCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C-TTTTT--C
*
628870 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * *
628903 TTTTTAAGTCCACAACTTCGTGGCATCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT
628933 CACCCTTTCT
Statistics
Matches: 397, Mismatches: 34, Indels: 64
0.80 0.07 0.13
Matches are distributed among these distances:
26 1 0.00
27 40 0.10
28 1 0.00
29 5 0.01
30 2 0.01
31 26 0.07
32 4 0.01
33 62 0.16
34 123 0.31
35 48 0.12
36 18 0.05
37 67 0.17
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:628527 original size:71 final size:70
Alignment explanation
Indices: 628419--628932 Score: 443
Period size: 71 Copynumber: 7.7 Consensus size: 70
628409 CTACAACTTT
* *
628419 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCAC
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCAC
628484 AACTCC
65 AACTCC
* *
628490 GTGGCTCTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTACAGCCCAC
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCAC
*
628555 AACTCT
65 AACTCC
628561 GTGGCACTCTTTTTCCCTTGTT-AAAGCCCACAACTCCGTGGCACC---TTCTTTTCAAAGCCCA
1 GTGGCACTCTTTTTCCCTT-TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAAGCCCA
628622 CAACTCC
64 CAACTCC
* * * *
628629 GTGGCA--------CCCTTTT--AAGTCCACGACTACGTGGCA-CTCTTTTCCTTTAAAGCCCAC
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTAAAGCCCAC
*
628683 AACTAC
65 AACTCC
* * *
628689 GTGGCACTC-TTTT-CC--TTCTAAGCCCACAACTCCATAGGCACTCTTTTTCCTTCT-AAGCCC
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGT-GGCAC-CTTTTT-CTTTTAAAGCCC
628749 ACAACTCC
63 ACAACTCC
* * * * * *
628757 ATGGCACTCTTTTT-CC--ATCTAAGCCCACGACTCCGTGGCACC-----CTTTT-AAGTCCACG
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACA
628813 ACTCC
66 ACTCC
*
628818 GTGGCACTCTTTTT-CC--TTCTAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCC
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TTTTT--CTTTTAAAGCC
628880 CACAACTCC
62 CACAACTCC
* * * * *
628889 GTGGCAC-CTTGTT--CTTTT-TAAGTCCACAACTTCGTGGCATCTTT
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTT
628933 CACCCTTTCT
Statistics
Matches: 374, Mismatches: 36, Indels: 69
0.78 0.08 0.14
Matches are distributed among these distances:
57 1 0.00
58 17 0.05
59 2 0.01
60 25 0.07
61 60 0.16
62 1 0.00
64 2 0.01
66 14 0.04
67 9 0.02
68 55 0.15
69 30 0.08
70 29 0.08
71 126 0.34
72 3 0.01
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.32
Consensus pattern (70 bp):
GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACA
ACTCC
Found at i:628806 original size:27 final size:27
Alignment explanation
Indices: 628776--628830 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
628766 TTTTTCCATC
628776 TAAGCCCACGACTCCGTGGCACCCTTT
1 TAAGCCCACGACTCCGTGGCACCCTTT
* *
628803 TAAGTCCACGACTCCGTGGCACTCTTT
1 TAAGCCCACGACTCCGTGGCACCCTTT
628830 T
1 T
628831 TCCTTCTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.18, C:0.36, G:0.18, T:0.27
Consensus pattern (27 bp):
TAAGCCCACGACTCCGTGGCACCCTTT
Found at i:628851 original size:61 final size:61
Alignment explanation
Indices: 628737--628864 Score: 193
Period size: 61 Copynumber: 2.1 Consensus size: 61
628727 CACTCTTTTT
* *
628737 CCTTCTAAGCCCACAACTCCATGGCACTCTTTTTCCATCTAAGCCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCATGGCACTCTTTTTCCATCTAAGCCCACAACTCCGTGGCAC
* * * *
628798 CCTTTTAAGTCCACGACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCATGGCACTCTTTTTCCATCTAAGCCCACAACTCCGTGGCAC
*
628859 TCTTTT
1 CCTTTT
628865 TTCCCTTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.19, C:0.38, G:0.13, T:0.30
Consensus pattern (61 bp):
CCTTTTAAGCCCACAACTCCATGGCACTCTTTTTCCATCTAAGCCCACAACTCCGTGGCAC
Found at i:628955 original size:71 final size:71
Alignment explanation
Indices: 628795--628952 Score: 198
Period size: 70 Copynumber: 2.3 Consensus size: 71
628785 GACTCCGTGG
* * *
628795 CACCCTTTT-AAGTCCACGACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCCGTGGCAC
628859 TCTTTT
66 TCTTTT
** * * * *
628865 TTCCCTTTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCCGTGGCAC
628928 TC-TTT
66 TCTTTT
628933 CACCCTTTCTAAAGCCCACA
1 CACCCTTT-TAAAGCCCACA
628953 CAAGTCGGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
68 9 0.12
69 13 0.17
70 34 0.45
71 19 0.25
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (71 bp):
CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCCGTGGCAC
TCTTTT
Found at i:628977 original size:33 final size:33
Alignment explanation
Indices: 628936--629145 Score: 290
Period size: 33 Copynumber: 6.5 Consensus size: 33
628926 CATCTTTCAC
628936 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
628968 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
629001 CCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
629034 CCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATC
1 CCTT-CTCTAAAGCCCACACAAGTCGGTGGCAA-A
* *
629069 CCTTC-CGAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
629101 CCTTC-CCAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
629132 CCTT-TCT-AAGCCCA
1 CCTTCTCTAAAGCCCA
629146 ATATAGCTGG
Statistics
Matches: 164, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
30 7 0.04
31 6 0.04
32 36 0.22
33 79 0.48
34 32 0.20
35 4 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:629026 original size:67 final size:66
Alignment explanation
Indices: 628934--629145 Score: 317
Period size: 67 Copynumber: 3.3 Consensus size: 66
628924 GGCATCTTTC
*
628934 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGCA
628999 A
66 A
629000 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCTTCCTCTAAAGCCCACACAAGTTGGTGG
1 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCAAACCTT-CTCTAAAGCCCACACAAGTTGGTGG
629064 CAA
64 CAA
* * * * *
629067 TCCCTTCCGAAAGCCCACACAAGTCGGTGGCAACCCTTC-CCAAAGCCCACACAAGTTGGTGGC-
1 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGCA
629130 A
66 A
629131 A-CCTTTCT-AAGCCCA
1 ACCCTTTCTAAAGCCCA
629146 ATATAGCTGG
Statistics
Matches: 134, Mismatches: 9, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
62 7 0.05
63 5 0.04
64 1 0.01
65 23 0.17
66 36 0.27
67 62 0.46
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.18
Consensus pattern (66 bp):
ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGCA
A
Found at i:629050 original size:100 final size:98
Alignment explanation
Indices: 628940--629135 Score: 313
Period size: 100 Copynumber: 2.0 Consensus size: 98
628930 TTTCACCCTT
*
628940 TCTAAAGCCCACACAAGTCGGTGGCAA-ACCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCC
1 TCTAAAGCCCACACAAGTCGGTGGCAATACCTTC-CGAAAGCCCACACAAGTCGGTGGC-AACCC
*
629004 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCC
64 TTC-CCAAAGCCCACACAAGTCGGTGGCAACCTTCC
* *
629040 TCTAAAGCCCACACAAGTTGGTGGCAATCCCTTCCGAAAGCCCACACAAGTCGGTGGCAACCCTT
1 TCTAAAGCCCACACAAGTCGGTGGCAATACCTTCCGAAAGCCCACACAAGTCGGTGGCAACCCTT
*
629105 CCCAAAGCCCACACAAGTTGGTGGCAACCTT
66 CCCAAAGCCCACACAAGTCGGTGGCAACCTT
629136 TCTAAGCCCA
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
98 28 0.31
99 8 0.09
100 49 0.54
101 5 0.06
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.18
Consensus pattern (98 bp):
TCTAAAGCCCACACAAGTCGGTGGCAATACCTTCCGAAAGCCCACACAAGTCGGTGGCAACCCTT
CCCAAAGCCCACACAAGTCGGTGGCAACCTTCC
Found at i:629196 original size:49 final size:49
Alignment explanation
Indices: 629138--629477 Score: 433
Period size: 49 Copynumber: 7.0 Consensus size: 49
629128 GCAACCTTTC
* *
629138 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
629187 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
629235 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
629278 TAAATCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * *
629330 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
629379 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
629428 TAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
629477 T
1 T
629478 TTTCTCATCT
Statistics
Matches: 254, Mismatches: 28, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
43 38 0.15
45 1 0.00
48 44 0.17
49 129 0.51
50 3 0.01
52 39 0.15
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:629293 original size:43 final size:43
Alignment explanation
Indices: 629184--629372 Score: 189
Period size: 43 Copynumber: 4.1 Consensus size: 43
629174 GCACCTTCAT
*
629184 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAATCCAATATAGCTGGCCTTGAATCAGCACATTGG-----CAC
* *
629232 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAATCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
629275 CTTTAAATCCAATATAGCTGGCTTTGAATCAGCATATTGGCAC
1 CTTTAAATCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
629318 CTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
1 C-TTT--A-----AA-TCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
629370 CTT
1 CTT
629373 CACCTTTAAG
Statistics
Matches: 123, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
43 43 0.35
44 3 0.02
46 1 0.01
48 39 0.32
51 4 0.03
52 33 0.27
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (43 bp):
CTTTAAATCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:629369 original size:95 final size:93
Alignment explanation
Indices: 629184--629466 Score: 374
Period size: 91 Copynumber: 3.0 Consensus size: 93
629174 GCACCTTCAT
* *
629184 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TCACCTTTAAGTCCAATGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGT
629247 AGCTGGCCTTGAATCAGCACATTGGCAC
66 AGCTGGCCTTGAATCAGCACATTGGCAC
* *
629275 CTTTAAATCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT-CATCTTTAAGTCCAAT
*
629340 GTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAC
64 GTAGCTGGCCTTGAATCAGCACATTGG------CAC
* * * * *
629376 CTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATC-TTCATCTTTAAGTTCAATGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGT
*
629440 AGCTGGCCTTGAATCAGCATATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
629467 TCTTCATCTT
Statistics
Matches: 168, Mismatches: 14, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
91 41 0.24
92 2 0.01
94 1 0.01
95 41 0.24
98 40 0.24
99 2 0.01
101 41 0.24
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (93 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:629590 original size:67 final size:63
Alignment explanation
Indices: 629416--629602 Score: 216
Period size: 61 Copynumber: 2.9 Consensus size: 63
629406 AGCATATTGG
* *
629416 CATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTTT
1 CATC-TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTTT
* * * * * *
629480 --TCTCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTC
1 CATCTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCAT--CTTTT-
629543 T
63 T
* * *
629544 CATCATCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTAGCACCTTCATC
1 CATC-TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
629603 ATCTCTAAAA
Statistics
Matches: 101, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
61 45 0.45
62 2 0.02
63 5 0.05
64 1 0.01
65 1 0.01
66 2 0.02
67 45 0.45
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.39
Consensus pattern (63 bp):
CATCTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTTT
Found at i:630403 original size:13 final size:13
Alignment explanation
Indices: 630385--630409 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
630375 CATAAAATGT
630385 TGTATCGATACAA
1 TGTATCGATACAA
630398 TGTATCGATACA
1 TGTATCGATACA
630410 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:630496 original size:13 final size:13
Alignment explanation
Indices: 630478--630502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
630468 ATTACTCACA
630478 TGTATCGATACAT
1 TGTATCGATACAT
630491 TGTATCGATACA
1 TGTATCGATACA
630503 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:630567 original size:52 final size:52
Alignment explanation
Indices: 630511--630635 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
630501 CACTGATCTT
*
630511 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
630563 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
630615 TGTATCGATAAATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
630636 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:642075 original size:13 final size:13
Alignment explanation
Indices: 642057--642087 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
642047 ACAATTCATC
*
642057 ATGTATTGATACA
1 ATGTATCGATACA
642070 ATGTATCGATACA
1 ATGTATCGATACA
642083 ATGTA
1 ATGTA
642088 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:642077 original size:33 final size:33
Alignment explanation
Indices: 642035--642103 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
642025 CCGTTAGAAG
* *
642035 CAATGTATCGATACAAT-TCATCATGTATTGATA
1 CAATGTATCGATACAATGT-ACCATGTATCGATA
642068 CAATGTATCGATACAATGTACCATGTATCGATA
1 CAATGTATCGATACAATGTACCATGTATCGATA
642101 CAA
1 CAA
642104 ATAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACAATGTACCATGTATCGATA
Found at i:642176 original size:19 final size:19
Alignment explanation
Indices: 642132--642204 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
642122 CTGCCAGTTT
**
642132 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
642152 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
642171 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
642192 -ATGTATCGATACA
1 CATGTATCGATACA
642205 TCTAGGTGTG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 18 0.38
20 29 0.60
21 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:643919 original size:33 final size:33
Alignment explanation
Indices: 643820--643967 Score: 164
Period size: 33 Copynumber: 4.7 Consensus size: 33
643810 ACCCTTATCA
* * *
643820 AAGTCCACAACTCAGTGGCAT-C-TCTT-TTCC
1 AAGTCCACGACTCAATGGCATCCTTTTTCTTCC
* *
643850 AAGCCCACGACTCAATGGCAT-C-TCTTC-TCC
1 AAGTCCACGACTCAATGGCATCCTTTTTCTTCC
*
643880 AAGTCCACGACTTAATGGCATCCTTTTTCTTCC
1 AAGTCCACGACTCAATGGCATCCTTTTTCTTCC
* *
643913 AAGTCCACGACTTATTGGCATCCTTTTTCTTCC
1 AAGTCCACGACTCAATGGCATCCTTTTTCTTCC
* *
643946 AAATCCATGACTCAATGGCATC
1 AAGTCCACGACTCAATGGCATC
643968 TCTTCTCTAA
Statistics
Matches: 103, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
30 45 0.44
31 1 0.01
32 4 0.04
33 53 0.51
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.31
Consensus pattern (33 bp):
AAGTCCACGACTCAATGGCATCCTTTTTCTTCC
Found at i:643998 original size:30 final size:30
Alignment explanation
Indices: 643791--643983 Score: 172
Period size: 30 Copynumber: 6.3 Consensus size: 30
643781 CTTTTTTCAA
** * * *
643791 AAGTCCACGACTCTGTGGCA-CCCTTATCA
1 AAGTCCACGACTCAATGGCATCTCTTCTCC
* * *
643820 AAGTCCACAACTCAGTGGCATCTCTTTTCC
1 AAGTCCACGACTCAATGGCATCTCTTCTCC
*
643850 AAGCCCACGACTCAATGGCATCTCTTCTCC
1 AAGTCCACGACTCAATGGCATCTCTTCTCC
* *
643880 AAGTCCACGACTTAATGGCATCCTTTTTCTTCC
1 AAGTCCACGACTCAATGGCAT-C-TCTTC-TCC
* * *
643913 AAGTCCACGACTTATTGGCATCCTTTTTCTTCC
1 AAGTCCACGACTCAATGGCAT-C-TCTTC-TCC
* * *
643946 AAATCCATGACTCAATGGCATCTCTTCTCT
1 AAGTCCACGACTCAATGGCATCTCTTCTCC
643976 AAGTCCAC
1 AAGTCCAC
643984 AACTTCGTGG
Statistics
Matches: 139, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
29 18 0.13
30 59 0.42
31 5 0.04
32 5 0.04
33 52 0.37
ACGTcount: A:0.23, C:0.33, G:0.13, T:0.31
Consensus pattern (30 bp):
AAGTCCACGACTCAATGGCATCTCTTCTCC
Found at i:644015 original size:32 final size:33
Alignment explanation
Indices: 643975--644329 Score: 200
Period size: 34 Copynumber: 10.7 Consensus size: 33
643965 ATCTCTTCTC
643975 TAAGTCCACAACTTCGTGGCA-TCTTTCCCTTT
1 TAAGTCCACAACTTCGTGGCACTCTTTCCCTTT
* * * * *
644007 GAAGTCCACAACTCCATGGCAC-CTTTTTCTTTT
1 TAAGTCCACAACTTCGTGGCACTC-TTTCCCTTT
* *
644040 TAAAG-CCTACAAC-TCTGTGGCACCCATTTCTCTTT
1 T-AAGTCC-ACAACTTC-GTGGCACTC-TTTCCCTTT
* * * *
644075 TAAGTCCACAACTCCGTGACAC-CTTTTTCTTTT
1 TAAGTCCACAACTTCGTGGCACTC-TTTCCCTTT
* * * *
644108 TAAAGCCCACAACTACATGGCACCCATTTCCCTTT
1 T-AAGTCCACAACTTCGTGGCACTC-TTTCCCTTT
*
644143 TAAGTCCACAACTTCGTGGCA-TTTTTCCCTTT
1 TAAGTCCACAACTTCGTGGCACTCTTTCCCTTT
* * * * *
644175 TAAGTCTACAAC-TCTATGGCACCTTTTTTCTTTT
1 TAAGTCCACAACTTC-GTGGCA-CTCTTTCCCTTT
* *
644209 TAAAGCCCACAACTCCGTGGCA-TCCTTT-CCTTT
1 T-AAGTCCACAACTTCGTGGCACT-CTTTCCCTTT
*
644242 TAAGTCCACAAC-TCTGTGGCA-TC-TTCTCTTT
1 TAAGTCCACAACTTC-GTGGCACTCTTTCCCTTT
* * * *
644273 CTAAGTCTATAAC-TCTATAGCAC-CTTTTCCCTTT
1 -TAAGTCCACAACTTC-GTGGCACTC-TTTCCCTTT
644307 TAAGTCCACAAC-TCTGTGGCACT
1 TAAGTCCACAACTTC-GTGGCACT
644330 TTTTAAGTCC
Statistics
Matches: 248, Mismatches: 52, Indels: 44
0.72 0.15 0.13
Matches are distributed among these distances:
30 2 0.01
31 8 0.03
32 79 0.32
33 42 0.17
34 82 0.33
35 34 0.14
36 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.11, T:0.36
Consensus pattern (33 bp):
TAAGTCCACAACTTCGTGGCACTCTTTCCCTTT
Found at i:644052 original size:34 final size:32
Alignment explanation
Indices: 643975--644333 Score: 201
Period size: 32 Copynumber: 10.8 Consensus size: 32
643965 ATCTCTTCTC
* * * *
643975 TAAGTCCACAACTTCGTGGCATC-TTTCCCTTT
1 TAAG-CCACAACTCCGTGGCACCTTTTTCTTTT
* *
644007 GAAGTCCACAACTCCATGGCACCTTTTTCTTTT
1 TAAG-CCACAACTCCGTGGCACCTTTTTCTTTT
* **
644040 TAAAGCCTACAACTCTGTGGCACCCATTTCTCTTT
1 T-AAGCC-ACAACTCCGTGGCACCTTTTTCT-TTT
*
644075 TAAGTCCACAACTCCGTGACACCTTTTTCTTTT
1 TAAG-CCACAACTCCGTGGCACCTTTTTCTTTT
* * * * *
644108 TAAAGCCCACAACTACATGGCACCCATTTCCCTTT
1 T-AAG-CCACAACTCCGTGGCA-CCTTTTTCTTTT
* *
644143 TAAGTCCACAACTTCGTGGCA--TTTTTCCCTTT
1 TAAG-CCACAACTCCGTGGCACCTTTTT-CTTTT
* **
644175 TAAGTCTACAACTCTATGGCACCTTTTTTCTTTT
1 TAAG-CCACAACTCCGTGGCACC-TTTTTCTTTT
*
644209 TAAAGCCCACAACTCCGTGGCATCC--TTTCCTTT
1 T-AAG-CCACAACTCCGTGGCA-CCTTTTTCTTTT
* * * *
644242 TAAGTCCACAACTCTGTGGCATC-TTCTCTTTC
1 TAAG-CCACAACTCCGTGGCACCTTTTTCTTTT
* * ** * * *
644274 TAAGTCTATAACTCTATAGCACCTTTTCCCTTT
1 TAAG-CCACAACTCCGTGGCACCTTTTTCTTTT
*
644307 TAAGTCCACAACTCTGTGGCA-CTTTTT
1 TAAG-CCACAACTCCGTGGCACCTTTTT
644334 AAGTCCATAA
Statistics
Matches: 255, Mismatches: 57, Indels: 30
0.75 0.17 0.09
Matches are distributed among these distances:
31 4 0.02
32 87 0.34
33 43 0.17
34 82 0.32
35 37 0.15
36 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.37
Consensus pattern (32 bp):
TAAGCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:644087 original size:68 final size:66
Alignment explanation
Indices: 643998--644328 Score: 293
Period size: 68 Copynumber: 5.0 Consensus size: 66
643988 TCGTGGCATC
* * * *
643998 TTTCCCTTTGAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCTACAACTCTGTGGCAC
1 TTTCTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGCC-ACAACTCTGTGGCAC
644063 CCA
64 CCA
* * *
644066 TTTCTCTTTTAAGTCCACAACTCCGTGACACCTTTTTCTTTTTAAAGCCCACAACTAC-ATGGCA
1 TTTCTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAG-CCACAACT-CTGTGGCA
644130 CCCA
63 CCCA
* * * *
644134 TTTCCCTTTTAAGTCCACAACTTCGTGGCA--TTTTTCCCTTTTAAGTCTACAACTCTATGGCA-
1 TTTCTCTTTTAAGTCCACAACTCCGTGGCACCTTTTT-CCTTTTAAG-CCACAACTCTGTGGCAC
*
644196 CCT
64 CCA
* *
644199 TTTTTCTTTTTAAAGCCCACAACTCCGTGGCATCC--TTTCCTTTTAAGTCCACAACTCTGTGGC
1 TTTCTC-TTTT-AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTTAAG-CCACAACTCTGTGGC
*
644262 A-TC-
62 ACCCA
* * ** * *
644265 -TTCTCTTTCTAAGTCTATAACTCTATAGCACCTTTTCCCTTTTAAGTCCACAACTCTGTGGCAC
1 TTTCTCTTT-TAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAG-CCACAACTCTGTGGCAC
644329 TTTTTAAGTC
Statistics
Matches: 223, Mismatches: 27, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
63 2 0.01
64 17 0.08
65 40 0.18
66 25 0.11
67 48 0.22
68 88 0.39
69 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.11, T:0.37
Consensus pattern (66 bp):
TTTCTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGCCACAACTCTGTGGCACCC
A
Found at i:644338 original size:26 final size:27
Alignment explanation
Indices: 644303--644373 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
644293 CACCTTTTCC
*
644303 CTTTTAAGTCCACAACTCTGTGGCAC-
1 CTTTTAAGTCCACAACTCTATGGCACA
* * *
644329 TTTTTAAGTCCATAATTCTATGGCACA
1 CTTTTAAGTCCACAACTCTATGGCACA
644356 CTTTTAAGTCCACAACTC
1 CTTTTAAGTCCACAACTC
644374 CGTGTCACCC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 22 0.59
27 15 0.41
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCTATGGCACA
Found at i:644349 original size:59 final size:63
Alignment explanation
Indices: 644237--644360 Score: 166
Period size: 65 Copynumber: 2.0 Consensus size: 63
644227 GGCATCCTTT
*
644237 CCTTTTAAGTCCACAACTCTGTGGCATCTTCTCTTTCTAAGTCTATAACTCTATAGCAC-CTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCA---TCTCTTTCTAAGTCCATAACTCTATAGCACACTTTT
644301 C
63 C
* *
644302 CCTTTTAAGTCCACAACTCTGTGGCA-CT-TTT-TAAGTCCATAATTCTATGGCACACTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCATCTCTTTCTAAGTCCATAACTCTATAGCACACTTTT
644361 AAGTCCACAA
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
59 19 0.35
60 8 0.15
61 2 0.04
65 26 0.47
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (63 bp):
CCTTTTAAGTCCACAACTCTGTGGCATCTCTTTCTAAGTCCATAACTCTATAGCACACTTTTC
Found at i:644565 original size:32 final size:32
Alignment explanation
Indices: 644514--644674 Score: 202
Period size: 32 Copynumber: 5.0 Consensus size: 32
644504 CCAATGGCGA
644514 AACCTTCTTCAAAAGCCCACACAAGTTGGTGGC
1 AACCTTCTTC-AAAGCCCACACAAGTTGGTGGC
*
644547 AACTTTCTTCAAAGCCCACACAAGTTGGTGGC
1 AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
* *
644579 AACC-CCTTCAAAGCCCACACTAGTTGGTGGC
1 AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
** *
644610 AACCCTTCTT-AAAGTGCACACAAGTCGGTGGC
1 AA-CCTTCTTCAAAGCCCACACAAGTTGGTGGC
* *
644642 AACCCT-TTCAAAAGCCCACACAAGCTGGTGGC
1 AACCTTCTTC-AAAGCCCACACAAGTTGGTGGC
644674 A
1 A
644675 TCTCCTTCTA
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
30 2 0.02
31 30 0.27
32 66 0.60
33 12 0.11
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.20
Consensus pattern (32 bp):
AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
Found at i:644592 original size:63 final size:64
Alignment explanation
Indices: 644520--644683 Score: 224
Period size: 63 Copynumber: 2.6 Consensus size: 64
644510 GCGAAACCTT
* *
644520 CTTCAAAAGCCCACACAAGTTGGTGGCAA-CTTTCTTCAAAGCCCACACAAGTTGGTGGCAACCC
1 CTTCAAAAGCCCACACAAGTTGGTGGCAACCCTTCTT-AAAGCCCACACAAGTCGGTGGCAACCC
* **
644584 CTTC-AAAGCCCACACTAGTTGGTGGCAACCCTTCTTAAAGTGCACACAAGTCGGTGGCAACCC
1 CTTCAAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGCAACCC
* * *
644647 TTTCAAAAGCCCACACAAGCTGGTGGCATCTCCTTCT
1 CTTCAAAAGCCCACACAAGTTGGTGGCAAC-CCTTCT
644684 AAGTCTGACG
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
63 50 0.57
64 32 0.36
65 6 0.07
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (64 bp):
CTTCAAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGCAACCC
Found at i:644944 original size:104 final size:104
Alignment explanation
Indices: 644683--645245 Score: 695
Period size: 104 Copynumber: 5.4 Consensus size: 104
644673 CATCTCCTTC
* * * ** * *
644683 TAAGTCTGACGTTGCTAGCCTCAAATCAGCACATTGGCACCTTTATCTTT-T-AA-ACCAATATC
1 TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTCAAGTCCAATATC
* * *
644745 ACTGGCCTTAAATCAGCATATTAGCACCTTTATCAACTT
66 GCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
* * *
644784 TAAATC-AATGTTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTCTCAAGTCCAATATC
1 TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTCAAGTCCAATATC
* *
644848 GCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTT
66 GCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
* * * * * *
644887 TAAGTCTGATATTGCTGGCCTTGAATCAGCAGACTGGCACCTTTTTCTTTCTCAAGTCCAACATT
1 TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTCAAGTCCAATATC
644952 GCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
66 GCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
* *
644991 TAAGTTTAATATTGCTGGCCTTGAATCAGCACATTGGCA-CTTTCTTCTTTCTCAAGTCCAATAT
1 TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTT-TTCTTTCTCAAGTCCAATAT
* * * * *
645055 CGTTGGCCTTGAATCAGCACAATGGCACCTTTATCAACTT
65 CGCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
* * *
645095 TAAGTCCAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCTTCTTCTTTCTCAAGTCTAAT
1 TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACC-T-TT-TTCTTTCTCAAGTCCAAT
* * **
645160 ATCGCTGGCTTTGAATCAGCATATTAACACCTTTGCCATCTT
63 ATCGCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
* *** *
645202 TGAGTCTAATGTCATTGGCCTTGAGTCAGCACATTGGCACCTTT
1 TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTT
645246 GTCATCTTTA
Statistics
Matches: 397, Mismatches: 57, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
100 35 0.09
101 6 0.02
102 2 0.01
103 51 0.13
104 211 0.53
105 3 0.01
106 2 0.01
107 87 0.22
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (104 bp):
TAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTCAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTAGCACCTTTATCATCTT
Found at i:645002 original size:156 final size:155
Alignment explanation
Indices: 644706--645257 Score: 523
Period size: 156 Copynumber: 3.5 Consensus size: 155
644696 GCTAGCCTCA
* * * ** * * * *
644706 AATCAGCACATTGGCACC-TTT-ATCTTTTAA-ACCAATATCACTGGCCTTAAATCAGCATATTA
1 AATCAGCATATTGGCACCTTTTCATC-TTTAAGTCTAATATCGTTGGCCTTGAATCAGCACAATG
* **
644768 GCACCTTTATCAACTTTAAAT-CAATGTTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCT-
65 GCACCTTTATC-ACTTTAAGTCCAACATTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTC
* *
644831 TTCTCAAGTCCAATATCGCTAGCCTTG
129 TTCTCAAGTCTAATATCGCTGGCCTTG
* * * * *
644858 AATCAGCATATTGGCACCTTTATCATCTTTAAGTCTGATATTGCTGGCCTTGAATCAGCAGACTG
1 AATCAGCATATTGGCACCTTT-TCATCTTTAAGTCTAATATCGTTGGCCTTGAATCAGCACAATG
* * *
644923 GCACCTTTTTC-TTTCTCAAGTCCAACATTGCTGGCCTTGAATCAGCATATTAGCACCTT-TATC
65 GCACCTTTATCACTT-T-AAGTCCAACATTGCTGGCCTTGAATCAGCATATTGGCACCTTCT-TC
* *
644986 ATCTT-T-AAGTTTAATATTGCTGGCCTTG
127 -TCTTCTCAAGTCTAATATCGCTGGCCTTG
* * *
645014 AATCAGCACATTGGCA-C-TTTCTTCTTTCTCAAGTCCAATATCGTTGGCCTTGAATCAGCACAA
1 AATCAGCATATTGGCACCTTTTCATC-TT-T-AAGTCTAATATCGTTGGCCTTGAATCAGCACAA
** * *
645077 TGGCACCTTTATCAACTTTAAGTCCAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCTTC
63 TGGCACCTTTATC-ACTTTAAGTCCAACATTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
*
645142 TTCTTTCTCAAGTCTAATATCGCTGGCTTTG
127 -TC-TTCTCAAGTCTAATATCGCTGGCCTTG
** * * * * * *
645173 AATCAGCATATTAACACCTTTGCCATCTTTGAGTCTAATGTCATTGGCCTTGAGTCAGCACATTG
1 AATCAGCATATTGGCACCTTT-TCATCTTTAAGTCTAATATCGTTGGCCTTGAATCAGCACAATG
*
645238 GCACCTTTGTCATCTTTAAG
65 GCACCTTTATCA-CTTTAAG
645258 CCTAATGTCA
Statistics
Matches: 326, Mismatches: 51, Indels: 39
0.78 0.12 0.09
Matches are distributed among these distances:
152 17 0.05
153 8 0.02
154 11 0.03
155 42 0.13
156 149 0.46
157 6 0.02
158 6 0.02
159 78 0.24
160 2 0.01
161 4 0.01
162 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (155 bp):
AATCAGCATATTGGCACCTTTTCATCTTTAAGTCTAATATCGTTGGCCTTGAATCAGCACAATGG
CACCTTTATCACTTTAAGTCCAACATTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTCTT
CTCAAGTCTAATATCGCTGGCCTTG
Found at i:645243 original size:52 final size:51
Alignment explanation
Indices: 644706--645294 Score: 460
Period size: 52 Copynumber: 11.4 Consensus size: 51
644696 GCTAGCCTCA
* * * *
644706 AATCAGCACATTGGCACC-TTT-ATCTTTTAA-ACCAATATCACTGGCCTTA
1 AATCAGCACATTGGCACCTTTTCATC-TTTAAGTCTAATATCGCTGGCCTTG
* * * * * *
644755 AATCAGCATATTAGCACCTTTATCAACTTTAAATC-AATGTTGCTGGCCTTG
1 AATCAGCACATTGGCACCTTT-TCATCTTTAAGTCTAATATCGCTGGCCTTG
* * *
644806 AATCAGCATATTGGCACCTTCTTC-T-TTCTCAAGTCCAATATCGCTAGCCTTG
1 AATCAGCACATTGGCACCTT-TTCATCTT-T-AAGTCTAATATCGCTGGCCTTG
* * *
644858 AATCAGCATATTGGCACCTTTATCATCTTTAAGTCTGATATTGCTGGCCTTG
1 AATCAGCACATTGGCACCTTT-TCATCTTTAAGTCTAATATCGCTGGCCTTG
* * * * *
644910 AATCAGCAGACTGGCACCTTTT--TCTTTCTCAAGTCCAACATTGCTGGCCTTG
1 AATCAGCACATTGGCACCTTTTCATC-TT-T-AAGTCTAATATCGCTGGCCTTG
* * * *
644962 AATCAGCATATTAGCACCTTTATCATCTTTAAGTTTAATATTGCTGGCCTTG
1 AATCAGCACATTGGCACCTTT-TCATCTTTAAGTCTAATATCGCTGGCCTTG
* * *
645014 AATCAGCACATTGGCA-C-TTTCTTCTTTCTCAAGTCCAATATCGTTGGCCTTG
1 AATCAGCACATTGGCACCTTTTCATC-TT-T-AAGTCTAATATCGCTGGCCTTG
* * * * * *
645066 AATCAGCACAATGGCACCTTTATCAACTTTAAGTCCAATGTTGCTAGCCTTG
1 AATCAGCACATTGGCACCTTT-TCATCTTTAAGTCTAATATCGCTGGCCTTG
* *
645118 AATCAGCACATTGGCACCTTCTTCTTCTTTCTCAAGTCTAATATCGCTGGCTTTG
1 AATCAGCACATTGGCACCTT-TTCATC-TT-T-AAGTCTAATATCGCTGGCCTTG
* ** * * * **
645173 AATCAGCATATTAACACCTTTGCCATCTTTGAGTCTAATGTCATTGGCCTTG
1 AATCAGCACATTGGCACCTTT-TCATCTTTAAGTCTAATATCGCTGGCCTTG
* * * ** *
645225 AGTCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATGTCATTGGCCTTA
1 AATCAGCACATTGGCACCTTT-TCATCTTTAAGTCTAATATCGCTGGCCTTG
* *
645277 AATTAGCATATTGGCACC
1 AATCAGCACATTGGCACC
645295 CTTATCATTC
Statistics
Matches: 440, Mismatches: 72, Indels: 53
0.78 0.13 0.09
Matches are distributed among these distances:
49 24 0.05
50 9 0.02
51 48 0.11
52 295 0.67
53 10 0.02
54 12 0.03
55 42 0.10
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (51 bp):
AATCAGCACATTGGCACCTTTTCATCTTTAAGTCTAATATCGCTGGCCTTG
Found at i:647031 original size:21 final size:20
Alignment explanation
Indices: 647005--647045 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
646995 ACAGTCCACG
647005 TTCATGCATTTTGAGCTATGT
1 TTCATGCATTTTGAG-TATGT
*
647026 TTCATGCATTTTTAGTATGT
1 TTCATGCATTTTGAGTATGT
647046 CCAACACCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.12, G:0.17, T:0.51
Consensus pattern (20 bp):
TTCATGCATTTTGAGTATGT
Found at i:655278 original size:141 final size:135
Alignment explanation
Indices: 655095--655482 Score: 449
Period size: 141 Copynumber: 2.8 Consensus size: 135
655085 AAGTTATAAA
* ** *
655095 TTTC-AAAAATCTTATTTCGTACCTTAATGGAGAACTGAAAAGACACGAAAAGTTTTGAAGGTTT
1 TTTCAAAAAAT-TCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAGATTT
* *
655159 CTATACCCCTACGAAAAACCATAGGAATATTAGAAATTTTGAAAAATTAAGCTAATAATTTTTGT
65 CTATACCCCTACGAAAAACCATAGGAATATTAGAAATCTT-AAAAATTAAG------ATTTTTAT
655224 TTAA-TTTTTAAT
123 TTAATTTTTTAAT
* * ** *
655236 TTTCAAAAAATTCATTTCATACCATAATGGAGAACCAAAAAGATGTGAAAAGTTTTGAAGAATTT
1 TTTCAAAAAATTCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAG-ATTT
*
655301 -TATACCCCTACGAAAAACTATAGGAATATTAGAAATCTTAAAAATTAAGATTTTTATTTAATTT
65 CTATACCCCTACGAAAAACCATAGGAATATTAGAAATCTTAAAAATTAAGATTTTTATTTAATTT
655365 TTTAAT
130 TTTAAT
* * ** *
655371 TTCTAAAAAAATTCATTTCGTACCTTAATGGAGAATTGAAAAGATGCGAAAAAATTTAAAGATTT
1 TT-TCAAAAAATTCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAGATTT
* *** * *
655436 CTATACCCTTACGGTTAACCATAGGAATAGTAGAAATATATAAAAAT
65 CTATACCCCTACGAAAAACCATAGGAATATTAGAAATCT-TAAAAAT
655483 GATTAATTTC
Statistics
Matches: 212, Mismatches: 29, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
134 11 0.05
135 14 0.07
136 79 0.37
137 7 0.03
140 10 0.05
141 82 0.39
142 9 0.04
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (135 bp):
TTTCAAAAAATTCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAGATTTC
TATACCCCTACGAAAAACCATAGGAATATTAGAAATCTTAAAAATTAAGATTTTTATTTAATTTT
TTAAT
Found at i:655441 original size:136 final size:135
Alignment explanation
Indices: 655099--655482 Score: 448
Period size: 136 Copynumber: 2.8 Consensus size: 135
655089 TATAAATTTC
* ** *
655099 AAAAATCTTATTTCGTACCTTAATGGAGAACTGAAAAGACACGAAAAGTTTTGAAGGTTTCTATA
1 AAAAAT-TCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAGATTTCTATA
* *
655164 CCCCTACGAAAAACCATAGGAATATTAGAAATTTTGAAAAATTAAGCTAATAATTTTTGTTTAAT
65 CCCCTACGAAAAACCATAGGAATATTAGAAATATT-AAAAATTAAG-----AATTTTTATTTAAT
*
655229 TTTTAATTTTCA
124 TTTTAATTTTAA
* * ** *
655241 AAAAATTCATTTCATACCATAATGGAGAACCAAAAAGATGTGAAAAGTTTTGAAGAATTT-TATA
1 AAAAATTCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAG-ATTTCTATA
* *
655305 CCCCTACGAAAAACTATAGGAATATTAGAAATCTTAAAAATTAAG-ATTTTTATTTAATTTTTTA
65 CCCCTACGAAAAACCATAGGAATATTAGAAATATTAAAAATTAAGAATTTTTATTTAA-TTTTTA
655369 ATTTCTAA
129 ATTT-TAA
* ** *
655377 AAAAATTCATTTCGTACCTTAATGGAGAATTGAAAAGATGCGAAAAAATTTAAAGATTTCTATAC
1 AAAAATTCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAGATTTCTATAC
* *** *
655442 CCTTACGGTTAACCATAGGAATAGTAGAAATATATAAAAAT
66 CCCTACGAAAAACCATAGGAATATTAGAAATAT-TAAAAAT
655483 GATTAATTTC
Statistics
Matches: 208, Mismatches: 29, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
134 11 0.05
135 14 0.07
136 79 0.38
137 7 0.03
140 10 0.05
141 78 0.38
142 9 0.04
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (135 bp):
AAAAATTCATTTCGTACCTTAATGGAGAACTGAAAAGATGCGAAAAGTTTTGAAGATTTCTATAC
CCCTACGAAAAACCATAGGAATATTAGAAATATTAAAAATTAAGAATTTTTATTTAATTTTTAAT
TTTAA
Found at i:656347 original size:13 final size:13
Alignment explanation
Indices: 656328--656361 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
656318 GAAAGCAAAA
656328 TAAGAAGATTACC
1 TAAGAAGATTACC
*
656341 TACGAAGATTACC
1 TAAGAAGATTACC
656354 TAAGAAGA
1 TAAGAAGA
656362 AAATAAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.21
Consensus pattern (13 bp):
TAAGAAGATTACC
Found at i:656741 original size:15 final size:15
Alignment explanation
Indices: 656718--656747 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
656708 ACTAGTTGGA
656718 AAAAATAAATAAAAT
1 AAAAATAAATAAAAT
*
656733 AAAATTAAATAAAAT
1 AAAAATAAATAAAAT
656748 TTTGAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATAAATAAAAT
Found at i:657143 original size:165 final size:159
Alignment explanation
Indices: 656893--657460 Score: 478
Period size: 165 Copynumber: 3.5 Consensus size: 159
656883 AATAAATACA
* * * * * ** * * *
656893 AAAAAATCAAAACTCATAAAATAAATTGAATTTTTTGTAACTGATTTAGTGGAATTCAATGACAA
1 AAAAAATGAAAAATTATAAAATAAA-AGAAATTTTTAAAACTGATTTA-TTGAATTAAATGATAA
* * * * *
656958 TATTAGATTAATTCTAAAAATTTTAAACCGACAAAAATCAC-CCTGAAAACATTTACCAAATAGA
64 TATTTGATGAATTTTAAAAATTATAAACCGA-AAAAATC-CTCC-AAAAACATTTACCAAATAGA
* *
657022 AAAC-TCAATCTTTTAGAAATAGTGAAATTTTAAGG
126 AAACTTC-ATATTTTAGAAATAG-GAAATTTCAAGG
657057 AAAAAATGAAAAACTTATAAAAGTAAATA-AAATTTTTAAAACTGATTTATATGAATTAAATGAT
1 AAAAAATGAAAAA-TTATAAAA-TAAA-AGAAATTTTTAAAACTGATTTAT-TGAATTAAATGAT
657121 AATATTTGATGAATTTTAAAAATTATAAACC-AAGAAGAATCCTCCCAAAAACATTTA-CAAAGT
62 AATATTTGATGAATTTTAAAAATTATAAACCGAA-AA-AATCCT-CCAAAAACATTTACCAAA-T
* * *
657184 AGAAAACTTCGTATTTTAGAAA-AAGAAATTTCAAAG
123 AGAAAACTTCATATTTTAGAAATAGGAAATTTCAAGG
* * *
657220 AAAAAATGAAAATTTCA-AGAAATAAAAGGAATTATTTAAAACT-AATT-TTG-A--AAATGATA
1 AAAAAATGAAAAATT-ATA-AAATAAAAGAAATT-TTTAAAACTGATTTATTGAATTAAATGATA
* * ** *
657279 ATATTTGATGAATTTTGAAAATTATAAACTAAGAAAAAATCCTTCCAAAAACATTTACGGAGTAG
63 ATATTTGATGAATTTTAAAAATTATAAAC--CGAAAAAATCC-TCCAAAAACATTTACCAAATAG
**
657344 AAAACTTCATATTTCGGAAATAAGGAAATTTCAAGG
125 AAAACTTCATATTTTAGAAAT-AGGAAATTTCAAGG
* * * *
657380 -AAAAATGAAAAATTCATGAAATAAAAAGAAATTTTTGAAACTAATTTAATGGTAATTAAATGAT
1 AAAAAATGAAAAATT-ATAAAAT-AAAAGAAATTTTTAAAACTGATTT-ATTG-AATTAAATGAT
* * *
657444 GATATTTAAAGAATTTT
62 AATATTTGATGAATTTT
657461 GATGTCCAAA
Statistics
Matches: 333, Mismatches: 42, Indels: 56
0.77 0.10 0.13
Matches are distributed among these distances:
157 36 0.11
158 38 0.11
159 32 0.10
160 28 0.08
161 2 0.01
162 16 0.05
163 36 0.11
164 22 0.07
165 93 0.28
166 30 0.09
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.31
Consensus pattern (159 bp):
AAAAAATGAAAAATTATAAAATAAAAGAAATTTTTAAAACTGATTTATTGAATTAAATGATAATA
TTTGATGAATTTTAAAAATTATAAACCGAAAAAATCCTCCAAAAACATTTACCAAATAGAAAACT
TCATATTTTAGAAATAGGAAATTTCAAGG
Found at i:657230 original size:19 final size:18
Alignment explanation
Indices: 657203--657241 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
657193 CGTATTTTAG
657203 AAAAAG-AAATTTCAAAGA
1 AAAAAGAAAATTTC-AAGA
657221 AAAAATGAAAATTTCAAGA
1 AAAAA-GAAAATTTCAAGA
657240 AA
1 AA
657242 TAAAAGGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 7 0.37
20 7 0.37
ACGTcount: A:0.67, C:0.05, G:0.10, T:0.18
Consensus pattern (18 bp):
AAAAAGAAAATTTCAAGA
Found at i:657351 original size:158 final size:158
Alignment explanation
Indices: 656950--657426 Score: 479
Period size: 165 Copynumber: 3.0 Consensus size: 158
656940 AGTGGAATTC
* * * * * * * **
656950 AATGACAATATTAGATTAATTCTAAAAATTTTAAACCGACAAAAATCAC-CCTGAAAACATTTAC
1 AATGATAATATTTGATGAATTTTAAAAATTATAAACCAAGAAAAATC-CTCCCAAAAACATTTA-
* * *
657014 CAAA-TAGAAAAC-TCAATCTTTTAGAAAT-AGTGAAATTTTAAGGAAAAAATGAAAAACTT-AT
64 CAAAGTAGAAAACTTC-ATATTTCAGAAATAAG-GAAATTTCAA-GAAAAAATGAAAAA-TTCA-
* *
657075 A-AAAGTAAATA-AAATTTTTAAAACTGATTTATATGAATTA
124 AGAAA-TAAAAAGAAATTTTTAAAACT-AATT-T-TG-A--A
*
657115 AATGATAATATTTGATGAATTTTAAAAATTATAAACCAAGAAGAATCCTCCCAAAAACATTTACA
1 AATGATAATATTTGATGAATTTTAAAAATTATAAACCAAGAAAAATCCTCCCAAAAACATTTACA
* * *
657180 AAGTAGAAAACTTCGTATTTTAGAAA-AA-GAAATTTCAAAGAAAAAATGAAAATTTCAAGAAAT
66 AAGTAGAAAACTTCATATTTCAGAAATAAGGAAATTTC-AAGAAAAAATGAAAAATTCAAGAAAT
*
657243 -AAAAGGAATTATTTAAAACTAATTTTGAA
130 AAAAAGAAATT-TTTAAAACTAATTTTGAA
* * *
657272 AATGATAATATTTGATGAATTTTGAAAATTATAAACTAAGAAAAAATCCTTCCAAAAACATTTAC
1 AATGATAATATTTGATGAATTTTAAAAATTATAAACCAAG-AAAAATCCTCCCAAAAACATTTAC
** * * *
657337 GGAGTAGAAAACTTCATATTTCGGAAATAAGGAAATTTCAAGGAAAAATGAAAAATTCATGAAAT
65 AAAGTAGAAAACTTCATATTTCAGAAATAAGGAAATTTCAAGAAAAAATGAAAAATTCAAGAAAT
*
657402 AAAAAGAAATTTTTGAAACTAATTT
130 AAAAAGAAATTTTTAAAACTAATTT
657427 AATGGTAATT
Statistics
Matches: 268, Mismatches: 31, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
157 39 0.15
158 44 0.16
159 39 0.15
160 19 0.07
161 4 0.01
162 11 0.04
163 33 0.12
164 7 0.03
165 70 0.26
166 2 0.01
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.30
Consensus pattern (158 bp):
AATGATAATATTTGATGAATTTTAAAAATTATAAACCAAGAAAAATCCTCCCAAAAACATTTACA
AAGTAGAAAACTTCATATTTCAGAAATAAGGAAATTTCAAGAAAAAATGAAAAATTCAAGAAATA
AAAAGAAATTTTTAAAACTAATTTTGAA
Found at i:658569 original size:45 final size:45
Alignment explanation
Indices: 658438--658577 Score: 145
Period size: 45 Copynumber: 3.1 Consensus size: 45
658428 TAGATGTATT
* * * * *
658438 GAGTTTGACCAAGGCTAAGCCTTTACGTCAAACAAATATAAAAAG
1 GAGTTTGACCAAGGCTAAACCATCACATCAAACAAATATGAAAAG
* * * * *
658483 AAGTTTGACTAGGGCTAAACCATCATATCAAATAAATATGAAAAG
1 GAGTTTGACCAAGGCTAAACCATCACATCAAACAAATATGAAAAG
* * * * *
658528 GAGTTTGACCAAGGCTAAACCGTCACATCATACGAAGATGAAAAT
1 GAGTTTGACCAAGGCTAAACCATCACATCAAACAAATATGAAAAG
658573 GAGTT
1 GAGTT
658578 CAATCGAGCC
Statistics
Matches: 75, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (45 bp):
GAGTTTGACCAAGGCTAAACCATCACATCAAACAAATATGAAAAG
Found at i:658714 original size:47 final size:47
Alignment explanation
Indices: 658618--658761 Score: 146
Period size: 47 Copynumber: 3.0 Consensus size: 47
658608 GATATGAAAG
* * *
658618 AAGTTTGACCAGGACTAATGCCAAAACAATCAAACAATGGTAAAAAA
1 AAGTTTGACTAGGACTAATGCCAATACAATCAAACAAGGGTAAAAAA
* * ***
658665 AAGTTCGACTAGGACTAATCGCCAATACAATCAAATAAGGGT-GTGAA
1 AAGTTTGACTAGGACTAAT-GCCAATACAATCAAACAAGGGTAAAAAA
* * * * *
658712 AAGTTTGACTAGGTCCTAATGCCAATGCAATTAGACTAGGGTAAAAAA
1 AAGTTTGACTAGG-ACTAATGCCAATACAATCAAACAAGGGTAAAAAA
658760 AA
1 AA
658762 AAGTTTAATT
Statistics
Matches: 76, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
47 48 0.63
48 28 0.37
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (47 bp):
AAGTTTGACTAGGACTAATGCCAATACAATCAAACAAGGGTAAAAAA
Found at i:658920 original size:91 final size:91
Alignment explanation
Indices: 658810--658989 Score: 227
Period size: 91 Copynumber: 2.0 Consensus size: 91
658800 AGGTAAAAGC
* * * **
658810 GTTTGACTAGTTCCAAATGCGAATACACTCAAACAAGGGTGCAAAGCGTTTGACCACGACTAATG
1 GTTTGACTAGTTCCAAATGCCAATACACTCAAACAAGGGTGCAAAGAGTTTGACAACGACTAACA
* *
658875 CCAATACAACCAAATGAAAGAAGACT
66 CCAATACAACCAAACGAAAAAAGACT
* * * * * *
658901 GTTTGACTAAG-TCCTAATGCCAGTATAGTCAAACAAGGGTGGAAAGAGTTTGACAAGGACTAAC
1 GTTTGACT-AGTTCCAAATGCCAATACACTCAAACAAGGGTGCAAAGAGTTTGACAACGACTAAC
658965 ACCAATACAACCAAACGAAAAAAGA
65 ACCAATACAACCAAACGAAAAAAGA
658990 TAGTTTAACC
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
91 73 0.97
92 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (91 bp):
GTTTGACTAGTTCCAAATGCCAATACACTCAAACAAGGGTGCAAAGAGTTTGACAACGACTAACA
CCAATACAACCAAACGAAAAAAGACT
Found at i:659024 original size:91 final size:91
Alignment explanation
Indices: 658833--659036 Score: 214
Period size: 91 Copynumber: 2.2 Consensus size: 91
658823 CAAATGCGAA
* * * * ** * *
658833 TACACTCAAACAAGGGTGCAAAGCGTTTGACCACGACTAATGCCAATACAACCAAATGAAAGAAG
1 TACAATCAAACAAGGGTGGAAAGAGTTTGACAACGACTAACACCAATACAACCAAACGAAAAAAG
* * *
658898 ACTGTTTGACTAAGTCCTAATGCCAG
66 ACTGTTTAACCAAGTCCTAAAGCCAG
* * *
658924 TATAGTCAAACAAGGGTGGAAAGAGTTTGACAAGGACTAACACCAATACAACCAAACGAAAAAAG
1 TACAATCAAACAAGGGTGGAAAGAGTTTGACAACGACTAACACCAATACAACCAAACGAAAAAAG
* **
658989 A-TAGTTTAACCAGGTTTTAAAGCCAAG
66 ACT-GTTTAACCAAGTCCTAAAGCC-AG
*
659016 -ACAATCAAACGAGGGTGGAAA
1 TACAATCAAACAAGGGTGGAAA
659037 AACTTTGGCC
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
90 1 0.01
91 89 0.97
92 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (91 bp):
TACAATCAAACAAGGGTGGAAAGAGTTTGACAACGACTAACACCAATACAACCAAACGAAAAAAG
ACTGTTTAACCAAGTCCTAAAGCCAG
Found at i:659609 original size:92 final size:92
Alignment explanation
Indices: 659450--659652 Score: 275
Period size: 92 Copynumber: 2.2 Consensus size: 92
659440 TTTGTGGTAA
** * * * *
659450 TGTGATGCATCAATGTCATCTAGTGTCTAAAAGAAAGGGATATGATTAGGAATGAGTGGTCGAGA
1 TGTGATGCATCAATACCATCTAGTGGCAAAAAGAAAAGGATATGATTAGGAATGAGTGATCGAGA
* * *
659515 TATCCTTGCCCCAAGGAAATCAGGCTT
66 TATCCTTACCCCAAGGAAATCAAGCAT
659542 TGTGATGCATCAATACCATCTAGTGGCAAAAAGAAAAGGATATGATTAGGAATGAGTGATC-AGG
1 TGTGATGCATCAATACCATCTAGTGGCAAAAAGAAAAGGATATGATTAGGAATGAGTGATCGA-G
**
659606 ATATCCTTACCTTAAGGAAATCAAGCAT
65 ATATCCTTACCCCAAGGAAATCAAGCAT
*
659634 TATGATGCAT-AATACCATC
1 TGTGATGCATCAATACCATC
659653 CGGTAGGAAT
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
91 10 0.10
92 88 0.90
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (92 bp):
TGTGATGCATCAATACCATCTAGTGGCAAAAAGAAAAGGATATGATTAGGAATGAGTGATCGAGA
TATCCTTACCCCAAGGAAATCAAGCAT
Found at i:661069 original size:18 final size:18
Alignment explanation
Indices: 661046--661081 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
661036 TTCATTCTTT
661046 TTTTTTCTCTTGTTTTTC
1 TTTTTTCTCTTGTTTTTC
* *
661064 TTTTTTCTTTTTTTTTTC
1 TTTTTTCTCTTGTTTTTC
661082 ACAAAAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (18 bp):
TTTTTTCTCTTGTTTTTC
Found at i:662529 original size:20 final size:20
Alignment explanation
Indices: 662485--662542 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
662475 ATTTCAATGA
***
662485 TTTGTATCGATACATAAAAT
1 TTTGTATCGATACATATTTT
*
662505 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
662525 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
662543 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:662599 original size:13 final size:13
Alignment explanation
Indices: 662581--662605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
662571 ATTACTCAAA
662581 TGTATCGATACAT
1 TGTATCGATACAT
662594 TGTATCGATACA
1 TGTATCGATACA
662606 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:664824 original size:24 final size:26
Alignment explanation
Indices: 664797--664847 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
664787 TATCAAAATT
664797 TATTCAT-C-GGGGACACTCCAACCC
1 TATTCATCCAGGGGACACTCCAACCC
*
664821 TATTCCTCCGAGGGGACACTCCAACCC
1 TATTCATCC-AGGGGACACTCCAACCC
664848 CGTTTTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 6 0.26
25 1 0.04
27 16 0.70
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.20
Consensus pattern (26 bp):
TATTCATCCAGGGGACACTCCAACCC
Found at i:669575 original size:17 final size:16
Alignment explanation
Indices: 669551--669621 Score: 81
Period size: 17 Copynumber: 4.3 Consensus size: 16
669541 AGTGATGAAA
669551 AAAAAAAACAAACAAAC
1 AAAAAAAA-AAACAAAC
*
669568 AAACAAAAAAAACACAC
1 AAA-AAAAAAAACAAAC
*
669585 AAAAAAAAATAAAAAAC
1 AAAAAAAAA-AACAAAC
*
669602 AAAAAAAAACACAAA-
1 AAAAAAAAAAACAAAC
669617 AAAAA
1 AAAAA
669622 GTGCAAAGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
15 5 0.11
16 10 0.21
17 27 0.57
18 5 0.11
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.01
Consensus pattern (16 bp):
AAAAAAAAAAACAAAC
Found at i:669575 original size:21 final size:20
Alignment explanation
Indices: 669551--669620 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 20
669541 AGTGATGAAA
669551 AAAAAAAACAAACAAACAAAC
1 AAAAAAAACAAACAAA-AAAC
* *
669572 AAAAAAAACACACAAAAAAA
1 AAAAAAAACAAACAAAAAAC
669592 AATAAAAAACAAA-AAAAAAC
1 AA-AAAAAACAAACAAAAAAC
669612 ACAAAAAAA
1 A-AAAAAAA
669621 AGTGCAAAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
20 18 0.42
21 25 0.58
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.01
Consensus pattern (20 bp):
AAAAAAAACAAACAAAAAAC
Found at i:669586 original size:13 final size:13
Alignment explanation
Indices: 669548--669620 Score: 62
Period size: 13 Copynumber: 5.6 Consensus size: 13
669538 AAAAGTGATG
669548 AAAAAAAA-AAAC
1 AAAAAAAACAAAC
*
669560 -AAACAAACAAAC
1 AAAAAAAACAAAC
*
669572 AAAAAAAACACAC
1 AAAAAAAACAAAC
*
669585 AAAAAAAA-ATAAA
1 AAAAAAAACA-AAC
*
669598 AAACAAAAAAAAAC
1 AAA-AAAAACAAAC
669612 ACAAAAAAA
1 A-AAAAAAA
669621 AGTGCAAAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
11 6 0.12
12 5 0.10
13 22 0.45
14 13 0.27
15 3 0.06
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.01
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:669589 original size:31 final size:29
Alignment explanation
Indices: 669553--669621 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 29
669543 TGATGAAAAA
669553 AAAAAACAAACAAACAAACAAAAAAAACACAC
1 AAAAAA-AAACAAA-AAACAAAAAAAA-ACAC
*
669585 AAAAAAAAATAAAAAACAAAAAAAAACAC
1 AAAAAAAAACAAAAAACAAAAAAAAACAC
669614 AAAAAAAA
1 AAAAAAAA
669622 GTGCAAAGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 12 0.33
30 12 0.33
31 6 0.17
32 6 0.17
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.01
Consensus pattern (29 bp):
AAAAAAAAACAAAAAACAAAAAAAAACAC
Found at i:669600 original size:7 final size:7
Alignment explanation
Indices: 669548--669619 Score: 55
Period size: 6 Copynumber: 10.7 Consensus size: 7
669538 AAAAGTGATG
669548 AAAAA-A
1 AAAAACA
669554 AAAAACA
1 AAAAACA
669561 AACAAACA
1 AA-AAACA
*
669569 AACAA-A
1 AAAAACA
669575 AAAAACA
1 AAAAACA
*
669582 CACAAA-A
1 -AAAAACA
*
669589 AAAAATA
1 AAAAACA
669596 AAAAAC-
1 AAAAACA
669602 AAAAA-A
1 AAAAACA
*
669608 AAACACA
1 AAAAACA
669615 AAAAA
1 AAAAA
669620 AAGTGCAAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
6 23 0.44
7 18 0.35
8 11 0.21
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.01
Consensus pattern (7 bp):
AAAAACA
Found at i:669621 original size:21 final size:20
Alignment explanation
Indices: 669550--669621 Score: 83
Period size: 22 Copynumber: 3.5 Consensus size: 20
669540 AAGTGATGAA
669550 AAAAAAAAACAAACAAACAAAC
1 AAAAAAAAACAAA-AAA-AAAC
*
669572 AAAAAAAACACACAAAAAAA-
1 AAAAAAAA-ACAAAAAAAAAC
*
669592 AATAAAAAACAAAAAAAAAC
1 AAAAAAAAACAAAAAAAAAC
669612 ACAAAAAAAA
1 A-AAAAAAAA
669622 GTGCAAAGGC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.23
20 8 0.19
21 10 0.23
22 11 0.26
23 4 0.09
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.01
Consensus pattern (20 bp):
AAAAAAAAACAAAAAAAAAC
Found at i:670982 original size:30 final size:30
Alignment explanation
Indices: 670919--671068 Score: 153
Period size: 30 Copynumber: 4.9 Consensus size: 30
670909 ATACCTTTTT
*
670919 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTC
670950 AAAGTCCACGACTCAGTGGCAT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTC
*
670980 AAAGTCCACGACTTAGTGGCATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAT-CTTTTC-TC
* *
671012 AAAGCCCACGAATCAGTGGCAT-TTTGTC-C
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTC
* * * *
671041 TAAAGCCCACAACTCCGTGGCACCTTTT
1 -AAAGTCCACGACTCAGTGGCATCTTTT
671069 TCTTTTTAAA
Statistics
Matches: 103, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
29 3 0.03
30 49 0.48
31 27 0.26
32 24 0.23
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTC
Found at i:671031 original size:62 final size:61
Alignment explanation
Indices: 670919--671062 Score: 184
Period size: 62 Copynumber: 2.3 Consensus size: 61
670909 ATACCTTTTT
* *
670919 AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGAATCAGTGGCATTTTGTCTC
* *
670980 AAAGTCCACGACTTAGTGGC-ATCCTTTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTC-C
1 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TCAAAGCCCACGAATCAGTGGCATTTTGTCTC
* * *
671041 TAAAGCCCACAACTCCGTGGCA
1 -AAAGTCCACGACTCAGTGGCA
671063 CCTTTTTCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
60 2 0.03
61 25 0.35
62 44 0.62
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (61 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGAATCAGTGGCATTTTGTCTC
Found at i:671070 original size:62 final size:63
Alignment explanation
Indices: 670943--671139 Score: 170
Period size: 62 Copynumber: 3.0 Consensus size: 63
670933 AGTGGCAATC
* * * * **
670943 TCTTCTCAAAGTCCACGACTCAGTGGCATTTTGT-CTCAAAGTCCACGACTTAGTGGCATCC-TT
1 TCTT-TCAAAGCCCACGAATCAGTGGCATTTTGTCCT-AAAGCCCACAACTCCGTGGCA-CCTTT
671006 T
63 T
671007 TC-TTCAAAGCCCACGAATCAGTGGCATTTTGTCCTAAAGCCCACAACTCCGTGGCACCTTTT
1 TCTTTCAAAGCCCACGAATCAGTGGCATTTTGTCCTAAAGCCCACAACTCCGTGGCACCTTTT
* * * *
671069 TCTTTTTAAAGCCCAC-AACTCCGTGGCACCTTTT-TCTTTTTTAAGCCCACAACTCCGTGGCAC
1 TC-TTTCAAAGCCCACGAA-TCAGTGGCA--TTTTGTC---CTAAAGCCCACAACTCCGTGGCAC
671132 TCTTTT
59 -CTTTT
671138 TC
1 TC
671140 CCTTTTCAAA
Statistics
Matches: 112, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
61 2 0.02
62 49 0.44
63 5 0.04
64 21 0.19
65 2 0.02
66 4 0.04
68 22 0.20
69 7 0.06
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (63 bp):
TCTTTCAAAGCCCACGAATCAGTGGCATTTTGTCCTAAAGCCCACAACTCCGTGGCACCTTTT
Found at i:671155 original size:37 final size:34
Alignment explanation
Indices: 671041--671205 Score: 226
Period size: 34 Copynumber: 4.8 Consensus size: 34
671031 CATTTTGTCC
671041 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
671075 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
*
671109 TTAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 TAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT
* *
671146 CAAATCCCACAACTCCGTGGCACCTTGTTT-TTTT
1 TAAAGCCCACAACTCCGTGGCACCTT-TTTCTTTT
* * *
671180 T-AAGTCCACAACTTCGTGGCATCTTT
1 TAAAGCCCACAACTCCGTGGCACCTTT
671206 CACCCTTTCT
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
32 1 0.01
33 20 0.17
34 60 0.51
35 6 0.05
36 3 0.03
37 28 0.24
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (34 bp):
TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:671166 original size:71 final size:68
Alignment explanation
Indices: 671043--671205 Score: 240
Period size: 71 Copynumber: 2.4 Consensus size: 68
671033 TTTTGTCCTA
* *
671043 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTGTT-TT
671107 TTTT
65 TTTT
*
671111 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAATCCCACAACTCCGTGGCACCTTGTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACCTTGTTT
671176 TTTTT
64 TTTTT
* *
671181 AAGTCCACAACTTCGTGGCA-TCTTT
1 AAGCCCACAACTCCGTGGCACTCTTT
671206 CACCCTTTCT
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
68 21 0.24
69 11 0.13
70 24 0.28
71 31 0.36
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.36
Consensus pattern (68 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTGTTTTT
TTT
Found at i:671238 original size:71 final size:70
Alignment explanation
Indices: 671043--671225 Score: 239
Period size: 70 Copynumber: 2.6 Consensus size: 70
671033 TTTTGTCCTA
** * *
671043 AAGCCCACAACTCCGTGGCAC-CTTT-TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 AAGCCCACAACTCCGTGGCACTCTTTCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTGTTCT
671106 TTTTT
66 TTTTT
** *
671111 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAATCCCACAACTCCGTGGCACCTTGTT-
1 AAGCCCACAACTCCGTGGCACTCTTTCACCCTTTT-AAAGCCCACAACTCCGTGGCACCTTGTTC
671175 TTTTTT
65 TTTTTT
* *
671181 AAGTCCACAACTTCGTGGCA-TCTTTCACCCTTTCTAAAGCCCACA
1 AAGCCCACAACTCCGTGGCACTCTTTCACCCTTT-TAAAGCCCACA
671226 CAAGTCGGTG
Statistics
Matches: 102, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
68 21 0.21
69 24 0.24
70 31 0.30
71 26 0.25
ACGTcount: A:0.21, C:0.34, G:0.11, T:0.34
Consensus pattern (70 bp):
AAGCCCACAACTCCGTGGCACTCTTTCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTGTTCT
TTTTT
Found at i:671286 original size:34 final size:33
Alignment explanation
Indices: 671209--671313 Score: 185
Period size: 33 Copynumber: 3.2 Consensus size: 33
671199 CATCTTTCAC
671209 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
671241 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
671274 CCATTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
671308 CCTTCT
1 CCTTCT
671314 AAGCCCAATA
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
32 4 0.06
33 34 0.49
34 32 0.46
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:671433 original size:49 final size:49
Alignment explanation
Indices: 671313--672023 Score: 1001
Period size: 49 Copynumber: 14.9 Consensus size: 49
671303 GCAACCCTTC
* * *
671313 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATC-TT
* * * *
671363 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
671412 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
671456 -AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
671504 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
671548 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
671596 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
671639 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
671688 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
671737 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
671786 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
671835 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
671884 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
671933 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
671981 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
672024 TAAAACCCAA
Statistics
Matches: 590, Mismatches: 52, Indels: 39
0.87 0.08 0.06
Matches are distributed among these distances:
43 112 0.19
44 2 0.00
45 1 0.00
46 7 0.01
48 49 0.08
49 375 0.64
50 44 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:671454 original size:21 final size:21
Alignment explanation
Indices: 671430--671497 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
671420 ATGTAGCTGG
671430 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
671451 CCTTCAAGTCCAATATCGTTGG--
1 CCTTGAA-T-CAGCA-CATTGGCA
*
671473 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
671494 CCTT
1 CCTT
671498 CATCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.33
22 7 0.21
23 3 0.09
24 5 0.15
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:671780 original size:98 final size:98
Alignment explanation
Indices: 671313--672023 Score: 1084
Period size: 92 Copynumber: 7.4 Consensus size: 98
671303 GCAACCCTTC
* * * *
671313 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATATTGC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATC-TTTAAGTCCAATATAGC
* *
671378 TGGCCTTGAATCAGCATATTGGCACCTTCACCTT
65 TGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
671412 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
*
671471 GGCCTTGAATCAGCATATTGGCACCTTCATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
671504 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
671563 GGCCTTGAATCAGCATATTGGCACCTTCT-TCTT
66 GGCCTTGAATCAGCATATTGGCACCTT-TATCTT
*
671596 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
671655 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
671688 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
671753 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * *
671786 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
671851 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
671884 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
* * *
671949 GGCCTTGAATCAGCACATTGGCACC-TCACCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
671981 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
672024 TAAAACCCAA
Statistics
Matches: 581, Mismatches: 19, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
89 1 0.00
91 1 0.00
92 256 0.44
96 3 0.01
97 47 0.08
98 235 0.40
99 38 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (98 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
GGCCTTGAATCAGCATATTGGCACCTTTATCTT
Found at i:672861 original size:20 final size:20
Alignment explanation
Indices: 672817--672874 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
672807 ATTTCAATGA
***
672817 TTTGTATCGATACATAAAAT
1 TTTGTATCGATACATATTTT
*
672837 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
*
672857 TTTGTATTGATACA-ATTT
1 TTTGTATCGATACATATTT
672875 AAGCTACTGC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 4 0.12
20 28 0.88
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:678393 original size:34 final size:34
Alignment explanation
Indices: 678292--678394 Score: 170
Period size: 35 Copynumber: 3.0 Consensus size: 34
678282 AGAATTATTG
*
678292 AGAGGTTCTATCTTAGCCTTTGACAAAGATAGGGA
1 AGAGGTTCTATCTTAGCCTTTGA-AAAGATAAGGA
678327 AGAGGTTCTATCTTAGCCTTTGAAAAAGATAAGGA
1 AGAGGTTCTATCTTAGCCTTTG-AAAAGATAAGGA
*
678362 AGAGGTTCTATCTTAGCCTGTGAAAAGATAAGG
1 AGAGGTTCTATCTTAGCCTTTGAAAAGATAAGG
678395 TTGTAAAGTT
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
34 11 0.17
35 53 0.82
36 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (34 bp):
AGAGGTTCTATCTTAGCCTTTGAAAAGATAAGGA
Found at i:681198 original size:125 final size:125
Alignment explanation
Indices: 680976--681224 Score: 464
Period size: 125 Copynumber: 2.0 Consensus size: 125
680966 CGGGCTGTTT
680976 CATCTTCCCAAACTACTCTGAGGTAGTGCAAATGAGTTTGTGATACTCATACCACTCTTTCCCTT
1 CATCTTCCCAAACTACTCTGAGGTAGTGCAAATGAGTTTGTGATACTCATACCACTCTTTCCCTT
681041 CTGTCACGAATGTTTGGATGTCCATAACTCGAGTTTAGACACGTAAACACCAAGAAAAAG
66 CTGTCACGAATGTTTGGATGTCCATAACTCGAGTTTAGACACGTAAACACCAAGAAAAAG
681101 CATCTTCCCAAACTACTC-GAAGGTAGTGCAAATGAGTTTGTGATACTCATACCACTCTTTCCCT
1 CATCTTCCCAAACTACTCTG-AGGTAGTGCAAATGAGTTTGTGATACTCATACCACTCTTTCCCT
* *
681165 TCTTTCACGAATGTTTGGATGTCCATGACTCGAGTTTAGACACGTAAACACCAAGAAAAA
65 TCTGTCACGAATGTTTGGATGTCCATAACTCGAGTTTAGACACGTAAACACCAAGAAAAA
681225 ACAAGAATAT
Statistics
Matches: 121, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
124 1 0.01
125 120 0.99
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (125 bp):
CATCTTCCCAAACTACTCTGAGGTAGTGCAAATGAGTTTGTGATACTCATACCACTCTTTCCCTT
CTGTCACGAATGTTTGGATGTCCATAACTCGAGTTTAGACACGTAAACACCAAGAAAAAG
Found at i:683503 original size:20 final size:19
Alignment explanation
Indices: 683477--683536 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
683467 CTGTTAGGCC
683477 AAATGTATCGATACAATTCA
1 AAATGTATCGATACAATT-A
* *
683497 TAATGTATTGATACAACTTA
1 AAATGTATCGATACAA-TTA
*
683517 AACATGTATCAATACAATTA
1 AA-ATGTATCGATACAATTA
683537 CAGGGTCGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.33
Consensus pattern (19 bp):
AAATGTATCGATACAATTA
Found at i:683628 original size:20 final size:20
Alignment explanation
Indices: 683603--683654 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
683593 AATTCCATAG
683603 TGTATCGATACAAAGCAATT
1 TGTATCGATACAAAGCAATT
* **
683623 TGTATCAATACTTAGCAATT
1 TGTATCGATACAAAGCAATT
*
683643 TGTATTGATACA
1 TGTATCGATACA
683655 TCTGGGTGCG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTATCGATACAAAGCAATT
Found at i:684260 original size:23 final size:23
Alignment explanation
Indices: 684234--684278 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
684224 CGTTCTCCTT
*
684234 CTTTTTGTTATAAGTCAAATTTC
1 CTTTTTGTTATAAGCCAAATTTC
684257 CTTTTTGTTATAAGCCAAATTT
1 CTTTTTGTTATAAGCCAAATTT
684279 ATTCACCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.51
Consensus pattern (23 bp):
CTTTTTGTTATAAGCCAAATTTC
Found at i:687479 original size:19 final size:19
Alignment explanation
Indices: 687455--687517 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
687445 ATCGATATAA
687455 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
687474 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
*
687487 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTGT
687506 TGTATCGATACA
1 TGTATCGATACA
687518 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:687482 original size:32 final size:32
Alignment explanation
Indices: 687441--687525 Score: 152
Period size: 32 Copynumber: 2.7 Consensus size: 32
687431 TTTCAACAAT
*
687441 TTGTATCGATATAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
687473 TTGTATCGATACAATGTATTGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
687505 TTGTATCGATACAATGTATCG
1 TTGTATCGATACAATGTATCG
687526 CTACGAAGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:687588 original size:13 final size:12
Alignment explanation
Indices: 687548--687628 Score: 70
Period size: 13 Copynumber: 7.1 Consensus size: 12
687538 TGCCAAAAAA
687548 ATGTATCGATAC
1 ATGTATCGATAC
687560 AT-TACTC-A-A-
1 ATGTA-TCGATAC
687569 ATGTATCGATAC
1 ATGTATCGATAC
687581 ATTGTATCGATAC
1 A-TGTATCGATAC
687594 AT-TACTC-A-A-
1 ATGTA-TCGATAC
687603 ATGTATCGATAC
1 ATGTATCGATAC
687615 ATTGTATCGATAC
1 A-TGTATCGATAC
687628 A
1 A
687629 CTGATCTTTG
Statistics
Matches: 57, Mismatches: 0, Indels: 23
0.71 0.00 0.29
Matches are distributed among these distances:
9 8 0.14
10 8 0.14
11 8 0.14
12 9 0.16
13 24 0.42
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:687592 original size:34 final size:34
Alignment explanation
Indices: 687549--687628 Score: 160
Period size: 34 Copynumber: 2.4 Consensus size: 34
687539 GCCAAAAAAA
687549 TGTATCGATACATTACTCAAATGTATCGATACAT
1 TGTATCGATACATTACTCAAATGTATCGATACAT
687583 TGTATCGATACATTACTCAAATGTATCGATACAT
1 TGTATCGATACATTACTCAAATGTATCGATACAT
687617 TGTATCGATACA
1 TGTATCGATACA
687629 CTGATCTTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (34 bp):
TGTATCGATACATTACTCAAATGTATCGATACAT
Found at i:693161 original size:20 final size:20
Alignment explanation
Indices: 693136--693173 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
693126 AAAGTACCCA
693136 AATGTATCGATAAATTCTTC
1 AATGTATCGATAAATTCTTC
*
693156 AATGTATCGATACATTCT
1 AATGTATCGATAAATTCT
693174 ATCTTTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (20 bp):
AATGTATCGATAAATTCTTC
Found at i:698476 original size:52 final size:52
Alignment explanation
Indices: 698406--698996 Score: 436
Period size: 51 Copynumber: 11.4 Consensus size: 52
698396 GAAATAATAA
* * *
698406 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* ** * *
698458 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGA-AAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
*
698510 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTG-TTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTAGAAATAAAACCGG
* * * *** * * *
698562 GGTTAGAGTATCCCCGATTATGAGAAATCAAT-ATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* *** * **** * *
698613 GGTTGGAGTATCCCCTCGGA-GGT-AACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTAT-CCC-C-GATTGTGAA--AAATTGGTGT-TTTTAGA-AATAAAACCGG
*
698668 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* * ** * *
698719 AGTTGGAGTATCCCCAATTAAAGGAAAATTGGTGTTTTGA-AAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* *
698771 GGTTGGAGTATCCCCGATTGTGGAAAATTAGTG-TTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* * * *** * * * *
698822 GGTTGGAGTATCCCTGATTATGAGAAATCAAT-ATTTTGGAAGTAAAGCCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* *
698873 GGTTGGAGTATCCCCGATTCG-GAAAAATTGGTGTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATT-GTGAAAAATTGGTG-TTTTTAGAAATAAAACCGG
* * * * **
698926 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGA-AAATAAAATTGG
1 GGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTTAGAAATAAAACCGG
* * *
698977 AGTGGGAATATCCCCGATTG
1 GGTTGGAGTATCCCCGATTG
698997 CGGAGAATTG
Statistics
Matches: 422, Mismatches: 92, Indels: 51
0.75 0.16 0.09
Matches are distributed among these distances:
49 2 0.00
50 9 0.02
51 175 0.41
52 141 0.33
53 67 0.16
54 8 0.02
55 14 0.03
56 4 0.01
57 2 0.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (52 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAACCGG
Found at i:698673 original size:27 final size:28
Alignment explanation
Indices: 698610--698685 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
698600 GAAATAAAGC
***
698610 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAGGTAA
*
698638 CGGGGTTGGAGTATCCCCGATGA-TTAA
1 CGGGGTTGGAGTATCCCCGATGAGGTAA
698665 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
698686 TGTGAAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.18, C:0.21, G:0.37, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAGGTAA
Found at i:698792 original size:103 final size:102
Alignment explanation
Indices: 698406--698996 Score: 453
Period size: 104 Copynumber: 5.7 Consensus size: 102
698396 GAAATAATAA
* * * * * * * *
698406 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGAGGAAAATTAGTGTTTTGA-AAATAAAACCGGGGTTGGAGTATCC
** *
698471 CCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACCGG
65 CCGATT-GTGAAAAATTGGTGTTTTAG-AAATAAAACCGG
* *
698510 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTT-AGAAATAAAACCGGGGTTAGAGTATC
1 GGTTGGAGTATCCCCGATTGAGG-AAAATTAGTGTTTTGA-AAATAAAACCGGGGTTGGAGTATC
* * *** * * *
698574 CCCGATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
64 CCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* ** * *** ** *
698613 GGTTGGAGTATCCCC--TCGGAGGTAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGGGGTTGG
1 GGTTGGAGTATCCCCGAT-TGAGG-AA---AATT--AGTGT-TTTGAAAATAAAACCGGGGTTGG
*
698674 AGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAATCGG
58 AGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * * *
698719 AGTTGGAGTATCCCCAATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATT-GAGGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
* *
698784 CCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
65 CCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * * * * * * *
698822 GGTTGGAGTATCCCTGATT-ATGAGAAATCAATATTTTGGAAGTAAAGCCGGGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGAGGA-AAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
* *
698886 CCGATTCG-GAAAAATTGGTGTTTTTTGGAAATAAAATCGG
65 CCGATT-GTGAAAAATTGGTG--TTTTAGAAATAAAACCGG
* * ** * * *
698926 AGTTGGAGTATCCCCGATT-ATAGAAAATTAGTGTTTTGAAAATAAAATTGGAGTGGGAATATCC
1 GGTTGGAGTATCCCCGATTGA-GGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
698990 CCGATTG
65 CCGATTG
698997 CGGAGAATTG
Statistics
Matches: 385, Mismatches: 82, Indels: 41
0.76 0.16 0.08
Matches are distributed among these distances:
101 8 0.02
102 59 0.15
103 106 0.28
104 122 0.32
105 17 0.04
106 58 0.15
107 8 0.02
108 6 0.02
109 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (102 bp):
GGTTGGAGTATCCCCGATTGAGGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
CGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
Found at i:698794 original size:261 final size:262
Alignment explanation
Indices: 698348--698887 Score: 949
Period size: 260 Copynumber: 2.1 Consensus size: 262
698338 AGATAGTAAT
* *
698348 GGGGTTGGAGTATCCCCTTGAAGGTAACGGGGTTGGAGTATCCCCGATGAAATAATAAGGTTGGA
1 GGGGTTGGAGTATCCCCTCGAAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACAAGGTTGGA
* *
698413 GTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAGAGTTGGAGTATCCCCGATTA
66 GTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAGAGTTGGAGTATCCCCAATTA
698478 AAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATTAGT
131 AAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGG-AAAATTAGT
698543 GTTTTAGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAA
195 GTTTTAGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAA
698608 GCC
260 GCC
* * **
698611 GGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGATG-ATTAACGGGGTTGGA
1 GGGGTTGGAGTATCCCCTCGAAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACAAGGTTGGA
*
698675 GTATCCCCGATTGTGAAAAATTGGTG-TTTTAGAAATAAAATCGGAGTTGGAGTATCCCCAATTA
66 GTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAGAGTTGGAGTATCCCCAATTA
698739 AAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAATTAGTG
131 AAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAATTAGTG
* * *
698804 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCTGATTATGAGAAATCAATATTTTGGAAGTAAAG
196 TTTTAGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAG
698869 CC
261 CC
698871 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
698888 GATTCGGAAA
Statistics
Matches: 265, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
260 91 0.34
261 91 0.34
262 36 0.14
263 47 0.18
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (262 bp):
GGGGTTGGAGTATCCCCTCGAAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACAAGGTTGGA
GTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAGAGTTGGAGTATCCCCAATTA
AAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAATTAGTG
TTTTAGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAG
CC
Found at i:698887 original size:154 final size:154
Alignment explanation
Indices: 698407--698995 Score: 451
Period size: 155 Copynumber: 3.8 Consensus size: 154
698397 AAATAATAAG
* * * *
698407 GTTGGAGTATCCTCGATT-GTGAAAAATTGGTGTTTTT-AGAAATAAAATCAGAGTTGGAGTATC
1 GTTGGAGTATCCCCAATTAG-GAAAAATTGGTGTTTTTGA-AAATAAAACCGGAGTTGGAGTATC
* * *
698470 CCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAA
64 CCCGATTATA-GAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTAT-GAA
* * * *
698535 AAATTAGTGTTTTAGAAATAAAACCGGG
127 AAATCAATATTTTAGAAATAAAACCGGA
* * * * *** * * * *
698563 GTTAGAGTATCCCCGATTATGAGAAATCAAT-ATTTTGGAAATAAAGCCGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCAATTAGGAAAAATTGGTGTTTTTGAAAATAAAACCGGAGTTGGAGTAT-CC
* *** * *** ** * *
698627 CTCGGAGGTA-ACG-GGGTTGGAGTATCCCCGATGAT-TAA-CGGGGTTGGAGTATCCCCGATTG
65 C-C-GA-TTATA-GAAAATT--AGTGT-TTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTA
*** * *
698688 TGAAAAATTGGTGTTTTAGAAATAAAATCGGA
123 TGAAAAATCAATATTTTAGAAATAAAACCGGA
*
698720 GTTGGAGTATCCCCAATTAAAGG-AAAATTGGTG-TTTTGAAAATAAAACCGGGGTTGGAGTATC
1 GTTGGAGTATCCCCAATT--AGGAAAAATTGGTGTTTTTGAAAATAAAACCGGAGTTGGAGTATC
* * * *
698783 CCCGATTGTGGAAAATTAGTGTTTT-AGAAATAAAACCGGGGTTGGAGTATCCCTGATTATGAGA
64 CCCGATTATAGAAAATTAGTGTTTTGA-AAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAA
* * * *
698847 AATCAATATTTTGGAAGTAAAGCCGGG
128 AATCAATATTTTAGAAATAAAACCGGA
* * * *
698874 GTTGGAGTATCCCCGATTCGGAAAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GTTGGAGTATCCCCAATTAGGAAAAATTGGTG-TTTTTGAAAATAAAACCGGAGTTGGAGTATCC
** * * *
698939 CCGATTATAGAAAATTAGTGTTTTGAAAATAAAATTGGAGTGGGAATATCCCCGATT
65 CCGATTATAGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATT
698996 GCGGAGAATT
Statistics
Matches: 336, Mismatches: 76, Indels: 43
0.74 0.17 0.09
Matches are distributed among these distances:
151 1 0.00
152 4 0.01
153 16 0.05
154 62 0.18
155 102 0.30
156 28 0.08
157 50 0.15
158 60 0.18
159 9 0.03
160 4 0.01
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (154 bp):
GTTGGAGTATCCCCAATTAGGAAAAATTGGTGTTTTTGAAAATAAAACCGGAGTTGGAGTATCCC
CGATTATAGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAAT
CAATATTTTAGAAATAAAACCGGA
Found at i:701378 original size:13 final size:13
Alignment explanation
Indices: 701360--701385 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
701350 ACAAAGATTG
701360 ATGTATCGATACA
1 ATGTATCGATACA
701373 ATGTATCGATACA
1 ATGTATCGATACA
701386 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:701398 original size:21 final size:21
Alignment explanation
Indices: 701372--701413 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
701362 GTATCGATAC
701372 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
701393 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
701414 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:701462 original size:19 final size:19
Alignment explanation
Indices: 701438--701519 Score: 104
Period size: 19 Copynumber: 4.6 Consensus size: 19
701428 AGCGATACAT
*
701438 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
701457 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
701476 TGTATCGAT---ATA--T-
1 TGTATCGATACAACACTTA
701489 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
701508 TGTATCGATACA
1 TGTATCGATACA
701520 TTTTCTGTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
13 9 0.17
14 1 0.02
16 4 0.07
18 1 0.02
19 39 0.72
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:701493 original size:32 final size:32
Alignment explanation
Indices: 701457--701517 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
701447 ACAAAACTTA
701457 TGTATCGATACAACACTTATGTATCGATATAT
1 TGTATCGATACAACACTTATGTATCGATATAT
701489 TGTATCGATACAACACTTATGTATCGATA
1 TGTATCGATACAACACTTATGTATCGATA
701518 CATTTTCTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATATAT
Found at i:701586 original size:21 final size:21
Alignment explanation
Indices: 701560--701615 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
701550 GTTGGGACCT
701560 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
*
701581 TGTATCGATACATTCTATAAA
1 TGTATCGATACATTCTACAAA
701602 TGTATCGATACATT
1 TGTATCGATACATT
701616 TGGATAAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:704699 original size:15 final size:16
Alignment explanation
Indices: 704663--704705 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
704653 AAAGTCGAAA
704663 GCAAAAGCACAAAAAAT
1 GCAAAAGCA-AAAAAAT
704680 G-AAAAG-AAAAAAAT
1 GCAAAAGCAAAAAAAT
704694 GCAAAAGCAAAA
1 GCAAAAGCAAAA
704706 TAAAAAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.33
15 6 0.25
16 9 0.38
17 1 0.04
ACGTcount: A:0.70, C:0.12, G:0.14, T:0.05
Consensus pattern (16 bp):
GCAAAAGCAAAAAAAT
Found at i:706169 original size:58 final size:58
Alignment explanation
Indices: 705998--710004 Score: 3429
Period size: 58 Copynumber: 67.7 Consensus size: 58
705988 TTGCATTTCT
* * * ** *
705998 TTTCAAAGCCCACAGAAGTCGTTGGCAACTCATTTGAAAGCCCACGCAAGTTGGTGGCAACCC
1 TTTCAAAGCCCAC--AAGTCGGTGGCAACTCTTTTCAAAGCCCA--CAAGTCAGTGGC-ATCC
* * * * * *
706061 ATTTCAAAGCCCACACAACTTGGTGGCAAC-CAATTTT-AAAACCCATAAGTCAATGACATCC
1 -TTTCAAAG-CC-CACAAGTCGGTGGCAACTC--TTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
706122 TTTCAAAGCCCACGAGTTGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* *
706180 TTTCAAAGCCCACGAGTCGATGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
706238 TTTCAAAGCCCACAATTCAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * * * * **
706294 TTTCAAAGCCCACAAGTCAATGAC-A-TCATTTCACAGCCCACACAAGTCGGTGGCAACTAA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * ** *
706354 TTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCAACTCA
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * * ** *
706418 TTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAACCCACACAAGTTGGTGGCAACCC
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTC-AAAGCC-CACAAGTCAGTGGC-ATCC
* * **
706481 ATTTCAAAGCCCACACAAGTCGGTGGAAACCCAGTTCAAAGCCCACAAGTCAGTGGCATCC
1 -TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
706542 GTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAAAGGCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
706600 TTTCAAAGCCCACACGAGTCAGTGGTAACTCTTTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACA--AGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *** *
706660 TTTCAAAGCCCACGAGTCGATGGCAACTCTTTTCAAAGCGTGCAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * ** *
706718 TTTCAAAGCCCACAAGTCAGTAGC-ACTCTTTTCAAAGCCCACACAAGTTGGTGGCAACTCT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * * * *
706779 TTTCCAAGCCCAAAAGTCAGTAGC-A-TCTTTTCAAAGCCCACGAGTCGGTGGCAACTCT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGC-A-TCC
* * ** * * ** *
706837 TTTCAAAGCCCACAGGTCAGCAGC-A-TCCTTTCAAAGCCCACGAGTTGGTGGCAACTCT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGC-A-TCC
* * * * * *
706895 TTTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCCAAGCTCACGAGTC-GATGGCAACTC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAG-TGGCATC-C
* * *
706952 TTGTCAAAGCCCACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACAAGTCAGTGGCACCC
1 TT-TCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * **
707009 TTTCAAAGCCCACAAGTCAGTGGC-A-T-TATTTCAACGCCCACAAGTCAATGACATTA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCT-TTTCAAAGCCCACAAGTCAGTGGCATCC
* * * ** *
707065 TTTCACAGCCCACACAAGTCGGTGGCAACTCATTTGAAAGCCCACACAAGTTGGTGGCAACCC
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-ATCC
* * * ** *
707128 ATTTTCAAAGCCCACACAAGTTGGTGGCAACTCATTTGAAAGCCCACACAAGTTGGTGGCAACCC
1 --TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-ATCC
* * * * *
707193 ATTTCAAAGCCCACACAAGTCAGTGGTAACCCATTTCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* *
707254 TTTCAAAGCCCACGAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * *
707312 TTTCATAGCCCACGAGTTGGTGGCAACTCTTTTCAAAGCTCATAAGTCAGTGGCAT-C
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * *
707369 TGTTCAAAGCCCACAAGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATTCT
1 T-TTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCC
* **
707427 TTTCAAAGCCCATAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGCAGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * *
707485 TTTCAAAGACCACGAGTCAGTGACAACTCTTTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
707543 TTTCCAAGCCCACGAGTCGATGGCAACTCTTGTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * *
707601 TTTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAATG-CCAGAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * ** * * *
707656 TTTCAACA-CCCACAAGTCAATGAC-A-TCAATTCACAGCCCACACAAGTCGGTGGCAACTCA
1 TTTCAA-AGCCCACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * ** *
707716 TTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCAACTCA
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * * ** *
707780 TTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAACCCACACAAGTTGGTGGCAACCC
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTC-AAAGCC-CACAAGTCAGTGGC-ATCC
* * *
707843 ATTTCAAAGCCCACACAAGTCGGTGGTAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
707904 TTTCAAAGCCCACGAGTCAGTGGCAACTCTTCTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
707962 TTTCAAAGCCCACGAGTTGGAGGCAACTCTTTTCAAAGCTCACAAGTCAGTGGCA-CC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * *
708019 TTTCAAAGCCCACAAGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATTCT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCC
* * * *
708076 TTTCAAAGCCTACGAGTCGGTGGCAACTCTTTTCAAAGCCCGCAAGTCAGTAGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
708134 TTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTTAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
708192 TTTTC-AAGCCCACGAGTCGATGGCAACTCTTGTCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
708250 TTTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAAAGCCTACAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** ** * * * * *
708306 TTTCAGCGCCCACAAGTCAATGAC-A-TCATTTCACAGCCCACACAAGTCGGTGGCAACTCA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * ** *
708366 TTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCAACTCA
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCC
* * * * * ** *
708430 TTTGAAAGCCCACCCAAG-CTGGTGGTAACCCATTTCAAAACCCACACAAGTTGGTGGCAACCC
1 TTTCAAAGCCCA--CAAGTC-GGTGGCAACTCTTTTC-AAAGCC-CACAAGTCAGTGGC-ATCC
* * * *
708493 ATTTCAAAGCCCACACAAGTCGGTGGTAACCCATTTCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
708554 TTTCAAAGCCCACGAGTCAGTCGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* ** * * * *
708612 TTTCAAAGCCAATGAGTTGTTGGCAACTATTTTCAAAGCTCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* ** * *
708670 TTTCAAAGGCCACAAGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATTCT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCC
* ** * *
708727 TTTCAAAGCCCACACGATTTAGTGGCAACTTTTTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACA--AGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* *
708787 TTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * * *
708845 TTTCCAAGCCCACGAGTCGATGGCAACTCTTTTCGAAGCCCACATGTAAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* ** * * * *
708903 TTTCAAAGCCCATAAGTAAGTGGC-AC-CCTGTCAAAGCCCATAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* ** * * ** * *
708959 TTTCAAAGCCCACAGGTCAATGAC-A-TCATTTCACTGCCCACCCAAGTCGGTGGCAACTCA
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCA--CAAGTCAGTGGC-A-TCC
* * ** *
709019 TTTGAAAGCCCACACAAGTTGGTGGCAAC-CTATTTCAAAGCCCACATAAGTTGGTGGCAACTCA
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCT-TTTCAAAGCCCAC--AAGTCAGTGGC-A-TCC
* * * * * ** *
709083 TTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAACCCACACAAGTTGGTGGCAACCC
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTC-AAAGCC-CACAAGTCAGTGGC-ATCC
* * * *
709146 ATTTCAAAGTCCACACAAGTCGGTGGTAACCCATTTCAAAGCCCACAAGT-TGTGGCATCC
1 -TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* ** *
709206 TTTCAAAGCCCACGAGTCAATGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCGTCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
709264 TTTCCAAGCCCACGAGTTGGTGGCAACTCTTTTCAAAGCTCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * **
709322 TTTCAAAGCCCACAAGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATTAT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCC
* * * *
709379 TTTCAAAGCCCACACGATTCAGTGGCAACTTTTTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACA--AGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * *
709439 TTTCAAAGCCCACTTGTCGGTGGTAACTCTTTTCAAAGCCCATAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * * *
709497 TTTCGAAGCCCACGAGTCAGTGGCAACTCTTTTCAAAGGCCATAAGTCAGTGCCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* *
709555 TTTCAAAGCCCACACGAGTCAGTGGTAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACA--AGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* ** *
709615 TTTCAAAGCCCACGAGTCAATCGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-CC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
709672 TTTTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTAGCACTCT
1 -TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCC
* *
709730 TTTCAAAGCCCACACAAGTCGGTGGCAACTCTTTTCAAAGCCCAAAAGTCAGTAGCATCC
1 TTTCAAAG-CC-CACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
709790 TTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTGAGTAGCATCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* * * * *
709848 TTTCAATGTCCACGAGTCGGTGGTAACTCTTTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
** * * * *
709906 TTTCAAAGCCCACAAGTTAGTAGC-ATTCTTTCCAAAGCCCACAAG-CTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTC-AGTGGCA-TCC
709964 TTTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAAGC
1 TTTCAAAGCCCACA--AGTCGGTGGCAACTCTTTTCAAAGC
710005 TTACACAAGT
Statistics
Matches: 3360, Mismatches: 460, Indels: 249
0.83 0.11 0.06
Matches are distributed among these distances:
55 69 0.02
56 328 0.10
57 215 0.06
58 1483 0.44
59 122 0.04
60 254 0.08
61 139 0.04
62 117 0.03
63 35 0.01
64 506 0.15
65 84 0.03
66 8 0.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (58 bp):
TTTCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCC
Found at i:706192 original size:28 final size:28
Alignment explanation
Indices: 706102--710004 Score: 2589
Period size: 28 Copynumber: 132.0 Consensus size: 28
706092 AATTTTAAAA
* * * *
706102 CCCATAAGTCAATGACATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** *
706130 CCCACGAGTTGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
706160 CCCACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
706188 CCCACGAGTC-GATGGCAACTCTTTTCAAAG
1 CCCACAAGTCAG-TGGC-AC-CCTTTCAAAG
*
706218 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
*
706246 CCCACAATTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
706274 CCCACAAGTCAGTGGCATCATTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * * *
706302 CCCACAAGTCAATGACATCATTTCACAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** *
706330 CCCACACAAGTCGGTGGCAACTAATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
**
706362 CCCACACAAGTTGGTGGCAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
** * *
706394 CCCACACAAGTTGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
** *
706426 CCCACACAAGTTGGTGGCAACCCATTTCAAAAC
1 -CC-CACAAGTCAGTGGC-ACCC-TTTC-AAAG
**
706459 CCACACAAGTTGGTGGCAACCCATTTCAAAG
1 CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
* * *
706490 CCCACACAAGTCGGTGGAAACCCAGTTCAAAG
1 -CC-CACAAGTCAGTGG-CACCC-TTTCAAAG
* *
706522 CCCACAAGTCAGTGGCATCCGTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
706550 CCCACGAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* *
706580 GCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
706608 CCCACACGAGTCAGTGGTAACTCTTTTCAAAG
1 CCCACA--AGTCAGTGG-CAC-CCTTTCAAAG
* *
706640 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
706668 CCCACGAGTC-GATGGCAACTCTTTTCAAAG
1 CCCACAAGTCAG-TGGC-AC-CCTTTCAAAG
***
706698 CGTGCAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
706726 CCCACAAGTCAGTAGCACTCTTTTCAAAG
1 CCCACAAGTCAGTGGCAC-CCTTTCAAAG
** * *
706755 CCCACACAAGTTGGTGGCAACTCTTTTCCAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
* * * *
706787 CCCAAAAGTCAGTAGCATCTTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
706815 CCCACGAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* ** *
706845 CCCACAGGTCAGCAGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** *
706873 CCCACGAGTTGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
706903 CCCACAAGTCAGTGGCACCCTTTCCAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
706931 CTCACGAGTC-GATGGCAACTCTTGTCAAAG
1 CCCACAAGTCAG-TGGC-ACCCTT-TCAAAG
*
706961 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
706989 CCCACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
*** *
707017 CCCACAAGTCAGTGGCATTATTTCAACG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *** *
707045 CCCACAAGTCAATGACATTATTTCACAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
707073 CCCACACAAGTCGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
**
707105 CCCACACAAGTTGGTGGCAACCCATTTTCAAAG
1 -CC-CACAAGTCAGTGGC-ACCC--TTTCAAAG
** * *
707138 CCCACACAAGTTGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
**
707170 CCCACACAAGTTGGTGGCAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
*
707202 CCCACACAAGTCAGTGGTAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGG-CACCC-TTTCAAAG
* *
707234 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
707262 CCCACGAGTCAGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* *
707292 CCCACAAGTCAGTGGCATCCTTTCATAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** *
707320 CCCACGAGTTGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* * *
707350 CTCATAAGTCAGTGGCA-TCTGTTCAAAG
1 CCCACAAGTCAGTGGCACCCT-TTCAAAG
*
707378 CCCACAAGTTAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
707406 CCCACAAGTCAGTGGCATTCTTTTCAAAG
1 CCCACAAGTCAGTGGCA-CCCTTTCAAAG
* * *
707435 CCCATAAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
** *
707465 CCCACAAGTCAGCAGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * *
707493 ACCACGAGTCAGTGACAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
707523 CCCACAAGTCAGTGGCACCCTTTCCAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
707551 CCCACGAGTC-GATGGCAACTCTTGTCAAAG
1 CCCACAAGTCAG-TGGC-ACCCTT-TCAAAG
*
707581 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
*
707609 CCCACAAGTCAGTGGCACCCTTTCAATG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
707637 -CCAGAAGTCAGTGGCATCATTTCAACA-
1 CCCACAAGTCAGTGGCACCCTTTCAA-AG
* * * ** *
707664 CCCACAAGTCAATGACATCAATTCACAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
707692 CCCACACAAGTCGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
**
707724 CCCACACAAGTTGGTGGCAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
** * *
707756 CCCACACAAGTTGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
** *
707788 CCCACACAAGTTGGTGGCAACCCATTTCAAAAC
1 -CC-CACAAGTCAGTGGC-ACCC-TTTC-AAAG
**
707821 CCACACAAGTTGGTGGCAACCCATTTCAAAG
1 CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
* *
707852 CCCACACAAGTCGGTGGTAACCCTTTTCAAAG
1 -CC-CACAAGTCAGTGG-CACCC-TTTCAAAG
* *
707884 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
707912 CCCACGAGTCAGTGGCAACTCTTCTCAAAG
1 CCCACAAGTCAGTGGC-ACCCTT-TCAAAG
*
707942 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** * *
707970 CCCACGAGTTGGAGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
708000 CTCACAAGTCAGTGGCA-CCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
*
708027 CCCACAAGTTAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
708055 CCCACAAGTCAGTGGCATTCTTTTCAAAG
1 CCCACAAGTCAGTGGCA-CCCTTTCAAAG
* * * *
708084 CCTACGAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* * *
708114 CCCGCAAGTCAGTAGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * *
708142 CCCACGAGTCGGTGGCAACTCTTTTTAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
708172 CCCACAAGTCAGTGGCACCCTTTTC-AAG
1 CCCACAAGTCAGTGGCACCC-TTTCAAAG
* *
708200 CCCACGAGTC-GATGGCAACTCTTGTCAAAG
1 CCCACAAGTCAG-TGGC-ACCCTT-TCAAAG
* *
708230 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
708258 CCCACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * **
708286 CCTACAAGTCAGTGGCATCATTTCAGCG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * * *
708314 CCCACAAGTCAATGACATCATTTCACAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708342 CCCACACAAGTCGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
**
708374 CCCACACAAGTTGGTGGCAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
** * *
708406 CCCACACAAGTTGGTGGCAACTCATTTGAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
* * *
708438 CCCACCCAAG-CTGGTGGTAACCCATTTCAAAAC
1 CCCA--CAAGTC-AGTGG-CACCC-TTTC-AAAG
**
708471 CCACACAAGTTGGTGGCAACCCATTTCAAAG
1 CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
* *
708502 CCCACACAAGTCGGTGGTAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGG-CACCC-TTTCAAAG
* *
708534 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708562 CCCACGAGTCAGTCGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
708592 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** * **
708620 CCAATGAGT-TGTTGGCAACTATTTTCAAAG
1 CCCACAAGTCAG-TGGC-AC-CCTTTCAAAG
* *
708650 CTCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
708678 GCCACAAGTTAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
708706 CCCACAAGTCAGTGGCATTCTTTTCAAAG
1 CCCACAAGTCAGTGGCA-CCCTTTCAAAG
* * **
708735 CCCACACGATTTAGTGGCAACTTTTTTCAAAG
1 CCCACA--AGTCAGTGGC-AC-CCTTTCAAAG
* *
708767 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708795 CCCACGAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
708825 CCCACAAGTCAGTGGCACCCTTTCCAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708853 CCCACGAGTC-GATGGCAACTCTTTTCGAAG
1 CCCACAAGTCAG-TGGC-AC-CCTTTCAAAG
* * *
708883 CCCACATGTAAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708911 CCCATAAGTAAGTGGCACCCTGTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708939 CCCATAAGTCAGTGGCATCATTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * * * **
708967 CCCACAGGTCAATGACATCATTTCACTG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
708995 CCCACCCAAGTCGGTGGCAACTCATTTGAAAG
1 CCCA--CAAGTCAGTGGC-AC-CCTTTCAAAG
** *
709027 CCCACACAAGTTGGTGGCAACCTATTTCAAAG
1 -CC-CACAAGTCAGTGGC-ACC-CTTTCAAAG
** * *
709059 CCCACATAAGTTGGTGGCAACTCATTTGAAAG
1 CCCAC--AAGTCAGTGGC-AC-CCTTTCAAAG
** *
709091 CCCACACAAGTTGGTGGCAACCCATTTCAAAAC
1 -CC-CACAAGTCAGTGGC-ACCC-TTTC-AAAG
**
709124 CCACACAAGTTGGTGGCAACCCATTTCAAAG
1 CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG
* *
709155 TCCACACAAGTCGGTGGTAACCCATTTCAAAG
1 -CC-CACAAGTCAGTGG-CACCC-TTTCAAAG
* *
709187 CCCACAAGT-TGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
709214 CCCACGAGTCAATGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
** *
709244 CCCACAAGTCAGTGGCGTCCTTTCCAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* ** *
709272 CCCACGAGTTGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* *
709302 CTCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
*
709330 CCCACAAGTTAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
***
709358 CCCACAAGTCAGTGGCATTATTTTCAAAG
1 CCCACAAGTCAGTGGCA-CCCTTTCAAAG
* **
709387 CCCACACGATTCAGTGGCAACTTTTTTCAAAG
1 CCCACA--AGTCAGTGGC-AC-CCTTTCAAAG
* *
709419 CCCACAAGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
** * * *
709447 CCCACTTGTCGGTGGTAACTCTTTTCAAAG
1 CCCACAAGTCAGTGG-CAC-CCTTTCAAAG
* * *
709477 CCCATAAGTCAGTGGCATCCTTTCGAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
709505 CCCACGAGTCAGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* * * *
709535 GCCATAAGTCAGTGCCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
709563 CCCACACGAGTCAGTGGTAACTCTTTTCAAAG
1 CCCACA--AGTCAGTGG-CAC-CCTTTCAAAG
*
709595 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * *
709623 CCCACGAGTCAATCGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
709653 CCCACAAGTCAGTGGCACCTTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
709681 CCCACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* *
709709 CCCACAAGTCAGTAGCACTCTTTTCAAAG
1 CCCACAAGTCAGTGGCAC-CCTTTCAAAG
* *
709738 CCCACACAAGTCGGTGGCAACTCTTTTCAAAG
1 -CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG
* * *
709770 CCCAAAAGTCAGTAGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * *
709798 CCCACGAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACAAGTCAGTGGC-AC-CCTTTCAAAG
* * * *
709828 CCCACAAGTGAGTAGCATCCTTTCAATG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * * * *
709856 TCCACGAGTCGGTGGTAACTCTTTTCAAAG
1 CCCACAAGTCAGTGG-CAC-CCTTTCAAAG
709886 CCCACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCACCCTTTCAAAG
* * **
709914 CCCACAAGTTAGTAGCATTCTTTCCAAAG
1 CCCACAAGTCAGTGGCACCCTTT-CAAAG
*
709943 CCCACAAG-CTAGTGGCACTCTTTTCAAAG
1 CCCACAAGTC-AGTGGCAC-CCTTTCAAAG
* *
709972 CCCACACGAGTCGGTGGCAACTCTTTTCAAAG
1 CCCACA--AGTCAGTGGC-AC-CCTTTCAAAG
710004 C
1 C
710005 TTACACAAGT
Statistics
Matches: 3148, Mismatches: 551, Indels: 348
0.78 0.14 0.09
Matches are distributed among these distances:
27 71 0.02
28 1188 0.38
29 246 0.08
30 767 0.24
31 100 0.03
32 718 0.23
33 50 0.02
34 8 0.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (28 bp):
CCCACAAGTCAGTGGCACCCTTTCAAAG
Found at i:710935 original size:20 final size:20
Alignment explanation
Indices: 710912--710986 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
710902 ACGTACCCAG
*
710912 ATGTATCGATAAATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
710932 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
710952 ATGTATTGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
710972 ATGTATCGATACATT
1 ATGTATCGATACATT
710987 CTGCCTTTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:711926 original size:20 final size:21
Alignment explanation
Indices: 711894--711932 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
711884 AGCCTTTGAC
*
711894 CATGCATTTTTTATTATGTTT
1 CATGCATTTTTTAATATGTTT
711915 CATGCA-TTTTTAATATGT
1 CATGCATTTTTTAATATGT
711933 CCAGCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.56
Consensus pattern (21 bp):
CATGCATTTTTTAATATGTTT
Found at i:717434 original size:79 final size:78
Alignment explanation
Indices: 717335--717595 Score: 262
Period size: 79 Copynumber: 3.3 Consensus size: 78
717325 ATATTTTGAG
* * * * *
717335 ATAAAATCGAGGTTGAAGTATCCCGTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAA
1 ATAAAACCGAGGTTGAAGTATCCCCTC-GAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAA
717400 TCAATGTTTTGGAA
65 TCAATGTTTTGGAA
* * * *
717414 ATAAAACCGAGGTTGTAGTATCCCCTCGAAAACAACGGGGTCAGAGTATCCTCGATTAT-AGAAA
1 ATAAAACCGAGGTTGAAGTATCCCCTCG-AAATAACGGGGTTAGAGTATCCCCGATTATGA-AAA
**
717478 ATTGATAG-TTTGGAA
64 ATCAAT-GTTTTGGAA
* * * *
717493 ATAAAATC-ACGGTTGAAGTATCCCCTTGGAAATAACGGGGATAGAGTATCCCCAATTATG-AAA
1 ATAAAACCGA-GGTTGAAGTATCCCC-TCGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAA
* *
717556 ATCAGTGTTTTGAAA
64 ATCAATGTTTTGGAA
*
717571 ATAAAACCGGGGTTTG-AGTATCCCC
1 ATAAAACCGAGG-TTGAAGTATCCCC
717596 AATTGTGAGA
Statistics
Matches: 148, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
77 1 0.01
78 33 0.22
79 111 0.75
80 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (78 bp):
ATAAAACCGAGGTTGAAGTATCCCCTCGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAAT
CAATGTTTTGGAA
Found at i:717626 original size:51 final size:50
Alignment explanation
Indices: 717536--717697 Score: 200
Period size: 51 Copynumber: 3.2 Consensus size: 50
717526 AACGGGGATA
* * * *
717536 GAGTATCCCCAATTATGAAAATCAGTGTTTTGAAAATAAAACCGGGGTTT
1 GAGTATCCCCAATTGTGAAAATCAATGTTTTGAAAATAAAATCGGGGTTG
717586 GAGTATCCCCAATTGTGAGAAATCAATGTTTT-AGAAATAAAATCGGGGTTG
1 GAGTATCCCCAATTGTGA-AAATCAATGTTTTGA-AAATAAAATCGGGGTTG
*** ** *
717637 GAGTATCCTTGATTGTGCAAAATTGATGTTTTGAAAATAAAATCGAGGTTG
1 GAGTATCCCCAATTGTG-AAAATCAATGTTTTGAAAATAAAATCGGGGTTG
717688 GAGTATCCCC
1 GAGTATCCCC
717698 TTGGAAATAA
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
50 18 0.19
51 76 0.79
52 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (50 bp):
GAGTATCCCCAATTGTGAAAATCAATGTTTTGAAAATAAAATCGGGGTTG
Found at i:717782 original size:78 final size:79
Alignment explanation
Indices: 717633--717785 Score: 218
Period size: 79 Copynumber: 1.9 Consensus size: 79
717623 TAAAATCGGG
** *
717633 GTTGGAGTATCCTTGATTGTGCAAAATTGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCC
1 GTTGGAGTATCCCGGATTATGCAAAATTGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCC
*
717698 TTGGAAATAACGGA
66 TCGGAAATAACGGA
* * * * *
717712 GTTGGAGTATCCCGGATTATGGAAAATTGGTGTTTTGGAAA-GAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCGGATTATGCAAAATTGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCC
717776 TCGGAAATAA
66 TCGGAAATAA
717786 AAATATGAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
78 30 0.46
79 35 0.54
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (79 bp):
GTTGGAGTATCCCGGATTATGCAAAATTGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCC
TCGGAAATAACGGA
Found at i:718100 original size:9 final size:9
Alignment explanation
Indices: 718081--718113 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
718071 GGTCAATCTA
718081 AAAATATTCC
1 AAAA-ATTCC
718091 AAAAATTCC
1 AAAAATTCC
718100 AAAAATTCC
1 AAAAATTCC
718109 AAAAA
1 AAAAA
718114 ATCGTTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 19 0.83
10 4 0.17
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAATTCC
Found at i:720087 original size:20 final size:20
Alignment explanation
Indices: 720062--720121 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
720052 CTGCCAATCT
720062 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATC
*
720082 CATGTATCGATACAATTA-A
1 CATGTATCGATACAATTATC
720101 CATGTATCGATACAATGTATC
1 CATGTATCGATACAAT-TATC
720122 GATACAAAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 16 0.44
20 20 0.56
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:720120 original size:13 final size:13
Alignment explanation
Indices: 720102--720128 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
720092 TACAATTAAC
720102 ATGTATCGATACA
1 ATGTATCGATACA
720115 ATGTATCGATACA
1 ATGTATCGATACA
720128 A
1 A
720129 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:722567 original size:13 final size:13
Alignment explanation
Indices: 722549--722576 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
722539 AAATAGTACC
722549 CAATGTATCGATA
1 CAATGTATCGATA
722562 CAATGTATCGATA
1 CAATGTATCGATA
722575 CA
1 CA
722577 TTCTGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:722709 original size:11 final size:11
Alignment explanation
Indices: 722695--722724 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
722685 CAAATTCATC
722695 CAAAATCAAGA
1 CAAAATCAAGA
722706 CAAAATCAAGA
1 CAAAATCAAGA
722717 CAAAATCA
1 CAAAATCA
722725 TCAAAAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.63, C:0.20, G:0.07, T:0.10
Consensus pattern (11 bp):
CAAAATCAAGA
Found at i:729563 original size:50 final size:50
Alignment explanation
Indices: 729473--729656 Score: 235
Period size: 50 Copynumber: 3.7 Consensus size: 50
729463 AAAATGCCTA
* * ** *
729473 AATGTATCGATACATTG-AGAAATGTATCAAGACATCTGGGTAAAACCCAG
1 AATGTATCGATACAATGAAG-GATGTATTGATACATCTGGGTAAAACCCAG
* * *
729523 AATGTATTGATACAATGAAGGATTTATTGATACATTTGGGTAAAACCCAG
1 AATGTATCGATACAATGAAGGATGTATTGATACATCTGGGTAAAACCCAG
* * * *
729573 AATGTACCGATACAATGAAGGATGTATTGATGCATCTAGGTAAAACCCAA
1 AATGTATCGATACAATGAAGGATGTATTGATACATCTGGGTAAAACCCAG
*
729623 AATGTATCGATACAATGAAGGATGTATCGATACA
1 AATGTATCGATACAATGAAGGATGTATTGATACA
729657 AATTGTGAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
50 113 0.98
51 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (50 bp):
AATGTATCGATACAATGAAGGATGTATTGATACATCTGGGTAAAACCCAG
Found at i:731050 original size:28 final size:28
Alignment explanation
Indices: 731019--731081 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
731009 GGGATTTGAA
*
731019 TATCCCTTCGAAAATAACGGGGTTGGAG
1 TATCCCCTCGAAAATAACGGGGTTGGAG
731047 TATCCCCTCGAAAATAACGGGGTTGGAG
1 TATCCCCTCGAAAATAACGGGGTTGGAG
731075 TATCCCC
1 TATCCCC
731082 GATTATGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (28 bp):
TATCCCCTCGAAAATAACGGGGTTGGAG
Found at i:731105 original size:107 final size:106
Alignment explanation
Indices: 730924--731157 Score: 344
Period size: 107 Copynumber: 2.2 Consensus size: 106
730914 TTTTGGAGAT
* * *
730924 AATAATGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
1 AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATC
* * * *
730989 GATGATTTAGAAATAAAATCGGGATTTGAATATCCCTTCGAA
66 GATGATTTAGAAAT-AAACCGGGATTAGAATATCCCCTCAAA
* *
731031 AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATT
1 AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATC
* *
731096 GAT-ATTTTAGAAATAAACCGGGGTTAGAGTATCCCCTCAAA
66 GATGA-TTTAGAAATAAACCGGGATTAGAATATCCCCTCAAA
731137 AATAACGGGGTTGGAGTATCC
1 AATAACGGGGTTGGAGTATCC
731158 TCGATTATGA
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
106 43 0.37
107 72 0.63
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (106 bp):
AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATC
GATGATTTAGAAATAAACCGGGATTAGAATATCCCCTCAAA
Found at i:731165 original size:78 final size:78
Alignment explanation
Indices: 731036--731365 Score: 445
Period size: 78 Copynumber: 4.2 Consensus size: 78
731026 TCGAAAATAA
731036 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATAT
731101 TTTAGAAATAAAC
66 TTTAGAAATAAAC
* * * *
731114 CGGGGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATAT
731179 TTTAGAAATAAAGC
66 TTTAGAAATAAA-C
* * * *
731193 CGAGGTTGGGGTATCCCCTCGAAAATAACTGGGGTTGGAGTATCCCCG---ATGAAAAATTGATG
1 CGGGGTTGGAGTATCCCCTCGAAAATAAC-GGGGTTGGAGTATCCCCGATTATGAGAAATTGATA
731255 TTTTAGAAATAAAAC
65 TTTTAGAAAT-AAAC
* * * * *
731270 CGGGGTTGGAGTGTCCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATTATGA-AATTTCGGTG
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATT-GATA
*
731334 TTTT-GAAATAAAAT
65 TTTTAGAAAT-AAAC
*
731348 CGGAGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
731366 GATTATAGAA
Statistics
Matches: 224, Mismatches: 21, Indels: 14
0.86 0.08 0.05
Matches are distributed among these distances:
76 17 0.08
77 48 0.21
78 105 0.47
79 37 0.17
80 17 0.08
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATAT
TTTAGAAATAAAC
Found at i:731412 original size:51 final size:50
Alignment explanation
Indices: 731306--731467 Score: 195
Period size: 51 Copynumber: 3.2 Consensus size: 50
731296 AACGGGGTTA
* *
731306 GAGTATCCCCGATTAT-GAAATTTCGGTGTTTTGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATAGAAA-ATAGGTGTTTTGAAATAAAATCGGAGTTG
731356 GAGTATCCCCGATTATAGAAAATAGGTGTTTTAGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATAGAAAATAGGTGTTTT-GAAATAAAATCGGAGTTG
*** * *
731407 GAGTATCCCCGATTA-AGAAAAATTCATGTTTTGGAAATGAAACTGGGA-TTG
1 GAGTATCCCCGATTATAG-AAAATAGGTGTTTT-GAAAT-AAAATCGGAGTTG
731458 GAGTATCCCC
1 GAGTATCCCC
731468 TAGATGAAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
50 27 0.27
51 66 0.66
52 7 0.07
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (50 bp):
GAGTATCCCCGATTATAGAAAATAGGTGTTTTGAAATAAAATCGGAGTTG
Found at i:733779 original size:20 final size:20
Alignment explanation
Indices: 733754--733807 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
733744 AAAATGCCTG
*
733754 AATGTATCGATACAATG-AGC
1 AATGTATCGATACAATGCA-A
733774 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATGCAA
733794 AATGTATCGATACA
1 AATGTATCGATACA
733808 TCTGGGTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAATGCAA
Found at i:734514 original size:40 final size:40
Alignment explanation
Indices: 734430--734648 Score: 138
Period size: 40 Copynumber: 5.5 Consensus size: 40
734420 GTCCCACTTT
* *
734430 TTGAGGACAAAGG-AAAAGAGAAGGAAATAGGT-CTCGC-TC
1 TTGAGGACAAAGGAAAAAGAAAAGGAAA-ATGTCCT-GCTTC
734469 ATTGAGGACAAAGGAAAAAGAAAAGGAAAATGTCCTGCTTC
1 -TTGAGGACAAAGGAAAAAGAAAAGGAAAATGTCCTGCTTC
* ** *
734510 TTGA-GAGCAAA-G----TGAAAAGGAGTACGTCCTGCTT-
1 TTGAGGA-CAAAGGAAAAAGAAAAGGAAAATGTCCTGCTTC
* *
734544 TTCGAGGATAAAGGAAAAAAGGAAAACG-AAATGCGTCCTGC-TC
1 TT-GAGGACAAAGG-AAAAA-GAAAAGGAAAAT--GTCCTGCTTC
* * * *
734587 TTTGAGGACAAAAGAAAAAGAAAAGGAAAGTGTACTACTTC
1 -TTGAGGACAAAGGAAAAAGAAAAGGAAAATGTCCTGCTTC
*
734628 TTGAGGGCAAAGTGAAAAAGA
1 TTGAGGACAAAG-GAAAAAGA
734649 GTACGTCCTG
Statistics
Matches: 139, Mismatches: 20, Indels: 39
0.70 0.10 0.20
Matches are distributed among these distances:
34 2 0.01
35 23 0.17
36 3 0.02
39 3 0.02
40 41 0.29
41 34 0.24
42 15 0.11
43 16 0.12
44 2 0.01
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAGAAAAGGAAAATGTCCTGCTTC
Found at i:734628 original size:118 final size:118
Alignment explanation
Indices: 734464--734734 Score: 404
Period size: 118 Copynumber: 2.3 Consensus size: 118
734454 AAATAGGTCT
* * * * * *
734464 CGCTCATTGAGGACAAAGGAAAAAGAAAAGGAAAATGTCCTGCTTCTTGAGAGCAAAGTGAAAAG
1 CGCTCTTTGAGGACAAAAGAAAAAGAAAAGGAAAGTGTACTACTTCTTGAGAGCAAAGTGAAAAA
*
734529 GAGTACGTCCTGCTTTTCGAGGATAAAGGAAAAAAGGAAAACGAAATGCGT-C
66 GAGTACGTCCTGCTTTTCGAGGATAAAGGAAAAAAGGAAAACGAAATGCATGC
*
734581 CTGCTCTTTGAGGACAAAAGAAAAAGAAAAGGAAAGTGTACTACTTCTTGAGGGCAAAGTGAAAA
1 C-GCTCTTTGAGGACAAAAGAAAAAGAAAAGGAAAGTGTACTACTTCTTGAGAGCAAAGTGAAAA
* *
734646 AGAGTACGTCCTGCTTTTTGAGGGTAAAGGAAAAAAGGAAAACGAAATGCATGC
65 AGAGTACGTCCTGCTTTTCGAGGATAAAGGAAAAAAGGAAAACGAAATGCATGC
* *
734700 CACTCTTTGAGGACAAAA-AAGAAGAAAA-GAAAGTG
1 CGCTCTTTGAGGACAAAAGAAAAAGAAAAGGAAAGTG
734735 CGTCCTGCTC
Statistics
Matches: 140, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
116 7 0.05
117 10 0.07
118 121 0.86
119 2 0.01
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.18
Consensus pattern (118 bp):
CGCTCTTTGAGGACAAAAGAAAAAGAAAAGGAAAGTGTACTACTTCTTGAGAGCAAAGTGAAAAA
GAGTACGTCCTGCTTTTCGAGGATAAAGGAAAAAAGGAAAACGAAATGCATGC
Done.