Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold331
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1394875
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 2 of 8
Found at i:337241 original size:21 final size:20
Alignment explanation
Indices: 337195--337241 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
337185 TTTGAAGGTG
*
337195 ATTTTGATGAAAAACGATGT
1 ATTTTGATGAAAAACGAAGT
*
337215 ACTTTGAAGTGAAAAAC-AAGT
1 ATTTTG-A-TGAAAAACGAAGT
337236 ATTTTG
1 ATTTTG
337242 CAAAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:339951 original size:476 final size:476
Alignment explanation
Indices: 339020--345737 Score: 7330
Period size: 476 Copynumber: 14.2 Consensus size: 476
339010 ATCCTTGTAG
* * * * * *
339020 GAAGACTAAGTTTATGCTGCCTATTCATCAAAAGAA-TGGTATTAGTATGACTATTCATATTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * * *
339084 TTTATTTAAGAGACAAACTTTCATTCAATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGATAC
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * * * * * * *
339149 CAAAGCATCAAGGGCATGTATCCTAATGAAAGAAATGTGTTTTTGGTTTC-ATTCATGAAAAAAA
131 CAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAA
** * * * * *
339213 TGGAGACGGTCACGAGAATTAATACTTTCCTTATTTAAGGGATGAAGTTTAATTTTAAGGAAAAT
196 TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAAT
* * * *
339278 AGGGCAAAGAAAAGATTTCCCTACAAAAGAAAATCATCAATACCATTTATCCTAATAATGAGAAT
261 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAT
* * *
339343 GTGTTTGTTGTGCCTAATCAGAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTC-CTAAT
326 GTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC-AAT
* * * *
339407 TGAGGCACGAATTTAGACTTTACAAAAATTTGTGGGAAGAAAGTCTTTCTTACGAAACCAAAGCA
390 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCT
* *
339472 TCAATATCGGGTATCCCTATTA
455 TCAATATCGTGTATCCTTATTA
* * * * *
339494 AAAAACTAAGTTTATGGTGCCTAATGCTGAAAAGAATTGGGATTAGTATTATTATTCATGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * * *
339559 CTTATTTAAGAGACAAACTTTGATTCAACCAATAACGGTTGAAAGAAATGCTTTTCTTACGACAT
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * ** * *
339624 CAAAGCATCAATTTCATGCGTCCTAATAAAAGGAATGTATTTCTT-ATTCCTAATCATGAAAAGA
131 CAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTT-TTGGTTCCTAATCATGAAAAGA
* * *
339688 ATGGAGACTATTACGAGAATCAATGCTTACTTTTTTTAAGGGATGAACTTTAATTTTAAGGAAAA
195 ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
* * * * * *
339753 TAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTGATAAAGAGAA
260 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAA
* *
339818 TGTGTTTATAGTACCTAATCAGAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTC-CTAA
325 TGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC-AA
* * * * **
339882 TTGAGGCATGAACTTAGACTTTACCAAAATTAGTGCGAAGAAAAG-CTTTCTTACGAAATAAAAG
389 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTTACGAAACCAAAG
* * *
339946 CATCAATATCTTGTATCCTTATGA
453 CTTCAATATCGTGTATCCTTATTA
* * * *
339970 GAAAACTAAGTTTATGGTGCCTAATTCTAAAAAGAATAGGGATTAGTATGACTATTCATGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * *
340035 CTTATTTGAGAGACAAACATTGATTCTATCAAAAACGGTTTAAAGAAATGCTTTTC-T--G----
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * * * * * * * *
340093 ----GC-T-ACAT-TAATGTGTCCTATTCAATGGAATGTGTTTTTGGTTCCCAATCATTAAAGGG
131 CAAAGCGTCA-ATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGA
* * * * *
340151 ATGGAGACTATTATGAGAATTAATGCTTGCCTTATCTAAGAGATGAACTTTGATTTTAAGGAAAA
195 ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
* * * * *
340216 TAGGGGAAAGAAAAGATTTTCAAGCAAAAAAAAATCAAT-AATATCATTTATCCTAATGAGGAGA
260 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGGAGA
* * * * *
340280 ATATGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCACAG
324 ATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA
* * * * ** * * *
340345 CTAAGGCACGAAGTTAGGCTTTGTAAAAATTAGTGGGAAGAAAGCCTTTCTTACAAAACCAATGC
389 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* *
340410 TTTAGTATCGTGTATCCTTATTA
454 TTCAATATCGTGTATCCTTATTA
* * * *
340433 GAAGACTAAGTTTATGGTGCCTAATCTTGAGAAGAATAGGGATTAGTAT-ACTATTCATATTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* ** * *
340497 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCTGGCTACAG
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * * * * *
340562 TAAAGCGTCAATGTCATCTATCCTATTGAATA--TATGTGTTTTTGGTTCCTAATCATGAAAGGA
131 CAAAGCGTCAATGTCATGTATCCTAAT-AAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGA
* * * *
340625 ATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGAAGAACTTTGATATTAAGGAAAA
195 ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
* * *
340690 TAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTAT-CTCGATAAGGAGA
260 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATAAGGAGA
* * *
340754 ATGTGTTTGTAGTACCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCAA
324 ATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA
* * * *
340819 TTAAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA-CCTTTTCTTACAAAACAAAAG
389 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTACGAAACCAAAG
* * *
340883 CATCAATATCATGTATCCTTATGA
453 CTTCAATATCGTGTATCCTTATTA
* * * *
340907 GAAGACTAAGTTTAGGGTGCCTAATTCTAAAAAGAATGGGGATTAGTATGAC---T-A----TGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * * * * *
340964 CTTATTTAAGAGACAAACATTGATTCTATTAAAAATGGCTGAAAGAAATGCTTTTCTTGCAACAC
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * ** * * * * * * * *
341029 CAATGTGTTGATGTCGTGTATCCTAATGAAAGGAATATCTTTCTGGTTCC-ATTTATGAAAAAAA
131 CAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATG-AAAAGA
** * * * * *
341093 ATGGAGACGGTTATGAGAATCAATGCTTGCTTTATTTAAAGGATGAATTTTAATTTTGAGGAAAA
195 ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
* * * *
341158 TAAGG-AGAAGAAAAGATTTTCAAGCAAAAG-AAATACATCAATATCATTTATCCTAATTAGGAG
260 TAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATATCATTTATCCTAATAAGGAG
* * * *
341221 AATATGTTTATAGTGCCTAA-CAACAAAATGAAAGAAGATCATTACTAGAATCCATGTCTGTCAC
323 AATGTGTTTATAGTGCCTAATC-AGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
* ** * * * *
341285 ATTTGAGGCATAAACTTAGGCTTTAGAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAT
387 AATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* *
341350 GCTTCAATATCGCGTATCCCTATTA
452 GCTTCAATATCGTGTATCCTTATTA
* * * * *
341375 GAAGGCTAAGTTTACGGTGCCTAATCCTGAAAAGAATAGGGATTAGTTTGATTATTCATGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * * * *
341440 CTTAATTAAAAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTGATGATAC
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * * * * * *
341505 TAAAGCGTCAATATCATGTATCCTATTGAATGAAATGTGTTTTTGGTTCCTAATCATGAAAGGAA
131 CAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAA
* ** *
341570 TGGAGACTATTACGAGAATCAACGCTTGCCTTATTTAAGGGATGAACTTTGGTTTTAAGGAAATT
196 TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAAT
* * *
341635 GGGGCAAAGAAAAGATTTCCGA-GCAAAAAAAAATCAAT-AATATCATTTATCCTAATGAGGAGA
261 AGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGGAGA
** * *** * * * *
341698 ATGTGTTTATAGTGAGTAATCATAATGCGAATGAAGATAATTACTAAAATCCAAGTTTGTCATAA
324 ATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA
* * * * * *
341763 TTGAGGCACGAACTTAGACTTTAGC-AAAATTTGAGGGAAGAAAGCCATTATTACAAAACCAATG
389 TTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
* *
341827 CTTCAATATCATATATCCTTA-TA
453 CTTCAATATCGTGTATCCTTATTA
* * * * * * *
341850 GGAAGACTAAGTTTATGCTGTCTATTCCTCAAAAGAA-TGGTATTAGTCTGACTATTTATAG-TT
1 -GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCAT-GTTT
* * * *
341913 GTTTTATTTAAGAGAGAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGAT
64 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGAC
* * * * *
341978 ACCAAAGCGTCAATGGCATCTATCCTAACGAAAA-GAATGTGTTTTTGGTTTC-ATTCATGAAAA
129 ACCAAAGCGTCAATGTCATGTATCCTAA-TAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAA
* * ** * *
342041 AAATGGATACGGTCACGAGAATCAATAG-TTGCCTTATTTAAGGGATGAAGTTTAATTTTAAGGA
193 GAATGGAGACTATTACGAGAATCAAT-GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGA
* * * *
342105 AAATAGGGCAAAGAAAAGATTTCCCTACAAAAGAAAATCATCAATACCATTTATCCTAATAAAGA
257 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGA
* * *
342170 GAATGTGTTTGTTGTGCCTAATCAGAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTC-C
322 GAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
* * *
342234 TAATTGAGGCACGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTCCTACGAAACCAA
387 -AATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* **
342299 AGCATCAATATCAAGTATCCTTATTA
451 AGCTTCAATATCGTGTATCCTTATTA
* * * *
342325 GAAAACTAAGTTTATGGTGCCTAATGCTGAAAAGAATTGGGATTAGTATTATTATTCATGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * * * *
342390 CTTATTTAAGAGACAAACTTTGATTCAATCAAAAACAGTTGAAAGAAATGGTTTTCTTATGACAT
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * *
342455 CAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTATTTCTT-ATTCCTAATCATGAAAAGA
131 CAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTT-TTGGTTCCTAATCATGAAAAGA
* * *
342519 ATGGAGACTATTACGAGAATCAATGCTTACCTTATTTCAGGGATGAACTTTAATTTTAAGGAACA
195 ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
* * * * * *
342584 TAGGACAATGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCTTGATAAGGAGAA
260 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAA
* * *
342649 TGTGTTTGTAGTACCTAATCAGAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTC-CTAA
325 TGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC-AA
* * * * **
342713 TTGAGGCATGAACTTAGACTTTACAAAAATTAGTGTGAAGAAA-AC---C-TACGAAATAAAAGC
389 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * **
342773 ATCAATATTGTGTATCTTTACGA
454 TTCAATATCGTGTATCCTTATTA
* * * ** *
342796 GAAAACTAAGTTTATGGTGCCTAATTCTAAAAATTATGGGGATTAGTATGACTATTCATGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * * * * *
342861 CTTATTTAAGACACAAACATTGATTCTTTCAAAAACAGTTGAAAGAAATACTTCTC-TA-G-CTA
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGAC-A
* * * * * *
342923 -C--A---TTAATG---TG--TCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATTAAAACG
130 CCAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAA-G
** * *
342977 -ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAACGATTAACTTTGATTTTAAGGAAA
194 AATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAA
* * *
343041 ATAGGGCAAAGAAAAGATTTTCAAGCAAAA-AAAATCAAT-AATATCATTTATCCTAATGAGGAG
259 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGGAG
* * * * *
343104 AATATGTTTATAGTGCCTAATTACAAAATCAATGAAGATCATTACTAGAATCGATGTTTGTCACA
323 AATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACA
** * * * * * *
343169 GCT-AGGGCATGAAGTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTACAAAACCAAT
388 ATTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
*
343233 GCTTCAATATCGTGTATCTTTATTA
452 GCTTCAATATCGTGTATCCTTATTA
* * * * *
343258 GAAGACTAGGTTTATGGTGCCTAATCTTGAGAAGAATAGGGATTAGTATGACTATTCATATTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * ** *
343323 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTAAAAGAAATGCTTTTCTGGCTAC-C
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
* * * * * * *
343387 CTAAAGCGTCAATGTCATCTATCC-AGTTGAATGAAATGTGTTTTTGGTTCCTAATCGTGAAAGG
131 C-AAAGCGTCAATGTCATGTATCCTA-ATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAG
* * * *
343451 AATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGAAGAACTTTGATATTAAGGAAA
194 AATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAA
* ** * * * *
343516 ATAGGGCAAAGAAAATATTTCCAACCAAAAGAAAATCAAT-AACATTATTTATCCTACTCAGGAG
259 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGGAG
* ** * ** * * * *
343580 AATGTGTTTATAATGAGTAATCATAAAGCGAATGTAGATAATTACTAAAATCCATGTTTGTCAAA
323 AATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACA
** * * * * * * *
343645 ATTGAGTTACGAACTTTGACTTTGAC-AAAATTTGAGGGAGGAAAACCTCTCTTACAAAACCAAA
388 ATTGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* * * **
343709 CCTTCAATATCGTATATCATTATGG
452 GCTTCAATATCGTGTATCCTTATTA
* * * * *
343734 GAAGACTACGTTTATGGTGCCTATTCCTCAAAAGAA-TGGGTATTAGTATGACTATTCTTGTTTA
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGG-ATTAGTATGACTATTCATGTTTG
* * * * * * * *
343798 TCTTATTTAAGTGATAAACTTTGATTCAATCAAAAACGATTGAAAGAAATGCTTTACTCATGTCA
65 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACA
* * *
343863 CCAAAGTGTCAATGTCATGTATCCTAA-AGAAAGGAATGTGTTTTTGGTGCCCAATCATGAAAA-
130 CCAAAGCGTCAATGTCATGTATCCTAATA-AAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAG
* * * * *
343926 AATTGGAGAATGTTACAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAACTTTATGGAA
194 AA-TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAA
* * *
343991 AATAGGGCAACGAAAAGATTTCCATGCAAAAGAGAAA-CATCAATATCATTTATCCTAATGACGA
258 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGA-AAATCATCAATATCATTTATCCTAATAAGGA
* * * *
344055 GAATATGTTTATAGTGCCTAACCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCAC
322 GAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
** * * * * * * *
344120 CGTTGAGGCACGAACTTAGGCATTACAAAAATTGGTGAGAAGAATGCCTTTTTTACGAAACGAAT
387 AATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
344185 GCTTCAATATCGTGTATCCTTATTA
452 GCTTCAATATCGTGTATCCTTATTA
* * *
344210 GAAGGCTAAGTTTATGGTGCCTAATCCTGAATAGAATGGGGATTAGTAT-A--A--CATGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
* * ** *
344270 CTTATTTAAG-GCACAAACTTTGATTCTATCAAAAATGGTTGAAAAAAATGCTTTTCTGGCAACA
66 CTTATTTAAGAG-ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACA
** * * * * * * *
344334 CTTAAGCGTCAATGTCATCTATCCTATTAAATGAAATGTATTTTTGGTTCGTAATCATGAAAGGA
130 CCAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGA
* * * * * * *
344399 ATGGAGAATGTTACGAGAATCAATGCTTACTTTATTTAAGAGATGAACTTTGATATTAAGGAAAA
195 ATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
* ** * * *
344464 TAAGGCAAAGAAAAGATTTCCAAACAAAAGAAAATCAACAATATCATTTATCCTGATGAGGAGAA
260 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAA
* ** * ** * * *
344529 TGTGTTTTTTA-TGAGTAATCATAAAGCGAATGAAGATAATTACTAAAATCCTTGTTTGTCACAA
325 TGTG-TTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA
* ** * *** *
344593 ATGAGGCACGGGCTTAGACTTTGA-TAAAATTTAAGGGAA-AAAGGCCTTTCTTACAAAACCAAA
389 TTGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGAAGAAA-GCCTTTCTTACGAAACCAAA
* * **
344656 GCTTCAAAATCGTATATCCTTATGG
452 GCTTCAATATCGTGTATCCTTATTA
* *
344681 GAAGATTAAGTTTATGGTGCCTATTCC-GAAAAAGAA-TGGGTATTAGTATGACTATTCATGTTT
1 GAAGACTAAGTTTATGGTGCCTAATCCTG-AAAAGAATTGGG-ATTAGTATGACTATTCATGTTT
* * * *
344744 GTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGTAAGAAATGTTTTTCTTGCGAC
64 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGAC
* * *
344809 ACCAAAGAGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTGCCCAATCATGGAAAA
129 ACCAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCAT-GAAAA
* * * * *
344874 AAATGGAGACTGTTACGAGAATCAATGCTTGCTTTTATTTAAGGGATGAAGTTTAATTTTATGGA
193 GAATGGAGACTATTACGAGAATCAATGCTTGC-CTTATTTAAGGGATGAACTTTAATTTTAAGGA
* * * *
344939 AAATAAGGCAACA-AAAAGATTTCCATGCAAAAGAAAAACATCTATATCATTTATCCTAATGAGG
257 AAATAGGGCAA-AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
* * * *
345003 AGAATATGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCA
321 AGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * ** *
345068 CAGTTGAGGCATGAACTTAGGCTTTGTAAAAATTGGTGGGAAGAATGCCTTTCTTACGAAACCAA
386 CAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * *
345133 TGTTTCAATATTGTGTATCCTTATTA
451 AGCTTCAATATCGTGTATCCTTATTA
* *
345159 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAAGAA-TGAGGATTAGTATGACTACTCTTGTTT
1 GAAGACTAAGTTTATGGTGCCTAATCCTG-AAAAGAATTG-GGATTAGTATGACTATTCATGTTT
* * * * * * * * *
345223 TTCTTGTTTAGGAGATAAATTTTGATTCTATCAAAAACAGTAGAAAGAAATGCTTTTCTTGCGAT
64 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGAC
* *
345288 ACCAAAGCGTCAATATCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAG
129 ACCAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAG
* * * ** *
345353 AATGGAGACTGTTACGAGAATTAATGCTTTCCTTATTT-AGGGACAAACTTTAATTTTATGGAAA
194 AATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAA
* * * **
345417 ATGGGGCAACGAAAAGATTTCCATGCAAAAGAGAAA-CATCAATATCATTTATCCTAATGACAAG
259 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGA-AAATCATCAATATCATTTATCCTAATAAGGAG
* *
345481 AATATGTTTATAGTGCCTAATC-GCAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
323 AATGTGTTTATAGTGCCTAATCAG-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
* * * * *
345545 AGTTGAGGCACGAACTTAGGCTTTACAAAAATTGGTAGGAAGAATGCCTTTCTTACGAAACCAAT
387 AATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* *
345610 GCTTTAATATCATGTATCCTTATTA
452 GCTTCAATATCGTGTATCCTTATTA
* * ** * *
345635 GAAGACTAAGTTTATGGTGCCTAATCCTTAGATTAATGGGGATTAGTATGACTATTCGTGTTTGT
1 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
*
345700 CTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGG
66 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
345738 CTGATCCTAT
Statistics
Matches: 5227, Mismatches: 884, Indels: 265
0.82 0.14 0.04
Matches are distributed among these distances:
456 1 0.00
457 120 0.02
458 119 0.02
459 1 0.00
460 2 0.00
461 1 0.00
462 206 0.04
463 318 0.06
464 7 0.00
465 3 0.00
466 3 0.00
467 91 0.02
468 295 0.06
469 6 0.00
470 17 0.00
471 501 0.10
472 13 0.00
473 14 0.00
474 621 0.12
475 563 0.11
476 1847 0.35
477 78 0.01
478 256 0.05
479 142 0.03
480 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACAC
CAAAGCGTCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAA
TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAT
GTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTT
CAATATCGTGTATCCTTATTA
Found at i:346134 original size:433 final size:431
Alignment explanation
Indices: 345309--346167 Score: 1132
Period size: 433 Copynumber: 2.0 Consensus size: 431
345299 AATATCATGT
*
345309 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
* * * ** * * *
345374 TAATGCTTTCCTTATTTAGGGACAAACTTTAATTTTATGGAAAATGGGGCAACGAAAAGATTTCC
66 CAACGCTTGCCTTATTTAGGGACAAACTTTAATACTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
345439 ATGCAAAAGAGAAACATCAATATCATTTATCCTAATGACAAGAATATGTTTATAGTGCCTAATCG
131 AAGCAAAACAGAAACATCAATATCATTTATCCTAATGACAAGAATATGTTTATAGTGACTAATCA
* * * * *
345504 CAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTCACAGTTGAGGCACGAACTTAGGCTTT
196 CAAAACAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTT
* * * * * *
345569 ACAAAAATTGGTAGGAAGAATGCCTTTCTTACGAAACCAATGCTTTAATATCATGTATCCTTATT
261 ACAAAAATTGG-AGGAAAAAGGCCTTTCTTACGAAACCAAAGCTTCAATATCATATATCCTTATG
* ** * ** * * *
345634 AGAAGACTAAGTTTATGGTGCCTAATCCTTAGATTAATGGGGATTAGTATGACTATTCGTGTTTG
325 AGAAGACTAAGTTTATCGTGCCTAATCCGAAAAAGAATGGGCATTAGTATGACTATTCATATTTG
** *
345699 TCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGCTG
390 TCTTATTTAAAAGACAAACTTTGATTCAATCAAAAACGGCTG
* * *
345741 ATCCTATTGAATGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGATTGTTACGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
** *
345806 CAACGCTTGCCTTATTTAAGGGATGAACTTTGATACTAAGGAAAATAGGGCAAAGAAAAGATTTC
66 CAACGCTTGCCTTATTT-AGGGACAAACTTTAATACTAAGGAAAATAGGGCAAAGAAAAGATTTC
** * *
345871 CAAGCAAAACA-AAATCAAT-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGAGTAA
130 CAAGCAAAACAGAAA-C-ATCAATATCATTTATCCTAATGACAAGAATATGTTTATAGTGACTAA
* * * **
345934 TCATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCATGAGTTTAGAC
193 TCACAAAACAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGAC
*
345999 TTTGAC-AAAATTTGAGGGAAAAAGGCCTTTCTTACGAAACCAAAGCTTCAATATCATATATCCT
258 TTT-ACAAAAATTGGA-GGAAAAAGGCCTTTCTTACGAAACCAAAGCTTCAATATCATATATCCT
* * *
346063 TATGGGAAGACTAAGTTTATCGTGCCTATTCCGAAAAAGAA-GGGACATTAGTATGACTATTTAT
321 TATGAGAAGACTAAGTTTATCGTGCCTAATCCGAAAAAGAATGGG-CATTAGTATGACTATTCAT
346127 ATTTGTCTTATTTAAAAGACAAACTTTGATTCAATCAAAAA
385 ATTTGTCTTATTTAAAAGACAAACTTTGATTCAATCAAAAA
346168 TAGTTGAAAG
Statistics
Matches: 366, Mismatches: 55, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
432 82 0.22
433 280 0.77
434 4 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (431 bp):
ATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
CAACGCTTGCCTTATTTAGGGACAAACTTTAATACTAAGGAAAATAGGGCAAAGAAAAGATTTCC
AAGCAAAACAGAAACATCAATATCATTTATCCTAATGACAAGAATATGTTTATAGTGACTAATCA
CAAAACAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTT
ACAAAAATTGGAGGAAAAAGGCCTTTCTTACGAAACCAAAGCTTCAATATCATATATCCTTATGA
GAAGACTAAGTTTATCGTGCCTAATCCGAAAAAGAATGGGCATTAGTATGACTATTCATATTTGT
CTTATTTAAAAGACAAACTTTGATTCAATCAAAAACGGCTG
Found at i:346651 original size:475 final size:476
Alignment explanation
Indices: 345741--348248 Score: 2839
Period size: 475 Copynumber: 5.3 Consensus size: 476
345731 AAAACGGCTG
* * * * *
345741 ATCCTATTGAATGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGATTGTTACGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAAT
* * **
345806 CAACGCTTGCCTTATTTAAGGGATGAACTTTGATACTAAGGAAAATAGGGCAAAGAAAAGATTTC
66 CAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * * **
345871 CAAGCAAAACAAAATCAAT-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGAGTAAT
131 CATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAAT
* ** * * **
345935 CATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCATGAGTTTAGACT
195 CACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACT
* * * *
346000 TTGAC-AAAATTTGAGGGAA-AAAGGCCTTTCTTACGAAACCAAAGCTTCAATATCATATATCCT
260 TT-ACAAAAATTGGTGGGAAGAAA-GCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCT
* * * * * *
346063 TATGGGAAGACTAAGTTTATCGTGCCTATTCCGAAAAAGAA-GGGACATTAGTATGACTATTTAT
323 TATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGG-GATTAGTATGACTATTCAT
* * * * * *
346127 ATTTGTCTTATTTAAAAGACAAACTTTGATTCAATCAAAAATAGTTGAAAGAAATGCTTTTCTTG
387 GTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTTG
*
346192 CGACACCAAAGCATCAATGTCATGT
452 CGACACCAAAGCGTCAATGTCATGT
* * *
346217 ATCCTAATGAAAGAAATGTGTTTTTTGTGCCCAATCATGAAAAAAACT-GAGACTATTACGAGAA
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAAAA-TGGAGACTGTTACGAGAA
* * * *
346281 TTAATGCTT-CTCTTATTTAAGGGATGAACTTTAATTTTATGGAAAATAGGGCGACGAAAAG-TT
65 TCAATGCTTGC-CTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
346344 TCCATGTAAAAGATAAA-CATCAGA-ATCATTTATCTTAATAAGTAGAATATGTTTATCGTGCCT
129 TCCATGCAAAAGA-AAATCATCA-ATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
* * * *
346407 AATCACAATGTGAATGAGGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAG
192 AATCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAG
* * *
346472 GCTTTACAAAAATTGGTGGGAAGAAAGCCTGTT-TTATGAAACCAATGCTTCAATATCGTGTATC
257 ACTTTACAAAAATTGGTGGGAAGAAAGCCT-TTCTTACGAAACCAAAGCTTCAATATCGTGTATC
* * * * *
346536 TTTATTAAAAAACTAAGTTTATGGTGCCTAATCCTAAAAAAAATGGGGATTAGTATGACTATTCA
321 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCA
* * * * *
346601 TGTTTGTCTTATTTAGGAGATAAATTTTGATTCTATTAAAAACGGTTGAAAGAAATGCTTTTC-T
386 TGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTT
* *
346665 GTTGACACTAAAGCGTCAATGTCATGT
451 G-CGACACCAAAGCGTCAATGTCATGT
* * * * * * ** *
346692 CT-CTTATTAAATGAAATGTGTTTTTGGTTCCTATTGATGAAAGGAATGGAGACTGTTACAAGAA
1 ATCCTAATGAAA-GAAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAA
* * * *
346756 TCAGTGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCGAAGAAATGATTT
65 TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * **
346821 CCAAGCAAAAGAAAATCAAT-AATAGCATTTATCCTAATAAGGAGAATGTGTTTATAATGAGTAA
130 CCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAA
* ** * * *
346885 TCATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGGCATAATTGAGGCACGAACTTAGAC
194 TCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGAC
* * * * *
346950 TTTA-ACAAAATTTGAGGGAAGAAAGCCTTTCTTACGAAACCAAAACTTCAATATCGTATATCTT
259 TTTACA-AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCT
* * * * * *
347014 TATGGGAAGACTAAGTTTATGGTGCCTATTCCTCAAAAGAAT-GGTATTAGTTTTACTATTCATG
323 TATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATG
* * * *
347078 TTTGTCTTATTTAAAAGATAAACTTTGATTCAATC-AAAA-A--TGGATGAAA------------
388 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTTGC
*
347127 G--A--AATGC-TCAATGTCATGT
453 GACACCAAAGCGTCAATGTCATGT
* * * * * * *
347146 ATCCTAGTGAAAGGAATGTGTTTTTGGTGCCTAGTCATGAAAAAAAAGGAGATTGTTACGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAAT
* *
347211 CAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAACA-AAAAGATTT
66 CAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAA-AGAAAAGATTT
* * * *
347275 CCATGCAAAAGAAAA-AATCAATATCATTTATCCTAATGAGGAGAATATGTTTAGAGTGCCTAAT
130 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * *
347339 TACAAAATGAATGAAGATCATTACTAAAATCCATGTTTTTCACAATTGAGGCATGAACTTGGGCT
195 CACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACT
* * * * *
347404 TTGCAAAAGTTGGTGGGAA-AAATGCCTTTCTTACAAAACCAATGCTTCAATATCATGTATCCTT
260 TTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTT
* * * * * * *
347468 ATTAGAAGACTATGTTTATGGTGCCCAATCCTGAAAAGAGTGGGGATCAGTATGACTATTCGTGT
324 ATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
* ** * * * * *
347533 TTGTCTTATTTGAGAGGCAAACTTTGATTCTATCAAAATCAACAGAAAAAAATGCTTTTCTTGTG
389 TTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTTGCG
347598 ACACCAAAGCGTCAATGTCATGT
454 ACACCAAAGCGTCAATGTCATGT
* *
347621 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAAT
* * * * *
347686 TAATGCTTTCCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATGGGGCAAAGAAAAGATTTC
66 CAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * * * ** * * *
347751 CTTGTAAAAGAAAATGATCAATATCATTTATCCTAACAAATAGAATGTGATTGTAGTGCCTAATT
131 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATC
* * ** * * * * *
347816 AGAAAATGAATGAAGATCATTACTGGAATCTATGTTTGTCCCAATTAAGGAACGAACATAGACTT
196 ACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
* * * * *
347881 TACAAAAATTGTTGGGAAGAAAGCCTTGCTTATGAAACAAAAGCATCAATATCGTGTATCCTTAT
261 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTAT
* * * *
347946 GAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAGGAATAGGGATTAATATGACTATTTATGTTT
326 GAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTT
* *
348011 GTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAAAAATACTTTTCTTGCGAC
391 GTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTTGCGAC
* *
348076 CCCAAAGCGTTAATGTCATGT
456 ACCAAAGCGTCAATGTCATGT
* * * * *
348097 ATCCTAATGAAAGGAATGTGTTTTTGCTTCCCAATCATG-AAAAAATGAAGATTATTACGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAAT
* * *
348161 CAATACTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGG-AATGAAAATATTTC
66 CAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
*
348225 CATGCAAAAGAAAAACATCAATAT
131 CATGCAAAAGAAAATCATCAATAT
348249 TGTCGCAACG
Statistics
Matches: 1690, Mismatches: 293, Indels: 100
0.81 0.14 0.05
Matches are distributed among these distances:
452 5 0.00
453 173 0.10
454 175 0.10
455 14 0.01
456 1 0.00
457 1 0.00
458 5 0.00
459 1 0.00
470 1 0.00
471 7 0.00
472 1 0.00
474 55 0.03
475 625 0.37
476 620 0.37
477 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAAT
CAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATC
ACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTAT
GAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTT
GTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTTGCGAC
ACCAAAGCGTCAATGTCATGT
Found at i:347643 original size:929 final size:931
Alignment explanation
Indices: 345741--348248 Score: 3043
Period size: 929 Copynumber: 2.7 Consensus size: 931
345731 AAAACGGCTG
* * *
345741 ATCCTATTGAATGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGATTGTTACGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
* **
345806 CAACGCTTGCCTTATTTAAGGGATGAACTTTGATACTAAGGAAAATAGGGCAAAGAAAAGATTTC
66 CAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* *
345871 CAAGCAAAACAAAATCAATAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGAGTAATC
131 CAAGCAAAAGAAAATCAATAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGAGTAATC
* **
345936 ATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCATGAGTTTAGACTT
196 ATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
* *
346001 TGACAAAATTTGAGGGAA-AAAGGCCTTTCTTACGAAACCAAAGCTTCAATATCATATATCCTTA
261 T-ACAAAATTTGAGGGAAGAAA-GCCTTTCTTACGAAACCAAAACTTCAATATCGTATATCCTTA
* * * *
346065 TGGGAAGACTAAGTTTATCGTGCCTATTCCGAAAAAGAAGGGACATTAGTATGACTATTTATATT
324 TGGGAAGACTAAGTTTATGGTGCCTATTCC-TAAAAGAATGG-CATTAGTATGACTATTTATGTT
*
346130 TGTCTTATTTAAAAGACAAACTTTGATTCAATCAAAAATAGTTGAAAGAAATGCTTTTCTTGCGA
387 TGTCTTATTTAAAAGATAAACTTTGATTCAATCAAAAAT-G-TG-AAGAAA---------T--G-
* *
346195 CACCAAAGCATCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTTGTGCCCAATCATGAAAA
437 -A-CAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTGCCCAATCATGAAAA
** * * *
346260 AAACTGAGACTATTACGAGAATTAATGCTT-CTCTTATTTAAGGGATGAACTTTAATTTTATGGA
500 AAAAGGAGATTATTACGAGAATCAATGCTTGCT-TTATTTAAGGGATGAACTTTAATTTTAAGGA
* * * * * *
346324 AAATAGGGCGACGAAAAG-TTTCCATGTAAAAGATAAACATCAGA-ATCATTTATCTTAATAAGT
564 AAATAAGGCAACGAAAAGATTTCCATGCAAAAGA-AAAAATCA-ATATCATTTATCCTAATAAGG
** ** * *
346387 AGAATATGTTTATCGTGCCTAATCACAATGTGAATGAGGATCATTACTAGAATCCATGTTTGTCA
627 AGAATATGTTTAGAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCA
**
346452 CAATTGAGGCACGAACATAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTGTTTTATGAAACCAA
692 CAATTGAGGCACGAACATAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTGTTTTACAAAACCAA
* * *
346517 TGCTTCAATATCGTGTATCTTTATTAAAAAACTAAGTTTATGGTGCCTAATCCTAAAAAAAATGG
757 TGCTTCAATATCATGTATCCTTATTAAAAAACTAAGTTTATGGTGCCCAATCCTAAAAAAAATGG
* * * * ***
346582 GGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGATAAATTTTGATTCTATTAAAAACGGT
822 GGATCAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACAAC
* * *
346647 TGAAAGAAATGCTTTTCTGTTGACACTAAAGCGTCAATGTCATGT
887 AGAAAAAAATGCTTTTCTGTTGACACCAAAGCGTCAATGTCATGT
* * * * * * *
346692 CT-CTTATTAAATGAAATGTGTTTTTGGTTCCTATTGATGAAAGGAATGGAGACTGTTACAAGAA
1 ATCCTAATGAAA-GAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAA
* * *
346756 TCAGTGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCGAAGAAATGATTT
65 TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* *
346821 CCAAGCAAAAGAAAATCAATAATAGCATTTATCCTAATAAGGAGAATGTGTTTATAATGAGTAAT
130 CCAAGCAAAAGAAAATCAATAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGAGTAAT
* *
346886 CATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGGCATAATTGAGGCACGAACTTAGACT
195 CATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACT
*
346951 TTAACAAAATTTGAGGGAAGAAAGCCTTTCTTACGAAACCAAAACTTCAATATCGTATATCTTTA
260 TT-ACAAAATTTGAGGGAAGAAAGCCTTTCTTACGAAACCAAAACTTCAATATCGTATATCCTTA
* * * *
347016 TGGGAAGACTAAGTTTATGGTGCCTATTCCTCAAAAGAATGGTATTAGTTTTACTATTCATGTTT
324 TGGGAAGACTAAGTTTATGGTGCCTATTCCT-AAAAGAATGGCATTAGTATGACTATTTATGTTT
* *
347081 GTCTTATTTAAAAGATAAACTTTGATTCAATCAAAAATG-GATGAAA-GA-AATGC-TCAATGTC
388 GTCTTATTTAAAAGATAAACTTTGATTCAATCAAAAATGTGAAGAAATGACAAAGCATCAATGTC
* * * *
347142 ATGTATCCTAGTGAAAGGAATGTGTTTTTGGTGCCTAGTCATGAAAAAAAAGGAGATTGTTACGA
453 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTGCCCAATCATGAAAAAAAAGGAGATTATTACGA
*
347207 GAATCAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAACAAAAAGA
518 GAATCAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAACGAAAAGA
*
347272 TTTCCATGCAAAAGAAAAAATCAATATCATTTATCCTAATGAGGAGAATATGTTTAGAGTGCCTA
583 TTTCCATGCAAAAGAAAAAATCAATATCATTTATCCTAATAAGGAGAATATGTTTAGAGTGCCTA
* * * * *
347337 ATTACAAAATGAATGAAGATCATTACTAAAATCCATGTTTTTCACAATTGAGGCATGAACTTGGG
648 ATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACATAGG
* *
347402 CTTTGCAAAAGTTGGTGGGAA-AAATGCCT-TTCTTACAAAACCAATGCTTCAATATCATGTATC
713 CTTTACAAAAATTGGTGGGAAGAAA-GCCTGTT-TTACAAAACCAATGCTTCAATATCATGTATC
* * * * * * *
347465 CTTATTAGAAGACTATGTTTATGGTGCCCAATCCTGAAAAGAGTGGGGATCAGTATGACTATTCG
776 CTTATTAAAAAACTAAGTTTATGGTGCCCAATCCTAAAAAAAATGGGGATCAGTATGACTATTCA
* *
347530 TGTTTGTCTTATTT-GAGAGGCAAACTTTGATTCTATCAAAATCAACAGAAAAAAATGCTTTTCT
841 TGTTTGTCTTATTTAG-GAGACAAACTTTGATTCTATCAAAAACAACAGAAAAAAATGCTTTTCT
347594 -TGTGACACCAAAGCGTCAATGTCATGT
905 GT-TGACACCAAAGCGTCAATGTCATGT
* *
347621 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAAT
1 ATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
* * * * * *
347686 TAATGCTTTCCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATGGGGCAAAGAAAAGATTTC
66 CAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
** * * * ** * * **
347751 CTTGTAAAAGAAAAT-GATCAATATCATTTATCCTAACAAATAGAATGTGATTGTAGTGCCTAAT
131 CAAGCAAAAGAAAATCAAT-AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGAGTAAT
* * *** * ** * * * * *
347815 TAGAAAATGAATGAAGATCATTACTGGAATCTATGTTTGTCCCAATTAAGGAACGAACATAGACT
195 CATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACT
* * * * * *
347880 TTACAAAAATTGTTGGGAAGAAAGCCTTGCTTATGAAA-CAAAAGCATCAATATCGTGTATCCTT
260 TTACAAAATTTG-AGGGAAGAAAGCCTTTCTTACGAAACCAAAA-CTTCAATATCGTATATCCTT
* * * *
347944 ATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAGGAATAGGGATTAATATGACTATTTATGT
323 ATGGGAAGACTAAGTTTATGGTGCCTATTCCTAAAA-GAAT-GGCATTAGTATGACTATTTATGT
* * * *
348009 TTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAAAAATACTTTTCTTGCG
386 TTGTCTTATTTAAAAGATAAACTTTGATTCAATCAAAAA-TG-TG--AAGAA-A-------T--G
* * * *
348074 ACCCCAAAGCGTTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGCTTCCCAATCATG-AA
437 A---CAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTGCCCAATCATGAAA
* * * *
348138 AAAATGAAGATTATTACGAGAATCAATACTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGA
499 AAAAAGGAGATTATTACGAGAATCAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGA
* * *
348203 AAAT-AGGGAATGAAAATATTTCCATGCAAAAGAAAAACATCAATAT
564 AAATAAGGCAACGAAAAGATTTCCATGCAAAAGAAAAA-ATCAATAT
348249 TGTCGCAACG
Statistics
Matches: 1342, Mismatches: 177, Indels: 77
0.84 0.11 0.05
Matches are distributed among these distances:
928 28 0.02
929 677 0.50
930 82 0.06
931 1 0.00
932 1 0.00
933 1 0.00
934 1 0.00
935 3 0.00
936 1 0.00
946 7 0.01
947 1 0.00
949 30 0.02
950 138 0.10
951 368 0.27
952 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (931 bp):
ATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAAT
CAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CAAGCAAAAGAAAATCAATAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGAGTAATC
ATAAAGCAAATGAAGATAATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
TACAAAATTTGAGGGAAGAAAGCCTTTCTTACGAAACCAAAACTTCAATATCGTATATCCTTATG
GGAAGACTAAGTTTATGGTGCCTATTCCTAAAAGAATGGCATTAGTATGACTATTTATGTTTGTC
TTATTTAAAAGATAAACTTTGATTCAATCAAAAATGTGAAGAAATGACAAAGCATCAATGTCATG
TATCCTAATGAAAGGAATGTGTTTTTGGTGCCCAATCATGAAAAAAAAGGAGATTATTACGAGAA
TCAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAACGAAAAGATTT
CCATGCAAAAGAAAAAATCAATATCATTTATCCTAATAAGGAGAATATGTTTAGAGTGCCTAATC
ACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAACATAGGCTT
TACAAAAATTGGTGGGAAGAAAGCCTGTTTTACAAAACCAATGCTTCAATATCATGTATCCTTAT
TAAAAAACTAAGTTTATGGTGCCCAATCCTAAAAAAAATGGGGATCAGTATGACTATTCATGTTT
GTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACAACAGAAAAAAATGCTTTTCTGTTGAC
ACCAAAGCGTCAATGTCATGT
Found at i:348819 original size:61 final size:60
Alignment explanation
Indices: 348722--348848 Score: 175
Period size: 61 Copynumber: 2.1 Consensus size: 60
348712 AAAGATGATG
* * * *
348722 AAGATGGGAAGAGTGATAAGGTGCCAATATCCTGATTCACA-GTCAGCGATATTGGGCTTA
1 AAGATGGGAAAAATGATAAGGTGCCAATATCCTGATTCA-AGGCCAACGATATTGGGCTTA
**
348782 AAGATGGGAAAAATGATAAAGGTGCCAATATGTTGATTCAAGGCCAACGATATTGGGCTTA
1 AAGATGGGAAAAATGAT-AAGGTGCCAATATCCTGATTCAAGGCCAACGATATTGGGCTTA
348843 AAGATG
1 AAGATG
348849 TAAAGAATGA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
60 16 0.27
61 43 0.73
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (60 bp):
AAGATGGGAAAAATGATAAGGTGCCAATATCCTGATTCAAGGCCAACGATATTGGGCTTA
Found at i:348899 original size:52 final size:52
Alignment explanation
Indices: 348815--349001 Score: 216
Period size: 52 Copynumber: 3.6 Consensus size: 52
348805 GCCAATATGT
* * * *
348815 TGATTCAAGGCCAACGATATTGGGCTTAAAGATGTAAAGAATGACAATGTGC
1 TGATTCAAGGCCAGCGACATTAGACTTAAAGATGTAAAGAATGACAATGTGC
* * * * *
348867 TGATTCATGGTCAGCTACATTAGACTTGAAGATG-AGAAGAATGCCAATGTGC
1 TGATTCAAGGCCAGCGACATTAGACTTAAAGATGTA-AAGAATGACAATGTGC
* * *
348919 TGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAG-GTGCCAATATGC
1 TGATTCAAGGCCAGCGACATTAGACTTAAAGATG-TAAAGAATGACAATGTGC
* *
348971 TAATTCAAGGCCAGCGACATTGGACTTAAAG
1 TGATTCAAGGCCAGCGACATTAGACTTAAAG
349002 GTGCCAATGT
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
51 1 0.01
52 110 0.96
53 3 0.03
54 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (52 bp):
TGATTCAAGGCCAGCGACATTAGACTTAAAGATGTAAAGAATGACAATGTGC
Found at i:348991 original size:104 final size:99
Alignment explanation
Indices: 348803--349134 Score: 320
Period size: 104 Copynumber: 3.4 Consensus size: 99
348793 AATGATAAAG
* * * * * * *
348803 GTGCCAATATGTTGATTCAAGGCCAACGATATTGGGCTTAAAGATG-TAAAGAATGACAATGTGC
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAG-GTGCCAATGTGC
* * * *
348867 TGATTCATGGTCAGCTACATTAGACTTGAAGATGAGAA
65 TAATTCAAGGTCAGCAACATTGGACTT-AAGA--AGAA
* *
348905 GAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAGGTGCCAATATG
1 G--TGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAGGTGCCAATGTG
* *
348970 CTAATTCAAGGCCAGCGACATTGGACTT-A-AAG--
64 CTAATTCAAGGTCAGCAACATTGGACTTAAGAAGAA
* * ** *
349002 GTGCCAATGTGCTGATTCAAGGTCAGTAACGTTAGACTT-AA-A-GATAAAGGTGCCAATGTGCT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAGGTGCCAATGTGCT
* *
349064 AATTTAAGGTCAGCAACGTTGGACTTAAAGAAGAA
66 AATTCAAGGTCAGCAACATTGGACTT-AAGAAGAA
* *
349099 GGTGCCAATATGCTGATTTAAGGCCAGCGATATTAG
1 -GTGCCAATATGCTGATTCAAGGCCAGCGACATTAG
349135 GCTTGTGCCA
Statistics
Matches: 191, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
92 41 0.21
93 1 0.01
94 3 0.02
95 37 0.19
97 1 0.01
98 28 0.15
99 2 0.01
101 1 0.01
102 2 0.01
104 70 0.37
105 5 0.03
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (99 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAGGTGCCAATGTGCT
AATTCAAGGTCAGCAACATTGGACTTAAGAAGAA
Found at i:349020 original size:43 final size:43
Alignment explanation
Indices: 348954--349405 Score: 221
Period size: 43 Copynumber: 9.9 Consensus size: 43
348944 TTAAAGATGA
* * *
348954 TAAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * * *
348997 TAAAGGTGCCAATGTGCTGATTCAAGGTCAGTAACGTTAGACTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGAC-T
* * * *
349041 AAAGATAAAGGTGCCAATGTGCTAATTTAAGGTCAGCAACGTTGGACT
1 -----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * * *
349089 TAAAGAAGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTAGG-CT
1 T-----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATT-GGACT
* * * *
349138 T----GTGCCAATGGGCCGATTCAAGGCCAACAACATTGGTCTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGAC-T
* * *
349178 AAAAGATAACAAGGGTGCCAATATGCTGATTCAAGGCCAGTAATATTGGACT
1 ------T-A-AA-GGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * * * * *
349230 TAAAAGTACCAATGTACTGATTCAAGGCCAACGACATTGGGCT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
** * **
349273 TAAATTTGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGAC-T
* * * ** *
349317 AAAGATGACAAAGGCGCCAGTATGCTGATTCAAGGCCAGTGATATTGGACT
1 -----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
*
349368 TAAAGGTGCCAATGTGCTGATTCAAGGCTAGCAACATT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATT
349406 AGGCTTACAG
Statistics
Matches: 310, Mismatches: 62, Indels: 74
0.70 0.14 0.17
Matches are distributed among these distances:
38 2 0.01
39 27 0.09
40 1 0.00
43 130 0.42
44 4 0.01
45 1 0.00
46 3 0.01
48 2 0.01
49 72 0.23
50 2 0.01
51 1 0.00
52 35 0.11
53 30 0.10
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (43 bp):
TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
Found at i:349073 original size:49 final size:49
Alignment explanation
Indices: 348859--349126 Score: 217
Period size: 49 Copynumber: 5.5 Consensus size: 49
348849 TAAAGAATGA
* * * * * *
348859 CAATGTGCTGATTCATGGTCAGCTACATTAGACTTGAAGATGAGAAGAATGC
1 CAATGTGCTGATTTAAGGTCAGCAACGTTAGACTTAAAGAT-A-AAG-GTGC
* * * *
348911 CAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAGGTGC
1 CAATGTGCTGATTTAAGGTCAGCAACGTTAGACTT-AA-A-GATAAAGGTGC
* * * * * * *
348963 CAATATGCTAATTCAAGGCCAGCGACATTGGAC-T-----TAAAGGTGC
1 CAATGTGCTGATTTAAGGTCAGCAACGTTAGACTTAAAGATAAAGGTGC
* *
349006 CAATGTGCTGATTCAAGGTCAGTAACGTTAGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTTAAGGTCAGCAACGTTAGACTTAAAGATAAAGGTGC
* *
349055 CAATGTGCTAATTTAAGGTCAGCAACGTTGGACTTAAAGA-AGAAGGTGC
1 CAATGTGCTGATTTAAGGTCAGCAACGTTAGACTTAAAGATA-AAGGTGC
* *
349104 CAATATGCTGATTTAAGGCCAGC
1 CAATGTGCTGATTTAAGGTCAGC
349127 GATATTAGGC
Statistics
Matches: 184, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
43 35 0.19
44 1 0.01
48 1 0.01
49 72 0.39
51 1 0.01
52 65 0.35
53 4 0.02
54 2 0.01
55 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTTAAGGTCAGCAACGTTAGACTTAAAGATAAAGGTGC
Found at i:349093 original size:92 final size:95
Alignment explanation
Indices: 348908--349558 Score: 381
Period size: 95 Copynumber: 7.0 Consensus size: 95
348898 ATGAGAAGAA
*
348908 TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
*
348973 ATTCAAGGCCAGCGACATTGGACTTAAAGG
66 ATTCAAGGCCAGCAACATTGGACTTAAAGG
* * * *
349003 TGCCAATGTGCTGATTCAAGGTCAGTAACGTTAGACTT-AA-A-GATAAAGGTGCCAATGTGCTA
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
* * *
349065 ATTTAAGGTCAGCAACGTTGGACTTAAAGAAGAAGG
66 ATTCAAGGCCAGCAACATTGGACTT-----A-AAGG
* * * * * ** *
349101 TGCCAATATGCTGATTTAAGGCCAGCGATATTAGGCTT---G-TGCCAATGG-GCC-----G---
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
* *
349153 ATTCAAGGCCAACAACATTGGTCTTAAAAGATAACAAGGG
66 ATTCAAGGCCAGCAACATTGGAC-T------T-A-AA-GG
* * * * * * *
349193 TGCCAATATGCTGATTCAAGGCCAGTAATATTGGACTTAAA-A-G-T--A----CCAATGTACTG
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
* * * **
349249 ATTCAAGGCCAACGACATTGGGCTTAAATT
66 ATTCAAGGCCAGCAACATTGGACTTAAAGG
* ** * * * * *
349279 TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTAAAGATGACAAAGGCGCCAGTATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
** *
349344 ATTCAAGGCCAGTGATATTGGACTTAAAGG
66 ATTCAAGGCCAGCAACATTGGACTTAAAGG
* * * * **
349374 TGCCAATGTGCTGATTCAAGGCTAGCAACATTAGGCTTACAGAT-AGGAAAGGTGCCAATACACT
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGA-TAAAGGTGCCAATATGCT
* * * * * *
349438 GATTCAAGGCTAGCTATATTGAACTTAATGG
65 AATTCAAGGCCAGCAACATTGGACTTAAAGG
* * * * * *
349469 TGCCAA--T--AGATTTAAGGCCAGCGACATTGGAATTAAAGATGATAAAGGTGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
* *
349530 ATTTAAGGCCAGCAATATTGGACTTAAAG
66 ATTCAAGGCCAGCAACATTGGACTTAAAG
349559 ATGAAAAAGT
Statistics
Matches: 432, Mismatches: 85, Indels: 82
0.72 0.14 0.14
Matches are distributed among these distances:
86 37 0.09
87 3 0.01
88 22 0.05
89 2 0.00
91 71 0.16
92 77 0.18
93 2 0.00
94 4 0.01
95 150 0.35
96 24 0.06
97 6 0.01
98 34 0.08
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (95 bp):
TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCTA
ATTCAAGGCCAGCAACATTGGACTTAAAGG
Found at i:349195 original size:141 final size:140
Alignment explanation
Indices: 348883--349233 Score: 359
Period size: 141 Copynumber: 2.5 Consensus size: 140
348873 ATGGTCAGCT
* * * *
348883 ACATTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAA
1 ACATTAGACTTAAAGAT-A-AAG-GTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAA
*
348948 AGATGATAAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATGTG
63 AGA-GATAAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACTT--A-GTGCCAATGGG
* * **
349013 CTGATTCAAGGTCAGTA
124 CCGATTCAAGGCCAACA
* * * * *
349030 ACGTTAGACTTAAAGATAAAGGTGCCAATGTGCTAATTTAAGGTCAGCAACGTTGGACTTAAAGA
1 ACATTAGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGA
* * * *
349095 -A-GAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTAGG-CTT-GTGCCAATGGGCCGATT
66 GATAAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATT-GGACTTAGTGCCAATGGGCCGATT
349156 CAAGGCCAACA
130 CAAGGCCAACA
* * * * *
349167 ACATTGGTCTTAAAAGATAACAAGGGTGCCAATATGCTGATTCAAGGCCAGTAATATTGGACTTA
1 ACATTAGACTT-AAAGAT-A-AA-GGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTA
349232 AA
62 AA
349234 AGTACCAATG
Statistics
Matches: 171, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
137 31 0.18
138 6 0.04
139 1 0.01
140 2 0.01
141 72 0.42
142 3 0.02
144 37 0.22
145 3 0.02
146 1 0.01
147 15 0.09
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (140 bp):
ACATTAGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGA
GATAAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAGTGCCAATGGGCCGATTC
AAGGCCAACA
Found at i:349405 original size:138 final size:137
Alignment explanation
Indices: 348954--349412 Score: 464
Period size: 138 Copynumber: 3.3 Consensus size: 137
348944 TTAAAGATGA
* *
348954 TAAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATT-GGACTTAAAGGTGCCAATGTGCTGAT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGG-CTTAAATGTGCCAATGTGCTGAT
* * * * * * * * *
349018 TCAAGGTCAGTAACGTTAGACTTAAAGAT--AAAGGTGCCAATGTGCTAATTTAAGGTCAGCAAC
65 TCAAGGCCAGTAACATTGGACTTAAAGATACAAAGGTGCCAATATGCTGATTCAAGGCCAGTAAT
*
349081 GTTGGACT
130 ATTGGACT
* * *
349089 TAAAGAAGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTAGGC-T---TGTGCCAATGGG
1 T-----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGGCTTAAATGTGCCAATGTG
* ** * *
349150 CCGATTCAAGGCCAACAACATTGGTCTTAAAAGATAACAAGGGTGCCAATATGCTGATTCAAGGC
60 CTGATTCAAGGCCAGTAACATTGGACTT-AAAGAT-ACAAAGGTGCCAATATGCTGATTCAAGGC
349215 CAGTAATATTGGACT
123 CAGTAATATTGGACT
* * * * * * * *
349230 TAAAAGTACCAATGTACTGATTCAAGGCCAACGACATTGGGCTTAAATTTGCCAATGTGCTAATT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGGCTTAAATGTGCCAATGTGCTGATT
* * * *
349295 CAAGGCCAGTGACATTGGACTTAAAGATGACAAAGGCGCCAGTATGCTGATTCAAGGCCAGTGAT
66 CAAGGCCAGTAACATTGGACTTAAAGAT-ACAAAGGTGCCAATATGCTGATTCAAGGCCAGTAAT
349360 ATTGGACT
130 ATTGGACT
* * *
349368 TAAAGGTGCCAATGTGCTGATTCAAGGCTAGCAACATTAGGCTTA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGGCTTA
349413 CAGATAGGAA
Statistics
Matches: 261, Mismatches: 48, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
135 33 0.13
136 2 0.01
137 31 0.12
138 90 0.34
139 32 0.12
140 2 0.01
141 69 0.26
142 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (137 bp):
TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGGCTTAAATGTGCCAATGTGCTGATT
CAAGGCCAGTAACATTGGACTTAAAGATACAAAGGTGCCAATATGCTGATTCAAGGCCAGTAATA
TTGGACT
Found at i:349632 original size:26 final size:26
Alignment explanation
Indices: 349596--349736 Score: 84
Period size: 27 Copynumber: 5.0 Consensus size: 26
349586 TTTGAACAGG
*
349596 AAAAAGTGCCACAGAGTTGTGGACTT
1 AAAAGGTGCCACAGAGTTGTGGACTT
* *
349622 AAAAGGTGCCATAGAGTTGTGGGCTCT
1 AAAAGGTGCCACAGAGTTGTGGACT-T
* * * *
349649 GAAAAGAAAAAGGTGCTACGGAGTTGTGGGCAAT
1 -------AAAAGGTGCCACAGAGTTGTGGAC-TT
*
349683 AAAAGGGTGCCACAGAGTTGTGCACTT
1 AAAA-GGTGCCACAGAGTTGTGGACTT
* **
349710 AAAAGGGTGCCACGGAGTCATGGACTT
1 AAAA-GGTGCCACAGAGTTGTGGACTT
349737 GGAAGCCATG
Statistics
Matches: 89, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
26 22 0.25
27 29 0.33
28 16 0.18
34 22 0.25
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (26 bp):
AAAAGGTGCCACAGAGTTGTGGACTT
Found at i:349673 original size:60 final size:62
Alignment explanation
Indices: 349567--349704 Score: 174
Period size: 60 Copynumber: 2.3 Consensus size: 62
349557 AGATGAAAAA
* * * *
349567 GTGCCACCGAGTTGTGGGCTTTGAACAGGAAAAAGTGCCACAGAGTTGTGGAC-TTAAAA-G
1 GTGCCACAGAGTTGTGGGCTCTGAACAAGAAAAAGTGCCACAGAGTTGTGGACAATAAAAGG
* * * *
349627 GTGCCATAGAGTTGTGGGCTCTGAA-AAGAAAAAGGTGCTACGGAGTTGTGGGCAATAAAAGG
1 GTGCCACAGAGTTGTGGGCTCTGAACAAGAAAAA-GTGCCACAGAGTTGTGGACAATAAAAGG
349689 GTGCCACAGAGTTGTG
1 GTGCCACAGAGTTGTG
349705 CACTTAAAAG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
59 7 0.11
60 38 0.58
61 5 0.08
62 16 0.24
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (62 bp):
GTGCCACAGAGTTGTGGGCTCTGAACAAGAAAAAGTGCCACAGAGTTGTGGACAATAAAAGG
Found at i:349700 original size:28 final size:27
Alignment explanation
Indices: 349655--349727 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
349645 CTCTGAAAAG
* *
349655 AAAAAGGTGCTACGGAGTTGTGGGCA-AT
1 AAAAGGGTGCCACGGAGTTGT--GCACAT
* *
349683 AAAAGGGTGCCACAGAGTTGTGCACTT
1 AAAAGGGTGCCACGGAGTTGTGCACAT
349710 AAAAGGGTGCCACGGAGT
1 AAAAGGGTGCCACGGAGT
349728 CATGGACTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.08
27 18 0.46
28 18 0.46
ACGTcount: A:0.32, C:0.15, G:0.34, T:0.19
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGCACAT
Found at i:349862 original size:33 final size:33
Alignment explanation
Indices: 349762--350004 Score: 216
Period size: 33 Copynumber: 7.5 Consensus size: 33
349752 GAGATGCCAT
* * *
349762 TGAGTCGTGGACTTGGAAGAAAAAGGATGCCAT
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCTAC
* * * * * *
349795 TAAGTCATGGA-TTTGCAG-AAGA-GATGCCAT
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCTAC
* *
349825 TGAGTCATGGACTTAGAAGCAAAAGGATGCTAC
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCTAC
349858 TGAGTCATGGACTTGGAAGAAAAAGGATG-TCAC
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCT-AC
*
349891 TGAGTCATGGACTTGGAAGAAAAAAGATG-TCAC
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCT-AC
* * * *
349924 TGAGTCGTGGACTTGGAAAAAAAAGGAT-TTCAT
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCT-AC
* * *
349957 TGAGTCGTGGACTTGG-AGAAGAA--ATGCCAC
1 TGAGTCATGGACTTGGAAGAAAAAGGATGCTAC
*
349987 TGGGTCATGGACTTGGAA
1 TGAGTCATGGACTTGGAA
350005 AGAGATTTGA
Statistics
Matches: 178, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
30 35 0.20
31 9 0.05
32 14 0.08
33 120 0.67
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (33 bp):
TGAGTCATGGACTTGGAAGAAAAAGGATGCTAC
Found at i:349926 original size:66 final size:66
Alignment explanation
Indices: 349717--350004 Score: 273
Period size: 66 Copynumber: 4.4 Consensus size: 66
349707 CTTAAAAGGG
* * * *
349717 TGCCACGGAGTCATGGACTTGGAAGCCATGGAGAAGAGATGCCATTGAGTCGTGGACTTGGAAGA
1 TGCCACTGAGTCATGGACTTGGAAG--A---AAAAG-GATGTCATTGAGTCATGGACTTGGAAGA
*
349782 AAAAGGA
60 AAAAAGA
* * * * * * * * *
349789 TGCCATTAAGTCATGGA-TTTGCAG-AAGA-GATGCCATTGAGTCATGGACTTAGAAGCAAAAGG
1 TGCCACTGAGTCATGGACTTGGAAGAAAAAGGATGTCATTGAGTCATGGACTTGGAAGAAAAAAG
349851 A
66 A
* *
349852 TGCTACTGAGTCATGGACTTGGAAGAAAAAGGATGTCACTGAGTCATGGACTTGGAAGAAAAAAG
1 TGCCACTGAGTCATGGACTTGGAAGAAAAAGGATGTCATTGAGTCATGGACTTGGAAGAAAAAAG
349917 A
66 A
* * * * * *
349918 TGTCACTGAGTCGTGGACTTGGAAAAAAAAGGATTTCATTGAGTCGTGGACTTGG-AG-AAGAA-
1 TGCCACTGAGTCATGGACTTGGAAGAAAAAGGATGTCATTGAGTCATGGACTTGGAAGAAAAAAG
349980 A
66 A
*
349981 TGCCACTGGGTCATGGACTTGGAA
1 TGCCACTGAGTCATGGACTTGGAA
350005 AGAGATTTGA
Statistics
Matches: 181, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
63 68 0.38
64 9 0.05
65 7 0.04
66 78 0.43
71 5 0.03
72 14 0.08
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (66 bp):
TGCCACTGAGTCATGGACTTGGAAGAAAAAGGATGTCATTGAGTCATGGACTTGGAAGAAAAAAG
A
Found at i:351186 original size:9 final size:9
Alignment explanation
Indices: 351174--351242 Score: 59
Period size: 9 Copynumber: 7.2 Consensus size: 9
351164 TTTTTCCGCC
351174 TTTTTTGTT
1 TTTTTTGTT
**
351183 TTTTGCG-T
1 TTTTTTGTT
351191 TTTTTTGTT
1 TTTTTTGTT
351200 TTTTTTGTGT
1 TTTTTTGT-T
*
351210 TTTTTACTTTT
1 TTTTT--TGTT
351221 TTGTTTTGTT
1 TT-TTTTGTT
351231 TTTTTTGCTT
1 TTTTTTG-TT
351241 TT
1 TT
351243 GACTGTTTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
8 6 0.12
9 19 0.40
10 15 0.31
11 3 0.06
12 5 0.10
ACGTcount: A:0.01, C:0.04, G:0.13, T:0.81
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:351186 original size:18 final size:17
Alignment explanation
Indices: 351157--351203 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
351147 TTTTGTTCCC
*
351157 TTTTTGATTTTTCCGCCT
1 TTTTTGTTTTTTCCG-CT
* *
351175 TTTTTGTTTTTTGCGTT
1 TTTTTGTTTTTTCCGCT
351192 TTTTTGTTTTTT
1 TTTTTGTTTTTT
351204 TTGTGTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.02, C:0.11, G:0.13, T:0.74
Consensus pattern (17 bp):
TTTTTGTTTTTTCCGCT
Found at i:351212 original size:17 final size:17
Alignment explanation
Indices: 351175--351237 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 17
351165 TTTTCCGCCT
** *
351175 TTTTTGTTTTTTGCGTT
1 TTTTTGTTTTTTTTGTG
351192 TTTTTGTTTTTTTTGTG
1 TTTTTGTTTTTTTTGTG
**
351209 TTTTT-TACTTTTT-TG
1 TTTTTGTTTTTTTTGTG
351224 -TTTTGTTTTTTTTG
1 TTTTTGTTTTTTTTG
351238 CTTTTGACTG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
14 4 0.11
15 8 0.22
16 6 0.16
17 19 0.51
ACGTcount: A:0.02, C:0.03, G:0.14, T:0.81
Consensus pattern (17 bp):
TTTTTGTTTTTTTTGTG
Found at i:351220 original size:19 final size:19
Alignment explanation
Indices: 351181--351234 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
351171 GCCTTTTTTG
* **
351181 TTTTTTGCGTTTTTTTGTT
1 TTTTTTGTGTTTTTTACTT
351200 TTTTTTGTGTTTTTTACTT
1 TTTTTTGTGTTTTTTACTT
*
351219 TTTTGTTTTGTTTTTT
1 TTTT-TTGTGTTTTTT
351235 TTGCTTTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 20 0.67
20 10 0.33
ACGTcount: A:0.02, C:0.04, G:0.13, T:0.81
Consensus pattern (19 bp):
TTTTTTGTGTTTTTTACTT
Found at i:351220 original size:26 final size:26
Alignment explanation
Indices: 351174--351233 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 26
351164 TTTTTCCGCC
*
351174 TTTTTTGTTTTTTGCGTTTTTTTGTTT
1 TTTTTTGTTTTTTACG-TTTTTTGTTT
351201 TTTTTGTGTTTTTTAC-TTTTTTGTTT
1 TTTTT-TGTTTTTTACGTTTTTTGTTT
351227 TGTTTTT
1 T-TTTTT
351234 TTTGCTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 12 0.40
27 9 0.30
28 9 0.30
ACGTcount: A:0.02, C:0.03, G:0.13, T:0.82
Consensus pattern (26 bp):
TTTTTTGTTTTTTACGTTTTTTGTTT
Found at i:351234 original size:22 final size:21
Alignment explanation
Indices: 351176--351242 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 21
351166 TTTCCGCCTT
*
351176 TTTTGTTTTTTGCGTTTTTT--
1 TTTT-TTTTTTGTGTTTTTTAC
*
351196 TGTTTTTTTTGTGTTTTTTAC
1 TTTTTTTTTTGTGTTTTTTAC
* *
351217 TTTTTTGTTTTGTTTTTTTTGC
1 TTTTTT-TTTTGTGTTTTTTAC
351239 TTTT
1 TTTT
351243 GACTGTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
19 14 0.36
20 3 0.08
21 5 0.13
22 17 0.44
ACGTcount: A:0.01, C:0.04, G:0.13, T:0.81
Consensus pattern (21 bp):
TTTTTTTTTTGTGTTTTTTAC
Found at i:353968 original size:13 final size:13
Alignment explanation
Indices: 353950--353975 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
353940 TACACCAAGT
353950 ATGTATCGATACA
1 ATGTATCGATACA
353963 ATGTATCGATACA
1 ATGTATCGATACA
353976 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:353973 original size:32 final size:33
Alignment explanation
Indices: 353932--353995 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
353922 TAGCCAAACT
* **
353932 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
353964 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
353996 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:358060 original size:15 final size:15
Alignment explanation
Indices: 358040--358078 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
358030 TAAAAATGTC
*
358040 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
358055 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
358070 CCAAATGAA
1 CAAAATGAA
358079 ATTGATGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:360158 original size:13 final size:13
Alignment explanation
Indices: 360140--360178 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
360130 ACATTTTTCT
360140 TTGTATCGATACA
1 TTGTATCGATACA
360153 TTGTATCGATACA
1 TTGTATCGATACA
*
360166 CTGTATCGATACA
1 TTGTATCGATACA
360179 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:362744 original size:13 final size:13
Alignment explanation
Indices: 362726--362751 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
362716 TACACCAAGT
362726 ATGTATCGATACA
1 ATGTATCGATACA
362739 ATGTATCGATACA
1 ATGTATCGATACA
362752 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:362749 original size:32 final size:33
Alignment explanation
Indices: 362708--362771 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
362698 TAGCCAAACT
* **
362708 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
362740 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
362772 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:368284 original size:13 final size:13
Alignment explanation
Indices: 368266--368292 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
368256 TACAATGATT
368266 AATGTATCGATAC
1 AATGTATCGATAC
368279 AATGTATCGATAC
1 AATGTATCGATAC
368292 A
1 A
368293 TTTATTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:368286 original size:33 final size:33
Alignment explanation
Indices: 368247--368312 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
368237 AAAATCCTAG
368247 ATGTATCGATACAATGATTAATGTATCGATACA
1 ATGTATCGATACAATGATTAATGTATCGATACA
* *
368280 ATGTATCGATACATTTATTAATGTATCGATACA
1 ATGTATCGATACAATGATTAATGTATCGATACA
368313 TCTCCTTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACAATGATTAATGTATCGATACA
Found at i:369988 original size:16 final size:16
Alignment explanation
Indices: 369963--369994 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
369953 GATGAAAAGA
*
369963 ATTTTTTTATTATTTT
1 ATTTTGTTATTATTTT
369979 ATTTTGTTATTATTTT
1 ATTTTGTTATTATTTT
369995 TTATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (16 bp):
ATTTTGTTATTATTTT
Found at i:371716 original size:19 final size:18
Alignment explanation
Indices: 371688--371729 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
371678 ATTTTTTTTT
371688 ATTTTTTTATTTTAATTA
1 ATTTTTTTATTTTAATTA
**
371706 ATTTTTATTATTTTTTTTA
1 ATTTTT-TTATTTTAATTA
371725 ATTTT
1 ATTTT
371730 GGATTTCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTTTATTTTAATTA
Found at i:371723 original size:23 final size:24
Alignment explanation
Indices: 371683--371727 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
371673 TCATAATTTT
*
371683 TTTTTATTTTTTTATTTTAATTAA
1 TTTTTATTATTTTATTTTAATTAA
371707 TTTTTATTATTTT-TTTTAATT
1 TTTTTATTATTTTATTTTAATT
371728 TTGGATTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTATTATTTTATTTTAATTAA
Found at i:372278 original size:42 final size:42
Alignment explanation
Indices: 372232--373285 Score: 517
Period size: 42 Copynumber: 25.1 Consensus size: 42
372222 TAGATGAGGC
* *
372232 AGTCTTCAGGGTCTAAGCTGACAGGCAGACTAAGGGAAGGAA
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * *
372274 AGTCTCCAAGGTAAAAGTTGACAGGCAGACTAAGGGAAAGAA
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * **
372316 AGTC-TCTAAGGTCAAAGCCGACTGGAAGACTAATAGAAGGAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* ** *
372358 AGTC-TCTAGGGTCAAAGCCAACAGGCAGACTAAGGGTAGGAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* *
372400 AGT-GTCTAGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * * *
372442 AGTC-TCTAGAGTCAAAAAC-GATAGGTAGACTATGGGAAGGAA
1 AGTCTTCAAG-GTC-AAAGCTGACAGGCAGACTAAGGGAAGGAA
*
372484 AGTC-TCTAGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGG-AA
* * *** *
372527 AGTC-TCTAAGGTCAAAGCTGACAAGCAGACTTTATATAAGG-C
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGAC-TAAGGGAAGGAA
* ** * * * *
372569 AGTC-TCTAGGGTTGAAGCCGACAGGTAGACTAAGGGTAGAAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * *
372611 AGTCTCCAAGGTCAAAG-TCGACAGGTAGACTTTAGGTG-AGG-T
1 AGTCTTCAAGGTCAAAGCT-GACAGGCAGAC-TAAGG-GAAGGAA
* * * * *
372653 AGTC-TCTTAGGTTAAAGCCGACAGGCAGACTGAGGGTAA-AAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGG-AAGGAA
* * * * * ** * ** *
372695 AGTCTCCAAGGTTAGAGCCGATAGATAGACTTTAGATAAGG-T
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGAC-TAAGGGAAGGAA
** * ** *
372737 AGTC-TCTAAGGTCAAAGCTGACAAACAGACTTTAGATAAGG-C
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGAC-TAAGGGAAGGAA
* ** *
372779 AGTCTCCAAAATCAAAG-TCGACAGGCAGACTGAGGGATAGGAA
1 AGTCTTCAAGGTCAAAGCT-GACAGGCAGACTAAGGGA-AGGAA
* * * * * * *** *
372822 AGTCTCCAGGGTCAAAACTGACAAGTAAACTATAAATAA-GAC
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGACTA-AGGGAAGGAA
* ** *
372864 AGTC-TCTAGGGTCAAAGCCAACATGCAGACTGAA-GGAAGGAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACT-AAGGGAAGGAA
* * * *
372906 AGTCTCCACA-GTTAAAGCCGACAGGAAGACTAAGGGAAGGAA
1 AGTCTTCA-AGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* ** * * * *
372948 AGTC-CCCGGGTCAATG-TCGATAGGTAGACTAAAGGAAGGAA
1 AGTCTTCAAGGTCAAAGCT-GACAGGCAGACTAAGGGAAGGAA
* ** * *
372989 AGTC-TCTAGGGTCAAAGCCAACAGGTAGACTACGGGAAGGAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * ** * * *
373031 GGTCTCCAAAGTCAAAGCCAACATGCAGTCTAAGGGTAGGAA
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
*
373073 AGTCTTCAAGGTCAAAG-TCGATAGGCAGACTAAGGGAAGGAA
1 AGTCTTCAAGGTCAAAGCT-GACAGGCAGACTAAGGGAAGGAA
* *
373115 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTAAGGGAAGGAA
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * * * ** *
373157 AGTC-TCTAGGGTTAAAGCCGATAGGAAGACTAAGAAAAGAAA
1 AGTCTTC-AAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
* * * *
373199 AGTCTCCAAGGTCAAAG-TCGATAGGCAGACTAAGAGAAAGAA
1 AGTCTTCAAGGTCAAAGCT-GACAGGCAGACTAAGGGAAGGAA
* * * * * * *
373241 AGTCTCCATGGTCAAAGCCGATAAGCAGAATAAGGGGAGGAA
1 AGTCTTCAAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
373283 AGT
1 AGT
373286 ATCCAGAAGT
Statistics
Matches: 779, Mismatches: 187, Indels: 92
0.74 0.18 0.09
Matches are distributed among these distances:
40 1 0.00
41 59 0.08
42 634 0.81
43 75 0.10
44 10 0.01
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (42 bp):
AGTCTTCAAGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAA
Found at i:372348 original size:84 final size:84
Alignment explanation
Indices: 372239--373290 Score: 773
Period size: 84 Copynumber: 12.5 Consensus size: 84
372229 GGCAGTCTTC
* * * * **
372239 AGGGTCTAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTAAAAGTTGACAGGCAGAC
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
*
372304 TAAGGGAAAGAAAGTCTCT
66 TAAGGGAAGGAAAGTCTCT
* * ** * * *
372323 AAGGTCAAAGCCGACTGGAAGACTAATAGAAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCAGAC
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
* *
372388 TAAGGGTAGGAAAGTGTCT
66 TAAGGGAAGGAAAGTCTCT
* * * ** * *
372407 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCT-CTAGAGTCAAAAACGATAGGTAGA
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAG-GTCAAAGCCGACAGGCAGA
*
372471 CTATGGGAAGGAAAGTCTCT
65 CTAAGGGAAGGAAAGTCTCT
* * * * *
372491 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAAGTCTCTAAGGTCAAAGCTGACAAGCAGA
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGG-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGA
* *** *
372556 CTTTATATAAGG-CAGTCTCT
65 C-TAAGGGAAGGAAAGTCTCT
** * * * * *
372576 AGGGTTGAAGCCGACAGGTAGACTAAGGGTAGAAAAGTCTCCAAGGTCAAAGTCGACAGGTAGAC
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
* *
372641 TTTAGGTG-AGG-TAGTCTCTT
66 -TAAGG-GAAGGAAAGTCTC-T
* * * * * * * **
372661 A-GGTTAAAGCCGACAGGCAGACTGAGGGTAA-AAAAGTCTCCAAGGTTAGAGCCGATAGATAGA
1 AGGGTCAAAGCCGACAGGAAGACTAAGGG-AAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGA
* ** *
372724 CTTTAGATAAGG-TAGTCTCT
65 C-TAAGGGAAGGAAAGTCTCT
* * * * ** * ** *
372744 AAGGTCAAAGCTGACA-AACAGACTTTAGATAAGG-CAGTCTCCAAAATCAAAGTCGACAGGCAG
1 AGGGTCAAAGCCGACAGGA-AGAC-TAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAG
* *
372807 ACTGAGGGATAGGAAAGTCTCC
64 ACTAAGGGA-AGGAAAGTCTCT
* * * *** * * * * *
372829 AGGGTCAAAACTGACAAGTAA-ACTATAAATAA-GACAGTCTCTAGGGTCAAAGCCAACATGCAG
1 AGGGTCAAAGCCGAC-AGGAAGACTA-AGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAG
*
372892 ACTGAA-GGAAGGAAAGTCTCC
64 ACT-AAGGGAAGGAAAGTCTCT
** * ** * * * *
372913 ACAGTTAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTC-CCCGGGTCAATGTCGATAGGTAGAC
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
*
372977 TAAAGGAAGGAAAGTCTCT
66 TAAGGGAAGGAAAGTCTCT
* * * * * * * *
372996 AGGGTCAAAGCCAACAGGTAGACTACGGGAAGGAAGGTCTCCAAAGTCAAAGCCAACATGCAGTC
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
*
373061 TAAGGGTAGGAAAGTCT-T
66 TAAGGGAAGGAAAGTCTCT
* * * * * *
373079 CAAGGTCAAAGTCGATAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGA
1 -AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGA
373144 CTAAGGGAAGGAAAGTCTCT
65 CTAAGGGAAGGAAAGTCTCT
* * ** * * *
373164 AGGGTTAAAGCCGATAGGAAGACTAAGAAAAGAAAAGTCTCCAAGGTCAAAGTCGATAGGCAGAC
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
* * *
373229 TAAGAGAAAGAAAGTCTCC
66 TAAGGGAAGGAAAGTCTCT
* * * * * * *
373248 ATGGTCAAAGCCGATAAGCAGAATAAGGGGAGGAAAGTATCCA
1 AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCA
373291 GAAGTTTAAT
Statistics
Matches: 761, Mismatches: 182, Indels: 50
0.77 0.18 0.05
Matches are distributed among these distances:
82 2 0.00
83 79 0.10
84 553 0.73
85 116 0.15
86 10 0.01
87 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (84 bp):
AGGGTCAAAGCCGACAGGAAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
TAAGGGAAGGAAAGTCTCT
Found at i:372423 original size:126 final size:126
Alignment explanation
Indices: 372239--373290 Score: 738
Period size: 126 Copynumber: 8.3 Consensus size: 126
372229 GGCAGTCTTC
* * * **
372239 AGGGTCTAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTAAAAGTTGACAGGCAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
*
372304 TAAGGGAAAGAAAGTCTCTAAGGTCAAAGCCGACT-GGAAGACTAATAGAAGGAAAGTCTCT
66 TAAGGGAAAGAAAGTCTCCAAGGTCAAAGCCGA-TAGGAAGACTAATAGAAGGAAAGTCTCT
* * * * * *
372365 AGGGTCAAAGCCAACAGGCAGACTAAGGGTAGGAAAGTGTCTAGGGTCAAAGCTGACAGGCAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
* * ** * *
372430 TAAGGGAAGGAAAGTCT-CTAGAGTCAAAAACGATAGGTAGACT-ATGGGAAGGAAAGTCTCT
66 TAAGGGAAAGAAAGTCTCCAAG-GTCAAAGCCGATAGGAAGACTAAT-AGAAGGAAAGTCTCT
* * * *
372491 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAAGTCTCTAAGGTCAAAGCTGACAAGCAGA
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGG-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGA
* * ** * * ** * * ** * * *
372556 CTTTA--TATAAGGCAGTCTCTAGGGTTGAAGCCGACAGGTAGACTAAGGGTAGAAAAGTCTCC
65 C-TAAGGGA-AAGAAAGTCTCCAAGGTCAAAGCCGATAGGAAGACTAATAGAAGGAAAGTCTCT
* * * * * ** *
372618 AAGGTCAAAGTCGACAGGTAGACTTTAGGTG-AGG-TAGTCTCTTAGGTTAAAGCCGACAGGCAG
1 AGGGTCAAAGCCGACAGGCAGAC-TAAGG-GAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAG
* * * * *
372681 ACTGAGGGTAAA-AAAGTCTCCAAGGTTAGAGCCGATA-GATAGACT-TTAGATAAGG-TAGTCT
64 ACTAAGGG-AAAGAAAGTCTCCAAGGTCAAAGCCGATAGGA-AGACTAATAG--AAGGAAAGTCT
372742 CT
125 CT
* * ** * ** * ** *
372744 AAGGTCAAAGCTGACAAACAGACTTTAGATAAGG-CAGTCTCCAAAATCAAAGTCGACAGGCAGA
1 AGGGTCAAAGCCGACAGGCAGAC-TAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGA
* * * * * * * * * *
372808 CTGAGGGATAGGAAAGTCTCCAGGGTCAAAACTGACAAGTAA-ACT-ATAAATAAGACAGTCTCT
65 CTAAGGGA-AAGAAAGTCTCCAAGGTCAAAGCCGA-TAGGAAGACTAATAGA-AGGAAAGTCTCT
* * * *
372871 AGGGTCAAAGCCAACATGCAGACTGAA-GGAAGGAAAGTCTCCACA-GTTAAAGCCGACAGGAAG
1 AGGGTCAAAGCCGACAGGCAGACT-AAGGGAAGGAAAGTCTCCA-AGGTCAAAGCCGACAGGCAG
* ** * * *
372934 ACTAAGGGAAGGAAAGTC-CCCGGGTCAATGTCGATAGGTAGACTAA-AGGAAGGAAAGTCTCT
64 ACTAAGGGAAAGAAAGTCTCCAAGGTCAAAGCCGATAGGAAGACTAATA-GAAGGAAAGTCTCT
* * * * * * * *
372996 AGGGTCAAAGCCAACAGGTAGACTACGGGAAGGAAGGTCTCCAAAGTCAAAGCCAACATGCAGTC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
* * * * * ** *
373061 TAAGGGTAGGAAAGTCTTCAAGGTCAAAGTCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
66 TAAGGGAAAGAAAGTCTCCAAGGTCAAAGCCGATAGGAAGACTAATAGAAGGAAAGTCTCT
* * * * * * * *
373122 AAGGTCAAAGCTGATAGGCAGACTAAGGGAAGGAAAGTCTCTAGGGTTAAAGCCGATAGGAAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
* * * * * *
373187 TAA-GAAAAGAAAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAGAGAAAGAAAGTCTCC
66 TAAGGGAAAG-AAAGTCTCCAAGGTCAAAGCCGATAGGAAGACTAATAGAAGGAAAGTCTCT
* * * * * *
373248 ATGGTCAAAGCCGATAAGCAGAATAAGGGGAGGAAAGTATCCA
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCA
373291 GAAGTTTAAT
Statistics
Matches: 729, Mismatches: 163, Indels: 68
0.76 0.17 0.07
Matches are distributed among these distances:
124 5 0.01
125 106 0.15
126 435 0.60
127 166 0.23
128 15 0.02
129 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (126 bp):
AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
TAAGGGAAAGAAAGTCTCCAAGGTCAAAGCCGATAGGAAGACTAATAGAAGGAAAGTCTCT
Found at i:372845 original size:85 final size:84
Alignment explanation
Indices: 372737--372913 Score: 192
Period size: 85 Copynumber: 2.1 Consensus size: 84
372727 TAGATAAGGT
* * * * * * * *
372737 AGTCTCTAAGGTCAAAGCTGACAAACAGACTTTAGATAAGGCAGTCTCCAAAATCAAAGTCGACA
1 AGTCTCCAAGGTCAAAACTGACAAACAAACTATAAATAAGACAGTCTCCAAAATCAAAGCCAACA
*
372802 GGCAGACTGAGGGATAGGAA
66 GGCAGACTGAAGGA-AGGAA
* ** * ***
372822 AGTCTCCAGGGTCAAAACTGACAAGTAAACTATAAATAAGACAGTCTCTAGGGTCAAAGCCAACA
1 AGTCTCCAAGGTCAAAACTGACAAACAAACTATAAATAAGACAGTCTCCAAAATCAAAGCCAACA
*
372887 TGCAGACTGAAGGAAGGAA
66 GGCAGACTGAAGGAAGGAA
372906 AGTCTCCA
1 AGTCTCCA
372914 CAGTTAAAGC
Statistics
Matches: 75, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
84 13 0.17
85 62 0.83
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.18
Consensus pattern (84 bp):
AGTCTCCAAGGTCAAAACTGACAAACAAACTATAAATAAGACAGTCTCCAAAATCAAAGCCAACA
GGCAGACTGAAGGAAGGAA
Found at i:381390 original size:22 final size:23
Alignment explanation
Indices: 381365--381409 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
381355 ATTCTTAGTA
*
381365 ATTAAGTAAATATTG-ATGAATG
1 ATTAAGAAAATATTGAATGAATG
* *
381387 ATTATGAAAATGTTGAATGAATG
1 ATTAAGAAAATATTGAATGAATG
381410 CCATGAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (23 bp):
ATTAAGAAAATATTGAATGAATG
Found at i:385885 original size:13 final size:12
Alignment explanation
Indices: 385865--385912 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
385855 AGATGAAAAT
385865 TTTTTTTTATTA
1 TTTTTTTTATTA
*
385877 TTTTATTTTGTTA
1 TTTT-TTTTATTA
385890 TTATTTTTTATTA
1 TT-TTTTTTATTA
385903 TATTTTTTTA
1 T-TTTTTTTA
385913 AATTTTACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 4 0.13
13 24 0.77
14 3 0.10
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTTTTATTA
Found at i:385890 original size:16 final size:16
Alignment explanation
Indices: 385866--385896 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
385856 GATGAAAATT
*
385866 TTTTTTTATTATTTTA
1 TTTTGTTATTATTTTA
385882 TTTTGTTATTATTTT
1 TTTTGTTATTATTTT
385897 TTATTATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTGTTATTATTTTA
Found at i:387088 original size:29 final size:29
Alignment explanation
Indices: 387046--387102 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
387036 CATTTGCTTG
*
387046 TGTCCCCCATGATTGCGTGCTACATTGCA
1 TGTCCCCCATGATTGCATGCTACATTGCA
*
387075 TGTCTCCCATGATTGCATGCTACATTGC
1 TGTCCCCCATGATTGCATGCTACATTGC
387103 CTTGCATGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33
Consensus pattern (29 bp):
TGTCCCCCATGATTGCATGCTACATTGCA
Found at i:387173 original size:19 final size:19
Alignment explanation
Indices: 387149--387201 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
387139 GTATTTCATG
387149 ATTTTTTTTATTTCTTTTC
1 ATTTTTTTTATTTCTTTTC
* * *
387168 ATTTTTATTATTATTTTTTT
1 ATTTTTTTTATT-TCTTTTC
*
387188 A-ATTTTTTATTTCT
1 ATTTTTTTTATTTCT
387202 ACTTATTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 2 0.07
19 19 0.70
20 6 0.22
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (19 bp):
ATTTTTTTTATTTCTTTTC
Found at i:387195 original size:29 final size:30
Alignment explanation
Indices: 387151--387211 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
387141 ATTTCATGAT
* *
387151 TTTTTTTATTTCTTTTCATTTTTA-TTATTA
1 TTTTTTTAATTCTTTT-ATTTCTACTTATTA
387181 TTTTTTTAATT-TTTTATTTCTACTTATTA
1 TTTTTTTAATTCTTTTATTTCTACTTATTA
387210 TT
1 TT
387212 ATATTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 6 0.21
29 12 0.43
30 10 0.36
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (30 bp):
TTTTTTTAATTCTTTTATTTCTACTTATTA
Found at i:388121 original size:61 final size:61
Alignment explanation
Indices: 388006--388145 Score: 174
Period size: 61 Copynumber: 2.3 Consensus size: 61
387996 TTAAAGATGA
* * * *
388006 TAAAGATGAGAAGAGTGATAAAGGTGCTAATATGCTGATTCACAGCCAGCGATATTGGGTT
1 TAAAGATGAGAAGAATGATAAAGGTGCTAAAATGCTGATTCACAGCCAGCGATATTAGGCT
* ** *
388067 TAAAGATGAGAAAAATGATAAAGGTGCTAAAATGCTGATTCA-AGGGTAGGGATATTAGGCT
1 TAAAGATGAGAAGAATGATAAAGGTGCTAAAATGCTGATTCACA-GCCAGCGATATTAGGCT
* *
388128 TAGAGATGTGAAGAATGA
1 TAAAGATGAGAAGAATGA
388146 CAATGTGCTG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
60 1 0.01
61 66 0.99
ACGTcount: A:0.39, C:0.08, G:0.29, T:0.25
Consensus pattern (61 bp):
TAAAGATGAGAAGAATGATAAAGGTGCTAAAATGCTGATTCACAGCCAGCGATATTAGGCT
Found at i:388187 original size:52 final size:52
Alignment explanation
Indices: 388099--388285 Score: 184
Period size: 52 Copynumber: 3.6 Consensus size: 52
388089 GGTGCTAAAA
* * * * *
388099 TGCTGATTCAAGGGTAGGGATATTAGGCTTAGAGATGTGAAGAATGACAATG
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAGAGATGAGAAGAATGACAATG
* *
388151 TGCTGATTCATGGCTAGCGACATTAGACTT-GAAGATGAGAAGAATGCCAATG
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAG-AGATGAGAAGAATGACAATG
* * *
388203 TGCTGATTCAAGGCTAGCGACATTGGGCTT-GAGA-AAGAAGAAGGTG-CTAATG
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAGAGATGAGAAGAA--TGAC-AATG
* * * *
388255 CGTTGATTCAAGGCCAGCGACATTGGACTTA
1 TGCTGATTCAAGGCTAGCGACATTAGACTTA
388286 AAGGTGCCAA
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 7 0.06
51 5 0.04
52 103 0.90
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (52 bp):
TGCTGATTCAAGGCTAGCGACATTAGACTTAGAGATGAGAAGAATGACAATG
Found at i:388291 original size:43 final size:43
Alignment explanation
Indices: 388243--388331 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 43
388233 GAGAAAGAAG
*
388243 AAGGTGCTAATGCGTTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGGTGCCAATGCGTTGATTCAAGGCCAGCGACATTGGACTTA
* *
388286 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACGTTGGACTTA
1 AAGGTGCCAATGCGTTGATTCAAGGCCAGCGACATTGGACTTA
388329 AAG
1 AAG
388332 ATGAAGGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (43 bp):
AAGGTGCCAATGCGTTGATTCAAGGCCAGCGACATTGGACTTA
Found at i:388667 original size:13 final size:13
Alignment explanation
Indices: 388649--388673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
388639 ATAATGCACA
388649 GTATCGATACATT
1 GTATCGATACATT
388662 GTATCGATACAT
1 GTATCGATACAT
388674 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:388686 original size:20 final size:21
Alignment explanation
Indices: 388661--388713 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
388651 ATCGATACAT
*
388661 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
388681 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
388702 TGTATCGATACA
1 TGTATCGATACA
388714 GGTGCTTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:388791 original size:13 final size:13
Alignment explanation
Indices: 388773--388832 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
388763 TACATACAAG
388773 ATGTATCGATACA
1 ATGTATCGATACA
*
388786 ATGTATTGATAC-
1 ATGTATCGATACA
*
388798 ATG-A-CCA-A-A
1 ATGTATCGATACA
*
388807 TTGTATCGATACA
1 ATGTATCGATACA
388820 ATGTATCGATACA
1 ATGTATCGATACA
388833 TGACCAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
9 3 0.08
10 2 0.06
11 3 0.08
12 4 0.11
13 24 0.67
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:388817 original size:34 final size:34
Alignment explanation
Indices: 388755--388853 Score: 159
Period size: 34 Copynumber: 3.0 Consensus size: 34
388745 CTTAACTGTT
388755 TGTATTGATACAT-A-CAAGA-TGTATCGATACAA
1 TGTATTGATACATGACCAA-ATTGTATCGATACAA
388787 TGTATTGATACATGACCAAATTGTATCGATACAA
1 TGTATTGATACATGACCAAATTGTATCGATACAA
*
388821 TGTATCGATACATGACCAAATTGTATCGATACA
1 TGTATTGATACATGACCAAATTGTATCGATACA
388854 TTGGCTTGTA
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
32 13 0.21
33 2 0.03
34 48 0.76
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (34 bp):
TGTATTGATACATGACCAAATTGTATCGATACAA
Found at i:391899 original size:22 final size:22
Alignment explanation
Indices: 391874--391925 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
391864 GTGCATTTAG
391874 ATGTTTTAAGTTCCCAAAACGT
1 ATGTTTTAAGTTCCCAAAACGT
***
391896 ATGTTTTGTTTTCCCAAAACGT
1 ATGTTTTAAGTTCCCAAAACGT
391918 ATGTTTTA
1 ATGTTTTA
391926 TTACCGACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (22 bp):
ATGTTTTAAGTTCCCAAAACGT
Found at i:395001 original size:13 final size:13
Alignment explanation
Indices: 394983--395007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
394973 AAAATTCAGA
394983 TGTATCGATACAG
1 TGTATCGATACAG
394996 TGTATCGATACA
1 TGTATCGATACA
395008 AAGGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:396877 original size:18 final size:17
Alignment explanation
Indices: 396856--396915 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 17
396846 GAAACATGTG
396856 ATTAAAGGAAAACGTTTT
1 ATTAAAGGAAAA-GTTTT
*
396874 ATTAAGGGGGAGAAA-TTTT
1 ATTAA--AGGA-AAAGTTTT
*
396893 TTTAAAGGAAAATGTTTT
1 ATTAAAGGAAAA-GTTTT
396911 ATTAA
1 ATTAA
396916 GGAGGAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
16 3 0.09
17 3 0.09
18 13 0.39
19 8 0.24
20 3 0.09
21 3 0.09
ACGTcount: A:0.42, C:0.02, G:0.20, T:0.37
Consensus pattern (17 bp):
ATTAAAGGAAAAGTTTT
Found at i:396898 original size:37 final size:37
Alignment explanation
Indices: 396857--396930 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
396847 AAACATGTGA
* *
396857 TTAAAGGAAAACGTTTTATTAAGGGGGAGAAATTTTT
1 TTAAAGGAAAACGTTTTATTAAGGAGGAGAAAATTTT
*
396894 TTAAAGGAAAATGTTTTATTAAGGAGGAGAAAATTTT
1 TTAAAGGAAAACGTTTTATTAAGGAGGAGAAAATTTT
396931 CATTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.41, C:0.01, G:0.23, T:0.35
Consensus pattern (37 bp):
TTAAAGGAAAACGTTTTATTAAGGAGGAGAAAATTTT
Found at i:396917 original size:17 final size:17
Alignment explanation
Indices: 396860--396918 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
396850 CATGTGATTA
*
396860 AAGGAAAACGTTTTATT
1 AAGGAAAATGTTTTATT
396877 AAGGGGGAGAAAT-TTTT-TT
1 AA---GGA-AAATGTTTTATT
396896 AAAGGAAAATGTTTTATT
1 -AAGGAAAATGTTTTATT
396914 AAGGA
1 AAGGA
396919 GGAGAAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
16 4 0.12
17 14 0.41
18 2 0.06
19 2 0.06
20 9 0.26
21 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.24, T:0.34
Consensus pattern (17 bp):
AAGGAAAATGTTTTATT
Found at i:396930 original size:20 final size:20
Alignment explanation
Indices: 396870--396930 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 20
396860 AAGGAAAACG
*
396870 TTTTATTAAGGGGGAG-AAA
1 TTTTATTAAGGAGGAGAAAA
* *
396889 TTTTTTTAA--AGGA-AAATG
1 TTTTATTAAGGAGGAGAAA-A
396907 TTTTATTAAGGAGGAGAAAA
1 TTTTATTAAGGAGGAGAAAA
396927 TTTT
1 TTTT
396931 CATTTTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 9
0.70 0.11 0.20
Matches are distributed among these distances:
17 5 0.16
18 8 0.25
19 8 0.25
20 8 0.25
21 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.39
Consensus pattern (20 bp):
TTTTATTAAGGAGGAGAAAA
Found at i:397640 original size:15 final size:14
Alignment explanation
Indices: 397620--397652 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
397610 GTATCGATAC
397620 ATACAAGATGTATCG
1 ATACAA-ATGTATCG
397635 ATAC-AATGTATCG
1 ATACAAATGTATCG
397648 ATACA
1 ATACA
397653 TGACCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.71
14 1 0.06
15 4 0.24
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (14 bp):
ATACAAATGTATCG
Found at i:397645 original size:13 final size:13
Alignment explanation
Indices: 397627--397652 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
397617 TACATACAAG
397627 ATGTATCGATACA
1 ATGTATCGATACA
397640 ATGTATCGATACA
1 ATGTATCGATACA
397653 TGACCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:398491 original size:49 final size:49
Alignment explanation
Indices: 398429--398552 Score: 185
Period size: 49 Copynumber: 2.5 Consensus size: 49
398419 TAGAGCTTTC
* *
398429 AAAGGTGCTAATATGTTGATTCAAGGTTAGTGACATTAAAATTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGTTAGTGACATTAAAATTAAAGAT
* ** *
398478 AAAGGTGCCAATATGCTGATTCAAGGTTAGTGACGTTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGTTAGTGACATTAAAATTAAAGAT
*
398527 GAAGGTGCCAATATGCTGATTCAAGG
1 AAAGGTGCCAATATGCTGATTCAAGG
398553 CCAGCAATAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.29
Consensus pattern (49 bp):
AAAGGTGCCAATATGCTGATTCAAGGTTAGTGACATTAAAATTAAAGAT
Found at i:400026 original size:476 final size:476
Alignment explanation
Indices: 398749--404043 Score: 2273
Period size: 476 Copynumber: 11.1 Consensus size: 476
398739 GTTGTATGCA
*
398749 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCC-AATCACAAAATGAATGTAGATCA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
398813 TTCCTAGAATCCAAGTTTGTCACAAATGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAG
66 TTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAG
* *
398878 AAAGCCTTTCTTACGAAACCAATGCTTTAATATCATGTATCCTTATTAGAAGACTAAGTTTATGG
131 AAAGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGG
*
398943 TGCCTAATCCTGAAAAGAAT-GGTATTGGTATGACTATTCATGTTTTTCTTATTTAAAAGACAAA
196 TGCCTAATCCTGAAAAGAATGGGTATTAGTATGACTATTCATGTTTTT-TTATTTAAAAGACAAA
* * * * * *
399007 -TTTGATTATATCAAAAAAGGTTAAAAGAAATGCATTTCTGGGGACACCAAAGCACCAATGTCAT
260 CTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAATGTCAT
* * *
399071 GTATCCTATTGAATTGAATGTGTTTTTGGTTCCTAATCATGAAAGGAATGGAGACTATTACGAGA
325 GTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATAAAAGGAATGGAGACTATTACGAGA
* *
399136 ATCGATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGTAAAGAAAAGATT
390 ATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
399201 TCCAAGCAAAAG-AAAATCATT
455 TCCAAGCAAAAGAAAAATCATC
* * ** ** * **
399222 AATATCATTTATCCTAA-AGAGGAGAATGTTTTTATAAAGAGTTATCACAAAGCGAATGAAGATC
1 AATATCATTTATCCTAATA-AGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* ** * *
399286 ATTACTAAAATCCATG-TTGTCATAATTGAGGCACGAACTTAAACTTTA-ACAAAATTTGAGGGA
65 ATTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACA-AAAATTGGTGGGA
* * * * *
399349 AGAAAACCTTTCTTATGAAACCAAAG-TGTCAATATCGTATATCCTTA-TAGGAAGGCTAAGTTT
129 AGAAAGCCTTTCTTACGAAACCAATGCT-TCAATATCGTGTATCCTTATTA-GAAGACTAAGTTT
* * * *
399412 ATGGTGCCT-ATTCTAGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAAAG
192 ATGGTGCCTAATCCT-GAAAAGAATGGGTATTAGTATGACTATTCATGTTT-TTTTATTTAAAAG
* * *
399476 ACAAACTTTAATTCAATCAAAAACGGTTGAAAGAAATGCGTTTCTTGCGACACCAAAGCATCAAT
255 ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAAT
* * * * * ** *
399541 GCCATGTATCCGAATGAAAGGAATGTGTTTTTGGTGCCCAATCATAAAAAAAATGAAGACTATTA
320 GTCATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATAAAAGGAATGGAGACTATTA
* *
399606 CGAGAATCAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAATGAAA
385 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAA
*
399671 AGATTTCCATGCAAAAGAAAAAT-ATC
450 AGATTTCCAAGCAAAAGAAAAATCATC
* * * * *
399697 AGTATCATTTATACTAATAAAGAGAATATGTTTATAGTGCCTAATAACAAAATAAATGAAGATCA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * *
399762 TTACTAGAATCCATGTTTGTCATAGTTGAGGCTA-AAACTTAGGCTTCACAAAAATTGGTGGGAA
66 TTACTAGAATCCATGTTTGTCATAATTGAGGC-ACGAACTTAGGCTTTACAAAAATTGGTGGGAA
* * * * * *
399826 GAATGCCATTCTTACGACACCAATGCTTCAATATCGCGTATCATTATTAGAAGACTAAGTTTATA
130 GAAAGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATG
* * *
399891 GTGCCTAATCCTGAAAAGAATGGGTATTAGTATGAGTACTCATGTTTCTTTTATTTAAGAGACAA
195 GTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACTATTCATGTTT-TTTTATTTAAAAGACAA
* * *
399956 ACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACGCCAAAGCGTCAATGTCA
259 ACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAATGTCA
* *
400021 TGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATCAAAGGAATGGAGACTGTTACGAG
324 TGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATAAAAGGAATGGAGACTATTACGAG
* *
400086 AATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTAAGGAAAATAGGGCAACGAAAAGAT
389 AATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGAT
400151 TTCCAAGCAAAAG-AAAATCAAT-
454 TTCCAAGCAAAAGAAAAATC-ATC
* * ** * *** *
400173 AATATCATTTATCCTAA-ATAGGAGAATGT-TTCTATAATGAGTTATCACAAAGCAAATGGAGAT
1 AATATCATTTATCCTAATA-AGGAGAATATGTT-TATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * *
400236 CATTACTAAAATCTATGTTTGTCACAATTGAGACACGAACATAGTCTTTAACAAAATTTAAAAGA
64 CATTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTT-AC------------A
* * * *
400301 CAAACATTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTACGACACCAATG-TGCCAAT
116 -AAA-ATTG------------GTGG--G-AAGAAA-GCCTTTCTTACGAAACCAATGCT-TCAAT
* * * * * ** * ** * * * *
400365 GTCGTGTATTCTAATGA-AAGAAATGTGTTTTTCATTCC-AATCATGAAAAGAATAGAG-ACT-G
162 ATCGTGTATCCTTATTAGAAG-ACTAAGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGTATTAG
* * * ** ** * * * *** ** *
400426 TTATGA-GAATCTATGTTTGCCTTT-TTTAAGGGATGAGCTTTAATTTTAAGGAAAATAG-AGCA
225 -TATGACTATTC-ATGTTT--TTTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTTG-A
* ** * ** * * * * * *
400488 AAGAAAAG-ATTTC-CACGTAAAAGAAAATCATCAATATCTTTTATCCTAAT-AA-GGAGATGCG
285 AAGAAATGCATTTCTTGCG--ACACCAAAGCATCAATGTCATGTATCCTATTGAATGGA-ATGTG
* * * * * * * * * * ** *
400549 -TTTGGAGTGCCTAATCAGAAAATGAAAGAAGA-TCATTA-GTAGAATCCATGTTTGTCACAGTT
347 TTTTTG-GTTCCCAATCATAAAAGGAATGGAGACT-ATTACG-AGAATCAATGCTTGCCTTATTT
* * * ** * * * ** *
400611 GAGGTACG-AC-TTAGGCTTTACA--AAAATAAGAGG-GAAG-AATGCCTTTCTTA-C-AAAG-C
409 AAGGGATGAACTTTA-ATTTTA-AGGAAAAT-AG-GGCAAAGAAAAG-ATTTCCAAGCAAAAGAA
* *
400667 CAATGCTTC
469 AAAT-CATC
* * * * * * * * **
400676 AATATCGTGTAT-CTATATTAGAAGACTAAT-TTTATGGTGCCTAATC-CTGAAAGGAATGGGGA
1 AATATCATTTATCCTA-ATAAGGAGAAT-ATGTTTATAGTGCCTAATCAC-AAAATGAATGAAGA
* * ** * * * * * *
400738 TTAGTA-T-GACTATTTATGTTTGTCTTACTTAAGAG-ACAAACTT-TGATTCTATCAAAAA-TG
63 TCATTACTAGA--ATCCATGTTTGTCATAATTGAG-GCACGAACTTAGGCTT-TA-CAAAAATTG
* * * * * ** * * *
400798 GTTGAAAGAAATGCTTTTCTTGC-AACACCAAAGAGTCAATGTCATGTAT-CTT-TTTGAACGGA
123 GTGGGAAGAAA-GCCTTTCTTACGAA-ACCAATGCTTCAATATCGTGTATCCTTATTAGAA--GA
* * * * * * * *
400860 ATATGTTTTTGGTTCCCAATCATGAAAAGCATGGAGACTGTTACAAGAATTATGTTTACAATGAG
184 CTAAGTTTATGGTGCCTAATCCTGAAAAGAATGG-G--TATT---AG---TATG---AC--T---
* * * ** * * ** * *
400925 GAGAATATAACT-TTGCTTGCCTTATGTAACGGATAAACTTT-ATTTTTAAGGAAAATAAGG--C
232 ----AT-TCA-TGTT--TT--TTTATTTAAAAGACAAACTTTGA-TTCT-ATCAAAA-ACGGTTG
* * * * ** * * * * * * *
400986 AACA-AAAAG-ATTTCCATGCAAAAGAAAAACTTCAATATCATTTATCCTAATG-AGGAGAATAT
284 AA-AGAAATGCATTT-CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAATG-GAATGT
**** * * * * * * * * * * ** **
401048 GTTTACAATGCCTAACCACAAAATGAATGAAGA-TCATTACTAGAATTAATGTTTGTCACAGCTA
346 GTTTTTGGTTCCCAATCATAAAAGGAATGGAGACT-ATTACGAGAATCAATGCTTGCCTTATTTA
* * ** * * * * * ** * **
401112 AGGCACGAA-TTTAGGCTTTACA--AAAATTGGTGGAAA-TAATGCCTTTCTTA-C-GAA-ACCA
410 AGGGATGAACTTTA-ATTTTA-AGGAAAATAGG-GCAAAGAAAAG-ATTTCCAAGCAAAAGAAAA
*
401170 ATGCTTC
471 AT-CATC
* * * * * * * * *
401177 AATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATC-CTGTAAA-GAATCG-GGA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCAC--AAAATGAAT-GAAGA
* * ** * * * * *
401239 TTAGTA-T-GACTATTTATGTTTG-CTTTATTTAAGAGGCA--AACTTTA--ATTCTATAAAAAA
63 TCATTACTAGA--ATCCATGTTTGTC-ATAATT--GAGGCACGAAC-TTAGGCTT-TACAAAAAT
* * * * * * * * * *
401297 CGGTTGAAAGAAATGCTTTTCTTGC-AACACGAAAGCGTCAATATCATGTA-CCCTATT-GAATG
121 TGGTGGGAAGAAA-GCCTTTCTTACGAA-ACCAATGCTTCAATATCGTGTATCCTTATTAGAA--
* ** * * ** * * * * * *
401359 GAATGTGTTTTTGGTTCAGAATCATGAAAGGAATGGAGACTATT-GCAAGA--A-TCAACGCTTG
182 GACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGG-G--TATTAGTATGACTATTC-ATG-TTT
** ** ** * ** * *
401420 CCTTATTTAAGGGATGAACTTTGATTTCAAGGAAAATA-GG--GCAAAGAAAAG-ATTTC-CGAA
242 TTTTATTTAAAAGACAAACTTTGA-TTCTATCAAAA-ACGGTTG-AAAGAAATGCATTTCTTG--
* ** * * * * * * ****
401480 CGAAAGAAAATCAAT-AATATCATTTATCCTAAT-AAGGAGAATGT-TTTTATAGTGAGTAATCA
302 CGACACCAAAGC-ATCAATGTCATGTATCCTATTGAATG-GAATGTGTTTT-TGGTTCCCAATCA
* * * * * * * ** * * * * *
401542 -CAATGCGAATGAAGA-TCATTACTAAAATCAATGTTTGTCACAATTGAGGCACGAAC-TTAGAC
364 TAAAAG-GAATGGAGACT-ATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTA-AT
* * * ** * ** *
401604 TTTAA-GAAAAT-GTGAGGAAAG-AGAGCCTTTCTTA-CGAAA-CCAAAGCATC
426 TTTAAGGAAAATAG-G-GCAAAGAAAAG-ATTTCCAAGCAAAAGAAAAATCATC
* * * * * * * * ** ** *
401653 AATATCGTATATCCTTACT-AGAAGACTAAGTTTAT-GCTGCCTATTCTAGAAAAAAAATGGGGG
1 AATATCATTTATCC-TAATAAGGAGAATATGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGA
* * ** * * * ** * * * **
401716 TTACTA-TA-ACTATTTATGTTTGTC-TTATTTAGGAGATAAACTT-TGATTCTATAAAAAACGG
63 TCATTACTAGA--ATCCATGTTTGTCATAATTGAGG-CACGAACTTAGGCTT-TACAAAAATTGG
** * * * * * * * *
401777 T-TAAGAGAAATG--TTT-TTAATTGAACACCAATG-TGTTAATGTCATGTATCATAATGAAAAG
124 TGGGA-AGAAA-GCCTTTCTT-A-CGAA-ACCAATGCT-TCAATATCGTGTATCCTTATTAGAAG
* ** * * * * * * * * **
401837 ATTGTGCTTT-TGCTTCCCAATCATGAAAA-AAT-GGTGACT-GTTACGA-GAATCAATGCTTGC
183 ACTAAG-TTTATGGTGCCTAATCCTGAAAAGAATGGGT-ATTAG-TATGACTATTC-ATG-TTTT
* * * * * * ** *
401897 CTAATTTAAGAGATAAACTTTGCTTTTATCAAAAACGGTTGAAAGAAATGTTTTTCTTGCAACAC
243 TTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACAC
* ** * ** * * * *
401962 CAATGTGTTAATGTCATGTATTGTAATGAAAGGAATGTGTTTTTGGTTTCGAATCATGAAAA-GA
308 CAAAGCATCAATGTCATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCAT-AAAAGGA
* * * * *
402026 ATAGAGAC-AGTTACGAGAATCAATGCTTGCTTTATTGAAGGGATGAACTTTAATTTTCAGTAAA
372 ATGGAGACTA-TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAA
* * *
402090 ATAAGGTAAAGAAAAGATTT-CAATGCAAAAG-AAAATCACC
436 ATAGGGCAAAGAAAAGATTTCCAA-GCAAAAGAAAAATCATC
* * * * * *
402130 AATGTCATTTATCCTAATAAGGAGAATGTGTTTAAAGTGTCTAATCACAAAATGAATGAAGGTAA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * ** * * *
402195 TTACTAGAATCCAGGTTTGCCCCAGTTGAGGCACGAACTTAGACTTTATAAAAA-TGGATGGGAA
66 TTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACAAAAATTGG-TGGGAA
* *
402259 GAAAGCCTTTCTTACGAAACCAAAGCATT-AATATCCTGTAT-C-----------C----TTTAT
130 GAAAGCCTTTCTTACGAAACCAATGC-TTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTAT
* * * * * ***
402307 GGTGCATAAAT-TTGAAAAGGATAGGG-ATTAGTATGGCTATTCATGTTTGTCTTATTTTGGAGA
194 GGTGCCT-AATCCTGAAAAGAAT-GGGTATTAGTATGACTATTCATGTTT-TTTTATTTAAAAGA
** * * * **
402370 CAAACTTTGATTCTATCAAAAATTGATGAAAGAAATGCTTTTCTTG-GAGCCCCAAAGGGTCAAT
256 CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGA-CACCAAAGCATCAAT
* * * * * * *
402434 GCCATGTATTCTAATGAAAGGAATGTGTTTTTGGTTCCCAATAATGAAAA-GAATGGAGATTGTT
320 GTCATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCAT-AAAAGGAATGGAGACTATT
* * * * * *
402498 ACGAGAATCAATGCTTACCTCATTTAAAGGATCAACATTGATTTTAAGGAAAATAGGGCAAAGAA
384 ACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAA
*
402563 AAGATTT-CAATTCAAAAG-AAAATCATC
449 AAGATTTCCAA-GCAAAAGAAAAATCATC
* * *
402590 TATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACTAAATGAATGAAGATCA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
402655 TTACTAGAATCTAAGTTTTTCACAATTAAGGCATGAACTTAGGCTTTACAAAAATTGGTGGGAAG
66 TTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAG
* *
402720 AAAGCCTTTTTTACGAAACCAATGCTTCAATATCGTGTATCC-CACTTAGAAGACTAAGTTTATG
131 AAAGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTA-TTAGAAGACTAAGTTTATG
* * * * * *
402784 GTGCCAAATCCTGAAAAGAATGGGGATTAGTATGATTATTCATGTTTGTCTTATGTAAGAGACAA
195 GTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACTATTCATGTTT-TTTTATTTAAAAGACAA
* *** * *
402849 ACTTTGATTCTATCAAAAATGGTTGAAAGAAATATTTTTCTTGTGACACCAAAGCGTCAATGTCA
259 ACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * *
402914 TGCATCCTAATGAAAGGAAT-TGTTTTTGGTTCCCAATCATGAAAA-GAATAGAGACTGTTATGA
324 TGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCAT-AAAAGGAATGGAGACTATTACGA
*
402977 GAATCAGTGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAAG
388 GAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAG-AAAAG
*
403042 ATTTCCATGCAAAAG-AAAATCATC
452 ATTTCCAAGCAAAAGAAAAATCATC
* * * ** *
403066 AATAACATTTATCCTAATGAGGATAATATGTTTATAGTGCCTAATCACAAGGTGAATGAATATCA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* ** * * *
403131 TTACTAGAATCCACGTTTGTTGTAGTTGAGGCACGAGCTTAGGCTTTACAAAAATTGGTGAGAAG
66 TTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAG
* * * *
403196 AATA-CCTTTCTCACAAAACCAATGCTTTAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTG
131 AA-AGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATG
* * * * * * *
403260 GTGCCTAATCTTAAAAAGAATGGGGATTAGTAAGATTTTTCAT-TTTTGTCTTATTTAAGAGGA-
195 GTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACTATTCATGTTTT-T-TTATTTAA-AAGAC
* * * * * * ** ** * *
403323 AAACTTTGCTTCTATCAAAAATGATTGAAAGAAATACTTTTCTTGCGGCATTAAAGTGTCATTTT
257 AAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAATGT
* * * * * * * * * *
403388 CAGGTATCCTAATGAAAGGAATATGATTCTGGCTCCCAATCATGAAAA-GAGTGGAGATTGTTAC
322 CATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCAT-AAAAGGAATGGAGACTATTAC
* * *
403452 GAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAAGAA
386 GAGAA-TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA-TAGGGCAAAGAA
* * *
403515 AAGATTTACATGC-AAAGGAAAATCATC
449 AAGATTTCCAAGCAAAAGAAAAATCATC
* * *
403542 AATATCATTTATCCTAATGA-GAAAATGTGTTTATAGTGCCTAATCACAAAATG-A--AAGATCA
1 AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * *
403603 TTACTAGAATCCATGTTTGTGACAATTGAGGTATGAAGTTAGACTTTACAAAAATTGGTGGGAGG
66 TTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAG
* * * * * * * * *
403668 AAAGCCTTACTTGCGAAATCAAAGCATCAACATCATGCAGT-CTT-TTGAGAAGACTATGTTTAT
131 AAAGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTA-TCCTTATT-AGAAGACTAAGTTTAT
* * * *
403731 GGTGCCTAATCCTTG-AAAGAATAGGG-ATTAGTATGACTATTCATGTTTGTCTAATTTTAGAGA
194 GGTGCCTAATCC-TGAAAAGAAT-GGGTATTAGTATGACTATTCATGTTT-TTTTATTTAAAAGA
* * *
403794 CAAACCTTGATTCTATCAAAAACGGTTGAAAGAAATAC-TTTCTTGCGACACCAATGCATCAATG
256 CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAATG
* * * ** * * *
403858 TCATGTATGCTAATAAAACGAATGTGTTTTTGGTTCCGAATCATGAAAA-GAATAGAGACTGTTA
321 TCATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCAT-AAAAGGAATGGAGACTATTA
* * * * * * *
403922 CGAGAATTAATGCTTGCGTTATTTAAGGGATGAACTTTAACTTTCAGTAAAATAAGGTAAAGAAA
385 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAA
* * *
403987 AGATTTTCATGCAAAAG-AAAATCACC
450 AGATTTCCAAGCAAAAGAAAAATCATC
* * * *
404013 AATGTCATTT-TCCTACTGAGGAGAATGTGTT
1 AATATCATTTATCCTAATAAGGAGAATATGTT
404044 CAATTCTTAG
Statistics
Matches: 3806, Mismatches: 740, Indels: 554
0.75 0.15 0.11
Matches are distributed among these distances:
458 3 0.00
459 15 0.00
460 349 0.09
461 8 0.00
462 2 0.00
470 11 0.00
471 165 0.04
472 194 0.05
473 202 0.05
474 99 0.03
475 438 0.12
476 1275 0.33
477 289 0.08
478 19 0.00
479 3 0.00
480 3 0.00
481 1 0.00
483 5 0.00
486 1 0.00
488 2 0.00
489 2 0.00
490 6 0.00
491 6 0.00
494 2 0.00
496 4 0.00
497 3 0.00
498 4 0.00
499 58 0.02
500 73 0.02
501 226 0.06
502 27 0.01
503 83 0.02
504 29 0.01
505 61 0.02
506 88 0.02
507 50 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAG
AAAGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGG
TGCCTAATCCTGAAAAGAATGGGTATTAGTATGACTATTCATGTTTTTTTATTTAAAAGACAAAC
TTTGATTCTATCAAAAACGGTTGAAAGAAATGCATTTCTTGCGACACCAAAGCATCAATGTCATG
TATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATAAAAGGAATGGAGACTATTACGAGAA
TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
CCAAGCAAAAGAAAAATCATC
Found at i:401992 original size:158 final size:159
Alignment explanation
Indices: 401742--402055 Score: 445
Period size: 158 Copynumber: 2.0 Consensus size: 159
401732 TGTTTGTCTT
*
401742 ATTTAGGAGATAAACTTTGATTCTATAAAAAACGGTTAAGAGAAATGTTTTTAATTGAACACCAA
1 ATTTAAGAGATAAACTTTGATTCTATAAAAAACGGTTAAGAGAAATGTTTTTAATTGAACACCAA
* *
401807 TGTGTTAATGTCATGTATCATAATGAAAAGATTGTGCTTTTGCTTCCCAATCATGAAAA-AATGG
66 TGTGTTAATGTCATGTATCATAATGAAAAGAATGTGCTTTTGCTTCCCAATCATGAAAAGAATAG
* *
401871 TGACTGTTACGAGAATCAATGCTTGCCTA
131 AGACAGTTACGAGAATCAATGCTTGCCTA
* * * *
401900 ATTTAAGAGATAAACTTTGCTTTTATCAAAAACGGTTGAA-AGAAATGTTTTT-CTTGCAACACC
1 ATTTAAGAGATAAACTTTGATTCTATAAAAAACGGTT-AAGAGAAATGTTTTTAATTG-AACACC
** * * * * *
401963 AATGTGTTAATGTCATGTATTGTAATGAAAGGAATGTGTTTTTGGTTTCGAATCATGAAAAGAAT
64 AATGTGTTAATGTCATGTATCATAATGAAAAGAATGTGCTTTTGCTTCCCAATCATGAAAAGAAT
402028 AGAGACAGTTACGAGAATCAATGCTTGC
129 AGAGACAGTTACGAGAATCAATGCTTGC
402056 TTTATTGAAG
Statistics
Matches: 137, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
157 3 0.02
158 104 0.76
159 30 0.22
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.34
Consensus pattern (159 bp):
ATTTAAGAGATAAACTTTGATTCTATAAAAAACGGTTAAGAGAAATGTTTTTAATTGAACACCAA
TGTGTTAATGTCATGTATCATAATGAAAAGAATGTGCTTTTGCTTCCCAATCATGAAAAGAATAG
AGACAGTTACGAGAATCAATGCTTGCCTA
Found at i:405634 original size:28 final size:28
Alignment explanation
Indices: 405591--406239 Score: 741
Period size: 28 Copynumber: 22.5 Consensus size: 28
405581 CGTTCATCTC
* * *
405591 TTCAAAGCCCATAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
405619 TTCAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
* * * *
405648 TTCAAAGCCCATAAGTTAGTAGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* *
405676 TTCAAATCCCACAAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CTT
* * *
405706 TTCAAAGCCCACAACTTAATGGCATCC-T
1 TTCAAAGCCCACAAGTCAGTGGCA-CCTT
*
405734 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
405762 TTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
405791 TTCAAAGCCCACAAGTCAGTGGCATCC-T
1 TTCAAAGCCCACAAGTCAGTGGCA-CCTT
*
405819 TTCAAAGCCCACAAGCCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
405847 TTCAAAGCCCACAAGTCAGTGGCA-TTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCT-T
*
405875 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
405903 TTCAAAGCCAACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
* ** *
405932 TTCAAAGCCCACAAGCCTCTGGTAACTCTTT
1 TTCAAAGCCCACAAGTCAGTGG-CAC-C-TT
405963 TTCAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* *
405991 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
406019 TTCAAAACCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
* *
406048 TTCAAAGCCCACAAG-CTAGTGGTAACTTTTT
1 TTCAAAGCCCACAAGTC-AGTGG-CAC--CTT
406079 TTCAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
* *
406107 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCTT
*
406135 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTT
*
406164 TTCAAAGCCCACAAG-CTAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTC-AGTGG-CAC-CTT
* *
406194 TTCAAAACCCACACGAGTTAGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CTT
406226 TTCAAAGCCCACAA
1 TTCAAAGCCCACAA
406240 TCTAGTGATA
Statistics
Matches: 533, Mismatches: 63, Indels: 48
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.01
28 290 0.54
29 117 0.22
30 51 0.10
31 44 0.08
32 26 0.05
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCTT
Found at i:405679 original size:57 final size:57
Alignment explanation
Indices: 405591--406239 Score: 779
Period size: 57 Copynumber: 11.2 Consensus size: 57
405581 CGTTCATCTC
* *
405591 TTCAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
405648 TTCAAAGCCCATAAGTTAGTAGCACCCTTTCAAATCCCACAAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC-ACTCTT
* * * *
405706 TTCAAAGCCCACAACTTAATGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
405762 TTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
** * *
405819 TTCAAAGCCCACAAGCCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATTC-T
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* *
405875 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCAACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
405932 TTCAAAGCCCACAAGCCT-CTGGTAACTCTTTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACAAG-TTAGTGG-CAC-C-CTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
405991 TTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAACCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * **
406048 TTCAAAGCCCACAAGCTAGTGGTAACTTTTTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACAAGTTAGTGG-CAC--CCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
406107 TTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * * *
406164 TTCAAAGCCCACAAGCTAGTGGTAACTCTTTTCAAAACCCACACGAGTTAGTGGCAACTCTT
1 TTCAAAGCCCACAAGTTAGTGG-CAC-CCTTTCAAAGCCCACA--AGTCAGTGGC-ACTCTT
406226 TTCAAAGCCCACAA
1 TTCAAAGCCCACAA
406240 TCTAGTGATA
Statistics
Matches: 517, Mismatches: 55, Indels: 35
0.85 0.09 0.06
Matches are distributed among these distances:
56 153 0.30
57 167 0.32
58 60 0.12
59 57 0.11
60 50 0.10
61 10 0.02
62 20 0.04
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.24
Consensus pattern (57 bp):
TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
Found at i:406007 original size:116 final size:116
Alignment explanation
Indices: 405618--406236 Score: 855
Period size: 116 Copynumber: 5.3 Consensus size: 116
405608 AGTGGCACCC
* * * *
405618 TTTCAAAGCCCACAAGTCAGTGACACTCTTTTCAAAGCCCATAAGTTAGTAGCACCCTTTCAAAT
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAG
* * * * *
405683 CCCACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAA-CTTAATGG-CA-TCC
65 CCCACAAGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGCCTAGTGGTAACTCT
* * * *
405733 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCAC-CCTTTCAAAG
* *
405798 CCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGCC-AGTGG-CAC-CT
65 CCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGCCTAGTGGTAACTCT
* *
405846 TTTCAAAGCCCACAAGTCAGTGGCA-TTCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCT-TTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAG
* *
405910 CCAACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGCCT-CTGGTAACTCTT
65 CCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGCCTAGTGGTAACTC-T
*
405962 TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAAC
1 TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGC
*
406027 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAG-CTAGTGGTAACTTTT
66 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGCCTAGTGGTAAC-TCT
406078 TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGC
1 TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGC
*
406143 CCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAG-CTAGTGGTAACTCT
66 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGCCTAGTGGTAACTCT
* *
406193 TTTCAAAACCCACACGAGTTAGTGGCAACTCTTTTCAAAGCCCA
1 TTTCAAAGCCCACA--AGTCAGTGGC-AC-CTTTTCAAAGCCCA
406237 CAATCTAGTG
Statistics
Matches: 456, Mismatches: 32, Indels: 28
0.88 0.06 0.05
Matches are distributed among these distances:
112 25 0.05
113 97 0.21
114 27 0.06
115 66 0.14
116 214 0.47
117 11 0.02
118 2 0.00
119 14 0.03
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (116 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGC
CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGCCTAGTGGTAACTCT
Found at i:406320 original size:62 final size:62
Alignment explanation
Indices: 406036--406300 Score: 198
Period size: 62 Copynumber: 4.4 Consensus size: 62
406026 CCCACAAGTC
* * * * * *
406036 AGTGGC-ACTCTTTTCAAAGCCCACAAGCTAGTG-GTAACTTTTTTTCAAAGCC--CACAAGTC
1 AGTGGCAACTCTTTTCAAAGCCCACAATCTAATGAG-AACTCTTTTT-AGAGCCTACACGAGTT
* * * * * * *
406096 AGTGGC-AC-CTTTTCAAAGCCCATAAGTC-AGTG-GCAC-CCTTTCAAAGCC--CACAAGTT
1 AGTGGCAACTCTTTTCAAAGCCCACAA-TCTAATGAGAACTCTTTTTAGAGCCTACACGAGTT
* * * * * *
406152 AGTGGC-ACTCTTTTCAAAGCCCACAAGCTAGTG-GTAACTCTTTTCAAAACCCACACGAGTT
1 AGTGGCAACTCTTTTCAAAGCCCACAATCTAATGAG-AACTCTTTTTAGAGCCTACACGAGTT
* *
406213 AGTGGCAACTCTTTTCAAAGCCCACAATCTAGTGATAACTCTTTTTAGAGCCTACACGAGTT
1 AGTGGCAACTCTTTTCAAAGCCCACAATCTAATGAGAACTCTTTTTAGAGCCTACACGAGTT
406275 -GATGGCAACTCTTTTCAAAGCCCACA
1 AG-TGGCAACTCTTTTCAAAGCCCACA
406301 CAAGTTAATG
Statistics
Matches: 176, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
56 22 0.12
57 24 0.14
58 4 0.02
59 31 0.18
60 9 0.05
61 14 0.08
62 72 0.41
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (62 bp):
AGTGGCAACTCTTTTCAAAGCCCACAATCTAATGAGAACTCTTTTTAGAGCCTACACGAGTT
Found at i:407140 original size:20 final size:20
Alignment explanation
Indices: 407117--407191 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 20
407107 AGGTACCCAG
407117 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
407137 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
407157 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
407177 ATGTATCGATACATT
1 ATGTATCGATACATT
407192 CTATCTTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:410882 original size:476 final size:470
Alignment explanation
Indices: 409424--411120 Score: 1966
Period size: 476 Copynumber: 3.6 Consensus size: 470
409414 CTCCAACCCC
* *
409424 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTCAAAGAAATAC-TTTCTTG
1 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATTGAAAGAAATACTTTTCTTG
* * * * * * *
409488 CAACGCCAATGCATCAATGTCATGTATGCTAATGAAAGGAATGTGTTTTTGGTTTCGAATCATGA
66 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCATGA
* * * *
409553 AAAGAATAAAGATTGTTACGAGAATCAATGCTTGCTTTATTGAAGGGATGAACTTTAATTTTCAG
131 AAAGAATGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTCAG
* * * * * * * *
409618 TAAAATAAAGTAAAGAAAATATTTCCATGCAAAAGAAAATCACCAATGTCTTTTATCCTAATGAG
196 GAAAAT-AGGGAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAG
* *
409683 GAGAATGTGTTTAAAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCATGTTTGTC
260 GAGAATGTGTTTATAGTGCCTAATCAC--AATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * *
409748 CCAGTTGAGGCACGAACTTAAGCTTTATAAAAATTGATGGGAAGAAAGCCTTTCTTACGAAACCA
323 ACAATTGAGGCACGAACTTAGGCTTTACAAAAATTGATGGGAAGAAAGCCTTTCTTACGAAACCA
* * * *
409813 AAGCATT-AATAT-GCTGCATCC--TT-------T-A----TGGTGCATAAAT-TTGAAAAGGAT
388 ATGC-TTCAATATCG-TGTATCCTTTTAGAAGACTAAGTTTTGGTGCAT-AATCCTGAAAAGAAT
* **
409861 AGGGATTAGTTTGGCTATTCAT
450 -GGGATTAGTATGATTATTCAT
* *
409883 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGA-TGAAAGAAATGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GATTGAAAGAAATACTTTTCTT
* ** ** *
409947 GCGACCCCAAAGTGTCAATACCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATAATG
65 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCATG
* * * * * *
410012 AAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATCAACTTTGATTTTAA
130 AAAAGAATGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTCA
** ** * * *
410077 GGAAAATAGGGCAAAGAAAAGATTTTAATTTAAAAAAAAATCGTCAATATCATTTATCCTAATGA
195 GGAAAATAGGG-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAA
* * *
410142 GGCGAATTTGTTTATAGTGCCTAATCACAA--AATGAATGATCATTACTAGAATCTATGTTTGTC
259 GGAGAATGTGTTTATAGTGCCTAATCACAATGAATGAA-GATCATTACTAGAATCCATGTTTGTC
*
410205 ACAATTGAGGCACGAACTTAGGCTTTACAAAAATTGTTGGGAAGAAAGCCTTTCTTACGAAACCA
323 ACAATTGAGGCACGAACTTAGGCTTTACAAAAATTGATGGGAAGAAAGCCTTTCTTACGAAACCA
** * * *
410270 ATTTTTCAATATCATGTATCCTTTTTAGAAGACTAAGTTTATGGTGCTTAATCCTGAGAAGAATG
388 ATGCTTCAATATCGTGTATCC-TTTTAGAAGACTAAGTTT-TGGTGCATAATCCTGAAAAGAAT-
410335 GGGATTAGTATGATTATTCAT
450 GGGATTAGTATGATTATTCAT
* * * * *
410356 GTTTGTCTTATGTGAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAGTATTTTTCTTG
1 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATTGAAAGAAATACTTTTCTTG
* * * *
410421 CGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATCACGA
66 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCATGA
* * * * *
410486 AAAGAATGGAGACTATTATGAGAATCAATGCTTACCTTATTTAAGGGATGAACTTTAATTTTGAG
131 AAAGAATGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTCAG
* * * * *
410551 GAGAATAGGGAAAAGAAATGATTTCCATGCAAAAGAAAATCTTCAATACCATTTATCTTAATAAG
196 GAAAATAGGG-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAG
* * **
410616 GAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTATTAGAATCCACATTTGTC
260 GAGAATGTGTTTATAGTGCCTAATCACAA--TGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
410681 ATAATTGAGGCACGAACATAGGCTTTACAAAAATTGGTGGGAAGAACA-CCTTTCTTACGAAACC
323 ACAATTGAGGCACGAACTTAGGCTTTACAAAAATTGATGGGAAGAA-AGCCTTTCTTACGAAACC
*
410745 AATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGTGCCTAATCCTGAAAAGAAT
387 AATGCTTCAATATCGTGTATCCTT-TTAGAAGACTAAGTTT-TGGTGCATAATCCTGAAAAGAAT
* *
410810 GGAGAATAGTAAGATTATAT-AT
450 GG-GATTAGTATGATTAT-TCAT
* * * * * *
410832 TTTTGTCTTATTTAGGAGACAAACTTTGACTCTGTTAAAAACGATTGAAAGAAATACTTTTCTTG
1 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATTGAAAGAAATACTTTTCTTG
* * * * * * *
410897 CGACATCAAATCATCATTGTCATGTATCCTAATGAAAGGAATATGATTCTGGTTCACAGTCATGA
66 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCATGA
** * *
410962 AAAGAATGAAGACTGTTACGAGAATTC-ATGCTTGCCTTAGCTAAGCGATGAACTTTGATTTTCA
131 AAAGAATGAAGACTGTTACGAGAA-TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTCA
* * * * * *
411026 TGAAAACTAGGGAAGGAAAAGATTTACATGCAAAGGAAAATAATCAATATCATTTAACCTAATAA
195 GGAAAA-TAGGGAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAA
*
411091 GAAGAATGTGTTTATAGTGCCTAATCACAA
259 GGAGAATGTGTTTATAGTGCCTAATCACAA
411121 AATGGGGATT
Statistics
Matches: 1048, Mismatches: 156, Indels: 51
0.84 0.12 0.04
Matches are distributed among these distances:
456 8 0.01
457 96 0.09
458 2 0.00
459 53 0.05
460 193 0.18
467 1 0.00
468 1 0.00
472 4 0.00
473 283 0.27
475 4 0.00
476 388 0.37
477 15 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (470 bp):
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATTGAAAGAAATACTTTTCTTG
CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCATGA
AAAGAATGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTCAG
GAAAATAGGGAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
AGAATGTGTTTATAGTGCCTAATCACAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACA
ATTGAGGCACGAACTTAGGCTTTACAAAAATTGATGGGAAGAAAGCCTTTCTTACGAAACCAATG
CTTCAATATCGTGTATCCTTTTAGAAGACTAAGTTTTGGTGCATAATCCTGAAAAGAATGGGATT
AGTATGATTATTCAT
Found at i:411216 original size:100 final size:100
Alignment explanation
Indices: 411041--411221 Score: 222
Period size: 100 Copynumber: 1.8 Consensus size: 100
411031 ACTAGGGAAG
* * * *
411041 GAAAAGATTTACATGCAAAGGAAAATAATCAATATCATTTAACCTAATAAGAAGAATGTGTTTAT
1 GAAAAGATTTACAAGCAAAAGAAAATAATCAATATAATTTAACCTAATAAGAAGAAAGTGTTTAT
*
411106 AGTGCCTAATCACAAAATGGGGATTAGTTTGCAAA
66 AGTACCTAATCACAAAATGGGGATTAGTTTGCAAA
* * * * *
411141 GAAAAGGTTTCCAAGCAAAAGAAAATCAAT-AATATAATTTATCCT-ATAAAGGAGAAAGTTTTT
1 GAAAAGATTTACAAGCAAAAGAAAAT-AATCAATATAATTTAACCTAAT-AAGAAGAAAGTGTTT
**
411204 ATAGTATGTAATCACAAA
64 ATAGTACCTAATCACAAA
411222 GCGAATGACG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
99 2 0.03
100 62 0.93
101 3 0.04
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.28
Consensus pattern (100 bp):
GAAAAGATTTACAAGCAAAAGAAAATAATCAATATAATTTAACCTAATAAGAAGAAAGTGTTTAT
AGTACCTAATCACAAAATGGGGATTAGTTTGCAAA
Found at i:411475 original size:47 final size:48
Alignment explanation
Indices: 411394--411488 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 48
411384 CAAAAATAAA
411394 AAGTAAAAGGGGGTTTTTTTTTCAAATTGTTTGAATGAAAACTAAAAT
1 AAGTAAAAGGGGGTTTTTTTTTCAAATTGTTTGAATGAAAACTAAAAT
411442 AAGTAAAAGGGGG-TTTTTTTTCAAATTGTTTGAATGAAAACTAAAAT
1 AAGTAAAAGGGGGTTTTTTTTTCAAATTGTTTGAATGAAAACTAAAAT
411489 TAAACAAGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 34 0.72
48 13 0.28
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (48 bp):
AAGTAAAAGGGGGTTTTTTTTTCAAATTGTTTGAATGAAAACTAAAAT
Found at i:413501 original size:9 final size:9
Alignment explanation
Indices: 413489--413528 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
413479 TCACTTTTCT
413489 TTTTTTTTA
1 TTTTTTTTA
413498 TTTTTTTTA
1 TTTTTTTTA
*
413507 TTTTTTTAA
1 TTTTTTTTA
413516 TTTTTTTT-
1 TTTTTTTTA
413524 TTTTT
1 TTTTT
413529 ACAATTGCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 5 0.17
9 24 0.83
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:413510 original size:18 final size:17
Alignment explanation
Indices: 413483--413528 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
413473 AAATCTTCAC
*
413483 TTTTCTTTTTTTTT-AT
1 TTTTTTTTTTTTTTAAT
413499 TTTTTTTATTTTTTTAAT
1 TTTTTTT-TTTTTTTAAT
413517 TTTTTTTTTTTT
1 TTTTTTTTTTTT
413529 ACAATTGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 6 0.22
17 12 0.44
18 9 0.33
ACGTcount: A:0.09, C:0.02, G:0.00, T:0.89
Consensus pattern (17 bp):
TTTTTTTTTTTTTTAAT
Found at i:413534 original size:17 final size:18
Alignment explanation
Indices: 413497--413534 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
413487 CTTTTTTTTT
**
413497 ATTTTTTTTATTTTTTTA
1 ATTTTTTTTATTTTTACA
413515 ATTTTTTTT-TTTTTACA
1 ATTTTTTTTATTTTTACA
413532 ATT
1 ATT
413535 GCCATGCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
ATTTTTTTTATTTTTACA
Found at i:416631 original size:224 final size:224
Alignment explanation
Indices: 416241--416687 Score: 831
Period size: 224 Copynumber: 2.0 Consensus size: 224
416231 TTTCCGTAGT
*
416241 GGAGTAATTGCACTGAGCAAGGTTCAAAGTCCTTGAAGCATAATAGATGACATGACTTTTCTTGT
1 GGAGTAATTGCACTGAGCAAGGTTCAAAGTCCTTGAAGCATAATAGATGACATAACTTTTCTTGT
416306 TAATCCGTTGGCCTAGAACCGCTCCCACCGCATAGTTGCTTGCATCACACATGATCTCAAATGGT
66 TAATCCGTTGGCCTAGAACCGCTCCCACCGCATAGTTGCTTGCATCACACATGATCTCAAATGGT
*
416371 AAGCCCTATTGAGGTGGTTGAATGATAGGCGCACTAGTTAGTAATTCCTTGAGTTTATCAAACGC
131 AAGCCCTATTGAGGTGGTTGAATGATAGGCGCACTAGTCAGTAATTCCTTGAGTTTATCAAACGC
* *
416436 CTCCTTGTATTTCTTCACAAACTCAAATC
196 CTCCTTGCATTCCTTCACAAACTCAAATC
*
416465 GGAGTAATTGCACTGAGCAGGGTTCAAAGTCCTTGAAGCATAATAGATGACATAACTTTTCTTGT
1 GGAGTAATTGCACTGAGCAAGGTTCAAAGTCCTTGAAGCATAATAGATGACATAACTTTTCTTGT
*
416530 TAATCCGTTGGCCTAGAACCGCTCCCACCGCATAGTTGCTTGCATCACACATGTTCTCAAATGGT
66 TAATCCGTTGGCCTAGAACCGCTCCCACCGCATAGTTGCTTGCATCACACATGATCTCAAATGGT
*
416595 AAGCCCTATTGAGGTGGTTGAATGATAGGCGCACTAGTCAGTAATTCCTTGAGTTTATCAAATGC
131 AAGCCCTATTGAGGTGGTTGAATGATAGGCGCACTAGTCAGTAATTCCTTGAGTTTATCAAACGC
416660 CTCCTTGCATTCCTTCACAAACTCAAAT
196 CTCCTTGCATTCCTTCACAAACTCAAAT
416688 TCGACTTCCT
Statistics
Matches: 216, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
224 216 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (224 bp):
GGAGTAATTGCACTGAGCAAGGTTCAAAGTCCTTGAAGCATAATAGATGACATAACTTTTCTTGT
TAATCCGTTGGCCTAGAACCGCTCCCACCGCATAGTTGCTTGCATCACACATGATCTCAAATGGT
AAGCCCTATTGAGGTGGTTGAATGATAGGCGCACTAGTCAGTAATTCCTTGAGTTTATCAAACGC
CTCCTTGCATTCCTTCACAAACTCAAATC
Found at i:423624 original size:890 final size:887
Alignment explanation
Indices: 421959--423625 Score: 2198
Period size: 890 Copynumber: 1.9 Consensus size: 887
421949 TTAAGAGACT
* * * *
421959 AACTTTGATTTTACCAAAAACGGTTGAAAGAAATGCTTTTTTTACGACACCAATGTGTCAATGTC
1 AACTTTGATTCTACCAAAAACGGTTAAAAGAAACGCTTTTTTTACGACACCAACGTGTCAATGTC
** ** * *
422024 ATGTATCCTAATGAAAGAAATGTGTTTTCGGTTCTGAATCATGAAAAGAATAGTGACTGTTATGA
66 ATGTATCCTAATGAAAGAAATGTGTTTTCGGTTCCCAATCATGAAAAGAATAGAAACTATTACGA
422089 GAATCAATGCTTGCCTTACTTAACAAATGAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGA
131 GAATCAATGCTTGCCTTACTTAACAAATGAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGA
* * * * *
422154 TTTCCATGCAAAAAAAAATCATCAATATCTTTTATCCTAAAAAGGAGAATGTATTTGTAGTGCCC
196 TTTCCAAGCAAAAAAAAATCATAAATATCATTTATCCTAAAAAGGAGAATGTATTTATAGTGACC
* * * * * * **
422219 AATCAGAAAATGATTGAAGATCATTACTAGAATCTATGTTTGTCCCAATTGAGGCACGAACTTAG
261 AATCACAAAACGAATGAAGATCATTACAAAAATCCATGTTTCACCCAATTGAGGCACGAACTTAG
** * * * * *
422284 ACTTTACAGAAATTAATGGGAAGAAAGCCTTTCTTGGAAAGCTAAAGCTTTAGTATCGTGTATCT
326 ACTTTA-AGAAATT-ATGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATTAATATCGTATATCT
* * *
422349 TTATGAGAAGGCTAAGTTTATGGTGCCTATTCCTGAAAAGAATAGGTATTAGTATGATTATTCAT
389 TTATGAGAAGGCTAAGTTTATGGTGCCTATTCCTGAAAAGAATAGGGATTAGTATAACTATTCAT
* *
422414 GTTTGTCATATTTAAGAGACAAACTTTGATTTAATCAAAAACGGTTAAAAGAAATGCTTTTCTTC
454 GTTTGTCAAATTTAAGAGACAAACTTTAATTTAATCAAAAACGGTTAAAAGAAATGCTTTTCTTC
** * * *
422479 CGGCATCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTGCCTAATCATGA
519 CGAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTAGTGCCCAATCATGA
* * * * *
422544 AACCAATGGAGATTGTTACAAGAATCAAAGCTGGCCTTATTTAAGGGATGAACTTTAATTTTAAG
584 AAACAATGGAGACTATTACAAGAATCAAAGCTGGCCTCATTTAAGGGATGAAATTTAATTTTAAG
* ** ** *
422609 GAAATTAGGGCATCGAAAAGATTTCCATGCAAAAGAAAAACTTCAATATCATTTATCCTAATGAG
649 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACACCAATATCATTTATCCTAATAAG
* *
422674 GAGAATATGTTTATAGTGCCTAAACGCAAAATTAATGAAGATCATTACTAGAATCTATGTTTATG
714 GAGAATATGTTTATAGTGCCTAAACGCAAAATGAATGAAGATCATTACCAGAATCTATGTTTATG
422739 ACAGTTGAGGCGTGAACGCTTTGCAAAAATTGGTAGGAATATATGGTGCCTAATCTTGAAAAGAA
779 ACAGTTGAGGCGTGAACGCTTTGCAAAAATTGGTAGGAATATATGGTGCCTAATCTTGAAAAGAA
422804 TGCGGATTAGTATGACTATTCATATTTGTGTCATTTTAAAGATA
844 TGCGGATTAGTATGACTATTCATATTTGTGTCATTTTAAAGATA
*
422848 AACTTTGATTCTATCAAAAACGGTTAAAAGAAACG-TTTTTCTTACGACACCAACGTGTCAATGT
1 AACTTTGATTCTACCAAAAACGGTTAAAAGAAACGCTTTTT-TTACGACACCAACGTGTCAATGT
* * * * * *
422912 CATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATGAAAGGAATGGAAACTATTACG
65 CATGTATCCTAATGAAAGAAATGTGTTTTCGGTTCCCAATCATGAAAAGAATAGAAACTATTACG
* * *** * * *
422977 AGAATCAATGCTTGCTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAG
130 AGAATCAATGCTTGCCTTACTTAACAAATGAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAG
* * * *
423042 ATTTCCAAGGAAAAGAAAATCAATAAATATCATTTATCCTAAAGAGGAGAATGTTTTTATAGTGA
195 ATTTCCAAGCAAAAAAAAATC-ATAAATATCATTTATCCTAAAAAGGAGAATGTATTTATAGTGA
** * * * *
423107 GTAATCACAAAGCGAATGAAGATCATTACAAAAATCCCTG-TTCACCATAATTGAGGTACGAACT
259 CCAATCACAAAACGAATGAAGATCATTACAAAAATCCATGTTTCACC-CAATTGAGGCACGAACT
423171 TAGACTTT-AGTAAGATT-TGAGAGAAGAAAGCCTTTCTTACAAAACCAAAGCATTAATATCGTA
323 TAGACTTTAAG-AA-ATTATG-G-GAAGAAAGCCTTTCTTACAAAACCAAAGCATTAATATCGTA
* * * * *
423234 TATAC-TTCTGGGAAGGCTAATTTTATGGTGCCTATTCTTGAAAAGAATAGGGATTAGTGTAACT
384 TAT-CTTTATGAGAAGGCTAAGTTTATGGTGCCTATTCCTGAAAAGAATAGGGATTAGTATAACT
* * * * *
423298 ATTCATGTTTTTCAAATTTAAGAGTCAAACTTTAATTCT-ATCAAAAATGGTTGAAAGAAATGTT
448 ATTCATGTTTGTCAAATTTAAGAGACAAACTTTAATT-TAATCAAAAACGGTTAAAAGAAATGCT
* * * * * * *
423362 TTTCTTTCGAAACCAATGCATCAGTGTCATGTATCTTGATGAAAGGAATGTGTTTTTAGTTCCCA
512 TTTCTTCCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTAGTGCCCA
* * * * * *
423427 ATCATGAAAAGAATGGTGACTATTACGAGAATCAATGCTTGCCTCATTTAAGGGATTAAATTTAA
577 ATCATGAAAACAATGGAGACTATTACAAGAATCAAAGCTGGCCTCATTTAAGGGATGAAATTTAA
* *
423492 TTTTAAGGAAAATAGGGCAAAGAAACGATTTCCATGCAAAAGAAAATCACCAATATC-TCTTATC
642 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACACCAATATCAT-TTATC
* * * *
423556 CTAATAAGGAGAATGTGTTTGTAGTGCGTAATCAG-AAAATGAATGAAGATCATTACCAGAATCT
706 CTAATAAGGAGAATATGTTTATAGTGCCTAAAC-GCAAAATGAATGAAGATCATTACCAGAATCT
423620 ATGTTT
770 ATGTTT
423626 GTCCCAATTG
Statistics
Matches: 660, Mismatches: 107, Indels: 21
0.84 0.14 0.03
Matches are distributed among these distances:
888 9 0.01
889 189 0.29
890 459 0.70
891 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (887 bp):
AACTTTGATTCTACCAAAAACGGTTAAAAGAAACGCTTTTTTTACGACACCAACGTGTCAATGTC
ATGTATCCTAATGAAAGAAATGTGTTTTCGGTTCCCAATCATGAAAAGAATAGAAACTATTACGA
GAATCAATGCTTGCCTTACTTAACAAATGAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGA
TTTCCAAGCAAAAAAAAATCATAAATATCATTTATCCTAAAAAGGAGAATGTATTTATAGTGACC
AATCACAAAACGAATGAAGATCATTACAAAAATCCATGTTTCACCCAATTGAGGCACGAACTTAG
ACTTTAAGAAATTATGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATTAATATCGTATATCTTT
ATGAGAAGGCTAAGTTTATGGTGCCTATTCCTGAAAAGAATAGGGATTAGTATAACTATTCATGT
TTGTCAAATTTAAGAGACAAACTTTAATTTAATCAAAAACGGTTAAAAGAAATGCTTTTCTTCCG
AAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTAGTGCCCAATCATGAAA
ACAATGGAGACTATTACAAGAATCAAAGCTGGCCTCATTTAAGGGATGAAATTTAATTTTAAGGA
AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACACCAATATCATTTATCCTAATAAGGA
GAATATGTTTATAGTGCCTAAACGCAAAATGAATGAAGATCATTACCAGAATCTATGTTTATGAC
AGTTGAGGCGTGAACGCTTTGCAAAAATTGGTAGGAATATATGGTGCCTAATCTTGAAAAGAATG
CGGATTAGTATGACTATTCATATTTGTGTCATTTTAAAGATA
Found at i:424001 original size:467 final size:469
Alignment explanation
Indices: 422857--424221 Score: 1595
Period size: 467 Copynumber: 2.9 Consensus size: 469
422847 AAACTTTGAT
* * ** * * * * *
422857 TCTATCAAAAACGGTTAAAAGAAACGTTTTTCTTACGACACCAACGTGTCAATGTCATGTATCCT
1 TCTATCAAAAACGGTTGAAAGAAATGCATTTCTTTCGAAACCAAAGCGTCAAGGTCATGTATCCT
* * * **
422922 ATTGAATGGAATGTGTTTTTGGTTCCCAATCATGAAAGGAATGGAAACTATTACGAGAATCAATG
66 AATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGTGACTATTACGAGAATCAATG
* * *
422987 CTTGCTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCCA-AG
131 CTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATA-
* * * * * *
423051 GAAAAGAAAATCAATAAATATCATTTATCCTAA-AGAGGAGAATGTTTTTATAGTGAGTAATCAC
195 CAAAAGAAAATC-ATCAATATC-TTTATCCTAATA-AGGAGAATGTGTTTGTAGTGCGTAATCAG
** * ** ** * *
423115 AAAGCGAATGAAGATCATTACAAAAATCCCTG-TTCACCATAATTGAGGTACGAACTTAGACTTT
257 AAAATGAATGAAGATCATTACAAGAATCTATGTTTGTCC-CAATTGAGGCACGAACTTAGACTTT
* * * * * * * * * *
423179 --AGTAAGATTTGAGAGAAGAAAGCCTTTCTTACAAAACCAAAGCATTAATATCGTATATACTTC
321 ACAG-AA-A-TTGGGGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCAGTATCGTGTATCCTTA
* * * * * * *
423242 TGGGAAGGCTAATTTTATGGTGCCTATTCTTGAAAAGAATAGGGATTAGTGTAACTATTCATGTT
383 TGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGACTAGTATAACTATTCATGTT
* * *
423307 TTTCAAATTTAAGAGTCAAACTTTAA
448 TGTCAAATTTAAAAGGC-AA---TAA
* ** * *
423333 TTCTATCAAAAATGGTTGAAAGAAATGTTTTTCTTTCGAAACCAATGCATC-AGTGTCATGTATC
1 -TCTATCAAAAACGGTTGAAAGAAATGCATTTCTTTCGAAACCAAAGCGTCAAG-GTCATGTATC
* * *
423397 TTGATGAAAGGAATGTGTTTTTAGTTCCCAATCATGAAAAGAATGGTGACTATTACGAGAATCAA
64 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGTGACTATTACGAGAATCAA
* * * *
423462 TGCTTGCCTCATTTAAGGGATTAAATTTAATTTTAAGGAAAATAGGGCAAAGAAACGATTTCCAT
129 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
* *
423527 GCAAAAGAAAATCACCAATATCTCTTATCCTAATAAGGAGAATGTGTTTGTAGTGCGTAATCAGA
194 ACAAAAGAAAATCATCAATATCT-TTATCCTAATAAGGAGAATGTGTTTGTAGTGCGTAATCAGA
*
423592 AAATGAATGAAGATCATTACCAGAATCTATGTTTGTCCCAATTGAGGCACGAACTTAGACTTTAC
258 AAATGAATGAAGATCATTACAAGAATCTATGTTTGTCCCAATTGAGGCACGAACTTAGACTTTAC
* *
423657 AGAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAGCCAATGCATCAGTATCGTGTATCCTTATAAG
323 AGAAATTGG-GGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCAGTATCGTGTATCCTTATGAG
*
423722 AAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGACTAGTATGACTATTCATGTTTGTC
387 AAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGACTAGTATAACTATTCATGTTTGTC
**
423787 TTATTTAAAAGGC-A-AA
452 AAATTTAAAAGGCAATAA
*** *
423803 -C-ATCAAAAACGGTTGAAAGAAATGCATTTCTTGT-GGCCCCAAAGCGTCAAGGTCGTGTATCC
1 TCTATCAAAAACGGTTGAAAGAAATGCATTTCTT-TCGAAACCAAAGCGTCAAGGTCATGTATCC
* * * *
423865 TAATGAAAAGAATATGTTTTTGGTTCCCAACCATGAAAAGAATGGTGAC-AGCTACGAGAATCAA
65 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGTGACTA-TTACGAGAATCAA
* * *
423929 TGGTTGCCTTATTTAAGGGATGATCTTTAATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCCAT
129 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
* * * *
423994 ACAAAAGAAAATCATCAATATCTTTTATCCCAATAAAGAGAATGTGTTTGTAGTGCCTAATTAGA
194 ACAAAAGAAAATCATCAATATC-TTTATCCTAATAAGGAGAATGTGTTTGTAGTGCGTAATCAGA
** * *
424059 AAATGAATGAAGATCATTATTAGAAT-TCATGTTTGTCCCAATTAAGGCACGAAATTAGACTTTA
258 AAATGAATGAAGATCATTACAAGAATCT-ATGTTTGTCCCAATTGAGGCACGAACTTAGACTTTA
* * * *
424123 CAGAAATTGAGGGGAACAAAGCCTTTCTTGCGAAGCTAAAGCGTCAGTATCATGTATCCTTATGA
322 CAGAAATTG-GGGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCAGTATCGTGTATCCTTATGA
424188 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAG
386 GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAG
424222 CATCACATAT
Statistics
Matches: 768, Mismatches: 106, Indels: 38
0.84 0.12 0.04
Matches are distributed among these distances:
466 2 0.00
467 366 0.48
468 6 0.01
470 2 0.00
474 1 0.00
475 4 0.01
476 201 0.26
477 184 0.24
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (469 bp):
TCTATCAAAAACGGTTGAAAGAAATGCATTTCTTTCGAAACCAAAGCGTCAAGGTCATGTATCCT
AATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGTGACTATTACGAGAATCAATG
CTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATAC
AAAAGAAAATCATCAATATCTTTATCCTAATAAGGAGAATGTGTTTGTAGTGCGTAATCAGAAAA
TGAATGAAGATCATTACAAGAATCTATGTTTGTCCCAATTGAGGCACGAACTTAGACTTTACAGA
AATTGGGGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCAGTATCGTGTATCCTTATGAGAAGA
CTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGACTAGTATAACTATTCATGTTTGTCAAAT
TTAAAAGGCAATAA
Found at i:425365 original size:22 final size:22
Alignment explanation
Indices: 425287--425365 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
425277 TTATTTGACA
* *
425287 AAGGGGGAGAAATGCTTTGATT
1 AAGGGGGAGAAATTCTTTAATT
** *
425309 AAGGGGGAGATTTTCTTTATTTTCTT
1 AAGGGGGAGAAATTCTTTA----ATT
* *
425335 AAAGAGGAGAAATTCTTTAATT
1 AAGGGGGAGAAATTCTTTAATT
425357 AAGGGGGAG
1 AAGGGGGAG
425366 TAAAACGAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
22 24 0.59
26 17 0.41
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.33
Consensus pattern (22 bp):
AAGGGGGAGAAATTCTTTAATT
Found at i:425927 original size:13 final size:13
Alignment explanation
Indices: 425909--425935 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
425899 ACATTATGCT
425909 TTGTATCGATACA
1 TTGTATCGATACA
425922 TTGTATCGATACA
1 TTGTATCGATACA
425935 T
1 T
425936 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:425965 original size:20 final size:19
Alignment explanation
Indices: 425919--425975 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
425909 TTGTATCGAT
425919 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
425938 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
425957 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
425976 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:426043 original size:13 final size:13
Alignment explanation
Indices: 426025--426073 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
426015 CATGGGATAA
426025 TGTATCGATACAT
1 TGTATCGATACAT
426038 TGTATCGATACA-
1 TGTATCGATACAT
426050 TG-AT-GA-A-AT
1 TGTATCGATACAT
426059 TGTATCGATACAT
1 TGTATCGATACAT
426072 TG
1 TG
426074 CTTGTAACGG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 1 0.03
9 3 0.10
10 4 0.13
11 4 0.13
12 3 0.10
13 16 0.52
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:426046 original size:33 final size:34
Alignment explanation
Indices: 426004--426073 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
425994 CTACCACTGT
426004 TTGTATCGATACATG-GGATAA-TGTATCGATACA
1 TTGTATCGATACATGAGGA-AATTGTATCGATACA
*
426037 TTGTATCGATACATGATGAAATTGTATCGATACA
1 TTGTATCGATACATGAGGAAATTGTATCGATACA
426071 TTG
1 TTG
426074 CTTGTAACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 17 0.50
34 17 0.50
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (34 bp):
TTGTATCGATACATGAGGAAATTGTATCGATACA
Found at i:431717 original size:476 final size:475
Alignment explanation
Indices: 426811--434732 Score: 8448
Period size: 476 Copynumber: 16.6 Consensus size: 475
426801 TTCAAATTTA
* ** * *
426811 TGGGAAGAAAGCCTTTCTTATGAAATAAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* * ** * * * *
426876 TTTATGGCGCCTAATTCTGAAAAGAATTAGGATAAATATGACTATTAATGTTTGTATCT-TTTAA
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT-TATTTAA
* * * **
426940 GAGACAAACTTTGATTCTATCAAAAACGGCTT-AAAGAAATGCTTTTCTTGTGTTCCCAAAGCAT
130 GAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCG-ACACAAAGTGT
* ** * **
427004 CAATGTCATGTATACTAATGAAAGGAATGTGTTTTTGGTTCCCAAAAATGAAAAAAATGGAGGTT
193 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACT
* *
427069 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGTAAC
258 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAA
* * * *
427134 GAAAAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATCTTAAAGAGGAGAATATGTTTAT
323 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * * * * * *
427199 AGTGCCCAATCATAAAAAGAATAAAGATCATTACTAGAATCTATATTTGTCATAGTTAAGGCATG
388 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACG
**
427264 AACTTAGGGTTTACAAAAATTGG
453 AACTTAGACTTTACAAAAATTGG
* * *
427287 TGGGAGGAAAGCCTTTCTTACGAAACCAATGCTTCAATATCATGTATCCTTATTAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* *
427352 TTTATGGTGCATAGTCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * *
427417 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGTGACACCAAAGCGTCA
131 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGTGTCA
* * * * * *
427482 ATGTCATGTAACCTATTGAATGGAATGTGTTTTTGGTTCTCAATCATGAAAGGAATAGAGACTGT
195 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGT
* * * * * * *
427547 TATGAGAATCAACGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAATGAAAATAGAGAAAAGA
260 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGA
* * * * *
427612 AAAGATTTCTAAGCAAAA-AAAATCAAT-AATATCATTTATCCTATTGAGAAGAATGTTTTTATA
325 AAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
** ** * ** *
427675 GTGTGTAATCACAAAGCGAATGATGATCA--A--A-AATCCATGTTCATCACAATTGA-GCACTA
389 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGA
*
427734 ACTTAGACTTTA-ACAAAATT-T
454 ACTTAGACTTTACA-AAAATTGG
* * * * * ** *
427755 TAGGGTAGAAAGCCTTTCTTATGAAAGCAAAGCATT-AGTATCGTATATCCTTATGGGAAAACTA
1 T-GGGAAGAAAGCCTTTCTTACGAAACCAAAGC-TTCAATATCGTGTATCCTTATTAGAAGACTA
* ** * * **
427819 AGTTTATGGTGCCT-TTCCTGAAAAGAATGGCAATTATTATTACTATTCATGTTTTGTCTTGGTT
64 AGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG-TTTGTCTTATTT
* * *
427883 AATAGACAAACTTTGATTCTACCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAATGTG
128 AAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGTG
* * * * * * *
427948 CCAATGTCATGTATCCTAATGAAATGAATGTGTTTCTT-ATTCCTAGTCATGAAATGAATAGAGA
192 TCAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TTGGTTCCCAATCATGAAAAGAATGGAGA
* * * * *
428012 CTATTACGAGAATTAATGCTTGCCTTATTTAAGGGATGGACTTTAATTTTAAGGAAAATAAGGTA
256 CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCA
428077 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-ATGGAGAATGTGTT
321 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTT
* * * * *
428141 TGTACTGCCTAATCAGAAAATGACTGAA-ATCATTACTAGAATCCATGTTTGTCTCAATTGAGGC
385 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGC
* **
428205 ACGAACATAGACTTTACAAAAATTTA
450 ACGAACTTAGACTTTACAAAAATTGG
* * * * * *
428231 TAGGAAGAAAGCCTTTCTTACGAAACAAAAGCATCAATATCATGCATCCTTATGAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* * * * * * * *
428296 TTTATGGTGCCAAATTCTGAAAAGAATTGGGATAAGTAAGACTATTAATGTTTGTATCT-TTTAT
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT-TATTTAA
** * * * *
428360 GAGACAAACTTCAATTCTATCAAAAACGGCTT-CAA-AAATGCTTTTCTTGTGTCGCCAAAGCT-
130 GAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGAC-ACAAAG-TG
* * * * * * *
428422 TCAATGTCATTTATACTAATGAAAGGAATGCGTTTTTGGTTCCCAATAATGAAAAAAATGAAGGC
192 TCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGAC
* * * *
428487 TGTTACAAGAATCAATGCTTGCCTTATTTGAGGGATGAACTTTAGTTTTAAGGAAAATAGGGTAA
257 TGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAA
* * * ** * * *
428552 CGAAAAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATCTTAAAAAGGAGAATATATTTG
322 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * *** *
428617 TAGTGCCCAATCACAAAAAGAGTGAAGATCATTACTAGAATCTATATTTGTCATTGTTGAGGCAT
387 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCAC
*
428682 GAACTTAGGCTTTACAAAAATTGG
452 GAACTTAGACTTTACAAAAATTGG
* *
428706 TGGGAAGAAAGCCTTTCTTACGAAACCAATGCTTCAATATCATGTATCC-TATTAGAAGACT-AG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
428769 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * ** * *
428834 AGATAAACTTTGATTTTATCAAAAACGACTGAAA-AAATGCTTTTCTTGTGACACCAAAGCGTCA
131 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGTGTCA
* * * * * * * * ** *
428898 ATGTCATGTACCCTATTGAATGGAATGCGTTTTTGGTTCTCGATCGTGAAAGGAATAAAGACTAT
195 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGT
* * * *
428963 TATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAATGAAAATAGGGCAAAGA
260 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGA
* * ** * * *
429028 AAAGATTTTCAAGTGAAAGAAAATCAAT-AATATCATTTATCCTAATGAGGGGAATGTTTTTATT
325 AAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
*** ** * * * *
429092 GTAAGTAATCACAAAGCGAATGAAGATCATTACTAAAATCCATGTTTGTCATAGTGGAGGCACGA
389 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGA
*
429157 ACTTAGACTTTA-ACAAAATTTG
454 ACTTAGACTTTACA-AAAATTGG
* * * * * *
429179 AGGTAACAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTATATCCTTATT-GAAAGACTAA
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAG-AAGACTAA
*
429243 GTTTATGGTGCC-AATTCTAGAAAAGAATGGGGATTAGTATGACTATT-ATTGTTTGTCTTATTT
65 GTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCA-TGTTTGTCTTATTT
* * * *
429306 AAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCTTGCAACACCTATGTG
128 AAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGTG
* * * * * * *
429371 TCAACGTCATGTATCCTAATGAAAAGAATATGTTTTTGGTTCCTAATCGTG-AAAGAAAGGTGAC
192 TCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGAC
* * * * * *
429435 TATTACAAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTCTAAGGAAACTAGAGCAA
257 TGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAA
* * * * * *
429500 AGAAATGATTTTCACGCAAAAGAAATTCATCAATATCGTTTAT-CTGAATAAGGACG-ATGTGTT
322 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGA-GAATGTGTT
* * * * ** *
429563 TGTGGTGCCTAATCACAAAATGATTGGAGATCATTACTAGCTTCCATGTTTGTCCCAATTGAGGC
385 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGC
*
429628 ACGAACTTAGACTTTACAAAAATTGAC
450 ACGAACTTAGACTTTACAAAAATTG-G
** * * * * * * * * *
429655 AAGG-AGAAGGCCTTTCTCACGAAACCGAAGCATCAATACCATATTTCCTTATGAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* * * * *
429719 TTTATGGTGCCTATTCTTGAAAAGAATAGGGACTAGTATGACTATTCATGTTTGTCTTATTTAAA
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * * * *
429784 AGGCAAA-ATTGATTCTATCAAAAATGGTTGAAAGAAATGCATTTCTTGTGGCCCCAAAGCGTCA
131 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTG-CGACACAAAGTGTCA
* * * * * * * *
429848 AGGTCATGTATCCTAATGAAAGGATTATGTTTTTGGTTCCCAACCATGAAAAGAATTGTGACAGC
195 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGT
* *
429913 TACGAGAATCAATGGTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGCAAAATAGGGCAAAGA
260 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGA
* * * *
429978 AAATATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATAAAGAGAATGTGTTTATAG
325 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * * * *
430043 TGCCTAATCAGATAATGAATGAAGATCATTATTAGAATCTATGTTTGTCCCAATTGAGGTAGGAA
390 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAA
* *
430108 ATTAGACTTTACAGAAATTGAG
455 CTTAGACTTTACAAAAATTG-G
* * * * * *
430130 -GTGAAGAAAGCCTTTCTTGCGAAGCTAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* * *
430194 TTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGATTATTCATGTTTATCTTATTTAAG
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * *
430259 AGACAAACTTTAATT-TAATCGAAAACGGTTGGAAGAAATGTTTTTCTTACGACACCAAAGTGTC
131 AGACAAACTTTGATTCT-ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGTGTC
*
430323 AATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCGCAATCATGAAAAGAATGGAGACTG
194 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTG
* * * * * *
430387 TTACAAGAATCAATGCTTACTTTATTTAAGAGAT-AGCTTTAATTTTAAGGAAAATGGGGCAAAG
259 TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAG
* * * * * *
430451 ATATGATTTCCATGTAAAAGAAAATGATCAATATCATTTATTCC-AATGAGGAGAGTCTGTTTAT
324 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA-TCCTAATGAGGAGAATGTGTTTAT
* * * **
430515 AGTGCCTAATCAC---TTGAATGAAGATCATTTCTAGAATCAATGTTTGTCACTGTTGAGGCACG
388 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACG
*
430577 AACTTAGGCTTTACAAAAATTGG
453 AACTTAGACTTTACAAAAATTGG
* * * * * *
430600 TGGGAAGAAAGCCTTTCTCATGAAATCAATGTTTCAATATCGTGTATCCCTATTAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* ** * * * *
430665 CTTACAGTGCCTAATCCTAAAAAGAATGGGGAATAGTATGACTATTTATGTTTGTCTTATTTTAG
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * ** *
430730 AGACAAACTTTAATTCTATAAAAAATGGCAGAAAGAAATGCTTTTCTTGC-AGCAAAAAAGTGTC
131 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-C-ACAAAGTGTC
* * * *
430794 AATGTCATGTATCTTAATGAAAGGAAAGTGTTTTTGGTTCCCAATCATGAAAAGAATGGTGACTA
194 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTG
* * * *
430859 TTACGAGAATCAGTGCTTGCCTTGTTTAAGGGATGAACTTTAATTGTAAGGAAAAGAGGGCAAAG
259 TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAG
* * *
430924 AAAATATTTCCAT-CAAAAGAAAATCATCAATATC-TTCTATCCTAATAAGGAGAATGTGTTTGT
324 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT-TATCCTAATGAGGAGAATGTGTTTAT
* * ** *
430987 TGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCAC-
388 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACG
* * * *
431051 AAATTATACTATAAAAAAATTGG
453 AACTTAGACTTTACAAAAATTGG
* * *** * ** * *
431074 TGGGAAGAAAGCCTTTCTTGCTAAGTGAAAGCATCAGGATCGTGTATCCTTATGAGAAAACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* * * * *
431139 TTCATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGATTATTCATGTTTATCTTATTTAAG
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * ** * * *
431204 AGACAAACTTTCATTCAATCAAAAACGACTAAAAGAAATGCTTTTCTTGTGACACAAATGTATCA
131 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACAAA-GTGTCA
* * * * *
431269 ATGTCATGTATCTTAATGAATGGAATCTGTTTTTGGTGCCCAATCATGAAAAAAATGGAGACTGT
195 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGT
* * * *
431334 TACAAGAATCAATGCTTGCCTTATTTAAGGGGTGAACTTTAATTTTAAGGAATATAGGGCAACGA
260 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGA
* * * * * * *
431399 AAAGATTTCAATACAAAAGAAAAACTTCAATATCATTTATCCTAATGTGGAAAATATGTTTATAG
325 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* *
431464 TGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACAAA
390 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAA
*
431529 CTTAGGCTTTACAAAAATTGG
455 CTTAGACTTTACAAAAATTGG
** * * *
431550 TGCAAAAAAAGCCTTTCTTAAGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
* *
431615 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTTATG
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
431680 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACCCCAAAGTGCCA
131 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-CACAAAGTGTCA
* * * * *
431745 ATGTCATGTAT-CTAATTG-AATGATATTTGTTTTTCGTTTCCAATCATGAAAGGAATGGAGACT
195 ATGTCATGTATCCTAA-TGAAAGGA-ATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACT
* * * * *
431808 ATTATGAGAATCAATGATTGCCTTATTTAAGGGATGAACTTTCATTTTAAGGAAAATAAGGCAAA
258 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAA
* * * * *
431873 GAAAAGGTTTCCAAGGAAAAGAAAATCAAT-AATATCATTTATCCATTAA--AGGAGAAAGTTTT
323 GAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCC--TAATGAGGAGAATGTGTT
* * * * * **
431935 TATAGTACGTAATCACAAAGTGAATGACGATC---A-GA-AATCCATGTTCATCACAATTGAGGC
385 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGC
* * *
431995 TCTAACTTAGACTTTA-ACAAAATTTG
450 ACGAACTTAGACTTTACA-AAAATTGG
* * * *
432021 AGGGAAGAAAGCCTTTATTACGAAACCAAAGAATT-AATATCGCAT-TATCCTTA-TGGCAAGAC
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAG-CTTCAATATCG--TGTATCCTTATTAG-AAGAC
* * * ** * * *
432083 TAAGTTTATGGTGCCTATTCCTGAAAATAATGGGTATTACAATTACAACTCATGTTTGTCTTATT
62 TAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
432148 TAAGAGACAAACTTTGATACTACCAAAAACGGCTGAAAGAAATGCTTTTCATGCGACACCAATGT
127 TAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGT
* * * *
432213 GTCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATTATGAATAGAATGGTGA
191 GTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGA
* * *** * *
432278 CTATTATGAGAATCAATGCTTGCCTTATTTAACAAATGAACTTTAATTTTAAGGAGAATACGGCA
256 CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCA
* * * * *
432343 AAGAAAAGATTTCCATTCAAAAGAAAATCATCAATATCTTTTACCCTGAA-AAGGAGAATGTATT
321 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTT
* * * * *
432407 TGTAGTGCCTAACCAGAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCCCAATTGAGGC
385 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGC
* * * *
432472 ACAAACTTAGACTTTATAGAAATTAG
450 ACGAACTTAGACTTTACAAAAATTGG
* * * * *
432498 TGGGAAGAAAGCCTTTCTT-GGAAAGCCAAAGCATCAGTATCGTGTATCATTATGAGAAGACTAA
1 TGGGAAGAAAGCCTTTCTTACGAAA-CCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAA
* * *
432562 GTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGATTATTCATGTTTGTCTTATTTAA
65 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * **
432627 GAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATACTTTTCTTGC-AGCATCAAAGCAT
130 GAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-CA-CAAAGTGT
* * ** *
432691 CAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTGCCCAATCATGAAACCAATGGAGATT
193 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACT
* * * *
432756 GTTACAAGAATCAATGCCTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAC
258 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAA
* * * * *
432821 GAAAAGATTTCCATGTAAAAGAAAAACTTCAATATCATTTATCCTAGTGAGGAGAATATGTTTAT
323 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * * * *
432886 AGTGCCTAAACACAAAATTAATGAA-AGTCATTACTAGAATCTATATTTATCATAGTTGATGCAC
388 AGTGCCTAATCACAAAATGAATGAAGA-TCATTACTAGAATCCATGTTTGTCACAATTGAGGCAC
* * *
432950 AAACTTAGGCTTTGCAAAAATTGG
452 GAACTTAGACTTTACAAAAATTGG
* * * * * * *
432974 TGGGAATAAAGCCTTTCTTACTAAACCAATGCTTCACTAGCATGTATCCTTATTTGAAGACTAAG
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
** * *
433039 TTTGGGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAA
66 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * *
433104 AGTCAAACTTTGATTCTATCAAAAACGG-TAAGAAGAAAAGCTTTTCTTGCGACCTCAAAGCGTT
131 AGACAAACTTTGATTCTATCAAAAACGGTTGA-AAGAAATGCTTTTCTTGCGA-CACAAAGTGTC
* * * *
433168 AATGTCATGTATCCTAATAAAAGGAATGTATTTTTGGTTCCCAATCATGAAAAGAGTGGAGACTA
194 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTG
* ** *
433233 TTACGAGAATTAATGCTTGCCTTATTTAAAAGATGAACTTTAATTTTGAGGAAAATAGGGCAAAG
259 TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAG
* * * * *
433298 AAAAGATTTTCATGCAAAAGAAAATAATCAATATCATTTACCCCAATGAGGAGAATTTGTTTATA
324 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * ** *
433363 GTGACTAATCATAAAATGAATGAAGATTATTACTAGATTCTATGCTTGTCACCGTTGAGGCATGA
389 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGA
* * *
433428 ATTTAGGCTTTACATAAATTGG
454 ACTTAGACTTTACAAAAATTGG
** * * * * *
433450 TGGGAAGAAAGCCTTT-TTCATAAAACCAATGATTCAATATCATGTATCATTTTTAGAAGACTAA
1 TGGGAAGAAAGCCTTTCTT-ACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAA
* * * *
433514 ATATATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTCATTTAA
65 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* *
433579 AAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACTAAAGTGTC
130 GAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACAC-AAAGTGTC
* *
433644 AATGTCATGTATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATG-AAAGAAATGGAGACT
194 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAG-AATGGAGACT
* * * * *
433708 ATTACGATAATCAATACTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAA
258 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAA
* * * * *
433773 GAAAAGATTTCCAAGGAAAATAAAATCAAT-AATATCATTTATCCTAAAGAGGAGAATGTTTTTA
323 GAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
** ** * * * * * * *
433837 TAGTGTGTAATCACAAAGCGAATGAAGATCATTA-AAAAACTCCCTATTCGCCATAATTGAGGCA
387 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCATGTTTGTCACAATTGAGGCA
** * *
433901 CGAACTTAGACTTTAGTATAATTTG
451 CGAACTTAGACTTTACAAAAATTGG
* * * * * * * * *
433926 AGGAAAGAAAGCGTTTCTTGCAAAACCAAAGCATT-AATATCATATATCCTT-CTAGGAAGGCTA
1 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGC-TTCAATATCGTGTATCCTTATTA-GAAGACTA
* * ** * * * **
433989 AGTTTATGGTGCTTATTGTTGAAAAGAATGGGGATTAGTGTGACTATTCAAGTTTTTCAAATTTA
64 AGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* *
434054 AGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCAACACCAATGTGT
129 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAA-----
* * *
434119 CAGTGTCATGTATCCTAAAGCGCCAATGTCTTGTGTCCTAATGAAACGAATGTGTTTTTGGTTCC
188 -A--G---TG-----T-------CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC
* * * * * * * ** *
434184 CAATTAGGAAAAAAAAGTGAGGCTGTTACGAGGATCAATGCTTGCCATATTTAAGAAAAGAACTT
235 CAATCATGAAAAGAATG-GAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTT
* * * *
434249 TAATTTTAAAGAAAATAGGGCAAAGAAAAGTTTTCTATGCAAAAGAATATCATCAATATCATTTA
299 TAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * * * * *
434314 TCTTAATAAAGAGAATGTGTTTGTAGTGCCTAATCAGAAAATGAGTGAAGATTATTACTAGAATC
364 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
434379 CATGTTTGTCCCAACTGAGGCACGAACTTAGGCTTTACAGAAATTGG
429 CATGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * * * * *
434426 AGGG-TGAAAAGCCTTTCTTGCGAAGCCAAAGCGTCAGTATCCTATATCCTTATGATAAGACTAA
1 TGGGAAG-AAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAA
* * * * * *
434490 GTCTATGGTGCCTAATCCTAAAAAGAATAGGAAATAGTATGATTATTCATGATTT-TCTTATTTA
65 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG-TTTGTCTTATTTA
* * * * *
434554 AGAGATAAACTTTGATTCAATCAAAAACAGTTGAAAGAAATGCTTTTCTTGCGGCACCAAAGCGT
129 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-CAAAGTGT
* * * * *
434619 TAATGTCATGTATCTTAATGAAAGGAATTTGTTTTTGGTGCCCAATCATGAAAAAAAATGGAGAC
193 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATG-AAAAGAATGGAGAC
* * * *
434684 TGTTGCAAGAATCAATGCTTGCTTTATTTAAGGGATAAACTTTAATTTT
257 TGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT
434733 TCGAAAAAAG
Statistics
Matches: 6167, Mismatches: 1129, Indels: 299
0.81 0.15 0.04
Matches are distributed among these distances:
468 34 0.01
469 282 0.05
470 75 0.01
471 320 0.05
472 428 0.07
473 427 0.07
474 731 0.12
475 1199 0.19
476 2096 0.34
477 177 0.03
478 12 0.00
482 1 0.00
484 2 0.00
487 2 0.00
489 1 0.00
492 2 0.00
494 1 0.00
499 50 0.01
500 320 0.05
501 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGAAGACTAAG
TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACAAAGTGTCAA
TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTT
ACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAC
TTAGACTTTACAAAAATTGG
Found at i:436889 original size:476 final size:477
Alignment explanation
Indices: 435848--444200 Score: 8570
Period size: 476 Copynumber: 17.7 Consensus size: 477
435838 GTATCGTATG
* * * * * *
435848 TCCTGAAAAGAATAGGGATTAGTATGACTGTTTAGGTTTGTCTCATTTAAGAGATAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
435913 TCTATCAAAAACGGTTGAAAAAAAATGCTTTTCTTGCGACACGAAATCGTCAATGTCATGTATCT
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* ** * * * ** * * * *
435978 TATTGAGTGGAAGGCGTTTTTAGTTCCCTTTAATG-AAAGTAATAGAGACTATTATGAGAATCAA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAG-AATGGAGACTGTTACGAGAATCAA
* * * * * *
436042 TGCTTGGCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGAGAAAAGAAAAGATTTTCAA
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * * **
436107 GCAAAAGGAAAA-CAAT-AATATGATTTATCCTAATGAG-GAGAATGTTTTTATTGTGAGTAATC
260 GCAAAA-GAAAATC-ATCAATATCATTTATCCTAATAAGAG-GAATGTGTTTATAGTGCCTAATC
*** * *
436169 ACAAAGCAAATGAAGATCATTACTAAAATCCATG-TTGTCATAATTGAGGCACGAACTTAGACTT
322 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTT
* * * * * * *
436233 TA-ACAAAATTTGAGGGAAGAAAACCTTTCTTATGAAACCAAAACGTCAATATCGTATATCCTTA
387 TACA-AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTA
*
436297 -TAGGAAGACTAAGTTTATGGTGCCTAT
451 TTA-GAAGACTAAGTTTATGGTGCCTAA
* * * *
436324 TCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGATACACACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
436389 TCTATCAAAAAAGAGTAG-AAAGAAATGCTTTTCTTGTGACCCCAAAGCGTCAATGTCATGTATC
66 TCTATCAAAAACG-GTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATC
* * * ** **
436453 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATAATGAAAAAAATGGAGACTGTCACGCTAATCCT
130 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * * * *
436518 TGCTTGCCTTATTTAAAGGATGAGCTTCAATTTTAAGGAAAATACGACAAAGAAAAGATTTTGAT
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * * * * *
436583 GCAAAAGCAGATCATCAACATCATTTATCCTGATAAGAGGAATGTGTTTATAGTGCCTAGTTAGA
260 GCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGAATGTGTTTATAGTGCCTAATCACA
* * * *
436648 AAATGAATGAAGATTATTACTAGAATCCATGTTTGTCCTAATTTAGGCACGGACTTAGACTTTAT
325 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTTTAC
* * ** * * * * *
436713 AGAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAGCCAAAGCATCAGTATCGTGTATACTTATGAG
390 AAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAG
436778 AAGACTAAGTTTATGGTGCCTAA
455 AAGACTAAGTTTATGGTGCCTAA
* * * * *
436801 TCCTAAAAAGAATAGGGATTAGTATGATTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
436866 TCAATCAAAAATGG-CGAAAAGAAATGCTTTTCTTGCG--A-C--A---TCAATGTCATGTATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * * * *
436922 TAATGAAAGGAATGTGTTTTTGGTTCTCAATAATGAAAAGAATGCAGATTGTTATGAGAATTATT
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
* *
436987 GCTTGCCTTATTTAAGTGATTAAACTTTAATTTTAA-GAAAATAGGGCAAAGAAAAGATTTTCAT
196 GCTTGCCTTATTTAAGGGA-TGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
** * ** * *
437051 ATAAAAGAAAATGATCAATATCATTTATCCT--TGTGAGGAGAGTTTGTTTATAGTACCTAATCA
260 GCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGA-A-TGTGTTTATAGTGCCTAATCA
* * * ** *
437114 CAAAATGAATGAAGATCATTATTAGAAACAATGTTTGTCAC-CGTTGAGGCACGAACTTAGGCTT
323 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACGAACTTAGACTT
* * * * * ** *
437178 TACAAAAATTGGTGGGAAGAAAGCCTTCCTCAAGAAACC-AA-TTTCCATATTTTGCATCCTTAT
387 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTAT
437241 TAGAAGACTAAGTTTATGGTGCCTAA
452 TAGAAGACTAAGTTTATGGTGCCTAA
* * **
437267 TCTTGAAAAGAGTGGGGATTAGTATG---A--C---TTTGTCCCATTTAAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
437324 TCCATCAAAAATGGTTGAAAA-AAATGCTTTTCTTGCGACACCAAATCATGAATGTCATGCATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * * *
437388 TATTGAATGGAATGTGCTTTTAGTTCCCAACCATG-AAAGTAATAGAGACTGTTACGAGAATCAA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAG-AATGGAGACTGTTACGAGAATCAA
* * *
437452 TGCTTGGCTTATTTAAGGGATGAACTTTGATTTT-AGGAAAAGTAGGGAAAAGAAAAGATTTTCA
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTTCA
* * * * * * **
437516 AGCAAAAGAAAAACAAT-AATATGATTTATCCTAATGAG-GAGAATGTTTTTATTGTGAGTAATC
259 TGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGAG-GAATGTGTTTATAGTGCCTAATC
*** * * *
437579 ACAAAGCAAATGAAGATCTTTACTAAAATCCATG-TTGTCATAATTGAGGCACGAACTTTA-ACT
322 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAAC-TTAGACT
* * ** * * * *
437642 TTA-ACAAAGTTTGAAGGAAGAAAACCTTT-TTGACGAAACCAAA-ATGTCAATATCATATATCC
386 TTACA-AAAATTGGTGGGAAGAAAGCCTTTCTT-ACGAAACCAAAGCT-TCAATATCGTGTATCC
* ** * *
437704 TTGTGGGAGGACTAAGTTTATGGTGCCTAT
448 TTATTAGAAGACTAAGTTTATGGTGCCTAA
* * **
437734 TCTTGAGAAA-AATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACACGCTTTGA
1 TCCTGA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
** * * * * *
437798 TTCTATCAAAAAATAGTAG-AAAGAAATGCTTTTCTTGCAACCCCAAAGCATCAATGCCATGTAT
65 TTCTATC-AAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTAT
* * * ** *
437862 CCTAAGGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGCTAATCC
129 CCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCA
* *
437927 TTGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGA
194 ATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * * * * *
437992 TGCACAAGCAGATCATCAACATCATTTAT-CTGAATAAGAGGAATGTATTTGTAGTGCCTAGTCA
259 TGCAAAAGAAAATCATCAATATCATTTATCCT-AATAAGAGGAATGTGTTTATAGTGCCTAATCA
* * *
438056 GAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTGACC--GTTGAGGCACGAACTTA-AGC
323 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT--CCTAATTGAGGCACGAACTTAGA-C
* * * * * * * *
438118 TTTGCAAAAATTGGTGGGAAGAAAGCCTTCCTCATGAAACC-AA-TTTCCATATTGTGCATCCTT
385 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTT
438181 ATTAGAAGACTAAGTTTATGGTGCCTAA
450 ATTAGAAGACTAAGTTTATGGTGCCTAA
** *
438209 TCCTGAAAAGAGCGGGGATTAGTATG---A--C---TTTGTCTCATTTAAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
438266 TCCATCAAAAACGGTTGAAAA-AAATGCTTTTCTTGCGACACCAAATCGTGAATGTCATGCATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * * * *
438330 TATTGAATGGAATGTTTTTTTAGTTCCCAATCA-GGAAAGTAATAGAGACTGTTATGAGAATCAA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAG-AATGGAGACTGTTACGAGAATCAA
* * *
438394 TGCTTGGCTTATTTAAGGGATGAACTTTGATTTT-AGGAAAAGTAGGGAAAAGAAAAGATTTTCA
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTTCA
* * * * * * **
438458 AGCAAAAGAAAAACAAT-AATATGATTTATCCTAATGAG-GAGAATGTTTTTATTGTGAGTAATC
259 TGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGAG-GAATGTGTTTATAGTGCCTAATC
*** * * *
438521 ACAAAGCAAATGAAGATCTTTACTAAAATCCATG-TTGTCATAATTGAGGCACGAACTTAGACTT
322 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTT
* ** * * * * * *
438585 TA-ACAAAATTTGAAGGAAGAAAACCTTTCTTATGAAACCAAAACATCAATATCATATATCCTTA
387 TACA-AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTA
** * * *
438649 TGGGAATACTAAGTTTATGGAGCCTAT
451 TTAGAAGACTAAGTTTATGGTGCCTAA
* * * *
438676 TCTTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACACACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
438741 TCTATCAAAAAACAG-T----AG--A-----------C--C-CCAAAGCATCAATGCCATGTATC
66 TCTATC-AAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATC
* ** *
438785 CGAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGGAAAA-AATGGAGACTGTTACGCTAATCC
130 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCAT-GAAAAGAATGGAGACTGTTACGAGAATCA
* * *
438849 TTGCTTACCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGA
194 ATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * * * * *
438914 TGCAAAAGCAGATCATCAACATCATTTATCCTAATAAGAGGAATGTGTTTGTATTGCCTAGTCAG
259 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGAATGTGTTTATAGTGCCTAATCAC
* * *
438979 AAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCAC-CATTGAGGCACGAACTTAGGCTTT
324 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACGAACTTAGACTTT
* * * * * * * * *
439043 GCAAAAATTGGTGGCAAGAAAGCCTTCCTCATGAAA-CAAA-TTTCCATATTGTGGATCCTTATT
388 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATT
* *
439106 AGAAGACTAAGTTTATGGTGTCTAC
453 AGAAGACTAAGTTTATGGTGCCTAA
* * * *
439131 TCTTGGAAAGAATGGGGATTAGTATG---A--C---TTTGTCTCATTTAAGAGATAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
439188 TCCATCAAAAACGGTTGAAAA-AAATGCTTTTCTTGCGACACCAAATCGTGAATGTCATGCATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * *
439252 TATTGAATGGAATGTGTTTTTAGTTCCTAATCATG-AAAGTAATAGAGACTGTTACGAGAATCAA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAG-AATGGAGACTGTTACGAGAATCAA
* * * * * *
439316 TACATGGCTTGTTTAAGGGATGAACTTTGATTTT-AGGAAAAGTAGGGAAAAGAAAAGATTTTCG
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTTC-
* * * * * *
439380 A-GCAAAAGAAAAACAAT-AATATGATTTAACCTAATGAG-GAGAATGTTTTTATTA-TGACTAA
258 ATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGAG-GAATGTGTTTA-TAGTGCCTAA
*** * *
439441 TCACAAAGCAAATGAAGATCATTACTAAAATCCATG-TTGTCATAATTGAGGCACGAACTTAGAC
320 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGAC
* ** * * * * *
439505 TTTA-ACAAAATTTGAAGGAAGAAAACCTTTCTTACGAAACCAAAACGTCAATATCATATATCCT
385 TTTACA-AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCT
** *
439569 TATGGGAAGACTAAGTTTATGGTGCCTAT
449 TATTAGAAGACTAAGTTTATGGTGCCTAA
* * **
439598 TCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACACGCTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
439663 TCTATCAAAAAACAGTAG-AAAGAAATGCTTTTCTTGCAACCCCAAAGCATCAATGCCATGTATC
66 TCTATC-AAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATC
* * * ** **
439727 CTAAGGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGCTAATCCT
130 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
*
439792 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGAT
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * * * * * * *
439857 GCACAAGCAGATCATCAACATCATTTATCCGAATAAGAGGAATGTATTTGTAGTGCCTAGTCAGA
260 GCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGAATGTGTTTATAGTGCCTAATCACA
* ** *
439922 AAATGAATGAAGATCATTACTAGAATCAATGTTTGTCAC-CGTTGAGGCACGAACTTA-AGCTTC
325 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACGAACTTAGA-CTTT
* * * * * *
439985 GCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCAGTATCGTGTATCCTTATG
388 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATT
440050 AGAAGACTAAGTTTATGGTGCCTAA
453 AGAAGACTAAGTTTATGGTGCCTAA
* * * *
440075 TCCTAAAAATAATAGGGATTAGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* ** * * *
440140 TCAATCAAAAACGGTTG-AAAGAAATGCTTTTCTTATGGCACCAAAACATCAATGTCATGTATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * * * * * * *
440204 AAATGAAAGGAATTTGTTTTTGGTGCGCAATTATGAAAAAAATGGAGACTGTTATGGGAATTAAA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
* * * *
440269 GCTTACCTTATTTAAGGGATGAACTTTAATTTAAAGAAAAATAGGGCAACGAAAAG-TTTTGCAT
196 GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CAT
* * * * * * * ** * *
440333 ACAAAAGAAAAACTTCTATATCTTTTATCCTAAT-GGAGAGAATATGCCTAGATTGCCTAATCAC
260 GCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAG-GAATGTGTTTATAGTGCCTAATCAC
* * * * * *
440397 AAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCATAGTTAAGGCATGAACTTAGGCTTTA
324 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTTTA
** * * *
440462 CAAAAATTGGTGCAAAGAAAGCTTTTCTTACAAAACCAATGCTTCAATATCGTGTATCCTTATTA
389 CAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTA
*
440527 GAAGACTAAGTTTAGGGTGCCTAA
454 GAAGACTAAGTTTATGGTGCCTAA
* * * *
440551 TCCTGAAAAGAATAGGGATTCGTATGACTATTCATGTTTGTTTTATTTGAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
440616 TCTATCAAAAACGGTAG-AAAGAAATGCTTTTCTTGCGACACCAAAGGGTCAATGTCGTGTATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * *
440680 TAATGGAAA-GAATATGTTTTTGGTTCCCAATCATTAAAAGAGTGGAGACTGTTATGAGAATCAA
131 TAAT-GAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * *
440744 TGCTTGCCTT-TTTTAGGAGATGAACTTTAATTTTAAGGAAAAT-GGTGGAAAAAAAAGATTTCC
195 TGCTTGCCTTATTTAAGG-GATGAACTTTAATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTC
* * * * *
440807 ATGTAAAAGAGAATCATCAATATCATTTATCCCAAT--GAGGAGAGTATGTTTATAGTCCCTAAT
258 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGA-A-TGTGTTTATAGTGCCTAAT
* *** *
440870 CACAAAATGAAT-AAGATCATTACTA-TATCCATGTTTGTCCCCGTTAAGGCACGAACTTACG-C
321 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTA-GAC
* ** * * *
440932 TTTACAAAAACTAATGGGAAGAAAGCCTTTCTCACGAAACCAATGCTTCAATATCATGTATCCTT
385 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTT
* *
440997 ATTAAAAGAATAAGTTTATGGTGCCTAA
450 ATTAGAAGACTAAGTTTATGGTGCCTAA
** * *
441025 T-CTGGAAAAGAATTAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTTA
1 TCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * ** *
441089 CTCTATCAAATATGGCAG-AAAGAAATGCTTTTCTTGC-AGCACCAAAGTGTCAATGTCATGTAT
65 TTCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGA-CACCAAAGCGTCAATGTCATGTAT
* * * * * *
441152 CCTAATAAAAGGAATATGATTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTCACGAGAATGA
129 CCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCA
* * * * *
441217 ATGCGTGCCTTTTTTAAGAGATGAACTTTAATTTTAAGGAAAATGGGGCAAAGGAAAGATTTTCA
194 ATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * * * * *
441282 TGTAAAAGAAAATCATCAATATCATTTATCCCAACGATGA-GAGTATGTTTATTGTGCCTAATCA
259 TGCAAAAGAAAATCATCAATATCATTTATCCTAA-TAAGAGGAATGTGTTTATAGTGCCTAATCA
* * ** * ** *
441346 CAAAATGAATGAAGATCATTATTAGAATTCATGTTTGTCCTTGTTAAGGCATAAACTTAGGCTTT
323 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTTT
* ** * * * * *
441411 ACAAAAACTGGTCAGAAGAAAGCCTTTC-T-------CAATGTTTCAATATCATGTATCCTGACT
388 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATT
* *
441468 ATAAGACTAATTTTATGGTGCCTAA
453 AGAAGACTAAGTTTATGGTGCCTAA
* * * *
441493 TCCTGAAAAAAATGGAGATTAGTATGACTATTCACGTTTATCTTATTTAAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * * *
441558 TCTATCAAGAATGGTTG-AAAGAAATGCTTTTCTTACAACACCAAAGCATTAATGTCGTGTATTC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * ** * * * **
441622 TATTGAATGTAATGTGTTTTCAGTTCCTAATCGTGAAAGGAATGGAGACTGTTGTGAGAATCAAT
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
* * * * * * *
441687 GCATGCCTTATTTAAGGGACGAACTTTGATTTTGAGGAAAATAGGGCAAAGCAAAGATTTCCAAG
196 GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
* **
441752 CAAAAGAATATCAAT-AATATCATTTATCCTAAT--GAGGATAATGTGTTTATAGTGAGTAATCA
261 CAAAAGAAAATC-ATCAATATCATTTATCCTAATAAGAGG--AATGTGTTTATAGTGCCTAATCA
* ** * * **
441814 TAAAGCGAATGAAGATCATCACTAAAATCCATGTTTGTCAC-AATTGAGTTACGAACTTAGACTT
323 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACGAACTTAGACTT
* * * * *
441878 TA-ACAAAATTTGAGGGAAGAAAGCCTTTCTTAGGAAACCAAAGCATCAATATCGTATATCCTTA
387 TACA-AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTA
* * *
441942 -TAGGAAGATTGAGTTTATGGTGCCTAT
451 TTA-GAAGACTAAGTTTATGGTGCCTAA
* * * *
441969 TCCTGAAAAGATTGGGTATTAGTATGGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
442034 TCTATCAAAAACGGTTGAAAA-AAATGTTTTTCTTGCGACACCAATGGGTTAATGTCATGTATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * *
442098 TAATGAAAGGAATGTGTTTTTGGTTCCCAATGAAGAAAAGAATGGTGACTGTCACAAGAATCAAT
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
* * * * *
442163 GCTTGCCTTATTTAGGGGATAAACTTTAATTTTAAGGAAAATAGGTCAAAGAAAATATTTTAATG
196 GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
* * * * *
442228 CAAAATAAAATTATCAATATCTTTTATCCTAATAAG-GAGAATGTGTTTGTAGTGCCTAATCAGA
261 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGAG-GAATGTGTTTATAGTGCCTAATCACA
*
442292 AAAAGAATGAAGAT-ATTTACTAGAATCCATGTTTGT-CTCAATTGAGGCACGAACTTAGAGC--
325 AAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCCT-AATTGAGGCACGAACTTAGA-CTT
* * * * * * * * *
442353 CATAAAAATTGGTGTGAAGAAAGCCATTCTTGCGAAGCTAAAGCATCAGTATCGTGTATCCTTAT
387 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTAT
* *
442418 GAGAAGACTAAGTTTATGGTGCTTAA
452 TAGAAGACTAAGTTTATGGTGCCTAA
* ** * * *
442444 TCTTGAAAAGAATAAGGATTAGTATGATTATTCATGTTTGTTTTATTTAAGAGGCAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
442509 TCAATCAAAAATGGTTG-AAAGAAATGC-TTTCTTGTGGCACCAAAGCGGCAATGTCAGGTATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * *
442572 TAATGAAAGGAATTTGTTTTT-GTGCGCAATCATGGAAAA-AATGGAGACTGTTAC-AGGAACCA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCAT-GAAAAGAATGGAGACTGTTACGA-GAATCA
* *
442634 ATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTAAGGAAAATAGGGCAACGAAAAGATTTTCA
194 ATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * *
442699 CGCAAAAGAAAAACTTCAATATCATTTATCCTAAT--GAGGATAATATGTTTATAGTGCCTAATC
259 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGG--AATGTGTTTATAGTGCCTAATC
* * * * *
442762 ACAAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCATAGTTGAGGCACGAACTTAGGCTT
322 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTT
* * * * * **
442827 TACAAAAATTGCTGCGAAGAAAGCCTTTCTTATGAAACCAATGCTTCAATATCATGTATTTTTAT
387 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTAT
442892 TAGAAGACTAAGTTTATGGTGCCTAA
452 TAGAAGACTAAGTTTATGGTGCCTAA
* * * * * *
442918 TCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTCGTTTTATGTAAGTGATAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * *
442983 TCTATCAAAAACGGTAG-AAACAAATCCTTTTCTTGTGACACCAAAGCGTCAATATCATGTATCC
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
*
443047 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCAT-AAAATGTATGGAGACTGTTACGAGAATCAA
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAA-GAATGGAGACTGTTACGAGAATCAA
* * *
443111 TGCTTGCCTTTTTTAAGAGATGAACTTTAATTTTAAGGAAAATGAGGG-AAAAAAAAGATTTTCA
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTTCA
* ** * * * * * *
443175 TGTAAAAGGGAATGATCAATATCATTTACCCCAAT--GAGGAGAGTATGTTTGTAGTCCCTAATC
259 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGA-A-TGTGTTTATAGTGCCTAATC
* * * *
443238 ACAAAATGAATGAAAATCATTATTAGAATCCATGTTTGTCCCT-GTTGAGGCACGAACTTAGGCT
322 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CCTAATTGAGGCACGAACTTAGACT
* * * *
443302 TTACAAAAACTAGTGGGAAGAAAGCCTTTCTAACGAAACCAATGCTTCAATATCGTGTATCCTTA
386 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTA
443367 TTAGAAGACTAAGTTTATGGTGCCTAA
451 TTAGAAGACTAAGTTTATGGTGCCTAA
*
443394 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
443459 TCTATCAAAAATGG-TCAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTTAATGTCATGTATCT
66 TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
* * * * ** *
443523 TACTGAATGGAATGTGTTTTTGGTTTCCAATCATGAAAGGAATGGAGACCATTATGAGAATCAAT
131 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
* *
443588 GCTTGCCTTATTTAAGGGATGAACTTT-GTTTCTAAGGAAAATAGGGCAAAGAAAA-ATTTACAT
196 GCTTGCCTTATTTAAGGGATGAACTTTAATTT-TAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* *
443651 GCAAAAAAAAAAATCATCAATATCATTTATCCTAATAAGA-GAATGTGTTTATAGTGCCTAATCC
260 GC--AAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGAATGTGTTTATAGTGCCTAATCA
* * *
443715 CAAAATGAACGAAGATCATTACTAGAATCCATGTCTGTCAC-AATTAAGGCACGAACTTAGACTT
323 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACGAACTTAGACTT
* * * * * *
443779 TACAAAAGTTGGTGGAAAGAAAACCTTTCTTACGAAACAAAAGCATCGATATCGTGTATCCTTAT
387 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTAT
* * * *
443844 AAGAAGACTAAGTTTTTAGTGCCAAA
452 TAGAAGACTAAGTTTATGGTGCCTAA
* * * * * * *
443870 TCCTAAAAAGAATTGGGATTAGCT-TGACTATTAATATTTGTTTTATATAAGACACAAACTTTGA
1 TCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * *
443934 TTCAATCAAACGCGGTTG-AAAGAGATGC---TATT--GACACCAATGTGTCAATGTCATGTATC
65 TTCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATC
*
443993 CTAATGAAAGGAATGTATTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
130 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
** *
444058 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAATAAAATAGGGCAAAGAAAAGATTTCCAT
195 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * * *
444123 ACGAAAGAATATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTGTAGTGCCTAATCACA
260 GCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGAATGTGTTTATAGTGCCTAATCACA
444188 AAATGAATGAAGA
325 AAATGAATGAAGA
444201 AAGCTTTGTA
Statistics
Matches: 6490, Mismatches: 1163, Indels: 453
0.80 0.14 0.06
Matches are distributed among these distances:
446 7 0.00
447 31 0.00
450 1 0.00
451 1 0.00
452 2 0.00
455 61 0.01
456 191 0.03
457 62 0.01
458 59 0.01
459 6 0.00
460 1 0.00
461 2 0.00
463 4 0.00
464 8 0.00
465 198 0.03
466 637 0.10
467 227 0.03
468 615 0.09
469 21 0.00
470 38 0.01
471 169 0.03
472 18 0.00
473 196 0.03
474 606 0.09
475 439 0.07
476 2422 0.37
477 456 0.07
478 9 0.00
479 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (477 bp):
TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TCTATCAAAAACGGTTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATAAGAGGAATGTGTTTATAGTGCCTAATCACAA
AATGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACGAACTTAGACTTTACA
AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTATCCTTATTAGA
AGACTAAGTTTATGGTGCCTAA
Found at i:438114 original size:942 final size:940
Alignment explanation
Indices: 435848--444200 Score: 8361
Period size: 942 Copynumber: 8.9 Consensus size: 940
435838 GTATCGTATG
* * * * * * *
435848 TCCTGAAAAGAATAGGGATTAGTATGACTGTTTAGGTTTGTCTCATTTAAGAGATAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
* * * * * * * *
435913 TCTATCAAAAACGGTTGAAAAAAAATGCTTTTCTTGCGACACGAAATCGTCAATGTCATGTATCT
66 TCTATCAAAAATGGTAG-AAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* ** * * * * * ** * * *
435978 TATTGAGTGGAAGGCGTTTTTAGTTCCCT-TTAATGAAAGTAATAGAGACTATTATGAGAATCAA
130 TAATGAAAGGAATGTGTTTTTGGTT-CCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAA
* * * * * *
436042 TGCTTGGCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGAGAAAAGAAAAGATTTTCAA
194 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * **
436107 GCAAAAGGAAAA-CAAT-AATATGATTTATCCTAAT-GAGGAGAATGTTTTTATTGTGAGTAATC
259 GCAAAA-GAAAATC-ATCAATATCATTTATCCTAATAGA-G-GAATGTGTTTATAGTGCCTAATC
*** * *** *
436169 ACAAAGCAAATGAAGATCATTACTAAAATCCATG-TTGTCATAATTGAGGCACGAACTTAGACTT
320 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTT
* * * ** *
436233 TA-ACAAAATTTGAGGGAAGAAAACCTTTCTTATGAAACCAAAACGTCAATATCGTATATCCTTA
385 TACA-AAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACC--AATTTCAATATCGTGTATCCTTA
* *
436297 -TAGGAAGACTAAGTTTATGGTGCCTATTCTTGAAAAGAATGGGGATTAGTATGACTATTCATGT
447 TTA-GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC-ATT--TG-
* * * * * *
436361 TTTTCTTATTTAAGATACACACTTTGATTCTATCAAAAAAGAGTAGAAAGAAATGCTTTTCTTGT
507 ---TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTTGAAAAAAATGCTTTTCTTGC
* * *
436426 GACCCCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATAATGAA
568 GACACCAAATCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAA
** * ** ** * * *
436491 AAAAATGGAGACTGTCACGCTAATCCTTGCTTGCCTTATTTAAAGGATGAGCTTCAATTTTAAGG
633 AGTAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT-AGG
* * * * * * * * *
436556 AAAATA-CGACAAAGAAAAGATTTTGATGCAAAAGCAGATCATCAACATCATTTATCCTGAT-AA
697 AAAATAGGGA-AAAGAAAAGATTTTCAAGCAAAAGAAAAACATCAATATCATTTATCCTAATGAG
* * * * * *
436619 GAGGAATGTGTTTATAGTGCCTAGTTAGAAAATGAATGAAGATTATTACTAGAATCCATGTTTGT
761 GA-GAATGTGTTTATTGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * ** * ** *
436684 CCTAATTTAGGCACGGACTTAGACTTTATA-GAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAGC
825 CATAATTGAGGCACGAACTTAGACTTTA-ACAAAATTTGAAGGAAGAAAACCTTT-TTACGAAAC
* * * * *
436748 CAAAGCATCAGTATCGTGTATACTTATGAGAAGACTAAGTTTATGGTGCCTAA
888 CAAAACGTCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* * * * * *
436801 TCCTAAAAAGAATAGGGATTAGTATGATTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
* * *
436866 TCAATCAAAAATGG-CGAAAAGAAATGCTTTTCTTG------C-GA-CATCAATGTCATGTATCC
66 TCTATCAAAAATGGTAG-AAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* * * * * * *
436922 TAATGAAAGGAATGTGTTTTTGGTT-CTCAATAATGAAAAGAATGCAGATTGTTATGAGAATTAT
130 TAATGAAAGGAATGTGTTTTTGGTTCCT-AATCATGAAAAAAATGGAGACTGTTACGAGAATCAA
* *
436986 TGCTTGCCTTATTTAAGTGATTAAACTTTAATTTTAA-GAAAATAGGGCAAAGAAAAGATTTTCA
194 TGCTTGCCTTATTTAAGGGA-TGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
** * ** * *
437050 TATAAAAGAAAATGATCAATATCATTTATCCTTGT-GAGGAGAGTTTGTTTATAGTACCTAATCA
258 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAGAGGA-A-TGTGTTTATAGTGCCTAATCA
* * *
437114 CAAAATGAATGAAGATCATTATTAGAAACAATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTT
321 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTT
* * * * ** *
437179 ACAAAAATTGGTGGGAAGAAAGCCTTCCTCAAGAAACCAATTTCCATATTTTGCATCCTTATTAG
386 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATTTCAATATCGTGTATCCTTATTAG
* * **
437244 AAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAGTGGGGATTAGTATGAC-TTTGTCCCATTTA
451 AAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACATTTGTCTTATTTA
* * *
437308 AGAGACAAACTTTGATTCCATCAAAAATGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCAT
516 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCGT
* * * * * * * *
437373 GAATGTCATGCATCCTATTGAATGGAATGTGCTTTTAGTTCCCAACCATGAAAGTAATAGAGACT
581 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAGTAATGGAGACT
* *
437438 GTTACGAGAATCAATGCTTGGCTTATTTAAGGGATGAACTTTGATTTTAGGAAAAGTAGGGAAAA
646 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAGGAAAA-TAGGGAAAA
* *
437503 GAAAAGATTTTCAAGCAAAAGAAAAACAAT-AATATGATTTATCCTAATGAGGAGAATGTTTTTA
710 GAAAAGATTTTCAAGCAAAAGAAAAAC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
** ** * *
437567 TTGTGAGTAATCACAAAGCAAATGAAGATCTTTACTAAAATCCATG-TTGTCATAATTGAGGCAC
774 TTGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCAC
* *
437631 GAACTTTA-ACTTTAACAAAGTTTGAAGGAAGAAAACCTTTTTGACGAAACCAAAATGTCAATAT
839 GAAC-TTAGACTTTAACAAAATTTGAAGGAAGAAAACCTTTTT-ACGAAACCAAAACGTCAATAT
* * * * *
437695 CATATATCCTTGTGGGAGGACTAAGTTTATGGTGCCTAT
902 CATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* **
437734 TCTTGAGAAA-AATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACACGCTTTGA
1 TCCTGA-AAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGA
* * *
437798 TTCTATCAAAAAATAGTAGAAAGAAATGCTTTTCTTGCAACCCCAAAGCATCAATGCCATGTATC
65 TTCTATC-AAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATC
* ** **
437863 CTAAGGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGCTAATCCT
129 CTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAA
*
437928 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGAT
194 TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * * * * * *
437993 GCACAAGCAGATCATCAACATCATTTAT-CTGAATAAGAGGAATGTATTTGTAGTGCCTAGTCAG
259 GCAAAAGAAAATCATCAATATCATTTATCCT-AAT-AGAGGAATGTGTTTATAGTGCCTAATCAC
* * * *
438057 AAAATGAATGAAGATCATTACTAGAATCAATGTTTGTGACCGTTGAGGCACGAACTTAAGCTTTG
322 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTTA
* * * * *
438122 CAAAAATTGGTGGGAAGAAAGCCTTCCTCATGAAACCAATTTCCATATTGTGCATCCTTATTAGA
387 CAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATTTCAATATCGTGTATCCTTATTAGA
** *
438187 AGACTAAGTTTATGGTGCCTAATCCTGAAAAGAGCGGGGATTAGTATGAC-TTTGTCTCATTTAA
452 AGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACATTTGTCTTATTTAA
* *
438251 GAGACAAACTTTGATTCCATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCGTG
517 GAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCGTC
* * * * * * *
438316 AATGTCATGCATCCTATTGAATGGAATGTTTTTTTAGTTCCCAATCAGGAAAGTAATAGAGACTG
582 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAGTAATGGAGACTG
* * *
438381 TTATGAGAATCAATGCTTGGCTTATTTAAGGGATGAACTTTGATTTTAGGAAAAGTAGGGAAAAG
647 TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAGGAAAA-TAGGGAAAAG
* *
438446 AAAAGATTTTCAAGCAAAAGAAAAACAAT-AATATGATTTATCCTAATGAGGAGAATGTTTTTAT
711 AAAAGATTTTCAAGCAAAAGAAAAAC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
** ** * *
438510 TGTGAGTAATCACAAAGCAAATGAAGATCTTTACTAAAATCCATG-TTGTCATAATTGAGGCACG
775 TGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCACG
* *
438574 AACTTAGACTTTAACAAAATTTGAAGGAAGAAAACCTTTCTTATGAAACCAAAACATCAATATCA
840 AACTTAGACTTTAACAAAATTTGAAGGAAGAAAACCTTT-TTACGAAACCAAAACGTCAATATCA
* * * * *
438639 TATATCCTTATGGGAATACTAAGTTTATGGAGCCTAT
904 TGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* * *
438676 TCTTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACACACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
* * * * *
438741 TCTATC----A----A-AAA-ACA-G------TAG--ACCCCAAAGCATCAATGCCATGTATCCG
66 TCTATCAAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* * ** **
438787 AATGAAAGGAATGTGTTTTTGGTTCCCAATCATGGAAAAAATGGAGACTGTTACGCTAATCCTTG
131 AATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATG
* *
438852 CTTACCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATGC
196 CTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC
* * * * * * *
438917 AAAAGCAGATCATCAACATCATTTATCCTAATAAGAGGAATGTGTTTGTATTGCCTAGTCAGAAA
261 AAAAGAAAATCATCAATATCATTTATCCTAAT-AGAGGAATGTGTTTATAGTGCCTAATCACAAA
* * *
438982 ATGAATGAAGATCATTACTAGAATCAATGTTTGTCACCATTGAGGCACGAACTTAGGCTTTGCAA
325 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTTACAA
* * * * * * *
439047 AAATTGGTGGCAAGAAAGCCTTCCTCATGAAACAAATTTCCATATTGTGGATCCTTATTAGAAGA
390 AAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATTTCAATATCGTGTATCCTTATTAGAAGA
* * * * *
439112 CTAAGTTTATGGTGTCTACTCTTGGAAAGAATGGGGATTAGTATGAC-TTTGTCTCATTTAAGAG
455 CTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACATTTGTCTTATTTAAGAG
* * *
439176 ATAAACTTTGATTCCATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCGTGAAT
520 ACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCGTCAAT
* * * * * *
439241 GTCATGCATCCTATTGAATGGAATGTGTTTTTAGTTCCTAATCATGAAAGTAATAGAGACTGTTA
585 GTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAGTAATGGAGACTGTTA
* * * * *
439306 CGAGAATCAATACATGGCTTGTTTAAGGGATGAACTTTGATTTTAGGAAAAGTAGGGAAAAGAAA
650 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAGGAAAA-TAGGGAAAAGAAA
* * * * *
439371 AGATTTTCGAGCAAAAGAAAAACAAT-AATATGATTTAACCTAATGAGGAGAATGTTTTTATTAT
714 AGATTTTCAAGCAAAAGAAAAAC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGT
* ** *
439435 GACTAATCACAAAGCAAATGAAGATCATTACTAAAATCCATG-TTGTCATAATTGAGGCACGAAC
778 GCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCACGAAC
*
439499 TTAGACTTTAACAAAATTTGAAGGAAGAAAACCTTTCTTACGAAACCAAAACGTCAATATCATAT
843 TTAGACTTTAACAAAATTTGAAGGAAGAAAACCTTT-TTACGAAACCAAAACGTCAATATCATGT
* *
439564 ATCCTTATGGGAAGACTAAGTTTATGGTGCCTAT
907 ATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* **
439598 TCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACACGCTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
** * *
439663 TCTATCAAAAAACAGTAGAAAGAAATGCTTTTCTTGCAACCCCAAAGCATCAATGCCATGTATCC
66 TCTATC-AAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* ** **
439728 TAAGGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGCTAATCCTT
130 TAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAAT
*
439793 GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATG
195 GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
* * * * * * * * *
439858 CACAAGCAGATCATCAACATCATTTATCCGAATAAGAGGAATGTATTTGTAGTGCCTAGTCAGAA
260 CAAAAGAAAATCATCAATATCATTTATCCTAAT-AGAGGAATGTGTTTATAGTGCCTAATCACAA
* * **
439923 AATGAATGAAGATCATTACTAGAATCAATGTTTGTCACCGTTGAGGCACGAACTTAAGCTTCGCA
324 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTTACA
** * ** * *
439988 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCAGTATCGTGTATCCTTATGAGA
389 AAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACC-AA-TTTCAATATCGTGTATCCTTATTAGA
* * *
440053 AGACTAAGTTTATGGTGCCTAATCCTAAAAATAATAGGGATTAGTATGATTATTCATGTTTGTCT
452 AGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG---A--CA--TTTGTCT
* * ** *
440118 TATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATGCTTTTCTTATGGCACCA
510 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCA
* * * * * * * **
440183 AAACATCAATGTCATGTATCCAAATGAAAGGAATTTGTTTTTGGTGCGCAATTATGAAAAAAATG
575 AATCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAGTAATG
* * * * * * *
440248 GAGACTGTTATGGGAATTAAAGCTTACCTTATTTAAGGGATGAACTTTAATTTAAAGAAAAATAG
640 GAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTT-TAGGAAAATAG
* * * * *
440313 GGCAACGAAAAG-TTTTGCATA-CAAAAGAAAAACTTCTATATCTTTTATCCTAATG-GAGAGAA
704 GGAAAAGAAAAGATTTT-CA-AGCAAAAGAAAAACATCAATATCATTTATCCTAATGAG-GAGAA
* ** * * * *
440375 TATGCCTAGAT-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCATAG
766 TGTGTTTA-TTGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCATAA
* * * * ** * * * * **
440439 TTAAGGCATGAACTTAGGCTTT-ACAAAAATTGGTGCAAAGAAAGCTTTTCTTACAAAACCAATG
830 TTGAGGCACGAACTTAGACTTTAACAAAATTTGAAG-GAAGAAAACCTTT-TTACGAAACCAAAA
* * * *
440503 CTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTAGGGTGCCTAA
893 CGTCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* * *
440551 TCCTGAAAAGAATAGGGATTCGTATGACTATTCATGTTTGTT-TTATTTGAGAGACAAACTTTGA
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT-TTCTTATTTAAGAGACAAACTTTGA
* * ** *
440615 TTCTATCAAAAACGGTAGAAAGAAATGCTTTTCTTGCGACACCAAAGGGTCAATGTCGTGTATCC
65 TTCTATCAAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* * * * * *
440680 TAATGGAAA-GAATATGTTTTTGGTTCCCAATCATTAAAAGAGTGGAGACTGTTATGAGAATCAA
130 TAAT-GAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAA
* * * *
440744 TGCTTGCCTT-TTTTAGGAGATGAACTTTAATTTTAAGGAAAAT-GGTGGAAAAAAAAGATTTCC
194 TGCTTGCCTTATTTAAGG-GATGAACTTTAATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTC
* * * * *
440807 ATGTAAAAGAGAATCATCAATATCATTTATCCCAAT-GAGGAGAGTATGTTTATAGTCCCTAATC
257 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATAGAGGA-A-TGTGTTTATAGTGCCTAATC
* * * *
440871 ACAAAATGAAT-AAGATCATTACTA-TATCCATGTTTGTCCCCGTTAAGGCACGAACTTACGCTT
320 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTT
* ** * * *
440934 TACAAAAACTAATGGGAAGAAAGCCTTTCTCACGAAACCAATGCTTCAATATCATGTATCCTTAT
385 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAT--TTCAATATCGTGTATCCTTAT
* * **
440999 TAAAAGAATAAGTTTATGGTGCCTAAT-CTGGAAAAGAATTAGGATTAGTATGACTATTCATGTT
448 TAGAAGACTAAGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATG---A--CA--TT
* * * * * ** *
441063 TGTCTTATTTAAGAGAAAAACTTTTACTCTATCAAATATGGCAGAAAGAAATGCTTTTCTTGC-A
505 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGA
* * *
441127 GCACCAAAGT-GTCAATGTCATGTATCCTAATAAAAGGAATATGATTTTGGTTCCCAATCATGAA
570 -CACCAAA-TCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATG-A
* * * * * *
441191 AAG-AATGGAGATTGTCACGAGAATGAATGCGTGCCTTTTTTAAGAGATGAACTTTAATTTTAAG
632 AAGTAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT-AG
* * * * * * * * *
441255 GAAAATGGGGCAAAGGAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCCAACGAT
696 GAAAATAGGGAAAAGAAAAGATTTTCAAGCAAAAGAAAAACATCAATATCATTTATCCTAATGAG
* * * * *
441320 GAGAGTATGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATTCATGTTTGTC
761 GAGAATGTGTTTATTGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTC
* ** * ** * * * * * *
441385 CTTGTTAAGGCATAAACTTAGGCTTT-ACAAAAACTGGTCA-GAAGAAAGCC--TTT-C----TC
826 ATAATTGAGGCACGAACTTAGACTTTAAC-AAAATTTG-AAGGAAGAAAACCTTTTTACGAAACC
**** * * *
441441 AATGTTTCAATATCATGTATCCTGACT-ATAAGACTAATTTTATGGTGCCTAA
889 AAAACGTCAATATCATGTATCCTTA-TGAGAAGACTAAGTTTATGGTGCCTAA
* * * *
441493 TCCTGAAAAAAATGGAGATTAGTATGACTATTCACGTTTATCTTATTTAAGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
441558 TCTATCAAGAATGGTTGAAAGAAATGCTTTTCTTACAACACCAAAGCATTAATGTCGTGTATTCT
66 TCTATCAAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* * * ** * ** **
441623 ATTGAATGTAATGTGTTTTCAGTTCCTAATCGTGAAAGGAATGGAGACTGTTGTGAGAATCAATG
131 AATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATG
* * * * * * *
441688 CATGCCTTATTTAAGGGACGAACTTTGATTTTGAGGAAAATAGGGCAAAGCAAAGATTTCCAAGC
196 CTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC
* ** *
441753 AAAAGAATATCAAT-AATATCATTTATCCTAAT-GAGGATAATGTGTTTATAGTGAGTAATCATA
261 AAAAGAAAATC-ATCAATATCATTTATCCTAATAGAGG--AATGTGTTTATAGTGCCTAATCACA
** * * ** ** *
441816 AAGCGAATGAAGATCATCACTAAAATCCATGTTTGTCACAATTGAGTTACGAACTTAGACTTTA-
323 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTTAC
* * * ** *
441880 ACAAAATTTGAGGGAAGAAAGCCTTTCTTAGGAAACCAAAGCATCAATATCGTATATCCTTA-TA
388 A-AAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACC-AA-TTTCAATATCGTGTATCCTTATTA
* * * * * *
441944 GGAAGATTGAGTTTATGGTGCCTATTCCTGAAAAGATTGGGTATTAGTATGGCTATTCATGTTTA
450 -GAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-G--A--CA--TTTG
*
442009 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGTTTTTCTTGCGACA
507 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACA
* * * *
442074 CC-AATGGGTTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGAAGAAAAG
572 CCAAAT-CGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATG-AAAG
* * * * *
442138 -AATGGTGACTGTCACAAGAATCAATGCTTGCCTTATTTAGGGGATAAACTTTAATTTTAAGGAA
635 TAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT-AGGAA
** * * ** * *
442202 AATAGGTCAAAGAAAATATTTT-AATGCAAAATAAAATTATCAATATCTTTTATCCTAATAAGGA
699 AATAGGGAAAAGAAAAGATTTTCAA-GCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGA
* * *
442266 GAATGTGTTTGTAGTGCCTAATCAGAAAA-AGAATGAAGAT-ATTTACTAGAATCCATGTTTGTC
763 GAATGTGTTTATTGTGCCTAATCACAAAATA-AATGAAGATCA-TTACTAGAATCCATGTTTGTC
** ** * * * *
442329 -TCAATTGAGGCACGAACTTAGAGCCAT-A-AAAA-TTGGTGTGAAGAAAGCCATTCTTGCGAAG
826 AT-AATTGAGGCACGAACTTAGA-CTTTAACAAAATTTGAAG-GAAGAAAACC-TTTTTACGAAA
* * * * * *
442390 CTAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCTTAA
887 CCAAAACGTCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* ** * *
442444 TCTTGAAAAGAATAAGGATTAGTATGATTATTCATGTTTGTT-TTATTTAAGAGGCAAACTTTGA
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT-TTCTTATTTAAGAGACAAACTTTGA
* * *** ** *
442508 TTCAATCAAAAATGGTTGAAAGAAATGC-TTTCTTGTGGCACCAAAGCGGCAATGTCAGGTATCC
65 TTCTATCAAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* * * *
442572 TAATGAAAGGAATTTGTTTTT-GTGCGC-AATCATGGAAAAAATGGAGACTGTTAC-AGGAACCA
130 TAATGAAAGGAATGTGTTTTTGGTTC-CTAATCATGAAAAAAATGGAGACTGTTACGA-GAATCA
* *
442634 ATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTAAGGAAAATAGGGCAACGAAAAGATTTTCA
193 ATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * *
442699 CGCAAAAGAAAAACTTCAATATCATTTATCCTAAT-GAGGATAATATGTTTATAGTGCCTAATCA
258 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAGAGG--AATGTGTTTATAGTGCCTAATCA
* * **
442763 CAAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCATAGTTGAGGCACGAACTTAGGCTTT
321 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTT
* * * **
442828 ACAAAAATTGCTGCGAAGAAAGCCTTTCTTATGAAACCAATGCTTCAATATCATGTATTTTTATT
386 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAT--TTCAATATCGTGTATCCTTATT
*
442893 AGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTCG
449 AGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC-ATT--TG-TC-
* * * * * * *
442958 TTTTATGTAAGTGATAAACTTTGATTCTATCAAAAACGGTAGAAACAAATCCTTTTCTTGTGACA
509 --TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACA
* * *
443023 CCAAAGCGTCAATATCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATAAAATGT
572 CCAAATCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAA-GT
* *
443088 -ATGGAGACTGTTACGAGAATCAATGCTTGCCTTTTTTAAGAGATGAACTTTAATTTTAAGGAAA
636 AATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT-AGGAAA
* * ** ** * *
443152 ATGAGGGAAAA-AAAAGATTTTCATGTAAAAGGGAATGATCAATATCATTTACCCCAATGAGGAG
700 AT-AGGGAAAAGAAAAGATTTTCAAGCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * *
443216 AGTATGTTTGTAGTCCCTAATCACAAAATGAATGAAAATCATTATTAGAATCCATGTTTGTCCCT
764 AATGTGTTTATTGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGT-CAT
* * * * ** * *
443281 -GTTGAGGCACGAACTTAGGCTTT-ACAAAAACTAGTGGGAAGAAAGCCTTTCTAACGAAACCAA
828 AATTGAGGCACGAACTTAGACTTTAAC-AAAATTTGAAGGAAGAAAACCTTT-TTACGAAACCAA
** * * *
443344 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAA
891 AACGTCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
* *
443394 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGAT
1 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
* * * *
443459 TCTATCAAAAATGGTCA-AAAGAAATGCTTTTCTTGCGACACCAAAGCGTTAATGTCATGTATCT
66 TCTATCAAAAATGGT-AGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* * ** ** *
443523 TACTGAATGGAATGTGTTTTTGGTTTCC-AATCATGAAAGGAATGGAGACCATTATGAGAATCAA
130 TAATGAAAGGAATGTGTTTTTGG-TTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAA
* *
443587 TGCTTGCCTTATTTAAGGGATGAACTTT-GTTTCTAAGGAAAATAGGGCAAAGAAAA-ATTTACA
194 TGCTTGCCTTATTTAAGGGATGAACTTTAATTT-TAAGGAAAATAGGGCAAAGAAAAGATTTTCA
*
443650 TGCAAAAAAAAAAATCATCAATATCATTTATCCTAATA-AGAGAATGTGTTTATAGTGCCTAATC
258 TGC--AAAAGAAAATCATCAATATCATTTATCCTAATAGAG-GAATGTGTTTATAGTGCCTAATC
* * * ** * *
443714 CCAAAATGAACGAAGATCATTACTAGAATCCATGTCTGTCACAATTAAGGCACGAACTTAGACTT
320 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTT
* * * * * ** *
443779 TACAAAAGTTGGTGGAAAGAAAACCTTTCTTACGAAACAAAAGCATCGATATCGTGTATCCTTAT
385 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAAC-CAA-TTTCAATATCGTGTATCCTTAT
* * * * * *
443844 AAGAAGACTAAGTTTTTAGTGCCAAATCCTAAAAAGAATTGGGATTAGCT-TGACTATTAATATT
448 TAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAC-------ATT
* * * * ** * * *
443908 TGTTTTATATAAGACACAAACTTTGATTCAATCAAACGCGGTTGAAAGAGATGC---TATT--GA
505 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGA
* *
443968 CACC-AATGTGTCAATGTCATGTATCCTAATGAAAGGAATGTATTTTTGGTTCCCAATCATGAAA
570 CACCAAAT-CGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATG-AA
**
444032 AG-AATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAAT
633 AGTAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT-AGG
* * * * * *
444096 AAAATAGGGCAAAGAAAAGATTTCCATA-CGAAAGAATATCATCAATATCATTTATCCTAATAAG
697 AAAATAGGGAAAAGAAAAGATTTTCA-AGCAAAAGAAAAACATCAATATCATTTATCCTAATGAG
* * * *
444160 AAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGA
761 GAGAATGTGTTTATTGTGCCTAATCACAAAATAAATGAAGA
444201 AAGCTTTGTA
Statistics
Matches: 6323, Mismatches: 895, Indels: 370
0.83 0.12 0.05
Matches are distributed among these distances:
922 868 0.14
923 2 0.00
924 2 0.00
927 1 0.00
930 1 0.00
931 3 0.00
932 9 0.00
933 156 0.02
934 240 0.04
935 40 0.01
937 1 0.00
939 2 0.00
940 3 0.00
941 30 0.00
942 1420 0.22
943 130 0.02
944 639 0.10
945 83 0.01
946 16 0.00
947 196 0.03
948 15 0.00
949 567 0.09
950 633 0.10
951 224 0.04
952 763 0.12
953 269 0.04
954 3 0.00
955 1 0.00
956 2 0.00
958 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (940 bp):
TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
TCTATCAAAAATGGTAGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
AATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATG
CTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC
AAAAGAAAATCATCAATATCATTTATCCTAATAGAGGAATGTGTTTATAGTGCCTAATCACAAAA
TGAATGAAGATCATTACTAGAATCCATGTTTGTCACCGTTGAGGCACGAACTTAGGCTTTACAAA
AATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATTTCAATATCGTGTATCCTTATTAGAAGAC
TAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACATTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAATCGTCAATG
TCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAGTAATGGAGACTGTTAC
GAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAGGAAAATAGGGAAAAGAAAAG
ATTTTCAAGCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCC
TAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTA
GACTTTAACAAAATTTGAAGGAAGAAAACCTTTTTACGAAACCAAAACGTCAATATCATGTATCC
TTATGAGAAGACTAAGTTTATGGTGCCTAA
Found at i:445131 original size:20 final size:19
Alignment explanation
Indices: 445106--445161 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
445096 CCTCTAGTTT
* *
445106 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGA-A
445126 CATGTATC-AGTACAATGAA
1 CATGTATCGA-TACAATGAA
445145 CATGTATCGATACAATG
1 CATGTATCGATACAATG
445162 TATCGATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:445164 original size:13 final size:12
Alignment explanation
Indices: 445146--445202 Score: 50
Period size: 13 Copynumber: 4.9 Consensus size: 12
445136 TACAATGAAC
445146 ATGTATCGATACA
1 ATGTATCGATA-A
*
445159 ATGTATCGATAT
1 ATGTATCGATAA
*
445171 ATCTA--GAT--
1 ATGTATCGATAA
445179 ATGTATCGATACA
1 ATGTATCGATA-A
445192 ATGTATCGATA
1 ATGTATCGATA
445203 TGTCTAGATA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
8 4 0.11
10 6 0.17
12 4 0.11
13 22 0.61
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (12 bp):
ATGTATCGATAA
Found at i:445184 original size:20 final size:20
Alignment explanation
Indices: 445159--445222 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
445149 TATCGATACA
445159 ATGTATCGATATATCTAGAT
1 ATGTATCGATATATCTAGAT
445179 ATGTATCG--ATA-C---A-
1 ATGTATCGATATATCTAGAT
*
445192 ATGTATCGATATGTCTAGAT
1 ATGTATCGATATATCTAGAT
445212 ATGTATCGATA
1 ATGTATCGATA
445223 CATACAAGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 8 0.22
14 1 0.03
15 2 0.06
16 1 0.03
17 1 0.03
18 3 0.08
19 1 0.03
20 19 0.53
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (20 bp):
ATGTATCGATATATCTAGAT
Found at i:445185 original size:33 final size:33
Alignment explanation
Indices: 445146--445224 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
445136 TACAATGAAC
445146 ATGTATCGATACAATGTATCGATATATCTAGAT
1 ATGTATCGATACAATGTATCGATATATCTAGAT
*
445179 ATGTATCGATACAATGTATCGATATGTCTAGAT
1 ATGTATCGATACAATGTATCGATATATCTAGAT
445212 ATGTATCGATACA
1 ATGTATCGATACA
445225 TACAAGGGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCGATATATCTAGAT
Found at i:445189 original size:10 final size:10
Alignment explanation
Indices: 445159--445222 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
445149 TATCGATACA
445159 ATGTATCGAT
1 ATGTATCGAT
* * *
445169 ATATCTAGAT
1 ATGTATCGAT
445179 ATGTATCGAT
1 ATGTATCGAT
445189 ACAATGTATCGAT
1 ---ATGTATCGAT
* *
445202 ATGTCTAGAT
1 ATGTATCGAT
445212 ATGTATCGAT
1 ATGTATCGAT
445222 A
1 A
445223 CATACAAGGG
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
10 31 0.76
13 10 0.24
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (10 bp):
ATGTATCGAT
Found at i:447712 original size:13 final size:13
Alignment explanation
Indices: 447694--447730 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
447684 GTAACCCATG
*
447694 TATCGATACATTA
1 TATCGATACAATA
*
447707 TATCGATACAATG
1 TATCGATACAATA
447720 TATCGATACAA
1 TATCGATACAA
447731 AGAACATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:452247 original size:13 final size:13
Alignment explanation
Indices: 452229--452259 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
452219 ACATTTCTTC
452229 ATGTATCGATACA
1 ATGTATCGATACA
452242 ATGTATCGATACA
1 ATGTATCGATACA
*
452255 TTGTA
1 ATGTA
452260 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:452265 original size:33 final size:32
Alignment explanation
Indices: 452209--452271 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
452199 GTTACAAGCT
452209 ATGTATCGATACATTTCTTCATGTATCGATACA
1 ATGTATCGATACATTTC-TCATGTATCGATACA
452242 ATGTATCGATACATTGTAC-CATGTATCGAT
1 ATGTATCGATACATT-T-CTCATGTATCGAT
452272 GCAAATAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (32 bp):
ATGTATCGATACATTTCTCATGTATCGATACA
Found at i:452349 original size:19 final size:19
Alignment explanation
Indices: 452304--452374 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
452294 CTGCTAGTTT
**
452304 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA--TGAA
452325 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
* *
452344 CATGTATCGATACAAAGCAG
1 CATGTATCGATACAATG-AA
452364 CATGTATCGAT
1 CATGTATCGAT
452375 GCATCTAGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
19 18 0.40
20 12 0.27
21 15 0.33
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:452935 original size:19 final size:19
Alignment explanation
Indices: 452911--452951 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
452901 CCTTAAAAAT
*
452911 TCTCCCCCTTAAATGATTA
1 TCTCCCCCTTAAACGATTA
452930 TCTCCCCCTTAAACGATTA
1 TCTCCCCCTTAAACGATTA
452949 TCT
1 TCT
452952 TCTCCCACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.24, C:0.34, G:0.05, T:0.37
Consensus pattern (19 bp):
TCTCCCCCTTAAACGATTA
Found at i:456963 original size:13 final size:13
Alignment explanation
Indices: 456945--456969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
456935 CATAAAGTGT
456945 TGTATCGATACAA
1 TGTATCGATACAA
456958 TGTATCGATACA
1 TGTATCGATACA
456970 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:456985 original size:32 final size:33
Alignment explanation
Indices: 456925--456990 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
456915 TTCAACGATT
456925 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
456958 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
456990 T
1 T
456991 TTAAGCTACT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.59
33 13 0.41
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:457120 original size:52 final size:52
Alignment explanation
Indices: 457064--457188 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
457054 CACTGATCTT
* * *
457064 TGTATCGATACATGCAGGCAAATTTGTCGAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
457116 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
457168 TGTATCAATACATGCAGGCAA
1 TGTATCGATACATGCAGGCAA
457189 CTTTTCATAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:472993 original size:474 final size:474
Alignment explanation
Indices: 471554--473590 Score: 2467
Period size: 474 Copynumber: 4.3 Consensus size: 474
471544 GTTAACATCG
* * * *
471554 TGTATCTTTAATAGAAAACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAT
1 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
*
471619 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATAT-AATCAAAAACGGTTGAAAGAAATGC
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCAATCAAAAACGGTTGAAAGAAAT-C
* * * *
471683 TTTTCTTGCGACAACAAAGCGTCAATGTCCTGTACCCCAAAGAAAGGAATGTGTTTCTAGTTCCT
129 TTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAAAGAAAGGAATGTGTTTCTAGTTCCT
* * *
471748 AATCATGAAAAGAATGGAGACTATTACGAGAATCAATCCTCGCCATATTTAAGGGATAAACTTTA
194 AATCA-GAAAAGAATGGAGACTATTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAACTTTA
* * *
471813 ATTTTAAGG-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCCATATCATTTATC
258 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAATATCATTTATC
* * * *
471877 CCAAAAAGGAGAATGTGTTTGTAGTGCGTAATCACAAAATGAATAAAGATCATTGCTAGAATCCA
323 CTAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCA
* * ** * *
471942 T-TTT-CATCCCAATTGAGGCACAAACTTAAACTTTACAAAAATTGCT-GGTAGAAAGCCTTTCT
388 TGTTTGC--CACAATTAAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
472004 TACAAAACCAAAGCATCAATATCA
451 TACAAAACCAAAGCATCAATATCA
* * * * *
472028 TGTATCCTTATTAGAAAACTTAGTTTACGATGCCTAATCCTGAAAAGAATGGGGATTACTGTGA-
1 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* *
472092 TCATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCAATCAAAAACTGTTGAAAGAAATGC
66 T-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAAT-C
* * * *
472157 TTTTCTTGAGACACCAAAGCATCACTGTCATGTATCCTAAAGAAAGGAATGTGTTTCTAGTTTCT
129 TTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAAAGAAAGGAATGTGTTTCTAGTTCCT
* * *
472222 AATC-----A-TATGGAGACTGTTATGAGAATCAATCCTTGCCTAATTTAAGGGATAAACTTTAA
194 AATCAGAAAAGAATGGAGACTATTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAACTTTAA
* * * * *
472281 TTTTAAGGAAAATAGGGCAAAGAAGAGATTTCCATGCAAAAGAATATCATCCATATCATTTATCT
259 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * *
472346 TAAAAAGGAGAATGTATTT-GAGTGCGTAATCACAAAATGAATGAAGATTATTACTAGAATCCAT
324 TAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCAT
*
472410 GTTTGTCC-CAATTGAGGCAT-AACCTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
389 GTTTG-CCACAATTAAGGCATGAA-CTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
*
472473 ACAAAAGCAAAGCATCAATATCA
452 ACAAAACCAAAGCATCAATATCA
* * *
472496 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTATTCCTAAAAAGAATAGGGATTAGTATGAC
1 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
472561 TATTCATGTTCGTCTTATTTAAGAGACAAACTTTGATTCCATCAGAAATGGTTGAAATAAAT-TT
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATCTT
* ** * * * *
472625 TTCTTGCGACACCAATGCATCAATGTCATGTACCCTATCGAATGGAATGTGTTTTTGGTTCCCAA
131 TTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAAAGAAAGGAATGTGTTTCTAGTTCCTAA
* * * * *
472690 TCAGGAAAGGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGAT
196 TCA-GAAAAGAATGGAGACTATTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAACTTTAAT
* * *
472755 TTTAAGGAAAATAGGGTAAAGAAAAGATTTACATGCAAAAAAAAAATCATCAATATCATTTGTCC
260 TTTAAGGAAAATAGGGCAAAGAAAAGATTTACATGC-AAAAGAAAATCATCAATATCATTTATCC
** * *
472820 TAATGA-GAGAATGTGTTTATAGTGCCTAATCATAAAATGAATAAAGATTATTACTAGAATCCAT
324 TAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCAT
** * ** *
472884 GTTTGCCACAATTAAGGCATGAACTTAGGCATTACAAAAATTGGTGAAAAAAAAGCCTTTCTTAC
389 GTTTGCCACAATTAAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAC
* * * **
472949 AAGACCAATGCTTCAATATTG
454 AAAACCAAAGCATCAATATCA
* * * * *
472970 TGTATCCTTGTTAGAAGACTAAGTTTGTGGTGCCTAATCCTGAAAACAATGGGGATTAGTATGAT
1 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
473035 TATTCATTTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATTGAAAGAAATGCT
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAAT-CT
* * * * * * *
473100 TTTCTTGCAACACCGAAGCATCATTGTCATGTATCCTAATGAAAGGAATATGTTTCTAGCTCCTA
130 TTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAAAGAAAGGAATGTGTTTCTAGTTCCTA
* * * * * * * *
473165 ATAAAGAAAAGAAGGGAGATTGTTATGAGAATTAAT-GTTGCCTTATTTAAGGGATGAACTTTGA
195 AT-CAGAAAAGAATGGAGACTATTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAACTTTAA
* ** * * * *
473229 CTTTAATAAAAACTA-GGCAAAGAAAAAATTTACATACAAAGGAAAATCATCAATGTCATTTATC
259 TTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAATATCATTTATC
** * * * *
473293 CTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTGCTAGAATCCT
323 CTAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCA
* * * * * * *
473358 TTTTTGTCATAATTAAGGCAAGAACTTAGATTTTACAAAAATTGGTGGGAAGAAACCCTTTCTTA
388 TGTTTGCCACAATTAAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTA
* * *
473423 CGAAACAAAAGCATCAATATCG
453 CAAAACCAAAGCATCAATATCA
* * * *
473445 TGTATCCTTATGA-AAAGACTAAGTTTATAGTGCCAAATCCTGAAAAGAATCGGGATTAGTATGA
1 TGTATCCTTATTAGAAA-ACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * *
473509 CTATTTATGTTTATTTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGC
65 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAAT-C
*
473574 TTTTCTTGAGACACCAA
129 TTTTCTTGCGACACCAA
473591 TGTGCCAATG
Statistics
Matches: 1349, Mismatches: 188, Indels: 51
0.85 0.12 0.03
Matches are distributed among these distances:
466 60 0.04
467 129 0.10
468 224 0.17
469 1 0.00
470 1 0.00
473 96 0.07
474 452 0.34
475 302 0.22
476 83 0.06
477 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (474 bp):
TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAAAGAAAGGAATGTGTTTCTAGTTCCTAA
TCAGAAAAGAATGGAGACTATTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAACTTTAATT
TTAAGGAAAATAGGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAATATCATTTATCCTA
AAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGT
TTGCCACAATTAAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAA
AACCAAAGCATCAATATCA
Found at i:473055 original size:942 final size:942
Alignment explanation
Indices: 471554--473607 Score: 2606
Period size: 942 Copynumber: 2.2 Consensus size: 942
471544 GTTAACATCG
* * * * *
471554 TGTATCTTTAATAGAAAACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAT
1 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAC
*
471619 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATAT-AATCAAAAACGGTTGAAAGAAATGC
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCAATCAAAAACGGTTGAAAGAAAT-C
* * * *
471683 TTTTCTTGCGACAACAAAGCGTCAATGTCCTGTACCCCAAAGAAAGGAATGTGTTTCTAGTTCCT
129 TTTTCTTGCGACACCAATGCGTCAATGTCATGTACCCCAAAGAAAGGAATGTGTTTCTAGTTCCC
* *
471748 AATCATGAAAAGAATGGAGACTATTACGAGAATCAATCCTCGCCATATTTAAGGGATAAACTTTA
194 AATCAGGAAAAGAATGGAGACTATTACGAGAATCAATCCTCGCCATATTTAAGGAATAAACTTTA
* * * *
471813 ATTTTAAGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCCATATCATTTATCC
259 ATTTTAAGGAAATAGGGCAAAGAAAAGATTTACATGCAAAAAAAAATCATCAATATCATTTATCC
* * *
471878 CAAAAAGGAGAATGTGTTTGTAGTGCGTAATCACAAAATGAATAAAGATCATTGCTAGAATCCAT
324 CAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCAT
* * * ** *
471943 TTTCATCCCAATTGAGGCACAAACTTAAACTTTACAAAAATTGCTGGTAGAAAGCCTTTCTTACA
389 TTTCA-CACAATTAAGGCACAAACTTAAACATTACAAAAATTGCTGAAAAAAAGCCTTTCTTACA
*
472008 AAACCAAAGCATCAATATCATGTATCCTTATTAGAAAACTTAGTTTACGATGCCTAATCCTGAAA
453 AAACCAAAGCATCAATATCATGTATCCTTATTAGAAAACTAAGTTTACGATGCCTAATCCTGAAA
* * *
472073 AGAATGGGGATTACTGTGATCATTCATGTTTGTCTTATTTAAG-GGACAAACTTTGATTCAATCA
518 ACAATGGGGATTACTATGATCATTCATGTTTATCTTATTTAAGAGG-CAAACTTTGATTCAATCA
472137 AAAACTG-TTGAAAGAAATGCTTTTCTTG-AGACACCAAAGCATCACTGTCATGTATCCTAAAGA
582 AAAAC-GATTGAAAGAAATGCTTTTCTTGCA-ACACCAAAGCATCACTGTCATGTATCCTAAAGA
* * * * * *
472200 AAGGAATGTGTTTCTAGTTTCTAAT-CA-TATGGAGACTGTTATGAGAATCAATCCTTGCCTAAT
645 AAGGAATATGTTTCTAGCTCCTAATAAAGAAGGGAGACTGTTATGAGAATCAAT-CTTGCCTAAT
* * * * * * *
472263 TTAAGGGATAAACTTTAATTTTAAGGAAAA-TAGGGCAAAGAAGAGATTTCCATGCAAAAGAATA
709 TTAAGGGATAAACTTTAACTTTAAGAAAAACTA-GGCAAAGAAAAAATTTACATACAAAAGAAAA
* * * *
472327 TCATCCATATCATTTATCTTAAAAAGGAGAATGTATTT-GAGTGCGTAATCACAAAATGAATGAA
773 TCATCAATATCATTTATCCTAAAAAGGAGAATGTATTTAGAGCGCCTAATCACAAAATGAATGAA
* * * *
472391 GATTATTACTAGAATCCATGTTTGTCCCAATTGAGGCATA-ACCTTAAACTTTACAAAAATTGGT
838 GATCATTACTAGAATCCATGTTTGTCACAATTAAGGCA-AGAACTTAAACTTTACAAAAATTGGT
*
472455 GGGAAGAAAGCCTTTCTTACAAAAGC-AAAGCATCAATATCA
902 GGGAAGAAACCCTTTCTTACAAAA-CAAAAGCATCAATATCA
* *
472496 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTATTCCTAAAAAGAATAGGGATTAGTATGAC
1 TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAC
* * * * *
472561 TATTCATGTTCGTCTTATTTAAGAGACAAACTTTGATTCCATCAGAAATGGTTGAAATAAAT-TT
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATCTT
* * ** * * *
472625 TTCTTGCGACACCAATGCATCAATGTCATGTACCCTATCGAATGGAATGTGTTTTTGGTTCCCAA
131 TTCTTGCGACACCAATGCGTCAATGTCATGTACCCCAAAGAAAGGAATGTGTTTCTAGTTCCCAA
* * * * * * *
472690 TCAGGAAAGGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGAT
196 TCAGGAAAAGAATGGAGACTATTACGAGAATCAATCCTCGCCATATTTAAGGAATAAACTTTAAT
* *
472755 TTTAAGGAAAATAGGGTAAAGAAAAGATTTACATGCAAAAAAAAAATCATCAATATCATTTGTCC
261 TTTAAGG-AAATAGGGCAAAGAAAAGATTTACATGC-AAAAAAAAATCATCAATATCATTTATCC
* ** * *
472820 TAATGA-GAGAATGTGTTTATAGTGCCTAATCATAAAATGAATAAAGATTATTACTAGAATCCAT
324 CAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCAT
** ** *
472884 GTTTGC-CACAATTAAGGCATGAACTTAGGCATTACAAAAATTGGTGAAAAAAAAGCCTTTCTTA
389 -TTT-CACACAATTAAGGCACAAACTTAAACATTACAAAAATTGCTG-AAAAAAAGCCTTTCTTA
* * * ** * * ** *
472948 CAAGACCAATGCTTCAATATTGTGTATCCTTGTTAGAAGACTAAGTTTGTGGTGCCTAATCCTGA
451 CAAAACCAAAGCATCAATATCATGTATCCTTATTAGAAAACTAAGTTTACGATGCCTAATCCTGA
* * * *
473013 AAACAATGGGGATTAGTATGATTATTCATTTTTATCTTATTTAAGAGGCAAACTTTGATTCTATC
516 AAACAATGGGGATTACTATGATCATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCAATC
* * *
473078 AAAAACGATTGAAAGAAATGCTTTTCTTGCAACACCGAAGCATCATTGTCATGTATCCTAATGAA
581 AAAAACGATTGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCACTGTCATGTATCCTAAAGAA
* * *
473143 AGGAATATGTTTCTAGCTCCTAATAAAGAAAAGAAGGGAGATTGTTATGAGAATTAATGTTGCCT
646 AGGAATATGTTTCTAGCTCCTAAT-----AAAGAAGGGAGACTGTTATGAGAATCAATCTTGCCT
* * * * *
473208 TATTTAAGGGATGAACTTTGACTTTAATAAAAACTAGGCAAAGAAAAAATTTACATACAAAGGAA
706 AATTTAAGGGATAAACTTTAACTTTAAGAAAAACTAGGCAAAGAAAAAATTTACATACAAAAGAA
* ** * *
473273 AATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATG
771 AATCATCAATATCATTTATCCTAAAAAGGAGAATGTATTTAGAGCGCCTAATCACAAAATGAATG
* * * * * *
473338 AAGATCATTGCTAGAATCCTTTTTTGTCATAATTAAGGCAAGAACTTAGATTTTACAAAAATTGG
836 AAGATCATTACTAGAATCCATGTTTGTCACAATTAAGGCAAGAACTTAAACTTTACAAAAATTGG
* *
473403 TGGGAAGAAACCCTTTCTTACGAAACAAAAGCATCAATATCG
901 TGGGAAGAAACCCTTTCTTACAAAACAAAAGCATCAATATCA
* * * *
473445 TGTATCCTTATGA-AAAGACTAAGTTTATAGTGCCAAATCCTGAAAAGAATCGGGATTAGTATGA
1 TGTATCCTTATTAGAAA-ACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGA
* * * * *
473509 CTATTTATGTTTATTTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGC
65 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAAT-C
* * *
473574 TTTTCTTGAGACACCAATGTGCCAATGTCATGTA
129 TTTTCTTGCGACACCAATGCGTCAATGTCATGTA
473608 TCGTGTTAGG
Statistics
Matches: 948, Mismatches: 141, Indels: 37
0.84 0.13 0.03
Matches are distributed among these distances:
940 119 0.13
941 113 0.12
942 344 0.36
943 4 0.00
948 96 0.10
949 242 0.26
951 30 0.03
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (942 bp):
TGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAC
TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTTGAAAGAAATCTT
TTCTTGCGACACCAATGCGTCAATGTCATGTACCCCAAAGAAAGGAATGTGTTTCTAGTTCCCAA
TCAGGAAAAGAATGGAGACTATTACGAGAATCAATCCTCGCCATATTTAAGGAATAAACTTTAAT
TTTAAGGAAATAGGGCAAAGAAAAGATTTACATGCAAAAAAAAATCATCAATATCATTTATCCCA
AAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATTT
TCACACAATTAAGGCACAAACTTAAACATTACAAAAATTGCTGAAAAAAAGCCTTTCTTACAAAA
CCAAAGCATCAATATCATGTATCCTTATTAGAAAACTAAGTTTACGATGCCTAATCCTGAAAACA
ATGGGGATTACTATGATCATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCAATCAAAAA
CGATTGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCACTGTCATGTATCCTAAAGAAAGGAA
TATGTTTCTAGCTCCTAATAAAGAAGGGAGACTGTTATGAGAATCAATCTTGCCTAATTTAAGGG
ATAAACTTTAACTTTAAGAAAAACTAGGCAAAGAAAAAATTTACATACAAAAGAAAATCATCAAT
ATCATTTATCCTAAAAAGGAGAATGTATTTAGAGCGCCTAATCACAAAATGAATGAAGATCATTA
CTAGAATCCATGTTTGTCACAATTAAGGCAAGAACTTAAACTTTACAAAAATTGGTGGGAAGAAA
CCCTTTCTTACAAAACAAAAGCATCAATATCA
Found at i:473940 original size:13 final size:13
Alignment explanation
Indices: 473922--473946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
473912 ATAATGCACA
473922 GTATCGATACATT
1 GTATCGATACATT
473935 GTATCGATACAT
1 GTATCGATACAT
473947 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:474043 original size:19 final size:19
Alignment explanation
Indices: 474019--474111 Score: 102
Period size: 19 Copynumber: 5.5 Consensus size: 19
474009 AATTGTTTGA
474019 ATCGATACATACAAGATGT
1 ATCGATACATACAAGATGT
474038 ATCGATACAT------TGT
1 ATCGATACATACAAGATGT
474051 ATCGATACATACAAGATGT
1 ATCGATACATACAAGATGT
474070 ATCGATACAT------TGT
1 ATCGATACATACAAGATGT
474083 ATCGATACATACAAGATGT
1 ATCGATACATACAAGATGT
474102 ATCGATACAT
1 ATCGATACAT
474112 TGTATCAATA
Statistics
Matches: 62, Mismatches: 0, Indels: 24
0.72 0.00 0.28
Matches are distributed among these distances:
13 26 0.42
19 36 0.58
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (19 bp):
ATCGATACATACAAGATGT
Found at i:474053 original size:13 final size:13
Alignment explanation
Indices: 474035--474124 Score: 63
Period size: 13 Copynumber: 6.0 Consensus size: 13
474025 ACATACAAGA
474035 TGTATCGATACAT
1 TGTATCGATACAT
474048 TGTATCGATACAT
1 TGTATCGATACAT
474061 ACAAGATGTATCGATACAT
1 ------TGTATCGATACAT
474080 TGTATCGATACAT
1 TGTATCGATACAT
474093 ACAAGATGTATCGATACAT
1 ------TGTATCGATACAT
*
474112 TGTATCAATACAT
1 TGTATCGATACAT
474125 GACCAAATGT
Statistics
Matches: 64, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 38 0.59
19 26 0.41
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:474055 original size:32 final size:32
Alignment explanation
Indices: 474019--474146 Score: 222
Period size: 32 Copynumber: 4.0 Consensus size: 32
474009 AATTGTTTGA
474019 ATCGATACATACAAGATGTATCGATACATTGT
1 ATCGATACATACAAGATGTATCGATACATTGT
474051 ATCGATACATACAAGATGTATCGATACATTGT
1 ATCGATACATACAAGATGTATCGATACATTGT
474083 ATCGATACATACAAGATGTATCGATACATTGT
1 ATCGATACATACAAGATGTATCGATACATTGT
*
474115 ATCAATACATGACCAA-ATGTATCGATACATTG
1 ATCGATACAT-A-CAAGATGTATCGATACATTG
474147 GCTTGTAATG
Statistics
Matches: 93, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
32 73 0.78
33 17 0.18
34 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.30
Consensus pattern (32 bp):
ATCGATACATACAAGATGTATCGATACATTGT
Found at i:475966 original size:25 final size:24
Alignment explanation
Indices: 475938--475984 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
475928 TTTGATTATC
*
475938 CAAACATAAAGAAGAAAGGCATGAG
1 CAAAC-TAAAGAAGAAAGCCATGAG
*
475963 CAAACTGAAGAAGAAAGCCATG
1 CAAACTAAAGAAGAAAGCCATG
475985 GTGGATACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.53, C:0.15, G:0.23, T:0.09
Consensus pattern (24 bp):
CAAACTAAAGAAGAAAGCCATGAG
Found at i:482724 original size:13 final size:13
Alignment explanation
Indices: 482706--482731 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
482696 CACCTTCAGA
482706 TGTATCGATACAT
1 TGTATCGATACAT
482719 TGTATCGATACAT
1 TGTATCGATACAT
482732 GACCACTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:482838 original size:13 final size:13
Alignment explanation
Indices: 482820--482847 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
482810 ACGTACAAGA
482820 TGTATCGATACAT
1 TGTATCGATACAT
482833 TGTATCGATACAT
1 TGTATCGATACAT
482846 TG
1 TG
482848 GCTTGTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:484578 original size:474 final size:472
Alignment explanation
Indices: 483584--484956 Score: 1799
Period size: 474 Copynumber: 2.9 Consensus size: 472
483574 TGAGCTTTCA
* * * *
483584 TATCGTAATGAAAGGAATGTGTTT-TTGGTTCCCAATCATCAAAAGAATTGAGACTGTTATGAGA
1 TATCCTAAAGAAAGGAATGTGTTTCTT-GTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGA
** * * *
483648 ATTTATACTTGCTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
65 ATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * *
483713 TCCACGCAAAAAAATATCATTAATATCATTTATCCCAATAAGGAGAATGTGTTTGTACTGCCTAA
130 TCCATGCAAAAAAATATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTGTAGTGCCTAA
* *
483778 TCACACAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCACTTGAGGCAGAAACTTAGAC
195 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CCAATTGAGGCAG-AACTTAGAC
* * * * * * *
483843 TTTAAAAAAATTGGTGGGAAGAAAGCCTTTCTTGCCAAATCAAAGCATCAACATCGTGTATCCTT
258 TTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTACGAAACCAAA--ACCAATATCGTGTATCCTT
* * * *
483908 ATTAGAAAACTAATTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGATTATTCAAGT
321 ATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGATTATTCATGT
* * * *
483973 TTGCCTTATTTAAAAGACAAACTTTGATTCAATCAAGAACGGTTGAAAGAAATGCTTTTCTTGCA
386 TTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGATTGAAAGAAATGCTTTTCTTGCA
* *
484038 ATAGCAAAGCGTCAATGTCATG
451 ACACCAAAGCGTCAATGTCATG
* * *
484060 TATCCTAAAGAAAGGAATGTGTTTCTTCTTCCTAATCATGAAAAGAATGGAGACTGTTATGGGAA
1 TATCCTAAAGAAAGGAATGTGTTTCTTGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA
* * *
484125 TCAATGCTTGCCTCATTTAAGGGATGAACTTTAATGTTAAGGAAAATAGGGCAAAGAAAAGACTT
66 TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
484190 CCATGCAAAAGAATATCATCAATATCATTTATCCTGATAAGGAGAATGTGTTTGTAGGGTCTAAT
131 CCATGCAAAAAAATATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTGTAGTGCCTAAT
* * * *
484255 CACATAATGAATGAAGATCATTTCTAGAATCCATGTTTGTGCCAATTAAGGCATGAACTTAAACT
196 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CCAATTGAGGCA-GAACTTAGACT
* * *
484320 TTACAAAATTTGGTGAGAAGAAAACCTTTCTTATGAAACCAAAACCAATATCGTGTATCCTTATT
259 TTACAAAAATTGGTGAGAAGAAAGCCTTTCTTACGAAACCAAAACCAATATCGTGTATCCTTATT
* * *
484385 AGAAAACTAAGTTTATGGTGCCTAGTCCTGAAAAGAATGGGGATCAGTATAATTATTCATGTTTG
324 AGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGATTATTCATGTTTG
* * * *
484450 TCTTATTTAAGTGACAAACTTTGATTCAATTAAAAATGATTGAAAGAAATGCTTTTCTTGCGACA
389 TCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGATTGAAAGAAATGCTTTTCTTGCAACA
484515 CCAAAGCGTTC-ATGTCATG
454 CCAAAGCG-TCAATGTCATG
* * * *
484534 TATCCTAAAGAAAGGAATGTGTTTCTTGTTCCCAACCATGAAAAGAATGGAGGCTATTACGAGAA
1 TATCCTAAAGAAAGGAATGTGTTTCTTGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA
* * *
484599 TCAATGCTTGCCTTAATTAAGGGATGAACTTAAATTTTAAGGAAAATA-GGCAATGAAAAGATTT
66 TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
484663 CTATGCAAAAAAAAAACCTTCAATATCATTTATCCTAATAAGGAGAATATGTTTGTAGTGCCTAA
131 CCATGC-AAAAAAATATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTGTAGTGCCTAA
* * *
484728 TCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCAAATTTGAGGC---ACTTAGGCT
195 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCAA-TTGAGGCAGAACTTAGACT
* * ** *
484790 TTACAAAAATTAGT-AGGAAGAAAGCTTTTCTTACGAAACCAATGCTTCATTATCGTGTATCCTT
259 TTACAAAAATTGGTGA-GAAGAAAGCCTTTCTTACGAAACCAAAAC--CAATATCGTGTATCCTT
* * * * * *
484854 ATTAGAAGACTAAGTTTATGGCGCCTAAACC-CAATAAGAATGGGGATTATTATGACTATTCATG
321 ATTAGAAAACTAAGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGATTATTCATG
* * *
484918 TTTGTCTTATTTACGAGAAAAACTTTGATTCTATCAAAA
385 TTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAA
484957 GAATGGAGAC
Statistics
Matches: 781, Mismatches: 107, Indels: 22
0.86 0.12 0.02
Matches are distributed among these distances:
469 1 0.00
470 43 0.06
471 2 0.00
472 102 0.13
473 22 0.03
474 345 0.44
475 2 0.00
476 261 0.33
477 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
TATCCTAAAGAAAGGAATGTGTTTCTTGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA
TCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
CCATGCAAAAAAATATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTGTAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCAATTGAGGCAGAACTTAGACTTT
ACAAAAATTGGTGAGAAGAAAGCCTTTCTTACGAAACCAAAACCAATATCGTGTATCCTTATTAG
AAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGATTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCAATCAAAAACGATTGAAAGAAATGCTTTTCTTGCAACACC
AAAGCGTCAATGTCATG
Found at i:486984 original size:52 final size:50
Alignment explanation
Indices: 486871--486984 Score: 138
Period size: 52 Copynumber: 2.2 Consensus size: 50
486861 GAATATTTGG
* * ** *
486871 TGTTTTGGAAATAAAATCGGAGTTGGAGTATCCCGATTGTGGAAAATCGA
1 TGTTTTGGAAATAAAATAGAAGTTGGAGTATCCCGATTAAGAAAAATCGA
* * *
486921 TGCTTTAGAAATAAAATAGAAAGTTGGAGTATCCCCGATTAAGAAAAATTGA
1 TGTTTTGGAAATAAAATAG-AAGTTGGAGTAT-CCCGATTAAGAAAAATCGA
486973 TGTTTTGGAAAT
1 TGTTTTGGAAAT
486985 GGAACCGGGA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 16 0.31
51 11 0.21
52 25 0.48
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.31
Consensus pattern (50 bp):
TGTTTTGGAAATAAAATAGAAGTTGGAGTATCCCGATTAAGAAAAATCGA
Found at i:489335 original size:20 final size:20
Alignment explanation
Indices: 489310--489359 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
489300 AAAATGCCTG
*
489310 AATGTATCGATACAATG-AGC
1 AATGTATCGATACAATGCA-A
*
489330 AATGTATCGATATAATGCAA
1 AATGTATCGATACAATGCAA
489350 AATGTATCGA
1 AATGTATCGA
489360 CACATCTAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACAATGCAA
Found at i:491285 original size:464 final size:466
Alignment explanation
Indices: 490246--491397 Score: 1361
Period size: 464 Copynumber: 2.5 Consensus size: 466
490236 TGATTCTATC
** * * * *
490246 AAAAGAATGGAGATTGTTACGAGAATCAATGCTCACCTTATTTAAGGGATAAACTTTGATTTTAG
1 AAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTAATTTTAA
* *
490311 GGGAAATAAGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCAAT-AATATCATTTATCCTAAGG
66 GGAAAATAAGGCAAAGAAAAGA-TTTCAAGCAAAAGAAAATC-ATCAATATCATTTATCCTAATG
** ** * * *
490375 AGGAGAATGTGTTTATAGTAAGTAATCACAAAGCGAATAAAGATTTTTACTAAAATCCATGTTTA
129 AGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTA
* ** *
490440 TCACAATTGAGGCACGAACATAAACTTTAACAAAATTTGAGGGAAGAAAGCCTTTCTTATGAAAG
194 TCACATTTGAGGCACGAACATAAACTTTAACAAAATCGGAGGGAAAAAAGCCTTTC-T-T---A-
* * * * *
490505 TAACGCATCAATATCGTATTCCTTGTAGGAAGACTAAGTTTACAGTGCTTATTCCTGAAAATAAT
253 T-A-GCATCAATATCGTATTCCTTATAGGAAGACTAAGTTTACAGTGCCTAATCCTAAAAAGAAT
**
490570 GGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACG
316 AAGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACG
* *
490635 GTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATG
381 ATTGAAAGAAATGCTTTTCTTGCGACACAAAAGCATCAATATCATGTATCCTAATGAAAGGAATG
* *
490700 TGTTTCTTGCTCCTAATCATG
446 CGTTTCTTGCTCCAAATCATG
* * * * *
490721 AAAAGAATGGAGACTGTTATGCGAATCAATGCTTGCCTTATTTAAAGAATGAACTTTAATTTTTA
1 AAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTAATTTTAA
* * *
490786 GGAAAATAAGGCAAAGAAAAAACTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAA
66 GGAAAATAAGGCAAAGAAAAGA-TTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * *
490851 GGAGAATGTGTTTGTAGTACCTAATCAGAAAATGAATGAAGATCATTGCTAGAATCCATGTTTAC
130 GGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTAT
* * * *
490916 CCCATTTGAGGCACGAACATAGACTTTATCGAAAA-CGGTGGGAAAAAAGCCTTTC-T-T-GCAT
195 CACATTTGAGGCACGAACATAAACTTTAAC-AAAATCGGAGGGAAAAAAGCCTTTCTTATAGCAT
* * ** *
490977 CATTATCGTGCA-TCCTTATTGGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGACTAAGGAT
259 CAATATCGT--ATTCCTTATAGGAAGACTAAGTTTACAGTGCCTAATCCTAAAAAGAATAAGGAT
* *
491041 TAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAATGATT-CA
322 TAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGATTGAA
* * * *
491105 TGAAATGCTTTTCTTGTGGCACAAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGCGTTT-
387 AGAAATGCTTTTCTTGCGACACAAAAGCATCAATATCATGTATCCTAATGAAAGGAATGCGTTTC
* *
491169 TTGGTTCCAAATCTTG
452 TT-GCTCCAAATCATG
* * * * * * *
491185 AAAAAAATGCAGATTCTTACAAGAATGAATGCTTGCCTTATTTAAGGCATGAACTTTAAATTTAA
1 AAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTAATTTTAA
* * * * *
491250 GGAAAAT-A-GAATAACGAAAAGATTTCCACGCAAAAGAAAAACTTCAATATCATTTATCTTAAT
66 GGAAAATAAGGCA-AA-GAAAAGATTT-CAAGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * *
491313 GAGGAGAATATGTTTATCGTGCCTAGTCACAAAATGAAAGAAGATTATTACTAGAATCCATGTTT
128 GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTT
* *
491378 GTCACATTTAAGGCACGAAC
193 ATCACATTTGAGGCACGAAC
491398 TTATGCTTTA
Statistics
Matches: 576, Mismatches: 93, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
462 2 0.00
463 8 0.01
464 251 0.44
465 101 0.18
466 1 0.00
467 1 0.00
472 1 0.00
474 2 0.00
475 205 0.36
476 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (466 bp):
AAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTAATTTTAA
GGAAAATAAGGCAAAGAAAAGATTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
GAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTATC
ACATTTGAGGCACGAACATAAACTTTAACAAAATCGGAGGGAAAAAAGCCTTTCTTATAGCATCA
ATATCGTATTCCTTATAGGAAGACTAAGTTTACAGTGCCTAATCCTAAAAAGAATAAGGATTAGT
ATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGATTGAAAGAA
ATGCTTTTCTTGCGACACAAAAGCATCAATATCATGTATCCTAATGAAAGGAATGCGTTTCTTGC
TCCAAATCATG
Found at i:491933 original size:14 final size:14
Alignment explanation
Indices: 491910--491940 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
491900 GTTTTTGGTG
*
491910 CTATTTATGCTTGT
1 CTATTCATGCTTGT
491924 CTATTCATGCTTGT
1 CTATTCATGCTTGT
491938 CTA
1 CTA
491941 CTCTGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.13, T:0.52
Consensus pattern (14 bp):
CTATTCATGCTTGT
Found at i:492853 original size:477 final size:473
Alignment explanation
Indices: 491947--492997 Score: 1303
Period size: 477 Copynumber: 2.2 Consensus size: 473
491937 TCTACTCTGG
* * *
491947 AAAAAAATGGGGATTAGTATGACTATTCATGCTTGTCTTATTTAAGAGACAAACTTCGATTCTAT
1 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
492012 CAAAAAAGGCTGAAAGAAATGCTTTTCTTGCGACCCTAGTCGTCAATGCCTTGTATCTTAATGAG
66 -AAAAAAGGCTGAAAGAAATGCCTTTCTTGCGACACTAGTCATCAATGCATTGTATCCTAATGAG
492077 AAGAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATGCTTGCC
130 AAGAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATGCTTGCC
* * * *
492142 TTGTTTAAGGGATAAACCTTAATTTTAATGAAAATTAGGCAACAAAAAGATTTCCATGCAAAAAA
195 TTATTTAAGAGATAAACCTTAATTTTAATGAAAAATAGGCAACAAAAAGATTTCCACGCAAAAAA
* * *
492207 AAACATGAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
260 AAACATCAATATCATTTATCCCAATGAAGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
492272 AAGATCATTTCTAGAATCCATGTTTGTCATAGTTGAGTCACGAACTTAGGCTTTATAAAAATTGG
325 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGTCACGAACTTAGACTTTACAAAAATTGA
* * * *
492337 TGGGAAGAAAGCCTTTCTTACAAAACCAATGCTTCAATATCATGTATCCTTATTAGGAGACTAAG
390 TGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCATGTATCCTTATTAGAAAACTAAG
*
492402 TT-TATGGTGTCTAATCCTA-
455 TTGT-TGGTGCCT-ATCCTAT
* * * *
492421 AAAATATTGGGGATTTGTATGACTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTAT
1 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
492486 AAAAAACGGTTGAAA-AATATGCCTTTGTTGTGACACTACAG-CATCAATGTCATT-TATCCTAA
66 AAAAAA-GGCTGAAAGAA-ATGCCTTTCTTGCGACACT--AGTCATCAATG-CATTGTATCCTAA
** * *
492548 TGA-AAGGAATGTGTTTTTTGGTTCCCGGTCATGAAAAGAATGGAGACTGTTACGAGAATCAGTG
126 TGAGAA-GAATGTG-TTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATG
* * * * *
492612 TTTGCCTTATTTAAGAGATGAACTTTTATTTTAA-GAAAAATAGGGCAA-AGAAAAGATTTTCAC
189 CTTGCCTTATTTAAGAGATAAACCTTAATTTTAATGAAAAATA-GGCAACA-AAAAGATTTCCAC
* * * *
492675 GTAAAAGAAAATCATCAATATCTTTTATCCCAATGAAGAGAGTATGTTTATAGTGCCTAATCACA
252 GCAAAA-AAAAACATCAATATCATTTATCCCAATGAAGAGAATATGTTTATAGTGCCTAATCACA
* * * *
492740 AAATGAGTGAAGATCATTACTAGAATCCATGTTTTTCCCAATTGAGAT-ACGAAGTTAGACTTTA
316 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAG-TCACGAACTTAGACTTTA
* ** *
492804 CAAAAATTGATTGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATTA
380 CAAAAATTGATGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCATGTATCCTTATTA
*
492869 GAAAACTAAGTTGTTGGTGCCTATTCTATTGTT
445 GAAAACTAAGTTGTTGGTGCCTATCCTA----T
* * *
492902 GAAAAGAATGGGGATTAGTCTGACTATTCATGTTTGTCCTATTTAAGGGACAAACTTTGATTCTA
1 -AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* *
492967 TCAAAAATGAG-TGAAAGAAATGCTTTTCTTG
65 T-AAAAAAG-GCTGAAAGAAATGCCTTTCTTG
492998 TGACCCCAAA
Statistics
Matches: 492, Mismatches: 64, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
473 8 0.02
474 83 0.17
475 32 0.07
476 105 0.21
477 180 0.37
478 2 0.00
482 74 0.15
483 8 0.02
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (473 bp):
AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
AAAAAAGGCTGAAAGAAATGCCTTTCTTGCGACACTAGTCATCAATGCATTGTATCCTAATGAGA
AGAATGTGTTTTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTACGAGAATCAATGCTTGCCT
TATTTAAGAGATAAACCTTAATTTTAATGAAAAATAGGCAACAAAAAGATTTCCACGCAAAAAAA
AACATCAATATCATTTATCCCAATGAAGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCACAATTGAGTCACGAACTTAGACTTTACAAAAATTGAT
GGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCATGTATCCTTATTAGAAAACTAAGT
TGTTGGTGCCTATCCTAT
Found at i:493167 original size:322 final size:317
Alignment explanation
Indices: 492725--493343 Score: 796
Period size: 322 Copynumber: 1.9 Consensus size: 317
492715 AGTATGTTTA
* * * *
492725 TAGTGCCTAATCACAAAATGAGTGAAGATCATTACTAGAATCCATGTTTTTCCCAATTGAGATAC
1 TAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTCCCAATTGAGACAC
* * * *
492790 GAAGTTAGACTTTACAAAAATTGATTGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATC
66 GAACTTAGACTTTACAAAAATAGATGGGAAGAAAGCCTTTCTTATGAAACCAAAGCACCAATATC
* ** *
492855 GTGTATCCTTATTAGAAAACTAAGTTGT-TGGTGCCTATTCTATTGTTGAAAAGAATGGGGATTA
131 GTGTATCCTTATGAGAAAACTAAGTT-TATGGTGCCTA----A-TCCTGAAAAGAATAGGGATTA
* *
492919 GTCTGACTATTCATGTTTGTCCTATTTAAGGGACAAACTTTGATTCTATCAAAAATGAG-TGAAA
190 GTATGACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAATG-GCTGAAA
* * *
492983 GAAATGCTTTTCTTGTGACCCCAAAGCGTCAATATCCTGTATCCTAATAAGGAGAATGTATTTG
254 GAAATGCTTTTCTTGCGACACCAAAGCGTCAATATCATGTATCCTAATAAGGAGAATGTATTTG
* * * *
493047 TAGTGCCTAATCAGAAAACGAATGAATATCGTTACTAGAATCCATGTTTGTCCCAATTGAGGCAC
1 TAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTCCCAATTGAGACAC
* * * * * * *
493112 TAACTTAGACTTTATAGAAATAGGTGGGAA-AAACGCCTTTCTTGT-AAAGCCAAAGCGCCAGTA
66 GAACTTAGACTTTACAAAAATAGATGGGAAGAAA-GCCTTTCTTATGAAA-CCAAAGCACCAATA
* * *
493175 TCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAGATAATAGGGATTAGTAT
129 TCGTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTAT
* * * * *
493240 GACTCTTCTTGTTTTTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGCTGAAAGAAAT
194 GACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCTGAAAGAAAT
*
493305 GCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCC
259 GCTTTTCTTGCGACACCAAAGCGTCAATATCATGTATCC
493344 GAATGAGAGA
Statistics
Matches: 256, Mismatches: 37, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
316 1 0.00
317 111 0.43
318 1 0.00
321 7 0.03
322 136 0.53
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (317 bp):
TAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTCCCAATTGAGACAC
GAACTTAGACTTTACAAAAATAGATGGGAAGAAAGCCTTTCTTATGAAACCAAAGCACCAATATC
GTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGA
CTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCTGAAAGAAATGC
TTTTCTTGCGACACCAAAGCGTCAATATCATGTATCCTAATAAGGAGAATGTATTTG
Found at i:494570 original size:476 final size:472
Alignment explanation
Indices: 493643--495034 Score: 1695
Period size: 476 Copynumber: 2.9 Consensus size: 472
493633 GAAAGCAATG
* * ** * *
493643 TTATGGTGCCTAATCCTAAAAAGAAT-GGGTATTATTAGGGCTATTCAAGTTTGTCTTATTCAAG
1 TTATGGTGCCTAATCCTGAAAAGAATAGGG-ATTAGTA-TACTATTCATGTTTGTCTTATTTAAG
* * * *
493707 AGACAAACTTTGATTCTATAAAAAATGGTTGAAAGAAATGCTTTTCTTGTGACACCAATGTGTTA
64 AGACAAACTTTGATTCTATAAAAAATGGTTAAAAGAAATGCTTTTCTTGCGACACCAAAGTGTCA
* * * * * *
493772 ATGTCACGTATCCTAACGAAAAGAATGTGTTTTTGGTTCTCAATCATGAAAAAAATGGTGACTGT
129 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGGAAAAAATGGAGACTGT
* * * *
493837 TACAAGAATTAATGCTTGCCTTATTTATGGGATAAACTTTAATTTTAAGGAAAATAGGGCAAAGA
194 TACAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAATG-
* * * ** *
493902 AAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATCATAACCAGGAGAATGTGTTT-GTA
258 AAAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGAGAATATGTTTAG-A
* * *
493966 GTGCCTAATCAGAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACG
322 GTGCCTAATC-GAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC-AGTTGAGGCATG
** * * * * * * *
494030 AACTTAGATTTTATAGAAATTGGTGAGAAAAAAGCCTTTCTTAGGAAGCCAGA-GCGTCAATATC
385 AACTTAGGCTTTACAAAAATTGGTG-GAAGAAAGCCTTTCTTACGAAACCA-ATGCTTAAATATC
494094 ATGTATCCTTATCAGAAGACTAAGT
448 ATGTATCCTTATCAGAAGACTAAGT
* * *
494119 TTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATATTTATTCATGTTGGTCTTATTTAAGA
1 TTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATA-CTATTCATGTTTGTCTTATTTAAGA
* * *
494184 GACAAACTTTGATTCAATAAAAAATGGTTAAAAGAAATGCTTTTCTTGCGGCACCAAAGCGTCAA
65 GACAAACTTTGATTCTATAAAAAATGGTTAAAAGAAATGCTTTTCTTGCGACACCAAAGTGTCAA
* *
494249 TGTCATGTATCCTAATGAAAGGAATGTGTTTTCGGTGCCCAATCATGGAAAAAATGGAGACTGTT
130 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGGAAAAAATGGAGACTGTT
* *
494314 ACAAGAATCAATGCTTGCCTTATTTAAGCGATGAGCTTTAATTTTAAGGAAAATAGGGCAATGAA
195 ACAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAATGAA
* * * *
494379 ATGATTTCCATGTAAAAGAAAAACTTGAATATCATTTATCCTAATGAGGAGAGTATGTTTAGAGT
260 A-GATTTCCATGCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGAGAATATGTTTAGAGT
* * * **
494444 GCCTAGTCGCAAAATGAATGAAGATCATTACTAGAATCCATCTTTGTCACAGCTGAACCATGAAC
324 GCCTAATCG-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAGTTGAGGCATGAAC
* * *
494509 TTAGGCTTTACAAAAATTGGTAGGAAGAAAGCTTTTCTCACGAAACCAATGCTTTAATATCATGT
388 TTAGGCTTTACAAAAATTGGT-GGAAGAAAGCCTTTCTTACGAAACCAATGCTTAAATATCATGT
* *
494574 ATCCTTGTTAGAAGACTAAGT
452 ATCCTTATCAGAAGACTAAGT
* * *
494595 TTATGGTGCCTAATCCTGAAAAGAATAGAGATTAGTATCACTATTCATGTTTATCTTATTT--TA
1 TTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTAT-ACTATTCATGTTTGTCTTATTTAAGA
* **
494658 G--------T-ATTCTATAAAAAA-CGACAGAAAGAAATGCTTTTCTTGCGACACCAAAGTGTCA
65 GACAAACTTTGATTCTATAAAAAATGGTTA-AAAGAAATGCTTTTCTTGCGACACCAAAGTGTCA
* ** * * *
494713 ATGTCATGTATCCTAATAAAAGGGTTTTGTTTTTGGTTCCCAATCAT-GAAAAGAATAGAGACTA
129 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGGAAAA-AATGGAGACTG
** * *
494777 TTATGAGAATCAATGCTTGCCTTGTTTAAGGGATGAACTTTAATTTTATGGAAAATAGGGCAACA
193 TTACAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGC-A-A
* * *
494842 T-AAAGATTTCCATGCAAAAGAGAAACATCAATATCATTTATCCTAATGACGAGAATATGTTTAT
256 TGAAAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGAGAATATGTTTAG
* * * * *
494906 AGTCCCTAATCATAAAATGAATGAACATCATTACTAGAATCTATGTTTGTCACAGTTGAGGTATG
321 AGTGCCTAATC-GAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAGTTGAGGCATG
* *
494971 AACTTAAGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCTTAAATATC
385 AACTTAGGCTTTACAAAAATTGGT-GGAAGAAAGCCTTTCTTACGAAACCAATGCTTAAATATC
495035 TTGAAAAGAA
Statistics
Matches: 792, Mismatches: 110, Indels: 39
0.84 0.12 0.04
Matches are distributed among these distances:
464 7 0.01
465 314 0.40
466 5 0.01
467 2 0.00
474 2 0.00
475 5 0.01
476 450 0.57
477 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
TTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATACTATTCATGTTTGTCTTATTTAAGAG
ACAAACTTTGATTCTATAAAAAATGGTTAAAAGAAATGCTTTTCTTGCGACACCAAAGTGTCAAT
GTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGGAAAAAATGGAGACTGTTA
CAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAATGAAA
GATTTCCATGCAAAAGAAAAACATCAATATCATTTATCCTAATGAGGAGAATATGTTTAGAGTGC
CTAATCGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAGTTGAGGCATGAACTTA
GGCTTTACAAAAATTGGTGGAAGAAAGCCTTTCTTACGAAACCAATGCTTAAATATCATGTATCC
TTATCAGAAGACTAAGT
Found at i:496103 original size:476 final size:474
Alignment explanation
Indices: 495101--501391 Score: 5370
Period size: 476 Copynumber: 13.4 Consensus size: 474
495091 ATGGCATATT
* * * *
495101 CTAATGAAAGGAATATGTTTTTGGTTCTTAATCATG-AAAGAATGGTGACTATTGCGAGAATCAA
1 CTAATGAAAGGAATATGTTTTTGGTTC-CAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * *
495165 TGCTTACCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAT
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTAT
* * * **
495230 GCAAAAGAAAATCATCAATATAATTTATCCTAATAAGGAGAATGTGTTTGTACCGCCTAATCACA
130 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * *
495295 AAATAAATGAAGATCATTACTAGAACCCATGTTTGTCCCAATTGAGACATGAACTTAGACTTTAC
195 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTAC
* * *
495360 -AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATATATCCTTATGGG
260 AAAAATTGGTGGGAA-AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* * * * *
495424 AAGACTAAGTTTATGGTGCCTATTCGTGAAAAAAATGGGGATTAGTATAACTATTCATGTTTGTT
324 AAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * * *
495489 TTCTTTAAGAGACAAACTTTAATTCAATCAAAAACAGTTGAAAGAAATGTTTTTCTTGCGACACC
389 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATC
** *
495554 ATTGTGTCAATGCCATGTATC
454 AAAGTGTCAATGTCATGTATC
* * * * *
495575 CTAATGGAAGGAATGTGTTTTTGGTTGCCAATCATG-AAAGAATGGTGACTATTACGAGAATTAA
1 CTAATGAAAGGAATATGTTTTTGGTT-CCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* *
495639 TGCTTGCCTTATTTAGGGGATGAACTTT-AGTTTTAAGGAAAATAGGGCAACGAAAAGATTTCTA
65 TGCTTGCCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTA
* * * * * **
495703 TGCAAAAGAAAATCATCACTATAATTTATCTTAATAAGGAGAATGTGTTTGTTTTGCCTAATCAC
129 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
495768 AAAATGAATGAAGATCATTACTAGAACCCTTGTTTGTCATAATTGAGGCACGAACTTAGACTTTA
194 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTT-
*
495833 ACAAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATT
258 ACAAAAATTGGTGGG-AAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * *
495898 AGAAAACTAAGTTTATGGTGCCTATTCTCGAAGAGAATAGGGACTAGTATGACTATTCATGTTTG
322 AGAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* * * *
495963 TCCTATTTAAGAGGCAAACATTGATTCTATCAAAAACGGTTGAAAGAAATGCTGTTCTTGCGACA
387 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
** *
496028 -CAAATGTGTCAATGTTGTCTATC
452 TCAAA-GTGTCAATGTCATGTATC
* * * * * *
496051 CTATTGAAAGGAATGTGTTTTTGGTTCCAATTATGAAAAGAATGGAGACTATTATGAGAATCACT
1 CTAATGAAAGGAATATGTTTTTGGTTCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
* * * * * *
496116 GCTTGCCTTATGTAAGGGAT-ACACTTTAATTTTGAGGAAAATCA-AGCGAAGAAAAAATTT-TC
66 GCTTGCCTTATTTAAGGGATGA-ACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCT-
* ***
496178 ATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGAGAAATCA
128 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
** * * *
496243 CAAAGCGAATGAAGATCATTACTAAAATTCATGTTTGTCACAATTGAGGCACGGACTTAGACTTT
193 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTT
* * * * * ** ** * *
496308 AGCAGAATTTGAT-GGAAGAAAGCTTTTCTTATGAAACCAAAGTGTCAGCATCGTATATCTTTAT
258 A-CAAAAATTGGTGGGAA-AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * * * *** *** *
496372 GGGAAGAATAGGGATTA-GTATGACTATTCATG-TTTG--T-CTTATTTAAG-A-GAAACT-TTG
321 GAGAAGACTA-AGTTTATG-GTGCCTAATCTTGAAAAGAATGGGGA-TT-AGTATG--ACTATTC
* * ** * * ** * * ** ** * * **
496429 AT-TCTATCAAAAATGGCTGAA-AGA-AATGCTTTTCTTGCGACCCGAAA-GCATCAATGTCATG
380 ATGTTTGTC--TTAT---TTAAGAGACAA-ACTTTGATT-CTATCAAAAACGGTTGAAAGAAATG
* * * *
496490 --TATCTT---A-ATGAAA-TG--AATGTGCTTCTAGTTCC
438 CTTTTCTTGCGACATCAAAGTGTCAATGT-CATGTA--T-C
* * * **** * ** ** * * * *
496522 CAATCATGAAAAGAAT-GGAGACT-GTT---ATGA-G-AATCAATGCTTGCCTTATTTAAG-GGA
1 C--TAATGAAAGGAATATGTTTTTGGTTCCAATCATGAAAAGAATG-GAGAC-T-GTTACGAGAA
* ** *** * ** * * * *
496579 TGAA--CTTTGATTTTAAGCAAAATAGGGCAAAGAA--AAGA-TTTACATGCAAA-A--GAAAAT
61 TCAATGC-TTG-CCTT-A--TTTA-AGGG--ATGAACTTTGATTTTA-AGGAAAATAGGGCAAAG
* * * * * * * * * *
496636 AATCAATATCATT-TATCCTAATGAGGAGAAT-GT-GAT-T-A-TAATGCCTAATCA-CA-AA-A
117 AA--AAGAT--TTCTATGC-AA--AAGAAAATCATCAATATCATTTAT-CCTAATGAGGAGAATG
** **** * * * * *
496692 TG---A-A-TG-AAAATCA-TTGCTAGAATCCATG-T--TT-CTCACAAT-TAAG---G-CACGA
174 TGTTTATAGTGCCTAATCACAAAAT-GAAT-GAAGATCATTACT-AGAATCCATGTTTGTCAC-A
* * * * * *
496741 ACTT-A-G---G--CTT----TATA-AAAATTGGTG-GGAAGAAAGCCTTTCTTACGAAACCAAT
235 A-TTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAAAAGCCTTTCTTACGAAACCAAA
* * * * *
496793 GCTTTAATATCGTGTATCCTTATTAAAAGACTAAGTTTGTGGTGCCTAATCTTGAAAAGAATGGG
298 GCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGG
* * * * * *
496858 GATTAGTAAGATTATTAATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTAGCAAAAACGATT
363 GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * ** * *
496923 GAAAGAAATACTTTTCTTGCAACATCAAAGCCTCATTGTCATGTGTC
428 GAAAGAAATGCTTTTCTTGCGACATCAAAGTGTCAATGTCATGTATC
* *
496970 CTAATAAAAGGAATATGATTTTGGTTCTCAATCATGAAAAGAATGGAGACTGTTACGAGAATTC-
1 CTAATGAAAGGAATATGTTTTTGGTTC-CAATCATGAAAAGAATGGAGACTGTTACGAGAA-TCA
* * * *
497034 ATGATTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAAGACAAGATTTAC
64 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTT-C
* * * * *
497098 -ATGTAAAAGAAAATCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATC
127 TATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * *
497162 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCAATTAAGGCACGAAGTTAGACTT
192 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
* * * ** * * * *
497227 TGCAAAAATTGGTGGGAGGAAAGCCTTACTTGTGAAATCAAAGCATCAACATCATG-AGACC-TA
257 TACAAAAATTGGTGGGA-AAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA-TCCTTA
* * * *
497290 AGAGAAGACTATGTTTATGGTGCCTAATCCTTG-AAAGAATGGGGGTTAGTATGACTCTTCATGT
320 TGAGAAGACTAAGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGACTATTCATGT
497354 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC--------G----G--TTTCTTGCG
384 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * ** *
497405 ACACCAATGCATCAATGTCATGTATG
449 ACATCAAAGTGTCAATGTCATGTATC
* * * ** *
497431 CTGATGAAAGGAATATGTTTTTGGTTCCGACTCATGAAAAGAATAGAGACAATTATGAGAATCAA
1 CTAATGAAAGGAATATGTTTTTGGTTCC-AATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * * * * *
497496 TGCTTGCCTTATTTAAGGGATGAACATTAATTTTCAGTAAAACAAGGCAAAGAAAAGATTTCCAT
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTAT
* * * *
497561 GC-AAA-AAAATCACCAAT-TCATTTATTCTAATGAGGAGAATGTGTTTAAAGTGCCTAATGACA
130 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * *
497623 AAATGAATGAAGGTCATTACTAGAATCCATGTTTGT-ACCAGTAGAGGCACAAACTTAGACTTTA
195 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA-CAATTGAGGCACGAACTTAGACTTTA
* * * * *
497687 TAAAAATTGATGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATTAATATCGTGTATCCTTATTA
259 CAAAAATTGGTGGGAA-AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGA
* * * * *
497752 GAAGACTAAGTTTATGGTGCATAAATC-TGAAAAGGATAGGGATTAGTATGGCTATTCATGTTTA
323 GAAGACTAAGTTTATGGTGCCT-AATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* * * * *
497816 TCTCATTTAAGAGATAAACTTTGATTCTATCAAAAATGGATGAAAGAAATGCTTTTCTTGCGACC
387 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * *
497881 CCAAAATGTCAATGCCATGTATC
452 TCAAAGTGTCAATGTCATGTATC
* * * * *
497904 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATAATGAAAAGAATTGAGATTGCTACGAGAATCAA
1 CTAATGAAAGGAATATGTTTTTGGTT-CCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * **
497969 TGCTTGCCTTATTTAAGGGATCAACTTTGATTTTAAGAAAAATAGGGCAAAAAAAAGATTTAAAT
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTAT
* * * * *
498034 ACAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGTTTATCGTACCTAATCACA
130 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * *
498099 AAATGAATGAAGATCGTTACTAGAATCTATGTTTTTCACAATTGAGGCACGAACTTAGGCTTTAC
195 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTAC
** * * * * * *
498164 AAAAATTGGTATGAAGAAAGCCTTTCTTACGAAACTAATGCTTCAATATCATGTATCCTTA-CAA
260 AAAAATTGGTGGGAA-AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* * * *
498228 AAGACTGAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGATTATTCATGTTTGTC
324 AAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * **
498293 TTATGTAAGAGACAAACTTTGATTCTATAAAAAATGCTTGAAAGAAATATTTTTCTTGCGACATC
389 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATC
498358 AAAGTGTCAATGTCATGTATC
454 AAAGTGTCAATGTCATGTATC
*
498379 CTAATGAAAGGAATGA-GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCA
1 CTAATGAAAGGAAT-ATGTTTTTGGTT-CCAATCATGAAAAGAATGGAGACTGTTACGAGAATCA
* * * * *
498443 ATGCTTACCTTATTTAAGGCATGAACTTTAATTTTAAGAAAAACAGGGCAAAGAAAAAGATTT-T
64 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAAGATTTCT
* * * *
498507 CACGCAAAAGAAAATCATCAATACCATTTATCCTAATGAGGAGGATATGTTTATAGTGCCTAATC
128 -ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
** * * *
498572 ACAAGGTGAACGAAGATCA-T--TAGAATCCATGTTTGTCACAAATGAGGCACGAACTCAGACTT
192 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
* *
498634 TACAAAAATTGGTGGGAAAAAGCCTTTCTTATGAAACCAAAGCATCAATATCGTGTATCGTTATG
257 TACAAAAATTGGTGGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * *
498699 AGAGGACTAATTTTATGGTGCCAAATCTTGAAAAGAATGGGGATAAGTATTG-CTATTCAGGTTT
322 AGAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTT
* * * * * * * *
498763 ATCCTATTTAAGAGACAAACTTTGATTCTACCAAAAATGATTGAAAGAAATACTTTTCTTGTGGC
386 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * *
498828 TTTAAAGTGTCATTGT-ATTGTATC
451 ATCAAAGTGTCAATGTCA-TGTATC
* * * * *
498852 CCAATGAAAGGAATATGATTCTGGATCCTAATCATGAAAAGAATGGAGACTGTTACGAGAATCTA
1 CTAATGAAAGGAATATGTTTTTGGTTCC-AATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * * *
498917 TGCTTGCCTTAGTTAAGGGTTGAACTTTGATTTTAACGAACACTA-AGCAAAGAAAAGATTTAC-
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAA-AATAGGGCAAAGAAAAGATTT-CT
* * * * *
498980 ATGCAGAGGAAAATCATCAATATCATTTACCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCA
128 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * ** * * * *
499045 CAAAACGAACGAAGATCATTACTAGAATCCATGCCTGTCACAATTAAGGTATGAAGTTAGACTTT
193 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTT
* * * * ** * * * * * * * * *
499110 AGAAAAATTGGTAGGAGGAAATCCTCACATGCAAAATCAAAGCATCAACATCATGCAGT-TTTTT
258 ACAAAAATTGGTGGGA-AAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA-TCCTTAT
* * *
499174 AAGAAGACTATGTTTATGGTGCCTAATCCTTG-AAAGAATAGGGATTAGTATGACTATTCATGTT
321 GAGAAGACTAAGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * *
499238 TGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCATGTGA
385 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* **
499303 CACCAAAGCATCAATGTCATGTATC
450 CATCAAAGTGTCAATGTCATGTATC
* * * * * * * * *
499328 CTATTGAATGGAGTATGCTTTTCGTTCCCAATCATGAAAGGAATAGAGACTGCTATGAGAATCAA
1 CTAATGAAAGGAATATGTTTTTGGTT-CCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* *
499393 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGTAAAGAAAAGATTTCTAT
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTAT
* * * * * *
499458 GCAAAAGAAAATCATCAATTTCATTTATCCTAATAAGGAGAATGTGTTTGTAGAGCCTAATTAGA
130 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * ** *
499523 AAATGAATGAAGATCATTATTAGAATCTATGTTTGTTACAAATGAGGCGTGAACATAGACTTTAC
195 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTAC
* * * * * * * *
499588 AAAAATTGGTGGAAAAAAATCCTTTTCTTACAAAACAAAAACATAAATATCGCGTATCTTTATGA
260 AAAAATTGGTGG-GAAAAAGCC-TTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGA
** * * * * * ** * *
499653 GAAGACTAAGTTTATCATGCCAAATCCTGAAAATAATCGAGATTTTTATGACCATTCTTGTTTGT
323 GAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
*
499718 CTTATTTAGGAGA-ACAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG---
388 CTTATTTAAGAGACA-AACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
499779 ----A-TGTCAATGTCATGTATC
452 TCAAAGTGTCAATGTCATGTATC
* * *
499797 CTAATAAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCCA
1 CTAATGAAAGGAATATGTTTTTGGTT-CCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * *
499862 TGTTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAATATTT-TCA
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCT-A
* * * * *
499926 TTCAAAAGAAAATCATTAATATCATTTATCATAATAAGGAGAATGTGTTTATAGTGCCTAATCAG
129 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* *
499991 AAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCACAAATGAGGCACGAACTTAGACTTTA
194 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTA
* * *
500056 CAAAAATTGGTGGGAAGAAAGCCTTTCTGATGAAACCAAAGCATCAATATCGTGTATCGTTATGA
259 CAAAAATTGGTGGGAA-AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGA
* * * * * *
500121 GAGGACTAATTTTATGGTGCCAAATCTTGAAAAGAATGGGGATAAGTATTG-CTATTCAGGTTTA
323 GAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTTG
* * * * * *
500185 TCCTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATTGAAAGAAATACTTTTCTTGTGGCA
387 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
** * *
500250 TCAAAGCATCATTGTCTTGTATC
452 TCAAAGTGTCAATGTCATGTATC
* * * * *
500273 CCAATGAAAGGAATATGATTCTGGATCCCAATCATGAAAAGAATGGCGACTGTTACGAGAATTC-
1 CTAATGAAAGGAATATGTTTTTGG-TTCCAATCATGAAAAGAATGGAGACTGTTACGAGAA-TCA
* * * * *
500337 ATGCTTGCCGTAGTTAAGGGATGAACTTTGATTTTAACGAAAACT-TGGCAAAGAAAATATTTAC
64 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTT-C
* *
500401 -ATGCAAAGGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATC
127 TATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * ** * * * *
500465 ACAAAACGAACGAAGATCATTACTAGAATCCATGCCTGTCACAATTAAGGTATGAAGTTAGACTT
192 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTT
* * * * ** * * * * * * * * *
500530 TAGAAAAATTGGTAGGAGGAAATCCTCACATGCAAAATCAAAGCATCAACATCATGCAGT-TTTT
257 TACAAAAATTGGTGGGA-AAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA-TCCTTA
* * * * *
500594 TAAGAAGACTATGTTTACGGTGCCTAATCCTTG-AAAGAATAGGGATTAGTATGACAATTCATGT
320 TGAGAAGACTAAGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGACTATTCATGT
* * * * * *
500658 TTGTATTATTTAAGAGACAAACATTGATTCTATCAAAAATGGTTGAAAGAAATGCATTTCGTGCA
384 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* **
500723 ACACCAAAGCATCAATGTCATGTATC
449 ACATCAAAGTGTCAATGTCATGTATC
* * * * * *
500749 CTATTGAATGGAATATGCTTTTGGTTCCCAATCATGAAAGGAATGGCGACTGTTATGAGAATCAA
1 CTAATGAAAGGAATATGTTTTTGGTT-CCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAA
* * ** *
500814 TGCTTGCCTTATTTAAGGGATGAACTTTGTTTTTAAGGAAAATTGGATAAAGAAAAGATTTCCAT
65 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTAT
* * * * * * *
500879 GCAAAAGAAAAT-ACTCAATATTATTTATCCTAATAAGGGGAATTTGTTTGTAGAGCCTAATCAG
130 GCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * *
500943 AAAATAAATGAAGATCATTATTAGAATCCATGTTTGTCACAAATGAGGCATGAA-TATAGACTTT
194 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACT-TAGACTTT
* * * *
501007 ACAAAAATTGGT-GGAAAGAAACCATTTTCTGATGAAACCAAAGCATCAATATCGTGTATCGTTA
258 ACAAAAATTGGTGGGAAA-AAGCC--TTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * *
501071 TGAGAAGACTAATTTTATGGTGCCAAATCTTGAAAAGAATGGGG-GTAGGTATTG-CTATTCAGG
320 TGAGAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTA-GTA-TGACTATTCATG
* * * * * * *
501134 TTTATCCTATTTGAGAGACAAACTTTGATTGTATCAAAAATC-ATTGAAAGAAATACTTTTCTTA
383 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTTGAAAGAAATGCTTTTCTTG
* * * * * *
501198 TGGCATTAAAGCGTCATTGTCTTGTATC
447 CGACATCAAAGTGTCAATGTCATGTATC
* * * * * * *
501226 CCAATGAATGGAATATGATTCTAGATCCTAGTCATGAAAAGAATGGAGACTGTTACGAGAATTC-
1 CTAATGAAAGGAATATGTTTTTGGTTCC-AATCATGAAAAGAATGGAGACTGTTACGAGAA-TCA
* *
501290 ATGCTTGCCTT-GTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAAGAAAAGATTTAC
64 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTT-C
* *
501353 T-TGCAAAGGCAAATCATCAATATCATTTATCCTAATGAG
127 TATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
501392 AAGTGAAAGC
Statistics
Matches: 4651, Mismatches: 927, Indels: 476
0.77 0.15 0.08
Matches are distributed among these distances:
442 9 0.00
443 28 0.01
444 52 0.01
445 19 0.00
446 26 0.01
447 15 0.00
448 20 0.00
449 22 0.00
450 8 0.00
451 15 0.00
452 17 0.00
453 7 0.00
454 6 0.00
455 5 0.00
456 4 0.00
457 6 0.00
458 151 0.03
459 103 0.02
460 23 0.00
461 137 0.03
462 11 0.00
463 6 0.00
464 5 0.00
465 4 0.00
466 7 0.00
467 13 0.00
468 154 0.03
469 277 0.06
470 10 0.00
471 25 0.01
472 145 0.03
473 436 0.09
474 265 0.06
475 487 0.10
476 1768 0.38
477 361 0.08
478 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
CTAATGAAAGGAATATGTTTTTGGTTCCAATCATGAAAAGAATGGAGACTGTTACGAGAATCAAT
GCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
AATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTACA
AAAATTGGTGGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
GACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATCAA
AGTGTCAATGTCATGTATC
Found at i:502221 original size:21 final size:20
Alignment explanation
Indices: 502195--502250 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
502185 CTGCCAGTTT
**
502195 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA-TTGAA
*
502216 CATGTATCGATGCAA-TGAA
1 CATGTATCGATACAATTGAA
502235 CATGTATCGATACAAT
1 CATGTATCGATACAAT
502251 GTATCGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 16 0.53
21 14 0.47
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:502254 original size:13 final size:13
Alignment explanation
Indices: 502236--502262 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
502226 TGCAATGAAC
502236 ATGTATCGATACA
1 ATGTATCGATACA
502249 ATGTATCGATACA
1 ATGTATCGATACA
502262 A
1 A
502263 AGCAGCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:502842 original size:42 final size:40
Alignment explanation
Indices: 502754--502844 Score: 103
Period size: 39 Copynumber: 2.2 Consensus size: 40
502744 TTTTTTTCTT
* * * *
502754 TAAAAAAATTCTCCCCCTTGAACGATTATCTCCTCCTTTA
1 TAAAAAAATTCTCCCCCTTAAACAATTATCTCCCCCCTTA
502794 TAAAAAAA-TCTCCCCCTTAAACAATTATCTTCTCCCCCTTA
1 TAAAAAAATTCTCCCCCTTAAACAATTATC-TC-CCCCCTTA
**
502835 TGTAAAAATT
1 TAAAAAAATT
502845 TATTTTCACA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 19 0.45
40 10 0.24
41 12 0.29
42 1 0.02
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (40 bp):
TAAAAAAATTCTCCCCCTTAAACAATTATCTCCCCCCTTA
Found at i:504691 original size:13 final size:13
Alignment explanation
Indices: 504673--504700 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
504663 AATAGTACCT
504673 AATGTATCGATAC
1 AATGTATCGATAC
504686 AATGTATCGATAC
1 AATGTATCGATAC
504699 AA
1 AA
504701 GGAATGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Done.