Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1763736
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 7 of 14
Found at i:734746 original size:40 final size:41
Alignment explanation
Indices: 734534--734843 Score: 118
Period size: 40 Copynumber: 7.6 Consensus size: 41
734524 AAAAGGAGTA
* *
734534 CGTCCTGCT-TTTCGAGGATAAAGGAAAAAAGGAAAACGAAA-TG
1 CGTCCTGCTCTTT-GAGGACAAA--AAAGAA-GAAAACGAAAGTG
* *
734577 CGTCCTGCTCTTTGAGGACAAAAGAAAAAGAAAAGGAAAGT-
1 CGTCCTGCTCTTTGAGGACAAAA-AAGAAGAAAACGAAAGTG
* * * * * *
734618 -GTACTACT-TCTTGAGGGC---AAAG-TGAAAA--AGAGTA
1 CGTCCTGCTCT-TTGAGGACAAAAAAGAAGAAAACGAAAGTG
* ** *
734652 CGTCCTGCTTTTTGAGGGTAAAGGAAAAAAGGAAAACGAAA-TG
1 CGTCCTGCTCTTTGAGGACAAA--AAAGAA-GAAAACGAAAGTG
* *
734695 CATGCC-ACTCTTTGAGGACAAAAAAGAAGAAAA-GAAAGTG
1 CGT-CCTGCTCTTTGAGGACAAAAAAGAAGAAAACGAAAGTG
* *
734735 CGTCCTGCTCTTTGAGGATAAAAGGGAA-AAGAAGGGAATG-AAGTG
1 CGTCCTGCTCTTTGAGGACAAAA---AAGAAGAA---AACGAAAGTG
* * * **
734780 TGTCCTGCTCTTTGAGGAC---AAAGGAGAAAAGGAAAAAG
1 CGTCCTGCTCTTTGAGGACAAAAAAGAAGAAAACGAAAGTG
* *
734818 CATCCTGCTCTTTGAGGACTAAAAAG
1 CGTCCTGCTCTTTGAGGACAAAAAAG
734844 TGCCACCAAC
Statistics
Matches: 204, Mismatches: 32, Indels: 64
0.68 0.11 0.21
Matches are distributed among these distances:
33 4 0.02
35 18 0.09
36 3 0.01
37 4 0.02
38 20 0.10
39 9 0.04
40 44 0.22
41 19 0.09
42 17 0.08
43 34 0.17
44 7 0.03
45 24 0.12
46 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (41 bp):
CGTCCTGCTCTTTGAGGACAAAAAAGAAGAAAACGAAAGTG
Found at i:734765 original size:45 final size:45
Alignment explanation
Indices: 734716--734810 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 45
734706 TTGAGGACAA
734716 AAAAGAA-GAAAAGAAAGTGCGTCCTGCTCTTTGAGGATAAAAGG-G
1 AAAAGAAGGAAAAG-AAGTGCGTCCTGCTCTTTGAGGA-AAAAGGAG
* * * *
734761 AAAAGAAGGGAATGAAGTGTGTCCTGCTCTTTGAGGACAAAGGAG
1 AAAAGAAGGAAAAGAAGTGCGTCCTGCTCTTTGAGGAAAAAGGAG
734806 AAAAG
1 AAAAG
734811 GAAAAAGCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
44 5 0.11
45 35 0.80
46 4 0.09
ACGTcount: A:0.41, C:0.11, G:0.31, T:0.18
Consensus pattern (45 bp):
AAAAGAAGGAAAAGAAGTGCGTCCTGCTCTTTGAGGAAAAAGGAG
Found at i:734885 original size:61 final size:61
Alignment explanation
Indices: 734805--735016 Score: 260
Period size: 61 Copynumber: 3.6 Consensus size: 61
734795 GGACAAAGGA
* *
734805 GAAAAGGAAAAAGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1 GAAAA-GAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* ** * *
734867 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTATGGGCTTT
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
734928 GCAAAGAGAAA-GCATCCTGCTCTTTGAGGAC-GAGAAGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGA-AAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
734988 ------AAAAGGCATCCTGCTCTTTGAGGACTAAA
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAA
735017 GGGCGAAAGG
Statistics
Matches: 132, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
53 3 0.02
54 21 0.16
55 1 0.01
60 25 0.19
61 74 0.56
62 8 0.06
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (61 bp):
GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:735260 original size:111 final size:111
Alignment explanation
Indices: 735058--735333 Score: 444
Period size: 111 Copynumber: 2.5 Consensus size: 111
735048 GGATTGGGAA
* *
735058 GTGCCACCAACTTGTGTGGGCTTCGAAAGGTATCCTACTCTTTGAGGACTAAAAAAAAATGCCAC
1 GTGCCACCAACTTGTGTGGGCTT-TAAAGGCATCCTACTCTTTGAGGACT-AAAAAAAATGCCAC
* *
735123 CAACTTGTGTGGGCTTTGAAATGCATCCTACTCTTTGAGGACTGAAGG
64 CAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAGG
* * *
735171 GTGCCACCAACTTGTGTAGGCTTTAAAGGCCTCCTACTCCTTGAGGACTAAAAAAAATGCCACCA
1 GTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTACTCTTTGAGGACTAAAAAAAATGCCACCA
735236 ACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAGG
66 ACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAGG
* * *
735282 GTACCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCTTTGAGGACTAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTACTCTTTGAGGACTAAA
735334 GGGCGAAATG
Statistics
Matches: 151, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
111 107 0.71
112 22 0.15
113 22 0.15
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (111 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTACTCTTTGAGGACTAAAAAAAATGCCACCA
ACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAGG
Found at i:735336 original size:54 final size:54
Alignment explanation
Indices: 735058--735336 Score: 333
Period size: 54 Copynumber: 5.0 Consensus size: 54
735048 GGATTGGGAA
* * **
735058 GTGCCACCAACTTGTGTGGGCTTCGAAAGGTATCCTACTCTTTGAGGACTAAAAAAAA
1 GTGCCACCAACTTGTGTGGGCTT-TAAAGGCATCCTACTCTTTGAGGACT---AAAGG
* * *
735116 ATGCCACCAACTTGTGTGGGCTTTGAAATGCATCCTACTCTTTGAGGACTGAAGG
1 GTGCCACCAACTTGTGTGGGCTTT-AAAGGCATCCTACTCTTTGAGGACTAAAGG
* * * **
735171 GTGCCACCAACTTGTGTAGGCTTTAAAGGCCTCCTACTCCTTGAGGACTAAAAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTACTCTTTGAGGACT--AAAGG
* *
735227 ATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAGG
1 GTGCCACCAACTTGTGTGGGCTTT-AAAGGCATCCTACTCTTTGAGGACTAAAGG
* * *
735282 GTACCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
1 GTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTACTCTTTGAGGACTAAAGG
735336 G
1 G
735337 CGAAATGAGA
Statistics
Matches: 190, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
54 50 0.26
55 48 0.25
56 24 0.13
57 23 0.12
58 45 0.24
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (54 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTACTCTTTGAGGACTAAAGG
Found at i:735510 original size:211 final size:210
Alignment explanation
Indices: 735148--735676 Score: 815
Period size: 211 Copynumber: 2.5 Consensus size: 210
735138 TTGAAATGCA
* * * *
735148 TCCTACTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTAGGCTTT--AA--AG---GCCTCCT
1 TCCTGCTCTTTGAGGACT-AAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCT
* *
735206 ACTCCTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
65 GCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
*
735271 AGGACTGAAGGGTACCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
130 AGGACTGAAGGGTACCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTCTTTGAGGACTAAAGG
*
735336 GCGAAATGAGAGAACG
195 GCGAAAGGAGAGAACG
735352 TCCTGCTCTTTGAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCT
1 TCCTGCTCTTTGAGGACTAAG-AGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCT
* * *
735417 GCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
65 GCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
*
735482 AGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTCTTTGAGGACTAAAGG
130 AGGACTGAAGGGTACCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTCTTTGAGGACTAAAGG
*
735547 GCGAAAGGAGAGAGCG
195 GCGAAAGGAGAGAACG
*
735563 TCCTGCTCTTTGAGGACTAGGGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCT
1 TCCTGCTCTTTGAGGACTA-AGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCT
***
735628 GCTCTTTGAGGA-T-TGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG
65 GCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG
735677 AAAATGCGTC
Statistics
Matches: 298, Mismatches: 18, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
203 3 0.01
204 40 0.13
206 2 0.01
208 2 0.01
209 32 0.11
210 1 0.00
211 217 0.73
212 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (210 bp):
TCCTGCTCTTTGAGGACTAAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
CTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGA
GGACTGAAGGGTACCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTCTTTGAGGACTAAAGGG
CGAAAGGAGAGAACG
Found at i:735539 original size:322 final size:320
Alignment explanation
Indices: 734817--735544 Score: 950
Period size: 322 Copynumber: 2.2 Consensus size: 320
734807 AAAGGAAAAA
* ** * *
734817 GCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGT
1 GCATCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTT-------AAAGGCAT
** **
734882 CCTGCTCTTTGAGGACT--GGAAGGTGCCACCAACTTGTATGGGCTTTGCAAAGAGAAAGCATCC
59 CCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTATGGGCTTT-CAAAGAG--AGCATCC
* *
734945 TGCTCTTTGAGGACGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
121 TACTCTTTGAGGACGAGAAGTACCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
* * **
735010 GACTAAAGGGCGAAAGGAAAGAGCGTCCTGCTCTGTGAGGATTGGGAAGTGCCACCAACTTGTGT
186 GACTAAAGGGCGAAAGGAAAGAACGTCCTGCTCTGTGAGGACTAAGAAGTGCCACCAACTTGTGT
* *
735075 GGGCTTCGAAAGGTATCCTACTCTTTGAGGACTAAAAAAAAATGCCACCAACTTGTGTGGGCTTT
251 GGGCTTCGAAAAGCATCCTACTCTTTGAGGACTAAAAAAAAATGCCACCAACTTGTGTGGGCTTT
*
735140 GAAAT
316 GAAAG
* * * *
735145 GCATCCTACTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTAGGCTTTAAAGGCCTCCTACTC
1 GCATCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTC
* *
735210 CTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTT-AAA-AG-GCATCCTACTCTTTGA
66 TTTGAGGACTAAAAAAAATGCCACCAACTTGTATGGGCTTTCAAAGAGAGCATCCTACTCTTTGA
* *
735272 GGACTGA-AGGGTACCACCAACTTGTGTGGGCTTT-AAAGGCGTCCTGCTCTTTGAGGACTAAAG
131 GGAC-GAGA-AGTACCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAG
* * *
735335 GGCGAAATGAGAGAACGTCCTGCTCTTTGAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTTA
194 GGCGAAAGGAAAGAACGTCCTGCTCTGTGAGGACTAAGAAGTGCCACCAACTTGTGTGGGC-TT-
* *
735400 AAAGGAGAAAGCATCCTGCTCTTTGAGGACT-AAAAAAAATGCCACCAACTTGTGTGGGCTTTGA
257 ---CGA-AAAGCATCCTACTCTTTGAGGACTAAAAAAAAATGCCACCAACTTGTGTGGGCTTTGA
735464 AAG
318 AAG
*
735467 GCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTC
1 GCATCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTC
735532 TTTGAGGACTAAA
66 TTTGAGGACTAAA
735545 GGGCGAAAGG
Statistics
Matches: 354, Mismatches: 36, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
317 102 0.29
318 27 0.08
320 2 0.01
321 25 0.07
322 109 0.31
323 45 0.13
328 44 0.12
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (320 bp):
GCATCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCATCCTGCTC
TTTGAGGACTAAAAAAAATGCCACCAACTTGTATGGGCTTTCAAAGAGAGCATCCTACTCTTTGA
GGACGAGAAGTACCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGG
CGAAAGGAAAGAACGTCCTGCTCTGTGAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTCGAA
AAGCATCCTACTCTTTGAGGACTAAAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:735540 original size:54 final size:55
Alignment explanation
Indices: 735406--735547 Score: 207
Period size: 54 Copynumber: 2.6 Consensus size: 55
735396 TTTAAAAGGA
***
735406 GAAA-GCATCCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACT--AAAGGGTGCCACCAACTTGTGTGGGCTTT
* *
735462 GAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT
735517 -AAAGGCATCCTGCTCTTTGAGGACTAAAGGG
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAGGG
735548 CGAAAGGAGA
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 29 0.37
55 25 0.32
56 4 0.05
57 20 0.26
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (55 bp):
GAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT
Found at i:735708 original size:61 final size:61
Alignment explanation
Indices: 735550--735708 Score: 230
Period size: 61 Copynumber: 2.6 Consensus size: 61
735540 CTAAAGGGCG
* ** *
735550 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGGAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAAAGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTA
* * *
735611 AAAGGAGAAAGCATCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAAAGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTA
*
735672 AAAGGA-AAATGCGTCCTGCTTTTTGAGGACTAGAAAA
1 AAAGGAGAAA-GCGTCCTGCTCTTTGAGGACTAGAAAA
735709 GTGAAAGGGG
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
60 3 0.03
61 83 0.97
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (61 bp):
AAAGGAGAAAGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:736686 original size:1 final size:1
Alignment explanation
Indices: 736680--736764 Score: 89
Period size: 1 Copynumber: 85.0 Consensus size: 1
736670 CAGATTCTTC
* * * * * * * *
736680 TTTTTTTTTCTCTTTTTTTTTTGTTTTGTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
736745 TTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTT
736765 GAAAAAAATG
Statistics
Matches: 66, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.89
Consensus pattern (1 bp):
T
Found at i:736695 original size:12 final size:11
Alignment explanation
Indices: 736680--736765 Score: 99
Period size: 10 Copynumber: 8.0 Consensus size: 11
736670 CAGATTCTTC
*
736680 TTTTTTTTTCTC
1 TTTTTTTTT-TG
736692 TTTTTTTTTTG
1 TTTTTTTTTTG
736703 TTTTGTTTTTTG
1 TTTT-TTTTTTG
736715 -TTTTTTTTTG
1 TTTTTTTTTTG
*
736725 -TTTTTTTGT-
1 TTTTTTTTTTG
736734 TTTTTTTTTTG
1 TTTTTTTTTTG
*
736745 TTTTTTTGTT-
1 TTTTTTTTTTG
736755 TTTTTTTTTTG
1 TTTTTTTTTTG
736766 AAAAAAATGT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
10 32 0.49
11 17 0.26
12 16 0.25
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:736718 original size:20 final size:19
Alignment explanation
Indices: 736680--736763 Score: 109
Period size: 18 Copynumber: 4.5 Consensus size: 19
736670 CAGATTCTTC
* *
736680 TTTTTTTTTCTCTTTT-TT
1 TTTTTTTTTGTTTTTTGTT
*
736698 TTTTGTTTTGTTTTTTGTT
1 TTTTTTTTTGTTTTTTGTT
*
736717 TTTTTTTGT-TTTTTTGTT
1 TTTTTTTTTGTTTTTTGTT
736735 TTTTTTTTTGTTTTTTTGTT
1 TTTTTTTTTG-TTTTTTGTT
736755 TTTTTTTTT
1 TTTTTTTTT
736764 TGAAAAAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
18 30 0.53
19 9 0.16
20 18 0.32
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.89
Consensus pattern (19 bp):
TTTTTTTTTGTTTTTTGTT
Found at i:736731 original size:30 final size:29
Alignment explanation
Indices: 736695--736765 Score: 108
Period size: 28 Copynumber: 2.4 Consensus size: 29
736685 TTTTCTCTTT
*
736695 TTTTTTTGTTTTGTTTTTTGTTTTTTTTTG
1 TTTTTTTGTTTTGTTTTTT-TGTTTTTTTG
736725 TTTTTTTGTTTT-TTTTTTTGTTTTTTTG
1 TTTTTTTGTTTTGTTTTTTTGTTTTTTTG
*
736753 TTTTTTTTTTTTG
1 TTTTTTTGTTTTG
736766 AAAAAAATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 20 0.53
29 6 0.16
30 12 0.32
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (29 bp):
TTTTTTTGTTTTGTTTTTTTGTTTTTTTG
Found at i:736740 original size:42 final size:42
Alignment explanation
Indices: 736682--736765 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 42
736672 GATTCTTCTT
736682 TTTTTTTCTCTTTTTTTTTTGTTTTGTTT-TTTGTTTTTTTTTG
1 TTTTTTTCTCTTTTTTTTTTGTTTT-TTTGTTT-TTTTTTTTTG
*
736725 TTTTTTTGT-TTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTG
1 TTTTTTTCTCTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTG
736766 AAAAAAATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
41 13 0.33
42 18 0.46
43 8 0.21
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (42 bp):
TTTTTTTCTCTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTG
Found at i:740608 original size:40 final size:40
Alignment explanation
Indices: 740553--740637 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
740543 AGTGTTTGGC
*
740553 TCATCGATGGCATTGACAGAAAGATCCCTAAATGCCTTGT
1 TCATCGATGGCATTGACAGAAAGATCCCCAAATGCCTTGT
*
740593 TCATCGATGGCATTGATAGAAAGATCCCCAAATGCCTTGT
1 TCATCGATGGCATTGACAGAAAGATCCCCAAATGCCTTGT
740633 TCATC
1 TCATC
740638 ATGTGTGCAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (40 bp):
TCATCGATGGCATTGACAGAAAGATCCCCAAATGCCTTGT
Found at i:747129 original size:4 final size:4
Alignment explanation
Indices: 747120--747156 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
747110 AAAACAAAAC
747120 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
747157 CCTCAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:749346 original size:79 final size:79
Alignment explanation
Indices: 749221--749686 Score: 528
Period size: 79 Copynumber: 5.9 Consensus size: 79
749211 TTTTGGAGAT
* * * * * * *
749221 AATAACGGGGTTGGAGTATCCCCTATTGTGAAAAATCGATGA-TTTAGAAATAAAATCGAGATTT
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAT-ATTTTAGAAATAAAACCGGGGTTG
*
749285 GAATATCCCCTCGAA
65 GAGTATCCCCTCGAA
* * * * * * * *
749300 AATAATGGGGTTAGAGTATCCCCGACTATGAAAAAATGATGTTTTAGAAACAAAACTGGGGTTAG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGG
*
749365 AGTATCCCCTCGGA
66 AGTATCCCCTCGAA
* * *
749379 AATAACGGGGTTGGAGTATCCTCGATTATGAGAAATTGATATTTTAGAAATAAGACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGG
*
749444 AGTGTCCCCTCGAA
66 AGTATCCCCTCGAA
* * * * ** *
749458 AATAACGGGGTTGGAGTATCCCCAATTATGAGAAATTAATATTTTACAAATAAGGCCAGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGG
*
749523 GGTATCCCCTCGAA
66 AGTATCCCCTCGAA
749537 AATAACGGGGTTGGAGTATCCCCG---ATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGG
* *
749599 AGTGTCCCCTCAAA
66 AGTATCCCCTCGAA
* * * * * * * *
749613 AATAACGGGGTTGGAGTATCCCCGACTGT-AAAAAGTCAGTGTTTTGGAAATAAAATCGGAGTTG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGA-TATTTTAGAAATAAAACCGGGGTTG
749677 GAGTATCCCC
65 GAGTATCCCC
749687 GATTATGGGA
Statistics
Matches: 327, Mismatches: 55, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
76 67 0.20
78 7 0.02
79 253 0.77
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (79 bp):
AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGG
AGTATCCCCTCGAA
Found at i:749677 original size:51 final size:50
Alignment explanation
Indices: 749622--749790 Score: 164
Period size: 51 Copynumber: 3.3 Consensus size: 50
749612 AAATAACGGG
* *
749622 GTTGGAGTATCCCCGACTGTAAAAAGTCAGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAAAAA-TGAGTGTTTTGGAAATAAAATCGGA
* ** * *
749673 GTTGGAGTATCCCCGATTATGGGAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGT-AAAAATGAGTGTTTTGGAAATAAAATCGGA
* * * *
749724 GTTAGAGTATCCTCGATTAAG-AAAAATTGA-TGTTTTGGAAATGAAACCGG-
1 GTTGGAGTATCCCCGATT--GTAAAAA-TGAGTGTTTTGGAAATAAAATCGGA
749774 GATTGGAGTATCCCCGA
1 G-TTGGAGTATCCCCGA
749791 GATGAAAAAT
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
50 1 0.01
51 89 0.94
52 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTAAAAATGAGTGTTTTGGAAATAAAATCGGA
Found at i:751319 original size:441 final size:441
Alignment explanation
Indices: 750491--751375 Score: 1761
Period size: 441 Copynumber: 2.0 Consensus size: 441
750481 CCAAACCAAA
*
750491 ACAAATGAGGTGCTCAACGTTTTTGGTTTCTCCACTAGATCGAACCCATGCTACGGACATTCGAA
1 ACAAAGGAGGTGCTCAACGTTTTTGGTTTCTCCACTAGATCGAACCCATGCTACGGACATTCGAA
750556 CGTCCATAATCGAGAAAGGGAGGTAACATGGGCATCACGTGTTCATTCCATGATCCCGGAGTAGT
66 CGTCCATAATCGAGAAAGGGAGGTAACATGGGCATCACGTGTTCATTCCATGATCCCGGAGTAGT
750621 TTAGGATGATGGAACAACCCGTTGACCATGTCACCAACAAGGATTTTGGACTCTAGGCCAAGGCT
131 TTAGGATGATGGAACAACCCGTTGACCATGTCACCAACAAGGATTTTGGACTCTAGGCCAAGGCT
750686 AACCTACATCTATTGGACAAAGGAGACTCTTTGTTGAAAAACATCATTTTAGAGATTATCTCAGC
196 AACCTACATCTATTGGACAAAGGAGACTCTTTGTTGAAAAACATCATTTTAGAGATTATCTCAGC
750751 ATGAATCCAGATCTAAAATTTTGCTATTTCCCCAAGGTTGGAAAACCAACTCATAAAAGCCTTAA
261 ATGAATCCAGATCTAAAATTTTGCTATTTCCCCAAGGTTGGAAAACCAACTCATAAAAGCCTTAA
750816 GTTCATGTTATTCTCCATGTATGGGAGGTAGCATGAGCTTGGCTTGGGGATGTCCTTAAAATCTG
326 GTTCATGTTATTCTCCATGTATGGGAGGTAGCATGAGCTTGGCTTGGGGATGTCCTTAAAATCTG
750881 ATTTTGGCACACAAATGAGCATCTTGGCATAAATAACATGCAGCAAACACG
391 ATTTTGGCACACAAATGAGCATCTTGGCATAAATAACATGCAGCAAACACG
750932 ACAAAGGAGGTGCTCAACGTTTTTGGTTTCTCCACTAGATCGAACCCATGCTACGGACATTCGAA
1 ACAAAGGAGGTGCTCAACGTTTTTGGTTTCTCCACTAGATCGAACCCATGCTACGGACATTCGAA
750997 CGTCCATAATCGAGAAAGGGAGGTAACATGGGCATCACGTGTTCATTCCATGATCCCGGAGTAGT
66 CGTCCATAATCGAGAAAGGGAGGTAACATGGGCATCACGTGTTCATTCCATGATCCCGGAGTAGT
751062 TTAGGATGATGGAACAACCCGTTGACCATGTCACCAACAAGGATTTTGGACTCTAGGCCAAGGCT
131 TTAGGATGATGGAACAACCCGTTGACCATGTCACCAACAAGGATTTTGGACTCTAGGCCAAGGCT
751127 AACCTACATCTATTGGACAAAGGAGACTCTTTGTTGAAAAACATCATTTTAGAGATTATCTCAGC
196 AACCTACATCTATTGGACAAAGGAGACTCTTTGTTGAAAAACATCATTTTAGAGATTATCTCAGC
751192 ATGAATCCAGATCTAAAATTTTGCTATTTCCCCAAGGTTGGAAAACCAACTCATAAAAGCCTTAA
261 ATGAATCCAGATCTAAAATTTTGCTATTTCCCCAAGGTTGGAAAACCAACTCATAAAAGCCTTAA
751257 GTTCATGTTATTCTCCATGTATGGGAGGTAGCATGAGCTTGGCTTGGGGATGTCCTTAAAATCTG
326 GTTCATGTTATTCTCCATGTATGGGAGGTAGCATGAGCTTGGCTTGGGGATGTCCTTAAAATCTG
751322 ATTTTGGCACACAAATGAGCATCTTGGCATAAATAACATGCAGCAAACACG
391 ATTTTGGCACACAAATGAGCATCTTGGCATAAATAACATGCAGCAAACACG
751373 ACA
1 ACA
751376 TATGTCATGG
Statistics
Matches: 443, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
441 443 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (441 bp):
ACAAAGGAGGTGCTCAACGTTTTTGGTTTCTCCACTAGATCGAACCCATGCTACGGACATTCGAA
CGTCCATAATCGAGAAAGGGAGGTAACATGGGCATCACGTGTTCATTCCATGATCCCGGAGTAGT
TTAGGATGATGGAACAACCCGTTGACCATGTCACCAACAAGGATTTTGGACTCTAGGCCAAGGCT
AACCTACATCTATTGGACAAAGGAGACTCTTTGTTGAAAAACATCATTTTAGAGATTATCTCAGC
ATGAATCCAGATCTAAAATTTTGCTATTTCCCCAAGGTTGGAAAACCAACTCATAAAAGCCTTAA
GTTCATGTTATTCTCCATGTATGGGAGGTAGCATGAGCTTGGCTTGGGGATGTCCTTAAAATCTG
ATTTTGGCACACAAATGAGCATCTTGGCATAAATAACATGCAGCAAACACG
Found at i:752553 original size:20 final size:20
Alignment explanation
Indices: 752528--752565 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
752518 TGTATCGATA
752528 CAATGTATTGATACAATGAG
1 CAATGTATTGATACAATGAG
752548 CAATGTATTGATACAATG
1 CAATGTATTGATACAATG
752566 CAAAATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
CAATGTATTGATACAATGAG
Found at i:752564 original size:13 final size:13
Alignment explanation
Indices: 752516--752545 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
752506 AAAATGCCTG
752516 AATGTATCGATAC
1 AATGTATCGATAC
*
752529 AATGTATTGATAC
1 AATGTATCGATAC
752542 AATG
1 AATG
752546 AGCAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:752572 original size:20 final size:20
Alignment explanation
Indices: 752529--752575 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
752519 GTATCGATAC
*
752529 AATGTATTGATACAATGAGC
1 AATGTATTGATACAATGAGA
752549 AATGTATTGATACAATGCA-A
1 AATGTATTGATACAATG-AGA
752569 AATGTAT
1 AATGTAT
752576 CGAAACATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (20 bp):
AATGTATTGATACAATGAGA
Found at i:754222 original size:31 final size:29
Alignment explanation
Indices: 754140--754222 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 29
754130 GTCGTTCCCC
* *
754140 TTTTATTCATTCTTTCTTTTTTTTCTCTTG
1 TTTT-TTCATTTTTTCTTTTGTTTCTCTTG
*
754170 TTTTTTTATTTTTTCATTTTTGTTTCTCTT-
1 TTTTTTCATTTTTTC--TTTTGTTTCTCTTG
754200 TTGTTTCTCATTTTTTGCTTTTG
1 TT-TTT-TCATTTTTT-CTTTTG
754223 CCCCCTCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
29 9 0.20
30 6 0.14
31 20 0.45
32 8 0.18
33 1 0.02
ACGTcount: A:0.06, C:0.13, G:0.06, T:0.75
Consensus pattern (29 bp):
TTTTTTCATTTTTTCTTTTGTTTCTCTTG
Found at i:758885 original size:23 final size:22
Alignment explanation
Indices: 758842--758885 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
758832 TAAAACAAAG
**
758842 AAAATAACAAACAAATTTACAC
1 AAAATAACAAACAAAAATACAC
*
758864 AAAATAAACACACAAAAATACA
1 AAAAT-AACAAACAAAAATACA
758886 TAAGAAGAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.68, C:0.18, G:0.00, T:0.14
Consensus pattern (22 bp):
AAAATAACAAACAAAAATACAC
Found at i:759227 original size:79 final size:78
Alignment explanation
Indices: 759127--759439 Score: 240
Period size: 79 Copynumber: 4.0 Consensus size: 78
759117 AGATAATCGG
* *
759127 GGTTGGAGTATCCCCGCAAAAATAACAGGGTTGGAGTATCCCCAATTGTGAAAAATCAGTGTTTT
1 GGTTGGAGTATTCCCTCAAAAATAACAGGGTTGGAGTATCCCC-ATTGTGAAAAATCAGTGTTTT
759192 GGAAATAAAACCAA
65 GGAAATAAAACCAA
** *** * * * *
759206 GGTTGTTGTATTCCCTCAAAAATAACAGGGTCAAAGTATCCTCGATTGTAGAAAATTGA-TATTT
1 GGTTGGAGTATTCCCTCAAAAATAACAGGGTTGGAGTATCC-CCATTGT-GAAAAATCAGTGTTT
* **
759270 TGGAAATAAAATCGG
64 TGGAAATAAAACCAA
*** **
759285 GGTTGGAGTA-TCTCCTTGGAAATAATGGGGTTGGAGTATCCCGCATTGTGAAAAATCAGTGTTT
1 GGTTGGAGTATTC-CCTCAAAAATAACAGGGTTGGAGTATCCC-CATTGTGAAAAATCAGTGTTT
* ***
759349 TGAAAATAAAACTGG
64 TGGAAATAAAACCAA
* * * * * * *
759364 GGTTGGAGTA-TCGCCTCGAAAAT-TCAAGGTTCGACTATCCTCGATTGTGAAAAATC-GATATT
1 GGTTGGAGTATTC-CCTCAAAAATAACAGGGTTGGAGTATCC-CCATTGTGAAAAATCAG-TGTT
*
759426 TTAGAAATAAAACC
63 TTGGAAATAAAACC
759440 GAAGTTACAA
Statistics
Matches: 182, Mismatches: 45, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
77 1 0.01
78 48 0.26
79 125 0.69
80 8 0.04
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (78 bp):
GGTTGGAGTATTCCCTCAAAAATAACAGGGTTGGAGTATCCCCATTGTGAAAAATCAGTGTTTTG
GAAATAAAACCAA
Found at i:759386 original size:158 final size:157
Alignment explanation
Indices: 759105--759437 Score: 390
Period size: 158 Copynumber: 2.1 Consensus size: 157
759095 AATGAAAAGT
*
759105 TTGATATTTTGGAGAT--AATCGGGGTTGGAGTATCCCCGCAAAAATAACAGGGTTGGAGTATCC
1 TTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCGCAAAAATAACAGGGTTGGAGTATCC
* **
759168 CCAATTGTGAAAAATCAGTGTTTTGGAAATAAAACCAAGGTTGTTGTATTCCCTCAAAAATA-AC
66 CCAATTGTGAAAAATCAGTGTTTTGAAAATAAAACCAAGGTTGGAGTATTCCCTCAAAAATACA-
*
759232 AGGGTCAAAGTATCCTCGATTGT-AGAAAA
130 AGGGTC-AACTATCCTCGATTGTGA-AAAA
* **** **
759261 TTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCTCCTTGGAAATAATGGGGTTGGAGTATCC
1 TTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCGCAAAAATAACAGGGTTGGAGTATCC
*** * *
759326 CGC-ATTGTGAAAAATCAGTGTTTTGAAAATAAAACTGGGGTTGGAGTA-TCGCCTCGAAAATTC
66 C-CAATTGTGAAAAATCAGTGTTTTGAAAATAAAACCAAGGTTGGAGTATTC-CCTCAAAAATAC
* *
759389 AAGGTTCGACTATCCTCGATTGTGAAAAA
129 AAGGGTCAACTATCCTCGATTGTGAAAAA
* *
759418 TCGATATTTTAGAAATAAAA
1 TTGATATTTTGGAAATAAAA
759438 CCGAAGTTAC
Statistics
Matches: 150, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
156 15 0.10
157 38 0.25
158 95 0.63
159 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (157 bp):
TTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCGCAAAAATAACAGGGTTGGAGTATCC
CCAATTGTGAAAAATCAGTGTTTTGAAAATAAAACCAAGGTTGGAGTATTCCCTCAAAAATACAA
GGGTCAACTATCCTCGATTGTGAAAAA
Found at i:759484 original size:51 final size:51
Alignment explanation
Indices: 759409--759507 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
759399 TATCCTCGAT
*
759409 TGTGAAAAATCGATATTTTAGAAATAAAACCGAAGTTACAATATCCCTGAC
1 TGTGAAAAATCGATATTTTAGAAATAAAACCAAAGTTACAATATCCCTGAC
* * * * * *
759460 TGTGTAAAATCGATGTTTTGGAAATAAAATCAAAGTTAGACTATCCCT
1 TGTGAAAAATCGATATTTTAGAAATAAAACCAAAGTTACAATATCCCT
759508 TTCAAAATAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.30
Consensus pattern (51 bp):
TGTGAAAAATCGATATTTTAGAAATAAAACCAAAGTTACAATATCCCTGAC
Found at i:762051 original size:50 final size:51
Alignment explanation
Indices: 761936--762071 Score: 168
Period size: 50 Copynumber: 2.7 Consensus size: 51
761926 CAAAATGCCT
* * *
761936 GAATGTATCGATACATTGAGAA-ATGTATAGATACATCTGGGTTAAAACCCA
1 GAATGTATCGATACAAT-AAAAGATGTATCGATACATCTGGGTTAAAACCCA
* * *
761987 GAATGTATCAATACAATAAAAGATGTATCGATACGTCTGTG-TAAAACCCA
1 GAATGTATCGATACAATAAAAGATGTATCGATACATCTGGGTTAAAACCCA
* * *
762037 GAATGTATTGATACAATGAAGGATGTATCGATACA
1 GAATGTATCGATACAATAAAAGATGTATCGATACA
762072 AATTGTGGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
50 42 0.58
51 31 0.42
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (51 bp):
GAATGTATCGATACAATAAAAGATGTATCGATACATCTGGGTTAAAACCCA
Found at i:765132 original size:97 final size:97
Alignment explanation
Indices: 764961--765301 Score: 369
Period size: 97 Copynumber: 3.5 Consensus size: 97
764951 TTTTTGGTTC
* * * * * * * * * *
764961 AAAAATAGGGTTAGAGTATCTCCTCGAAAGGATAAGGTTCGAGTGTCCTCGACAATGACAATATA
1 AAAAATGGGGTTAGAGTATCCCCTCGAAAGAATAGGGTTGGAGTATCCCCGATAATGATAATTTA
* *
765026 GGCAAAAATAAGATTTAAATCTTGAAAAGTTT
66 AGCAAAAATAAGACTTAAATCTTGAAAAGTTT
* * * * * * *
765058 AAAAATGGGGTTAGAGTACCCCCTCGGAAGAATGGGGTTGGAGAATCCTCGTTGATGATAATTTA
1 AAAAATGGGGTTAGAGTATCCCCTCGAAAGAATAGGGTTGGAGTATCCCCGATAATGATAATTTA
**
765123 AGCAAAAATAAGACTTAAATCTTGATGAGTTTT
66 AGCAAAAATAAGACTTAAATCTTGAAAAG-TTT
* * * * *
765156 AAAAA-GGAGGTTAGAATATCTCCTTGAAAGAATAGGATTAGAGTATCCCCGATAATGATAATTT
1 AAAAATGG-GGTTAGAGTATCCCCTCGAAAGAATAGGGTTGGAGTATCCCCGATAATGATAATTT
* * *
765220 AAGCAAAAATAAGACTTAAATCATGACAAGTAT
65 AAGCAAAAATAAGACTTAAATCTTGAAAAGTTT
* * *
765253 AAAAGTGGGGTTGGAGTATCCCCTCAAAAGAATAGGGTTGGAGTATCCC
1 AAAAATGGGGTTAGAGTATCCCCTCGAAAGAATAGGGTTGGAGTATCCC
765302 TAATAAATAA
Statistics
Matches: 198, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
97 117 0.59
98 81 0.41
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (97 bp):
AAAAATGGGGTTAGAGTATCCCCTCGAAAGAATAGGGTTGGAGTATCCCCGATAATGATAATTTA
AGCAAAAATAAGACTTAAATCTTGAAAAGTTT
Found at i:767403 original size:13 final size:13
Alignment explanation
Indices: 767363--767414 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
767353 CCGTTACAAG
767363 CAATGTATCGATA
1 CAATGTATCGATA
767376 CAA--T-TC-AT-
1 CAATGTATCGATA
767384 C-ATGTATCGATA
1 CAATGTATCGATA
767396 CAATGTATCGATA
1 CAATGTATCGATA
767409 CAATGT
1 CAATGT
767415 CCTATGTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:767403 original size:33 final size:33
Alignment explanation
Indices: 767363--767431 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
767353 CCGTTACAAG
767363 CAATGTATCGATACAAT-TCATCATGTATCGATA
1 CAATGTATCGATACAATGTCAT-ATGTATCGATA
* *
767396 CAATGTATCGATACAATGTCCTATGTATTGATA
1 CAATGTATCGATACAATGTCATATGTATCGATA
767429 CAA
1 CAA
767432 ATAGTGCTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 30 0.91
34 3 0.09
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (33 bp):
CAATGTATCGATACAATGTCATATGTATCGATA
Found at i:767505 original size:19 final size:19
Alignment explanation
Indices: 767460--767515 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
767450 CTGCTTGTTT
**
767460 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
767480 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
767499 TATGTATCGATACAATG
1 CATGTATCGATACAATG
767516 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:767518 original size:13 final size:13
Alignment explanation
Indices: 767500--767526 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
767490 TACAATGAAT
767500 ATGTATCGATACA
1 ATGTATCGATACA
767513 ATGTATCGATACA
1 ATGTATCGATACA
767526 A
1 A
767527 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:767522 original size:32 final size:33
Alignment explanation
Indices: 767481--767545 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
767471 ACAATTGTCC
*
767481 ATGTATCGATACAATGAAT-ATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
*
767513 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
767546 TCTGGGTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:767994 original size:20 final size:20
Alignment explanation
Indices: 767969--768006 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
767959 CATACTTAAA
767969 ATTGTATCAATACATTTCTC
1 ATTGTATCAATACATTTCTC
767989 ATTGTATCAATACATTTC
1 ATTGTATCAATACATTTC
768007 AATGGCAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (20 bp):
ATTGTATCAATACATTTCTC
Found at i:771993 original size:13 final size:13
Alignment explanation
Indices: 771975--772001 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
771965 CATTTTTCTG
771975 TGTATCGATACAT
1 TGTATCGATACAT
771988 TGTATCGATACAT
1 TGTATCGATACAT
772001 T
1 T
772002 TGGAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:774512 original size:28 final size:27
Alignment explanation
Indices: 774445--774517 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
774435 CTTCACAATC
* *
774445 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
774472 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
774500 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
774518 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:774562 original size:51 final size:51
Alignment explanation
Indices: 774500--774670 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
774490 TTATTTCTGA
* * *
774500 GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
* * * * *
774551 GGGGATACTCCAACCCCGGTTTTATTTTCACAACACCAATTTCTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTT-TTC-ATAATC
** * *
774604 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAATACCAATTTTTCATAATC
*
774656 GAGGATACTCCAACC
1 GGGGATACTCCAACC
774671 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 36 0.37
52 18 0.19
53 32 0.33
54 11 0.11
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
Found at i:774689 original size:28 final size:28
Alignment explanation
Indices: 774653--774734 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
774643 ATTTTTCACA
*
774653 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
774681 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
*
774709 --CGAGGGAACACTCCAACCTCGTTATT
1 ATCG-GGG-ATACTCCAACCTCGTTATT
774735 ATCTCCAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.07
28 41 0.89
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTATTTC
Found at i:787161 original size:13 final size:12
Alignment explanation
Indices: 787132--787200 Score: 61
Period size: 13 Copynumber: 5.6 Consensus size: 12
787122 CCTTCTCTTC
787132 AAAAAAAACAAA
1 AAAAAAAACAAA
*
787144 GAGCAAAAAA-AAA
1 -A-AAAAAAACAAA
**
787157 AAGCAAAA-AAA
1 AAAAAAAACAAA
787168 AAAAAAAACAAA
1 AAAAAAAACAAA
787180 AAAACAAAACAAA
1 AAAA-AAAACAAA
787193 GAAAAAAA
1 -AAAAAAA
787201 GAGAAAAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 13 0.28
12 8 0.17
13 15 0.33
14 10 0.22
ACGTcount: A:0.86, C:0.09, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAACAAA
Found at i:787166 original size:8 final size:8
Alignment explanation
Indices: 787133--787200 Score: 64
Period size: 8 Copynumber: 7.9 Consensus size: 8
787123 CTTCTCTTCA
787133 AAAAAAAC
1 AAAAAAAC
*
787141 AAAGAGCAAAA
1 AAA-A--AAAC
787152 AAAAAAAGC
1 AAAAAAA-C
*
787161 AAAAAAAA
1 AAAAAAAC
787169 AAAAAAAC
1 AAAAAAAC
787177 AAAAAAAC
1 AAAAAAAC
*
787185 AAAACAAAG
1 AAAA-AAAC
787194 AAAAAAA
1 AAAAAAA
787201 GAGAAAAGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
8 28 0.56
9 15 0.30
10 1 0.02
11 6 0.12
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:787179 original size:29 final size:29
Alignment explanation
Indices: 787131--787200 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
787121 ACCTTCTCTT
* * *
787131 CAAAAAAAACAAAGAGCAAAAAAA-AAAA
1 CAAAAAAAAAAAAAAACAAAAAAACAAAA
787159 GCAAAAAAAAAAAAAAACAAAAAAACAAAA
1 -CAAAAAAAAAAAAAAACAAAAAAACAAAA
*
787189 CAAAGAAAAAAA
1 CAAAAAAAAAAA
787201 GAGAAAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 32 0.89
30 4 0.11
ACGTcount: A:0.84, C:0.10, G:0.06, T:0.00
Consensus pattern (29 bp):
CAAAAAAAAAAAAAAACAAAAAAACAAAA
Found at i:787201 original size:8 final size:8
Alignment explanation
Indices: 787148--787213 Score: 64
Period size: 8 Copynumber: 8.2 Consensus size: 8
787138 AACAAAGAGC
787148 AAAA-AAA
1 AAAAGAAA
787155 AAAAGCAAA
1 AAAAG-AAA
*
787164 AAAAAAAA
1 AAAAGAAA
*
787172 AAAACAAA
1 AAAAGAAA
*
787180 AAAACAAA
1 AAAAGAAA
787188 ACAAAGAAA
1 A-AAAGAAA
*
787197 AAAAG-AG
1 AAAAGAAA
787204 AAAAGAAA
1 AAAAGAAA
787212 AA
1 AA
787214 GAACCTGCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
7 10 0.20
8 26 0.52
9 14 0.28
ACGTcount: A:0.86, C:0.06, G:0.08, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:787208 original size:15 final size:13
Alignment explanation
Indices: 787132--787216 Score: 66
Period size: 14 Copynumber: 6.2 Consensus size: 13
787122 CCTTCTCTTC
787132 AAAAAAAACAAAGAG
1 AAAAAAAA-AAA-AG
*
787147 CAAAAAAAAAAAG
1 AAAAAAAAAAAAG
787160 CAAAAAAAAAAAA-
1 -AAAAAAAAAAAAG
787173 AAACAAAAAAACAA-
1 AAA-AAAAAAA-AAG
787187 AACAAAGAAAAAAAG
1 AA-AAA-AAAAAAAG
* *
787202 AGAAAAGAAAAAG
1 AAAAAAAAAAAAG
787215 AA
1 AA
787217 CCTGCTTAAG
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
12 3 0.05
13 17 0.29
14 25 0.42
15 14 0.24
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:787213 original size:1 final size:1
Alignment explanation
Indices: 787148--787200 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
787138 AACAAAGAGC
** * * * *
787148 AAAAAAAAAAAGCAAAAAAAAAAAAAAACAAAAAAACAAAACAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
787201 GAGAAAAGAA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.08, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:788265 original size:55 final size:55
Alignment explanation
Indices: 788175--788803 Score: 895
Period size: 55 Copynumber: 11.4 Consensus size: 55
788165 TCTCCTTCCG
*
788175 CTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
788230 CCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
788285 -TTTTCCAGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCA
788340 -TTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
788395 CCTTTCAGTCCCCAAAGAGCAGGACACCT-TTCAAAGCCCAC-CTAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACAC-AAGTTGGTGGCA
788450 -TTTTCTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
788505 CCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
788560 -TTTTCTAGTCCTCAAAGAAG-AGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAG-AGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCA
788615 -TTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
788670 CCTTTCATTCCCCAAAGAGCAGGACA-CTTTTCAAAGCCCACACAAGTGGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCA
* * **
788725 CCTTTCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACATGAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCA
* * *
788780 CTTTTTACTCCTCAATGAGCAGGA
1 CTTTTCAGTCCTCAAAGAGCAGGA
788804 TACAATTTAT
Statistics
Matches: 527, Mismatches: 28, Indels: 38
0.89 0.05 0.06
Matches are distributed among these distances:
54 24 0.05
55 481 0.91
56 22 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (55 bp):
CTTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
Found at i:788731 original size:29 final size:29
Alignment explanation
Indices: 788584--788731 Score: 71
Period size: 29 Copynumber: 5.3 Consensus size: 29
788574 AAGAAGAGGA
*
788584 CACCTTTCAAAGCCCACACAAGTTGGTGG
1 CACCTTTCAAAGCCCACACAAGTGGGTGG
* * * * * * *
788613 CA-TTTTC-CAGTCCTCA-AAGAGCAG-GA
1 CACCTTTCAAAGCCCACACAAGTG-GGTGG
*
788639 CACCTCTT-AAAGCCCACACAAGTTGGTGG
1 CACCT-TTCAAAGCCCACACAAGTGGGTGG
** * * *
788668 CACCTTTC-ATTCCC-CA-AAGAGCAG-GA
1 CACCTTTCAAAGCCCACACAAGTG-GGTGG
*
788694 CACTTTTCAAAGCCCACACAAGTGGGTGG
1 CACCTTTCAAAGCCCACACAAGTGGGTGG
788723 CACCTTTCA
1 CACCTTTCA
788732 GTCCTCAAAG
Statistics
Matches: 78, Mismatches: 29, Indels: 24
0.60 0.22 0.18
Matches are distributed among these distances:
26 17 0.22
27 15 0.19
28 22 0.28
29 24 0.31
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (29 bp):
CACCTTTCAAAGCCCACACAAGTGGGTGG
Found at i:789347 original size:15 final size:15
Alignment explanation
Indices: 789327--789356 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
789317 GATAAAGTGT
789327 TTGAAAAAAAAAAAA
1 TTGAAAAAAAAAAAA
789342 TTGAAAAAAAAAAAA
1 TTGAAAAAAAAAAAA
789357 AATTGTGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (15 bp):
TTGAAAAAAAAAAAA
Found at i:789459 original size:19 final size:19
Alignment explanation
Indices: 789435--789502 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
789425 AATTCAACAA
789435 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
789454 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
789469 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
789486 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
789503 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:789474 original size:13 final size:13
Alignment explanation
Indices: 789456--789480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
789446 ACATAAGTTT
789456 TGTATCGATACAA
1 TGTATCGATACAA
789469 TGTATCGATACA
1 TGTATCGATACA
789481 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:789478 original size:32 final size:32
Alignment explanation
Indices: 789437--789499 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
789427 TTCAACAATT
*
789437 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
789469 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
789500 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:790357 original size:28 final size:27
Alignment explanation
Indices: 790290--790362 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
790280 CTTCACAATC
* *
790290 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
790317 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
790345 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
790363 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:790407 original size:51 final size:51
Alignment explanation
Indices: 790345--790515 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
790335 TTATTTCTGA
* * *
790345 GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
* * * * *
790396 GGGGATACTCCAACCCCGGTTTTATTTTCACAACACCAATTTCTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTT-TTC-ATAATC
** * *
790449 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAATACCAATTTTTCATAATC
*
790501 GAGGATACTCCAACC
1 GGGGATACTCCAACC
790516 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 36 0.37
52 18 0.19
53 32 0.33
54 11 0.11
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
Found at i:790534 original size:28 final size:28
Alignment explanation
Indices: 790498--790579 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
790488 ATTTTTCACA
*
790498 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
790526 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
*
790554 --CGAGGGAACACTCCAACCTCGTTATT
1 ATCG-GGG-ATACTCCAACCTCGTTATT
790580 ATCTCCAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.07
28 41 0.89
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTATTTC
Found at i:791576 original size:13 final size:13
Alignment explanation
Indices: 791558--791582 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
791548 TAATCCTTCA
791558 TGTATCGATACAT
1 TGTATCGATACAT
791571 TGTATCGATACA
1 TGTATCGATACA
791583 ATATGAGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:792191 original size:20 final size:20
Alignment explanation
Indices: 792168--792240 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
792158 ACAATTCAAA
792168 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
792188 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
792209 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
792229 GTATCGATACAT
1 GTATCGATACAT
792241 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:792212 original size:21 final size:21
Alignment explanation
Indices: 792186--792261 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
792176 ACATGTTGCA
792186 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
792207 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
792227 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
792248 ATGTATCGATACAT
1 ATGTATCGATACAT
792262 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:792219 original size:41 final size:41
Alignment explanation
Indices: 792168--792261 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
792158 ACAATTCAAA
*
792168 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
792209 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
792250 GTATCGATACAT
1 GTATCGATACAT
792262 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:795949 original size:13 final size:13
Alignment explanation
Indices: 795931--795955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
795921 TTTTCCAGAT
795931 TGTATCGATACAA
1 TGTATCGATACAA
795944 TGTATCGATACA
1 TGTATCGATACA
795956 TTGCTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:797919 original size:20 final size:20
Alignment explanation
Indices: 797896--797968 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
797886 ACAATTCAAA
797896 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
797916 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
797937 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
797957 GTATCGATACAT
1 GTATCGATACAT
797969 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:797940 original size:21 final size:21
Alignment explanation
Indices: 797914--797989 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
797904 ACATGTTGCA
797914 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
797935 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
797955 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
797976 ATGTATCGATACAT
1 ATGTATCGATACAT
797990 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:797947 original size:41 final size:41
Alignment explanation
Indices: 797896--797989 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
797886 ACAATTCAAA
*
797896 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
797937 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
797978 GTATCGATACAT
1 GTATCGATACAT
797990 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:799247 original size:21 final size:21
Alignment explanation
Indices: 799223--799264 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
799213 CAATATATAA
*
799223 CTCCCTCTTAATAAAATTTTT
1 CTCCCCCTTAATAAAATTTTT
799244 CTCCCCCTTAATAAAATTTTT
1 CTCCCCCTTAATAAAATTTTT
799265 AATGCTCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (21 bp):
CTCCCCCTTAATAAAATTTTT
Found at i:801257 original size:20 final size:19
Alignment explanation
Indices: 801196--801259 Score: 59
Period size: 20 Copynumber: 3.6 Consensus size: 19
801186 TAGTACCCTT
801196 GTATCGATACAAAGAACGTA
1 GTATCGATAC-AAGAACGTA
801216 GTATCGATAC---AA--T-
1 GTATCGATACAAGAACGTA
*
801229 GTCTCGATACTAAGAACGTA
1 GTATCGATAC-AAGAACGTA
801249 GTATCGATACA
1 GTATCGATACA
801260 TCTGAGTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
13 9 0.26
14 1 0.03
16 2 0.06
17 2 0.06
19 2 0.06
20 19 0.54
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (19 bp):
GTATCGATACAAGAACGTA
Found at i:802996 original size:13 final size:13
Alignment explanation
Indices: 802978--803002 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
802968 CATTATGCTT
802978 TGTATCGATACAA
1 TGTATCGATACAA
802991 TGTATCGATACA
1 TGTATCGATACA
803003 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:809441 original size:20 final size:20
Alignment explanation
Indices: 809403--809442 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
809393 TTTCAAATTT
809403 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
809424 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
809443 TATCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:811096 original size:20 final size:19
Alignment explanation
Indices: 811050--811103 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
811040 ATCAATACAA
* *
811050 TGTATCGATACATGTTCAT
1 TGTATCGATACATGATAAT
*
811069 TGTTTCGATACATGCATAAT
1 TGTATCGATACATG-ATAAT
811089 TGTATCGATACATGA
1 TGTATCGATACATGA
811104 AACTGGTAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATGATAAT
Found at i:818420 original size:20 final size:19
Alignment explanation
Indices: 818393--818461 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 19
818383 GACAGAAGGC
818393 ATCGATACATTGAAGAATGT
1 ATCGATACATTGAA-AATGT
* * *
818413 ATCTATACATTCATACATGT
1 ATCGATACATTGA-AAATGT
818433 ATCGATACATTGAAAAATGT
1 ATCGATACATTG-AAAATGT
818453 ATCGATACA
1 ATCGATACA
818462 ACTTGGTACT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 39 0.95
21 2 0.05
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (19 bp):
ATCGATACATTGAAAATGT
Found at i:819496 original size:28 final size:28
Alignment explanation
Indices: 819323--820185 Score: 468
Period size: 28 Copynumber: 29.4 Consensus size: 28
819313 TTTTTTTAAA
*
819323 AAAGG-TGCCACTAACTTGTGTGGACTTTG
1 AAAGGTTGCCACTGACTTGTG-GG-CTTTG
* *
819352 AAAAGAGTTGCCACCGATTCGTGTGGGCTTTG
1 -AAAG-GTTGCCACTGA--CTTGTGGGCTTTG
* * *
819384 AAAAGAGTTACCAGT-AGCTTGTGAGCTTTG
1 -AAAG-GTTGCCACTGA-CTTGTGGGCTTTG
*
819414 AAAAAAG-TGCCACTGACTTGTGGGCTTTG
1 --AAAGGTTGCCACTGACTTGTGGGCTTTG
*
819443 AAAGGGTGCCACT-ACTTGTGGGCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* *
819470 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
819498 AAAAGAG-TGCCACTGACTTGTGGGCTTTG
1 -AAAG-GTTGCCACTGACTTGTGGGCTTTG
*
819527 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * *
819555 AAAGGGTGCCATTGACTTGTAGTCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* *
819583 AAAGGATGCTACTGACTTGTGGGCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
*
819611 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGTTGCCACTGAC-T-TGTGGGCTTTG
** *
819643 AAATGTGTTGCCACCAACTTGTGTGGGCTTTC
1 AAA-G-GTTGCCACTGAC-T-TGTGGGCTTTG
*
819675 AAATGAGTTGCCACCGACTTATGTGGGCTTTG
1 AAA-G-GTTGCCACTGAC-T-TGTGGGCTTTG
* * * *
819707 AAATGATGCCACCGACTTGTGGGCATTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
*
819735 AAATGGGTTGCCACCGACTTGTGTAGGCTTTG
1 AAA--GGTTGCCACTGACTTGTG--GGCTTTG
* **
819767 AAATAGCTTGCCACCAACTTCTGTGGGCTTTG
1 -AA-AGGTTGCCACTGAC-T-TGTGGGCTTTG
** *
819799 AAATGGGTTGCCACCAACTTGTGTGGGCTTTCA
1 AAA--GGTTGCCACTGAC-T-TGTGGGCTTT-G
* * *
819832 AATAAGTTGCCACCGACTTGTGTGGGTTTTG
1 AA-AGGTTGCCACTGAC-T-TGTGGGCTTTG
* ** *
819863 AAATGGGTTGCTACCAACTTGTGTGGGCTTTC
1 AAA--GGTTGCCACTGAC-T-TGTGGGCTTTG
*
819895 AAATGAGTTGCCACCGACTTATGTGGGCTTTG
1 AAA-G-GTTGCCACTGAC-T-TGTGGGCTTTG
* *
819927 AAATGATGCCACTGACTTGTGGGCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * *
819955 AAATGATGCCAATGACTTATGGGCTTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * * *
819983 AAAGGATGCCACTAACTTATGGCCTAT-
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * * *
820010 AAATGATGCCACTAACTTGTGGG-ATTA
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * * * *
820037 AAAGGATGCCACGGAGTGGTGGACTTTA
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * *
820065 AAAGGGTGCCACGGAGTTGTGGGCTTT-
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * * *
820092 AAAGGGTGCCA-TGGAGTTGTTGAC-TTA
1 AAAGGTTGCCACT-GACTTGTGGGCTTTG
* * * * *
820119 AAAGGATGCCACGGAGTTGTGGACTTTA
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
* * * * *
820147 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGTTGCCACTGACTTGTGGGCTTTG
*
820175 AAAGGATGCCA
1 AAAGGTTGCCA
820186 AGGAGTTATG
Statistics
Matches: 704, Mismatches: 92, Indels: 76
0.81 0.11 0.09
Matches are distributed among these distances:
26 3 0.00
27 108 0.15
28 237 0.34
29 44 0.06
30 67 0.10
31 13 0.02
32 214 0.30
33 7 0.01
34 11 0.02
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
AAAGGTTGCCACTGACTTGTGGGCTTTG
Found at i:819639 original size:32 final size:31
Alignment explanation
Indices: 819336--819959 Score: 489
Period size: 32 Copynumber: 20.6 Consensus size: 31
819326 GGTGCCACTA
* * *
819336 ACTTGTGTGGACTTTGAAAAGAGTTGCCACCG
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
* * *
819368 A-TTCGTGTGGGCTTTGAAAAGAGTTACCA--G
1 ACTT--TGTGGGCTTTGAAATGGGTTGCCACCG
* *** *
819398 TAGC-TTGTGAGCTTTGAAAAAAG-TGCCACTG
1 -A-CTTTGTGGGCTTTGAAATGGGTTGCCACCG
*
819429 AC-TTGTGGGCTTTGAAA-GGG-TGCCA-CT
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
* **
819456 AC-TTGTGGGCTTTGAAA--GGATGCCACTA
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
819484 AC-TTGTGGGCTTTGAAAAGAG-TGCCACTG
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
*
819513 AC-TTGTGGGCTTTGAAA-GGG-TGCCACTG
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
**
819541 AC-TTGTGGGCTTTGAAA-GGG-TGCCATTG
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
* * * * *
819569 AC-TTGTAGTCTTTGAAA--GGATGCTACTG
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
819597 AC-TTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
* *
819627 ACTTGTGTGGGCTTTGAAATGTGTTGCCACCA
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
* *
819659 ACTTGTGTGGGCTTTCAAATGAGTTGCCACCG
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
*
819691 ACTTATGTGGGCTTTGAAAT--GATGCCACCG
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
*
819721 AC-TTGTGGGCATTGAAATGGGTTGCCACCG
1 ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
* * * *
819751 ACTTGTGTAGGCTTTGAAATAGCTTGCCACCA
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
*
819783 ACTTCTGTGGGCTTTGAAATGGGTTGCCACCA
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
* **
819815 ACTTGTGTGGGCTTTCAAATAAGTTGCCACCG
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
* * *
819847 ACTTGTGTGGGTTTTGAAATGGGTTGCTACCA
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
* *
819879 ACTTGTGTGGGCTTTCAAATGAGTTGCCACCG
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
* *
819911 ACTTATGTGGGCTTTGAAAT--GATGCCACTG
1 ACTT-TGTGGGCTTTGAAATGGGTTGCCACCG
819941 AC-TTGTGGGCTTTGAAATG
1 ACTTTGTGGGCTTTGAAATG
819960 ATGCCAATGA
Statistics
Matches: 508, Mismatches: 64, Indels: 43
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.00
27 24 0.05
28 125 0.25
29 45 0.09
30 61 0.12
31 6 0.01
32 245 0.48
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (31 bp):
ACTTTGTGGGCTTTGAAATGGGTTGCCACCG
Found at i:820102 original size:82 final size:82
Alignment explanation
Indices: 820026--821435 Score: 1768
Period size: 82 Copynumber: 17.1 Consensus size: 82
820016 TGCCACTAAC
* *
820026 TTGTGGGA-TTAAAAGGATGCCACGGAGTGGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGGCT
1 TTGT-GGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
* *
820090 TTAAAGGGTGCCATGGAG
65 TTAAAGGATGCCACGGAG
*
820108 TTGTTGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
*
820173 TAAAAGGATGCCAAGGAG
66 T-AAAGGATGCCACGGAG
* * * * * *
820191 TTATGGACTTAAAA-GATGCCATGGAGTGGTGGACTTTAAAAGGATGCCATGGAGTTGTGGAATT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
* *
820255 AAAATGATGCCACGGAG
66 TAAAGGATGCCACGGAG
* * * * * *
820272 TGGTGGACTTTAAAAGGGTGCCATGAAGTTGTGGACTTT-AAAGCGTGCCACGGAGTTATGGACT
1 TTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
*
820336 TAAAAGGATGCCACGGAG
65 TTAAAGGATGCCACGGAG
* * * * *
820354 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGAAGCTATGGAC-
1 TTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
820418 TTAGAAGGATGCCACGGAG
65 TTA-AAGGATGCCACGGAG
* * * *
820437 TGGTGGACTTTATAAAGG-TGCCAAGGAGTTATGGACTTT-AAAGGGTGCCACGGAGTTGTAGAC
1 TTGTGGAC-TTA-AAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* *
820500 TTAAAAGGATGCCATGGAG
64 TTTAAAGGATGCCACGGAG
* *
820519 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTTCCACGGAGTTGTGGACT
1 TTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
820584 TTAAAAGGATGCCACGGAG
65 TT-AAAGGATGCCACGGAG
*
820603 TTGTGGACTTAAAAGGATGCCACGGAGTGGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
* *
820667 TAAA-AAGTGCCACAGAG
66 TAAAGGA-TGCCACGGAG
* * *
820684 TTGTGGACTTAAAAGAATGCCACGGGGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
820749 TAAAAGGATGCCACGGAG
66 T-AAAGGATGCCACGGAG
* * * * *
820767 TTGTGGACTTTAAAGGGTGCCACGGAGTTATGGAC-TTAAAAGGATGCCATGGAGTTGTGGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
820831 TAAAAAGG-TGCCACGGAG
66 T--AAAGGATGCCACGGAG
* * * *
820849 TTGTGGACTTTAAAAGGATGCCACAGAGTTGTGGAC-TTAAAAGGAT-CTACGGAGTGGTGGACT
1 TTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
* **
820912 TTAAAAGGGTGCCATAGAG
65 TT-AAAGGATGCCACGGAG
* * *
820931 TTGTTGACTCTAAAACGG-TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTATGGAT
1 TTGTGGACT-TAAAA-GGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* ** *
820995 TTTAAAGGTTGTGACGAAG
64 TTTAAAGGATGCCACGGAG
* * *
821014 TTGTGGACTTAAAAAGATGCCCCGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTATGGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
* *
821079 TAAAAGGATACCATGGAG
66 T-AAAGGATGCCACGGAG
* * * * *
821097 TTGTGGACTTAAAAAGATGCCATGGAGTGGTGGACTTTGAAAGGGTGCCACGGAGTTGTAGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
* *
821162 TAAAGGGTGCCACAGAG
66 TAAAGGATGCCACGGAG
* *
821179 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGGAGTGGTGGACTT
1 TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
*
821244 AAAAGGATGCCACGGAG
66 TAAAGGATGCCACGGAG
* *
821261 TGGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGGTGCCACGGAGTTGTGGACT
1 TTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
* *
821325 TAAAAGGATGCCGCGGAG
65 TTAAAGGATGCCACGGAG
* * * * *
821343 TTGTGGACTTTTAAAGGGTGCTACGGAGTAGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACT
1 TTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACT
* * *
821408 TAAAAGGATACCATGGAG
65 TTAAAGGATGCCACGGAG
821426 TTGTGGACTT
1 TTGTGGACTT
821436 TGAAAAGAAA
Statistics
Matches: 1167, Mismatches: 135, Indels: 52
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.00
81 79 0.07
82 625 0.54
83 418 0.36
84 44 0.04
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (82 bp):
TTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
TAAAGGATGCCACGGAG
Found at i:820148 original size:110 final size:110
Alignment explanation
Indices: 820034--821435 Score: 1772
Period size: 110 Copynumber: 12.8 Consensus size: 110
820024 ACTTGTGGGA
* * *
820034 TTAAAAGGATGCCACGGAGTGGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAGGGT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
* *
820099 GCCATGGAGTTGTTGACTTAAAAGGATGCCACGGAGTTGTGGACT
66 GCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* * * * *
820144 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCAAGGAGTTATGGAC-TTAAAAGAT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
* * * *
820208 GCCATGGAGTGGTGGACTTTAAAAGGATGCCATGGAGTTGTGGA-A
66 GCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACT
* * * *
820253 TTAAAATGATGCCACGGAGTGGTGGACTTTAAAAGGGTGCCATGAAGTTGTGGACTTTAAAGCG-
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAG-GA
*
820317 TGCCACGGAGTTATGGACTTAAAAGGATGCCACGGAGTTGTGGACT
65 TGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* * * * *
820363 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGAAGCTATGGAC-TTAGAAGGA
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTA-AAGGA
* * *
820427 TGCCACGGAGTGGTGGACTTTATAAAGG-TGCCAAGGAGTTATGGACT
65 TGCCACGGAGTTGTGGAC-TTA-AAAGGATGCCACGGAGTTGTGGACT
* * * * *
820474 TT-AAAGGGTGCCACGGAGTTGTAGAC-TTAAAAGGATGCCATGGAGTTGTGGACTTTAAAAGGG
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA
* *
820537 TGCCACGGAGTTGTGGACTTTAAAAGGGTTCCACGGAGTTGTGGACT
65 TGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACT
* * * *
820584 TTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTGGTGGACTTAAAAGGGT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
* *
820648 GCCACGGAGTTGTGGACTTTAAAAAG-TGCCACAGAGTTGTGGAC-
66 GCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACT
* * *
820692 TTAAAAGAATGCCACGGGGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGA
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA
* * *
820757 TGCCACGGAGTTGTGGACTTTAAAGGGTGCCACGGAGTTATGGAC-
65 TGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* *
820802 TTAAAAGGATGCCATGGAGTTGTGGACTTTAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA
* * *
820867 TGCCACAGAGTTGTGGACTTAAAAGGAT-CTACGGAGTGGTGGACT
65 TGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* ** * * * *
820912 TTAAAAGGGTGCCATAGAGTTGTTGACTCTAAAACGGTGCCACGGAGTTGTGGACTTTAAAAGGG
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA
* * * * ** *
820977 TGCCACGGAGTTATGGATTTTAAAGGTTGTGACGAAGTTGTGGAC-
65 TGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* * *
821022 TTAAAAAGATGCCCCGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTATGGACTTTAAAAGGA
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA
* * * * *
821087 TACCATGGAGTTGTGGACTTAAAAAGATGCCATGGAGTGGTGGACT
65 TGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* * * * *
821133 TTGAAAGGGTGCCACGGAGTTGTAGACTTT-AAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
*
821197 GCCACGGAGTTGTGGACTTTAAAAGGATGCCACGGAGTGGTGGAC-
66 GCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACT
* *
821242 TTAAAAGGATGCCACGGAGTGGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGGT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
*
821307 GCCACGGAGTTGTGGACTTAAAAGGATGCCGCGGAGTTGTGGACT
66 GCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
* * * * * *
821352 TTTAAAGGGTGCTACGGAGTAGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGAT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
* *
821417 ACCATGGAGTTGTGGACTT
66 GCCACGGAGTTGTGGACTT
821436 TGAAAAGAAA
Statistics
Matches: 1128, Mismatches: 143, Indels: 42
0.86 0.11 0.03
Matches are distributed among these distances:
108 25 0.02
109 261 0.23
110 727 0.64
111 110 0.10
112 5 0.00
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (110 bp):
TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGAT
GCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACT
Found at i:820190 original size:28 final size:28
Alignment explanation
Indices: 820034--821466 Score: 1803
Period size: 28 Copynumber: 52.1 Consensus size: 28
820024 ACTTGTGGGA
*
820034 TTAAAAGGATGCCACGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820062 TTAAAAGGGTGCCACGGAGTTGTGGGCT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * *
820090 TT-AAAGGGTGCCATGGAGTTGTTGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
820116 TTAAAAGGATGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820144 TTAAAAGGGTGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820172 TTAAAAGGATGCCAAGGAGTTATGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820199 TTAAAA-GATGCCATGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820226 TTAAAAGGATGCCATGGAGTTGTGGA-A
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820253 TTAAAATGATGCCACGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * *
820281 TTAAAAGGGTGCCATGAAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820309 TT-AAAGCG-TGCCACGGAGTTATGGAC-
1 TTAAAAG-GATGCCACGGAGTTGTGGACT
820335 TTAAAAGGATGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820363 TTAAAAGGGTGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * *
820391 TTAAAAGGATGCCACGAAGCTATGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820418 TTAGAAGGATGCCACGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820446 TTATAAAGG-TGCCAAGGAGTTATGGACT
1 TTA-AAAGGATGCCACGGAGTTGTGGACT
* *
820474 TT-AAAGGGTGCCACGGAGTTGTAGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820500 TTAAAAGGATGCCATGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820528 TTAAAAGGGTGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820556 TTAAAAGGGTTCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
820584 TTAAAAGGATGCCACGGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820611 TTAAAAGGATGCCACGGAGTGGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820638 TTAAAAGGGTGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820666 TTAAAAAG-TGCCACAGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820692 TTAAAAGAATGCCACGGGGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820720 TTAAAAGGGTGCCACAGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
820748 TTAAAAGGATGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820776 TT-AAAGGGTGCCACGGAGTTATGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820802 TTAAAAGGATGCCATGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
820830 TTAAAAAGG-TGCCACGGAGTTGTGGACT
1 TT-AAAAGGATGCCACGGAGTTGTGGACT
*
820858 TTAAAAGGATGCCACAGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
820885 TTAAAAGGAT-CTACGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* ** *
820912 TTAAAAGGGTGCCATAGAGTTGTTGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
820940 CTAAAACGG-TGCCACGGAGTTGTGGACT
1 TTAAAA-GGATGCCACGGAGTTGTGGACT
* *
820968 TTAAAAGGGTGCCACGGAGTTATGGA-T
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * ** *
820995 TTTAAAGGTTGTGACGAAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
821022 TTAAAAAGATGCCCCGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
821050 TTAAAAGGGTGCCACGGAGTTATGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
821078 TTAAAAGGATACCATGGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * *
821105 TTAAAAAGATGCCATGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * *
821133 TTGAAAGGGTGCCACGGAGTTGTAGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
821161 TT-AAAGGGTGCCACAGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
821187 TTAAAAGGATGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
821215 TTAAAAGGATGCCACGGAGTGGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
821242 TTAAAAGGATGCCACGGAGTGGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
821270 TTAAAAGGGTGCCACGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
821298 TT-AAAGGGTGCCACGGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
*
821324 TTAAAAGGATGCCGCGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * * *
821352 TTTAAAGGGTGCTACGGAGTAGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
821380 TTAAAAGGATGCCACGGAGTTGTGGAC-
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* *
821407 TTAAAAGGATACCATGGAGTTGTGGACT
1 TTAAAAGGATGCCACGGAGTTGTGGACT
* * * *
821435 TTGAAAAGAAATGCCACTGAATCGTGGACT
1 TT-AAAAG-GATGCCACGGAGTTGTGGACT
821465 TT
1 TT
821467 GAAGAGTCGC
Statistics
Matches: 1220, Mismatches: 149, Indels: 70
0.85 0.10 0.05
Matches are distributed among these distances:
26 54 0.04
27 536 0.44
28 596 0.49
29 17 0.01
30 17 0.01
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (28 bp):
TTAAAAGGATGCCACGGAGTTGTGGACT
Found at i:833490 original size:51 final size:52
Alignment explanation
Indices: 833387--833502 Score: 153
Period size: 51 Copynumber: 2.2 Consensus size: 52
833377 AATTGCCTGC
* ** * *
833387 ATGTATCGATATATTTGGGTCAAAAACTTAGAATATATCGATACAATTAAAA
1 ATGTATCGATACATTTGGGTCAAAAACCCAAAATATATCGATACAATAAAAA
* *
833439 ATGTATCGATACATTTGGGTC-AAAACCCAAAATGTATCGATATAATAAAAA
1 ATGTATCGATACATTTGGGTCAAAAACCCAAAATATATCGATACAATAAAAA
*
833490 ATGTATTGATACA
1 ATGTATCGATACA
833503 CTTTCTCTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 36 0.64
52 20 0.36
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (52 bp):
ATGTATCGATACATTTGGGTCAAAAACCCAAAATATATCGATACAATAAAAA
Found at i:835923 original size:13 final size:13
Alignment explanation
Indices: 835905--835929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
835895 CAATTATTCA
835905 TGTATCGATACAT
1 TGTATCGATACAT
835918 TGTATCGATACA
1 TGTATCGATACA
835930 ATGTGCCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:836554 original size:33 final size:33
Alignment explanation
Indices: 836512--836576 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
836502 TTGTATCAAC
836512 AGAATTCAAAACCTATAATCTGATATTCACAAT
1 AGAATTCAAAACCTATAATCTGATATTCACAAT
836545 AGAATTCAAAACCTATAATCTGATATTCACAA
1 AGAATTCAAAACCTATAATCTGATATTCACAA
836577 CTTCAAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.29
Consensus pattern (33 bp):
AGAATTCAAAACCTATAATCTGATATTCACAAT
Found at i:843113 original size:15 final size:15
Alignment explanation
Indices: 843095--843129 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
843085 CGAGTCAACT
843095 TCATCATTATCATCA
1 TCATCATTATCATCA
*
843110 TCATCATTATCTTCA
1 TCATCATTATCATCA
843125 TCATC
1 TCATC
843130 TTTGATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (15 bp):
TCATCATTATCATCA
Found at i:843362 original size:20 final size:20
Alignment explanation
Indices: 843337--843390 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
843327 GTTTGGGACA
**
843337 ATGTATCGATACAAT-TATTC
1 ATGTATCGATACAATGT-GCC
843357 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
843377 ATGTATCGATACAA
1 ATGTATCGATACAA
843391 ACAGTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:851425 original size:1 final size:1
Alignment explanation
Indices: 851419--851470 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
851409 CCTTCGTACC
* * * * * *
851419 AAAAAAAAATAAAAAAAAATAAAAAAAACAAAAAAAAACAAACAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
851471 TGGGTCCAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.04
Consensus pattern (1 bp):
A
Found at i:851444 original size:19 final size:19
Alignment explanation
Indices: 851420--851470 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
851410 CTTCGTACCA
*
851420 AAAAAAAATAAAAAAAAAT
1 AAAAAAAACAAAAAAAAAT
851439 AAAAAAAACAAAAAAAAA-
1 AAAAAAAACAAAAAAAAAT
* *
851457 CAAACAAACAAAAA
1 AAAAAAAACAAAAA
851471 TGGGTCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 12 0.41
19 17 0.59
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.04
Consensus pattern (19 bp):
AAAAAAAACAAAAAAAAAT
Found at i:851457 original size:10 final size:10
Alignment explanation
Indices: 851418--851460 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
851408 TCCTTCGTAC
851418 CAAAAAAAAA
1 CAAAAAAAAA
*
851428 TAAAAAAAAA
1 CAAAAAAAAA
*
851438 -TAAAAAAAA
1 CAAAAAAAAA
851447 CAAAAAAAAA
1 CAAAAAAAAA
851457 CAAA
1 CAAA
851461 CAAACAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 8 0.28
10 21 0.72
ACGTcount: A:0.88, C:0.07, G:0.00, T:0.05
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:852768 original size:28 final size:28
Alignment explanation
Indices: 852731--853141 Score: 430
Period size: 28 Copynumber: 14.5 Consensus size: 28
852721 ACGTTCACCT
852731 TTTCAAAGCCCACAAGTCAGTGGCAACC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* * *
852759 TTTAAAAGCCCATAAGTCAG-GGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* * *
852786 TTTCGAAGCCCATAAGTCAGTGGTAACC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* *
852814 TTTGAAAGCCCACAAGTCACTGGC-ACC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* * * *
852841 TTTTCGAAGCCCACAGAAGTCGGTGGCATCA
1 -TTTCAAAGCCCAC--AAGTCAGTGGCAACC
* * *
852872 TTTCAAAGCCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* * * *
852900 TTTCAAAGCCCATAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* **
852928 TTTCAAAGCCCGCAAGTCAGTGGCATTC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* *
852956 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* * *
852984 TTCTCAAAGCCTAGAAGTCGGTGGCAACC
1 TT-TCAAAGCCCACAAGTCAGTGGCAACC
* *
853013 TCTCTCAAAGCCCACAAGTTAGTGGCACCC
1 T-T-TCAAAGCCCACAAGTCAGTGGCAACC
* * *
853043 TTTCAAAGCCCATAAGTTAGTGGTAACC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
* *
853071 TTTCAAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
853099 TTTCAAAGCCCACAAGTCAGTGGCAACC
1 TTTCAAAGCCCACAAGTCAGTGGCAACC
*
853127 CTTCTAAAGCCCACA
1 TTTC-AAAGCCCACA
853142 CAAGTTGCTG
Statistics
Matches: 325, Mismatches: 50, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
27 27 0.08
28 219 0.67
29 33 0.10
30 45 0.14
31 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCAACC
Found at i:853054 original size:143 final size:141
Alignment explanation
Indices: 852731--853146 Score: 514
Period size: 143 Copynumber: 2.9 Consensus size: 141
852721 ACGTTCACCT
* * * *
852731 TTTCAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCATAAGTCAG-GGCATCCTTTCGAAGC
1 TTTCAAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGC
* * * * * *
852795 CCATAAGTCAGTGGTAACCTTTGAAAGCCCACAAGTCACTGGCACCTTTTCGAAGCCCACAGAAG
66 CCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCACCTTCTCAAAG-CCACAGAAG
*
852860 TCGGTGGCATCA
130 TCGGTGGCAACA
* * *
852872 TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCATAAGTTAGTGGCATCTTTTCAAAGC
1 TTTCAAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGC
* ** * *
852937 CCGCAAGTCAGTGGCATTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTCTCAAAGCC-TAGAAG
66 CCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTCTCAAAGCCACAGAAG
*
853001 TCGGTGGCAACC
130 TCGGTGGCAACA
* * *
853013 TCTCTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGTAACCTTTCAAA
1 T-T-TCAAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAA
* *
853078 GCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAACCCTTCT-AAAGCCCACA
64 GCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGC-A-CCTTCTCAAAG-CCACA
*
853142 CAAGT
126 GAAGT
853147 TGCTGGTAAC
Statistics
Matches: 235, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
141 59 0.25
142 53 0.23
143 109 0.46
144 9 0.04
145 5 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (141 bp):
TTTCAAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGC
CCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCACCTTCTCAAAGCCACAGAAGT
CGGTGGCAACA
Found at i:853173 original size:32 final size:33
Alignment explanation
Indices: 853129--853194 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
853119 TGGCAACCCT
853129 TCTAAAGCCCACACAAGTTGCTGGTAA-CCTTC
1 TCTAAAGCCCACACAAGTTGCTGGTAACCCTTC
* *
853161 TCTAAAGGCCACACAAGTTGGTGGTAACCCTTC
1 TCTAAAGCCCACACAAGTTGCTGGTAACCCTTC
853194 T
1 T
853195 AAACCTAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 25 0.81
33 6 0.19
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTTGCTGGTAACCCTTC
Found at i:853190 original size:63 final size:57
Alignment explanation
Indices: 852735--853197 Score: 314
Period size: 56 Copynumber: 8.1 Consensus size: 57
852725 TCACCTTTTC
* * * * * * *
852735 AAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCATAAGTCAG-GGCATCCTTTC-
1 AAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
* * * * * * * * *
852790 GAAGCCCATAAGTCAGTGGTAACCTTTGAAAGCCCACAAGTCACTGG-CA-CCTTTT
1 AAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
* ** * * * * **
852845 CGAAGCCCACAGAAGTCGGTGGCATCATTTCAAAGCCCACAAGTTAGTGGCATCTTTTC-
1 -AAAGCCCAC--AAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
* * * * * * ** *
852904 AAAGCCCATAAGTTAGTGGCATCTTTTCAAAGCCCGCAAGTCAGTGGCATTCTTTC-
1 AAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
* * * ** *
852960 AAAGCCCACAAGTTAGTGGCATCCTTCTCAAAGCCTAGAAGTCGGTGGCAA-CCTCTCT
1 AAAGCCCACAAGTTAGTGGCAACCTT-TCAAAGCCCACAAGTTAGTGGTAACCCT-TCT
* * *
853018 CAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGTAACCTTTC-
1 -AAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
* * *
853075 AAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAACCCTTCT
1 AAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
* *
853132 AAAGCCCACACAAGTT-GCTGGTAACCTTCTCTAAAGGCCACACAAGTTGGTGGTAACCCTTCT
1 AAAG-CC-CACAAGTTAG-TGGCAACCTT-TC-AAA-GCC-CACAAGTTAGTGGTAACCCTTCT
853195 AAA
1 AAA
853198 CCTAATGTCA
Statistics
Matches: 332, Mismatches: 56, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
54 3 0.01
55 38 0.11
56 128 0.39
57 25 0.08
58 62 0.19
59 43 0.13
60 4 0.01
61 3 0.01
62 3 0.01
63 23 0.07
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (57 bp):
AAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGTAACCCTTCT
Found at i:854023 original size:20 final size:19
Alignment explanation
Indices: 853960--854023 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
853950 TTTTACCCAG
853960 ATGTATCGATACATTTTTCA
1 ATGTATCGATACA-TTTTCA
* * * *
853980 ATGCATCAATACATGTATGA
1 ATGTATCGATACAT-TTTCA
854000 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATT-TTCA
854020 ATGT
1 ATGT
854024 TTACCCAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (19 bp):
ATGTATCGATACATTTTCA
Found at i:865533 original size:13 final size:13
Alignment explanation
Indices: 865515--865540 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
865505 ACAAAGATCC
865515 ATGTATTGATACA
1 ATGTATTGATACA
865528 ATGTATTGATACA
1 ATGTATTGATACA
865541 TTGAGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:865603 original size:13 final size:13
Alignment explanation
Indices: 865587--865612 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
865577 CAGGGTAACT
865587 TTGTATCGATACA
1 TTGTATCGATACA
865600 TTGTATCGATACA
1 TTGTATCGATACA
865613 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:866160 original size:49 final size:49
Alignment explanation
Indices: 866096--867081 Score: 450
Period size: 49 Copynumber: 20.9 Consensus size: 49
866086 ATGTTAAAGA
* * * *
866096 TGCCAATATGCTGATTGAAGGCCAACGATATCGGACTTAAAAATGAAAG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * ** *
866145 TGCCCATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGAT-AACGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAA-GG
* * * * * *
866194 TGCCAATATGCTCATTCAAGGCCAGCGATACCAGACTTAAAGATGAAGA
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
866243 TGCCAATGTGCTGATTCAAGGTCGGCAAC-AT-T-GGACTTAAAGATGGTTAAGG
1 TGCCAATGTGCTGATTCAAGG-C--CAACGATATCGGACTTAAAGAT-G--AAGG
* * * * *
866295 TGCCAATGTGCTGATCCAAGGGCAATGACATCGGTCTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
*
866344 TGCCAATATGCTGATTCAAGGTCGGCAAC-AT-T-GGACTTAAAGATGGTTAAGG
1 TGCCAATGTGCTGATTCAAGG-C--CAACGATATCGGACTTAAAGAT-G--AAGG
* ** *
866396 TGCCAATGTGCTGATTCAAGGCCAACGACATTAGTCTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * *
866445 TGCCAATATGCTGATTCAAGGCCAGCAATATTGGGC-T-----T----G
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * * * * *
866484 TGCCAATATCCTGATCCAAGGCTAGCGATATTGGTCTTAAAGACG-AGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * *
866532 TGCCAATATGCTGATTCAAGACCAGCGATATTGGGC-T-----T----G
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * * * *
866571 CGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGGTTAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGAT-G--AAGG
* * * * * *
866623 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAGAGATGGTTAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGAT-G--AAGG
* *
866675 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGCCTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * *
866724 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A--
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * *
866763 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * * *
866811 TTCTAATATGCTAATTCAAGGCCAACGATATTGGAC-TCAAGATGTTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATG---AAGG
* * * * * *
866862 TGCCAATATGCTGATTCAAGGCTAGCAACATTGGACTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * * *
866905 CGCCAATGTGCTGATTCAAGGCCAGCGATATTGGTCTTAAATA-CAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * *
866953 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGGC-T-----T--A--
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * * *
866992 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAAG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
* * * * *
867040 TGGCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAG
867082 GTACCACAGA
Statistics
Matches: 750, Mismatches: 114, Indels: 147
0.74 0.11 0.15
Matches are distributed among these distances:
39 128 0.17
40 4 0.01
41 2 0.00
43 38 0.05
45 1 0.00
46 2 0.00
47 8 0.01
48 139 0.19
49 214 0.29
50 8 0.01
51 42 0.06
52 164 0.22
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (49 bp):
TGCCAATGTGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
Found at i:866478 original size:101 final size:100
Alignment explanation
Indices: 866001--866976 Score: 559
Period size: 101 Copynumber: 10.2 Consensus size: 100
865991 CGAAGAATGA
* * * * * * **
866001 CAATGTGCTGATTCATGGCCAGCGACATTAGAATTGAAGAAGAA--T-CCTAATGTGCTGAGACA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCC-AATGTGCTGATTCA
* * * *
866063 AGGCCAGCGACATTGGGC-TAAGGATGTTAAAGATGC
65 AGGCCAGCAACATTGGACTTAAAGATGTT-AAGGTGC
* * * * * * *
866099 CAATATGCTGATTGAAGGCCAACGATATCGGACTTAAAAATGAAAGTGCCCATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * *
866164 GGCCAGCGACATTAGTCTTAAAGA---TAACGGTGC
66 GGCCAGCAACATTGGACTTAAAGATGTTAA-GGTGC
* * * * * *
866197 CAATATGCTCATTCAAGGCCAGCGATACCAGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
866262 GGTCGGCAACATTGGACTTAAAGATGGTTAAGGTGC
66 GGCCAGCAACATTGGACTTAAAGAT-GTTAAGGTGC
* * * * * *
866298 CAATGTGCTGATCCAAGGGCAATGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
866363 GGTCGGCAACATTGGACTTAAAGATGGTTAAGGTGC
66 GGCCAGCAACATTGGACTTAAAGAT-GTTAAGGTGC
* * *
866399 CAATGTGCTGATTCAAGGCCAACGACATTAGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
866464 GGCCAGCAATATTGG-------G--CTT---GTGC
66 GGCCAGCAACATTGGACTTAAAGATGTTAAGGTGC
* * * * * * ** * * *
866487 CAATATCCTGATCCAAGGCTAGCGATATTGGTCTTAAAGACG-AGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * * *
866551 GACCAGCGATATTGG-------G--CTT---GCGC
66 GGCCAGCAACATTGGACTTAAAGATGTTAAGGTGC
* * ** * *
866574 TAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCTGATT
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGAT-G--AAGGTGCCAATGTGCTGATT
* * * *
866639 CAAGGCTAGCGACATTGGTCTTAGAGATGGTTAAGGTGC
63 CAAGGCCAGCAACATTGGACTTAAAGAT-GTTAAGGTGC
* * *
866678 CAATGTGCTGATTCAAGGCCAACGACATCGGCCTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * *
866743 GGCCAGCGATATTGG-------G--CTT-A--TGC
66 GGCCAGCAACATTGGACTTAAAGATGTTAAGGTGC
* ** * * * * * *
866766 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTTCTAATATGCTAATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * *
866830 GGCCAACGATATTGGAC-TCAAGATGTTAAAGGTGC
66 GGCCAGCAACATTGGACTTAAAGATGTT-AAGGTGC
* * * * ** *
866865 CAATATGCTGATTCAAGGCTAGCAACATTGGACTT----A--AAGGCGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * **
866924 GGCCAGCGATATTGGTCTT-AA-AT-ACAAGGTGC
66 GGCCAGCAACATTGGACTTAAAGATGTTAAGGTGC
* *
866956 CAATATGCTAATTCAAGGCCA
1 CAATGTGCTGATTCAAGGCCA
866977 GCGATATTGG
Statistics
Matches: 728, Mismatches: 111, Indels: 85
0.79 0.12 0.09
Matches are distributed among these distances:
87 109 0.15
88 79 0.11
90 1 0.00
91 63 0.09
93 3 0.00
94 37 0.05
95 4 0.01
97 3 0.00
98 114 0.16
99 34 0.05
100 28 0.04
101 210 0.29
102 3 0.00
103 1 0.00
104 39 0.05
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (100 bp):
CAATGTGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAGCAACATTGGACTTAAAGATGTTAAGGTGC
Found at i:866498 original size:39 final size:39
Alignment explanation
Indices: 866444--866604 Score: 151
Period size: 39 Copynumber: 3.9 Consensus size: 39
866434 AAAGATGAAG
*
866444 GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
866483 GTGCCAATATCCTGATCCAAGGCTAGCGATATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
866522 AAAGACGAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
866570 GCGCTAATGTGCTGATTCAAGGCCAGCGACATTGG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
866605 TCTTAGAGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
39 64 0.65
48 34 0.35
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:866563 original size:87 final size:88
Alignment explanation
Indices: 866395--866844 Score: 490
Period size: 87 Copynumber: 5.0 Consensus size: 88
866385 GATGGTTAAG
* * *
866395 GTGCCAATGTGCTGATTCAAGGCCAACGACATTAGTCTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACGAAGGTGCCAATATGCTGAT
*
866460 TCAAGGCCAGCAATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
* * * * *
866483 GTGCCAATATCCTGATCCAAGGCTAGCGATATTGGTCTTAAAGACG-AGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACGAAGGTGCCAATATGCTGAT
*
866547 TCAAGACCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
* * * * *
866570 GCGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CG--AAGGTGCCAATATGCT
* * *
866635 GATTCAAGGCTAGCGACATTGGTCTTAGAGAT
63 GATTCAAGGCCAGCGATATTGGGC-T-----T
* * * * *
866667 GGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCGGCCTTAAAGATGAAGGTGCCAATA
1 -G-T---G-CC-AATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACGAAGGTGCCAATA
866732 TGCTGATTCAAGGCCAGCGATATTGGGCTT
59 TGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
866762 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAC-AAGGTTCTAATATGCTAAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACGAAGGTGCCAATATGCTGAT
*
866826 TCAAGGCCAACGATATTGG
66 TCAAGGCCAGCGATATTGG
866845 ACTCAAGATG
Statistics
Matches: 299, Mismatches: 46, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
87 109 0.36
88 75 0.25
89 1 0.00
90 1 0.00
91 34 0.11
92 1 0.00
93 1 0.00
95 1 0.00
97 1 0.00
98 1 0.00
100 1 0.00
101 36 0.12
102 1 0.00
103 1 0.00
104 35 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (88 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACGAAGGTGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGGCTT
Found at i:866704 original size:279 final size:276
Alignment explanation
Indices: 866299--866844 Score: 806
Period size: 279 Copynumber: 2.0 Consensus size: 276
866289 TTAAGGTGCC
* *
866299 AATGTGCTGATCCAAGGGCAATGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAAG
1 AATGTGCTGATCCAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAAG
* *
866364 GTCGGCAACATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTA
66 GTCAGCAACATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCA
* *
866429 GTCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCAATATC
131 GCCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTTATGCCAATATC
* * * * *
866494 CTGATCCAAGGCTAGCGATATTGGTCTTAAAGACGAGGTGCCAATATGCTGATTCAAGACCAGCG
196 CTGATCCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTAATTCAAGACCAACG
866559 ATATTGGGCTTGCGCT
261 ATATTGGGCTTGCGCT
* * * * *
866575 AATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCTGATTC
1 AATGTGCTGATCCAAGGCCAACGACATCGGTCTTAAAGAT-G--AAGGTGCCAATATGCTGATTC
* * *
866640 AAGG-CTAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGAC
63 AAGGTC-AGCAACATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGAC
* *
866704 ATCGGCCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTATGCCAA
127 ATCAGCCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTTATGCCAA
* * * * * *
866769 TGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTTCTAATATGCTAATTCAAGGCC
192 TATCCTGATCCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTAATTCAAGACC
866834 AACGATATTGG
257 AACGATATTGG
866845 ACTCAAGATG
Statistics
Matches: 239, Mismatches: 27, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
276 34 0.14
277 1 0.00
278 1 0.00
279 203 0.85
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (276 bp):
AATGTGCTGATCCAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAAG
GTCAGCAACATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCA
GCCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTTATGCCAATATC
CTGATCCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTAATTCAAGACCAACG
ATATTGGGCTTGCGCT
Found at i:866938 original size:142 final size:139
Alignment explanation
Indices: 866096--866991 Score: 575
Period size: 150 Copynumber: 6.3 Consensus size: 139
866086 ATGTTAAAGA
* * * * * * *
866096 TGCCAATATGCTGATTGAAGGCCAACGATATCGGACTTAAAAATGAAAGTGCCCATGTGCTGATT
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * * * **
866161 CAAGGCCAGCGACATTAGTCTTAAAGATAACGGTGCCAATATGCTCATTCAAGGCCAGCGATACC
66 CAAGGCCAGCAACATTGGAC-T-----TAA-GGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
* * * *
866226 AGACTTAAAGATGAAGA
124 GGTCTTAAAGA-CAAGG
* * * ** * * *
866243 TGCCAATGTGCTGATTCAAGGTCGGCAACATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTG
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGAT-G--AAGGTGCCAATATGCTG
* * *** * * * * * *
866308 ATCCAAGGGCAATGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGTCGGCAAC
63 ATTCAAGGCCAGCAACATTGGAC-T-----T-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGAC
* *
866373 ATTGGACTTAAAGATGGTTAAGG
121 ATTGGTCTTAAAGA----CAAGG
* * * * *
866396 TGCCAATGTGCTGATTCAAGGCCAACGACATTAGTCTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * * * *
866461 CAAGGCCAGCAATATTGGGCTT---GTGCCAATATCCTGATCCAAGGCTAGCGATATTGGTCTTA
66 CAAGGCCAGCAACATTGGACTTAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
*
866523 AAGACGAGG
131 AAGACAAGG
* * * * * * *
866532 TGCCAATATGCTGATTCAAGACCAGCGATATTGGGC-T-----T----GCGCTAATGTGCTGATT
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
866587 CAAGGCCAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCTAGCGAC
66 CAAGGCCAGCAACA------TT-G-GA--CTTAAGGTGCCAATGTGCTGATTCAAGGCCAGCGAC
**
866652 ATTGGTCTTAGAGATGGTTAAGG
121 ATTGGTCTTA-A-A--GACAAGG
* * * * *
866675 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGCCTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
866740 CAAGGCCAGCGATATTGGGCTT-A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
66 CAAGGCCAGCAACATTGGACTTAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
866802 AAGACAAGG
131 AAGACAAGG
* * *
866811 TTCTAATATGCTAATTCAAGGCCAACGATATTGGAC-TCAAGATGTTAAAGGTGCCAATATGCTG
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATG---AAGGTGCCAATATGCTG
* * *
866875 ATTCAAGGCTAGCAACATTGGACTTAAAGGCGCCAATGTGCTGATTCAAGGCCAGCGATATTGGT
63 ATTCAAGGCCAGCAACATTGGACTT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGT
*
866940 CTTAAATACAAGG
127 CTTAAAGACAAGG
* *
866953 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTA
866992 TGCCAATGTG
Statistics
Matches: 600, Mismatches: 107, Indels: 88
0.75 0.13 0.11
Matches are distributed among these distances:
126 26 0.04
130 1 0.00
132 2 0.00
133 1 0.00
134 1 0.00
135 8 0.01
136 69 0.12
138 39 0.06
139 37 0.06
140 76 0.13
141 1 0.00
142 78 0.13
143 37 0.06
144 2 0.00
145 1 0.00
146 1 0.00
147 37 0.06
148 1 0.00
149 2 0.00
150 108 0.18
151 2 0.00
152 1 0.00
153 69 0.12
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (139 bp):
TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
CAAGGCCAGCAACATTGGACTTAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
AAGACAAGG
Found at i:866985 original size:229 final size:234
Alignment explanation
Indices: 866572--867076 Score: 709
Period size: 229 Copynumber: 2.2 Consensus size: 234
866562 TTGGGCTTGC
* * * * *
866572 GCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCTGA
1 GCTAATATGCTGATTCAAGGCCAGCGATATTGGACTCAGAGATGGTTAAGGTGCCAATATGCTGA
* * *
866637 TTCAAGGCTAGCGACATTGGTCTTAGAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACG
66 TTCAAGGCTAGCAACATTGGACTT--A-A----TAAGGCGCCAATGTGCTGATTCAAGGCCAACG
* *
866702 ACATCGGCCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTATGCC
124 ACATCGGCCTTAAAGATCAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTATGCC
*
866767 AATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGT-
189 AATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGTG
* * *
866812 TCTAATATGCTAATTCAAGGCCAACGATATTGGACTCA-AGAT-GTTAAAGGTGCCAATATGCTG
1 GCTAATATGCTGATTCAAGGCCAGCGATATTGGACTCAGAGATGGTT-AAGGTGCCAATATGCTG
* * *
866875 ATTCAAGGCTAGCAACATTGGACTT-A-AAGGCGCCAATGTGCTGATTCAAGGCCAGCGATATTG
65 ATTCAAGGCTAGCAACATTGGACTTAATAAGGCGCCAATGTGCTGATTCAAGGCCAACGACATCG
* *
866938 GTCTTAAATA-CAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTATGCCAATGTG
130 GCCTTAAAGATCAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTATGCCAATGTG
867002 CTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGTG
195 CTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGTG
*
867042 GC-AATATGCTGATTCAAGGCCAGCAATATTGGACT
1 GCTAATATGCTGATTCAAGGCCAGCGATATTGGACT
867077 TAAAGGTACC
Statistics
Matches: 240, Mismatches: 23, Indels: 15
0.86 0.08 0.05
Matches are distributed among these distances:
229 120 0.50
230 42 0.17
235 1 0.00
238 3 0.01
239 43 0.18
240 31 0.13
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (234 bp):
GCTAATATGCTGATTCAAGGCCAGCGATATTGGACTCAGAGATGGTTAAGGTGCCAATATGCTGA
TTCAAGGCTAGCAACATTGGACTTAATAAGGCGCCAATGTGCTGATTCAAGGCCAACGACATCGG
CCTTAAAGATCAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTATGCCAATGTGC
TGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGTG
Found at i:867025 original size:87 final size:88
Alignment explanation
Indices: 866858--867078 Score: 318
Period size: 87 Copynumber: 2.5 Consensus size: 88
866848 CAAGATGTTA
* *
866858 AAGGTGCCAATATGCTGATTCAAGGCTAGCAACATTGGACTTAAAGGCGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT--A-GCGCCAATGTGCTGATTCA
* *
866923 AGGCCAGCGATATTGGTCTTAAATAC
63 AGGCCAGCGACATTGGTCTTAAAGAC
* * * *
866949 AAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTA-TGCCAATGTGCTGATTCAAGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGCGCCAATGTGCTGATTCAAGG
867013 CCAGCGACATTGGTCTTAAAGAC
66 CCAGCGACATTGGTCTTAAAGAC
* *
867036 AAAGTGGCAATATGCTGATTCAAGGCCAGCAATATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTA
867079 AAGGTACCAC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 79 0.68
89 1 0.01
91 37 0.32
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (88 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGCGCCAATGTGCTGATTCAAGG
CCAGCGACATTGGTCTTAAAGAC
Found at i:867199 original size:32 final size:32
Alignment explanation
Indices: 867078--867239 Score: 146
Period size: 34 Copynumber: 4.9 Consensus size: 32
867068 TATTGGACTT
* * *
867078 AAAGGTACCACAGAGTTGTGGACTTACAGGAA-A
1 AAAGGTGCCACGGAGTTGTGGACTTA-A-AAAGA
* * * *
867111 AAGGGATGCCATGGAGGTGTGGGCTTAAAAAGGA
1 AAAGG-TGCCACGGAGTTGTGGACTTAAAAA-GA
*
867145 AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGA
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAAGA
* **
867178 AAAGGTGCCACAGAGTTGTGGACTTAAATGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
**
867210 ACAAGGTGCTGCGGAGTTGTGGACTTAAAA
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAA
867240 GGAACAAGAT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
32 28 0.27
33 34 0.33
34 40 0.38
35 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.19
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
Found at i:867227 original size:33 final size:33
Alignment explanation
Indices: 867079--867247 Score: 164
Period size: 33 Copynumber: 5.1 Consensus size: 33
867069 ATTGGACTTA
* * * *
867079 AAGGTACCACAGAGTTGTGGACTT-ACAGGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
* * *
867111 AAGGGATGCCATGGAGGTGTGGGCTTAAAAAGGAA-
1 AA-GG-TGCCACGGAGTTGTGGACTT-AAAAGGAAC
* *
867146 AAGGGTGCCACGGAGTCGTGGACTTAAAAAGAA-
1 AA-GGTGCCACGGAGTTGTGGACTTAAAAGGAAC
* *
867179 AAGGTGCCACAGAGTTGTGGACTTAAATGGAAC
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
**
867212 AAGGTGCTGCGGAGTTGTGGACTTAAAAGGAAC
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
867245 AAG
1 AAG
867248 ATTGTCACAA
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
32 28 0.25
33 43 0.38
34 31 0.27
35 5 0.04
36 6 0.05
ACGTcount: A:0.35, C:0.13, G:0.34, T:0.18
Consensus pattern (33 bp):
AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
Found at i:870949 original size:20 final size:19
Alignment explanation
Indices: 870924--870997 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
870914 AAAATGCCTG
*
870924 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATG-AA
* *
870944 AATGTATCGATATAATGAGC
1 AATGTATCGATACAATGA-A
870964 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
870984 AATGTATCGATACA
1 AATGTATCGATACA
870998 TTTGGGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:871056 original size:13 final size:13
Alignment explanation
Indices: 871038--871094 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
871028 AAAGATTGAC
871038 GTATCGATACAAT
1 GTATCGATACAAT
871051 GTATCGATAC-A-
1 GTATCGATACAAT
*
871062 -T-T-GA-ATAAT
1 GTATCGATACAAT
871071 GTATCGATACAAT
1 GTATCGATACAAT
*
871084 GTATCAATACA
1 GTATCGATACA
871095 TTGAATAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 1 0.03
10 2 0.06
11 1 0.03
12 3 0.09
13 24 0.69
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:871058 original size:33 final size:33
Alignment explanation
Indices: 871016--871114 Score: 99
Period size: 33 Copynumber: 3.0 Consensus size: 33
871006 AACTTCCTAG
* * *
871016 ATGTATCGATATAAAGATTGACGTATCGATACA
1 ATGTATCGATACAAAGAATAACGTATCGATACA
** *
871049 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAACGTATCGATACA
* ** * *
871082 ATGTATCAATACATTGAATAATGTATCAATACA
1 ATGTATCGATACAAAGAATAACGTATCGATACA
871115 TTTCCTTGGC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAACGTATCGATACA
Found at i:871073 original size:20 final size:20
Alignment explanation
Indices: 871048--871116 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
871038 GTATCGATAC
*
871048 AATGTATCGATACATTGAAT
1 AATGTATCAATACATTGAAT
*
871068 AATGTATCGATAC-----A-
1 AATGTATCAATACATTGAAT
871082 -ATGTATCAATACATTGAAT
1 AATGTATCAATACATTGAAT
871101 AATGTATCAATACATT
1 AATGTATCAATACATT
871117 TCCTTGGCAG
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.27
15 1 0.02
18 1 0.02
20 28 0.68
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (20 bp):
AATGTATCAATACATTGAAT
Found at i:872176 original size:119 final size:119
Alignment explanation
Indices: 872033--872289 Score: 312
Period size: 119 Copynumber: 2.2 Consensus size: 119
872023 AGGAAGTGTG
* *
872033 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTCGGCTTT-AAAAGGAAAAGGCGTCC
*
872097 TGCCCTTTAAGGACCGGAAGGTGCCACCAACTTGTGT-GGCTTCAAAAAGAAAACA
65 TGCCCTCTAAGGA-CGGAAGGTGCCACCAACTTGTGTAGGCTTCAAAAAGAAAACA
* * * *
872152 TCCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAGGAGAATGCGTCCT
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTCGGCTTTAAAAGGAAAAGGCGTCCT
* * * * * * *
872217 GCTCTCTGAGGACTGAAGGTGCCACTAGCTTGTGTAGGCTT-TAAAAG---GCA
66 GCCCTCTAAGGACGGAAGGTGCCACCAACTTGTGTAGGCTTCAAAAAGAAAACA
*
872267 TCTTGCTCTTTGAGGAC-AAAAAG
1 TCCTGCTCTTTGAGGACTAAAAAG
872290 GCGAAAGGAG
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
114 6 0.05
115 17 0.14
118 29 0.24
119 68 0.57
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (119 bp):
TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTCGGCTTTAAAAGGAAAAGGCGTCCT
GCCCTCTAAGGACGGAAGGTGCCACCAACTTGTGTAGGCTTCAAAAAGAAAACA
Found at i:872186 original size:58 final size:60
Alignment explanation
Indices: 872033--872262 Score: 241
Period size: 61 Copynumber: 3.9 Consensus size: 60
872023 AGGAAGTGTG
* * * *
872033 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAAGAAAA-GCA
* * * * * *
872094 TCCTGCCCTTTAAGGACCGGAAGGTGCCACCAACTTGTGT-GGCTTCAAAAAGAAAA-CA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAAGAAAAGCA
* * * * *
872152 TCCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAGGAGAATGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAAGA-AAAGCA
* * * * *
872213 TCCTGCTCTCTGAGGACTG-AAGGTGCCACTAGCTTGTGTAGGCTTTAAAA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTCGGCTTTAAAA
872263 GGCATCTTGC
Statistics
Matches: 139, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
58 34 0.24
59 11 0.08
60 43 0.31
61 51 0.37
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAAGAAAAGCA
Found at i:872416 original size:60 final size:60
Alignment explanation
Indices: 872309--872534 Score: 259
Period size: 60 Copynumber: 3.8 Consensus size: 60
872299 GAGAGCATCC
872309 TGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCA
1 TGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAGGCGTCA
* * * * *
872370 TGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGTGTCC
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GAAAGGCGTCA
* * * * * *
872430 TACTCTTTAAGGACTGGAGGGTGCCACCAACTCGTCTGGGCTTT---A--AAAGGCATCA
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGGCGTCA
* *
872485 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
872535 CGTCCTGCTC
Statistics
Matches: 136, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
55 45 0.33
58 2 0.01
59 3 0.02
60 47 0.35
61 39 0.29
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (60 bp):
TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGGCGTCA
Found at i:872498 original size:55 final size:56
Alignment explanation
Indices: 872306--872554 Score: 245
Period size: 55 Copynumber: 4.3 Consensus size: 56
872296 GGAGAGAGCA
872306 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTT--AA--A-AAGGCG
* * * *
872367 TCATGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAAGGCG
* * * * * *
872427 TCCTACTCTTTAAGGACTGGAGGGTGCCACCAACTCGTCTGGGCTTT-AAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCG
* * *
872482 TCATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCG
*
872537 TCCTGCTCTTTAAGGACT
1 TCCTGCTCTTTGAGGACT
872555 AAAGGGTGAA
Statistics
Matches: 157, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
55 68 0.43
59 3 0.02
60 42 0.27
61 41 0.26
63 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (56 bp):
TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCG
Found at i:872594 original size:270 final size:270
Alignment explanation
Indices: 872033--873968 Score: 1260
Period size: 272 Copynumber: 6.8 Consensus size: 270
872023 AGGAAGTGTG
* *
872033 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTC
1 TCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTC
* * * *
872096 CTGCCCTTTAAGGACCGGAAGGTGCCACCAACTTGTGT-GGCTTCAAAAAGAAAACA---TCCTG
64 CTGCTCTTTAAGGA-CTGAAGGTGCCACCAACTTGTGTGGGCTT-TAAAAGAAAA-AGGGTCCTA
* ** * *
872157 CTCTTTGGGGACTAAAAAGTGCCACCAACTTGTGTCGGCTTTAAAAGGAGAATGCGTCCTGCTCT
126 CTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA--AG---GCGTCCTGCTCT
* * * * * *
872222 CTGAGGACTG-AAGGTGCCACTAGCTTGTGTAGGCTTTAAAAGGCATCTTGCTCTTTGAGGACAA
186 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAA
872286 AAAGGCGAAAGGAGAGAGCA
251 AAAGGCGAAAGGAGAGAGCA
* *
872306 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCAT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* * *
872371 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGTGTCCTACTCT
66 GCTCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGG-GTCCTACTCT
* * * * * *
872436 TTAAGGACTGGAGGGTGCCACCAACTCGTCTGGGCTTT-AAAAGGCATCATGCTCTTTGAGGACT
130 TTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCTTTGAGGACT
* * * * *
872500 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGAA
195 GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAA
*
872565 AGGAGAGAGCG
260 AGGAGAGAGCA
* * * * *
872576 TCTTGCTCTTTAAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* * *
872641 GTTTTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTC
66 GCTCTTTAAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGG-GTCCTACTC
* *
872706 TTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGTGTCCTGCTCTTTG
129 TTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---A--AAAAGGCGTCCTGCTCTTTG
* ** *
872771 AGGACT-AAAGGTGCCACCAACTTGTGTGCGCTTTAAAAAGAAAAAAAAATGTCCTGCTCTTTGA
189 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG------GCA--TCCTGCTCTTTAA
* * * *
872835 GGACTAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAAAAGCG
245 GGACAAAAAG-GCGA--AA--------GG--------AG----AGAGCA
* * *
872884 TCCTGCTCTTTGAGGACT-GGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTAGGA-AGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
* * *
872948 TACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCC
65 TGCTCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG----AAAAAGG-GTCC
* * * * *
873013 TGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAGGTGTCCTGCTCTTTG
124 TACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCTTTG
* * * * * * **
873077 AGGACTAAAGGGTGAAAGGAGAGAGCATCCTACTCTTTGAGGAC--TAGAAAGTGCCA-CCAACT
189 AGGAC-------TGAAA-G-GTG-CCA-CCAACT-TGTGTGGGCTTTA-AAAG-G-CATCCTGCT
* ** * * * *
873139 -TATGTGGGCTTTGAAAA---GAAA--AAAG-GCG
239 CTTTAAGGAC---AAAAAGGCGAAAGGAGAGAGCA
* * * * * *
873167 TCTTGCTTTTTGAGGACTA--AAGGTGCCACCAACTCGTCTAGGCTTTAAGAGGAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
* ** *
873230 TGCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT----G--AAAGGCATCCTACT
65 TGCTCTTTAAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGG-GTCCTACT
**
873289 CTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGC
128 CTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGC-TT---------TAAAAAGGCGTCCTGC
* * ** *
873354 TCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
183 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGA
* *
873419 CTAAAAGGTGAAAGGAGAGAGCA
248 CAAAAAGGCGAAAGGAGAGAGCA
* *
873442 TCCTACTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGT
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAAAGGCGT
* * * * * * * * * * *
873506 CTTGCTTTTTGAGGACTAAAGGCGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCATCCTGC
63 CCTGCTCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGG-GTCCTAC
** ** * * * *
873571 TCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT-GAAAGGCATCCTACTCTTTGAAG
127 TCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCTTTGAGG
* * * *
873635 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGCGTCCTACTCTTTGAGGACTG
192 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCATCCTGCTCTTTAAGGAC-A
* * * * * *
873700 GAATGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
250 AAAAG-GCGA--AA--------GG---AGAGA-GCA
* * * *
873736 TCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCA
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
* *
873800 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-AGAAAAGGCGTCCTGC
65 TGCTCTTTAAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA-AAAAGG-GTCCTAC
* *
873864 TCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGCGTCCTGCTCTTTG
127 TCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---AAAAAGGCGTCCTGCTCTTTG
* ** *
873928 AGGACT-AGAGGGTGCCAATAACTCGTGTGGGCTTTGAAAAG
189 AGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG
873969 AAAAAGGCGT
Statistics
Matches: 1333, Mismatches: 197, Indels: 248
0.75 0.11 0.14
Matches are distributed among these distances:
269 23 0.02
270 132 0.10
271 92 0.07
272 151 0.11
273 75 0.06
274 9 0.01
275 56 0.04
276 56 0.04
277 54 0.04
278 46 0.03
279 3 0.00
280 2 0.00
281 1 0.00
282 56 0.04
283 115 0.09
284 1 0.00
285 21 0.02
286 2 0.00
288 3 0.00
290 2 0.00
291 6 0.00
292 49 0.04
293 59 0.04
294 47 0.04
295 1 0.00
296 46 0.03
304 2 0.00
306 26 0.02
307 29 0.02
308 75 0.06
309 6 0.00
310 4 0.00
312 57 0.04
313 2 0.00
314 3 0.00
315 1 0.00
316 3 0.00
317 7 0.01
318 5 0.00
319 5 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (270 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
GCTCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGGTCCTACTCTT
TGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCTTTGAGGACTG
AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAAA
GGAGAGAGCA
Found at i:872651 original size:210 final size:212
Alignment explanation
Indices: 872354--872781 Score: 551
Period size: 210 Copynumber: 2.0 Consensus size: 212
872344 GTGGGCTTTA
* *
872354 AAAGGAGAAGGCGTCATGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGA
1 AAAGGAGAAGGCGTCATGCTCTTTAAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGA
* *
872419 AAAAGGTGTCCTACTCTTTAAGGACTGGAGGGTGCCACCAACTCGTCTGGGCTTT-AAAAGGCAT
66 AAAAGGTGTCCTACTCTTTAAGGACTAGAAGGTGCCACCAACTCGTCTGGGCTTTAAAAAGGCAT
*
872483 CATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-G-AAAGGCGTCCTGCTCT
131 CATACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCTCT
872546 TTAAGGACTAAAGGGTG
196 TTAAGGACTAAAGGGTG
* *
872563 AAAGGAG-AGAGCGTCTTGCTCTTTAAGGACT-AAGAAGTGCCACCAACTTGTGTGGGCTTTAAA
1 AAAGGAGAAG-GCGTCATGCTCTTTAAGGACTGAAG--GTGCCACCAACTTATGTGGGCTTTAAA
** * * *
872626 AGAAAAAGGTGTCCTGTTTTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
63 AGAAAAAGGTGTCCTACTCTTTAAGGACTAGAAGGTGCCACCAACTCGTCTGGGCTTT---A--A
* * * *
872691 AAAGGCGTCCTACTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAG
123 AAAGGCATCATACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---A-GAAAAG
* *
872756 GTGTCCTGCTCTTTGAGGACTAAAGG
184 GCGTCCTGCTCTTTAAGGACTAAAGG
872782 TGCCACCAAC
Statistics
Matches: 186, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
208 5 0.03
209 26 0.14
210 76 0.41
216 50 0.27
221 1 0.01
222 28 0.15
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (212 bp):
AAAGGAGAAGGCGTCATGCTCTTTAAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGA
AAAAGGTGTCCTACTCTTTAAGGACTAGAAGGTGCCACCAACTCGTCTGGGCTTTAAAAAGGCAT
CATACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCTCT
TTAAGGACTAAAGGGTG
Found at i:872679 original size:61 final size:61
Alignment explanation
Indices: 872573--873087 Score: 586
Period size: 61 Copynumber: 8.4 Consensus size: 61
872563 AAAGGAGAGA
* *
872573 GCGTCTTGCTCTTTAAGGACTAAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * * *
872634 GTGTCCTGTTTTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * * *
872695 GCGTCCTACTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * *
872756 GTGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGCGCTTTAAAAAGAAAAAAAA
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG--AAAAAG
** * * *
872819 ATGTCCTGCTCTTTGAGGACTA-AAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAAAA
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAAG
* * * * *
872881 GCGTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
*
872942 GCGTCCTACTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAA
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG----AAAAA
873006 G
61 G
*
873007 GCGTCCTGCTCTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G--AAAG
1 GCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
*
873062 GTGTCCTGCTCTTTGAGGACTA-AAGG
1 GCGTCCTGCTCTTTGAGGACTAGAAGG
873088 GTGAAAGGAG
Statistics
Matches: 396, Mismatches: 45, Indels: 33
0.84 0.09 0.07
Matches are distributed among these distances:
54 4 0.01
55 22 0.06
56 1 0.00
60 55 0.14
61 155 0.39
62 30 0.08
63 78 0.20
64 1 0.00
65 23 0.06
66 27 0.07
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
Found at i:872914 original size:186 final size:184
Alignment explanation
Indices: 872573--873061 Score: 680
Period size: 186 Copynumber: 2.6 Consensus size: 184
872563 AAAGGAGAGA
* * * *
872573 GCGTCTTGCTCTTTAAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG--AAAAAGG
1 GCGTCCTGCTCTTTGAGGACTAA-AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAAG
* * * * *
872635 TGTCCTGTTTTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTC
65 TGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGCGTC
* *
872700 CTACTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGAAAAG
129 CTACTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTGAA-AGGAAAAG
* * *
872756 GTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGCGCTTTAAAAAGAAAAAAAAAT
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAAGT
* *
872821 GTCCTGCTCTTTGAGGACTAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAAAAGCGTC
66 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAAAGCGTC
* *
872886 CTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAG
129 CTACTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAG
*
872942 GCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAA-AAAAA-
* * *
873007 GCGTCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
64 GTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
873062 GTGTCCTGCT
Statistics
Matches: 270, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
182 24 0.09
183 25 0.09
184 25 0.09
185 28 0.10
186 113 0.42
187 7 0.03
188 22 0.08
189 26 0.10
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (184 bp):
GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAAGT
GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGCGTCCT
ACTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAG
Found at i:872948 original size:123 final size:121
Alignment explanation
Indices: 872581--873062 Score: 590
Period size: 123 Copynumber: 3.9 Consensus size: 121
872571 GAGCGTCTTG
* * * * *
872581 CTCTTTAAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGTGTCCTGTTTT
1 CTCTTTGAGGACTAA-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGCGTCCTGCTCT
*
872646 TTAAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTA
65 TTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTA
* * * * * * *
872703 CTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGTGTCCTGCTCT
1 CTCTTTGAGGACT-AAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGCGTCCTGCTCT
* * *** *
872768 TTGAGGACT-AAAGGTGCCACCAACTTGTGTGCGCTTTAAAAAGAAAAAAAAATGTCCTG
65 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG--GAAAAGGCGTCCTA
*
872827 CTCTTTGAGGACTAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAAAAGCGTCCTGCTC
1 CTCTTTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAAAGCGTCCTGCTC
* * * *
872892 TTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAGGCGTCCTA
64 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTA
*
872950 CTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTG
1 CTCTTTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG--A-AAAAA-GCGTCCTG
* *
873015 CTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
61 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
873063 TGTCCTGCTC
Statistics
Matches: 311, Mismatches: 39, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
121 26 0.08
122 69 0.22
123 80 0.26
124 27 0.09
125 33 0.11
126 76 0.24
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (121 bp):
CTCTTTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGCGTCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTA
Found at i:873275 original size:217 final size:217
Alignment explanation
Indices: 872884--873307 Score: 573
Period size: 217 Copynumber: 1.9 Consensus size: 217
872874 AAAAAAAGCG
* * ** * *
872884 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAGGCGTCCT
1 TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGGCGTCCT
* * * *
872949 ACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCT
66 ACTCTTTGAGGACTAAAGGTGCCACCAACTCGTCTAGGCTTT--AAAG-AAGAAAAAGGCGTCCT
* * * ** ** *
873014 GCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAG
128 GCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAG
*
873079 GACTAAAGGGTGAAAGGAGAGAGCA
193 GACTAAAAGGTGAAAGGAGAGAGCA
*
873104 TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTATGTGGGCTTTGAAAAGAAAAAAGGCGTC
1 TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTCATGTGGGCTTTG-AAAG-AAAAAGGCGTC
* * * *
873169 TTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTCTAGGCTTT-AAG-AGGAAAAGGCGTCCTG
64 CTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTCTAGGCTTTAAAGAAGAAAAAGGCGTCCTG
873232 CTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGG
129 CTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGG
873297 ACTAAAAGGTG
194 ACTAAAAGGTG
873308 CCACCAACTT
Statistics
Matches: 178, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
217 81 0.46
219 3 0.02
220 42 0.24
221 4 0.02
222 48 0.27
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (217 bp):
TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGGCGTCCT
ACTCTTTGAGGACTAAAGGTGCCACCAACTCGTCTAGGCTTTAAAGAAGAAAAAGGCGTCCTGCT
CTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGAC
TAAAAGGTGAAAGGAGAGAGCA
Found at i:873291 original size:55 final size:55
Alignment explanation
Indices: 873220--873328 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
873210 TTTAAGAGGA
* *
873220 AAAGGCGTCCTGCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCATCCTACTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTG
* **
873275 AAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGCATCCTACTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
873329 AAAAAGAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (55 bp):
AAAGGCATCCTACTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTG
Found at i:873378 original size:121 final size:116
Alignment explanation
Indices: 873175--873428 Score: 339
Period size: 121 Copynumber: 2.2 Consensus size: 116
873165 CGTCTTGCTT
*
873175 TTTGAGGACT-AAAGGTGCCACCAACTCGTCTAGGCTTTAAGAGGAAAAGGCGTCCTGCTCTTTA
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTCTAGGCTTTAAGAGAAAAAGGCGTCCTGCTCTTTA
873239 AGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTC
66 AGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTC
* * * *
873290 TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTCTAGGCTTT---AAG--AGAAAAAGGCGTCCTGCT
* * * ** ** *
873355 CTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTC
61 CTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTC
873411 TTTGAGGACTAAAAGGTG
1 TTTGAGGACTAAAAGGTG
873429 AAAGGAGAGA
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
115 10 0.08
116 25 0.21
119 3 0.03
121 82 0.68
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (116 bp):
TTTGAGGACTAAAAGGTGCCACCAACTCGTCTAGGCTTTAAGAGAAAAAGGCGTCCTGCTCTTTA
AGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTC
Found at i:873387 original size:338 final size:337
Alignment explanation
Indices: 872759--873966 Score: 1547
Period size: 338 Copynumber: 3.5 Consensus size: 337
872749 GGAAAAGGTG
* * * ***
872759 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGCGCTTTAAAAAGAAAAAAAAATGT
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AAAAAAGGCGT
* * * * * * * * *
872823 CCTGCTCTTTGAGGACTAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAAAAGCGTCCT
65 CTTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTGTAGGCTTT-AAGAG-GAAAAGGCGTCCT
** *** * *
872888 GCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAGGCGTCCTACTC
128 GCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCATCCTACTC
872953 TTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCTC
187 TTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCTC
873018 TTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT
252 TTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT
*
873083 AAAGGGTGAAAGGAGAGAGCA
317 AAAAGGTGAAAGGAGAGAGCA
* *
873104 TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTATGTGGGCTTTGAAAAGAAAAAAGGCGTC
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGTC
*
873169 TTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTCTAGGCTTTAAGAGGAAAAGGCGTCCTGCT
66 TTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCGTCCTGCT
*
873234 CTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGAC
131 CTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGAC
873299 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCTCTTTGAGGA
196 T-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCTCTTTGAGGA
873364 TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTG
260 TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTG
873429 AAAGGAGAGAGCA
325 AAAGGAGAGAGCA
873442 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGTC
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGTC
* *
873507 TTGCTTTTTGAGGACTAAAGGCGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCATCCTGCT
66 TTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCGTCCTGCT
*
873572 CTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAAGAC
131 CTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGAC
** *
873637 TGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAG--AGGAAAAGGCGTCCTACTCTTTGAGGA
196 T-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCTCTTTGAGGA
* * * *
873697 CTGGAATGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTG
260 TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTG
*
873762 CCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
325 --A--AA--------GG--------AG-AGA-GCA
* * *
873797 TCATGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAA-AGAAAAGGCGT
1 TCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGT
* * * * * *
873859 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAA-A-AAAAATGCGTCCTGC
65 CTTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCGTCCTGC
* *** ** *
873922 TCTTTGAGGACTAGAGGGTGCCAATAACTCGTGTGGGCTTTGAAA
130 TCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAA
873967 AGAAAAAGGC
Statistics
Matches: 777, Mismatches: 61, Indels: 44
0.88 0.07 0.05
Matches are distributed among these distances:
333 85 0.11
335 4 0.01
337 26 0.03
338 358 0.46
343 47 0.06
344 4 0.01
345 66 0.08
346 29 0.04
351 50 0.06
352 1 0.00
353 54 0.07
354 7 0.01
355 46 0.06
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (337 bp):
TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGTC
TTGCTTTTTGAGGACTAAAGGTGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCGTCCTGCT
CTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGAC
TAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAATAAAAAGGCGTCCTGCTCTTTGAGGAT
TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGA
AAGGAGAGAGCA
Found at i:873692 original size:116 final size:115
Alignment explanation
Indices: 873498--873966 Score: 609
Period size: 116 Copynumber: 4.0 Consensus size: 115
873488 TGAAAAGAAA
* * * * *
873498 AAAGGCGTCTTGCTTTTTGAGGACTAAAGGCGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGG
1 AAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGG
**
873563 CATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTG
66 CATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* * *
873613 AAAGGCATCCTACTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAG
1 AAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAG
* * ** *
873678 GCGTCCTACTCTTTGAGGACTGGAATGTGCCACCAACTTGTGTGGGCTTTG
65 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
873729 AAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 AAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAG
* *
873794 GCATCATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
65 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-----G
* *
873850 AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAA-A-AAAAAT
1 -AAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAG
* * * ** *
873913 GCGTCCTGCTCTTTGAGGACTAGAGGGTGCCAATAACTCGTGTGGGCTTTG
65 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
873964 AAA
1 AAA
873967 AGAAAAAGGC
Statistics
Matches: 312, Mismatches: 35, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
113 3 0.01
114 1 0.00
115 20 0.06
116 185 0.59
119 46 0.15
120 1 0.00
121 31 0.10
122 25 0.08
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (115 bp):
AAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGG
CATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:873708 original size:61 final size:61
Alignment explanation
Indices: 873442--873995 Score: 663
Period size: 61 Copynumber: 9.3 Consensus size: 61
873432 GGAGAGAGCA
* * *
873442 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAAAGGCG
* * * * * * *
873505 TCTTGCTTTTTGAGGACT-AAAGGCGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
** *
873565 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * * *
873620 TCCTACTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* ** *
873681 TCCTACTCTTTGAGGACTGGAATGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* *
873736 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * *
873797 TCATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
*
873858 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAA--AAAATGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * ** * *
873916 TCCTGCTCTTTGAGGACTAGAGGGTGCCAATAACTCGTGTGGGCTTTGAAAAGAAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCG
*
873978 TCTTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
873996 GGAAGGGCTA
Statistics
Matches: 431, Mismatches: 43, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
55 99 0.23
56 2 0.00
58 25 0.06
59 23 0.05
60 61 0.14
61 158 0.37
62 48 0.11
63 15 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
Found at i:873828 original size:177 final size:176
Alignment explanation
Indices: 873447--874001 Score: 683
Period size: 177 Copynumber: 3.1 Consensus size: 176
873437 GAGCATCCTA
* *
873447 CTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGGCGTCTTGC
1 CTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAAAGGCGTCCTGC
* * * * *
873511 TTTTTGAGGACTAAAGGCGCCACCAACTCGTGTAGGCTTTAAGAGGAAAAGGCATCCTGCTCTTT
63 TCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT---A-G-AAAGGCGTCCTGCTCTTT
** * *
873576 GAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCATCCTA
123 GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCATG
* * *
873625 CTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGCGTCCTACTCT
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCT
* *
873690 TTGAGGACTGGAATGTGCCACCAACTTGTGTGGGCTTT-GAAAGGCGTCCTGCTCTTTGAGGACT
66 TTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTCTTTGAGGACT
873754 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCATG
130 AAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCATCATG
*
873802 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTCCTGCTCT
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCT
* *
873867 TTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGCGTCCTGCTCTTTGAGGA
66 TTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT---AGAAAGGCGTCCTGCTCTTTGAGGA
* * ** * * *
873932 CTAGAGGGTGCCAATAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCTTG
128 CTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAGGCATCATG
*
873983 CTCTTTGAGGACTGGAAGG
1 CTCTTTGAGGACTGAAAGG
874002 GCTAAAATAT
Statistics
Matches: 331, Mismatches: 33, Indels: 23
0.86 0.09 0.06
Matches are distributed among these distances:
171 51 0.15
172 1 0.00
176 50 0.15
177 107 0.32
178 39 0.12
179 1 0.00
180 53 0.16
181 29 0.09
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (176 bp):
CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCT
TTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCGTCCTGCTCTTTGAGGACTA
AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCATG
Found at i:882858 original size:20 final size:19
Alignment explanation
Indices: 882833--882906 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
882823 AAAATGCCTG
*
882833 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATG-AA
*
882853 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
*
882873 AATGTATCGATACAATGCAG
1 AATGTATCGATACAATG-AA
882893 AATGTATCGATACA
1 AATGTATCGATACA
882907 TCTGGGTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:882980 original size:20 final size:20
Alignment explanation
Indices: 882955--882992 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
882945 ACGTATCGAT
882955 ACAATGTATCGATACATTGA
1 ACAATGTATCGATACATTGA
882975 ACAATGTATCGATACATT
1 ACAATGTATCGATACATT
882993 TTCTTGGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (20 bp):
ACAATGTATCGATACATTGA
Done.