Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold331
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1394875
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 3 of 8
Found at i:506922 original size:13 final size:13
Alignment explanation
Indices: 506904--506930 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
506894 ACATGCTGCT
506904 TTGTATCGATACA
1 TTGTATCGATACA
506917 TTGTATCGATACA
1 TTGTATCGATACA
506930 T
1 T
506931 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:506927 original size:33 final size:32
Alignment explanation
Indices: 506885--506949 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
506875 CACACCTAGA
*
506885 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATG-TGCATTGTATCGATACAT
* *
506918 TGTATCGATACATGTTCATTGTATTGATACAT
1 TGTATCGATACATGTGCATTGTATCGATACAT
506950 GGACAAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGTATCGATACAT
Found at i:507030 original size:20 final size:20
Alignment explanation
Indices: 507001--507053 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
506991 TATCACTTTT
*
507001 TGTATCGATACATGGTATAA
1 TGTATCGATACATGGTACAA
*
507021 TGTATTGATACATGGTACAA
1 TGTATCGATACATGGTACAA
*
507041 TGTATCAATACAT
1 TGTATCGATACAT
507054 TGTATCGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATGGTACAA
Found at i:509384 original size:32 final size:33
Alignment explanation
Indices: 509326--509388 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
509316 CACCCAAATG
*
509326 TATCGATACATGCTGCTTTGTATCGATACATTA
1 TATCGATACATGCTGCATTGTATCGATACATTA
*
509359 TATCGATACATG-TTCATTGTATCGATACAT
1 TATCGATACATGCTGCATTGTATCGATACAT
509389 GGACAAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (33 bp):
TATCGATACATGCTGCATTGTATCGATACATTA
Found at i:509481 original size:33 final size:32
Alignment explanation
Indices: 509439--509505 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 32
509429 CTATCACTAT
509439 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
*
509472 TTGTATCGATAGATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
509505 T
1 T
509506 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:509555 original size:52 final size:52
Alignment explanation
Indices: 509491--509609 Score: 238
Period size: 52 Copynumber: 2.3 Consensus size: 52
509481 TAGATGAAGA
509491 AATGTATCGATACATAGCTTGTAACGGCTATAAACGGCTATAATTTCAAATC
1 AATGTATCGATACATAGCTTGTAACGGCTATAAACGGCTATAATTTCAAATC
509543 AATGTATCGATACATAGCTTGTAACGGCTATAAACGGCTATAATTTCAAATC
1 AATGTATCGATACATAGCTTGTAACGGCTATAAACGGCTATAATTTCAAATC
509595 AATGTATCGATACAT
1 AATGTATCGATACAT
509610 TATGAATTGT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (52 bp):
AATGTATCGATACATAGCTTGTAACGGCTATAAACGGCTATAATTTCAAATC
Found at i:513146 original size:13 final size:13
Alignment explanation
Indices: 513128--513154 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
513118 TACAATAAAC
513128 ATGTATCGATACA
1 ATGTATCGATACA
513141 ATGTATCGATACA
1 ATGTATCGATACA
513154 A
1 A
513155 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:513169 original size:33 final size:32
Alignment explanation
Indices: 513109--513173 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
513099 CAATTTGTCC
513109 ATGTATCGATACAATAAACATGTATCGATACA
1 ATGTATCGATACAATAAACATGTATCGATACA
*
513141 ATGTATCGATACAA-AGCAGCATGTATCGATACA
1 ATGTATCGATACAATA--AACATGTATCGATACA
513174 TCTGGGTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 1 0.03
32 14 0.47
33 15 0.50
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (32 bp):
ATGTATCGATACAATAAACATGTATCGATACA
Found at i:519467 original size:951 final size:952
Alignment explanation
Indices: 513464--529067 Score: 20390
Period size: 952 Copynumber: 16.4 Consensus size: 952
513454 CCTAACAAGA
* * * *
513464 AGAATGTGTTTATAGTGCCTAATCACAAAATTAACGAAGATCATTACTAGAATCCATGTTTATCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * ** * ** *
513529 CAATTGAGGTACGAAGTTAGACTTTACAAAAATTGGTAGGAGGAAAGCCTCACTTGCGAAATCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* * * * * * * * * * * ** * *
513594 AGCATCAACATCATGCAGT-TTTTTGAGAAGACTATGTTTATGGTGTCAAATCCTTGAAAGAATG
131 TGCTTCAATATCGTGTA-TCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTA
* * * * * * **
513658 GGGATTAGGATGACTATTCATATTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACAG
195 GGGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGG
* * ** * * * * * * *
513723 TTGAAAAAAATGCTTTTCGTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAATGGAATAT
260 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
** * * *
513788 GTTTTTGGTTCCCAATCATGGTAGGAATGGAGACTGTTATGAGAATCAATGCCTGCCTTATCTAA
325 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* * * * * *
513853 GGGATGAACTTTGATTTTAAGGGAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
390 GGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATT
* * ** * * * ** * **
513918 AATATCATTTATCCTAACAAGGAGAATGTGCTTGTAAAGCCTAATCAGAAAATGAATGAAGATCA
455 AACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCA
* * ** * * * * * *
513983 TTATTAGAATCCATGTTTGTCACAAATGAGGCACGAACATAGACTTTACAAAAATTGGTGGAAAG
520 TTACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAG
* * * * * ** *
514048 AAAC-CCTTTTCTTACGAAACAAAAGCATCAATATCATGTATCTTTATGGGAAGACTAAGTTTAT
585 -AACGCC-TTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGT
* ** * * *** ** * *
514112 AGCACCAAATCCTGAAAATAATCAAGATTAGTATCACTATTC-TTGTTTGTCTTATTTAAGAGAC
648 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATT-TTTGTCTTATTTAAGCGAC
* * * * * * * * *
514176 AAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTCCGACAAC-AATGTGTCAATG
712 AAACTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAAT-CGTCATTG
* * * * * *
514240 TCATGTATCCTAATGAAAGGAATGTGTTTTTCGTTCCCAATCATGAAAAAAATAGAGACTGTTAC
776 TCATGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTAC
* * * * * * ** * *
514305 TAGAA-TCAATGTTTACCTTATTTAAGGGATGGACTTT-AATTTAGTGAAA-ATAAGGTAAAGAA
841 GAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCT-AGGCAAAGAA
* * * * * * * *
514367 AAAATTTCCATTCAAAAGAAAGTCATCAATATCATTTATCCTGAA-AAGA
904 AAGATTTACATGCAAAGGAAAATCATCAATATCCTTTATCCT-AATGAGG
* * *
514416 AGAATGTATTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
514481 CAAATGAGGCACGAACTTAGACTTTACTAAAA-TTGGTGGGAAGAAAGCCTTTCTTATGAAATCA
66 CAATTGAGGCACGAACTTAGGCTTTAC-AAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCA
* * * * * * * * * *
514545 AAGCATCAATATCGTGTATCGTTATGAGAAGACTAAGTTTACGGTGCCAAATCTTGAAAAGAATG
130 ATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTA
* * * * *
514610 GGGATAAGTATTGA-TATTCAAGTTTGTCTTATATAAGAGGCAAACTTTGATTCTATCAAAAA-G
195 GGGATTAGTA-TGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATG
* ** * ** * * *
514673 TGTTGAAAGAAAT-GCTTTCTTGCGACCCCAAAACGTCAATGCCATGTATCCTAATGAAAGAAAT
259 -GATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* ** * * * * **
514737 GTGTTTTTGGTTCCTAGCCATTAAAATAGTGGAGACTATTATGAGAATTTATGCTTGCCTTATTT
323 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
* * * * * * * *
514802 AAGGGATGGACTTTAATTTTAAAGAAAATAAGGCAAGGAAACAG-TTTACATGCTAAAGAAAATT
388 AAGGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAA-AGATTTCCATGCAAAAGAAAATC
* * * * ** *
514866 ATCAATATCTTTTATCCTAAT-AGGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAGG
452 ATTAACACCATTTATCCTAATGA-GGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAG
* ** * * ** * *
514930 ATCATTACTAGAATCCATGTTTGTCACT-ATTAAGGCACAAAGTTAGACTTTACAAAAATTGGTC
516 ATCATTACTCGAATCCACATTTGTCA-TAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTG
* * * * * * * * * * * * *
514994 AGAGGAAAGCCTTACTTACAAAACCAAAGCATCAACAACATATAGT-CTTATAAGAAGACTATGT
580 GGAAGAACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTA-TCCTTATTAGAAGACTAAGT
* * * ** *
515058 TTATGGTGCCTAATCCTTG-AAAGAATGGGGATTAGTAGGACTATTCAAGTTTGTCTTATTTAGG
644 TTGTGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAG
* * * * * * *
515122 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATAC-TTTCTTGCGACA-CCAGTGCATC
708 CGACAAACTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAAT-CGTC
* * * * * * * * *
515185 AATGTCGTGTATGCTAATGAAAGGAGTGTGTTTTTGGTTTCAAATCATGAAAAG-A-GTAGACTA
772 ATTGTCATGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTA
* * * * * * *** *
515248 TTATGAG-ACTCAATGCTTGTCTTATTTAAGGGATGAACTTTAATTTTTA-GTAAAAAAAGGTAA
837 TTACGAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACG-AAAGCTAGGCAA
* * * * * * * * *
515311 AGAAAAGATTTCCATGCAAAAGAAAATCACCAATGTCATTTTTCCTACTAAAG
900 AGAAAAGATTTACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* * * * * * * * * *
515364 AGAATGTGTTTAAAGTACCTAGTCAGAAAATGAGTGAAGGTCAGTACTAGAATCCATGCTTATC-
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * * * *
515428 CAGTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAACTTTTCTTACGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* * ** *
515493 AGCATT-AATATCGTGTAT-C-----------C----TTTATGGTGCATAAAT--TTGAAAGGGA
131 TGC-TTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCT-AATCCTAAAAAGAG-
* ** * * * *
515539 TAAGGATTAG-ATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATAAAAAAA
193 TAGGGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTAT-CAAAAA
** * * * ** * *
515603 TGGATGAAAGAAATGCTTTTCTTGCGAC-CCTAAAGTGTCAATACCATGTATCCTATTGAATGGA
257 TGGATGAAAGAAATATTTTTCTTGCCACATC-AAAGCGTCAATGTCATGTATCCTAATGAAAGGA
* * * * ** *
515667 ATGTGTTTTTGGTTCCCAATAATGAAAAAAAAAAAGGAGATTGTTCGGGGAATCAATGCTTGCCT
321 ATGTGTTTTTGGTTCCCAATCATG---AAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCT
* * * * * * * *
515732 TATCTAAAGGATCAACTTTGACTT-TAAGGAAAATAGGGCAAGGAAAATATTTCAATTCAAAAGA
383 TATTTAAGGGATGAACTTT-AATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * ** *
515796 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGATT
447 AAATCATTAACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAAT
* ** * * *
515861 GAAGATCATTACTAGAATCCATGTTTGCCATAATTGAGGCATGAACTTAGGCTTTACAAAAATTG
512 GAAGATCATTACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTG
* * *
515926 GTGGGAAGAGA-GCCATTCTTACGAAACCAATGCTTCAACATCGTGCATCCTTATTAGAAGACTA
577 GTGGGAAGA-ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTA
* * * * * * *
515990 AGTTTATGGTGCTTAATCCTGAAAAGTATGGGGATTAGTATGATTATTCATGTTTATCTTATGTA
641 AGTTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTA
* * * * * * * * * *
516055 AGAGACAAATTTTGGTTCTATCAAAAATGGTTGAAAGAAATATTTTTCTTGCGACACCAAAGCGT
706 AGCGACAAACTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGT
* * * *
516120 CAATG-CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCACGAAAAGAATGGAGACT
771 CATTGTCATGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACT
* * ** * * * * * *
516184 GTTATGAGAA-TCAATGCTTATCTTATTTAAAGGATGAACTTTAATTTTGAGGAAA-ATAGGGCA
836 ATTACGAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTA-GGCA
* * * * * * *
516247 AAGAAAAGATTTCCATACAAAAGAAAATCTTAAATA-CCATTTATCTTAATAAGG
899 AAGAAAAGATTTACATGCAAAGGAAAATCATCAATATCC-TTTATCCTAATGAGG
* ** * ** ** *
516301 GGAACATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTAGAATCCACATTTGCCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * * * *
516366 TAATTGAGTCATGAACATAGGCTTTATAAAAATTGGTGGGAAGAACGCCTTTCTTACGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* * * * * * *
516431 TGCTTCAATGTCGTGTATCCTAATTAGAAGACTAAGTTTGTGGTGCCTAGTCCTAAAAAAAATAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
* * * * * * *
516496 GGATTAGTAAGATTATTCATTTTTCTCTTATTTAAGAGACAAACTTTGATTCTGTTAAAAA-CGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
* * * * * * *
516560 TTGAAAGAAATACTTTTCTTGCGACATCAAATCGTCATTGTCGTATATCCTAATGAAAGGAATAT
261 -TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
** * * * * * * * * * *
516625 AATTCTAGTTCCCAGTCTTGAAAATAATGGAGGCTGTTACGAGAATTC-TTACTTGCCTTAGTTA
325 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATTTA
* * * * * * *
516689 AGGGATGAACTTTGATTTTAAACGAAAACTA-GGAAAAGAAAAGTTTTACATGCAAAGGAAAATC
389 AGGGATGAACTTTAATTCT-AAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * * * ** *
516753 ATCAATATCATTTAACCTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGGATGAAGA
452 ATTAACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGA
* ** * * *
516818 TCATTACTAGAATCCATGTTTGTCACAATTAAGGCACGAACTTAGGCTTTACAAAAATTGGTGGG
517 TCATTACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGG
* * *
516883 AAGAAAGCCATTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTA
582 AAGAACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTG
** * * * * *
516948 TGGTGCCTAATCCAAAAAAGAATGGGGATTATTATGATTATTCATGTTTGTCTTATGTAAGAGAC
647 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGAC
* * * * * * * * * * * *
517013 AAACTTTGATTCTATCAAAAATGGTTGAAAGAAATATTTTTCTTTCGACACCAAAGCATTAATGC
712 AAACTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGT
* * * * * *
517078 CATGTATCCAAATGAAAGGAATATGTTTTTGGTTCTCAATCATGAAAAGAATGGAGACTGTTATG
777 CATGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACG
* * * * * * *
517143 ATAA-TCAATGCTTGCTTTATTTAAGGGATGAACTTTAATTTTAAGGAAA-ATATTGCAAAGAAA
842 AGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTA-GGCAAAGAAA
* ** *
517206 ATATTT-CTATGCAAAAAAAAATCATCAATA-CCATTTATCCTAATAAGG
905 AGATTTAC-ATGCAAAGGAAAATCATCAATATCC-TTTATCCTAATGAGG
* * ** **
517254 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGA-CGATTAC-AGGAATCCACATTTGT
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATC-ATTACTA-GAATCCATGTTTGT
* * * *
517317 CATAATTGAGGCAC-AACCTTAGGCTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAAC
64 CACAATTGAGGCACGAA-CTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAAC
* ** * * * *
517381 CAATGCCTCAATATCGTGTATCCGGATTAGAAGACTAAGTTTGTGGTGCCTAATCCTGAAAAGAA
128 CAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAG
* * * * * * * *
517446 TGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTATGCA-ACAAACTTTGATTCTGTTAAAAA
193 TAGGGATTAGTATGATTATTCATGTTTATCTTATGTAAG-AGACAAACTTTGATTCTATCAAAAA
* * * * * *
517510 T-GACTGAACGAAATACTTTTCTTG-CAGCATCAAATCATCATTGTCATGTATCCTAATGGAAGG
257 TGGA-TGAAAGAAATATTTTTCTTGCCA-CATCAAAGCGTCAATGTCATGTATCCTAATGAAAGG
* * * *
517573 AATTTGATTTTGGTTCCCAATCATGAAAAGAATAGAGACTATTATGAGAATTC-ATGCTTGCCTT
320 AATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTT
* * * * * *
517637 AGTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAAAAAAAGATTTACC-TGCAAAGGA
384 ATTTAAGGGATGAACTTTAATTCTAAGGAAAA-TAGGGCAAAGAAAAGATTT-CCATGCAAAAGA
* * * * * **
517700 AAATCATTAATATCATTTATCCTAAGGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
447 AAATCATTAACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAAT
** ** * * * ** * * *
517765 GAAGATCATTACTAAAATCCATGTTTGCCACAAATT-AGGCATGAAGTTAGACTTTGCAAAGATT
512 GAAGATCATTACTCGAATCCACATTTGTCA-TAATTGAGGCACGACCTTAGGCTTTACAAAAATT
* * * * * * * *
517829 GGTGGGAGGATA-GCCTTAT-TTGCGAAATCAAAGCATCAACATCATGTAGT-CTTATTAGGAGA
576 GGTGGGAAGA-ACGCCTT-TCTTACGAAACCAATGCTTCAATATCGTGTA-TCCTTATTAGAAGA
* * * * *
517891 CTATGTTTATGGTGCCTAATCCTTG-AAAGAATGGGGATTAGTTA-ACTATTCATGTTTGTCTTA
638 CTAAGTTTGTGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTA
* * ** * * *
517954 TTTAAGAGACAATCACTGATTCTATCAAAAAC-AGTTGAAAGAAATGCTTTTCTTGCAACACCAA
702 TTTAAGCGACAAACTTTGATTCTATTAAAAACGA-TTGAAAGAAATACTTTTCTTGCAACATCAA
* * * * * * * ** ** *
518018 AACATCAATGTCATGTATCCTATTGAATGGAATGTGTTTTTCATTCCCAATTGTGAAAGGAATGG
766 ATCGTCATTGTCATGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGG
* * * * * * * * * *
518083 AGACTGTTATGAG-AGTCAATGCTTGCCTTATTTAAGGGATGGACATTCATTCTAAGGAAA-ATA
831 AGACTATTACGAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTA
* * * * * *
518146 GGGCAAACAAAAGATTTCCATGCAAA-AAAAATCATAAATATCATTTATCCTAATAAGG
895 -GGCAAAGAAAAGATTTACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* * ** * * * * * *
518204 AGAATGTGTTTGTAGTGCCTAATCGGAAAATAAATGAAGATCGTTATTACAATCCACGTTTGTAA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * * * *
518269 CAATTAAGGCGCAAACATTAGACTTTACAAAAATTGGTGGAAAGAAACCCTTTCATATGAAACAA
66 CAATTGAGGCACGAAC-TTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCA
* * * * * * * * * *
518334 AAGCATC-ATATCGTGTATCCTTATGAGAAGACCAAGTTTATAGTGCCAAATCCTGAAAATAATG
130 ATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTA
* * * * * * *
518398 GGGATTAATATGACTATTCTTGTTTGTCTTATTTCAGAGACAAACTTTGATTTTATCAAAAATGG
195 GGGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGG
* ** * * *
518463 TTGAAAGAAATGCTTTTCTTGCGACAGCAATGTC-TCAATGTCATGTATCCTAATGAAAGGAATG
260 ATGAAAGAAATATTTTTCTTGCCACATCAAAG-CGTCAATGTCATGTATCCTAATGAAAGGAATG
* *
518527 TGTTTTTGGTTCCCAATCATGACAAGAATAGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
324 TGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
* * * *
518592 AGGGATGAACTTTAATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCATTCAAAAGAAAATCAT
389 AGGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * * * * * * **
518657 CAATATCATTTATCCTAATAAAGAGAATGTGTTTACAGTACCTTATCACAAAATGAATGAAGATC
454 TAACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATC
* * * ** * * * * **
518722 ATTATTAGAACCCATGTTTGTCACAACTGAGGCATGAACTTAGGCTTTTGAAAAATTGGTGGGAA
519 ATTACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAA
* *
518787 GAATGCCTTTCTTACGAAACCAACGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTG
584 GAACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTG
* ** * * ** *
518852 GTGCCAAATCCTGAAAAGAATGCAGATTAGAAAGATTCTTCATTTTTGTCTTATTTAAGAAATAA
649 GTGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAA
* * * * ** *
518917 AATTTGATTCTGTTAAAAACAATTGAAAGAAATATTTTTCTTGCGGCATCAAATCGTCATCGTCA
714 ACTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCA
* ** * *
518982 TGTATCCTAACGAAAATAATATGATTCTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAG
779 TGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAG
519047 AATTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTT-ACGAAAGCTAGGCAAAGAAAAGAT
844 AATTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGAT
519111 TTACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
909 TTACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* * *
519155 AGAATGTGTTTATATTGCATAATCTCAAAATGAATGAAGATCATTACTTGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
519220 CAATTGAGGCACGAACTTAGGCTTTACCAAAGTTGGTGGGAAGAAAGCCTTTCCTACGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
*
519285 TGCTTCAATATCGTGTATCCTTATAAGAAGGCTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
*
519350 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGATAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
* *
519415 TGAAAGAAATATTTTTCTTGCGACATCAAAGTGTCAATGTCATGTATCCTAATGAAAGGAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
519480 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * *
519545 GAATGAACTTTAGTTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
* *
519610 ACACCATTTATCTTAATGAGGAGAATAGGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
* * * *
519675 TACTCGAATCCATATTTGTCATAATTGAGGCATGACCTTAGACTTTACAAAAATTAGTGGGAAGA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
*
519740 ATGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
586 ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
* *
519805 GCCTAATCCTGAAAATAATAGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
651 GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
*
519870 TTTGATTCTGTTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
716 TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
* * * *
519935 TATGCTAATGAAACGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACGAGAA
781 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
*
520000 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTACGCAAAGAAAAGATTT
846 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
*
520065 ACATGCAAAGGAAAATCATCAATATCCTCTATCCTAATGAGG
911 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* *
520107 AGAACGTGTTTATAGTGCATAATCACAAAATGAATGAACATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
520172 CAATTGAGGCACGAACTTAGGCTTTTCAAAAGTTGGTGGGAAGAAAGCCTTTCCTACGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
*
520237 TGCTTCAATATCGTGTATCCTTATAAGAAGGCTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
* *
520302 GGATTAGTATGGTTATTCATGTATATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
520367 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
520432 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
520497 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
520562 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
* *
520627 TACTCGAATCCACATTTGTCATAATTGAGGCATGACCTTAGGCTTTACAAAAATTGGTGGGAAAA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
*
520692 ACGCCATTT-TTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTATGTTTGTGG
586 ACGCC-TTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGG
* *
520756 TGCCTAATCCTAAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCAACAAA
650 TGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAA
** *
520821 CTTTGATTCTATTAAAAAAAATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCAT
715 CTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCAT
* * *
520886 GTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAAACATGAAAAGAGTGGATACTATTACGAGA
780 GTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGA
* *
520951 ATTCAAGCTTGCTTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATT
845 ATTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATT
*
521016 TACATGGAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
910 TACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* * *
521059 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATCACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
521124 CAA-TGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
*
521188 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
521253 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
521318 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
521383 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* *
521448 GGATGAACTTAAATTCTAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
521513 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
* * *
521578 TAGTCGAATCCACATTTGTCATAATTGAGGGACGACCTTAGGCTTTACAAAAATTGGTGGGAAAA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
* *
521643 ATGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTATGTTTGTGGT
586 ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
* *
521708 GCCTAATCCTAAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCAACAAAC
651 GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
* *
521773 TTTGATTCTATTAAAAACAATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATG
716 TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
*
521838 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTACGAGAA
781 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
* * *
521903 TTCAAGCTTGCTTTAGTTAAGGGATGAACTTTGATTTTAACAAAAGCTAGGCAAAGAAAAGATTT
846 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
521968 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
911 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* *
522010 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
522075 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* *
522140 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAA
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
*
522205 GGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
522270 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
522335 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
*
522400 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
522465 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
*
522530 TAATCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
* * * *
522595 ACGCCTTTCTTACGAAACCAATGCTTCAATATGGTGTATCCTTATTAGGAGACTAAGTTCGAGGT
586 ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
* * *
522660 GCTTAATCCTAAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCAACAAAC
651 GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
** *
522725 TTTGATTCTATTAAAAAAAATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATG
716 TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
* *
522790 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAAACATGAAAAGAGTGGAGACTATTACGAGAA
781 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
* *
522855 TTCAAGCTTGCTTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
846 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
*
522920 ACATGGAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
911 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* * *
522962 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATCACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
523027 CAA-TGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
*
523091 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
523156 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
523221 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
523286 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
*
523351 GGATGAACTTAAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
523416 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
* * *
523481 TAGTCGAATCCACATTTGTCATAATTGAGGGACGACCTTAGGCTTTACAAAAATTGGTGGGAAAA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
* *
523546 ATGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTATGTTTGTGGT
586 ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
* * *
523611 GCCTAATCCTAAAAAGAATGGGGATTAGAAAGATTATTCATTTTTGTCTTATTTAAGCAACAAAC
651 GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
* *
523676 TTTGATTCTATTAAAAACAATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATG
716 TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
*
523741 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTACGAGAA
781 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
* * *
523806 TTCAAGCTTGCTTTAGTTAAGGGATGAACTTTGATTTTAACAAAAGCTAGGCAAAGAAAAGATTT
846 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
523871 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
911 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* *
523913 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
523978 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* *
524043 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAA
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
*
524108 GGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
524173 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
524238 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
*
524303 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
524368 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
*
524433 TAATCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
* * * *
524498 ACGCCTTTCTTACGAAACCAATGCTTCAATATGGTGTATCCTTATTAGGAGACTAAGTTCGAGGT
586 ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
* *
524563 GCTTAATCCTAAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
651 GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
* * * * * * *
524628 TTTGGTTTTGTTAAAAACGATAGAAAGAAATACTTTTTTTTCAACATCAAATCATCATTGTCATG
716 TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
*
524693 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTACGAGAA
781 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
* * * *
524758 TTCATGCTT-ACTATAGTTAAGGGATGAACATTGATTTTAATGAAAGCTAGGCAAAGAAAAGAAT
846 TTCATGCTTGCCT-TAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATT
524822 TACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
910 TACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* *
524865 AGAATGTGTTTATTGTGTATAATGC-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
1 AGAATGTGTTTATAGTGCATAAT-CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
524929 ACAATTGAGACTCGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTACGAAACCA
65 ACAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCA
* * *
524994 ATGCTTCAATATCGTGCACCCTTATAAGAAGACTAAGTTTATAGTGCCTAATCCTAAAAAGAGTA
130 ATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTA
* * *
525059 AGGATTAGTACGATTATTCATGTTTATCTTATGTTAGAGACAAACTTTGATTCTATCAAAAATGG
195 GGGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGG
* *
525124 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATTT
260 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
*
525189 GTTTTTGGTTCCCAATCATGAAAAGAATGGATACTGTTATGAGAATCAATGCTTGCCTTATTTAA
325 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
525254 GGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATT
390 GGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATT
* * *
525318 AACATCATTTATCATGATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCA
455 AACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCA
525383 TTACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAG
520 TTACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAG
* * * *
525448 AACGCCTTTCTTATGAAACCAATGCTTCAATATGGTGTATCATTATTAGAAGACTAAGTTCGTGG
585 AACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGG
*
525513 TGCCTAATGCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAA
650 TGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAA
* * *
525578 CTTTGATTCTGTTAAAAACGATAGAAAGAAATACTTTTCTTGCAACATCAAATCATCATTGTCAT
715 CTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCAT
* *
525643 GTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTAAGAGA
780 GTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGA
* *
525708 ATTCTTGCTTGCTTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATT
845 ATTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATT
* *
525773 TACATGCAAAGAAAAATCATCAGTATCCTTTATCCTAATGAGG
910 TACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* *
525816 AGAAT-T-TGT-T-GTGCATAATCACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
*
525877 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
*
525942 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
* *
526007 GGATTAGTACGATTATTCATGTTTATCTTATGTTAGAGACAAACTTTGATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
526072 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
526137 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
*
526202 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
526267 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
456 ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
526332 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
521 TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
* * * *
526397 ACGCCTTTCTTACGAAGCCAATGCTTCAATATGGTGTATCCTTATTAGGAGACTAAGTTCGTGGT
586 ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
**
526462 GCCTAATGTTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
651 GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
* * *
526527 TTTGATTCTGTTAAAAACGATAGAAAGAAATACTTTTCTTGCAACATCAAATCATCATTGTCATG
716 TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
* * *
526592 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTAAGAGAA
781 TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
* * *
526657 TTCTTGCTTGCTTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAATATTT
846 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
*
526722 ACATGCAAAGGAAAATCATCAGTATCCTTTATCCTAATGAGG
911 ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
526764 AGAATTTGTTGTGCATAATCACAAAATGCTTTATCCTAATGAGGAGAATTTGTTGTGCATAATCA
1 AGAA-------TG-------------TG---T-T--T-AT-------A------GTGCATAATCA
* * *
526829 CAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCACAAGTGAGGCTCGAACTTAGGCTTT
26 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGGCTTT
*
526894 ACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAATGCTTCAATATCGTGTACCCTTATA
91 ACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAATGCTTCAATATCGTGTATCCTTATA
* *
526959 AGAAGACTAAGTTTATGGTGCCTAACCCTAAAAAGAGTAGGGATTAGTACGATTATTCATGTTTA
156 AGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAGGGATTAGTATGATTATTCATGTTTA
* *
527024 TCTTATGTAAGAGACAAAATTTAATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACA
221 TCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACA
* *
527089 TCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGA
286 TCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGA
* * *
527154 ATGGAGACTGTTATGAGAATGAATG-TTGCCTTATTTAAGGGATGAGCTTTAATTCTAGGGAAAA
351 ATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTCTAAGGAAAA
* * *
527218 TAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAATCATTAACACCATTTATCCTGATGAGGAGAA
416 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAACACCATTTATCCTAATGAGGAGAA
*
527283 TATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCACATTTGTCAAAAT
481 TATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCACATTTGTCATAAT
* * * **
527348 TTAGGCATGACCTTAGGCTTTGCAAAAATTGGTGGGAAGAACGCCTTTCTTAAAAAACCAATGCT
546 TGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGAACGCCTTTCTTACGAAACCAATGCT
*
527413 TCAATATC--GTATCCTTATTAGAAAACTAAGTTTGTGGTGCCTAATCCTGAAAAGAATGGGGAT
611 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * *
527476 TAGTAAGATTATTCATTTTTGTCTTATTTAAGCAACAAACTTTTATTTTGTTAAAAATGACTGAA
676 TAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAACTTTGATTCTATTAAAAACGATTGAA
* * ** * *
527541 ATAAATACTTTTCTTGCAGCATCAAATCAACATTGTCTTGTATCCTAATGGAAGGAATTTGATTT
741 AGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATGTATCCTAATGAAAGGAATTTGATTT
* *
527606 TGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGACAATTCATGCTTGCCTTAGTTAAGGGAT
806 TGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAATTCATGCTTGCCTTAGTTAAGGGAT
* * *
527671 GAACTTTGATTTTAACGAAAACTAGGCAAAGAAAAGATTTACTTGCAAAGGAAAATCATCCATAT
871 GAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTTACATGCAAAGGAAAATCATCAATAT
527736 CCTTTATCCTAATGAGG
936 CCTTTATCCTAATGAGG
* *
527753 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
527818 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* *
527883 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAACCCTAAAAAGAGTAG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
* * *
527948 GGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAAATTTAATTCTATCAAAAATGGA
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
528013 TGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG
261 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
528078 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTACCTTATTTAAG
326 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * * *
528143 GCATGAAATTTGATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCA
391 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
* * * * * * * ** *
528208 ATA-TAGTTTATCCTAATAAGGAGAATGTGCTTGTAGTGCCTAATCAGAAAATGAATGAAGATCT
456 ACACCA-TTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCA
* ** * * * * * * *
528272 TTA-TTGCAATCCATGTTTGTCACAATTAAGGCACGAACATAGACTTTTCAAAAATTGGTGGAAA
520 TTACTCG-AATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAA
* * * * * * *
528336 GAAAC-CTTTTCTTACGAAACAAAGGCATCAATATCGTGTATCTTTATGAGAAGACTAAGTTTAT
584 G-AACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGT
* * * * * * * * *
528400 AGTGCCAAATCCTGAAAATAATCGAGATTAGTATGACTATTC-TTACTTGTCTTATTTAAGAGAC
648 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATT-TTTGTCTTATTTAAGCGAC
* * * * * * * * * * * * *
528464 AAACTTTAATTTTATCAAAAATGGTCGAAATAATTGCTTTTCTTGCGACAT-GAATGTGTCAATG
712 AAACTTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAAT-CGTCATTG
* * ** * *
528528 CCATGTATCCTAATGGAAGGAACGTGTTTTTGGTTCCCAATTATGAAAAGAATGGAGACTATTAC
776 TCATGTATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTAC
* * * *
528593 TAGAATTCATGCTTCCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAACTAGGCAAAAAAAA
841 GAGAATTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAA
* *
528658 GATTTACATGCAAAGGAAAATCCTAAATATCCTTTATCCTAATGAGG
906 GATTTACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
* *
528705 AGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * *
528770 CAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCTTATGAAGCCAA
66 CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
* * * * * *
528835 TGCTTCAATATCGTGTATCCTTATTAGAAGGCTAAGTTTATGGTGCCTAATCCTGAGAAGAATGG
131 TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
* *
528900 GGATTAGTATGACTATTCATGTTTCTCTTATGTAAGAGA-AAAGCTTTGATTCTATCAAAAATGG
196 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAA-CTTTGATTCTATCAAAAATGG
* ** * * *
528964 ATGAGAGAAATATTTTTCTTGTGACATCAAAGCGTTAATGTCATGTATCCAAATGAAAGGAATTT
260 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* *
529029 GATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTA
325 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTA
529068 CAAGAATTCA
Statistics
Matches: 13332, Mismatches: 1144, Indels: 352
0.90 0.08 0.02
Matches are distributed among these distances:
929 2 0.00
930 44 0.00
931 34 0.00
932 61 0.00
934 5 0.00
935 371 0.03
936 28 0.00
937 149 0.01
938 70 0.01
939 1 0.00
946 6 0.00
947 515 0.04
948 624 0.05
949 438 0.03
950 937 0.07
951 3831 0.29
952 4642 0.35
953 537 0.04
954 88 0.01
955 47 0.00
962 2 0.00
963 1 0.00
965 1 0.00
966 1 0.00
969 3 0.00
973 1 0.00
976 1 0.00
978 1 0.00
982 2 0.00
989 310 0.02
991 228 0.02
992 351 0.03
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (952 bp):
AGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
CAATTGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
TGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
ACACCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCAT
TACTCGAATCCACATTTGTCATAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGA
ACGCCTTTCTTACGAAACCAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGT
GCCTAATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAAC
TTTGATTCTATTAAAAACGATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATG
TATCCTAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAA
TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTT
ACATGCAAAGGAAAATCATCAATATCCTTTATCCTAATGAGG
Found at i:526799 original size:44 final size:44
Alignment explanation
Indices: 526748--526835 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
526738 CATCAGTATC
526748 CTTTATCCTAATGAGGAGAATTTGTTGTGCATAATCACAAAATG
1 CTTTATCCTAATGAGGAGAATTTGTTGTGCATAATCACAAAATG
526792 CTTTATCCTAATGAGGAGAATTTGTTGTGCATAATCACAAAATG
1 CTTTATCCTAATGAGGAGAATTTGTTGTGCATAATCACAAAATG
526836 AATGAAGATC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (44 bp):
CTTTATCCTAATGAGGAGAATTTGTTGTGCATAATCACAAAATG
Found at i:528180 original size:476 final size:474
Alignment explanation
Indices: 513464--529067 Score: 17271
Period size: 476 Copynumber: 32.8 Consensus size: 474
513454 CCTAACAAGA
* * *
513464 AGAATGTGTTTATAGTGCCTAATCACAAAATTAACGAAGATCATTACTAGAATCCATGTTTATCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * ** * *
513529 CAATTGAGG-TACGAAGTTAGACTTTACAAAAATTGGTAGGAGGAAAGCCTCACTTGCGAAATCA
65 CAATTGAGGCT-CGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * * * * * * * * **
513593 AAGCATCAACATCATGCAGT--TTTTTGAGAAGACTATGTTTATGGTGTCAAATCCTTGAAAGAA
129 ATGCTTCAATATCGTGTA-TCCTTATT-AGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * * *
513656 TGGGGATTAGGATGACTATTCATATTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAAC
192 TGGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * * ** * * * * * *
513721 AGTTGAAAAAAATGCTTTTCGTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAATGGAAT
257 GGATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* ** * * *
513786 ATGTTTTTGGTTCCCAATCATGGTAGGAATGGAGACTGTTATGAGAATCAATGCCTGCCTTATCT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
* * *
513851 AAGGGATGAACTTTGATTTTAAGGGAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCA
387 AAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCA
* **
513916 TCAATATCATTTATCCTAACAAGG
451 TCAATATCCTTTATCCTAATGAGG
* * ** * *
513940 AGAATGTGCTTGTAAAGCCTAATCAGAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCA-CAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * *
514005 CAAATGAGGCACGAACATAGACTTTACAAAAATTGGTGGAAAGAAACCCTTTTCTTACGAAACAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTACGAAACCA
* * * * ** * ** * * * *
514070 AAGCATCAATATCATGTATCTTTATGGGAAGACTAAGTTTATAGCACCAAATCCTGAAAATAATC
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
** ** * *
514135 AAGATTAGTATCACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
* ** * * *
514200 TTGAAAGAAATGCTTTTCTT-CCGACAACAATGTGTCAATGTCATGTATCCTAATGAAAGGAATG
259 ATGAAAGAAATATTTTTCTTGCC-ACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* * * * *
514264 TGTTTTTCGTTCCCAATCATGAAAAAAATAGAGACTGTTACT-AGAATCAATGTTTACCTTATTT
323 TGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTA-TGAGAATCAATGCTTGCCTTATTT
* * * * * * *
514328 AAGGGATGGACTTT-AATTT-AGTGAAAATAAGGTAAAGAAAAAATTTCCATTCAAAAGAAAGTC
387 AAGGGATGAACTTTGATTTTAAG-GAAAAT-AGGCAAAGAAAAGATTTACATGCAAAAGAAAATC
* * *
514391 ATCAATATCATTTATCCTGAA-AAGA
450 ATCAATATCCTTTATCCT-AATGAGG
* *
514416 AGAATGTATTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCA-CAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * *
514481 CAAATGAGGCACGAACTTAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAATCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * * * * * *
514546 AGCATCAATATCGTGTATCGTTATGAGAAGACTAAGTTTACGGTGCCAAATCTTGAAAAGAATGG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * * *
514611 GGATAAGTATTGA-TATTCAAGTTTGTCTTATATAAGAGGCAAACTTTGATTCTATCAAAAA-GT
195 GGATTAGTA-AGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG-
* ** * ** * * *
514674 GTTGAAAGAAAT-GCTTTCTTGCGACCCCAAAACGTCAATGCCATGTATCCTAATGAAAGAAATG
258 GATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* ** * * * * **
514738 TGTTTTTGGTTCCTAGCCATTAAAATAGTGGAGACTATTATGAGAATTTATGCTTGCCTTATTTA
323 TGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
* * * * * *
514803 AGGGATGGACTTTAATTTTAAAGAAAATAAGGCAAGGAAACAG-TTTACATGCTAAAGAAAATTA
388 AGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAGAAA-AGATTTACATGCAAAAGAAAATCA
*
514867 TCAATATCTTTTATCCTAAT-AGGG
451 TCAATATCCTTTATCCTAATGA-GG
* *
514891 AGAATATGTTTATAGTGCCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * ** * * *
514956 CTATTAAGGCACAAAGTTAGACTTTACAAAAATTGGTCAGAGGAAAGCCTTACTTACAAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * * * * * * **
515021 AGCATCAACAACATATAGT-CTTATAAGAAGACTATGTTTATGGTGCCTAATCCTTGAAAGAATG
130 TGCTTCAATATCGTGTA-TCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * * * *
515085 GGGATTAGTAGGACTATTCAAGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
* * * * ** * * * *
515150 TTGAAAGAAATA-CTTTCTTGCGACACCAGTGCATCAATGTCGTGTATGCTAATGAAAGGAGTGT
259 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* * * * * *
515214 GTTTTTGGTTTCAAATCATGAAAAG-A-GTAGACTATTATGAGACTCAATGCTTGTCTTATTTAA
324 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* * * * * * *
515277 GGGATGAACTTTAATTTTTAGTAAAAAAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCACC
389 GGGATGAACTTTGATTTTAAG-GAAAATAGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATC
* * * * * *
515342 AATGTCATTTTTCCTACTAAAG
453 AATATCCTTTATCCTAATGAGG
* * * * * * * * *
515364 AGAATGTGTTTAAAGTACCTAGTCAGAAAATGAGTGAAGGTCAGTACTAGAATCCATGCTTATC-
1 AGAATGTGTTTATAGTGCCTAATCA-CAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * *
515428 CAGTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAACTTTTCTTACGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * * * *
515493 AGCATT-AATATCGTGTAT-C-----------C----TTTATGGTGCATAAAT-TTGAAAGGGAT
130 TGC-TTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCT-AATCCTAAAAAGAAT
** * ** * *
515540 AAGGATTAG-ATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATAAAAAAAT
193 GGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAAT
** * * * ** * *
515604 GGATGAAAGAAATGCTTTTCTTGCGAC-CCTAAAGTGTCAATACCATGTATCCTATTGAATGGAA
257 GGATGAAAGAAATATTTTTCTTGCCACATC-AAAGCGTCAATGTCATGTATCCTAATGAAAGGAA
* * * * ** *
515668 TGTGTTTTTGGTTCCCAATAATGAAAAAAAAAAAGGAGATTGTTCGGGGAATCAATGCTTGCCTT
321 TGTGTTTTTGGTTCCCAATCATG---AAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTT
* * * * * * *
515733 ATCTAAAGGATCAACTTTGACTTTAAGGAAAATAGGGCAAGGAAAATATTT-CAATTCAAAAGAA
383 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTAC-ATGCAAAAGAA
*
515797 AATCATCAATATCATTTATCCTAATGAGG
446 AATCATCAATATCCTTTATCCTAATGAGG
* * *
515826 AGAATGTATTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATCCATGTTTGCCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * *
515891 TAATTGAGGCAT-GAACTTAGGCTTTACAAAAATTGGTGGGAAGAGAGCCATTCTTACGAAACCA
65 CAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * * * *
515955 ATGCTTCAACATCGTGCATCCTTATTAGAAGACTAAGTTTATGGTGCTTAATCCTGAAAAGTATG
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * * * *
516020 GGGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAATTTTGGTTCTATCAAAAATGG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
* * *
516085 TTGAAAGAAATATTTTTCTTGCGACACCAAAGCGTCAATG-CATGTATCCTAATGAAAGGAATGT
259 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* **
516149 GTTTTTGGTTCCCAATCACGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTATCTTATTTAA
324 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* * * * * * *
516214 AGGATGAACTTTAATTTTGAGGAAAATAGGGCAAAGAAAAGATTTCCATACAAAAGAAAATCTTA
389 GGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATC
* *
516279 AATA-CCATTTATCTTAATAAGG
453 AATATCC-TTTATCCTAATGAGG
* ** * ** *
516301 GGAACATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTAGAATCCACATTTGCCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * *
516366 TAATTGAGTCAT-GAACATAGGCTTTATAAAAATTGGTGGGAAGAACGCCTTTCTTACGAAACCA
65 CAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * * * * *
516430 ATGCTTCAATGTCGTGTATCCTAATTAGAAGACTAAGTTTGTGGTGCCTAGTCCTAAAAAAAATA
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * * * *
516495 GGGATTAGTAAGATTATTCATTTTTCTCTTATTTAAGAGACAAACTTTGATTCTGTTAAAAA-CG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
* * * * * * *
516559 ATTGAAAGAAATACTTTTCTTGCGACATCAAATCGTCATTGTCGTATATCCTAATGAAAGGAATA
259 A-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
** * * * * * * * * * *
516624 TAATTCTAGTTCCCAGTCTTGAAAATAATGGAGGCTGTTACGAGAATTC-TTACTTGCCTTAGTT
323 TGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATTT
* * * *
516688 AAGGGATGAACTTTGATTTTAAACGAAAACTAGGAAAAGAAAAGTTTTACATGCAAAGGAAAATC
387 AAGGGATGAACTTTGATTTT-AAGGAAAA-TAGGCAAAGAAAAGATTTACATGCAAAAGAAAATC
* * *
516753 ATCAATATCATTTAACCTAATGAGA
450 ATCAATATCCTTTATCCTAATGAGG
*
516778 AGAATGTGTTTATAGTGCCTAATCACAAAATGGATGAAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * *
516843 CAATTAAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCATTCTTACGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
*
516908 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * *
516973 GGATTATTATGATTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGT
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
* * * * * * * *
517038 TGAAAGAAATATTTTTCTTTCGACACCAAAGCATTAATGCCATGTATCCAAATGAAAGGAATATG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
* * *
517103 TTTTTGGTTCTCAATCATGAAAAGAATGGAGACTGTTATGATAATCAATGCTTGCTTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
517168 GGATGAACTTTAATTTTAAGGAAAATATTGCAAAGAAAATATTT-CTATGCAAAAAAAAATCATC
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTAC-ATGCAAAAGAAAATCATC
*
517232 AATA-CCATTTATCCTAATAAGG
453 AATATCC-TTTATCCTAATGAGG
* * **
517254 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGA-CGATTAC-AGGAATCCACATTTGT
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATC-ATTACTA-GAATCCATGTTTGT
* * * *
517317 CATAATTGAGGCAC-AACCTTAGGCTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAAC
63 CACAATTGAGGCTCGAA-CTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* ** * *
517381 CAATGCCTCAATATCGTGTATCCGGATTAGAAGACTAAGTTTGTGGTGCCTAATCCTGAAAAGAA
127 CAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAA
* * * *
517446 TGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTATGCA-ACAAACTTTGATTCTGTTAAAAA
192 TGGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAA
* * * * * *
517510 T-GACTGAACGAAATACTTTTCTTG-CAGCATCAAATCATCATTGTCATGTATCCTAATGGAAGG
256 TGGA-TGAAAGAAATATTTTTCTTGCCA-CATCAAAGCGTCAATGTCATGTATCCTAATGAAAGG
* * * *
517573 AATTTGATTTTGGTTCCCAATCATGAAAAGAATAGAGACTATTATGAGAATTC-ATGCTTGCCTT
319 AATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTT
* * * * *
517637 AGTTAAGGGATGAACTTTGATTTTAACGAAAACTAGGCAAAAAAAAGATTTACCTGCAAAGGAAA
383 ATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGCAAAGAAAAGATTTACATGCAAAAGAAA
* * * *
517702 ATCATTAATATCATTTATCCTAAGGAGA
447 ATCATCAATATCCTTTATCCTAATGAGG
* *
517730 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGCCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * * * *
517795 CAAATT-AGGCAT-GAAGTTAGACTTTGCAAAGATTGGTGGGAGGATAGCCTTAT-TTGCGAAAT
65 C-AATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTT-TCTTACGAAAC
* * * * * * **
517857 CAAAGCATCAACATCATGTAGT-CTTATTAGGAGACTATGTTTATGGTGCCTAATCCTTGAAAGA
127 CAATGCTTCAATATCGTGTA-TCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGA
* * * **
517921 ATGGGGATTAGTTA-ACTATTCATGTTTGTCTTATTTAAGAGACAATCACTGATTCTATCAAAAA
191 ATGGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
** * ** * * * * * *
517985 CAGTTGAAAGAAATGCTTTTCTTGCAACACCAAAACATCAATGTCATGTATCCTATTGAATGGAA
256 TGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAA
** ** * *
518050 TGTGTTTTTCATTCCCAATTGTGAAAGGAATGGAGACTGTTATGAGAGTCAATGCTTGCCTTATT
321 TGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATT
* * * * * *
518115 TAAGGGATGGACATTCATTCTAAGGAAAATAGGGCAAACAAAAGATTTCCATGCAAAA-AAAATC
386 TAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATC
* * *
518179 ATAAATATCATTTATCCTAATAAGG
450 ATCAATATCCTTTATCCTAATGAGG
* * * * * * *
518204 AGAATGTGTTTGTAGTGCCTAATCGGA-AAATAAATGAAGATCGTTATTACAATCCACGTTTGTA
1 AGAATGTGTTTATAGTGCCTAATC--ACAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * * * * * *
518268 ACAATTAAGGCGCAAACATTAGACTTTACAAAAATTGGTGGAAAGAAACCCTTTCATATGAAACA
64 ACAATTGAGGCTCGAAC-TTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * * * * * * *
518333 AAAGCATC-ATATCGTGTATCCTTATGAGAAGACCAAGTTTATAGTGCCAAATCCTGAAAATAAT
128 AATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * *
518397 GGGGATTAATATGACTATTCTTGTTTGTCTTATTTCAGAGACAAACTTTGATTTTATCAAAAATG
193 GGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
* ** * * *
518462 GTTGAAAGAAATGCTTTTCTTGCGACAGCAATGTC-TCAATGTCATGTATCCTAATGAAAGGAAT
258 GATGAAAGAAATATTTTTCTTGCCACATCAAAG-CGTCAATGTCATGTATCCTAATGAAAGGAAT
* *
518526 GTGTTTTTGGTTCCCAATCATGACAAGAATAGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
* * * *
518591 AAGGGATGAACTTTAATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCATTCAAAAGAAAATCA
387 AAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAGATTTACATGCAAAAGAAAATCA
* * *
518656 TCAATATCATTTATCCTAATAAAG
451 TCAATATCCTTTATCCTAATGAGG
* * * * *
518680 AGAATGTGTTTACAGTACCTTATCACAAAATGAATGAAGATCATTATTAGAACCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* ** *
518745 CAACTGAGGCAT-GAACTTAGGCTTTTGAAAAATTGGTGGGAAGAATGCCTTTCTTACGAAACCA
65 CAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * * *
518809 ACGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGTGCCAAATCCTGAAAAGAATG
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
** * * * * * * * * **
518874 CAGATTAGAAAGATTCTTCATTTTTGTCTTATTTAAGAAATAAAATTTGATTCTGTTAAAAA-CA
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
** * * **
518938 ATTGAAAGAAATATTTTTCTTGCGGCATCAAATCGTC-ATCGTCATGTATCCTAACGAAAATAAT
259 A-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAAT-GTCATGTATCCTAATGAAAGGAAT
* * * * * *
519002 ATGATTCTGGTTCCCAATCATGAAAAGAATGGAGACTATTACGAGAATTC-ATGCTTGCCTTAGT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATT
* * *
519066 TAAGGGATGAACTTTGATTTT-ACGAAAGCTAGGCAAAGAAAAGATTTACATGCAAAGGAAAATC
386 TAAGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAGAAAATC
519130 ATCAATATCCTTTATCCTAATGAGG
450 ATCAATATCCTTTATCCTAATGAGG
* * * *
519155 AGAATGTGTTTATATTGCATAATCTCAAAATGAATGAAGATCATTACTTGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
519220 CAATTGAGGCACGAACTTAGGCTTTACCAAAGTTGGTGGGAAGAAAGCCTTTCCTACGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
519285 TGCTTCAATATCGTGTATCCTTATAAGAAGGCTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * *
519350 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGATAAACTTTGATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
* *
519415 TGAAAGAAATATTTTTCTTGCGACATCAAAGTGTCAATGTCATGTATCCTAATGAAAGGAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
519480 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
519545 GAATGAACTTT-AGTTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATT
390 GGATGAACTTTGA-TTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATC
* *
519609 AACA-CCATTTATCTTAATGAGG
453 AATATCC-TTTATCCTAATGAGG
* * *
519631 AGAATAG-GTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCATATTTGTC
1 AGAAT-GTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * *
519695 ATAATTGAGGCAT-GACCTTAGACTTTACAAAAATTAGTGGGAAGAATGCCTTTCTTACGAAACC
64 ACAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * *
519759 AATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTGTGGTGCCTAATCCTGAAAATAAT
128 AATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * *
519824 AGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAACTTTGATTCTGTTAAAAA-C
193 GGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
* * * * * *
519888 GATTGAAAGAAATACTTTTCTTGCAACATCAAATCGTCATTGTCATGTATGCTAATGAAACGAAT
258 GA-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* * * * *
519953 TTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACGAGAATTC-ATGCTTGCCTTAGT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATT
* * * *
520017 TAAGGGATGAACTTTGATTTTAACGAAAGCTACGCAAAGAAAAGATTTACATGCAAAGGAAAATC
386 TAAGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAGAAAATC
*
520082 ATCAATATCCTCTATCCTAATGAGG
450 ATCAATATCCTTTATCCTAATGAGG
* * *
520107 AGAACGTGTTTATAGTGCATAATCACAAAATGAATGAACATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
520172 CAATTGAGGCACGAACTTAGGCTTTTCAAAAGTTGGTGGGAAGAAAGCCTTTCCTACGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
520237 TGCTTCAATATCGTGTATCCTTATAAGAAGGCTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * * *
520302 GGATTAGTATGGTTATTCATGTATATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
520367 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
520432 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
520497 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCA
*
520562 ACA-CCATTTATCCTAATGAGG
454 ATATCC-TTTATCCTAATGAGG
* * * **
520583 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* *
520648 TAATTGAGGCAT-GACCTTAGGCTTTACAAAAATTGGTGGGAA-AAACGCCATTT-TTACGAAAC
65 CAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAA-GCC-TTTCTTACGAAAC
* *
520710 CAATGCTTCAATATCGTGTATCCTTATTAGAAGACTATGTTTGTGGTGCCTAATCCTAAAAAGAA
127 CAATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAA
* *
520775 TGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCA-ACAAACTTTGATTCTATTAAAAA
192 TGGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAA
** * * * * *
520839 -AAATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATGTATCCTAATGAAAGGA
256 TGGA-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGA
* * * * * * * *
520903 ATTTGATTTTGGTTCCCAAACATGAAAAGAGTGGATACTATTACGAGAATTCAA-GCTTGCTTTA
320 ATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTA
* * * * *
520967 GTTAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTTACATGGAAAGGAAAA
384 TTTAAGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAGAAAA
521032 TCATCAATATCCTTTATCCTAATGAGG
448 TCATCAATATCCTTTATCCTAATGAGG
* * *
521059 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATCACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
521124 CAA-TGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
521188 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * *
521253 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
521318 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
521383 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
** * * * *
521448 GGATGAACTTAAATTCTAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATTA
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCA
*
521513 ACA-CCATTTATCCTAATGAGG
454 ATATCC-TTTATCCTAATGAGG
* * * * **
521534 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTAGTCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* ** *
521599 TAATTGAGGGACGACCTTAGGCTTTACAAAAATTGGTGGGAA-AAATGCCTTTCTTACGAAACCA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTACGAAACCA
* *
521663 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTATGTTTGTGGTGCCTAATCCTAAAAAGAATG
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * *
521728 GGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCA-ACAAACTTTGATTCTATTAAAAA-C
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAATG
* * * * * *
521791 AATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATGTATCCTAATGAAAGGAAT
258 GA-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* * * * * * *
521856 TTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTACGAGAATTCAA-GCTTGCTTTAGT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATT
* *
521920 TAAGGGATGAACTTTGATTTTAA-CAAAAGCTAGGCAAAGAAAAGATTTACATGCAAAGGAAAAT
386 TAAGGGATGAACTTTGATTTTAAGGAAAA--TAGGCAAAGAAAAGATTTACATGCAAAAGAAAAT
521984 CATCAATATCCTTTATCCTAATGAGG
449 CATCAATATCCTTTATCCTAATGAGG
* *
522010 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
522075 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * **
522140 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAA
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * *
522205 GGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
522270 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
522335 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
522400 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCA
*
522465 ACA-CCATTTATCCTAATGAGG
454 ATATCC-TTTATCCTAATGAGG
* * * * **
522486 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTAATCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
522551 TAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGAACGCCTTTCTTACGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
522616 TGCTTCAATATGGTGTATCCTTATTAGGAGACTAAGTTCGA-GGTGCTTAATCCTAAAAAGAATG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTT-TATGGTGCCTAATCCTAAAAAGAATG
* * *
522680 GGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCA-ACAAACTTTGATTCTATTAAAAA-A
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAATG
* * * * * *
522743 AATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATGTATCCTAATGAAAGGAAT
258 GA-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* * * * * * * *
522808 TTGATTTTGGTTCCCAAACATGAAAAGAGTGGAGACTATTACGAGAATTCAA-GCTTGCTTTAGT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATT
* * * *
522872 TAAGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTTACATGGAAAGGAAAATC
386 TAAGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAGAAAATC
522937 ATCAATATCCTTTATCCTAATGAGG
450 ATCAATATCCTTTATCCTAATGAGG
* * *
522962 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATCACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
523027 CAA-TGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
523091 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * *
523156 GGATTAGTATGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
523221 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
523286 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
** * * *
523351 GGATGAACTTAAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTA
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCA
*
523416 ACA-CCATTTATCCTAATGAGG
454 ATATCC-TTTATCCTAATGAGG
* * * * **
523437 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTAGTCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* ** *
523502 TAATTGAGGGACGACCTTAGGCTTTACAAAAATTGGTGGGAA-AAATGCCTTTCTTACGAAACCA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTACGAAACCA
* *
523566 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTATGTTTGTGGTGCCTAATCCTAAAAAGAATG
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * * *
523631 GGGATTAGAAAGATTATTCATTTTTGTCTTATTTAAGCA-ACAAACTTTGATTCTATTAAAAA-C
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAATG
* * * * * *
523694 AATTGAAAGAAATACTTGTCTTGCAACATCAAATCGTCATTGTCATGTATCCTAATGAAAGGAAT
258 GA-TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* * * * * * *
523759 TTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTACGAGAATTCAA-GCTTGCTTTAGT
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATT
* *
523823 TAAGGGATGAACTTTGATTTTAA-CAAAAGCTAGGCAAAGAAAAGATTTACATGCAAAGGAAAAT
386 TAAGGGATGAACTTTGATTTTAAGGAAAA--TAGGCAAAGAAAAGATTTACATGCAAAAGAAAAT
523887 CATCAATATCCTTTATCCTAATGAGG
449 CATCAATATCCTTTATCCTAATGAGG
* *
523913 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
523978 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * **
524043 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAA
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * *
524108 GGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
524173 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
524238 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
524303 GGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCA
*
524368 ACA-CCATTTATCCTAATGAGG
454 ATATCC-TTTATCCTAATGAGG
* * * * **
524389 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTAATCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
524454 TAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGAACGCCTTTCTTACGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
524519 TGCTTCAATATGGTGTATCCTTATTAGGAGACTAAGTTCGA-GGTGCTTAATCCTAAAAAGAATG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTT-TATGGTGCCTAATCCTAAAAAGAATG
* * * * * * *
524583 GGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAACTTTGGTTTTGTTAAAAA-CG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGG
* * * * *
524647 ATAGAAAGAAATACTTTTT-TTTCAACATCAAATCATCATTGTCATGTATCCTAATGAAAGGAAT
259 AT-GAAAGAAATA-TTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* * * * * * *
524711 TTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTACGAGAATTC-ATGCTT-ACTATAG
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCT-TAT
* * * * *
524774 TTAAGGGATGAACATTGATTTTAATGAAAGCTAGGCAAAGAAAAGAATTACATGCAAAGGAAAAT
385 TTAAGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAGAAAAT
524839 CATCAATATCCTTTATCCTAATGAGG
449 CATCAATATCCTTTATCCTAATGAGG
* **
524865 AGAATGTGTTTATTGTGTATAATGC-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
1 AGAATGTGTTTATAGTGCCTAAT-CAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
524929 ACAATTGAGACTCGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTACGAAACCA
64 ACAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * * * * *
524994 ATGCTTCAATATCGTGCACCCTTATAAGAAGACTAAGTTTATAGTGCCTAATCCTAAAAAGAGTA
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * *
525059 AGGATTAGTACGATTATTCATGTTTATCTTATGTT-AGAGACAAACTTTGATTCTATCAAAAATG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTAT-TTAAGAGACAAACTTTGATTCTATCAAAAATG
* *
525123 GATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATT
258 GATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
*
525188 TGTTTTTGGTTCCCAATCATGAAAAGAATGGATACTGTTATGAGAATCAATGCTTGCCTTATTTA
323 TGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
* *
525253 AGGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCAT
388 AGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCAT
* * * * *
525317 TAACATCATTTATCATGATGAGG
452 CAATATCCTTTATCCTAATGAGG
* * * **
525340 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * *
525405 TAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGAACGCCTTTCTTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * ** * *
525470 TGCTTCAATATGGTGTATCATTATTAGAAGACTAAGTTCGTGGTGCCTAATGCTGAAAAGAATGG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * * *
525535 GGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAACTTTGATTCTGTTAAAAA-CGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
* * * * * *
525599 TAGAAAGAAATACTTTTCTTGCAACATCAAATCATCATTGTCATGTATCCTAATGAAAGGAATTT
260 T-GAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* * * * * * *
525664 GATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTATTAAGAGAATTC-TTGCTTGCTTTAGTTA
324 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATTTA
* *
525728 AGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAAGATTTACATGC-AAAGAAAAATCA
388 AGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAG-AAAATCA
*
525792 TCAGTATCCTTTATCCTAATGAGG
451 TCAATATCCTTTATCCTAATGAGG
* * *
525816 AGAAT-T-TGT-T-GTGCATAATCACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * *
525877 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCCTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
525942 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAGTAG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* *
526007 GGATTAGTACGATTATTCATGTTTATCTTATGTT-AGAGACAAACTTTGATTCTATCAAAAATGG
195 GGATTAGTAAGATTATTCATGTTTGTCTTAT-TTAAGAGACAAACTTTGATTCTATCAAAAATGG
*
526071 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGCAATGT
259 ATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
*
526136 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAA
324 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* * * *
526201 GGGATGAACTTTAATTCTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATT
389 GGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATC
*
526266 AACA-CCATTTATCCTAATGAGG
453 AATATCC-TTTATCCTAATGAGG
* * * **
526288 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * *
526353 TAATTGAGGCACGACCTTAGGCTTTACAAAAATTGGTGGGAAGAACGCCTTTCTTACGAAGCCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * ** ** *
526418 TGCTTCAATATGGTGTATCCTTATTAGGAGACTAAGTTCGTGGTGCCTAATGTTGAAAAGAATGG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * * *
526483 GGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCGACAAACTTTGATTCTGTTAAAAA-CGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
* * * * * *
526547 TAGAAAGAAATACTTTTCTTGCAACATCAAATCATCATTGTCATGTATCCTAATGAAAGGAATTT
260 T-GAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* * * * * *
526612 GATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTAAGAGAATTC-TTGCTTGCTTTAGTTA
324 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATTTA
* * * *
526676 AGGGATGAACTTTGATTTTAACGAAAGCTAGGCAAAGAAAATATTTACATGCAAAGGAAAATCAT
388 AGGGATGAACTTTGATTTTAAGGAAA-ATAGGCAAAGAAAAGATTTACATGCAAAAGAAAATCAT
*
526741 CAGTATCCTTTATCCTAATGAGG
452 CAATATCCTTTATCCTAATGAGG
* * ** * *** * * ** *
526764 AGAAT-T-TGT-T-GTGCATAATCACAAAATGCTTTATCCTAATGAGGAGAAT--TTG-TTGTGC
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGT-C
* ** *** * * * * * * * * ** * *****
526822 ATAATCACAAAAT-GAA-TGAAGATCATTGCTAGAATCCATGTTTGTCA-CAAGTGAGGC-T-CG
64 ACAAT-TGAGGCTCGAACT-TAG-GCTTTACAAAAAT---TGGTGGGAAGAAAGCCTTTCTTACG
** * * * * * *
526882 -AACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTT-TCCTATGAA-ACCAATGCTTCAATA
123 AAACCAATGC-TT-CAATA--TCGT-----G-TATCCTTAT--TA-GAAGACTAA-G-TT---TA
* * *** * ** * * * ** * * *
526944 TCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAACCCTAAAAAGAGT-AGGGATTAGTA
170 T-G-GT-GCCTAATCCTAA-A--AAG--AATGG-GGATTA--GTAAGATTATTCA-TG-TTTGT-
* * *** * *** * * ** *
527008 CGATTA-TTCA-TGTTTATCTTATG-TAAGAGACAAAATTTAATTCTATCAAAAATGGATGAAAG
221 C--TTATTTAAGAGACAAACTT-TGATTCTA-TCAAAAATGGA-T-G--------------AAAG
* *
527070 AAATATTTTTCTTGCCACATCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATGTGTTTTTG
266 AAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTG
*
527135 GTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATGAATG-TTGCCTTATTTAAGGGATGA
331 GTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGA
* * * * * * * * *
527199 GCTTTAATTCTAGGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAATCATTAACA-CC
396 ACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAATATCC
*
527263 ATTTATCCTGATGAGG
460 -TTTATCCTAATGAGG
* * * **
527279 AGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACTCGAATCCACATTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCACAA-ATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * * * **
527344 AAATTTAGGCAT-GACCTTAGGCTTTGCAAAAATTGGTGGGAAGAACGCCTTTCTTAAAAAACCA
65 CAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * *
527408 ATGCTTCAATATC--GTATCCTTATTAGAAAACTAAGTTTGTGGTGCCTAATCCTGAAAAGAATG
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * * * *
527471 GGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCA-ACAAACTTTTATTTTGTTAAAAAT-
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAATG
* * * ** * * *
527534 GACTGAAATAAATACTTTTCTTG-CAGCATCAAATCAACATTGTCTTGTATCCTAATGGAAGGAA
258 GA-TGAAAGAAATATTTTTCTTGCCA-CATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAA
* * * * *
527598 TTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGACAATTC-ATGCTTGCCTTAG
321 TGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTAT
* * *
527662 TTAAGGGATGAACTTTGATTTTAACGAAAACTAGGCAAAGAAAAGATTTACTTGCAAAGGAAAAT
385 TTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGCAAAGAAAAGATTTACATGCAAAAGAAAAT
*
527727 CATCCATATCCTTTATCCTAATGAGG
449 CATCAATATCCTTTATCCTAATGAGG
* *
527753 AGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
527818 CAATTGAGGCTCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCCTATGAAACCAA
65 CAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * * *
527883 TGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCTAACCCTAAAAAGAGTAG
130 TGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * * *
527948 GGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAAATTTAATTCTATCAAAAATGGA
195 GGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
*
528013 TGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG
260 TGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTG
*
528078 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTACCTTATTTAAG
325 TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * * *
528143 GCATGAAATTTGATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCA
390 GGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCA
** *
528208 ATATAGTTTATCCTAATAAGG
454 ATATCCTTTATCCTAATGAGG
* * * * *
528229 AGAATGTGCTTGTAGTGCCTAATCAGAAAATGAATGAAGATCTTTA-TTGCAATCCATGTTTGTC
1 AGAATGTGTTTATAGTGCCTAATCA-CAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTC
* * * * * * *
528293 ACAATTAAGGCACGAACATAGACTTTTCAAAAATTGGTGGAAAGAAA-CCTTTTCTTACGAAACA
64 ACAATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTACGAAACC
* * * * * * * *
528357 AAGGCATCAATATCGTGTATCTTTATGAGAAGACTAAGTTTATAGTGCCAAATCCTGAAAATAAT
128 AATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * ** * *
528422 CGAGATTAGTATGACTATTCTTACTTGTCTTATTTAAGAGACAAACTTTAATTTTATCAAAAATG
193 GGGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
* * ** * * * * * * *
528487 G-TCGAAATAATTGCTTTTCTTGCGACATGAATGTGTCAATGCCATGTATCCTAATGGAAGGAAC
258 GAT-GAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAAT
* * * *
528551 GTGTTTTTGGTTCCCAATTATGAAAAGAATGGAGACTATTACT-AGAATTC-ATGCTTCCCTTAG
322 GTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTA-TGAGAA-TCAATGCTTGCCTTAT
* * *
528614 TTAAGGGATGAACTTTGATTTTAACGAAAACTAGGCAAAAAAAAGATTTACATGCAAAGGAAAAT
385 TTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGCAAAGAAAAGATTTACATGCAAAAGAAAAT
* *
528679 CCTAAATATCCTTTATCCTAATGAGG
449 CATCAATATCCTTTATCCTAATGAGG
*
528705 AGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
1 AGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * *
528770 CAATTGAGGCAT-GAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCCTTTCTTATGAAGCCA
65 CAATTGAGGC-TCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * *
528834 ATGCTTCAATATCGTGTATCCTTATTAGAAGGCTAAGTTTATGGTGCCTAATCCTGAGAAGAATG
129 ATGCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATG
* * * *
528899 GGGATTAGTATGACTATTCATGTTTCTCTTATGTAAGAGA-AAAGCTTTGATTCTATCAAAAATG
194 GGGATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAA-CTTTGATTCTATCAAAAATG
* ** * * *
528963 GATGAGAGAAATATTTTTCTTGTGACATCAAAGCGTTAATGTCATGTATCCAAATGAAAGGAATT
258 GATGAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* *
529028 TGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTA
323 TGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTA
529068 CAAGAATTCA
Statistics
Matches: 12708, Mismatches: 2055, Indels: 730
0.82 0.13 0.05
Matches are distributed among these distances:
455 42 0.00
456 43 0.00
457 57 0.00
460 5 0.00
461 7 0.00
462 144 0.01
463 66 0.01
464 1 0.00
469 5 0.00
470 15 0.00
471 21 0.00
472 486 0.04
473 268 0.02
474 518 0.04
475 3031 0.24
476 6671 0.52
477 761 0.06
478 53 0.00
479 68 0.01
480 47 0.00
481 6 0.00
482 3 0.00
483 2 0.00
486 1 0.00
487 1 0.00
488 7 0.00
489 15 0.00
490 7 0.00
491 4 0.00
492 9 0.00
493 1 0.00
494 7 0.00
495 7 0.00
496 1 0.00
497 9 0.00
498 4 0.00
499 8 0.00
500 15 0.00
501 6 0.00
502 2 0.00
503 2 0.00
506 2 0.00
507 4 0.00
508 6 0.00
509 5 0.00
510 2 0.00
514 4 0.00
515 83 0.01
516 101 0.01
517 8 0.00
518 6 0.00
519 28 0.00
520 12 0.00
521 16 0.00
522 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AGAATGTGTTTATAGTGCCTAATCACAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
AATTGAGGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAT
GCTTCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGG
GATTAGTAAGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGAT
GAAAGAAATATTTTTCTTGCCACATCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGT
TTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
GATGAACTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAAT
ATCCTTTATCCTAATGAGG
Found at i:529076 original size:476 final size:476
Alignment explanation
Indices: 526792--535356 Score: 3368
Period size: 476 Copynumber: 17.7 Consensus size: 476
526782 TCACAAAATG
* * *
526792 CTTTATCCTAATGAGGAGAAT-T-TGT-T-GTGCATAATCACAAAATGAATGAAGATCATTGCTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
*
526853 GAATCCATGTTTGTCACAAGTGAGGC-TCGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
66 GAATCCATGTTTGTCACAATTGAGGCAT-GAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
* *
526917 CTTTCCTATGAAACCAATGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCT
130 CTTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCT
* * * *
526982 AACCCTAAAAAGAGTAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAAATTTA
195 AATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTA
*
527047 ATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCGTGTATC
260 ATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATC
* **
527112 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAATGAA
325 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATTCA
* * * ** * *
527177 TG-TTGCCTTATTTAAGGGATGAGCTTTAATTCTAGGGAAAATAGGGCAAAGAAAAGATTTCCAC
390 TGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTTACAT
* *
527241 GCAAAAAAAAATCATTAACA-C
455 GCAAAAAAAAATCATCAATATC
* * **
527262 CATTTATCCTGATGAGGAGAATATGTTTATAGTGCCTAATCACAAGGTGAATGAAGATCATTACT
1 C-TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* ** * * * * * *
527327 CGAATCCACATTTGTCAAAATTTAGGCATGACCTTAGGCTTTGCAAAAATTGGTGGGAAGAACGC
65 AGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
** * * *
527392 CTTTCTTAAAAAACCAATGCTTCAATATC--GTATCCTTATTAGAAAACTAAGTTTGTGGTGCCT
130 CTTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCT
* * * * *
527455 AATCCTGAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGCA-ACAAACTTT
195 AATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAG-AGACAAACTTT
* * * * * * * * * *
527519 TATTTTGTTAAAAAT-GACTGAAATAAATACTTTTCTTG-CAGCATCAAATCAACATTGTCTTGT
259 AATTCTATCAAAAATGGA-TGAAAGAAATATTTTTCTTGCCA-CATCAAAGCATCAATGTCATGT
* * * *
527582 ATCCTAATGGAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGACAAT
322 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAAT
*
527647 TCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAAGAAAAGATTT
387 TCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAA-TAGGGCAAAGAAAAGATTT
* ** *
527711 ACTTGCAAAGGAAAATCATCCATATC
451 ACATGCAAAAAAAAATCATCAATATC
* * *
527737 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACGAAATGAATGGAGATCATTACTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
*
527802 GAATCCATGTTTGTCACAATTGAGGC-TCGAACTTAGGCTTTACAAAAGTTAGTGGGAAGAAAGC
66 GAATCCATGTTTGTCACAATTGAGGCAT-GAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
* *
527866 CTTTCCTATGAAACCAATGCTTCAATATCGTGTACCCTTATAAGAAGACTAAGTTTATGGTGCCT
130 CTTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCT
* * * *
527931 AACCCTAAAAAGAGTAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAAATTTA
195 AATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTA
527996 ATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATC
260 ATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATC
*
528061 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTATGAGAA-TCA
325 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATTC-
* * * * * *
528125 ATGCTTACCTTATTTAAGGCATGAAATTTGATTCTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
389 ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTTACA
*
528190 TGCAAAAAAAAATCATCAATATA
454 TGCAAAAAAAAATCATCAATATC
* * * * * * *
528213 GTTTATCCTAATAAGGAGAATGTGCTTGTAGTGCCTAATCAGAAAATGAATGAAGATCTTTA-TT
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * * *
528277 GCAATCCATGTTTGTCACAATTAAGGCACGAACATAGACTTTTCAAAAATTGGTGGAAAGAAA-C
66 G-AATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
* * * * * * *
528341 CTTTTCTTACGAAACAAAGGCATCAATATCGTGTATCTTTATGAGAAGACTAAGTTTATAGTGCC
130 C-TTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCC
* * * * * * * ** * *
528406 AAATCCTGAAAATAATCGAGATTAGTATGACTATTCTTACTTGTCTTATTTAAGAGACAAACTTT
194 TAATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTT
* * * ** * * * ** *
528471 AATTTTATCAAAAATGG-TCGAAATAATTGCTTTTCTTGCGACATGAATGTGTCAATGCCATGTA
259 AATTCTATCAAAAATGGAT-GAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTA
* * * * *
528535 TCCTAATGGAAGGAACGTGTTTTTGGTTCCCAATTATGAAAAGAATGGAGACTATTACTAGAATT
323 TCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATT
* * *
528600 CATGCTTCCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAAAAAAAGATTTA
388 CATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAA-TAGGGCAAAGAAAAGATTTA
** * *
528664 CATGCAAAGGAAAATCCTAAATATC
452 CATGCAAAAAAAAATCATCAATATC
*
528689 CTTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
528754 GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCC
66 GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCC
* * *
528819 TTTCTTATGAAGCCAATGCTTCAATATCGTGTATCCTTATTAGAAGGCTAAGTTTATGGTGCCTA
131 TTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTA
* * * * * *
528884 ATCCTGAGAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATGTAAGAGA-AAAGCTTTG
196 ATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAA-CTTTA
* ** * *
528948 ATTCTATCAAAAATGGATGAGAGAAATATTTTTCTTGTGACATCAAAGCGTTAATGTCATGTATC
260 ATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATC
* * * * *
529013 CAAATGAAAGGAATTTGATTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACAAGAATTCA
325 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATTCA
* * * * * *
529078 TGCTT--ATGAG--AA--GACT-AAGTTT-ATAGTGCCAAATCCTGAAAATAATCGAG-ATTAGT
390 TGCTTGCCTTAGTTAAGGGA-TGAACTTTGAT--T--CTAA--C-GAAAAT-A--GGGCA-AAG-
* ** * * **
529134 ATGACTATTCTTACTTGTCTTATTTAAGAGACAAA-C-TTTA-AT-
442 A-AAAGA-T-TTACATG-C--A---AA-A-AAAAATCATCAATATC
** * ** * * ** *
529176 -TTTATCAAAAATG-GTTGA-AATAATTGCTTT-TCTTG--TGA-CAC-GAATGTGTCAATG-TC
1 CTTTATC-CTAATGAG--GAGAAT--GTG-TTTATAGTGCCTAATCACAAAATGAATGAA-GATC
** * * * *
529232 ATGTATCCTAATGGAAGGAACGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGA
59 AT-TA--CT-A--GAA--TCCATG--TTT-G-TCACAAT--TG--AGGCAT-GA-AC--TTA-G-
* * * * * * **
529297 GAATTCTTGCTTGCCATAGTTAAGG-GATGAACTTTGATTTTAACGAAAAGTAGGCAAAGAAAAG
102 G----C-T--TTACAAAAGTT--GGTG-GGAA----GA----AA-G--C-CT-TTC---------
** ** * * * * * ** * *
529361 ATTTACATGCAAAGGAAAATCATCAATATCTTTTATCCTAATGAAG-AGAATGTGTTCATAGTGC
135 --TT--ATG-AAA-CCAATGCTTCAATATCGTGTATCCTTAT-AAGAAGACTAAGTTTATGGTGC
** * * * * ** * * ** *
529425 CTAAT-CACAAAATGAAT-GAAGATCACTACTAGAATCCATGTTTGTCACAATG---GAGGCATG
193 CTAATCCTGAAAA-GAATAG-GGATTAGTACGATTATTCATGTTTATC-TTATGTAAGAGACA--
* * * *** *** * * *
529485 AAC-TTAGGCTT-TA-CAAAAGTTGG-TGGGAAGAAA-GCCTTTCTTATGA-AGCCAATGCTTCA
253 AACTTTA--ATTCTATCAAAA-ATGGAT-GAAAGAAATATTTTTCTTGCCACA-TCAAAGCATCA
* * * * * ** * * * * * *
529544 ATATCGTGTATCCTTATTAGAAGG-CTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
313 ATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACT-
* * * ** * ** * *
529608 G-TATG-GCTATTCATGTTTATCTTA-TGTAAGAGAAAAACTTTGATTCTATCAAAAAT-GGATG
376 GTTACGAG-AATTCATGCTTGCCTTAGT-TAAGGGATGAACTTTGATTCTAACGAAAATAGG--G
*** * * ** * ** * *
529669 -AAAGAAATTTTTTTTCTTGTGACATCAAAGCATCAATGTC
437 CAAAGAAA-AGATTTACATGCAAAAAAAAATCATCAATATC
* * * * * * * * * * *
529709 ATGTATCCAAATGA-AAGGAATGTGTTTTTGGTTCCCAATCATGAAAA-GAATGGAGA-CTGTTA
1 CTTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATC-ATTA
* * * * ** * * * * * * **
529771 CAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTA--ATTCTA-AGGAAAATAGG-GCAAA
63 CTAGAATCCATGTTTGTCACAATTGAGGCATGAAC-TTAGGCTT-TACA--AAAGTTGGTGGGAA
* * ** * * * * * * * * *
529832 GAAAAG-ATTTC-CATGCAAAAGAAAAT-CATT-AACACCATTTATCCTAATGAGGAGAATATGT
124 G-AAAGCCTTTCTTATG--AAA-CCAATGC-TTCAATATCGTGTATCCTTATAAGAAGACTAAGT
** * ** * * * * ** * *
529893 TTACAGTACCTAATCAC--AAGGTGAAT-GAAGATCATTACTCGA--ATCCACATTTGTCATAAT
184 TTATGGTGCCTAATC-CTGAA-AAGAATAG-GGATTAGTA--CGATTATTCATGTTTATC-TTAT
* * * * * **** * * * *
529953 -T--GAGGCACGACCTTAGGCTT-TA-CAAAAATTGG-TGGGAAG-AACGCCTTTCTTACGAAAC
243 GTAAGAGACA-AACTTTA--ATTCTATCAAAAA-TGGAT-GAAAGAAATATTTTTCTTGCCACAT
* * * * * * * * * * * *
530011 CAATGCTTCAATATCGTGTATCCTTATTAGAA-GACTATGTTTGTGGTGCCTAATCCTGAAAAGA
303 CAAAGCATCAATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGA
* * * ** ** * * ** ** ***
530075 ATGGGGATTAG-TAAGATTATTCATTTTTGTCTTATTTAAGCAACAAACTTTGATTCTATTAAAA
367 ATGGAGACT-GTTACGAGAATTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAA
* ** * * * * ** * *
530139 ACAATTG-AAAGAAATA-CTTTTCTTGCAACATCAAATCATCATTGTC
431 A-TAGGGCAAAGAAA-AGATTTACATGCAAAAAAAAATCATCAATATC
* * * * * * * * * * *
530185 ATGTATCCTAATGA-AAGGAATTTGATTT-TGGTTCCCAATCATGAAAA-GAGTGGAGA-CTGTT
1 CTTTATCCTAATGAGGA-GAATGTG-TTTATAGTGCCTAATCA-CAAAATGAATGAAGATC-ATT
* * * * ** * * * * * ** * ** * **
530246 ACGAGAATTCATGCTTGCCTTAGTTAAGGGATGGACTTTGATTTTAAAGAAAACTAG-GCAAAGA
62 ACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACA-AAAGTTGGTGGGAAG-
* * * ** * * * * * ** * **
530310 AAAG-ATTTACCTA-CAAAGGAAAAT-CATCAAAATCATTTATCCTAACGAGAAGAATGTGTTTA
125 AAAGCCTTT-CTTATGAAA--CCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTA
* * * * * **
530372 TAGTGCCTAAT-C-GCAAAATTAAT-GGAGACCATTATTA-GA--ATCCATGTTTGTTACAAAT-
187 TGGTGCCTAATCCTG-AAAA-GAATAGG-G---ATTAGTACGATTATTCATGTTT-AT-CTTATG
* * * * ** * ** ** * *
530430 T-CG-GCACGAA-GTTAGACTT-TA-CAAAAATTGG-CGGGAG-GATAGCCTTAGTTGCGAAATC
244 TAAGAG-ACAAACTTTA-A-TTCTATCAAAAA-TGGATGAAAGAAATA-TTTTTCTTGCCACATC
** * * * * * *
530488 AAAGCATCAACATCATGTAGTCCT-ATGAGAA-GACTATGTTTATGGTGCCTAATCCTTG-AAAG
304 AAAGCATCAATGTCATGTA-TCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAAT-CATGAAAAG
* * ** * ** * * * * *
530550 AATGGGGATTAGTGT--GACTATTCATGTTTGTGTTATTTAAGAGA-CAAATATTGATTCTATC-
366 AATGGAGACT-GT-TACGAGAATTCATGCTTGCCTTAGTTAAGGGATGAACT-TTGATTCTAACG
* * * * * ** * *
530611 AAAA-ACGGTTG-AAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGT-
428 AAAATA-GG--GCAAAGAAAAGATTTACATGCAAAAAAAAATCATCAATATC
* * * * * ** * * **
530660 CTTGTATCCTATTGAATG-GAATGTGTTTTTAGTTCCCAATCATGAAAGGAATGGAGATTGTTA-
1 CTT-TATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * ** * * * * * * ** ** **
530723 TGAGAATCAATGCTTGCCTTATTTAAGGGATAAACTT-TGATTCTAC--TTGTCTTAT-TTAAGA
64 T-AGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTT-TACAAAAGT-TGGTGGGAAGA
* * ** * * * * *
530784 GAAACTTTGATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGTGACATCCAAGCGTCAATG
126 -AAGC-CT--TTC--T------T--ATGAAA-CCA-A---TGC-T-TCA-AT---ATCGT--GTA
* ** ** * * * * *
530849 TCATGTATCCAAATGAA-AGGAA-TTTGATTTTG-GT--TCC-CAATCAAGAA-A-TGAGT-GGA
164 TCCT-TAT---AA-GAAGACTAAGTTT-ATGGTGCCTAATCCTGAA--AAGAATAGGGATTAGTA
* * * * * * * * *
530905 -GACTGTTACAAGAATTCATGCTTCTG--AGAAGACTAAGTTTATAGTGCCAAATCCTAAAAAT-
221 CGATTATT-CATG--TTTAT-CTTATGTAAG-AGACAAACTTTA-A-T-TC-TAT-C-AAAAATG
* * * ** * * * *
530966 AATCGAGATTAGTATGACTATTCTTAT-TTGTCTTATTTAAGAG-A-CAAACTTTGATTTTATCA
275 GAT-GA-A--AG-A--AATATT-TT-TCTTGCCACA-TCAA-AGCATC-AA-TGTCA-TGTATC-
** ** * * **** * ** *
531028 AAAATGGTTGAAAAAAATGCT-TTTCTTGCG-ACACCAAT-GTGTCAATCTCATGTATCCTATTG
325 CTAA----TGAAAGGAATG-TGTTT-TTG-GTTC-CCAATCATG--AAAAGAATGGAGACTGTT-
* * ** * * * ** * * * * *
531090 GA-AAGAATGT-GTTTTTGGTTCC-TAATCATGAAAAGAA-TGGTGACTATTACGAGAAATCATG
379 -ACGAGAAT-TCATGCTT-G--CCTTAGTTAAGGGATGAACT-TTGATTCTAACGA-AAAT-A-G
* *
531151 CTTGCCTTAGTTAAGGGATGAACTTTGATTTTA-ATGAAAACTAGGTAAAGAAAAGATTTACATG
435 ---GGC--A---AA--GA--AA---AGA-TTTACATG----C-A---AAA-AAAA-A--T-CAT-
531215 CAAAGGAAAATTATCAATGTC
470 C--------A--AT--A--TC
* * *
531236 CTTTATCTTAATGACGAGAAAGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * *
531301 GAATCCATG-TTGTCACAGTGGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAA-CC
66 GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCC
* * * * *
531364 ATTTCTTACGAAACCAATGCTTTAGTATCGTGTATCCTAATCAA-AAGGCTAAGTTTATGGTGCC
131 -TTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTAT-AAGAAGACTAAGTTTATGGTGCC
* * * * *
531428 TAATCTTAAAAAGAATGGGGATTAGTATGATTTTTCATGTTTATCTTATGTAAGAGACAAACTTT
194 TAATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTT
* * ** * *
531493 GATTCTGTCAAAAATGGATGAAAGAAATATTTTTCTTGTGACACCAAAGCGTCAATGTCATGTAT
259 AATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTAT
* * * * *
531558 CCTAATGAAAGAAATGTGTTTTTAGTTCCAAATCATGAAAAGAATGGAGATTGTTATGAGAA-TC
324 CCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATTC
* * * * * * *
531622 AATGCTTGCCTTATTTAAGGGATGAACTTTAATTCTAAGGAAAATAAGGCAAAAAAAAAATTTTC
389 -ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTTAC
*
531687 ATGCAAAAGAAAATCATCAATA-C
453 ATGCAAAAAAAAATCATCAATATC
* * * * * ** * *
531710 CATTAATCCCAATAAGGAGAATATGTTTATAGTCCCTAATCACAAGGTGAATGAAGATTATTTCT
1 C-TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*** * * * * * * *
531775 AGAATCCCCATTTGTCATAATTGAGACACGACCTTACGCCTTACAAAAGTTGGTGGGAAGAACGC
65 AGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
* * * *
531840 CTTTCTTATGAAACCAATGTTTCAATATCGTGTTTCCTTATTAGAAGACTAAGTTTGTGGTGCCT
130 CTTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCT
* * * * * * * * *
531905 AATCCTAAAAAGAATGGGGATTAGTAAGATTATTCATTTTTGTCTTATTTAAGTGATAAACTTTG
195 AATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTA
* * * * * *
531970 ATTCT-GCTAAAAAT-GATTGAAAAAAATACTTTTC-T-CACAGCATCAAATCGTCATTGTCATG
260 ATTCTATC-AAAAATGGA-TGAAAGAAATATTTTTCTTGC-CA-CATCAAAGCATCAATGTCATG
* * * * * **
532031 TATCCTAATGGAAGGAATTTGATTTTAGTTCCCAATCATGAAAAGAATGGAAACTGTTATAAGAA
321 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAA
* * * *
532096 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAATGAAAACTA-GGCAAAGAAAATAGT
386 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAA-TAGGGCAAAGAAAAGATT
* **
532160 TACCTGCAAAGGAAAATCATCAATATC
450 TACATGCAAAAAAAAATCATCAATATC
** * * * * *
532187 AGTTATCCT-A--ACGAGAACGTGTTTATAGTGCCTAATCACAACATTAATAAAGATCATTACTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * ** * * * *
532249 GAATCCATGTTTGTCACAAATT-TGGCA-CAGAGTTAAACTTTACAAAAATTGGTAGGAGGATAG
66 GAATCCATGTTTGTCAC-AATTGAGGCATGA-ACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAG
* * * * ** ** * * * *
532312 CC-TTATT-TGCAAAATCAAAGCATCAACGTCACGTAGCCTTATGAGAAGATTATGTTTATGGTG
129 CCTTTCTTATG--AAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTG
* * * * *
532375 CCTAATCCTTG-AAAGAAT-GGGTATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAA
192 CCTAATCC-TGAAAAGAATAGGG-ATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAA
* * ** * * *
532438 -TATTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTACAACACCAAAGCATCAATGTCA
255 CT-TTAATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCA
* * * * * *
532502 TGTATCCTATTGAACGGAATGTGCTTTTGGTTCCCAATCATGAAAGGAATAGAGACTGTTATGAG
319 TGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAG
* * * *
532567 AA-TCAATGCTTGCCTTATTTAGGGGATGAACTTTGATTCTAAGGAAAATAAGGCAAAGAAAAGA
384 AATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGA
* * *
532631 TTTCCATGCAAAAAAAAAAATCGTCAGTATC
448 TTTACATGC--AAAAAAAAATCATCAATATC
* * * * * * * *
532662 GTGTATCCTAATAAGGAGAATGTGTTTGTAGTGCTTAATCAGAAAATGAATGAAGATCGTTATTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * *** * *
532727 CAATCCATGTTTGTCACAATTGAGGCACGAACATACTTTTTACAAATA-TTGGT-GGAATTAAAC
66 GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAA-AGTTGGTGGGAA-GAAAG
* * * * *
532790 CCTTT-TTACGAAACAAAAT-CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATAGTGC
129 CCTTTCTTATGAAAC-CAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGC
* * * * * * * * *
532853 CAAATCCTGAAAATAATCA-AGATTAGTATGACTATTCTTATTTGTCTTATTTAAGAGACAAACT
193 CTAATCCTGAAAAGAAT-AGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACT
* * * ** ** * * **
532917 TTGATTTTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGGCACCAATGTGTCAATGTCATGT
257 TTAATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGT
* * * *
532982 ATCCTAATGGAAGGAATGTGTTTTTGTTTCCCAATCATGAAAAGAATAGAGACTGTTATGAGAA-
322 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAAT
* * * * * * * *
533046 TCAATGCTTGCCATATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAACAAAAGAATT
387 TC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTT
* * * *
533111 -CTATTCAAAAGAATACCATCAATATC
451 AC-ATGCAAAAAAAAATCATCAATATC
* * * * * * *
533137 ATTTATCC-AACTAAAGAGAATATGTTTATAGTGCCTAGTCAGAAAATGAATGAAGATCGTTACT
1 CTTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*** * * * *
533201 AGAATCCAAAATTGTCACAAATGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAGGC
65 AGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGC
* * * * ** *
533266 CTTTCTTAGGAAACCAAAGCATCAATATCGTGTATCGTTATGTGAAGACTAAGTTTATGGTGCCA
130 CTTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCT
* * * * * * * * * * * *
533331 AATCGTGGAAAGAA-CGGTATTAGTATGACTATTTAGGTTTGTCTTATTTAAGAGATAAACTTTG
195 AATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTA
* * * ** * ** * *
533395 ATTCTATTAAAAAGGGTTGAAAGAAATGCTTTTCTTGCGACCCCAAAGCAGCAATGTCATATATC
260 ATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATC
* * * * * * * * *
533460 CTAATGAAAGGAATGTGTTTCTAGTTCCTAACCATTAAAATAGTAGAGACTGTTATGAGAA-TCA
325 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATTC-
* * * * * * * *
533524 ATGCTTGCTTTATTTAAGGGATAAACTTTGATTTTAAAGAAAATCGGGCAAAGAAACGGTTTACA
389 ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTTACA
* * *
533589 TGCTAAAGAAAATTATCAATATC
454 TGCAAAAAAAAATCATCAATATC
* * *
533612 TTTTATCTTAATGGGGAGAA-GATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
1 CTTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * * * *
533676 AGAATCCTTGTTTGTCATAATTGATGCACGAAGTTAGACTTTACCAAAA-TTGG-CGGAAGGAAA
65 AGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTA-CAAAAGTTGGTGGGAA-GAAA
* *** * * * * * * *
533739 GCCTTACTTGCAAAATCAAAGCATCAACATCATGTAGT-CTTATGAGAAGACTATGTTTATGGTG
128 GCCTTTCTTATGAAACCAATGCTTCAATATCGTGTA-TCCTTATAAGAAGACTAAGTTTATGGTG
* * * * *
533803 CCTAATCCTTG-AAAGAGTAGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGACAAAC
192 CCTAATCC-TGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAAC
* * * * * * * * *
533867 TTTGATTCTATAAAAAATGGTTAAAAGAAATAGTTTTCTTGCGACACCAATGTATCAATGTCATG
256 TTTAATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATG
* * * * *
533932 TA-CGCTAAT-AGAAGGAAGGTGTTTTTTGTTCCGAATCATGAAAA-AAGTGAAGACTATTACGA
321 TATC-CTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAA-TGGAGACTGTTACGA
** * * * * * *
533994 GAA-TCAATATTTGCCTTACTTAAGGGATGAACTTTAATTTTCA-GTAAAATAAGGTAAAGAAAA
383 GAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACG-AAAATAGGGCAAAGAAAA
* ** *
534057 GATTTCCATGCAAAAGGAAATCACCAATATC
446 GATTTACATGCAAAAAAAAATCATCAATATC
* * * *
534088 ATTTATCCTAATGAGGAGAATGTGTTTAAAATGCCTAATCACAAAATGAATGAAGGTCATTACTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * * *
534153 GAATCCATGTTTG-C-CAGTTGAGGCACGAACTTAGACATTATAAAAATTGATGGGAAGAAAGCC
66 GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCC
** * * * *
534216 TTTCTTACAAAACCAATGCTTCAATATCATGTATCCTTATTAGAAAACTACGTTTATGGTGCCTA
131 TTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTA
* * * * * * * * *
534281 ATCCAGAAAAGAATGGGGATTAGTATGATTATTCATTTTTGTCTTATTTAAGAAATAAACTTTGA
196 ATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTAA
* * * *
534346 TTCT-GCTAAAAA-CGATTGAAAGAAATACTTTTCTTG-CAGCATCAAATCATCAATGTCATGTA
261 TTCTATC-AAAAATGGA-TGAAAGAAATATTTTTCTTGCCA-CATCAAAGCATCAATGTCATGTA
* * *
534408 TCCTAATGAAAGGAATATGATTTTT-GTTCCCAATCATGAATAGAATGGGGA-TAGTTACGAGAA
323 TCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCATGAAAAGAATGGAGACT-GTTACGAGAA
* *
534471 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAACGAAAACTA-GGCAAGGAAAAGATT
386 TTCATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAA-TAGGGCAAAGAAAAGATT
534535 TACATGC-------AATCAT---TATC
450 TACATGCAAAAAAAAATCATCAATATC
* * *
534552 ATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
1 CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * *
534617 GAATCCATGTTTGTCACAATTGAGGCACGAAGTTAGACTTTACAAAAATTGATGGGAGGAAAGCC
66 GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCC
* * * * * * * * * *
534682 TTAC--ATGCAAAATCAAAGCATCAACATCATGTAGT-TTTATGAGAAGGCTATGTTTATGGTGC
131 TTTCTTATG--AAACCAATGCTTCAATATCGTGTA-TCCTTATAAGAAGACTAAGTTTATGGTGC
* * * * * * * *
534744 CTAAACCTTG-AAAGAATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGGCAAACA
193 CTAATCC-TGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACT
* * * * ** ** * *
534808 CTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGT
257 TTAATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGT
* * * * *
534873 ATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATGAAAGGAATGGAGACTGTTATGAGCA-
322 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAAT
* * * *
534937 TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAATGATTT
387 TC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTT
* * *
535002 CCATGCAAACAAAAATCGTCAATATC
451 ACATGCAAAAAAAAATCATCAATATC
* ** * * * *
535028 GTTTATCCTAAAAAGGAGAATGTGTTTGA-ACTGCCTAAGTTAAAAAATGAATGAAGATCATTAT
1 CTTTATCCTAATGAGGAGAATGTGTTT-ATAGTGCCTAA-TCACAAAATGAATGAAGATCATTAC
* * * * ** *
535092 TACAATCCATATTTGTCACAATTGAGGCACGAACATACTCTTTACAAATA-TTGGT-GGAATTAA
64 TAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAA-AGTTGGTGGGAA-GAA
* * * * * *
535155 ACCCTTT-TTACGAAACAAAAT-CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATAGT
127 AGCCTTTCTTATGAAAC-CAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGT
* * * * * * * * * *
535218 GCCAAATCCTCAAAAATAATCA-AGATTAGTATGACTATTCTTATTTGTCTTATTTAAGAGACAA
191 GCCTAATCCT-GAAAAGAAT-AGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAA
* * * ** * *
535282 ACTTTGATTTTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCA
254 ACTTTAATTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCA
535347 TGTATCCTAA
319 TGTATCCTAA
535357 GTTAAAAAAT
Statistics
Matches: 6276, Mismatches: 1309, Indels: 1013
0.73 0.15 0.12
Matches are distributed among these distances:
464 78 0.01
465 10 0.00
466 301 0.05
467 11 0.00
469 2 0.00
470 8 0.00
471 23 0.00
472 20 0.00
473 543 0.09
474 512 0.08
475 764 0.12
476 2193 0.35
477 743 0.12
478 109 0.02
479 18 0.00
480 1 0.00
481 3 0.00
482 1 0.00
483 6 0.00
484 1 0.00
485 12 0.00
486 14 0.00
487 14 0.00
488 10 0.00
489 10 0.00
490 7 0.00
491 9 0.00
492 2 0.00
493 4 0.00
494 5 0.00
495 7 0.00
496 5 0.00
497 10 0.00
498 5 0.00
499 6 0.00
500 10 0.00
501 15 0.00
502 14 0.00
503 12 0.00
504 8 0.00
505 11 0.00
506 4 0.00
507 7 0.00
508 7 0.00
510 2 0.00
511 3 0.00
512 1 0.00
513 1 0.00
514 8 0.00
515 12 0.00
516 14 0.00
517 8 0.00
518 5 0.00
519 6 0.00
520 8 0.00
521 18 0.00
522 5 0.00
523 20 0.00
524 17 0.00
525 14 0.00
526 11 0.00
527 22 0.00
528 3 0.00
529 22 0.00
530 8 0.00
531 14 0.00
532 7 0.00
533 16 0.00
534 16 0.00
535 12 0.00
536 8 0.00
537 7 0.00
538 3 0.00
539 5 0.00
540 6 0.00
541 3 0.00
542 18 0.00
543 93 0.01
544 82 0.01
545 18 0.00
546 9 0.00
547 17 0.00
548 21 0.00
549 18 0.00
550 7 0.00
551 10 0.00
552 1 0.00
554 1 0.00
555 4 0.00
556 3 0.00
557 3 0.00
560 4 0.00
561 2 0.00
562 5 0.00
564 1 0.00
569 1 0.00
570 1 0.00
571 2 0.00
572 3 0.00
574 22 0.00
575 60 0.01
576 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
CTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAAGCC
TTTCTTATGAAACCAATGCTTCAATATCGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTA
ATCCTGAAAAGAATAGGGATTAGTACGATTATTCATGTTTATCTTATGTAAGAGACAAACTTTAA
TTCTATCAAAAATGGATGAAAGAAATATTTTTCTTGCCACATCAAAGCATCAATGTCATGTATCC
TAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTGTTACGAGAATTCAT
GCTTGCCTTAGTTAAGGGATGAACTTTGATTCTAACGAAAATAGGGCAAAGAAAAGATTTACATG
CAAAAAAAAATCATCAATATC
Found at i:529263 original size:226 final size:226
Alignment explanation
Indices: 528854--529308 Score: 572
Period size: 226 Copynumber: 2.0 Consensus size: 226
528844 ATCGTGTATC
* * * * * * *
528854 CTTATTAGAAGGCTAAGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATGACTATTCA
1 CTTATGAGAAGACTAAGTTTATAGTGCCAAATCCTGAAAAGAATCGAGATTAGTATGACTATTCA
** * * *
528919 TGTTTCTCTTATGTAAGAGAAAAGCTTTGATTCTATCAAAAATGGATGAGAGAAATATTTTTCTT
66 TACTTCTCTTATGTAAGAGAAAAGCTTTAATTCTATCAAAAATGGATGAAAGAAATACTTTTCTT
* **
528984 GTGACATCAAAGCGTTAATGTCATGTATCCAAATGAAAGGAATTTGATTTTGGTTCCCAATCATG
131 GTGACATCAAAGCGTCAATGTCATGTATCCAAATGAAAGGAACGTGATTTTGGTTCCCAATCATG
* *
529049 AAAAGAGTGGAGACTGTTACAAGAATTCATG
196 AAAAGAATGGAGACTATTACAAGAATTCATG
* *
529080 CTTATGAGAAGACTAAGTTTATAGTGCCAAATCCTGAAAATAATCGAGATTAGTATGACTATTCT
1 CTTATGAGAAGACTAAGTTTATAGTGCCAAATCCTGAAAAGAATCGAGATTAGTATGACTATTCA
* * * * * * *
529145 TACTTGTCTTATTTAAGAGACAAA-CTTTAATTTTATCAAAAATGGTTGAAATAATTGCTTTTCT
66 TACTTCTCTTATGTAAGAGA-AAAGCTTTAATTCTATCAAAAATGGATGAAAGAAATACTTTTCT
* * * * *
529209 TGTGACA-CGAATGTGTCAATGTCATGTATCCTAATGGAAGGAACGTGTTTTTGGTTCCCAATCA
130 TGTGACATC-AAAGCGTCAATGTCATGTATCCAAATGAAAGGAACGTGATTTTGGTTCCCAATCA
** *
529273 TGAAAAGAATGGAGACTATTATGAGAATTCTTG
194 TGAAAAGAATGGAGACTATTACAAGAATTCATG
529306 CTT
1 CTT
529309 GCCATAGTTA
Statistics
Matches: 193, Mismatches: 34, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
225 1 0.01
226 189 0.98
227 3 0.02
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (226 bp):
CTTATGAGAAGACTAAGTTTATAGTGCCAAATCCTGAAAAGAATCGAGATTAGTATGACTATTCA
TACTTCTCTTATGTAAGAGAAAAGCTTTAATTCTATCAAAAATGGATGAAAGAAATACTTTTCTT
GTGACATCAAAGCGTCAATGTCATGTATCCAAATGAAAGGAACGTGATTTTGGTTCCCAATCATG
AAAAGAATGGAGACTATTACAAGAATTCATG
Found at i:530792 original size:31 final size:32
Alignment explanation
Indices: 530735--530798 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
530725 AGAATCAATG
*
530735 CTTGCCTTATTTAAGGGATAAACTTTGATTCTA
1 CTTGCCTTATTTAA-GGAGAAACTTTGATTCTA
*
530768 CTTGTCTTATTTAA-GAGAAACTTTGATTCTA
1 CTTGCCTTATTTAAGGAGAAACTTTGATTCTA
530799 TCAAAAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 16 0.55
33 13 0.45
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (32 bp):
CTTGCCTTATTTAAGGAGAAACTTTGATTCTA
Found at i:533432 original size:475 final size:473
Alignment explanation
Indices: 530929--535356 Score: 4690
Period size: 475 Copynumber: 9.3 Consensus size: 473
530919 TTCATGCTTC
* * * * * *
530929 TGAGAAGACTAAGTTTATAGTGCCAAATCCTAAAAATAATCGAGATTAGTATGACTATTCTTATT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* *
530994 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTTGAAAAAAATGCTTTTCTTGCGA
66 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGA
* ** * * * *
531059 CACCAATGTGTCAATCTCATGTATCCTATTGGAAAGAATGTGTTTTTGGTTCCTAATCATGAAAA
131 CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTGTTTTT-GTTCCCAATCATGAAAA
* * * * *
531124 GAATGGTGACTATTACGAGAAATC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAATGA
195 GAATGGAGACTGTTATGAG-AATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGA
* * * * * * * *
531188 AAACT-AGGTAAAGAAAAGATTTACATGCAAAGGAAAATTATCAATGTCCTTTATCTTAATGACG
259 AAA-TAAGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATC-CAATAAGG
*
531252 AGAAAGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTGTCA
321 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * * *
531316 CAGTGGAGGCACGAACTTAGGCTTTACAAAAGTTGGTGGGAAGAAA-CCATTTCTTACGAAACCA
386 CAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTACGAAACCA
* * * * *
531380 ATGCTTTAGTATCGTGTATCCTAA
450 AAGCATCAATATCGTGTATCCTTA
* * * * * * *
531404 TCAAAAGGCTAAGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGATTTTTCATGTT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * * ** *
531469 TATCTTATGTAAGAGACAAACTTTGATTCTGTCAAAAATGGATGAAAGAAATATTTTTCTTGTGA
66 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGA
* * * *
531534 CACCAAAGCGTCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTAGTTCCAAATCATGAAAA
131 CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTGTTTTT-GTTCCCAATCATGAAAA
* * *
531599 GAATGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTCTAAGGAA
195 GAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * *
531664 AATAAGGCAAAAAAAAAATTTTCATGCAAAAGAAAATCATCAATACCATTAATCCCAATAAGGAG
260 AATAAGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTAT-CCAATAAGGAG
* * ** * * *** *
531729 AATATGTTTATAGTCCCTAATCACAAGGTGAATGAAGATTATTTCTAGAATCCCCATTTGTCATA
323 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACA
* * * * * * *
531794 ATTGAGACACGACCTTACG-CCTTACAAAAGTTGGTGGGAAGAACGCCTTTCTTATGAAACCAAT
388 ATTGAGGCACGAACTTA-GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
** *
531858 GTTTCAATATCGTGTTTCCTTA
452 GCATCAATATCGTGTATCCTTA
* * * * * *
531880 TTAGAAGACTAAGTTTGTGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAAGATTATTCATTTT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * * * * **
531945 TGTCTTATTTAAGTGATAAACTTTGATTCT-GCTAAAAATGATTGAAAAAAATACTTTTCTCAC-
66 TGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAATGGTTGAAAGAAATGCTTTTCTTGCG
* * * * * *
532008 AGCATCAAATCGTCATTGTCATGTATCCTAATGGAAGGAATTTGATTTTAGTTCCCAATCATGAA
130 A-CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTG-TTTTTGTTCCCAATCATGAA
* * * *
532073 AAGAATGGAAACTGTTATAAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTAAT
193 AAGAATGGAGACTGTTATGAGAA-TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAG
* * * * * *
532137 GAAAACT-AGGCAAAGAAAATAGTTACCTGCAAAGGAAAATCATCAATATCAGTTATCC--TAAC
257 GAAAA-TAAGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCAATAAG
* * * *
532199 GAGAACGTGTTTATAGTGCCTAATCACAACATTAATAAAGATCATTACTAGAATCCATGTTTGTC
320 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * * * * *
532264 ACAAATT-TGGCAC-AGAGTTAAACTTTACAAAAATTGGTAGGAGGATAGCCTTAT-TTGCAAAA
385 AC-AATTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT-TCTTACGAAA
* ** ** *
532326 TCAAAGCATCAACGTCACGTAGCCTTA
447 CCAAAGCATCAATATCGTGTATCCTTA
* * * ** *
532353 TGAGAAGATTATGTTTATGGTGCCTAATCCTTGAAAGAATGGGTATTAGTATGACTATTCATGTT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * *
532418 TGTCTTATTTAAGAGGCAAA-TATTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTACA
66 TGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCG
* *
532482 ACACCAAAGCATCAATGTCATGTATCCT-ATTGAACGGAATGTGCTTTTGGTTCCCAATCATGAA
130 ACACCAAAGCATCAATGTCATGTATCCTAATGGAA-GGAATGTG-TTTTTGTTCCCAATCATGAA
* * * *
532546 AGGAATAGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAGGGGATGAACTTTGATTCTAAGG
193 AAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * *
532611 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAAAATCGTCAGTATCGTGTATCCTAATAA
258 AAAATAAGGCAAAGAAAAGATTT-CATGC--AAAAGAAAATCATCAATATCATTTATCC-AATAA
* * * * * *
532676 GGAGAATGTGTTTGTAGTGCTTAATCAGAAAATGAATGAAGATCGTTATTACAATCCATGTTTGT
319 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* *** * * *
532741 CACAATTGAGGCACGAACATACTTTTTACAAATATTGGT-GGAATTAAACCCTTT-TTACGAAAC
384 CACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTACGAAAC
* *
532804 AAAATCATCAATATCGTGTATCCTTA
448 CAAAGCATCAATATCGTGTATCCTTA
* * * *** * *
532830 TGAGAAGACTAAGTTTATAGTGCCAAATCCTGAAAATAATCAAGATTAGTATGACTATTCTTATT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* *
532895 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGG
66 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGA
* **
532960 CACCAATGTGTCAATGTCATGTATCCTAATGGAAGGAATGTGTTTTTGTTTCCCAATCATGAAAA
131 CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTGTTTTTG-TTCCCAATCATGAAAA
* * *
533025 GAATAGAGACTGTTATGAGAATCAATGCTTGCCATATTTAAGGGATGAACTTTAATTTTAAGGAA
195 GAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * * * *
533090 AATAAGGCAAACAAAAGAATTCTATTCAAAAGAATACCATCAATATCATTTATCCAACTAAAGAG
260 AATAAGGCAAAGAAAAGATTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCAA-TAAGGAG
* * * * ***
533155 AATATGTTTATAGTGCCTAGTCAGAAAATGAATGAAGATCGTTACTAGAATCCAAAATTGTCACA
323 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACA
* * * *
533220 AATGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAGGCCTTTCTTAGGAAACCAAAG
388 ATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
*
533285 CATCAATATCGTGTATCGTTA
453 CATCAATATCGTGTATCCTTA
* * ** * * * *
533306 TGTGAAGACTAAGTTTATGGTGCCAAATCGTGGAAAGAA-CGGTATTAGTATGACTATTTAGGTT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * *
533370 TGTCTTATTTAAGAGATAAACTTTGATTCTATTAAAAAGGGTTGAAAGAAATGCTTTTCTTGCGA
66 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * * * * *
533435 CCCCAAAGCAGCAATGTCATATATCCTAATGAAAGGAATGTGTTTCTAGTTCCTAACCATTAAAA
131 CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTGTTT-TTGTTCCCAATCATGAAAA
* * * * * *
533500 TAGTAGAGACTGTTATGAGAATCAATGCTTGCTTTATTTAAGGGATAAACTTTGATTTTAAAGAA
195 GAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
** * * * * * * **
533565 AATCGGGCAAAGAAACGGTTTACATGCTAAAGAAAATTATCAATATCTTTTATCTTAATGGGGAG
260 AATAAGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATC-CAATAAGGAG
* *
533630 AA-GATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCAT
323 AATG-TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
* * * * * * * *
533694 AATTGATGCACGAAGTTAGACTTTACCAAAATTGG-CGGAAGGAAAGCCTTACTTGCAAAATCAA
387 AATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTACGAAACCAA
* *
533758 AGCATCAACATCATGTAGT-CTTA
451 AGCATCAATATCGTGTA-TCCTTA
* * ** * *
533781 TGAGAAGACTATGTTTATGGTGCCTAATCCTTGAAAGAGTAGGGATTAGTATGACTATTCATGTT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * *
533846 TCTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTTAAAAGAAATAG-TTTTCTTGCG
66 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAT-GCTTTTCTTGCG
* * * * *
533910 ACACCAATGTATCAATGTCATGTA-CGCTAATAGAAGGAAGGTGTTTTTTGTTCCGAATCATGAA
130 ACACCAAAGCATCAATGTCATGTATC-CTAATGGAAGGAATGTG-TTTTTGTTCCCAATCATGAA
* * * ** * * *
533974 AA-AAGTGAAGACTATTACGAGAATCAATATTTGCCTTACTTAAGGGATGAACTTTAATTTTCAG
193 AAGAA-TGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAG
* * * * *
534038 TAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGGAAATCACCAATATCATTTATCCTAATGAG
257 GAAAATAAGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCC-AATAAG
* * *
534103 GAGAATGTGTTTAAAATGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCATGTTTG-C
320 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * *
534167 -CAGTTGAGGCACGAACTTAGACATTATAAAAATTGATGGGAAGAAAGCCTTTCTTACAAAACCA
385 ACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCA
* * *
534231 ATGCTTCAATATCATGTATCCTTA
450 AAGCATCAATATCGTGTATCCTTA
* * * * * *
534255 TTAGAAAACTACGTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTATGATTATTCATTT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCTA-AAAAGAATGGGGATTAGTATGACTATTCATGT
* * * * * *
534319 TTGTCTTATTTAAGAAATAAACTTTGATTCT-GCTAAAAACGATTGAAAGAAATACTTTTCTTGC
65 TTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAATGGTTGAAAGAAATGCTTTTCTTGC
* * * *
534383 -AGCATCAAATCATCAATGTCATGTATCCTAATGAAAGGAATATGATTTTTGTTCCCAATCATGA
129 GA-CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTG-TTTTTGTTCCCAATCATGA
* * * *
534447 ATAGAATGGGGA-TAGTTACGAGAATTC-ATGCTTGCCTTAGTTAAGGGATGAACTTTGATTTTA
192 AAAGAATGGAGACT-GTTATGAGAA-TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA
* *
534510 ACGAAAACT-AGGCAAGGAAAAGATTTACATGC-------AATCAT---TATCATTTATCCTAAT
255 AGGAAAA-TAAGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCC-AAT
* * *
534564 GAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTT
317 AAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
534629 GTCACAATTGAGGCACGAAGTTAGACTTTACAAAAATTGATGGGAGGAAAGCCTTACATGCAAAA
382 GTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
* * * *
534694 TCAAAGCATCAACATCATGTAGT-TTTA
447 CCAAAGCATCAATATCGTGTA-TCCTTA
* * ** *
534721 TGAGAAGGCTATGTTTATGGTGCCTAAA-CCTTGAAAGAATGGGGATTAGTATGAATATTCATGT
1 TGAGAAGACTAAGTTTATGGTGCC-AAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
* ** * *
534785 TTGTCTTATTTAAGAGGCAAACACTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGTG
65 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCG
* *
534850 ACACCAAAGCATCAATGTCAAGTATCCT-ATTGAATGGAATGTGTTTTTGGTTCCCAATCATGAA
130 ACACCAAAGCATCAATGTCATGTATCCTAATGGAA-GGAATGTGTTTTT-GTTCCCAATCATGAA
* *
534914 AGGAATGGAGACTGTTATGAGCATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGG
193 AAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * *
534979 AAAATAGGGCAAAGAAATGATTTCCATGCAAACA-AAAATCGTCAATATCGTTTATCCTAAAAAG
258 AAAATAAGGCAAAGAAAAGATTT-CATGCAAA-AGAAAATCATCAATATCATTTATCC-AATAAG
* * * * * *
535043 GAGAATGTGTTTGA-ACTGCCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTTG
320 GAGAATGTGTTT-ATAGTGCCTAA-TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * * *
535107 TCACAATTGAGGCACGAACATACTCTTTACAAATATTGGT-GGAATTAAACCCTTT-TTACGAAA
383 TCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTACGAAA
* *
535170 CAAAATCATCAATATCGTGTATCCTTA
447 CCAAAGCATCAATATCGTGTATCCTTA
* * *** * *
535197 TGAGAAGACTAAGTTTATAGTGCCAAATCCTCAAAAATAATCAAGATTAGTATGACTATTCTTAT
1 TGAGAAGACTAAGTTTATGGTGCCAAATCCT-AAAAAGAATGGGGATTAGTATGACTATTCATGT
*
535262 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCG
65 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCG
535327 ACACCAAAGCATCAATGTCATGTATCCTAA
130 ACACCAAAGCATCAATGTCATGTATCCTAA
535357 GTTAAAAAAT
Statistics
Matches: 3274, Mismatches: 588, Indels: 179
0.81 0.15 0.04
Matches are distributed among these distances:
464 77 0.02
465 13 0.00
466 299 0.09
467 11 0.00
472 12 0.00
473 348 0.11
474 312 0.10
475 850 0.26
476 782 0.24
477 474 0.14
478 95 0.03
479 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
TGAGAAGACTAAGTTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTT
TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGA
CACCAAAGCATCAATGTCATGTATCCTAATGGAAGGAATGTGTTTTTGTTCCCAATCATGAAAAG
AATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
ATAAGGCAAAGAAAAGATTTCATGCAAAAGAAAATCATCAATATCATTTATCCAATAAGGAGAAT
GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
CAATATCGTGTATCCTTA
Found at i:535589 original size:291 final size:291
Alignment explanation
Indices: 535061--535646 Score: 827
Period size: 291 Copynumber: 2.0 Consensus size: 291
535051 GTTTGAACTG
*
535061 CCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTTGTCACAATTGAGGCACGAAC
1 CCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTTGTCACAATTAAGGCACGAAC
* * ** * * * * * *
535126 ATACTCTTTACAAATATTGGTGGAATTAAACCCTTTTTACGAAACAAAATCATCAATATCGTGTA
66 ATACACTTTACAAAAATTGGTGGAAGAAAACCCTTCTTACAAAACAAAAGCATCAACAACATGTA
* *
535191 TCCTTATGAGAAGACTAAGTTTATAGTGCCAAATCCTCAAAAATAATCAAGATTAGTATGACTAT
131 TCCTTATAAGAAGACTAAGTTTATAGTGCCAAATCCTCAAAAAGAATCAAGATTAGTATGACTAT
* * ** * *
535256 TCTTATTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTTGAAAGAAATGCTTTT
196 TCATATTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTT
535321 CTTGCGACACCAAAGCATCAATGTCATGTAT
261 CTTGCGACACCAAAGCATCAATGTCATGTAT
*
535352 CCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTTGTCACAATTAAGGCACGAAG
1 CCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTTGTCACAATTAAGGCACGAAC
* * * *
535417 TTAGACTTTACAAAAATTGGTGGAAGAAAAGCCTTACTTGCAAAATC-AAAGCATCAACAACATG
66 ATACACTTTACAAAAATTGGTGGAAGAAAACCCTT-CTTACAAAA-CAAAAGCATCAACAACATG
* * * ** ***
535481 TAGT-CTTATAAGAAGACTATGTTTATGGTGCCTAATCCT-TGAAAGAATGGGGATTAGTATGAC
129 TA-TCCTTATAAGAAGACTAAGTTTATAGTGCCAAATCCTCAAAAAGAATCAAGATTAGTATGAC
*
535544 TATTCATGTTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAACGGTTGAAAGAAATGCT
193 TATTCATATTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAACGGTTGAAAGAAATGCT
535609 TTTCTTGCGACACCAAAGCATCAATGTCATGTAT
258 TTTCTTGCGACACCAAAGCATCAATGTCATGTAT
535643 CCTA
1 CCTA
535647 TTGAATGGAA
Statistics
Matches: 259, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
291 205 0.79
292 52 0.20
293 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (291 bp):
CCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTTGTCACAATTAAGGCACGAAC
ATACACTTTACAAAAATTGGTGGAAGAAAACCCTTCTTACAAAACAAAAGCATCAACAACATGTA
TCCTTATAAGAAGACTAAGTTTATAGTGCCAAATCCTCAAAAAGAATCAAGATTAGTATGACTAT
TCATATTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTT
CTTGCGACACCAAAGCATCAATGTCATGTAT
Found at i:536272 original size:768 final size:764
Alignment explanation
Indices: 534629--536122 Score: 1970
Period size: 768 Copynumber: 1.9 Consensus size: 764
534619 ATCCATGTTT
* * * * *
534629 GTCACAATTGAGGCACGAAGTTAGACTTTACAAAAATT-GATGGGAGGAAAGCCTTAC-ATGCAA
1 GTCACAATTAACGCACGAAGTTAGACTTTACAAAAATTAG-TGGAAGAAAAGACTTACTA-GCAA
* * * * * * *
534692 AATCAAAGCATCAACATCATGTAGTTTTATG-AGAAGGCTATGTTTATGGTGCCTAAACCTTGAA
64 AATCAAAGCA-CAAAAACATGTA-ATCTAAGAAAAAGACTATGTTTATGGTGCCTAAACCTTGAA
**
534756 AGAATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGGCAAACACTGATTCTATCAA
127 AGAATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAA
*
534821 AAACGGTTGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTATTGAATG
192 AAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAATG
* * *
534886 GAATGTGTTTTTGGTTCCCAATCATGAAAGGAATGGAGACTGTTATGAGCATCAATGCTTGCCTT
257 GAATGTGTTTCTGGTTCCCAATCATGAAAGGAATGGACACTGTTATGAGAATCAATGCTTGCCTT
* * * *
534951 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAACAAAA
322 ATTTAAAGGATGAACTTTAATTTTAAGGAAAATACGGCAAAGAAAGGATTTCCATGCAAACAAAA
* *
535016 ATCGTCAATATCGTTTATCCTAAAAAGGAGAATGTGTTTGAACTGCCTAAGTTAAAAAATGAATG
387 ATCGTCAATATCATTTATCCTAAAAAGGAGAATGTGTTT-AACTGCCTAAGTCAAAAAATGAATG
* * * * * *
535081 AAGATCATTATTACAATCCATATTTGTCACAATTGAGGCACGAACATACTCTTTACAAATATTGG
451 AAGATAATTACTACAATCCATATTTGTCACAAATAAGGCACGAACATACACTTTACAAAAATTGG
* * *
535146 TGGAATTAAACCCTTTTTACGAAACAAAATCATCAATATCGTGTATCCTTATGAGAAGACTAAGT
516 TGGAATGAAACCCTTTTTACGAAACAAAAGCATCAATATCGAGTATCCTTATGAGAAGACTAAGT
* * **
535211 TTATAGTGCCAAATCCTCAAAAATAATCAAGATTAGTATGACTATTCTTATTTGTCTTATTTAAG
581 TTATAGTGCAAAATCCTCAAAAAGAATCAAGATTAGTATGACTATTCAGATTTGTCTTATTTAAG
* * *
535276 AGACAAACTTTGATTTTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
646 AGACAAACTTTGATTCTATCAAAAAGGGTTAAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
* * *
535341 ATGTCATGTATCCTAAGTTAAAAAATGAATGAAGATCATTATTACAATCCATATTT
711 ATGTCATGTATCCTAAGTTAAAAAATG-ATG-AGATCATGATTACAATCCATAATA
* * * *
535397 GTCACAATTAAGGCACGAAGTTAGACTTTACAAAAATTGGTGGAAGAAAAGCCTTACTTGCAAAA
1 GTCACAATTAACGCACGAAGTTAGACTTTACAAAAATTAGTGGAAGAAAAGACTTACTAGCAAAA
* * * * * *
535462 TCAAAGCATCAACAACATGTAGTCTTATAAGAAGACTATGTTTATGGTGCCTAATCCTTGAAAGA
66 TCAAAGCA-CAAAAACATGTAATCTAAGAAAAAGACTATGTTTATGGTGCCTAAACCTTGAAAGA
*
535527 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAA
130 ATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAA
*
535592 CGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAATGGAA
195 CGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAATGGAA
*
535657 TGTGTTTCTGGTTTCCAATCATGAAAGGAATGGACACTGTTATGAGAATCAATGCTTGCCTTATT
260 TGTGTTTCTGGTTCCCAATCATGAAAGGAATGGACACTGTTATGAGAATCAATGCTTGCCTTATT
* * *
535722 TAAAGGATGAACTTTAATTTTAAGGAAAATAACGTC-ATGAAAGGATTTCCAAT-CAAGA-GAAA
325 TAAAGGATGAACTTTAATTTTAAGGAAAAT-ACGGCAAAGAAAGGATTTCC-ATGCAA-ACAAAA
* * *
535784 AT-GATCAATTTCATTTATCCTAATAAGGAGAATGTGTTT-A-TGGTCTCTAA-TCAGAAAATGA
387 ATCG-TCAATATCATTTATCCTAAAAAGGAGAATGTGTTTAACT-G-C-CTAAGTCAAAAAATGA
* * * * * *
535845 ATGAAGATAATTACTAGAATCCATGTTTGTCACAAATAAGGCATGAACTTAGACTTTTCAAAAAT
448 ATGAAGATAATTACTACAATCCATATTTGTCACAAATAAGGCACGAACATACACTTTACAAAAAT
* * * * *
535910 TGGTGGGAA-GAAAGCCTTTCTTATGGAACCAAAGCATCAATATCGAGTATCGTTATGAGAAGAC
513 TGGT-GGAATGAAACCCTTT-TTACGAAACAAAAGCATCAATATCGAGTATCCTTATGAGAAGAC
* * ** * *
535974 TAAGTTTTTGGTGCAAAAT-CTTGAAAAGAAT-AGGGATTAGTATGACTATTCAGGTTTGTCTTA
576 TAAGTTTATAGTGCAAAATCCTCAAAAAGAATCA-AGATTAGTATGACTATTCAGATTTGTCTTA
* * *
536037 TTTAAGAGACAAACTTTGATTCTGTCAAAAAGGGTTAAAAGAAATGGTTTTCTTGCGACCCCAAA
640 TTTAAGAGACAAACTTTGATTCTATCAAAAAGGGTTAAAAGAAATGCTTTTCTTGCGACACCAAA
** *
536102 GGGTTAATGTCATGTATCCTA
705 GCATCAATGTCATGTATCCTA
536123 TTAAAGGAGT
Statistics
Matches: 641, Mismatches: 72, Indels: 27
0.87 0.10 0.04
Matches are distributed among these distances:
765 1 0.00
766 3 0.00
767 190 0.30
768 440 0.69
769 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (764 bp):
GTCACAATTAACGCACGAAGTTAGACTTTACAAAAATTAGTGGAAGAAAAGACTTACTAGCAAAA
TCAAAGCACAAAAACATGTAATCTAAGAAAAAGACTATGTTTATGGTGCCTAAACCTTGAAAGAA
TGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAAC
GGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAATGGAAT
GTGTTTCTGGTTCCCAATCATGAAAGGAATGGACACTGTTATGAGAATCAATGCTTGCCTTATTT
AAAGGATGAACTTTAATTTTAAGGAAAATACGGCAAAGAAAGGATTTCCATGCAAACAAAAATCG
TCAATATCATTTATCCTAAAAAGGAGAATGTGTTTAACTGCCTAAGTCAAAAAATGAATGAAGAT
AATTACTACAATCCATATTTGTCACAAATAAGGCACGAACATACACTTTACAAAAATTGGTGGAA
TGAAACCCTTTTTACGAAACAAAAGCATCAATATCGAGTATCCTTATGAGAAGACTAAGTTTATA
GTGCAAAATCCTCAAAAAGAATCAAGATTAGTATGACTATTCAGATTTGTCTTATTTAAGAGACA
AACTTTGATTCTATCAAAAAGGGTTAAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTC
ATGTATCCTAAGTTAAAAAATGATGAGATCATGATTACAATCCATAATA
Found at i:537260 original size:476 final size:476
Alignment explanation
Indices: 535362--537402 Score: 2421
Period size: 476 Copynumber: 4.3 Consensus size: 476
535352 CCTAAGTTAA
* * *
535362 AAAATGAATGAAGATCATTATTACAATCCATATTTGTCACAATTAAGGCACGAAGTTAGACTTTA
1 AAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTA
* ** * *
535427 CAAAAATTGGTGG-AAGAAAAGCCTTACTTGCAAAATCAAAGCATCAACAACATGTAGT-CTTAT
66 CAAAAATTGGTGGAAAG-AAAGCCTTTCTTGTGAAATCAAAGCATCAATATCATGTA-TCCTTAT
* * *
535490 AAGAAGACTATGTTTATGGTGCCTAATCCTTGAAAGAATGGGGATTAGTATGACTATTCATGTTT
129 GAGAAGACTAAGTTTATGGTGCCAAATCCTTGAAAGAATGGGGATTAGTATGACTATTCATGTTT
* *
535555 GTCTTATTTAAGAGAAAAACACTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
194 GTCTTATTTAAGAGACAAACACTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGAC
* *
535620 ACCAAAGCATCAATGTCATGTATCCTATTGAATGGAATGTGTTTCTGGTTTCCAATCATGAAAGG
259 ACCAAAGCATCAATGTCATGTATCCTATTGAATGGAATGTGTTTCTGGTTCCCAATCATGAAAAG
*
535685 AATGGACACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACTTTAATTTTAAGGAAA
324 AATGGACACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAA
* * * * * *
535750 ATAACGTC-ATGAAAGGATTTCCAATCAAGAGAAAATGATCAATTTCATTTATCCTAATAAGGAG
389 ATAACG-CAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATGTCATTTATCCTAATAAGGAG
*
535814 AATGTGTTTATGGT-CTCTAATCAG
453 AATGTGTTTATAGTGC-CTAATCAG
* * * * *
535838 AAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCACAAATAAGGCATGAACTTAGACTTTT
1 AAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTA
* * * * *
535903 CAAAAATTGGTGGGAAGAAAGCCTTTCTTATGGAACCAAAGCATCAATATCGA-GTATCGTTATG
66 CAAAAATTGGTGGAAAGAAAGCCTTTCTTGTGAAATCAAAGCATCAATATC-ATGTATCCTTATG
* * * *
535967 AGAAGACTAAGTTTTTGGTGCAAAAT-CTTGAAAAGAATAGGGATTAGTATGACTATTCAGGTTT
130 AGAAGACTAAGTTTATGGTGCCAAATCCTTG-AAAGAATGGGGATTAGTATGACTATTCATGTTT
** * * *
536031 GTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAAGGGTT-AAAAGAAATGGTTTTCTTGCGA
194 GTCTTATTTAAGAGACAAACACTGATTCTATCAAAAACGGTTGAAAA-AAATGCTTTTCTTGCGA
* ** * * * * * *
536095 CCCCAAAGGGTTAATGTCATGTATCCTATT-AAAGGAGTGTGTTTCTGGTTCCTAACCATTAAAA
258 CACCAAAGCATCAATGTCATGTATCCTATTGAATGGAATGTGTTTCTGGTTCCCAATCATGAAAA
* *** * * * *
536159 TAGCAGAGACTGTTACGAGAATTAATGCTTG-CTTCATTTAAGGGATGAACTTTGA-TTTATA-G
323 GAATGGACACTGTTATGAGAATCAATGCTTGCCTT-ATTTAAGGGATGAACTTTAATTTTA-AGG
** * * * * * * * *
536221 AAAATAGGGCAAAGAAACGGTTTACATGCTAAAGAAAATTAGCCATATGT--TTTATCCTAATAG
386 AAAATAACGCAAAGAAAAGATTTCCATTCAAAAGAAAATCA-TCA-ATGTCATTTATCCTAATAA
* * * *
536284 GGAAAATATGTTTATAGTGCCTATTCAC
449 GGAGAATGTGTTTATAGTGCCTAATCAG
* * * *
536312 AAAAAGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACGAAGTTAGACTTTA
1 AAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTA
* * ** * *
536377 CAAAAATTGATGGAAGGAAAG-CTTTACTTGCAAAATCAAAGCATCAACATCATGTAGCCTTATG
66 CAAAAATTGGTGGAAAGAAAGCCTTT-CTTGTGAAATCAAAGCATCAATATCATGTATCCTTATG
* * *
536441 AGAAGACTATGTTTATGGTGCCTAATCCTTGAAAGAATGGGGATTAGTATGACTATTCTTGTTTG
130 AGAAGACTAAGTTTATGGTGCCAAATCCTTGAAAGAATGGGGATTAGTATGACTATTCATGTTTG
***
536506 TCTTATTTAAGAGACAAACACTGATTCTATCAAAAACGGTTGATGGAAATGCTTTTCTTGCGACG
195 TCTTATTTAAGAGACAAACACTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGAC-
* * * *
536571 TCCAAAGCATCAATGTCATGAATCCTATTGAATGGAATGTGTTTTTGGTTCCCAATCATGAAAGG
259 ACCAAAGCATCAATGTCATGTATCCTATTGAATGGAATGTGTTTCTGGTTCCCAATCATGAAAAG
** * * *
536636 AATGGAGGCTGTTATGAGAATCAATACTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGAAAA
324 AATGGACACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAA
** * * * * *
536701 ATAGGGCAAAGAAAAGATTTCCATGT-AGATGAAAATCATCAATATCGTTTATACTCAA-AAGGA
389 ATAACGCAAAGAAAAGATTTCCAT-TCAAAAGAAAATCATCAATGTCATTTATCCT-AATAAGGA
* *
536764 GAATGTGTTTGTAATGCCTAATCAG
452 GAATGTGTTTATAGTGCCTAATCAG
* * * * * *
536789 AAAATGAATGAAGATCATTATTACAATCCATGTTTGCCATAATTAAGGCGCGGACATAGACTTTA
1 AAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTA
* * * * *
536854 CAAAAATTGATCGAAATAAACCCTTTCTTGTGAAA-CAAATGCATCAATATCGTGTATCCTTATG
66 CAAAAATTGGTGGAAAGAAAGCCTTTCTTGTGAAATCAAA-GCATCAATATCATGTATCCTTATG
* ** * * * *
536918 AGAATACTAAGTTTATAATGCCAAAT-CTCGAAAATAATTGGGATTAGTATGACTATTCTTGTTT
130 AGAAGACTAAGTTTATGGTGCCAAATCCTTG-AAAGAATGGGGATTAGTATGACTATTCATGTTT
** * *
536982 GTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAATGGTTGAAAAAAATGCTTTTCTTGCGAC
194 GTCTTATTTAAGAGACAAACACTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGAC
* ** * * *
537047 ACCAATGTGTCAATGTCATGTATCTTAATGGAA-GGAATGTGTTTTTGGTTCCCAATCATGAAAA
259 ACCAAAGCATCAATGTCATGTATCCT-ATTGAATGGAATGTGTTTCTGGTTCCCAATCATGAAAA
* *
537111 GAATGGACACTGCTATGAGAATCAATGCTTACCTTATTTAAGGGATGAACTTTAATTTTAAGGAA
323 GAATGGACACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAA
*
537176 AATAACGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATTAATGTCATTTATCCTAATAAGGAG
388 AATAACGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATGTCATTTATCCTAATAAGGAG
*
537241 AATGTGTTTATACTGCCTAATCAG
453 AATGTGTTTATAGTGCCTAATCAG
* * * * * *
537265 AAAATGAATGAAGATCATTACTAGAATCCATATTTATCACAAATGAGGCATGAACTTAGACTTTA
1 AAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTA
* * * * *
537330 CAAAAATTGGT-GAGAAGAAAGCCTTTCTTATGAAACCAAAGTATCAATATCAAGTATCGTTATG
66 CAAAAATTGGTGGA-AAGAAAGCCTTTCTTGTGAAATCAAAGCATCAATATCATGTATCCTTATG
537394 AGAAGACTA
130 AGAAGACTA
537403 TTCAGGTTTG
Statistics
Matches: 1310, Mismatches: 223, Indels: 64
0.82 0.14 0.04
Matches are distributed among these distances:
473 6 0.00
474 279 0.21
475 118 0.09
476 609 0.46
477 292 0.22
478 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTA
CAAAAATTGGTGGAAAGAAAGCCTTTCTTGTGAAATCAAAGCATCAATATCATGTATCCTTATGA
GAAGACTAAGTTTATGGTGCCAAATCCTTGAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
CTTATTTAAGAGACAAACACTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACAC
CAAAGCATCAATGTCATGTATCCTATTGAATGGAATGTGTTTCTGGTTCCCAATCATGAAAAGAA
TGGACACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAAT
AACGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATGTCATTTATCCTAATAAGGAGAAT
GTGTTTATAGTGCCTAATCAG
Found at i:539709 original size:13 final size:13
Alignment explanation
Indices: 539691--539716 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
539681 TACACAAAGT
539691 ATGTATCGATACA
1 ATGTATCGATACA
539704 ATGTATCGATACA
1 ATGTATCGATACA
539717 CCAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:540643 original size:21 final size:21
Alignment explanation
Indices: 540610--540650 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
540600 CTAAGTAAAA
540610 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
540631 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
540651 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:540715 original size:20 final size:19
Alignment explanation
Indices: 540690--540760 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
540680 ACCCTGAAAA
540690 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
540710 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
**
540729 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
540750 GTATCGATACA
1 GTATCGATACA
540761 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:540813 original size:53 final size:53
Alignment explanation
Indices: 540730--540866 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
540720 AGATTGCATA
*
540730 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCTAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
540784 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
540837 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
540867 TTGGTAGTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.82
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:540910 original size:10 final size:10
Alignment explanation
Indices: 540891--540921 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
540881 ATCTCATTTT
540891 TCACTGTTCA
1 TCACTGTTCA
*
540901 TCACTATTCA
1 TCACTGTTCA
540911 TCACTGTTCA
1 TCACTGTTCA
540921 T
1 T
540922 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:540943 original size:21 final size:22
Alignment explanation
Indices: 540909--540963 Score: 94
Period size: 21 Copynumber: 2.5 Consensus size: 22
540899 CATCACTATT
*
540909 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGAGA
540931 CATCACT-TTCATGTATCGAGA
1 CATCACTGTTCATGTATCGAGA
540952 CATCACTGTTCA
1 CATCACTGTTCA
540964 CACTGTTCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGAGA
Found at i:542789 original size:20 final size:19
Alignment explanation
Indices: 542747--542803 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
542737 ATTGGGCATA
**
542747 ATGTATCGATACAATTTTTC
1 ATGTATCGATAC-ATTTCCC
542767 ATGTATCGATACATTATCCC
1 ATGTATCGATACATT-TCCC
* *
542787 ATGCATCTATACATTTC
1 ATGTATCGATACATTTC
542804 ACTAAGGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 5 0.16
20 27 0.84
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (19 bp):
ATGTATCGATACATTTCCC
Found at i:545357 original size:13 final size:14
Alignment explanation
Indices: 545319--545357 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
545309 TAGTAACCCA
545319 TGTATCGATAC-AT
1 TGTATCGATACAAT
545332 TGTATCGATACAAT
1 TGTATCGATACAAT
545346 T-TATCGATACAA
1 TGTATCGATACAA
545358 AGAATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 22 0.88
14 3 0.12
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (14 bp):
TGTATCGATACAAT
Found at i:547022 original size:13 final size:13
Alignment explanation
Indices: 547004--547029 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
546994 CAATTTTTTG
547004 TGTATCGATACAT
1 TGTATCGATACAT
547017 TGTATCGATACAT
1 TGTATCGATACAT
547030 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:547094 original size:21 final size:21
Alignment explanation
Indices: 547068--547143 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
547058 CTGCCAAGAA
*
547068 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
547089 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
547109 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
547130 ATGTATCGATACAT
1 ATGTATCGATACAT
547144 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:547114 original size:20 final size:20
Alignment explanation
Indices: 547089--547161 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
547079 CATCTTTTTT
547089 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
547109 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
547130 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
547150 ATGTATCGATAC
1 ATGTATCGATAC
547162 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:547125 original size:41 final size:41
Alignment explanation
Indices: 547068--547161 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
547058 CTGCCAAGAA
*
547068 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
547109 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
547150 ATGTATCGATAC
1 ATGTATCGATAC
547162 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:549629 original size:13 final size:13
Alignment explanation
Indices: 549611--549635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
549601 ATAATCACCC
549611 TGTATCGATACAG
1 TGTATCGATACAG
549624 TGTATCGATACA
1 TGTATCGATACA
549636 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:549649 original size:20 final size:20
Alignment explanation
Indices: 549624--549700 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 20
549614 ATCGATACAG
549624 TGTATCGATACAAAGAAAAA
1 TGTATCGATACAAAGAAAAA
* *
549644 TGTATCGATACATAGAATTTCCAGA
1 TGTATCGATACAAAGAA-----AAA
*
549669 TGTATCGATACACAA-AAACA
1 TGTATCGATACA-AAGAAAAA
549689 TGTATCGATACA
1 TGTATCGATACA
549701 TTTTGGACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
20 30 0.64
25 16 0.34
26 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (20 bp):
TGTATCGATACAAAGAAAAA
Found at i:551735 original size:15 final size:15
Alignment explanation
Indices: 551715--551745 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
551705 ATTTCGTTTG
*
551715 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
551730 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
551745 G
1 G
551746 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:553578 original size:21 final size:21
Alignment explanation
Indices: 553549--553593 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
553539 AAGTTTTCAT
*
553549 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
553569 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
553591 TTT
1 TTT
553594 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:555828 original size:13 final size:13
Alignment explanation
Indices: 555810--555835 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
555800 CAATTTTTTG
555810 TGTATCGATACAT
1 TGTATCGATACAT
555823 TGTATCGATACAT
1 TGTATCGATACAT
555836 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:555900 original size:21 final size:21
Alignment explanation
Indices: 555874--555949 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
555864 CTGCCAAGAA
*
555874 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
555895 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
555915 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
555936 ATGTATCGATACAT
1 ATGTATCGATACAT
555950 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:555920 original size:20 final size:20
Alignment explanation
Indices: 555895--555967 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
555885 CATCTTTTTT
555895 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
555915 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
555936 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
555956 ATGTATCGATAC
1 ATGTATCGATAC
555968 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:555931 original size:41 final size:41
Alignment explanation
Indices: 555874--555967 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
555864 CTGCCAAGAA
*
555874 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
555915 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
555956 ATGTATCGATAC
1 ATGTATCGATAC
555968 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:563095 original size:13 final size:13
Alignment explanation
Indices: 563069--563111 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
563059 GATACATAAG
* *
563069 ACATTTTATTGAT
1 ACATTATATCGAT
*
563082 ACATTGTATCGAT
1 ACATTATATCGAT
*
563095 ATATTATATCGAT
1 ACATTATATCGAT
563108 ACAT
1 ACAT
563112 GATGAATTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (13 bp):
ACATTATATCGAT
Found at i:573244 original size:476 final size:474
Alignment explanation
Indices: 572117--575301 Score: 3544
Period size: 476 Copynumber: 6.7 Consensus size: 474
572107 GACGGTTATA
* * * * *
572117 AGAATCAATGCTTGCCCTATTTAAGGGATGAATTTTGATTTTCAGGAAAATA-GGCATAGAAACG
1 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
** * * *
572181 ATTTTCATTTAGTAA-AAAATTAACAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGC
66 ATTTTCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGC
* * * * * *
572245 CAAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTATCGCAATTGAGGTACGAACTT
130 CTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTT
* * * * ** *
572310 AGACTTTGCAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAGCCAAAACATCAATATCATGTAT
195 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGTAT
* * * *
572375 CCTTATGAGAAGACTAAGTTTATGGTTCGTAATCCTGAAAAGAAT-GGAGATTAGTATGACTATT
260 CCTTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAGTATGACTATT
* * * *
572439 CATGTTTATCTCATTAAAGAGACAAACTTTGATTCTATGAAAAAC-GTTGAAAGAAATGCTTTTC
324 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC
* *
572503 TTGCGACACCATTATG--TCAATGCCATGTATCCTAACGAAATGAATGTGTTTTTGGTTCCCAAT
389 TTGCGACACCA--AAGCATCAATGTCATGTATCCTAACGAAA-GAATGTG-TTTTGGTTCCCAAT
* * * * *
572566 CAAGAAATGAATAAAGGCTGTTATG
450 CATGAAAAGAATAGAGACTGTTACG
* * * * *
572591 AGAATCAATGCTTGCCTTACTTAGGGGATGAACTTTGATTTAAAGGATAGTAGGGCAAAGAAAAG
1 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * ** * * *
572656 ATTTTAATGTAAAAGAAAATCATCAATATTGTTTATCCTAAAGACGAGAATATGTTTATAATGCC
66 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
* * *
572721 TAATCACAAAGTAAATGAAGATCATTACTAGAATCTATGTTTGTCACAAATGAGGCACGAACTTA
131 TAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTA
* * * *
572786 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAGGAAAGCATTGCCTCAATATCGTGTATC
196 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGTATC
* *
572851 CTTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGTAAAGAATAGGGATTAGTATGACTATTTA
261 CTTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCA
* * *
572916 TGTTTGTCTTATTTGAGA-AGCAAACTCTGATTCTATCAAAAACGGCTGAAAGAAATGCTTTTCT
326 TGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * ** * * **
572980 TCCGACACCAAAGCATAAATGTCAGGTATCCTATTGAAAAGGATGTGTTTTGAGTTTCGGATCAT
390 TGCGACACCAAAGCATCAATGTCATGTATCCTAACG-AAAGAATGTGTTTTG-GTTCCCAATCAT
573045 GAAAAGAATAGAGACTGTTACG
453 GAAAAGAATAGAGACTGTTACG
* * * * * * * * *
573067 AAAATTAATGCTTGCCTTATTGAAAGAATAAACTTTGATTTTAAGGAAAATAGCGCATAGAAACG
1 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* ** * * * * *
573132 ATTTTCATGTAGTAGAAAATCATCGATATCATCTATCCTAATGAGGAAAATGTGTTTAGAGTG-C
66 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
* * * *
573196 TAAATCACAAAGTGAATGAAGTTCATTACTAGAATCCATGGTTGTCACAATTAAGGCACGAACCT
131 T-AATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTT
* * * * * ** *
573261 AGACTTTATAAAAATTGGTGGAAAGAAAGCTTTTCTTATGAGATCAAAACATCAATATCGTGCAT
195 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGTAT
* * * * * *
573326 GCTTA-TAAGAAGACTAGGTTTATAGTGCATAATCCT-AAAGATAAT-GGAGATTAGTATGATTA
260 CCTTATTAA-AAGACTAAGTTTATGGTGCCTAATCCTGAAA-AGAATAGG-GATTAGTATGACTA
* **
573388 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATGAAAAACTATTGAAAGAAATGCTTT
322 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTT
* ** *
573453 TCTGGC-ACCACC-ATTCTATCAATGTCATGTATCCTAACGAAAGAAATGTGTTTTTGGTTTCCA
387 TCTTGCGA-CACCAAAGC-ATCAATGTCATGTATCCTAACGAAAG-AATGTG-TTTTGGTTCCCA
* * *
573516 ATCATGAAATGAATAGAGGCTGTTATG
448 ATCATGAAAAGAATAGAGACTGTTACG
* * *
573543 GGAATCAATGCTTGCCTTATTTCAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
1 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * *
573608 ATTTTCATGCAAAAAAAAATCATCAATATCATTTATCTTAATGAGGAGAATATATTTATAGTGCC
66 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
* * * * *
573673 TAATCACAAAGTGAATGAAGGTGATTATTAGAATCCATGTTTGTCACAAATGAGGCACAAACTTA
131 TAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTA
* * * * * *
573738 GACTTAACAAAAATTGGTGGGAAAAAAACTTTTCTTATGAAACCATTGCTTCAATATCGTGTATC
196 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGTATC
* *
573803 CTTATTAGAAA-ACTATA-TTTATGGTGCCTAATCCT-AAAATGAATAGGGATTACTATGACTAC
261 CTTATTA-AAAGACTA-AGTTTATGGTGCCTAATCCTGAAAA-GAATAGGGATTAGTATGACTAT
* * * * * * *** *
573865 TAATGTTTATCTTATTTAAGAGACAAACGTTAATTCTATAAAAAACAGCCAAAAGAGATGCTTTT
323 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTT
* * * * * *
573930 TTTGTGACCCCAAAGCGTCAATTTCATGTATCCTAATGAAAGAAATGTGTTTCTGGTTCCCAATC
388 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAAG-AATGTGTTT-TGGTTCCCAATC
* *
573995 ATGATAAA-AATGGAGACTGTTA-T
451 ATGA-AAAGAATAGAGACTGTTACG
* *
574018 AGGAATCAATGCTTGCCTT-TTTAAGGGTTGAACTTTGAATTTTAAGTAAAATAGGGCAAAGAAA
1 A-GAATCAATGCTTGCCTTATTTAAGGGATGAACTTTG-ATTTTAAGGAAAATAGGGCAAAGAAA
* * *
574082 AGA-TTTCATTGCAAAAGAAAATCATCAATATCATTTATCCTACTAAGGAGAACATGTTTATAGT
64 AGATTTTCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGT
* * * *
574146 GCCTAATCACAAAGTGAATGAAGATCATGACTAGAATCCATGTTTGTCACAATTGAGGAATGAAT
128 GCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAC
* * * * *
574211 TTAGGCTTTACAAAAAATGGTGGGAAGAAAGCCTATCTTACGAAACCAATGCTTCAATATCGTGT
193 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGT
* ** * * *
574276 ATCCTTATTAGAAGACTAAGTTTATGGTTTCTAATCCTGAAAAGAAT-GAGGATTGGAATAACTA
258 ATCCTTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGACTA
* * * *
574340 TTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
322 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTT
* * * ** * *
574405 TCTTGCGACACTAAAGCCTCAATGTCAAGTATCCTAATAAAAAGAATGTATTTTTGGTTCCTAAT
387 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-CGAAAGAATGT-GTTTTGGTTCCCAAT
* *
574470 CCTGAAAAGAATAGAGACTATTACG
450 CATGAAAAGAATAGAGACTGTTACG
* * ** * * * *
574495 AGAATCGACGCTTGCCAAATTTAAAGGATGAAATTTGATTTTAAGGAAAAAAGGGCAAAGAAAAA
1 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * ** * * * * * *
574560 ATGTCCATGCAAAAG-AAATTGTCAATAACCTTTATCATGATATG-GG-GAATGTCTTTATTGTG
66 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT-A-ATGAGGAGAATATGTTTATAGTG
* * * * * *
574622 CCTAATCACAAAATGAATGAAGATCAATACTAGAATTCATGTTTGTCTC-ATTCGAGGTATGAAC
129 CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT-GAGGCACGAAC
* * * *
574686 TTAGACTTTACAAAAATTGGAGGAAAAAAAGCCTTTCTTATGAAACCAAAGCATCAATATCGTGT
193 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGT
* * * ** * * *
574751 A-CCATTTTTAGAAGACTAAGTTTATGGTGCTTAATGTTAAAAATAATGGGGATTAGTATGACTA
258 ATCC-TTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTA
* *
574815 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGATTGAAAGAAATGCTTT
322 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTT
* * * * * *
574880 TCTTGCAACACTATTA-CGTCAATGTCATGTATCCTAACGAAAGGAATGTGTTTTTAGTTCCTAA
387 TCTTGCGACACCA-AAGCATCAATGTCATGTATCCTAACGAAA-GAATGTG-TTTTGGTTCCCAA
* * *
574944 TCATGAAATGAATAGAGGCTGTTACA
449 TCATGAAAAGAATAGAGACTGTTACG
* * ** *
574970 AGAATCAATGCTCGCCTTATTTAAGGGATGAACTTTGATTTAAATAAAAATAGGGCAAAGAGAAG
1 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* ** *
575035 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGACAAGCATATGTTTATAGTGCC
66 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
* * * * *
575100 TAATCACAAAGTGAATAAAGATCATTACTAAAATCCATGTTTGTCATAAATGAGGCATGAACTTA
131 TAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTA
* * * * *
575165 GACTTCACAAAAATTGGTGGGAAGAAAGCCTTTCTTAGGAAACCATTGCCTCAATATCATGTATC
196 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGTATC
* * * *
575230 CTTATTAAAAAACTAAGTTTATGGTGCCTAATCTTGAAAATAATGGGGATTAGTATGACTATTCA
261 CTTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCA
*
575295 TATTTGT
326 TGTTTGT
575302 ATTTACAGAC
Statistics
Matches: 2256, Mismatches: 401, Indels: 106
0.82 0.15 0.04
Matches are distributed among these distances:
474 59 0.03
475 699 0.31
476 1440 0.64
477 57 0.03
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
TAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTA
GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCGTGTATC
CTTATTAAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
GCGACACCAAAGCATCAATGTCATGTATCCTAACGAAAGAATGTGTTTTGGTTCCCAATCATGAA
AAGAATAGAGACTGTTACG
Found at i:577380 original size:20 final size:21
Alignment explanation
Indices: 577334--577380 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
577324 AATTTCAAAT
577334 GCATGTATCGATACATTATGA
1 GCATGTATCGATACATTATGA
577355 --ATTGTATCGATACATTA-GA
1 GCA-TGTATCGATACATTATGA
577374 GCATGTA
1 GCATGTA
577381 AGTGCGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 3 0.13
20 19 0.83
21 1 0.04
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (21 bp):
GCATGTATCGATACATTATGA
Found at i:577799 original size:34 final size:35
Alignment explanation
Indices: 577736--577802 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
577726 CTAAGTGATT
577736 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
577772 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
577803 TGTTGTAGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:582578 original size:55 final size:55
Alignment explanation
Indices: 582507--582615 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
582497 CAATATCGTG
582507 TGTAAGGGATAAACTTTGATTCTATCAAAAACGGCTGAAGGAAAAGCCTTTCTTA
1 TGTAAGGGATAAACTTTGATTCTATCAAAAACGGCTGAAGGAAAAGCCTTTCTTA
* *
582562 TGTAAGGGATAAACTTTGATTCTATCAAAAATGGCTGAAGGAAAAGCTTTTCTT
1 TGTAAGGGATAAACTTTGATTCTATCAAAAACGGCTGAAGGAAAAGCCTTTCTT
582616 GCGACCTAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (55 bp):
TGTAAGGGATAAACTTTGATTCTATCAAAAACGGCTGAAGGAAAAGCCTTTCTTA
Found at i:583486 original size:475 final size:471
Alignment explanation
Indices: 580222--584179 Score: 3462
Period size: 475 Copynumber: 8.4 Consensus size: 471
580212 ACAGTATTAT
* * * *
580222 TTAAGAGATAAACTTTGATTCTATCAAAAACAGTTCAAAGAAATGCTTTTCTTGCGAAACC-AAA
1 TTAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCG--ACCTAAA
* * * * *
580286 GCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTT-CCAGATCATGAAAAGAGTGG
64 GCGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCA-ACCATGAAAAGAATGG
* ** ** * * *
580350 AGATTATTGTGAGAATTACTACTTGCCTTATTTAAAGGG-T-AAACTTTGATTTTAAGGAAAATA
128 AGACTATTAAGAGAAACAATGCTTGCCTTATTT-AAGGGATCAAA-TTTAATTTTAAGGAAAATA
* * *
580413 GGGCAAAGAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTACTGAGAAGAAT
191 GGGCAAAG-AAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
580478 ATGTTTATAGTGCCTAATCACAAAATGAAT----A-C----C-AGAATCCATGTTTGTCACAAAT
254 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGT--CAATT
** ** * * * * * * * *
580533 GAGGCACAAACATAGACTGT-CAGAATTTTGTAGGAAGAGAGCCTTTCTTACGAAACCAAAGCTT
317 GAGGCATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCAT
* * * * *
580597 CAATATCGTGTGTCCTTATTAGAAGACTAAGTTTATGATGCCTAATCTTGAAAAGAATGGGGATT
382 CAATATCGTGTATCCTTATTAGAAGACTAAGTTTAAGGTGTCTAATCTCGAAAAGAATGGGGATT
* * *
580662 AATATGACTATTTATGTTTGTCTTA
447 AGTATGACTATTCAAGTTTGTCTTA
* ** * * * *
580687 TTTAAGAGACAAACTTTGATTCTACCAAAAATGGTTGAAAGAAATGCTTTTCTTAC-ACATTAAA
1 -TTAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCGAC-CTAAA
* * * * * * * *
580751 GCGTCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTCTGGTTCCTAATCTTTAAAGGAATGGA
64 GCGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGGA
* * * * * * *
580816 GATTGTTACGAG-AATAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
129 GACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTTAATTTTAAGGAAAATAGGG
* * * * * *
580880 -ATAA-AAATGATTTTCATGCAGTAGAAAATAATCGATATCATTTATCCTAATGAGGAGAATGTG
194 CA-AAGAAAAGATTTCCATGCA-AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* ** * * * * * ** *
580943 TTTATAGTTCAAAACCACAAAGTGAATGAAGTTTATTACTAGAATCCACATTTGTCACAATTAAG
257 TTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGT--CAATTGAG
* * * * * ** * *
581008 GCACGAACTTAAACTTTATAAATATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAACATCAG
320 GCATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAA
* * * * * * * * *
581073 TATCGTGTATGCTTATGAGAAGACTAGGTTTATGGTG-CGTAACCTTGAAAAAAAAAGGAGATTA
385 TATCGTGTATCCTTATTAGAAGACTAAGTTTAAGGTGTC-TAATCTCG-AAAAGAATGGGGATTA
*
581137 GTATGACTATTCATGTTTGTCTTA
448 GTATGACTATTCAAGTTTGTCTTA
* * * * * * *
581161 TTTAAGAGACAAATTTTGATTCTATGAAAAACTA-TTGAAAGAAATGCTTTTCTTACGACATCAT
1 -TTAAGAGACAAACTTTGATTCTATCAAAAAC-AGCTGAAAGAAAAGCTTTTCTTGCGACCT-AA
* * * * * * *
581225 TGTGTCAATGTCATGAATCCTAACGAGAA-AAATGAGTTTTTGGTTCCCAACCATGAAATGAATA
63 AGCGTCAATGTCATGTATCCTAATGA-AAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATG
** * * * * *
581289 GAGGTTATTATGAGAATCAATGCTTGCCTTATTGAAGGGAT-AAACATTAATTTTATGGAAAATA
127 GAGACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAA-TTTAATTTTAAGGAAAATA
* ** * * *
581353 GGTCAAA-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATCCATCCTAACGAGGAAAATA
191 GGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * ** * *
581417 TGTTTATAGTGCCTAATCACAAAGTGAATGATGATCGTTACTAGAATCAATGTTTGTCACAAATG
255 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGT--CAATTG
* * * * ** *
581482 AAGGACA--AACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCTTTTCTTACGAAACCATTGCT
318 -AGG-CATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCA
* * * * * *
581545 TCAATATCGTGTATCCTTAATAGAAGACTATGTTTATGATGCCTAATC-CTGAAATGAATGGGGA
381 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTAAGGTGTCTAATCTC-GAAAAGAATGGGGA
*
581609 TTAGTATGACTATTCATA-TTTATCTTA
445 TTAGTATGACTATTCA-AGTTTGTCTTA
* * *
581636 TTTAAGAGACAAACTTTGATTCTATAAAAAACAGCCGAAAGAAATGCTTTTCTT-CTGACCCTAA
1 -TTAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGC-GA-CCTAA
* ** * * * *
581700 AGCGTCAAT-TCATGCATCCTGGTGAAAGGAATGTGTTTCTGGTTCCTAATCATGAAAAGAATGG
63 AGCGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGG
* * * * * * * * *
581764 AGAGTATTACGGGAATCAATGCTTGCCTTATTTAAGTGTTGAACTTTGAGTTTTAAGGAAAATAG
128 AGACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTT-AATTTTAAGGAAAATAG
* * * *
581829 GGCAAAGAAAATATTT-CATTGCAAAAGAAAATCATCAATATCATTTGTCCTACTGAGGAGAATA
192 GGCAAAGAAAAGATTTCCA-TGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * ** * *
581893 TGTTTATAGTGCCCAATCACAAAGTGAATGAAGATCACGACTAGAATCCATATTTCTCACAATTG
255 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGT--CAATTG
* * * *
581958 AGGCATGAATTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAATGCTTC
318 AGGCATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATC
* * *
582023 AATATCGTGTATCCTTATCAAAAGACTAAGTTTATGGTG-CTAAATC-CTGAAAAGAATGGGGAT
383 AATATCGTGTATCCTTATTAGAAGACTAAGTTTAAGGTGTCT-AATCTC-GAAAAGAATGGGGAT
* ** *
582086 TAGTATGATTATTCTTGTTTATCTTA
446 TAGTATGACTATTCAAGTTTGTCTTA
* * * * *
582112 TTTAAGAGACAAACATTGATTCTATCAAAAA-TGGTGGAAATAAAAGCTTTTCTTGTGACACTAA
1 -TTAAGAGACAAACTTTGATTCTATCAAAAACAGCT-GAAAGAAAAGCTTTTCTTGCGAC-CTAA
* * * * * * * *
582176 AGCATTAATGTCATGTATCCTAATGAAAAGAATGTGTTTCTAGTTCCTAATCC-TGAAAAGAATA
63 AGCGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAA-CCATGAAAAGAATG
* * * * * * ** * * * *
582240 GAAACTATTACGAGAACCGACGCTTGTCAAATTTAAAGGATGAAATTTGATTTTAAGGAAAAAAG
127 GAGACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTTAATTTTAAGGAAAATAG
* * * * * * *
582305 GGCAAAGAAAAAATGTCCATGCAAAAGAAATCATCAATAGCCTTTTTCATGATATG-GG-GAATG
192 GGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCT-A-ATGAGGAGAATG
** * * * * *
582368 TGTTTATTCTGCCGAATCACAAAATGAATGAAGATCAATGCTAGAATTCATGTTTGTCTCACTCG
255 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTG--TCAATTG
* * *
582433 AGGCATGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATC
318 AGGCATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATC
* * * * * *
582498 AATATCGTG--T--GTA--AG-GGA-TAAACTTT--GAT-TCT-A--TC--AAA-AACGGCTGA-
383 AATATCGTGTATCCTTATTAGAAGACT-AAGTTTAAGGTGTCTAATCTCGAAAAGAATGG-GGAT
*
582545 -AG---GA--A---AAGCCTT-TCTTA
446 TAGTATGACTATTCAAG-TTTGTCTTA
* * ** *
582562 TGTAAGGGATAAACTTTGATTCTATCAAAAATGGCTGAAGGAAAAGCTTTTCTTGCGACCTAAAG
1 T-TAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCGACCTAAAG
*
582627 CGTCAATGTCATGTGTCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGGAG
65 CGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGGAG
* * * ** * *
582692 ATTGTTAAAAGAAACAATGCTTGCCTTATTTAAGGGATGGACTTTTATTTTAAGGAAAATAGGGC
130 ACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTTAATTTTAAGGAAAATAGGGC
* *
582757 AAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATATATT
195 AAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * ** *
582822 TATAGTGCCTAATCATAAAGTGAATGAAGATCACGACTAGAATCCATGTTTGTCACAATAGAGGC
259 TATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGT--CAATTGAGGC
* * * *
582887 ATGAATTTAGGCTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTACAAAACCAATGCTTCAATA
322 ATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATA
* * * *
582952 TCATGTATCCTTATTAGAAGACTAAGTTTATA-GTGCCAAATC-CTGAAAAGATTGGGGATTAGT
387 TCGTGTATCCTTATTAGAAGACTAAGTTTA-AGGTGTCTAATCTC-GAAAAGAATGGGGATTAGT
* * *
583015 ATGACTATGCACGTTTATCTTA
450 ATGACTATTCAAGTTTGTCTTA
* ** *
583037 GTTAAGAGACAAACTTTTATTCTATCAAAAATTG-TGGAAAGAAAAGCTTTTCTTACGACACTAA
1 -TTAAGAGACAAACTTTGATTCTATCAAAAACAGCT-GAAAGAAAAGCTTTTCTTGCGAC-CTAA
** * * * *
583101 ATTGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTCTGGTACCTAATCC-TGAAAAGAATG
63 AGCGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAA-CCATGAAAAGAATG
** * * * ** ** * * *
583165 GAGACTATTGCGAGAACCGACGCTTATCAAATTTAAAGGATCAAATTTGATTTTAAGGAAAAAAG
127 GAGACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTTAATTTTAAGGAAAATAG
* * * * * *
583230 GGCAAAGAAAAAATGTCCATGCAAAAGAAATCATCAATAACATTTTTCATGATATG-GG-GAATG
192 GGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCT-A-ATGAGGAGAATG
* * * * *
583293 TGTTTATTGTGTCGAATCACAAAACGAATGAAGATCAATACTAGAATTCATGTTTGTCATATTCG
255 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCA-ATT-G
* * * ** *
583358 AGCCATTAATTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTATGAAACCAAAACATC
318 AGGCATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATC
* * * * *
583423 AATATCGTGAATCATTATTAGAAAACTAAGTTTAAGGTGTTTAATCTCGAAAAGAATGGGGATTG
383 AATATCGTGTATCCTTATTAGAAGACTAAGTTTAAGGTGTCTAATCTCGAAAAGAATGGGGATTA
583488 GTATGACTATTCAAGTTTGTCTTA
448 GTATGACTATTCAAGTTTGTCTTA
* * * * * ** *
583512 TTTAAGAGACAAACTTTGATTCAATCAAAAACAGTTAAAAGAAATGCTTTTCTTGCAACACCGAT
1 -TTAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCGAC-CTAAA
* * *
583577 GCGTCAATGTCATGTATCCTAATGAATA-GAATGCGTTTTTGGTTCCCAATCAAGAAAAGAATGG
64 GCGTCAATGTCATGTATCCTAATGAA-AGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGG
* * ** *
583641 AGACTATTATGAGAATCAATGCTTGCCTTATTTTTGGGA-CGAACA-TTAATTTTAAGTAAAATA
128 AGACTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATC-AA-ATTTAATTTTAAGGAAAATA
* *
583704 GGGCAAAGAAAAGATTTCCATGCAAAAAAAATCA-CAATATTATTTATCCTAATGAGGAAAATGT
191 GGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * * * *
583768 GTTTATAGTCCCTAATTACAAAATGAATGAAAATCATTCCAAGAATCCATTTTTGTCCCAATTGA
256 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGT--CAATTGA
* * * * *
583833 GGCATGAACTTAGATTTTACAAAAATTGGTGGGAACAAAGCCTATCTTACAAAACCAAAGTATCA
319 GGCATGAATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
* * * * * **
583898 ATATCGTGTATCCTTAATAGAAGACTAAGTTTATGGTGTCTAAACTTGAAAAGGACAGGGATTAG
384 ATATCGTGTATCCTTATTAGAAGACTAAGTTTAAGGTGTCTAATCTCGAAAAGAATGGGGATTAG
* *
583963 TATAACTATTCATGTTTGTCTTA
449 TATGACTATTCAAGTTTGTCTTA
* *
583986 TGCAAGAGATAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCGACCTAAAG
1 T-TAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCGACCTAAAG
* *
584051 CATCAATGTCATGTGTCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGGAG
65 CGTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGGAG
* ** * * * *
584116 ATTGCTACA-AGAAACAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTCA-GAAAACTAGG
130 ACTATTA-AGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTTAATTTTAAGGAAAA-TAGG
584179 G
193 G
584180 TCTAGAGAAA
Statistics
Matches: 2839, Mismatches: 530, Indels: 239
0.79 0.15 0.07
Matches are distributed among these distances:
448 6 0.00
449 133 0.05
450 191 0.07
451 4 0.00
452 1 0.00
453 1 0.00
454 2 0.00
455 2 0.00
456 2 0.00
457 7 0.00
458 3 0.00
459 5 0.00
460 6 0.00
461 1 0.00
462 70 0.02
463 10 0.00
464 42 0.01
465 72 0.03
466 58 0.02
467 3 0.00
468 7 0.00
469 1 0.00
470 2 0.00
471 3 0.00
472 44 0.02
473 189 0.07
474 415 0.15
475 765 0.27
476 696 0.25
477 95 0.03
478 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (471 bp):
TTAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAAAAGCTTTTCTTGCGACCTAAAGC
GTCAATGTCATGTATCCTAATGAAAGGAATGAGTTTTTGGTTCCCAACCATGAAAAGAATGGAGA
CTATTAAGAGAAACAATGCTTGCCTTATTTAAGGGATCAAATTTAATTTTAAGGAAAATAGGGCA
AAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCAATTGAGGCATGA
ATTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGT
GTATCCTTATTAGAAGACTAAGTTTAAGGTGTCTAATCTCGAAAAGAATGGGGATTAGTATGACT
ATTCAAGTTTGTCTTA
Found at i:584963 original size:13 final size:13
Alignment explanation
Indices: 584945--584969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
584935 ATCTTGCTTA
584945 GTATCGATACATT
1 GTATCGATACATT
584958 GTATCGATACAT
1 GTATCGATACAT
584970 AAACTGGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:585669 original size:36 final size:31
Alignment explanation
Indices: 585621--585716 Score: 106
Period size: 36 Copynumber: 3.0 Consensus size: 31
585611 AAGTGAATTT
585621 GAGGTTCTATCTTAGCCTTTGTAAAAGATAGAG
1 GAGGTTCTATCTTAGCCTTTG-AAAAGATAG-G
**
585654 AGAAAGGTTCTATCTTAGCCCGTGAAAAGATAGG
1 -G--AGGTTCTATCTTAGCCTTTGAAAAGATAGG
585688 GAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGG-TTCTATCTTAGCCTTTGAAAAGATAG
585717 TGTTGTAAGG
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
30 8 0.14
31 5 0.09
32 13 0.23
33 1 0.02
34 2 0.04
35 9 0.16
36 18 0.32
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (31 bp):
GAGGTTCTATCTTAGCCTTTGAAAAGATAGG
Found at i:586822 original size:49 final size:49
Alignment explanation
Indices: 586632--587226 Score: 755
Period size: 49 Copynumber: 12.5 Consensus size: 49
586622 AGATTCGACC
* *
586632 TGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* * *
586681 TGACTCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* *
586729 TGACTCAGCACATTGGCACC---A---TTAAGTCCAATATAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
*
586772 TGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* *
586821 TGACTCAGCACATTGGCACC---A---TTAAGTCCAATATAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
*
586864 TGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* * * *
586913 TGACTCAGCACATTGGCACCTTTACCATTAAGTCCAATATAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* * *
586962 TGAATCAGCATATTGGCACCTTTATCTTTGAGACCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* *
587011 TGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* *
587060 TGAATCAGCACATTGGCACC-TCACCTTTAAGT-CAAGTGTAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAA-TGTAGCTGGCCT
*
587108 TGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCTGGCCT
1 TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* *
587151 TGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCT
1 TGAATCAGCACATTGGCACC-TTT--ATCTTTAAGTCCAATGTAGCTGGCCT
* *
587203 TGAACCAGCACATTGACATCCTTT
1 TGAATCAGCACATTGGCA-CCTTT
587227 TTCTCATCTT
Statistics
Matches: 483, Mismatches: 39, Indels: 45
0.85 0.07 0.08
Matches are distributed among these distances:
43 114 0.24
44 4 0.01
46 4 0.01
47 4 0.01
48 88 0.18
49 227 0.47
52 40 0.08
53 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
Found at i:586836 original size:92 final size:92
Alignment explanation
Indices: 586659--587217 Score: 811
Period size: 92 Copynumber: 5.9 Consensus size: 92
586649 ACCTTCATCT
* * * * *
586659 TTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGC
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
586723 TGGCCTTGACTCAGCACATTGGCACCA
66 TGGCCTTGACTCAGCACATTGGCACCA
586750 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
586815 TGGCCTTGACTCAGCACATTGGCACCA
66 TGGCCTTGACTCAGCACATTGGCACCA
586842 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
586907 TGGCCTTGACTCAGCACATTGGCACCTTTACCA
66 TGGCCTTGACTCAGCACATTGG---C---ACCA
* *
586940 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTGAGACCAATGTAGC
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
587005 TGGCCTTGACTCAGCACATTGGCACCTTCA
66 TGGCCTTGACTCAGCACATTGGCA-C--CA
* * * *
587035 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGT-CAAGTG
1 ---TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAA-TG
* *
587098 TAGCTGGCCTTGAATCAGCACATTGGCACCT
62 TAGCTGGCCTTGACTCAGCACATTGGCACCA
*
587129 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGT
587194 AGCTGGCCTTGAAC-CAGCACATTG
63 AGCTGGCCTTG-ACTCAGCACATTG
587218 ACATCCTTTT
Statistics
Matches: 428, Mismatches: 20, Indels: 36
0.88 0.04 0.07
Matches are distributed among these distances:
91 79 0.18
92 135 0.32
93 2 0.00
94 1 0.00
95 37 0.09
96 8 0.02
97 37 0.09
98 129 0.30
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (92 bp):
TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
TGGCCTTGACTCAGCACATTGGCACCA
Found at i:587171 original size:43 final size:43
Alignment explanation
Indices: 587036--587173 Score: 197
Period size: 43 Copynumber: 3.1 Consensus size: 43
587026 GCACCTTCAT
587036 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
587084 CTTTAAGT-CAAGTGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAA-TGTAGCTGGCCTTGAATCAGCACATTGGCAC
* *
587127 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
587170 CTTT
1 CTTT
587174 TCCATCTTTA
Statistics
Matches: 86, Mismatches: 2, Indels: 9
0.89 0.02 0.09
Matches are distributed among these distances:
43 44 0.51
44 3 0.03
47 3 0.03
48 36 0.42
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:587205 original size:52 final size:55
Alignment explanation
Indices: 587127--587248 Score: 169
Period size: 52 Copynumber: 2.3 Consensus size: 55
587117 ACATTGGCAC
* * *
587127 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAACCAGCACATTGACATCCTTTTTCTCAT
* *
587179 CTTTAAGTTCAATGTAGCTGGCCTTGAACCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAACCAGCACATTGACATCCTTTTTCTCAT
*
587234 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
587249 CGTTGGTCGT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
52 37 0.63
53 2 0.03
54 5 0.08
55 15 0.25
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAACCAGCACATTGACATCCTTTTTCTCAT
Found at i:587338 original size:67 final size:68
Alignment explanation
Indices: 587230--587356 Score: 166
Period size: 67 Copynumber: 1.9 Consensus size: 68
587220 ATCCTTTTTC
** * * *
587230 TCATCTTTAAGCCCAATATCGTTGGTCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCACTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
587294 TCT
66 TCT
* * * *
587297 TCATCTTTAAGTCCAATATTACTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCACTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
587357 AAAACCCAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
67 46 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCACTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:588089 original size:33 final size:33
Alignment explanation
Indices: 588052--588118 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
588042 TTCAACGATT
588052 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
588085 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
588118 T
1 T
588119 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:588090 original size:13 final size:13
Alignment explanation
Indices: 588072--588096 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
588062 CATAAAATGT
588072 TGTATCGATACAA
1 TGTATCGATACAA
588085 TGTATCGATACA
1 TGTATCGATACA
588097 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:588177 original size:13 final size:13
Alignment explanation
Indices: 588159--588183 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
588149 ATTACTCAAA
588159 TGTATCGATACAT
1 TGTATCGATACAT
588172 TGTATCGATACA
1 TGTATCGATACA
588184 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:594004 original size:476 final size:473
Alignment explanation
Indices: 591921--595592 Score: 3906
Period size: 476 Copynumber: 7.7 Consensus size: 473
591911 ATGACTATTG
* * * * *
591921 AGGATTGGTATGACTATTGATGTTCATATTATTTAAGAGACAAACATTGATTCTATCAAAAACGG
1 AGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* * * *
591986 TTGAAAGAAATGCTTTT-TTGCAACACCAATGCGTCTATGTCTTGTATCCTAATGAAAGGAATGT
66 TTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* * * *
592050 GTTTTTTTGGTTCCTAATCATGAAAAGAATGGAGA-TAGTTACCAGGATCAACGTTTGCCTTATT
131 G--TTTTTGGTTCCT-ATCATGAAAAGAATGGAGACT-GTTACGAGAATCAATGCTTGCCTTATT
* * * **
592114 TAAGGGA-CAAACATTAATTTTAAGTAAAATAGGGCTAAA-AAATTATTT-CATGCAAAAGAAAA
192 TAAGGGATGAAA-TTTAATTTTAAGGAAAATAGGGC-AAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
592176 TCACCAATATCATTTATCCGAATGAGGAGAATATGTTTATAGTGCTTAATCA-AAAAGTGAATGA
255 TCATCAATATCATTTATCCTAAT-AGGAGAATATGTTTATAGTGCCTAATCACAAAA-TGAATGA
* * ** *
592240 AGATCATTACTAGAATCCATGTTTCTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGT
318 AGATCATTACTAGAATTCATGTCTGACACAAATGAGGCACGAACTTAGACTTTACAAAAATTGGT
** * * * * *
592305 GGGAAGAAAGACTTTCTTGTGAAAACAAAGCATCAATATCATGTATCCTTATGAGAACACTATGT
383 GGGAAGAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAAGT
*
592370 TTATGGTGCCTAATCTTGAAAAGAAT
448 TTATGGTGCCTAATCCTGAAAAGAAT
* * * * *
592396 GGAGATTAGTATGACTCTTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAACG
1 AG-GATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * * *
592461 GTTGAAAGAATTGCTTTTTTTACGACACCAATGCGTCAATGTCCTGTATCCTAACGAAAGGATTG
65 GTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* * * *
592526 TGTTTTTGGTTCCTAATCATGAAAAGAATGGAAACGGCTAAGAGAATCAATGCTTGCCTTATTTA
130 TGTTTTTGGTTCCT-ATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTA
* * ** *
592591 AGGGA-CAAACATTAATTTTAACTAAAATAGGGCCAAAAAAAAAAAAGATTTCCATGCAAAA-AA
194 AGGGATGAAA-TTTAATTTTAAGGAAAATAGGG-C----AAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
592654 AATCACCAATACCATTTATCCTAATAAGGAGAATGTGTTTAAAGTGCCTAATCATAAAGTGAATG
253 AATCATCAATATCATTTATCCTAAT-AGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * * * *
592719 AAGTTCATTACTAGAATCCATCTTTGTCACAATTGAGGCATGAACTTAGACTTTACAAAAATTAG
317 AAGATCATTACTAGAATTCATGTCTGACACAAATGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * *
592784 TAGGAAGAAAGCCTTTCTTACAAAACCATAGCATCAATATCTTGTATCCTTATTACAAGAATAAG
382 TGGGAAGAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAAG
* * *
592849 TTTATGGTGCCTAAACCTAAAAAGGAT
447 TTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * * *
592876 GGGGATTAGTATAACTATTCATGTTTGTCTTATGTAATAGAAAAACTTTGATTCTATCAAAAATG
1 -AGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * ** * * *
592941 GCTGAAAGAAAAGCTTTTCTTATGACCCCAAAGCATCAATGTCATGTGTCCTAATGAAAGGAATG
65 GTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* * *
593006 TGTTTTTGGTTCCCAATCATGAAAAAAATGGAGATTGTTACGAGAATCAATTG-TTGCCTTATTT
130 TGTTTTTGGTT-CCTATCATGAAAAGAATGGAGACTGTTACGAGAATCAA-TGCTTGCCTTATTT
* * ** *
593070 --GGGATGAACTTTGATTTTAACTAAATTAGGGCAAAG-AAAGATTTCCATGCAAAAGAAAATCA
193 AAGGGATGAAATTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
593132 TCAATATCATTTATCCTAATGAGGAGAATATGTTTGTAGTTCCAAATCACAAAGTGAATGAAGAT
258 TCAATATCATTTATCCTAAT-AGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * * * *
593197 GAATACTAG-ATTCCATGTTTGCCACAAATGAGGCATGAACTTATACTTTACAAAAATTGATAGG
322 CATTACTAGAATT-CATGTCTGACACAAATGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * * * *
593261 AAGAATGACTTTCTTACGAAACCAAAGCATCAAAATCAG-GTATCATTATGAGAAGACAAAGTTT
386 AAGAAAGACTTTCTTACGAAACCAAAGCATCAATATC-GTGTATCCTTATTAGAAGACTAAGTTT
593325 ATGGTGCCTAATCCTGAAAAGAAT
450 ATGGTGCCTAATCCTGAAAAGAAT
* * *
593349 AGGATTAGTGA-GACTATTCATGTTTATCTTATTTAAGAGATAAACTTTGATTCCATCAAAAATG
1 AGGATTAGT-ATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * * * * **
593413 GTGGAAAGAAAAGCTTTCCGTGCAACACTAAAGTGTCAATGTCATATATCCTAACAAAAGGAATG
65 GTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* * * * * * *
593478 AGTTTTGGGTTCCTAATCCTGTAAAGAATGGAGACTGTTACTAGAATCAATGCTTGTC-AAGTTT
130 TGTTTTTGGTTCCT-ATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTA-TTT
* * * * *
593542 AAGGGATGAAATTTGATTTCAAGGAAAAAAGGGCAAAGAAAAAATGTCCATGCAAAAGAAAATCA
193 AAGGGATGAAATTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * * * *
593607 TCAATAACCTTTATCGTGATATGGAAAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGAT
258 TCAATATCATTTATCCTAATA-GGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * *
593672 CAATACTAGAATTCATGTCTGACTC-ATTCGAGGCAAGAACCTT-GACTTTACAAAAATTGGTAG
322 CATTACTAGAATTCATGTCTGACACAAAT-GAGGCACGAA-CTTAGACTTTACAAAAATTGGTGG
* * * * *
593735 GAAGAAAGCCTTTCTTACGAAAACAAAGCATTAATATCGTGTATCATTTATTAGAAGACTAATTT
385 GAAGAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATC-CTTATTAGAAGACTAAGTT
*
593800 TATGGTTCCTAATCCTGAAAAGAAT
449 TATGGTGCCTAATCCTGAAAAGAAT
* * * ** *
593825 AGGATTAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAGCTACGATTCTATCAAAAACGA
1 AGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* * * *
593890 TTGAAAGAAATGCTTTTATTGCAACACCAAAGCGTCAATGTCATGTATCCTATTGAAAGGAAAGT
66 TTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* *
593955 TTTTTTGGTTCTCGT-TCATGAAAAGAATGGAGACTGGTACGAGAATCAATGCTTGCCTTATTTA
131 GTTTTTGGTTC-C-TATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTA
* * * * * *
594019 AGGGAT-AACTTTGA-TTTACATGAACATAGGGCAAAGAAATGATTTCTATGCAAAAGAAAATCA
194 AGGGATGAAATTTAATTTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
594082 GCAATATCATTTATCTTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAGTGAATGAAGAT
258 TCAATATCATTTATCCTAAT-AGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * *
594147 CATTACTACAA-TCAATTTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGTGGG
322 CATTACTAGAATTC-ATGTCTGACACAAATGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * ** * *
594211 AAG-AAGACTTTCTTACTAAACCAAAGCATCAATATCGTGCATCCTTAGGAGATGACAAAGTTTA
386 AAGAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAAGTTTA
* *
594275 TGGTGCCTAGTCCTGAAAAGAAA
451 TGGTGCCTAATCCTGAAAAGAAT
* * *
594298 AGGGATTAGTGTGACTATTCATGTTTATTTTATTTAAGGGACAAACTTTGATTCTATC-AAAACT
1 A-GGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-
* ** * * *
594362 GGTGGAAAGAAAAACTTTT-TGTGCGAC-CCTAAAGCATCAATGTCATATATCCTAATAAAAGGA
64 GGTTGAAAGAAATGCTTTTCT-TGCGACACC-AAAGCGTCAATGTCATGTATCCTAATGAAAGGA
* * * * **
594425 ATGAGTTTTTGGTTCCTAATC-TAGTAAAGAATGGAGACTGTTACGAGAATCAACGCTTGTCAAA
127 ATGTGTTTTTGGTTCCT-ATCAT-GAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTA
* * * * * *
594489 TTTAAGGGATGAAATTTCATTTCAAGGAAAAAAAGGCAAAGAAAAAATGTCCATGCAAAAGAAAA
190 TTTAAGGGATGAAATTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * *
594554 TCATCAATAACCTTTATCGTGATATGGAGAATATGTTTATAGTGCCTAATCACAAAATAAATGAA
255 TCATCAATATCATTTATCCTAATA-GGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * * *
594619 GATCAATT-CCAGAATTCATGTCTGTCTC-ATTCGAGGCAGGAACTTAGACTTTACAAAAATTAG
319 GATC-ATTACTAGAATTCATGTCTGACACAAAT-GAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * * *
594682 TGGGAAAAAAGCCTTTCTTACGAAACCAAAGAATGAATATCATGCATCATGTATTAGAGGACTAA
382 TGGGAAGAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT-TATTAGAAGACTAA
* *
594747 GTTTACGGTGCCTAATCCTAAAAAGAAT
446 GTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * * **
594775 AGGATTAGAATGGCTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAATCAA
1 AGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* * * * * * * *
594840 TTGAAAGAGATGTTTTTATTGCGACACCAAAGCATCAATATCATGTATCCCATTGAAAGGAATGC
66 TTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
* * * *
594905 GTTTTTCGTTCCCGATCATGAAAAGAATAGAGAAC-GGTACGAGAATCAATGCTTGCCTTATTTA
131 GTTTTTGGTT-CCTATCATGAAAAGAATGGAG-ACTGTTACGAGAATCAATGCTTGCCTTATTTA
* * * * * * * **
594969 AAGGATGAACTTTCATTTAAAGAAAAATAAGG-AAGAGAAATGATTTTTATGCAAAAGAAAATCA
194 AGGGATGAAATTTAATTTTAAGGAAAATAGGGCAA-AGAAAAGATTTCCATGCAAAAGAAAATCA
* * *
595033 TCAATAGCATTTATCCTAATGAGGAGAATATATTTATAGTGCCTAATCACAAAGTGAATGAAGAT
258 TCAATATCATTTATCCTAAT-AGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * *
595098 CAGTACTACAA-TCAATGT-TTATCACAAATGGGGCACGAACTTAGACTATACAAAAATTGGTGG
322 CATTACTAGAATTC-ATGTCTGA-CACAAATGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
595161 GAAAAAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA-TACGAAGACTAAGT
385 G-AAGAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTA-GAAGACTAAGT
595225 TTATGGTGCCTAATCCTGAAAAGAAT
448 TTATGGTGCCTAATCCTGAAAAGAAT
* * * *
595251 GGGGATTAGTATGACTATTCATATTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAAG
1 -AGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* *
595316 GTTGAAAGCAATGCTTTTCTTGCGACACCAATGCGTCAATGTCATGTATCCTAATGAAAGGAATG
65 GTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATG
* * * * * *
595381 TGTCTTTGGTTCCTAATCAAGAAAAGAATGGAAACTGTTATGAGAATCAATGCTTGTCTTTTTTA
130 TGTTTTTGGTTCCT-ATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTA
* *
595446 AGGGAT-AAACATTAATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
194 AGGGATGAAA-TTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * *
595510 TCAATATCATTTATCCTAA-AGAGAAAAATGTGTTTATAGTGCCTAATTACTAAATAAATGAAGA
258 TCAATATCATTTATCCTAATAG-G-AGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGA
*
595574 TCATTACTAGAATCCATGT
321 TCATTACTAGAATTCATGT
595593 TTGTCCTAGA
Statistics
Matches: 2664, Mismatches: 457, Indels: 150
0.81 0.14 0.05
Matches are distributed among these distances:
471 5 0.00
472 172 0.06
473 237 0.09
474 236 0.09
475 544 0.20
476 661 0.25
477 404 0.15
478 27 0.01
479 5 0.00
480 355 0.13
481 18 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (473 bp):
AGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
TTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGT
GTTTTTGGTTCCTATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
GGATGAAATTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
ATATCATTTATCCTAATAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
ACTAGAATTCATGTCTGACACAAATGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
AGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTG
CCTAATCCTGAAAAGAAT
Found at i:594495 original size:950 final size:953
Alignment explanation
Indices: 591921--595597 Score: 4435
Period size: 950 Copynumber: 3.9 Consensus size: 953
591911 ATGACTATTG
* * ** *
591921 AGGATTGGTATGACTATTGATGTTCATATTATTTAAGAGACAAAC-ATTGATTCTATCAAAAACG
1 AGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTA-TGATTCTATCAAAAACG
* * * * *
591985 GTTGAAAGAAATGCTTTT-TTGCAACACCAATGCGTCTATGTCTTGTATCCTAATGAAAGGAATG
65 ATTGAAAGAAATGCTTTTATTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
** * * * * *
592049 TGTTTTTTTGGTTCCTAATCATGAAAAGAATGGAGA-TAGTTACCAGGATCAACGTTTGCCTTAT
130 TG--TTTTTGGTTCCCGATCATGAAAAGAATGGAGACT-GGTACGAGAATCAATGCTTGCCTTAT
** * * * *
592113 TTAAGGGACAAACATTAATTTTAA-GTAAAATAGGGCTAAA-AAATTATTTC-ATGCAAAAGAAA
192 TTAAGGGATGAACTTTGATTTTAATGAAAAATAGGGC-AAAGAAATGATTTCTATGCAAAAGAAA
* * * *
592175 ATCACCAATATCATTTATCCGAATGAGGAGAATATGTTTATAGTGCTTAATCAAAAAGTGAATGA
256 ATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGA
* * *
592240 AGATCATTACTAGAATCCATGTTTCTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGT
321 AGATCATTACTACAATCAATGTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGT
** * * * * *
592305 GGGAAGAAAGACTTTCTTGTGAAAACAAAGCATCAATATCATGTATCCTTATGAGAACACTATGT
386 GGGAAG-AAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGT
* * * * *
592370 TTATGGTGCCTAATCTTGAAAAG-AATGGAGATTAGTATGACTCTTCATGTTTGTCTTATTTAAA
450 TTATGGTGCCTAATCCTGAAAAGAAAAGG-GATTAGTATGACTATTCATGTTTATCTTATTTAAG
* * * ** * * *
592434 AGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAATTGCTTTTTTTACGACACCAATGCGTCA
514 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTGTGCGACACCAAAGCGTCA
* * * * * *
592499 ATGTCCTGTATCCTAACGAAAGGATTGTGTTTTTGGTTCCTAATC-ATGAAAAGAATGGAAACGG
579 ATGTCATATATCCTAACAAAAGGAATGAGTTTTTGGTTCCTAATCTA-GAAAAGAATGGAAACTG
* * * ** * * ** *
592563 CTAAGAGAATCAATGCTTGCCTTATTTAAGGGA-CAAACATTAATTTTAACTAAAATAGGGCCAA
643 TTACGAGAATCAATGCTTGTCAAATTTAAGGGATGAAACATTAATTTCAAGGAAAAAAGGG-C--
* * * * *
592627 AAAAAAAAAAGATTTCCATGCAAAA-AAAATCACCAAT-ACCATTTATCCTAATAAGGAGAATGT
705 -AAAGAAAAA-ATGTCCATGCAAAAGAAAATCATCAATAACC-TTTATCCTGATAAGGAAAATGT
* * * * * * * * *
592690 GTTTAAAGTGCCTAATCATAAAGTGAATGAAGTTCATTACTAGAATCCATCTTTGTCACAATT-G
767 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCAATACTAGAATCCATGTCTGTCTC-ATTCG
* *
592754 AGGCATGAACTTAGACTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTTAC-AAAACCATAGCAT
831 AGGCAAGAACTTAGACTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTTACGAAAA-CAAAGCAT
* * * * * *
592818 CAATATCTTGTATC-CTTATTACAAGAATAAGTTTATGGTGCCTAAACCTAAAAAGGAT
895 CAATATCATGTATCATTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * * *
592876 GGGGATTAGTATAACTATTCATGTTTGTCTTATGTAATAGAAAAACTTTGATTCTATCAAAAATG
1 -AGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACG
** * * *** * *
592941 GCTGAAAGAAAAGCTTTTCTTATGACCCCAAAGCATCAATGTCATGTGTCCTAATGAAAGGAATG
65 ATTGAAAGAAATGCTTTTATTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
* * * *
593006 TGTTTTTGGTTCCCAATCATGAAAAAAATGGAGATTGTTACGAGAATCAATTG-TTGCCTTATTT
130 TGTTTTTGGTTCCCGATCATGAAAAGAATGGAGACTGGTACGAGAATCAA-TGCTTGCCTTATTT
* *
593070 --GGGATGAACTTTGATTTTAACT--AAATTAGGGCAAAGAAA-GATTTCCATGCAAAAGAAAAT
194 AAGGGATGAACTTTGATTTTAA-TGAAAAATAGGGCAAAGAAATGATTTCTATGCAAAAGAAAAT
* * *
593130 CATCAATATCATTTATCCTAATGAGGAGAATATGTTTGTAGTTCCAAATCACAAAGTGAATGAAG
258 CATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAG
* * * * * * * * * * *
593195 ATGAATACTAGATTCCATGTTTGCCACAAATGAGGCATGAACTTATACTTTACAAAAATTGATAG
323 ATCATTACTACAATCAATGTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGTGG
* *
593260 GAAGAATGACTTTCTTACGAAACCAAAGCATCAAAATCAG-GTATCATTATGAGAAGACAAAGTT
388 GAAGAA-GACTTTCTTACGAAACCAAAGCATCAATATC-GTGTATCCTTATGAGAAGACAAAGTT
*
593324 TATGGTGCCTAATCCTGAAAAGAATA-GGATTAGTGA-GACTATTCATGTTTATCTTATTTAAGA
451 TATGGTGCCTAATCCTGAAAAGAAAAGGGATTAGT-ATGACTATTCATGTTTATCTTATTTAAGA
* * ** * * *
593387 GATAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTCCGTGCAACACTAAAGTGTCAA
515 GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTGTGCGACACCAAAGCGTCAA
* * *
593452 TGTCATATATCCTAACAAAAGGAATGAGTTTTGGGTTCCTAATCCT-GTAAAGAATGGAGACTGT
580 TGTCATATATCCTAACAAAAGGAATGAGTTTTTGGTTCCTAAT-CTAGAAAAGAATGGAAACTGT
* * * *
593516 TACTAGAATCAATGCTTGTCAAGTTTAAGGGATGAAA-TTTGATTTCAAGGAAAAAAGGGCAAAG
644 TACGAGAATCAATGCTTGTCAAATTTAAGGGATGAAACATTAATTTCAAGGAAAAAAGGGCAAAG
* *
593580 AAAAAATGTCCATGCAAAAGAAAATCATCAATAACCTTTATCGTGATATGGAAAATGTGTTTATA
709 AAAAAATGTCCATGCAAAAGAAAATCATCAATAACCTTTATCCTGATAAGGAAAATGTGTTTATA
** * *
593645 GTGCCTAATCACAAAACGAATGAAGATCAATACTAGAATTCATGTCTGACTCATTCGAGGCAAGA
774 GTGCCTAATCACAAAATAAATGAAGATCAATACTAGAATCCATGTCTGTCTCATTCGAGGCAAGA
* * *
593710 ACCTT-GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAAACAAAGCATTAATATCG
839 A-CTTAGACTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTTACGAAAACAAAGCATCAATATCA
* * *
593774 TGTATCATTTATTAGAAGACTAATTTTATGGTTCCTAATCCTGAAAAGAAT
903 TGTATCATTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
* * *
593825 AGGATTAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAGCTACGATTCTATCAAAAACGA
1 AGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGA
* * *
593890 TTGAAAGAAATGCTTTTATTGCAACACCAAAGCGTCAATGTCATGTATCCTATTGAAAGGAAAGT
66 TTGAAAGAAATGCTTTTATTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGT
* * *
593955 TTTTTTGGTTCTCGTTCATGAAAAGAATGGAGACTGGTACGAGAATCAATGCTTGCCTTATTTAA
131 GTTTTTGGTTCCCGATCATGAAAAGAATGGAGACTGGTACGAGAATCAATGCTTGCCTTATTTAA
*
594020 GGGAT-AACTTTGA-TTTACATG-AACATAGGGCAAAGAAATGATTTCTATGCAAAAGAAAATCA
196 GGGATGAACTTTGATTTTA-ATGAAAAATAGGGCAAAGAAATGATTTCTATGCAAAAGAAAATCA
* * *
594082 GCAATATCATTTATCTTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAGTGAATGAAGAT
260 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGAT
*
594147 CATTACTACAATCAATTTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGTGGGA
325 CATTACTACAATCAATGTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGTGGGA
* * * *
594212 AGAAGACTTTCTTACTAAACCAAAGCATCAATATCGTGCATCCTTAGGAGATGACAAAGTTTATG
390 AGAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATG
* * * *
594277 GTGCCTAGTCCTGAAAAGAAAAGGGATTAGTGTGACTATTCATGTTTATTTTATTTAAGGGACAA
455 GTGCCTAATCCTGAAAAGAAAAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAA
* * *
594342 ACTTTGATTCTATCAAAACTGGTGGAAAGAAAAACTTTTTGTGCGAC-CCTAAAGCATCAATGTC
520 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTGTGCGACACC-AAAGCGTCAATGTC
* * *
594406 ATATATCCTAATAAAAGGAATGAGTTTTTGGTTCCTAATCTAGTAAAGAATGGAGACTGTTACGA
584 ATATATCCTAACAAAAGGAATGAGTTTTTGGTTCCTAATCTAGAAAAGAATGGAAACTGTTACGA
* * * *
594471 GAATCAACGCTTGTCAAATTTAAGGGATGAAA-TTTCATTTCAAGGAAAAAAAGGCAAAGAAAAA
649 GAATCAATGCTTGTCAAATTTAAGGGATGAAACATTAATTTCAAGGAAAAAAGGGCAAAGAAAAA
* * * *
594535 ATGTCCATGCAAAAGAAAATCATCAATAACCTTTATCGTGATATGGAGAATATGTTTATAGTGCC
714 ATGTCCATGCAAAAGAAAATCATCAATAACCTTTATCCTGATAAGGAAAATGTGTTTATAGTGCC
* * * *
594600 TAATCACAAAATAAATGAAGATCAATTCCAGAATTCATGTCTGTCTCATTCGAGGCAGGAACTTA
779 TAATCACAAAATAAATGAAGATCAATACTAGAATCCATGTCTGTCTCATTCGAGGCAAGAACTTA
* * * * * *
594665 GACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGAATGAATATCATGCATC
844 GACTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTTACGAAAACAAAGCATCAATATCATGTATC
* * *
594730 ATGTATTAGAGGACTAAGTTTACGGTGCCTAATCCTAAAAAGAAT
909 ATTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * * *
594775 AGGATTAGAATGGCTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAATCAA
1 AGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGA
* * * * * * *
594840 TTGAAAGAGATGTTTTTATTGCGACACCAAAGCATCAATATCATGTATCCCATTGAAAGGAATGC
66 TTGAAAGAAATGCTTTTATTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGT
* *
594905 GTTTTTCGTTCCCGATCATGAAAAGAATAGAGAAC-GGTACGAGAATCAATGCTTGCCTTATTTA
131 GTTTTTGGTTCCCGATCATGAAAAGAATGGAG-ACTGGTACGAGAATCAATGCTTGCCTTATTTA
* * * * *
594969 AAGGATGAACTTTCA-TTTAAAGAAAAATAAGG-AAGAGAAATGATTTTTATGCAAAAGAAAATC
195 AGGGATGAACTTTGATTTTAATGAAAAATAGGGCAA-AGAAATGATTTCTATGCAAAAGAAAATC
* *
595032 ATCAATAGCATTTATCCTAATGAGGAGAATATATTTATAGTGCCTAATCACAAAGTGAATGAAGA
259 ATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGA
* * *
595097 TCAGTACTACAATCAATGTTTATCACAAATGGGGCACGAACTTAGACTATACAAAAATTGGTGGG
324 TCATTACTACAATCAATGTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGTGGG
* *
595162 AAAAAAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT-ACGAAGACTAAGTT
389 --AAGAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGA-GAAGACAAAGTT
** *
595226 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATATTTATCTTATTTAAGAG
451 TATGGTGCCTAATCCTGAAAAGAAAAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAG
* * * * * *
595291 GCAAACTTTGATTCTATCAAAAAAGGTTGAAAGCAATGCTTTTCT-TGCGACACCAATGCGTCAA
516 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TGTGCGACACCAAAGCGTCAA
* ** * * *
595355 TGTCATGTATCCTAATGAAAGGAATGTGTCTTTGGTTCCTAATCAAGAAAAGAATGGAAACTGTT
580 TGTCATATATCCTAACAAAAGGAATGAGTTTTTGGTTCCTAATCTAGAAAAGAATGGAAACTGTT
* *** * * *
595420 ATGAGAATCAATGCTTGTCTTTTTTAAGGGAT-AAACATTAATTTTAAGTAAAATAGGGCAAAGA
645 ACGAGAATCAATGCTTGTCAAATTTAAGGGATGAAACATTAATTTCAAGGAAAAAAGGGCAAAGA
* * * *
595484 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-A-AAGAGAAAAATGTGTTTAT
710 AAAAATGTCCATGCAAAAGAAAATCATCAATAACCTTTATCCTGATAAG-G-AAAATGTGTTTAT
* * * *
595547 AGTGCCTAATTACTAAATAAATGAAGATCATTACTAGAATCCATGTTTGTC
773 AGTGCCTAATCACAAAATAAATGAAGATCAATACTAGAATCCATGTCTGTC
595598 CTAGATAGTA
Statistics
Matches: 2350, Mismatches: 326, Indels: 93
0.85 0.12 0.03
Matches are distributed among these distances:
947 18 0.01
948 317 0.13
949 149 0.06
950 745 0.32
951 171 0.07
952 190 0.08
953 595 0.25
954 4 0.00
955 53 0.02
956 69 0.03
957 39 0.02
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (953 bp):
AGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGA
TTGAAAGAAATGCTTTTATTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGT
GTTTTTGGTTCCCGATCATGAAAAGAATGGAGACTGGTACGAGAATCAATGCTTGCCTTATTTAA
GGGATGAACTTTGATTTTAATGAAAAATAGGGCAAAGAAATGATTTCTATGCAAAAGAAAATCAT
CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC
ATTACTACAATCAATGTTTGTCACAAATGAGGCACGAACTTAGACTATACAAAAATTGGTGGGAA
GAAGACTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGG
TGCCTAATCCTGAAAAGAAAAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAA
CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTGTGCGACACCAAAGCGTCAATGTCAT
ATATCCTAACAAAAGGAATGAGTTTTTGGTTCCTAATCTAGAAAAGAATGGAAACTGTTACGAGA
ATCAATGCTTGTCAAATTTAAGGGATGAAACATTAATTTCAAGGAAAAAAGGGCAAAGAAAAAAT
GTCCATGCAAAAGAAAATCATCAATAACCTTTATCCTGATAAGGAAAATGTGTTTATAGTGCCTA
ATCACAAAATAAATGAAGATCAATACTAGAATCCATGTCTGTCTCATTCGAGGCAAGAACTTAGA
CTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTTACGAAAACAAAGCATCAATATCATGTATCAT
TTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT
Found at i:595897 original size:346 final size:346
Alignment explanation
Indices: 595257--596290 Score: 1653
Period size: 346 Copynumber: 3.0 Consensus size: 346
595247 GAATGGGGAT
* * * * * *
595257 TAGTATGACTATTCATATTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAA-GGTTGA
1 TAGTATAACTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTTTAT-AAAAAATGGTTGA
* * * * * *
595321 AAGCAATGCTTTTCTTGCGACACCAATGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTCT
65 AAGAAATGCTTTTCTTGTGACACCAATGCATCAATATCATGTATCCTTATGAAAGGAATGTGTTT
* * * * * *
595386 TTGGTTCCTAATCAAGAAAAGAATGGAAACTG-TTATGAGAATCAATGCTTGT-CTTTTTTAAGG
130 TTGGTTCCCAATCATGAAATGAATGGAGACTGCTT-CGAGAATCAATGCTT-TCCTTATTTAAGG
**
595449 GATAAACATTAATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
193 GACGAACATTAATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* *
595514 TATCATTTATCCTAAAGAGAAAAATGTGTTTATAGTGCCTAATTACTAAATAAATGAAGATCATT
258 TATCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACTAAATAAATGAAGATCATT
595579 ACTAGAATCCATGTTTGTCCTAGA
323 ACTAGAATCCATGTTTGTCCTAGA
* *
595603 TAGTATAACTATTCATGTTTGTCTTATTTAAGAGACTATCTCTGATTTTATAAAAAATGGTTGAA
1 TAGTATAACTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTTTATAAAAAATGGTTGAA
* *
595668 AGAAATGCTTTTCTTGTGACACGAATGCATCAATATCATGTATCCTTACGAAAGGAATGTGTTTT
66 AGAAATGCTTTTCTTGTGACACCAATGCATCAATATCATGTATCCTTATGAAAGGAATGTGTTTT
595733 TGGTTCCCAATCATGAAATGAATGGAGACTGCTTCGAGAATCAATGCTTTCCTTATTTAAGGGAC
131 TGGTTCCCAATCATGAAATGAATGGAGACTGCTTCGAGAATCAATGCTTTCCTTATTTAAGGGAC
595798 GAACATTAATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
196 GAACATTAATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
595863 CATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACTAAATAAATGAAGATCATTACT
261 CATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACTAAATAAATGAAGATCATTACT
595928 AGAATCCATGTTTGTCCTAGA
326 AGAATCCATGTTTGTCCTAGA
*
595949 TAGTATAACTATTCATGTTTGTTTTATTTAAGAGACTAACTTTGATTTTATAAAAAATGGTTGAA
1 TAGTATAACTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTTTATAAAAAATGGTTGAA
*
596014 AGAAACGCTTTTCTTGTGACACCAATGCATCAATATCATGTATCCTTATGAAAGGAATGTGTTTT
66 AGAAATGCTTTTCTTGTGACACCAATGCATCAATATCATGTATCCTTATGAAAGGAATGTGTTTT
* * * *
596079 TGTTTCCCAACCATGAAATGAATGGAGACTACTTCGAGAATCAATGCTTTCCTTATTTAAAGGAC
131 TGGTTCCCAATCATGAAATGAATGGAGACTGCTTCGAGAATCAATGCTTTCCTTATTTAAGGGAC
* * *
596144 GAACATTAATTTTAAGTAAAATAGAG-AAAAACAAAGATTTCCATGCAAAAGAAAATCACCAATA
196 GAACATTAATTTTAAGTAAAATAGGGCAAAGA-AAAGATTTCCATGCAAAAGAAAATCATCAATA
* *
596208 TCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
260 TCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACTAAATAAATGAAGATCATTAC
* *
596273 TTGAATCGATGTTTGTCC
325 TAGAATCCATGTTTGTCC
596291 CAATTAAGGC
Statistics
Matches: 641, Mismatches: 43, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
345 11 0.02
346 628 0.98
347 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (346 bp):
TAGTATAACTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTTTATAAAAAATGGTTGAA
AGAAATGCTTTTCTTGTGACACCAATGCATCAATATCATGTATCCTTATGAAAGGAATGTGTTTT
TGGTTCCCAATCATGAAATGAATGGAGACTGCTTCGAGAATCAATGCTTTCCTTATTTAAGGGAC
GAACATTAATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
CATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACTAAATAAATGAAGATCATTACT
AGAATCCATGTTTGTCCTAGA
Found at i:597062 original size:143 final size:143
Alignment explanation
Indices: 596804--597069 Score: 349
Period size: 143 Copynumber: 1.9 Consensus size: 143
596794 AAACCAAAGC
* * *
596804 ATCAATATCGTGCATCATTATGAGAAAACTAAGTTTATGGTGCCTAATAAGGAAAAGAATAGGGA
1 ATCAATATCGTGCATCATTATGAGAAAACTAAGCTTATGGTACCTAATAAGGAAAAGAATAGGAA
* *
596869 GTAGTATGACTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATTAAAAACGGTTGA
66 GTAGTATAACTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAACGGTTGA
596934 AATAAATGATTCT
131 AATAAATGATTCT
* * * * ** *
596947 ATCAATATCGTGTATCCTTATTAGAAGACTAAGCTTATGGTACCTAA-ACCTGAAAAGGATAGGA
1 ATCAATATCGTGCATCATTATGAGAAAACTAAGCTTATGGTACCTAATA-AGGAAAAGAATAGGA
* * *
597011 ATTAGTATAACTATTCTTGTTTGTCTTATGTATG-G-GAGAAACTTTGATTCTATCAAAAA
65 AGTAGTATAACTATTCATGTTTGTCTTAT-T-TGAGAGACAAACTTTGATTCTATCAAAAA
597070 TGGCAGAAAG
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
142 1 0.01
143 100 0.95
144 2 0.02
145 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (143 bp):
ATCAATATCGTGCATCATTATGAGAAAACTAAGCTTATGGTACCTAATAAGGAAAAGAATAGGAA
GTAGTATAACTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAACGGTTGA
AATAAATGATTCT
Found at i:598351 original size:476 final size:473
Alignment explanation
Indices: 596947--599511 Score: 3010
Period size: 476 Copynumber: 5.4 Consensus size: 473
596937 AAATGATTCT
* * * * *
596947 ATCAATATCGTGTATCCTTATTAGAAGACTAAGCTTATGGTACCTAAACCTGAAAAGGATAGGAA
1 ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAGGGA
* * * * * *
597012 TTAGTATAACTATTCTTGTTTGTCTTATGTATGGGAGAAACTTTGATTCTATCAAAAATGGCAGA
66 TTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCTGA
* ** * *
597077 AAGAAAAGCTTTTCTTGCGACTGCAAAGCGTCAATGTCATGTGTCCTAATGAAAGAAATGAGTTT
131 AAGAAAA-CTTTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGGAATGTGTTT
* * * *
597142 TTGGTTCCCAACCACGAAAAGAATGGAGATTGTTACGAGAAGCAATGCTTGCCTTATTTGAGGGA
195 TTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGA
* * * *
597207 TGAACCTTGAATTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATGCAAAATAAAATCATCAATA
260 TGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATA
* * * * * * *
597271 TCTTTTATCATAATGTGGGGTATATGTTTATAGTGCCTAATCACAGAGTGAATGGAGATCATTAC
324 TCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACA-AATGAATGAAGATCATTAC
* * * * *
597336 TAGAATCCATGTTTGTCACAAATGATGCACGAACTTAGACTATGCAAAAATTGGTGGGAAGAAAG
388 TAGAATCCATGTTTGTCACAAATGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAGAAAG
* * *
597401 ACTTTCTTGCAAAACCAAAGC
453 CCTTTCTTACGAAACCAAAGC
* * * *** * * *
597422 ATCAAAATCATGTATCCTTATGAGAAGACTATGTTTATGACACCTAATCCTAAAAAG-AAAGAGG
1 ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAG-GG
** * * * ** *
597486 ATTAGTATGGCTATTTATGCTTGTCTTATTTAAGAGACCGACTTTGATTCTATCAAAAACGGCTC
65 ATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCTG
* * * * * ** * ** *
597551 AAAGAAATGCTATTT--TGCAACACCAATGCATCAATGTGTTTTACCCTAATAAAAGGAATGTGT
130 AAAGAAA-ACT-TTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGGAATGTGT
* * * * *
597614 TTTTAGTTCCCAGTCATGAAAGGAATGGAGATGGTTAAGAGAATCAATGCTTGCCTTATTTAAGG
193 TTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGG
** ** * * * * * * *
597679 GACAAACAATAATTTTAAATAAAACAGGGCTAAA-AAAAGATTTCCACGCAAAAAAAAAAAGCAC
258 GATGAACTTTGATTTT-AAGAAAATAGGGC-AAAGAAAAGATTTCCAAGC--AAAAGAAAATCAT
* * * *
597743 CAATATCATTTATCTTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGTTC
319 CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAA-TGAATGAAGATC
* * * *
597808 ATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAATTGGTAGGAA
383 ATTACTAGAATCCATGTTTGTCACAAATGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAA
* *
597873 GAAAGCCTTTCTTATGAAACCATAGC
448 GAAAGCCTTTCTTACGAAACCAAAGC
* * *
597899 ATCAATATCTTGTATCCTTATTAGAAAACTAAGTTTATGGTGCCTAAACCTGAAAAGCATAGGGA
1 ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAGGGA
* * * * * * *
597964 TTAGTATAATTACTCAAGTTTGTCTTATGCAAGAGACAAACTTTGATTTTATAAAAAATGGCTGA
66 TTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCTGA
* * * * *
598029 AAGAAAAGTATTTCTTGCGACCCCAAAGCGTTAATGTCATGTGTCTTAATGAAAGGAATATGTTT
131 AAGAAAACT-TTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGGAATGTGTTT
* * * *
598094 TTGGTTTCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAGTGCTTGCCTTACTTATGGGA
195 TTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGA
* *
598159 TGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAAACATCAATA
260 TGAACTTTGATTTTA-AGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATA
* * * * *
598224 ACATTTATCCTAATGAGGAGAATCTGTTTACAGTGCCTAATCACCAAATGAATGAAGATCGTTGC
324 TCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA-CAAATGAATGAAGATCATTAC
* *
598289 TAGAATCCATGTTTGTCCCAATTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAGAAAG
388 TAGAATCCATGTTTGTCACAAATGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAGAAAG
*
598354 CCTTTCTTACAAAACCAAAGC
453 CCTTTCTTACGAAACCAAAGC
598375 ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTAT-GGTG
1 ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAGG-G
*
598439 ATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATAAAAAACGGCTG
65 ATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCTG
** * *
598504 AAAGAAAACCTTTTCATGTTAGCCCAAAGCGTCAATGTCATGTGTCCTATTGAAAGGAATGTGTT
130 AAAGAAAA-CTTTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGGAATGTGTT
* * * * *
598569 TTTGGTTCCTAATCATGTAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCCTTACTTATGGG
194 TTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGG
* * * * *
598634 ATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAACGAAAATCATGAAT
259 ATGAACTTTGATTTTA-AGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAAT
* * * *
598699 ATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATTACCAAATGAATGAAGATCATTG
323 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA-CAAATGAATGAAGATCATTA
* * * * *
598764 CTAGAATCCATGTTTGTCCCAACTAAGGCACGAACATAGACTTTACAAAAAATGGTGGGAAGAAA
387 CTAGAATCCATGTTTGTCACAAATGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAGAAA
*
598829 GCCTTTCTTACGGAACCAAAGC
452 GCCTTTCTTACGAAACCAAAGC
* *
598851 ATCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTAT-GGTA
1 ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAGG-G
* * *
598915 ATTAGTATAACTATTCATGTTTGTCTTCTCTAAGAGACAAACTTTGATTCTATCAAAAACGACTG
65 ATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCTG
** * *
598980 AAAGAAAACCTTTTCATGTTACCCCAAAGGGTCAATGTCATGTGTCCTATTGAAAGGAATGTGTT
130 AAAGAAAA-CTTTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGGAATGTGTT
* * * *
599045 TTTGGTTCCCAATCACGAAAAAAATGGAGATTATTACAAGAATCAATGCTTG-CTTATTTAAGGG
194 TTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGG
* * * *
599109 TTGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAATATTTTCATA-CAAAAGAAAATCATCAA
259 ATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGATTTCCA-AGCAAAAGAAAATCATCAA
* *
599173 TATCATTTATCCAAACGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
322 TATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAA-TGAATGAAGATCATT
** * * *
599238 ACCCGAATCCACGTTTGTCACAAATGAGGCATGAACATATACTTTAC-AAAATTGGTGGGAAAAA
386 ACTAGAATCCATGTTTGTCACAAATGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAGAA
* * *
599302 AACCATTCTTATGAAACCAAAGC
451 AGCCTTTCTTACGAAACCAAAGC
* * * * * ** * * * * * *
599325 ATAAAAATC-GGCTATCATTATGAGAAGAAAAAAGTTTATGGTTCCTAATCTTTAAAAGAATGGG
1 ATCAATATCATG-TATCCTTATTAGAAG-ACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAGG
*** * * * * **
599389 GATTAGTGGGACAATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGGG
64 GATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCT
* * * * *
599454 GAAAGAAAAACTTTTCATGCGACACTAAAGTGTCAATGTCATATATCCTAATGAAAGG
129 GAAAG-AAAACTTTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGG
599512 TGTAGACACC
Statistics
Matches: 1792, Mismatches: 275, Indels: 46
0.85 0.13 0.02
Matches are distributed among these distances:
473 1 0.00
474 171 0.10
475 410 0.23
476 825 0.46
477 257 0.14
478 128 0.07
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (473 bp):
ATCAATATCATGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATAGGGA
TTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACGGCTGA
AAGAAAACTTTTCATGCGACCCCAAAGCGTCAATGTCATGTGTCCTAATGAAAGGAATGTGTTTT
TGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAT
GAACTTTGATTTTAAGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATC
ATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAATGAATGAAGATCATTACTAG
AATCCATGTTTGTCACAAATGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
TTCTTACGAAACCAAAGC
Found at i:598496 original size:158 final size:159
Alignment explanation
Indices: 598333--598973 Score: 345
Period size: 159 Copynumber: 4.0 Consensus size: 159
598323 ATAGACTTTA
* * *
598333 CAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCATGTATCCTTATTA
1 CAAAAAATGGTGGAAAGAAAGCCTTTCATAC-AAACCAAAGCATCAATATCATGTATCCTTATTA
* * *
598398 GAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATGGTGATTAGTATA-ACTATTCATGTTTG
65 GAAGAATAAGTTTATGGTGCCTAAACCTGAAAAGAATGGAGATTAGTATACACTATTCATGTTTG
*
598462 TCTTATGTAAGAGACAAACTTTGATTCTAT
130 TCTTATCTAAGAGACAAACTTTGATTCTAT
* * ** ** * * *
598492 -AAAAAACGGCT-GAAAGAAAACCTTTTCATGTTAGCCCAAAGCGTCAATGTCATGTGTCC-TAT
1 CAAAAAATGG-TGGAAAGAAAGCC-TTTCAT-ACAAACCAAAGCATCAATATCATGTATCCTTAT
** * * * * * ** *
598554 T-GAAAGGAATGTGTTTTTGGTTCCTAATCATGTAAAGAATGGAGATT-GT-TACAAGAATCAAT
63 TAG-AA-GAATAAGTTTATGGTGCCTAAACCTGAAAAGAATGGAGATTAGTATACACTATTC-AT
* * * * ** *
598616 GCTTGCCTTA-CTTATGGGATGAACTTTGATTTTAT
125 GTTTGTCTTATC-TAAGAGACAAACTTTGATTCTAT
* * * * * * * * *
598651 GGAAAATAA--G-GCAAAGAAAAG-ATTTCCATGCAAACGAAAATCATGAATATCATTTATCCTA
1 -CAAAA-AATGGTGGAAAG-AAAGCCTTT-CATACAAAC-CAAAGCATCAATATCATGTATCCTT
* ** * * * * * ** *
598712 ATGA-AGAGAATGTGTTTATAGTGCCTAATTACC--AAATGAATGAAGATCA-T-TGCTAGAATC
61 ATTAGA-AGAATAAGTTTATGGTGCCTAA--ACCTGAAAAGAATGGAGATTAGTATAC-ACTATT
** * * * *
598772 CATGTTTGTCCCAACTAAG-GCACGAACATAGACTT-TA-
122 CATGTTTGTCTTATCTAAGAG-ACAAACTTTGA-TTCTAT
* * * *
598809 CAAAAAATGGTGGGAAGAAAGCCTTTCTTACGGAACCAAAGCATCAATATCGTGTATCCTTATTA
1 CAAAAAATGGTGGAAAGAAAGCCTTTCATAC-AAACCAAAGCATCAATATCATGTATCCTTATTA
* *
598874 GAAGACTAAGTTTATGGTGCCTAAACCTGAAAAGTATGGTA-ATTAGTATA-ACTATTCATGTTT
65 GAAGAATAAGTTTATGGTGCCTAAACCTGAAAAGAATGG-AGATTAGTATACACTATTCATGTTT
*
598937 GTCTTCTCTAAGAGACAAACTTTGATTCTAT
129 GTCTTATCTAAGAGACAAACTTTGATTCTAT
598968 CAAAAA
1 CAAAAA
598974 CGACTGAAAG
Statistics
Matches: 339, Mismatches: 104, Indels: 78
0.65 0.20 0.15
Matches are distributed among these distances:
156 5 0.01
157 9 0.03
158 120 0.35
159 184 0.54
160 14 0.04
161 5 0.01
162 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (159 bp):
CAAAAAATGGTGGAAAGAAAGCCTTTCATACAAACCAAAGCATCAATATCATGTATCCTTATTAG
AAGAATAAGTTTATGGTGCCTAAACCTGAAAAGAATGGAGATTAGTATACACTATTCATGTTTGT
CTTATCTAAGAGACAAACTTTGATTCTAT
Found at i:604705 original size:475 final size:474
Alignment explanation
Indices: 603472--605591 Score: 2306
Period size: 475 Copynumber: 4.5 Consensus size: 474
603462 AATGTCATGT
* * * *
603472 GTTTTTGGTTCCCGATTATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTCGCCTTATTTAA
1 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAA
* * **
603537 GGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAATGATTTCTGTGCAAAAGAAAATCAT
66 GGGATGAACATTGAATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
603601 CAATGTCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATGAAGATC
130 CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC
* ** * * *
603666 ATTACTACAATCTGTGTTTGTCACAAATG-TGGCATGAACTTAGACTATTCAGAAATTAGTGGGA
195 ATTACTAGAATCCATGTTTGTCACAAATGAT-GCACGAACTTAGACTATACAAAAATTAGTGGGA
* *
603730 AGAAAGACTTTCTTACGAAACCATAGCATCAATATCGTGTATCCTTATGAGAAGACTAA-CTTTA
259 AGAAAGACTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGC-TTA
* * * * *
603794 TGGTGCCTAATA--TGGAAAAGAATAGGTAA-TAGTATGACTATTCATGTTTGTCTTATTTAAGC
323 TGGTACCTAA-ACCT-GAAAAGGATAGG-AATTAGTATAACTATTCATGTTTGTCTTATGTAAGA
**** * * *
603856 GACAAACTTTGATTCTAT-AAAATACAATTGAAATAAAATGCTTTTCTTGCGACACTAATGCGTC
385 GACAAACTTTGATTCTATCAAAA-ACGGCAGAAAGAAAA-GCTTTTCTTGCGAC-CCAAAGCGTC
* * * *
603920 AATGTCTTATAACCTAATGAAATGAATG
447 AATGTCATGTATCCTAATGAAAGGAATG
* * *
603948 CGTTTTTGGTTGCCAATCATGAAAAGAATTGAGATTGTTACGAGAATCAATAG-TTACCTTATTT
1 -GTTTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAAT-GCTTGCCTTATTT
* * * * * *
604012 AAGGGACGAACATT-AATTTTAAGCAAAATAAGGCAAAGAAAAAATTTCAATGCAAAAGATAATC
64 AAGGGATGAACATTGAA-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * * *
604076 ACCAATATCATTTATCCTAATG-GGA-AAAATGTGTCTATAGCGCTTGATCACAAAATGAATGAA
128 ATCAATATCATTTATCCTAATGAGGAGAATATGT-T-TATAGTGCCTAATCACAAAGTGAATGAA
* * * ** * * *
604139 GATCGTTAC-ATGAATTCATGTTTATCTTAATTGAGGCACGAACTTAGACTTTACAAAAATTAGT
191 GATCATTACTA-GAATCCATGTTTGTCACAAATGATGCACGAACTTAGACTATACAAAAATTAGT
* * * *
604203 GGGAAGAAAGCCTATCTTATGAAACCAAAGTATCAATATCGTGTATCCTTATTAGAAGACTAAGC
255 GGGAAGAAAGACTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGC
* * *
604268 TTATGGTACCTAAACCTGAAAAGGATAGGAATTAGTATAACTATTCTTGTTTGTCTTATGTATGG
320 TTATGGTACCTAAACCTGAAAAGGATAGGAATTAGTATAACTATTCATGTTTGTCTTATGTAAGA
* * * *
604333 GAGAAACTTTGATTCTATCAAAAATGGCAGAAAGAAAAGCTTTTCTTGCGACTGCAAAGGGTCAA
385 GACAAACTTTGATTCTATCAAAAACGGCAGAAAGAAAAGCTTTTCTTGCGAC-CCAAAGCGTCAA
* *
604398 TGTCATGTGTCCTAATGAAAGAAATG
449 TGTCATGTATCCTAATGAAAGGAATG
* * * *
604424 AGTTTTTGGTTCCCAACCACGAAAAGAATGGAGATTGTTACGAGAAGCAATGCTTGCCTTATTTG
1 -GTTTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTA
* *
604489 AGGGATGAACCTTGAATTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATGCAAAACAAAATCAT
65 AGGGATGAACATTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * *
604553 CAATATCTTTTATCCTAATGTGGGGTATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC
130 CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC
*
604618 ATTACTAGAATCCATGTTTGTCACAAATGATGCACGAACTTAGACTATACAAAAATTGGTGGGAA
195 ATTACTAGAATCCATGTTTGTCACAAATGATGCACGAACTTAGACTATACAAAAATTAGTGGGAA
* * * * * *
604683 GAAAGACTTTCTTGTAAAACCAAAGCATCAAAATCATGTATCCTTATGAGAAGACTATGTTTATG
260 GAAAGACTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGCTTATG
** * * * * ** * * * *
604748 ACACCTAATCCT-AAAAAGAAAGAGGATTAGTATGGCTATTTATGCTTGTCTTATTTAAGAGACC
325 GTACCTAAACCTGAAAAGGATAG-GAATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACA
* * *** * * * * * *
604812 GACTTTGATTCTATAAAAAACGGTTCAATGAAATGCTGTT-TTGCGACACCAATGCATCAATGTG
389 AACTTTGATTCTATCAAAAACGGCAGAAAGAAAAGCTTTTCTTGCGAC-CCAAAGCGTCAATGTC
* * * *
604876 TTTTACCCTAATAAAAGGAATG
453 ATGTATCCTAATGAAAGGAATG
* * * *
604898 TGTTTTTGGTTCCCAGTCATGAAAGGAATGGAGATGGTTAAGAGAATCAATGCTTGCCTTATTTA
1 -GTTTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTA
* * ** * * * * *
604963 AGGGATAAACAAT-AATTTTAAATAAAACAGGGCTAAA-AAAAGACTTCCACGCAAAAAAAAAGC
65 AGGGATGAACATTGAA-TTTAAGGAAAATAGGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * *
605026 ACCAATATGATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGT
128 ATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGA
* * * * * *
605091 TCATTACTAGAATCCATGTTTGTCAC-AAT--T--AAG-GCATAGACTTTACAAAAATTGGTAGG
193 TCATTACTAGAATCCATGTTTGTCACAAATGATGCACGAACTTAGACTATACAAAAATTAGTGGG
* * * * *
605150 AAGAAAGCCTTTCTTATGAAACCATAGCATCAATATCTTGTATCCTTATTAGAAGACTAAGTTTA
258 AAGAAAGACTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGCTTA
* * * * * *
605215 TGGTGCCTAAACCTGAAAAGCATAGGGATTAGTATAACTACTCAAGTTTGTCTTATGCAAGAGAC
323 TGGTACCTAAACCTGAAAAGGATAGGAATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGAC
* ** * * *
605280 AAACTTTGATTTTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGTGACCCCAAAGTGTAAATGT
388 AAACTTTGATTCTATCAAAAACGGCAGAAAGAAAAGCTTTTCTTGCGA-CCCAAAGCGTCAATGT
* *
605345 CATGTGTTCTAATGAAAGGAATG
452 CATGTATCCTAATGAAAGGAATG
* * * * *
605368 TTTTTTTGTTCCCAATCATGAAAAGAATGGAGATTATTGCGAGAATCAATGGTTGCCTTATTTAA
1 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAA
* * * * *
605433 GGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
66 GGGATGAACATTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * *
605498 AATATCATTTATCCTAATGAAGAGAATATGTTTAGAGTTCCTAATCACAAAGTGAATGAAGATCA
131 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA
* * *
605563 ATACCAGAATCCATGTTTGTCCCAAATGA
196 TTACTAGAATCCATGTTTGTCACAAATGA
605592 GCTTTCGGAT
Statistics
Matches: 1358, Mismatches: 257, Indels: 61
0.81 0.15 0.04
Matches are distributed among these distances:
468 3 0.00
469 334 0.25
470 45 0.03
471 1 0.00
472 1 0.00
473 2 0.00
474 125 0.09
475 363 0.27
476 138 0.10
477 336 0.25
478 10 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GTTTTTGGTTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAA
GGGATGAACATTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA
TTACTAGAATCCATGTTTGTCACAAATGATGCACGAACTTAGACTATACAAAAATTAGTGGGAAG
AAAGACTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGCTTATGG
TACCTAAACCTGAAAAGGATAGGAATTAGTATAACTATTCATGTTTGTCTTATGTAAGAGACAAA
CTTTGATTCTATCAAAAACGGCAGAAAGAAAAGCTTTTCTTGCGACCCAAAGCGTCAATGTCATG
TATCCTAATGAAAGGAATG
Found at i:605720 original size:20 final size:20
Alignment explanation
Indices: 605687--605735 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
605677 GCTTCTAGTG
* *
605687 TGGGGGCTATCGGTTGCGACC
1 TGGGGG-TACCGGTCGCGACC
605708 TGGGGGTACCGGTCGCGACC
1 TGGGGGTACCGGTCGCGACC
605728 TGGTGGGT
1 TGG-GGGT
605736 GCTGCCTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.08, C:0.22, G:0.47, T:0.22
Consensus pattern (20 bp):
TGGGGGTACCGGTCGCGACC
Found at i:606344 original size:8 final size:8
Alignment explanation
Indices: 606331--606356 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
606321 AACATCATTC
606331 ATCACAAA
1 ATCACAAA
606339 ATCACAAA
1 ATCACAAA
606347 ATCACAAA
1 ATCACAAA
606355 AT
1 AT
606357 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:606933 original size:13 final size:13
Alignment explanation
Indices: 606915--606940 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
606905 TACAGCAAGT
606915 ATGTATCGATACA
1 ATGTATCGATACA
606928 ATGTATCGATACA
1 ATGTATCGATACA
606941 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:609191 original size:21 final size:21
Alignment explanation
Indices: 609158--609202 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
609148 TTGCAAGTTG
*
609158 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
609180 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
609200 AAA
1 AAA
609203 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:611026 original size:15 final size:15
Alignment explanation
Indices: 611006--611036 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
610996 TAAAAATGTC
*
611006 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
611021 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
611036 C
1 C
611037 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:616991 original size:14 final size:12
Alignment explanation
Indices: 616980--617019 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
616970 AATCAAAAGT
616980 AAACACAAAAAA
1 AAACACAAAAAA
616992 CAAA-ACAAAAAA
1 -AAACACAAAAAA
617004 AACACACAAAAAA
1 AA-ACACAAAAAA
617017 AAA
1 AAA
617020 AGTGTAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.08
12 10 0.40
13 13 0.52
ACGTcount: A:0.82, C:0.17, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACACAAAAAA
Found at i:617002 original size:13 final size:13
Alignment explanation
Indices: 616980--617018 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
616970 AATCAAAAGT
*
616980 AAACACAAAAAAC
1 AAACAAAAAAAAC
616993 AAAACAAAAAAAAC
1 -AAACAAAAAAAAC
*
617007 ACACAAAAAAAA
1 AAACAAAAAAAA
617019 AAGTGTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAAAC
Found at i:617355 original size:9 final size:9
Alignment explanation
Indices: 617341--617375 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
617331 ATCTTCACAA
617341 AAAAAAAAC
1 AAAAAAAAC
617350 AAAAAAAAC
1 AAAAAAAAC
617359 AAAAAACAA-
1 AAAAAA-AAC
617368 AAAAAAAA
1 AAAAAAAA
617376 AGAAGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 2 0.08
9 21 0.84
10 2 0.08
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:617362 original size:20 final size:20
Alignment explanation
Indices: 617337--617376 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
617327 CCTAATCTTC
617337 ACAAAAAA-AAAACAAAAAAA
1 ACAAAAAACAAAA-AAAAAAA
617357 ACAAAAAACAAAAAAAAAAA
1 ACAAAAAACAAAAAAAAAAA
617377 GAAGGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (20 bp):
ACAAAAAACAAAAAAAAAAA
Found at i:617364 original size:16 final size:15
Alignment explanation
Indices: 617339--617376 Score: 67
Period size: 16 Copynumber: 2.5 Consensus size: 15
617329 TAATCTTCAC
617339 AAAAAAAAAACAAAA
1 AAAAAAAAAACAAAA
617354 AAAACAAAAAACAAAA
1 AAAA-AAAAAACAAAA
617370 AAAAAAA
1 AAAAAAA
617377 GAAGGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAACAAAA
Found at i:618406 original size:66 final size:65
Alignment explanation
Indices: 618313--619130 Score: 273
Period size: 67 Copynumber: 12.4 Consensus size: 65
618303 TCTTCAAATA
* * * * *
618313 CCTTCTTAAAGTCCACAAATCAGTGGCAATCTCTTCCCAAAGTCCACACCTCAATGGCATCCCTT
1 CCTT-TTAAAGTCCACAACTCTGTGGCAATCTCTTCCCAAAGCCCACAACTCCATGGCA--CCTT
618378 TTT
63 TTT
* * *
618381 CCTTTT-AAGTCCACAACTCTGTGGC-ATCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTT
1 CCTTTTAAAGTCCACAACTCTGTGGCAATCTCTTC-CCAAAGCCCACAACTCCATGGCACCTTTT
618444 T
65 T
* ** * * * *
618445 -CTTTTCAAAGCCCACAACTCTGTGGC-ATC-CTT-TTAAAGTCCACAACTTCGTGGCACCTTGT
1 CCTTTT-AAAGTCCACAACTCTGTGGCAATCTCTTCCCAAAGCCCACAACTCCATGGCACCTTTT
618506 T
65 T
* * * * * *
618507 CCTTTTAAA-TCCACAACTCCGTGGCATTTTTTTCCTTTAAAGCCCACAACTCCATGGCACTTTT
1 CCTTTTAAAGTCCACAACTCTGTGGCAATCTCTTCC--CAAAGCCCACAACTCCATGGCAC-CTT
618571 TTT
63 TTT
* * * * * * * **
618574 CTTTTTAAAGTCCACAACTCTGTGGCACTTTGTTCCTTTTAAA-TCCACAACTCCGTGGCATTTT
1 CCTTTTAAAGTCCACAACTCTGTGGCAATCTCTTCC---CAAAGCCCACAACTCCATGGCACCTT
618638 TTT
63 TTT
* * * * * *** * ** * *
618641 CC-TTTAAAGCCCACAACTCCGTGCCACTCTTTTTTTTTTAAAGTCCACAACTCTGTGGCATCTC
1 CCTTTTAAAGTCCACAACTCTGTGGCAATC---TCTTCCCAAAGCCCACAACTCCATGGCACCTT
618705 TTT
63 TTT
* * * * * * * * *
618708 CC-TTCAAAGCCCACAACTCAGT-GCCATCCCTTTTCCCTGTAAGTCCACAACT-CAGTAGCATC
1 CCTTTTAAAGTCCACAACTCTGTGGCAAT--CTCTTCCC--AAAGCCCACAACTCCA-TGGCACC
618770 TCTTTT
61 T-TTTT
* * * ** * * **
618776 -C---T-AAGTCCACAACTCCGTTGCACCATGTTCCTT-TTAAA-TCCACAACTCCGTGGCATTT
1 CCTTTTAAAGTCCACAACTCTGTGGCA--AT-CT-CTTCCCAAAGCCCACAACTCCATGGCACCT
618834 TTTT
62 TTTT
* * * * *** * * **
618838 CC-TTTAAAGCCCATAACTCCGTGGCACTCTTTTTCTTTTTAAAGTCCACGACTCTGTGGCACCT
1 CCTTTTAAAGTCCACAACTCTGTGGCAATC----TCTTCCCAAAGCCCACAACTCCATGGCACCT
*
618902 TGTT
62 TTTT
* * * * * * *
618906 CCTTTTAAA-TCCACAACTCCGTGGCATTTTTTTCCTTTAAAGCCCATAACTCCGTGGCACTCTT
1 CCTTTTAAAGTCCACAACTCTGTGGCAATCTCTTCC--CAAAGCCCACAACTCCATGGCAC-CTT
618970 TTT
63 TTT
* *
618973 CTTTTTAAAGTCCACAACTCCGTGGC-ATCTCTTTCCTTCAAAGCCCACAACT-CAGTGGCATCC
1 CCTTTTAAAGTCCACAACTCTGTGGCAATCTC-TTCC--CAAAGCCCACAACTCCA-TGGCA-CC
*
619036 CTTTT
61 TTTTT
* * * ** * * * * *
619041 CCCTGT-AAGTCCACAACTCAGTGGC-ATCTCTTTTCTAAGTCCACGACTCCGTAGCACCTTTTT
1 CCTTTTAAAGTCCACAACTCTGTGGCAATCTCTTCCCAAAGCCCACAACTCCATGGCACCTTTTT
* * *
619104 CTTTTTAAAGCCCACAACTCCGTGGCA
1 CCTTTTAAAGTCCACAACTCTGTGGCA
619131 CCCCTTTAAG
Statistics
Matches: 586, Mismatches: 116, Indels: 99
0.73 0.14 0.12
Matches are distributed among these distances:
61 14 0.02
62 34 0.06
63 37 0.06
64 62 0.11
65 36 0.06
66 126 0.22
67 131 0.22
68 130 0.22
69 16 0.03
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.35
Consensus pattern (65 bp):
CCTTTTAAAGTCCACAACTCTGTGGCAATCTCTTCCCAAAGCCCACAACTCCATGGCACCTTTTT
Found at i:618530 original size:33 final size:34
Alignment explanation
Indices: 618351--619132 Score: 617
Period size: 33 Copynumber: 23.7 Consensus size: 34
618341 ATCTCTTCCC
* **
618351 AAAGTCCACACCTCAATGGCATCCCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCA--CCTTTTTCCTTTT
* * *
618387 -AAGTCCACAACTCTGTGGCATC-TTTT-C-TTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
618417 AAAGCCCACAACTCCGTGGCACCTTTTT-CTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
618450 CAAAGCCCACAACTCTGTGGCA------TCCTTTT
1 -AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
618479 AAAGTCCACAACTTCGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
**
618513 AAA-TCCACAACTCCGTGGCATTTTTTTCC-TTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * *
618545 AAAGCCCACAACTCCATGGCACTTTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
618580 AAAGTCCACAACTCTGTGGCA-CTTTGTTCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTT-TTCCTTTT
**
618614 AAA-TCCACAACTCCGTGGCATTTTTTTCC-TTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
618646 AAAGCCCACAACTCCGTGCCACTCTTTTT-TTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * * *
618680 AAAGTCCACAACTCTGTGGCATCTCTTTCC-TTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * * *
618713 AAAGCCCACAACTCAGTGCCATCCCTTTTCCCTGT
1 AAAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
* * *
618748 -AAGTCCACAACTCAGTAGCATCTCTTTT-C---T
1 AAAGTCCACAACTCCGTGGCACCT-TTTTCCTTTT
* * *
618778 -AAGTCCACAACTCCGTTGCACCATGTTCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
**
618811 AAA-TCCACAACTCCGTGGCATTTTTTTCC-TTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
618843 AAAGCCCATAACTCCGTGGCACTCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * *
618878 AAAGTCCACGACTCTGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
**
618912 AAA-TCCACAACTCCGTGGCATTTTTTTCC-TTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
618944 AAAGCCCATAACTCCGTGGCACTCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * *
618979 AAAGTCCACAACTCCGTGGCATCTCTTTCC-TTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * *
619012 AAAGCCCACAACTCAGTGGCATCCCTTTTCCCTGT
1 AAAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
* *
619047 -AAGTCCACAACTCAGTGGCATCTCTTTT-C---T
1 AAAGTCCACAACTCCGTGGCACCT-TTTTCCTTTT
* * *
619077 -AAGTCCACGACTCCGTAGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
619110 AAAGCCCACAACTCCGTGGCACC
1 AAAGTCCACAACTCCGTGGCACC
619133 CCTTTAAGTC
Statistics
Matches: 596, Mismatches: 108, Indels: 86
0.75 0.14 0.11
Matches are distributed among these distances:
28 19 0.03
29 12 0.02
30 43 0.07
31 20 0.03
32 33 0.06
33 202 0.34
34 184 0.31
35 83 0.14
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.35
Consensus pattern (34 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:618601 original size:101 final size:101
Alignment explanation
Indices: 618475--619130 Score: 731
Period size: 101 Copynumber: 6.6 Consensus size: 101
618465 TGTGGCATCC
618475 TTTTAAAGTCCACAACT-TCGTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTT
1 TTTTAAAGTCCACAACTCT-GTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTT
* *
618539 TCCTTTAAAGCCCACAACTCCATGGCACTTTTTTTCT
65 TCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
*
618576 TTTTAAAGTCCACAACTCTGTGGCACTTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTTT
1 TTTTAAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTTT
*
618641 CCTTTAAAGCCCACAACTCCGTGCCACTCTTTTT-T
66 CCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
* * * * * *
618676 TTTTAAAGTCCACAACTCTGTGGCATCTCT-TTCC-TTCAAAGCCCACAACTCAGTGCCATCCCT
1 TTTTAAAGTCCACAACTCTGTGGCACCT-TGTTCCTTTTAAA-TCCACAACTCCGTGGCAT--TT
* * * * *
618739 TTTCCCTGT-AAGTCCACAACTCAGTAGCA-TC----TCT
62 TTTTCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
* * *
618773 TTTCT-AAGTCCACAACTCCGTTGCACCATGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTT
1 TTT-TAAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTT
*
618837 TCCTTTAAAGCCCATAACTCCGTGGCACTCTTTTTCT
65 TCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
*
618874 TTTTAAAGTCCACGACTCTGTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTTT
1 TTTTAAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTTT
*
618939 CCTTTAAAGCCCATAACTCCGTGGCACTCTTTTTCT
66 CCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
* * * * * *
618975 TTTTAAAGTCCACAACTCCGTGGCATCTCT-TTCC-TTCAAAGCCCACAACTCAGTGGCATCCCT
1 TTTTAAAGTCCACAACTCTGTGGCACCT-TGTTCCTTTTAAA-TCCACAACTCCGTGGCAT--TT
* * * *
619038 TTTCCCTGT-AAGTCCACAACTCAGTGGCA-TC----TCT
62 TTTTCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
* * * * * *
619072 TTTCT-AAGTCCACGACTCCGTAGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA
1 TTT-TAAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAA-TCCACAACTCCGTGGCA
619131 CCCCTTTAAG
Statistics
Matches: 478, Mismatches: 54, Indels: 49
0.82 0.09 0.08
Matches are distributed among these distances:
95 8 0.02
96 19 0.04
97 73 0.15
98 29 0.06
99 5 0.01
100 54 0.11
101 255 0.53
102 27 0.06
103 8 0.02
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.36
Consensus pattern (101 bp):
TTTTAAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAATCCACAACTCCGTGGCATTTTTTT
CCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
Found at i:619194 original size:49 final size:49
Alignment explanation
Indices: 619134--619689 Score: 625
Period size: 49 Copynumber: 12.0 Consensus size: 49
619124 CGTGGCACCC
*
619134 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
619183 CTTTAATTCCAATGTAGCTGGCCTTGAATCAACACATTGGCA-C-----
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
619226 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
619275 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
619318 CTTTAAGTCCAATATAGTTCGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* ***
619367 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCCT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
619416 C-TTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
619458 GTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
619507 CTTTAAGACCAATTTCGCTGGCCTTGAATCAGCACATTGG---C---AT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
619550 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA-
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* *
619598 ----AA-TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
619642 CTTTAAGACCAATGTCGCTGGCCCTGAATCAGCACATTGGCACCTTTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTA
619690 AAACCCAATA
Statistics
Matches: 438, Mismatches: 38, Indels: 62
0.81 0.07 0.12
Matches are distributed among these distances:
43 193 0.44
44 5 0.01
46 2 0.00
47 1 0.00
48 42 0.10
49 195 0.45
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
Found at i:619244 original size:43 final size:44
Alignment explanation
Indices: 619126--619690 Score: 566
Period size: 43 Copynumber: 12.3 Consensus size: 44
619116 CACAACTCCG
*
619126 TGGCACCCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCA-CCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * *
619171 TGGCACCTTTATCTTTAATTCCAATGTAGCTGGCCTTGAATCAACACAT
1 TGGCACC-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
*
619220 TGGCA-CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
*
619263 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACC-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * *
619312 TGGCA-CCTTTAAGTCCAATATAGTTCGCCTTGAATCAGCATAT
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
*
619355 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACC-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
*
619404 TGGCACCTCCCTCTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
1 TGGCA---CCCT-TTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * *
619452 TGGCA-CGTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * *
619495 TGGCACCTTTGTCTTTAAGACCAATTTCGCTGGCCTTGAATCAGCACAT
1 TGGCACC-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * * *
619544 TGGCA-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * *
619587 TGGCA-CCTTTAAATCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
* * * *
619630 TGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCCTGAATCAGCACAT
1 TGGCACC-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
619679 TGGCA-CCTTTAA
1 TGGCACCCTTTAA
619691 AACCCAATAT
Statistics
Matches: 449, Mismatches: 38, Indels: 68
0.81 0.07 0.12
Matches are distributed among these distances:
43 200 0.45
44 8 0.02
45 5 0.01
47 2 0.00
48 41 0.09
49 191 0.43
52 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (44 bp):
TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACAT
Found at i:619691 original size:92 final size:92
Alignment explanation
Indices: 619133--619690 Score: 744
Period size: 92 Copynumber: 6.1 Consensus size: 92
619123 CCGTGGCACC
* *
619133 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAATTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
*
619198 AGCTGGCCTTGAATCAACACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
619225 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
619290 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
619317 CCTTTAAGTCCAATATAGTTCGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
619382 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
619409 CCTCCCTCTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C-----GTTTAAGTCC
1 ----CCT-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCC
* * *
619468 AATATCGCTGGCCTTGAATCAGCATATTGGCA
61 AATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * * *
619500 CCTTTGTCTTTAAGACCAATTTCGCTGGCCTTGAATCAGCACATTGG---C---ATCTTTAAGAC
1 -C-----CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
*
619559 CAATGTCGCTGGCCTTGAATCAGCACATTGGCA
60 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
619592 CCTTTAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* *
619657 CGCTGGCCCTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
619684 CCTTTAA
1 CCTTTAA
619691 AACCCAATAT
Statistics
Matches: 425, Mismatches: 23, Indels: 36
0.88 0.05 0.07
Matches are distributed among these distances:
86 36 0.08
88 2 0.00
89 1 0.00
90 1 0.00
91 39 0.09
92 304 0.72
93 2 0.00
96 4 0.01
97 36 0.08
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:619731 original size:135 final size:133
Alignment explanation
Indices: 619226--619716 Score: 604
Period size: 135 Copynumber: 3.6 Consensus size: 133
619216 ACATTGGCAC
* * * * * * *
619226 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA-----AA-ACCAATATC
* * *
619291 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGTTCGCCTTGAATCAGCATATT
60 GCTGGCCTTGAATCAGCACATTGG--CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
619356 GGCACCTTTAT
123 GGCACCTTTAT
* * **
619367 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCCTCTTAAGTCCAATATCG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----CCT-TTAAAACCAATATCG
619432 CTGGCCTTGAATCAGCACATTGGCACGTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
61 CTGGCCTTGAATCAGCACATTGGC-C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
*
619497 GCACCTTTGT
124 GCACCTTTAT
* * * *
619507 CTTTAAGACCAATTTCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGACCAATGTCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAAACCAATATCGCTGGC
*
619572 CTTGAATCAGCACATTGGCACCTTTAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
66 CTTGAATCAGCACATTGG--CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
619637 TTTAT
129 TTTAT
* *
619642 CTTTAAGACCAATGTCGCTGGCCCTGAATCAGCACATTGGCACCTTTAAAACCCAATATCGTTGG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAAA-CCAATATCGCTGG
* *
619707 TCGTGAATCA
65 CCTTGAATCA
619717 ACGTATTGGT
Statistics
Matches: 315, Mismatches: 25, Indels: 25
0.86 0.07 0.07
Matches are distributed among these distances:
135 129 0.41
136 22 0.07
137 1 0.00
138 1 0.00
139 1 0.00
140 114 0.36
141 41 0.13
145 3 0.01
146 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (133 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAAACCAATATCGCTGGC
CTTGAATCAGCACATTGGCCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
TAT
Found at i:620059 original size:53 final size:52
Alignment explanation
Indices: 619917--620060 Score: 173
Period size: 53 Copynumber: 2.7 Consensus size: 52
619907 CATTTTGGCA
* *
619917 TCTTCGTCATCTTTGAAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCAT
1 TCTTC-TCATCTTT-AAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACAT
* * ** *
619971 TCTTCTCATCTTCAAGA-CTAATGTCACTGACCGTGAATCAGCACATTGACAT
1 TCTTCTCATCTTTAA-ACCCAATGTCGTTGGCCGTGAATCAGCACATTGACAT
*
620023 TCTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAA
1 TC-TTCTCATCTTTAAACCCAATGTCGTTGGCCGTGAA
620061 AAGCAAAGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
52 34 0.46
53 35 0.47
54 5 0.07
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.33
Consensus pattern (52 bp):
TCTTCTCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACAT
Found at i:622854 original size:476 final size:471
Alignment explanation
Indices: 621929--623435 Score: 1698
Period size: 476 Copynumber: 3.2 Consensus size: 471
621919 TCCTTATTAG
* * * * *
621929 AAGAATGGGGAATAATATGACTATTCGTGTTTGTCTTATTTAAGAGGCAAACTTTGATTCCACTA
1 AAGAATGGGGATTAGTATGACTATTCGTGTTTATCTTATTTAAGAGACAAACTTTGATTCTA-TA
* *
621994 AAAATGGTTGAAAGAAATGCTTTTC-T-TGCACACCAAAGCATCCATGTCAAGTATCCTAACGAA
65 AAAATGGTTGAAAGAAATGCTTTTCTTATG-ACA-CAAAGCATCAATGTCATGTATCCTAACGAA
* * * *
622057 AGGAATGTGTTTCTAGTTCCTAATCTTGAAAAGAATGAAGACTGTTACGAGAATAAATGCTTGCC
128 AGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATG-AGACTGTTATGAGAATCAATGCTTGCC
* * * * * * * * *
622122 TTATTTAAGGGATGAATTTTAATTTAAAGGAAACTAGGGCAAAGAAATGATTTTCACGCAGAAGA
192 TTATTTAAGGGATGAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTACATGCAAAAGA
* * * *
622187 AAATCATCAATATCACTTATCCTAATGAGGAGTATATGTTTATAGTGCCAAATCATAAAGTGAAT
257 AAATCATCAATA-CATTTATCCT-AGGAGGAGAATATGTTTATAGTGCCAAATCACAAAGTGAAT
* * * * *
622252 GAAGTTCATTACTAGAATCCATGTTTGCCATAATTGAGGCACAAACTTAGACTTTGCAAAAATTG
320 GAAGATCATAACTAGAATCCATGTTTGTCACAATTGAGGCACAAACTTAGACTTTACAAAAATTG
* * * * * *
622317 GTGGGAAGAAAGCCTTTCTTACGCAACAAAAGCATCAATATCATGTATGCTTATGAGAAGACTAA
385 GTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAA
** *
622382 GTTTATAATGCGTAATCCTGAA
450 GTTTATGGTGCCTAATCCTGAA
* * *
622404 AAGAATGGAGATTAGTATGACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATGA
1 AAGAATGGGGATTAGTATGACTATTCGTGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-A
*
622469 AAAAT-GTCTGAAAGAAATGCTTTTCTTATGACACAATTGCATCAATGTCATGTATCCTAACGAA
65 AAAATGGT-TGAAAGAAATGCTTTTCTTATGACACAA-AGCATCAATGTCATGTATCCTAACGAA
* * * * *
622533 AGGAATGCGTTTTTGGTTCCCAATCATGAAAAGAATAGAGGCTGTTATGGGAATCAATGCTTGCC
128 AGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT-GAGACTGTTATGAGAATCAATGCTTGCC
** * * *
622598 TTATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAGGCAAACAAAGGATTTACATGCAAAAGA
192 TTATTTAAGGGATGAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTACATGCAAAAGA
* * *
622663 AAATCATGAATACCATTTGTCCTACGGAGGAGAATATGTTTACAGTGCCAAATCACAAAGTGAAT
257 AAATCATCAATA-CATTTATCCTA-GGAGGAGAATATGTTTATAGTGCCAAATCACAAAGTGAAT
* * * * * *
622728 GACGATCATGACTTGAATCCATGTTTGTCACAATTGAGGCACAAATTTAGGCTTTACGAAAATTG
320 GAAGATCATAACTAGAATCCATGTTTGTCACAATTGAGGCACAAACTTAGACTTTACAAAAATTG
* * *
622793 GTAGGAAGAAAGCCTTTCTTACGAAACCAATGCTTCAACATCGTGTATCCTTATTAGAAGACTAA
385 GTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAA
*
622858 GTTTATGGTGCCTTATCCTGAA
450 GTTTATGGTGCCTAATCCTGAA
** * * * * * * * * *
622880 TTGATTGGGGATTACTATGACCATTAGTATTTACCATATTTAAGCGACAGACTTTGATTCTATCA
1 AAGAATGGGGATTAGTATGACTATTCGTGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-A
* * * *
622945 AAAATGGTAGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCAATGTCATGTATCATAATGAAA
65 AAAATGGTTGAAAGAAATGCTTTTCTTATGACAC-AAAGCATCAATGTCATGTATCCTAACGAAA
* * * * * *
623010 AGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTATGAGAATCGACGCTTGTCA
129 GGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT-GAGACTGTTATGAGAATCAATGCTTGCCT
* * * * *
623075 AATTTAAGGGATGAAATTTGATTTTAAGGAAAA-AAGGCAAAGAAAAAATGTCCATGCAAGAGAA
193 TATTTAAGGGATGAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTACATGCAAAAGAA
* * * * * * *
623139 AATCATCAATAAACTTTATCGT-GATATG-GATTATGCGTTTATAGTGCCTAATCACAAAATGAA
258 AATCATCAATACA-TTTATCCTAG-GAGGAGAATAT--GTTTATAGTGCCAAATCACAAAGTGAA
* * * * * * *
623202 CGAAGATCAAAACTAGAATTCATGTCTGTCTC-ATTCGAGGCACGAACTTAGAATTTACAAAAAT
319 TGAAGATCATAACTAGAATCCATGTTTGTCACAATT-GAGGCACAAACTTAGACTTTACAAAAAT
* * * * * * *
623266 TGGTTGGAAAAAAACCTTTCTTACGAAACCAAAGCGTCAATATCGTGTAACATTATTAGAAAACT
383 TGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACT
*
623331 AAGTTTGTGGTGCCTAATCAC-GAA
448 AAGTTTATGGTGCCTAATC-CTGAA
* * * *
623355 AAAAATGGGGATTAGTATGACTACTCATGTTTATATTATTTAAGAGACAAACTTTGATTCTATAA
1 AAGAATGGGGATTAGTATGACTATTCGTGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-A
*
623420 AAAATAGTTGAAAGAA
65 AAAATGGTTGAAAGAA
623436 GTACTTTTAT
Statistics
Matches: 862, Mismatches: 155, Indels: 30
0.82 0.15 0.03
Matches are distributed among these distances:
473 6 0.01
474 9 0.01
475 334 0.39
476 506 0.59
477 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (471 bp):
AAGAATGGGGATTAGTATGACTATTCGTGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAA
AAATGGTTGAAAGAAATGCTTTTCTTATGACACAAAGCATCAATGTCATGTATCCTAACGAAAGG
AATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGAGACTGTTATGAGAATCAATGCTTGCCTTAT
TTAAGGGATGAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTACATGCAAAAGAAAAT
CATCAATACATTTATCCTAGGAGGAGAATATGTTTATAGTGCCAAATCACAAAGTGAATGAAGAT
CATAACTAGAATCCATGTTTGTCACAATTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGA
AGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTAAGTTTAT
GGTGCCTAATCCTGAA
Found at i:628818 original size:20 final size:21
Alignment explanation
Indices: 628771--628823 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
628761 GCCAATCACC
*
628771 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
628792 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
628812 TGTATCGATACA
1 TGTATCGATACA
628824 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:628829 original size:13 final size:13
Alignment explanation
Indices: 628811--628835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
628801 ACATTTGGTC
628811 ATGTATCGATACA
1 ATGTATCGATACA
628824 ATGTATCGATAC
1 ATGTATCGATAC
628836 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:628868 original size:20 final size:19
Alignment explanation
Indices: 628845--628883 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
628835 CTGTGCATTA
628845 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
628865 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
628884 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:631326 original size:13 final size:13
Alignment explanation
Indices: 631308--631332 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
631298 ATAAACCCTT
631308 TGTATCGATACAA
1 TGTATCGATACAA
631321 TGTATCGATACA
1 TGTATCGATACA
631333 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:637473 original size:20 final size:21
Alignment explanation
Indices: 637448--637500 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
637438 TTACAAGCCA
637448 ATGTATCGATACAAT-TTAG-G
1 ATGTATCGATACAATCTT-GTG
637468 ATGTATCGATAC-ATCTTGTG
1 ATGTATCGATACAATCTTGTG
637488 -TGTATCGATACAA
1 ATGTATCGATACAA
637501 ACAAGTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (21 bp):
ATGTATCGATACAATCTTGTG
Found at i:637663 original size:20 final size:21
Alignment explanation
Indices: 637638--637690 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
637628 TTACAAGCCA
637638 ATGTATCGATACAAT-TTGGG
1 ATGTATCGATACAATCTTGGG
637658 ATGTATCGATAC-ATCTTGGG
1 ATGTATCGATACAATCTTGGG
637678 -TGTATCGATACAA
1 ATGTATCGATACAA
637691 ACAAGTGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (21 bp):
ATGTATCGATACAATCTTGGG
Found at i:637738 original size:190 final size:193
Alignment explanation
Indices: 637311--637888 Score: 1027
Period size: 190 Copynumber: 3.0 Consensus size: 193
637301 CTGTTGGAAT
* *
637311 TGATTAGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTTTTTTAATGCAATCCCGTGTCAA
1 TGATTGGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTATTTTAATGCAATCCCGTGTCAA
637376 TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCGTTACTAGTCGTTA
66 TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCGTTA-TA-TCGTTA
*
637441 CAAGCCAATGTATCGATACAATTTAGGATGTATCGATACATCTTGTGTGTATCGATACAAACAAG
129 CAAGCCAATGTATCGATACAATTTGGGATGTATCGATACATCTTGTGTGTATCGATACAAACAAG
637506 TGATTGGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTATTTTAATGCAATCCCGTGTCAA
1 TGATTGGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTATTTTAATGCAATCCCGTGTCAA
637571 TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCG-T-T-TCGTTACA
66 TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCGTTATATCGTTACA
*
637633 AGCCAATGTATCGATACAATTTGGGATGTATCGATACATCTTGGGTGTATCGATACAAACAAG
131 AGCCAATGTATCGATACAATTTGGGATGTATCGATACATCTTGTGTGTATCGATACAAACAAG
637696 TGATTGGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTATTTTAATGCAATCCCGTGTCAA
1 TGATTGGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTATTTTAATGCAATCCCGTGTCAA
* *
637761 TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCTGTTACTAGTCTTTA
66 TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCGTTA-TA-TCGTTA
* *
637826 CTAGCCAATGTATCGATACATTTTGGGATGTATCGATACATCTTGTGTGTATCGATACAAACA
129 CAAGCCAATGTATCGATACAATTTGGGATGTATCGATACATCTTGTGTGTATCGATACAAACA
637889 GTTAAGGGTG
Statistics
Matches: 369, Mismatches: 9, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
190 185 0.50
191 1 0.00
192 1 0.00
193 1 0.00
194 1 0.00
195 180 0.49
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (193 bp):
TGATTGGTGGAGTATGTAGCCGTTATTGACTTGTTGGAGCTTATTTTAATGCAATCCCGTGTCAA
TGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCGTTATATCGTTACA
AGCCAATGTATCGATACAATTTGGGATGTATCGATACATCTTGTGTGTATCGATACAAACAAG
Found at i:637878 original size:19 final size:20
Alignment explanation
Indices: 637833--637884 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
637823 TTACTAGCCA
*
637833 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
637853 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
637873 -TGTATCGATACA
1 ATGTATCGATACA
637885 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:637984 original size:13 final size:13
Alignment explanation
Indices: 637966--637990 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
637956 ACATTTGGTC
637966 ATGTATCGATACA
1 ATGTATCGATACA
637979 ATGTATCGATAC
1 ATGTATCGATAC
637991 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:638023 original size:20 final size:19
Alignment explanation
Indices: 638000--638038 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
637990 CTGTGCATTA
* *
638000 TGTATTGATTCATTTGAAGG
1 TGTATCGATACATTT-AAGG
638020 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
638039 GTTTTGACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:639600 original size:475 final size:473
Alignment explanation
Indices: 638303--639846 Score: 1917
Period size: 474 Copynumber: 3.3 Consensus size: 473
638293 CCTAACAGAA
* * *
638303 GAGAATGTGTTTATAGCGCCTAATCACAAAGTGAATAAAGATCATTACTAGAATCCAAGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC
* **
638368 ACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTGTGAAAACA
66 ACAATTGAGGCACGAAATTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTAAGAAAACA
** *
638433 AAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTAACTAAT-TTTGAAAAGAAT
131 AAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTT-AAAAGAAT
*
638497 GGGGATTAGTATGACTATTAATGTTTGTCTTATTTAATAGACAAACTTTGATTTTGTCAAAAACG
195 GGGGATTAGTATGACTATTAATGTTTGTCTTATTTAATAGACAAACTTTGATTTTATCAAAAACG
* * *
638562 GTTGAAAGAAATGCTTTTCTTCCACACTAAAATG--TCAATGTCATGTATCCTAACGAAAAGAAT
260 GTTGAAAGAAATGCTTTTCTTGCACA-TCAAA-GCATCAATGTCATGTATCCTAATGAAAAGAAT
* * * * *
638625 ATGTGTCTGGTTCCTAATCATGAATAGAGTGGAGACTGTTACGAGAATCAATACTTGCCTTATTT
323 GTGTTTCTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT
* * * * * *
638690 AACGAATGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAATATTTAAAAGAAAAAGAAAATCA
388 AAGGGATGAACTTTGATTTTAAGGAAAATAGG-CAAAGAAAAGATTCACAAGCAAAAGAAAATCA
*
638755 TTAATATCATTTATCCTAATTGG
452 TCAATATCATTTATCCTAA-TGG
* * * *
638778 GAAAATGTGTTGATAGTGCC-AATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC
* * *** * *
638842 ACAATTAAGGCACGAAATTAGGCTTTACAAAAATTGGCAAGAAGAAAGCCTTTCTTAAGAAACCA
66 ACAATTGAGGCACGAAATTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTAAGAAAACA
* * * * * *
638907 ATGCTTCAATAACGTGTATCCTTATTAAAAGACTAAGTTTATGGTGCCTGATCCTTAAAAGAATG
131 AAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTTAAAAGAATG
* * * * *
638972 GGGATTAGTATGATTATTCACGTTTGTCATATGTAATAGACAAACTTTGATTTTATCAAAAACGG
196 GGGATTAGTATGACTATTAATGTTTGTCTTATTTAATAGACAAACTTTGATTTTATCAAAAACGG
* * * *
639037 TTGAAATAAATGCTTTTCTTGCAC-TCCAAAGCATTAATGTCATGTATCCAAATGAAACGAATGT
261 TTGAAAGAAATGCTTTTCTTGCACAT-CAAAGCATCAATGTCATGTATCCTAATGAAAAGAATGT
** * *
639101 GTTTCTCATTCCTAATCATGAAAAGAATGGAAACTGTTACTAGAATCAATGCTTGCCTTATTTAA
325 GTTTCTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA
* * *
639166 GGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGGTTCACATGCAAAATAAAATCATC
390 GGGATGAACTTTGATTTTAAGGAAAATAG-GCAAAGAAAAGATTCACAAGCAAAAGAAAATCATC
639231 AATATCATTTATCCTAATAGG
454 AATATCATTTATCCTAAT-GG
* * * *
639252 GAGAATATATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCAAGTTTGTA
1 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC
* * * * * *
639317 ACAATTGAGGCAGGAAGTTAGACTTTATAAAAATTGGTGGGAGGAAAGCCTTACTTACGAAATCA
66 ACAATTGAGGCACGAAATTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTAAGAAAACA
* * *
639382 AAGCATCAAGATCATGTAGT-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAAT
131 AAGCATCAATATCGTGTA-TCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTTAAAAGAAT
* * * * * * * * *
639446 GGGGATTAGAATGACTAATAATGTTTGT-TTGTTTAAAAGGCAAGCTATGA-TCTATCAAAAACT
195 GGGGATTAGTATGACTATTAATGTTTGTCTTATTTAATAGACAAACTTTGATTTTATCAAAAACG
* *
639509 GTTAAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAAATGTCATGTATCCTAATGAAAGGAAT
260 GTTGAAAGAAATGCTTTTCTTGC-ACATCAAAGCATC-AATGTCATGTATCCTAATGAAAAGAAT
* * * * * * *
639574 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTGTTACGAGAATCAATGATTGGCTTATTG
323 GTGTTTCTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT
*
639639 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTC-CAAGCAAAAGAAAATC
388 AAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGA-TTCACAAGCAAAAGAAAATC
639703 ATCAAT-TCTATTTATCCTAATGAG
451 ATCAATATC-ATTTATCCTAATG-G
* * * * * * *
639727 GAGAATGTTTTTATGGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTGGCC
1 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC
* * * * * *
639792 TC-ATTCGAGGCA-AAAACTTACACTTTTC-AAAATTAGTGGGAAGAAAGCCTTTCTT
66 ACAATT-GAGGCACGAAA-TTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTT
639847 GCTGTCGTAA
Statistics
Matches: 912, Mismatches: 140, Indels: 35
0.84 0.13 0.03
Matches are distributed among these distances:
472 2 0.00
473 36 0.04
474 457 0.50
475 412 0.45
476 5 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (473 bp):
GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC
ACAATTGAGGCACGAAATTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTAAGAAAACA
AAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTTAAAAGAATG
GGGATTAGTATGACTATTAATGTTTGTCTTATTTAATAGACAAACTTTGATTTTATCAAAAACGG
TTGAAAGAAATGCTTTTCTTGCACATCAAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTG
TTTCTGGTTCCTAATCATGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
GGATGAACTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATTCACAAGCAAAAGAAAATCATCAA
TATCATTTATCCTAATGG
Found at i:644184 original size:93 final size:88
Alignment explanation
Indices: 643897--644212 Score: 289
Period size: 87 Copynumber: 3.5 Consensus size: 88
643887 TGAGAAAAAT
* * **
643897 GATAAAGATGCCAATATGCTGATTCATGGCCAACGATATTAAACTT--GTGCCGATGTGCTAATT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAGGTG-C-ATGTGCTAATT
*
643960 CAAGGCCAGTGACATTGGACTTAAA
64 CAAGGCCAGTGACATTGGTCTTAAA
* * * * * * * *
643985 GA-CAAGGTGCCAATACGCCGATTCAAAGCTAGCGATATTGGGCTTATGCTG-ATGTGCTAATTC
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTA-GGTGCATGTGCTAATTC
**
644048 AAGGCCAGCAACATTGGTCTTAAA
65 AAGGCCAGTGACATTGGTCTTAAA
*** * * *
644072 GATGCCGGTGCTAATATGCTGATTCAAGGCCAACGATATTGGACTTCAAGGTGTCAATATGCTGA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT--AGGTG-C-ATGTGCTAA
* *
644137 TTCAAGGCCAGTGATATTAGGTTTTAAA
62 TTCAAGGCCAGTGACATT-GGTCTTAAA
* * * *
644165 GATAAAGGTGTCAATATGCTGGTTCAAGGCTAGCGATATTGGACTTAG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAG
644213 AAGAAGACGC
Statistics
Matches: 178, Mismatches: 40, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
87 67 0.38
88 35 0.20
89 3 0.02
90 3 0.02
91 2 0.01
92 22 0.12
93 46 0.26
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (88 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAGGTGCATGTGCTAATTCA
AGGCCAGTGACATTGGTCTTAAA
Found at i:644298 original size:28 final size:28
Alignment explanation
Indices: 644233--644305 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 28
644223 CACCAACTTG
644233 TGTGGGCTTTTGAAAAGGTTGCATCAACT
1 TGTGGGCTTTTG-AAAGGTTGCATCAACT
*
644262 TGTGTGCTTTTG-AAGGTTGCCA-CTAACT
1 TGTGGGCTTTTGAAAGGTTG-CATC-AACT
644290 TGTGGGC-TTTGAAAGG
1 TGTGGGCTTTTGAAAGG
644306 GGTGCCACCG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 12 0.31
28 16 0.41
29 11 0.28
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.36
Consensus pattern (28 bp):
TGTGGGCTTTTGAAAGGTTGCATCAACT
Found at i:644348 original size:27 final size:27
Alignment explanation
Indices: 644274--644360 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
644264 TGTGCTTTTG
* * *
644274 AAGGTTGCCACTAACTTGTGGGCTTTGAA
1 AAGGGTGCCACGAAATTGTGGGC-TT-AA
* *
644303 AGGGGTGCCACCG-ATTTGTGGGCTTAA
1 AAGGGTGCCA-CGAAATTGTGGGCTTAA
*
644330 AAGGGTGCCACGAAATTGTGGACTTAA
1 AAGGGTGCCACGAAATTGTGGGCTTAA
644357 AAGG
1 AAGG
644361 AAAAAAAGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.04
27 27 0.55
28 2 0.04
29 17 0.35
30 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (27 bp):
AAGGGTGCCACGAAATTGTGGGCTTAA
Found at i:644476 original size:36 final size:34
Alignment explanation
Indices: 644334--644488 Score: 202
Period size: 34 Copynumber: 4.5 Consensus size: 34
644324 GCTTAAAAGG
* * * *
644334 GTGCCACGAAATTGTGGACTTAAAAGGAAAAAAA
1 GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAAA
** *
644368 GTGCCACGGAGTTGTGGGCTTAAATGGAAAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAAA
*
644402 GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAAA
*
644436 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAAA
1 GTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAAAA
*
644471 GGTGCCATGGAGTTGTGG
1 -GTGCCACGGAGTTGTGG
644489 ACTTTTGAAG
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
34 79 0.73
35 14 0.13
36 15 0.14
ACGTcount: A:0.37, C:0.12, G:0.32, T:0.20
Consensus pattern (34 bp):
GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAAA
Found at i:644514 original size:28 final size:28
Alignment explanation
Indices: 644483--644561 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 28
644473 TGCCATGGAG
* * *
644483 TTGTGGACTTTTGAAGGTTGCCACTGGC
1 TTGTGGGCTTTTGAAGGGTGCCACTGAC
* *
644511 TTGTGGGCTTTGGAAAAGGGTGCCATTGAC
1 TTGTGGGCTTTTG--AAGGGTGCCACTGAC
644541 TTGTGGGCTTTTGACAGGGTG
1 TTGTGGGCTTTTGA-AGGGTG
644562 AGGAACATCT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
28 12 0.29
29 6 0.14
30 24 0.57
ACGTcount: A:0.15, C:0.14, G:0.37, T:0.34
Consensus pattern (28 bp):
TTGTGGGCTTTTGAAGGGTGCCACTGAC
Found at i:644544 original size:30 final size:30
Alignment explanation
Indices: 644466--644551 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
644456 TTAAAAAGAA
* * * * *
644466 AAAAAGGTGCCATGGAGTTGTGGACTTTTG
1 AAAAGGGTGCCATTGACTTGTGGGCTTTGG
* * *
644496 --AAGGTTGCCACTGGCTTGTGGGCTTTGG
1 AAAAGGGTGCCATTGACTTGTGGGCTTTGG
644524 AAAAGGGTGCCATTGACTTGTGGGCTTT
1 AAAAGGGTGCCATTGACTTGTGGGCTTT
644552 TGACAGGGTG
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
28 20 0.47
30 23 0.53
ACGTcount: A:0.20, C:0.14, G:0.35, T:0.31
Consensus pattern (30 bp):
AAAAGGGTGCCATTGACTTGTGGGCTTTGG
Found at i:646016 original size:10 final size:10
Alignment explanation
Indices: 646001--646087 Score: 70
Period size: 10 Copynumber: 8.5 Consensus size: 10
645991 TTTGTCGTTG
646001 TTTTTTTTTC
1 TTTTTTTTTC
*
646011 -TTTTTTTTG
1 TTTTTTTTTC
*
646020 TTTTTTTTTG
1 TTTTTTTTTC
646030 TTTGTTTTTTC
1 TTT-TTTTTTC
646041 TTTATTTTTTTC
1 -TT-TTTTTTTC
* *
646053 TTTTGTTTGC
1 TTTTTTTTTC
*
646063 TTTGTTTTGT-
1 TTT-TTTTTTC
*
646073 TTTTGTTTTC
1 TTTTTTTTTC
646083 TTTTT
1 TTTTT
646088 GTGGAGGACA
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
9 12 0.20
10 28 0.46
11 11 0.18
12 9 0.15
13 1 0.02
ACGTcount: A:0.01, C:0.06, G:0.09, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:646035 original size:33 final size:34
Alignment explanation
Indices: 645988--646087 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 34
645978 CATCCGGACC
645988 TTTTTTGTCGTTGTTTTTTTTTCTTTTTTT-TGTTT-
1 TTTTTTGT--TTGTTTTTTTTTCTTTTTTTCT-TTTG
*
646023 TTTTTTGTTTGTTTTTTCTTTATTTTTTTCTTTTG
1 TTTTTTGTTTGTTTTTT-TTTCTTTTTTTCTTTTG
646058 TTTGCTTTGTTTTGTTTTTGTTTTCTTTTT
1 TTT--TTTG-TTTGTTTTT-TTTTCTTTTT
646088 GTGGAGGACA
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
33 9 0.16
34 13 0.23
35 12 0.21
37 4 0.07
38 17 0.30
39 1 0.02
ACGTcount: A:0.01, C:0.06, G:0.11, T:0.82
Consensus pattern (34 bp):
TTTTTTGTTTGTTTTTTTTTCTTTTTTTCTTTTG
Found at i:646071 original size:42 final size:42
Alignment explanation
Indices: 646003--646085 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
645993 TGTCGTTGTT
* * *
646003 TTTTTTTCTTTTTTTTGTTTTTTTTTGTTTGTT-TTTTCTTTA
1 TTTTTTTCTTTTGTTTGCTTTGTTTTGTTT-TTGTTTTCTTTA
646045 TTTTTTTCTTTTGTTTGCTTTGTTTTGTTTTTGTTTTCTTT
1 TTTTTTTCTTTTGTTTGCTTTGTTTTGTTTTTGTTTTCTTT
646086 TTGTGGAGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.05
42 35 0.95
ACGTcount: A:0.01, C:0.06, G:0.10, T:0.83
Consensus pattern (42 bp):
TTTTTTTCTTTTGTTTGCTTTGTTTTGTTTTTGTTTTCTTTA
Found at i:666479 original size:477 final size:472
Alignment explanation
Indices: 665012--668445 Score: 3666
Period size: 476 Copynumber: 7.2 Consensus size: 472
665002 GTTTCCACGA
* * * * *
665012 AAAAGAAAATCATCAAT-TCCATTTATCCCAATAAGGAGAATCTGTTTATAGTGCTTAATCACAA
1 AAAAGAAAATCATCAATAT-CATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * * * * *
665076 AATGAAT-AGAGATCATTACTAGAATCTATGTTTGCCTCATTTGAGGTAGGAATTTAAACTTCT-
65 AGTGAATGA-AGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGACTT-TA
* *
665139 CAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATC-TGTATCCTTATGA
128 CAAAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGA
* * * * * ** * *
665203 GAAGACTAAG-TTAGGGTGCCAAATCTAAAAAAAAAAAGGGATTAGTATAACTATTTATGTTTGA
193 GAAGACTATGTTTATGGTGCCTAATCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTG-
* * * * * *
665267 T-TTATTTAAGAGATAAACTTTGATTCCATCAAAGACGATTGAAAGAAATGCTTTTCTTGCGACA
256 TCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATACTTTTCTTGCGACA
* ** * * * * *
665331 ACAAAGTGTCAATGTTATGTACCCTAATGAAAGGAATTTGTTTTTGGTTTCTAATCTTGAAAAGA
321 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
** * * * * * * * * * *
665396 ATAAAGACTATTACGAGAATCAATGCTTGCCTTACTTAAGAGATGAAGTTTGATTTTAAGAAAAA
386 ATGGAGACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATGAA-TTTTAATTTAAGGAAAA
*
665461 TA--CAAAGAAAAGATTTTCATGT
450 TAGGCAAAGAAAA-ATTTTCATGC
*** * * *
665483 AAAAGAATGCCATCAATATCATTTATCCTAATT-ACGAAAATGTGTTTATAGTGCGTAATCACAA
1 AAAAGAAAATCATCAATATCATTTATCCT-ATTGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * ** * *
665547 AATGAATGAAGATCATTACTAGAATCCATATTTGTCACCTTTAAGGCACGAACTTAGACTTTACA
65 AGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACA
* *** * * * *
665612 AAAATTGGTAGGAGGAAAGCCACACTTGCGAAACCAATGCATCAATATTGTGTAGCCTTATAAGA
130 AAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* ** * * *
665677 AGACAATGTTTACAGTGCCTAATGCTGAAAAGAAAGGGGATTAGAATGGCTATTCATGTTTGTCT
195 AGACTATGTTTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* * * **
665742 TATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTTGAAA-AAATGCTTTTCTTATGACACCA
259 TATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATACTTTTCTTGCGACACCA
*
665806 AAGCATCAATGTCAGGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
324 AAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * * *
665871 GAGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGAGATGAAATTTGATTTTAAGGAAAATAG
389 GAGACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATG-AATTTTAATTTAAGGAAAATAG
* * *
665936 TGTAAAGAAAAGATTTTTATGT
453 -GCAAAGAAAA-ATTTTCATGC
* * * * *
665958 AAAAGAATACCATCAATATCATTTATCCTAATT-AGGAAAATGTGTTTATAGCGCCTAATCACCA
1 AAAAGAAAATCATCAATATCATTTATCCT-ATTGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * **
666022 ATTGAATGAATATCATTACTGGAATCCATGTTTATCACCTTTGAGGCATGAACTTAGACTTTACA
65 AGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACA
* * * * * *
666087 AAAATTGGTGGCAGGAAAGCCTTACTTACGAAACCAATGCGTCAATATCGTGTAGCCTTATGAGA
130 AAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* * * * *
666152 AGACTATGTTTTATGGTACTTAATGCTGAAAAGAATGGGGATTAGAATGGCTATTCATGTTTATC
195 AGACTATG-TTTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
*
666217 TTATTTAAGAGACAAACTTTTATTCTATAAAAAACGGTTGAAAGAAATACTTTTCTTGCGACACC
258 TTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATACTTTTCTTGCGACACC
* *
666282 AAAGCATCACTGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAGGAAT
323 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* *
666347 GGAGACTGTTACAAGAATCATTTCTTGTCATATTTAAGGGATGAACTTTAACTTTAAGGAAAATA
388 GGAGACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATGAATTTTAA-TTTAAGGAAAAT-
666412 AGGCAAAGAAATAATTTTCATGC
451 AGGCAAAGAAA-AATTTTCATGC
* *
666435 AAAAGAAAATCATCAATATCATTTATCTTATTGCA-GAGAATGTGTTTATAGTGCCTAATTACAA
1 AAAAGAAAATCATCAATATCATTTATCCTATTG-AGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * ** *
666499 AGTGAATGAAGATCATTACAAGAATCCAAGTTTGTCAAAATTGAGGCATGAACTTAGGGTTTGCA
65 AGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACA
* * * *
666564 AAAATTGGTGGGAGGATAGCTTTTCTTGTGAAACCAAAGCATCAATATTGTGTATCCTTATGAGA
130 AAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
*
666629 AGACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
195 AGACTATGTTTATGGTGCCTAATC-TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
*
666694 TATTTAAGAGACAAACTTTGATTCTATCAAAAAA-TG-TGAAAAGAAA-AGCTTTTCTTGCGGA-
259 TATTTAAGAGACAAACTTTGATTCTAT-AAAAAACGGTTG-AAAGAAATA-CTTTTCTTGC-GAC
* * * * *
666755 TCCAAAGCATAAATGTCATGTATCCTAATGAACA-GAATGTGTTCTTAGTTCCCAATCTTGTAAA
320 ACCAAAGCATCAATGTCATGTATCCTAATGAA-AGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
** * ** * * *
666819 GAATGGCAG-CTGTTGTGGGAATTGTTTCTTGTCATATTTGAGGGATAAATTTTTATTTATAGGA
384 GAATGG-AGACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATGAATTTTAATTTA-AGGA
* *
666883 AAATAAGGCAAAGAAAAGTTTTCCAAGC
447 AAAT-AGGCAAAGAAAAATTTT-CATGC
* * * * * *
666911 AAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGATTGTGTTTACAGTGCCTAATCATAAC
1 AAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
666976 GTGAATGAAGATCATTACTAGAATCTAAGTTTGTCGCAATTGAAGCATAAACTTAAGACTTTACA
66 GTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTT-AGACTTTACA
** * *
667041 AAAATTTGG-GGGAAAAAAACCTTTCTTGCGAAACCAAAGCATCAGCGTCAATATCGTGTATTCT
130 AAAA-TTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAG---CA---TCAATATCGTGTATCCT
* * **
667105 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATTACTATTTTTG
188 TATGAGAAGACTATGTTTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGACTATTCATG
* *** * *
667170 TTTTGTCTTATTTGAA-AGACAAACTTTGATTCTATTAAAAATAATGGAAATAAA-AGCTTTTCT
252 -TTTGTCTTATTT-AAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATA-CTTTTCT
* * * *
667233 TGCGACACCAAAGAATCAAGGTCATGTATCCTAATG-AAGAGAATATGTTCTTGGTTCCCAATCT
314 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCT
* * * *
667297 TGAAAAGAATAGAGACTGTTACGAGAATCGTTTCTTGTCATATTTAAGGGCT-AAATTTAATTTA
378 TGAAAAGAATGGAGACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATGAATTTTAATTT-
*
667361 AAGGAAAATAGGGCAAAGAAAAGTTTTCCATGC
442 AAGGAAAATA-GGCAAAGAAAAATTTT-CATGC
* * * *
667394 AAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCCAATCGCAAA
1 AAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* *
667459 GTGAATGAAGATCATTACTAG-ATCCATGTTTGTCACAATTGAGGCA-CAGACTTAGTCTTTACA
66 GTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGA-ACTTAGACTTTACA
** * * * * * *
667522 AAAATTAATAGGATGAAAGCCTTTCTTGGGAAACCAAAGCTTTAATATCATGTATCCTTATGAGA
130 AAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* ** * **** * ** *
667587 GGACTAACTCTACAACGCCTAATACTAAAAAAGAATAAGGATTAGTATGACTATTCATGTTTGTG
195 AGACTATGTTTATGGTGCCTAAT-CT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * *
667652 TTATTTTACAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGTGACACC
258 TTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATACTTTTCTTGCGACACC
* * * * *
667717 AAAGCATCAATGTCATGTATCTTAATGAATGGAATTTGTTTTTGGTTCCTAAT-TATGAAAAGAG
323 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCT-TGAAAAGAA
* * * * * *
667781 TGGAGACTATGACGAGAATCAGTGT-TTGCCTTATTTAAGGGGTGAATTTTAATTTTAAGGAAAA
387 TGGAGACTGTTACGAGAATCA-TTTCTTGTCATATTTAAGGGATGAATTTTAA-TTTAAGGAAAA
** *
667845 TAGAATAAAGAAAAGATTTCCATGC
450 TAG-GCAAAGAAAA-ATTTTCATGC
** *
667870 AAAAAGAAAATTGTCAATATCATTTAT-CTGATTGAGAAGAATGTGTTTATAGTGCCTAATCACA
1 -AAAAGAAAATCATCAATATCATTTATCCT-ATTGAGGAGAATGTGTTTATAGTGCCTAATCACA
* **
667934 AAGTGAATGAAGATCATTACTAGAATCCATGTTCGTCACAATTGAGGGTTGAACTTAGACTTTAC
64 AAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTAC
* *** * * *
667999 AAAAATTGGTGGGAGAAAAGCCTAAGTTGCGAGACCAAAGCATCAATATCATGTAGT-CTTATAA
129 AAAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTA-TCCTTATGA
*
668063 GAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGTG-TTAGTATGACTATTCATGTTTG
193 GAAGACTATGTTTATGGTGCCTAAT-CTGAAAAGAATGGG-GATTAGTATGACTATTCATGTTTG
* * * * *
668127 TCTTATTTAAAAGAC-AACTTTGTTTCTATCAAAAAACGATGGAAAG-AATAGCTTTTCTTGCAA
256 TCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAACGGTTGAAAGAAATA-CTTTTCTTGCGA
* * *
668190 CACCAAAGCATCAGTGTCATGTATCCTAATG-AAGAGAATATG-TCTTGGTTCCCAATCTTGAAA
319 CACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * * *
668253 AGAATGGAGACTGTTACGAGAATCATTTTTTATCATATTTATGGGATGAATTTTTATTCGAAGGA
383 AGAATGGAGACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATGAATTTTAATT-TAAGGA
668318 AAATAGGCCAAA-AAAATGATTTTCATGCC
447 AAATAGG-CAAAGAAAA--ATTTTCATG-C
* * *
668347 AAAA-AAAATCATCACTATCTTTTATCCTATTGAAGG-GAATGTGTTTATAGTGCCCAATCACAA
1 AAAAGAAAATCATCAATATCATTTATCCTATTG-AGGAGAATGTGTTTATAGTGCCTAATCACAA
668410 AGTGAATGAAGATCATTACTAGAATCCATGTTTGTC
65 AGTGAATGAAGATCATTACTAGAATCCATGTTTGTC
668446 TAGTTGCAAC
Statistics
Matches: 2524, Mismatches: 362, Indels: 150
0.83 0.12 0.05
Matches are distributed among these distances:
470 1 0.00
471 142 0.06
472 155 0.06
473 82 0.03
474 4 0.00
475 483 0.19
476 588 0.23
477 543 0.22
478 112 0.04
479 2 0.00
480 4 0.00
481 39 0.02
482 27 0.01
483 199 0.08
484 140 0.06
485 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
AAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
GTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACAA
AAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
GACTATGTTTATGGTGCCTAATCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATACTTTTCTTGCGACACCAAA
GCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
GACTGTTACGAGAATCATTTCTTGTCATATTTAAGGGATGAATTTTAATTTAAGGAAAATAGGCA
AAGAAAAATTTTCATGC
Found at i:671614 original size:20 final size:20
Alignment explanation
Indices: 671589--671662 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 20
671579 AATTAACTAG
671589 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
* * * * *
671609 ATGTATCTACACATTCATAC
1 ATGTATCGATACATTGAAAA
* *
671629 ATGTATCAATAAATTGAAAA
1 ATGTATCGATACATTGAAAA
*
671649 ATATATCGATACAT
1 ATGTATCGATACAT
671663 CTAGGTAAAA
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:671692 original size:30 final size:30
Alignment explanation
Indices: 671652--671715 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
671642 TTGAAAAATA
*
671652 TATCGATACATCTAGGTAAAAAATAGAATG
1 TATCAATACATCTAGGTAAAAAATAGAATG
*
671682 TATCAATACATCTGGGTAAAAAATAGAATG
1 TATCAATACATCTAGGTAAAAAATAGAATG
671712 TATC
1 TATC
671716 GAAACATGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.28
Consensus pattern (30 bp):
TATCAATACATCTAGGTAAAAAATAGAATG
Found at i:672487 original size:32 final size:32
Alignment explanation
Indices: 672443--672525 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
672433 CATTGGTTTC
672443 AGAAGGCTTGCCACCAACTTATGTAAGCTTTAG
1 AGAAGG-TTGCCACCAACTTATGTAAGCTTTAG
* **
672476 AGAAGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGTTGCCACCAACTTATGTAAGCTTTAG
* * *
672508 A-AGGGTTACCACTAACTT
1 AGAAGGTTGCCACCAACTT
672526 GTGGGCTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
31 14 0.32
32 24 0.55
33 6 0.14
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (32 bp):
AGAAGGTTGCCACCAACTTATGTAAGCTTTAG
Found at i:672528 original size:31 final size:29
Alignment explanation
Indices: 672469--672540 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
672459 ACTTATGTAA
* *
672469 GCTTTAGAGAAGGTTGCCACCAACTTGTGTGG
1 GCTTTAGA-AGGGTTACCACCAAC-T-TGTGG
*
672501 GCTTTAGAAGGGTTACCACTAACTTGTGG
1 GCTTTAGAAGGGTTACCACCAACTTGTGG
*
672530 GCTTTAAAAGG
1 GCTTTAGAAGG
672541 ATGCCACTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 15 0.42
30 1 0.03
31 12 0.33
32 8 0.22
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (29 bp):
GCTTTAGAAGGGTTACCACCAACTTGTGG
Found at i:672556 original size:28 final size:28
Alignment explanation
Indices: 672469--673050 Score: 360
Period size: 28 Copynumber: 20.4 Consensus size: 28
672459 ACTTATGTAA
* *
672469 GCTTTAGAGAAGGTTGCCACCAACTTGTGTGG
1 GCTTTA-A-AAGGATGCCACTAAC-T-TGTGG
* * *
672501 GCTTTAGAAGGGTTACCACTAACTTGTGG
1 GCTTTA-AAAGGATGCCACTAACTTGTGG
* *
672530 GCTTTAAAAGGATGCCACTGATTTGTGG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
** * *
672558 GCTTCGAAAGGGTGCCACTAACCTGTGG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
** * *
672586 GCTTCGAAAGGGTGCCACTAACTTGTAG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
* * * *
672614 GCTTTAGAAGGATGCTATTGACTTGTGG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
* * * * *
672642 GCTTTGAAAGGGTGCATACTGACTTGTAG
1 GCTTTAAAAGGATGC-CACTAACTTGTGG
* * * * *
672671 GCTTTGCGAGAGGTTACCA-TCGACTTGTGTGG
1 GCTTT--AAAAGGATGCCACT-AAC-T-TGTGG
* *
672703 GCTTT-AAGGGGTGCCACTAACTTGTGG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
* * **
672730 GCTTTGAGAGAGGTTGCCACCGACTTTTGTGG
1 GCTTT-A-AAAGGATGCCACTAAC--TTGTGG
* * **
672762 GCTTTGAAAGGATGCAACCGACTTGTGTGG
1 GCTTTAAAAGGATGCCACTAAC-T-TGTGG
* * *
672792 GCTTTGAGAAGAATGCCCCTAACTTGTGG
1 GCTTT-AAAAGGATGCCACTAACTTGTGG
*
672821 GCTTTGAGAAGGATGCCACTAACTTGTGG
1 GCTTT-AAAAGGATGCCACTAACTTGTGG
* * *
672850 GCTTTGAAAAGGATGCCACTGACTTATAG
1 GCTTT-AAAAGGATGCCACTAACTTGTGG
*
672879 GCTTT---A--A----ACTGACTTGTGG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
* * * *
672898 GCTTTGAAAGGATGCCACTGACATGTGC
1 GCTTTAAAAGGATGCCACTAACTTGTGG
*
672926 GCTTTGAAAGGATGCCACTAACTTGTGG
1 GCTTTAAAAGGATGCCACTAACTTGTGG
*
672954 GCTTTGAGAAGGATGCCACTAACTTGTGG
1 GCTTT-AAAAGGATGCCACTAACTTGTGG
* ** *
672983 GCTTTGAAAGGATGAAACTAACTTGTGA
1 GCTTTAAAAGGATGCCACTAACTTGTGG
673011 GCTTTAGAAAGG-TGCCACTAACTTGTGG
1 GCTTTA-AAAGGATGCCACTAACTTGTGG
673039 GCTTTGAAAAGG
1 GCTTT-AAAAGG
673051 GTCGTATTGA
Statistics
Matches: 445, Mismatches: 79, Indels: 56
0.77 0.14 0.10
Matches are distributed among these distances:
19 15 0.03
22 1 0.00
23 1 0.00
24 1 0.00
25 1 0.00
27 10 0.02
28 184 0.41
29 133 0.30
30 41 0.09
31 30 0.07
32 28 0.06
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
GCTTTAAAAGGATGCCACTAACTTGTGG
Found at i:672587 original size:56 final size:56
Alignment explanation
Indices: 672469--673047 Score: 455
Period size: 56 Copynumber: 10.2 Consensus size: 56
672459 ACTTATGTAA
* * * * *
672469 GCTTTAGAGAAGGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTACCACTAACTTGTGG
1 GCTTT-GA-AAGGATGCCACTAAC-T-TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGG
* * * * * *
672530 GCTTTAAAAGGATGCCACTGATTTGTGGGCTTCGAAAGGGTGCCACTAACCTGTGG
1 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG
* * * * * *
672586 GCTTCGAAAGGGTGCCACTAACTTGTAGGCTTT-AGAAGGATGCTATTGACTTGTGG
1 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTAACTTGTGG
* * * * * * * *
672642 GCTTTGAAAGGGTGCATACTGACTTGTAGGCTTTGCGAGAGGTTACCA-TCGACTTGTGTGG
1 GCTTTGAAAGGATGC-CACTAACTTGTGGGCTTT--GAAAGGATGCCACT-AAC-T-TGTGG
* * * **
672703 GCTTT-AAGGGGTGCCACTAACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTTTGTGG
1 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGA-A-AGGATGCCACTAAC--TTGTGG
* ** * *
672762 GCTTTGAAAGGATGCAACCGACTTGTGTGGGCTTTGAGAAGAATGCCCCTAACTTGTGG
1 GCTTTGAAAGGATGCCACTAAC-T-TGTGGGCTTTGA-AAGGATGCCACTAACTTGTGG
* * *
672821 GCTTTGAGAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACTGACTTATAG
1 GCTTTGA-AAGGATGCCACTAACTTGTGGGCTTTG-AAAGGATGCCACTAACTTGTGG
* * * *
672879 GCTTT---A--A----ACTGACTTGTGGGCTTTGAAAGGATGCCACTGACATGTGC
1 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG
672926 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTAACTTGTGG
1 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTAACTTGTGG
** *
672983 GCTTTGAAAGGATGAAACTAACTTGTGAGCTTTAGAAAGG-TGCCACTAACTTGTGG
1 GCTTTGAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTAACTTGTGG
673039 GCTTTGAAA
1 GCTTTGAAA
673048 AGGGTCGTAT
Statistics
Matches: 424, Mismatches: 66, Indels: 61
0.77 0.12 0.11
Matches are distributed among these distances:
47 23 0.05
48 17 0.04
50 1 0.00
52 2 0.00
54 1 0.00
55 1 0.00
56 118 0.28
57 79 0.19
58 36 0.08
59 71 0.17
60 36 0.08
61 25 0.06
62 14 0.03
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (56 bp):
GCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG
Found at i:672728 original size:29 final size:31
Alignment explanation
Indices: 672693--672874 Score: 175
Period size: 29 Copynumber: 6.1 Consensus size: 31
672683 GTTACCATCG
* *
672693 ACTTGTGTGGGCTTT-A-AGGGGTGCCACTA
1 ACTTGTGTGGGCTTTGAGAAGGATGCCACTA
* **
672722 AC-T-TGTGGGCTTTGAGAGAGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAGA-AGGATGCCACTA
* * **
672752 ACTTTTGTGGGCTTTGA-AAGGATGCAACCG
1 ACTTGTGTGGGCTTTGAGAAGGATGCCACTA
* *
672782 ACTTGTGTGGGCTTTGAGAAGAATGCCCCTA
1 ACTTGTGTGGGCTTTGAGAAGGATGCCACTA
672813 AC-T-TGTGGGCTTTGAGAAGGATGCCACTA
1 ACTTGTGTGGGCTTTGAGAAGGATGCCACTA
* *
672842 AC-T-TGTGGGCTTTGAAAAGGATGCCACTG
1 ACTTGTGTGGGCTTTGAGAAGGATGCCACTA
672871 ACTT
1 ACTT
672875 ATAGGCTTTA
Statistics
Matches: 130, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
27 10 0.08
28 2 0.02
29 56 0.43
30 38 0.29
31 12 0.09
32 12 0.09
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.29
Consensus pattern (31 bp):
ACTTGTGTGGGCTTTGAGAAGGATGCCACTA
Found at i:672784 original size:89 final size:89
Alignment explanation
Indices: 672525--673020 Score: 272
Period size: 89 Copynumber: 5.8 Consensus size: 89
672515 ACCACTAACT
* * * * * * * *
672525 TGTGGGCTTT-AAAAGGATGCCACTGATTTGTGGGCTTCGA-AAGGGTGCCACTAACCTGTGGGC
1 TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACCAACTTGTGGGC
* * * **
672588 TTCG-AAAGGGTGCCACTAAC-T-
66 TTTGAAAAGGATGCAACCGACTTG
* * * * * * * ** *
672609 TGTAGGCTTT-AGAAGGATGCTATTGACTTGTGGGCTTTGA-AAGGGTGCATACTGACTTGTAGG
1 TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGAAGGATGC-CACCAACTTGTGGG
* * * * * *
672672 CTTTGCGAGAGGTTACCATCGACTTG
65 CTTTG-AAAAGGATGCAACCGACTTG
* ** * *
672698 TGTGGGCTTT-A-AGGGGTGCCACTAACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTTTGTG
1 TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGA-AGGATGCCACCAAC--TTGTG
672761 GGCTTTG-AAAGGATGCAACCGACTTG
63 GGCTTTGAAAAGGATGCAACCGACTTG
* *
672787 TGTGGGCTTTGAGAAGAATGCCCCTAACTTGTGGGCTTTGAGAAGGATGCCACTAACTTGTGGGC
1 TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACCAACTTGTGGGC
* *
672852 TTTGAAAAGGATGCCACTGAC-T-
66 TTTGAAAAGGATGCAACCGACTTG
* * * ** * *
672874 TATAGGCTTT------AA----ACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACATGTGCGC
1 TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACCAACTTGTGGGC
* **
672928 TTTG-AAAGGATGCCACTAAC-T-
66 TTTGAAAAGGATGCAACCGACTTG
* ** * *
672949 TGTGGGCTTTGAGAAGGATGCCACTAACTTGTGGGCTTTGA-AAGGATGAAACTAACTTGTGAGC
1 TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACCAACTTGTGGGC
673013 TTTAGAAA
66 TTT-GAAA
673021 GGTGCCACTA
Statistics
Matches: 330, Mismatches: 58, Indels: 45
0.76 0.13 0.10
Matches are distributed among these distances:
75 24 0.07
76 24 0.07
77 17 0.05
81 3 0.01
84 42 0.13
85 53 0.16
86 1 0.00
87 20 0.06
88 37 0.11
89 54 0.16
90 18 0.05
91 37 0.11
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (89 bp):
TGTGGGCTTTGAGAAGAATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACCAACTTGTGGGC
TTTGAAAAGGATGCAACCGACTTG
Found at i:672969 original size:104 final size:106
Alignment explanation
Indices: 672787--672987 Score: 307
Period size: 104 Copynumber: 1.9 Consensus size: 106
672777 AACCGACTTG
* * *
672787 TGTGGGCTTTGAGAAGAATGCCCCTAACTTGTGGGCTTTGAGAAGGATGCCACTAACTTGTGGGC
1 TGTGGGCTTTGAGAAGAATGCCACTAACATGTGCGCTTTGAGAAGGATGCCACTAACTTGTGGGC
*
672852 TTTGAAAAGGATGCCACTGACTTATAGGCTTTAAACTGACT
66 TTTGAAAAGGATGCCACTAACTTATAGGCTTTAAACTGACT
* *
672893 TGTGGGCTTTGA-AAGGATGCCACTGACATGTGCGCTTTGA-AAGGATGCCACTAACTTGTGGGC
1 TGTGGGCTTTGAGAAGAATGCCACTAACATGTGCGCTTTGAGAAGGATGCCACTAACTTGTGGGC
* * *
672956 TTTGAGAAGGATGCCACTAACTTGTGGGCTTT
66 TTTGAAAAGGATGCCACTAACTTATAGGCTTT
672988 GAAAGGATGA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
104 51 0.59
105 23 0.27
106 12 0.14
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (106 bp):
TGTGGGCTTTGAGAAGAATGCCACTAACATGTGCGCTTTGAGAAGGATGCCACTAACTTGTGGGC
TTTGAAAAGGATGCCACTAACTTATAGGCTTTAAACTGACT
Found at i:673033 original size:85 final size:85
Alignment explanation
Indices: 672890--673050 Score: 252
Period size: 85 Copynumber: 1.9 Consensus size: 85
672880 CTTTAAACTG
** * *
672890 ACTTGTGGGCTTTGAAAGGATGCCACTGACATGTGCGCTTTGAAAGGATGCCACTAACTTGTGGG
1 ACTTGTGGGCTTTGAAAGGATGAAACTAACATGTGAGCTTTGAAAGGATGCCACTAACTTGTGGG
*
672955 CTTTGAGAAGGATGCCACTA
66 CTTTGAAAAGGATGCCACTA
*
672975 ACTTGTGGGCTTTGAAAGGATGAAACTAACTTGTGAGCTTTAGAAAGG-TGCCACTAACTTGTGG
1 ACTTGTGGGCTTTGAAAGGATGAAACTAACATGTGAGCTTT-GAAAGGATGCCACTAACTTGTGG
673039 GCTTTGAAAAGG
65 GCTTTGAAAAGG
673051 GTCGTATTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
85 63 0.91
86 6 0.09
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (85 bp):
ACTTGTGGGCTTTGAAAGGATGAAACTAACATGTGAGCTTTGAAAGGATGCCACTAACTTGTGGG
CTTTGAAAAGGATGCCACTA
Found at i:674517 original size:28 final size:28
Alignment explanation
Indices: 674427--674819 Score: 276
Period size: 28 Copynumber: 13.6 Consensus size: 28
674417 CACCAACTTA
* *
674427 TGTGGGCTTTAGAGAAGGTTGCCAC-AACTT
1 TGTGGGCTTTA-A-AAGGATGCCACTGAC-T
* * *
674457 GTGTGGGCTTTAGAAGGGTTGCCACTAACT
1 -TGTGGGCTTTA-AAAGGATGCCACTGACT
*
674487 TGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
674515 TGTGGGCTTCAAAAGGGTGCCAC-AATCT
1 TGTGGGCTTTAAAAGGATGCCACTGA-CT
* * *
674543 TGTGGGCTTTGAGAAGG-GGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
674571 TGTAGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * *
674599 TGTGGGCTTTGAGAGAGGTTGGCACCT-ATTTT
1 TGTGGGCTTT-A-AAAGGATGCCA-CTGA--CT
674631 TGTGGGCTTT--AAGGAGTGCCACTGACT
1 TGTGGGCTTTAAAAGGA-TGCCACTGACT
* *
674658 TGTGGGCTTTAAGAGAGGTTGCCATTGACTT
1 TGTGGGCTTTAA-A-AGGATGCCACTGAC-T
* * *
674689 GTGTGGGCTTTGAGAGGATGCAACTGACT
1 -TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
674718 TGTGAGCTTTGAGAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
674747 TATGGGCTTTGAAAGGATGCCACTGAAT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
674775 TGTGAGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
674803 TGTGGGCTTTGAAAAGG
1 TGTGGGCTTT-AAAAGG
674820 GTCGTATTGA
Statistics
Matches: 290, Mismatches: 52, Indels: 42
0.76 0.14 0.11
Matches are distributed among these distances:
27 16 0.06
28 139 0.48
29 50 0.17
30 41 0.14
31 22 0.08
32 22 0.08
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:674857 original size:12 final size:13
Alignment explanation
Indices: 674826--674910 Score: 50
Period size: 14 Copynumber: 6.3 Consensus size: 13
674816 AAGGGTCGTA
674826 TTGACGAAAATTTC
1 TTGAC-AAAATTTC
*
674840 TTGACAAAGTTT-
1 TTGACAAAATTTC
674852 TTGACAAACA-TTC
1 TTGACAAA-ATTTC
*
674865 TCGACAAAAAGTTT-
1 TTGAC-AAAA-TTTC
* *
674879 TTGACGATATTTTC
1 TTGAC-AAAATTTC
*
674893 TTGACAACCATTTC
1 TTGACAA-AATTTC
674907 TTGA
1 TTGA
674911 GAAATGGCGA
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
12 10 0.19
13 15 0.28
14 27 0.50
15 2 0.04
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (13 bp):
TTGACAAAATTTC
Found at i:676230 original size:32 final size:33
Alignment explanation
Indices: 676183--676248 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
676173 CATTTGGTTT
*
676183 AGAAGGGTTGCCACCAACTTATGTGGGCTTTAG
1 AGAAGGGTTACCACCAACTTATGTGGGCTTTAG
*
676216 AGAA-GGTTACCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTACCACCAACTTATGTGGGCTTTAG
676248 A
1 A
676249 AGGGTTGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 27 0.87
33 4 0.13
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTACCACCAACTTATGTGGGCTTTAG
Found at i:676295 original size:28 final size:28
Alignment explanation
Indices: 676180--676840 Score: 198
Period size: 28 Copynumber: 23.2 Consensus size: 28
676170 CGACATTTGG
* *
676180 TTTAGAAGGGTTGCCACCAACTTATGTGGGC
1 TTTAAAAGGG-TGCCACTAAC-T-TGTGGGC
* * *
676211 TTTAGAGAAGGTTACCACCAACTTGTGTGGGC
1 TTTA-A-AAGGGTGCCACTAAC-T-TGTGGGC
* *
676243 TTTAGAAGGGTTGCCACTGACTTGTGGGC
1 TTTAAAAGGG-TGCCACTAACTTGTGGGC
* * * *
676272 TTTAAAAGGATGCCATTGATTTGTGGGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
* *
676300 TTCAAAAGGGTGCCACTAACTTGTGAGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
**
676328 TTCGAAAGGGTGCCACTAACTTGTGGGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
* * * *
676356 TTTGAAAGGGTGCCA-TAGGCTTATTATAGGC
1 TTTAAAAGGGTGCCACTA-AC---TTGTGGGC
* * * *
676387 TTTGAAAGGGAGCCTACTGACTTATGGGC
1 TTTAAAAGGGTGCC-ACTAACTTGTGGGC
* * *
676416 TTTGAGAGAGGTTACCAC-AGACTTGTGTGGGC
1 TTT-A-AAAGGGTGCCACTA-AC-T-TGTGGGC
* * * * * *
676448 TTTAAGA-GGTACCATTGACTTATGGGT
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
* * * *
676475 TTTGAGAGATGTTGCCACCAACTTGTGTGGGC
1 TTT-A-AAAGGGTGCCACTAAC-T-TGTGGGC
** * *
676507 TTTGAGAAA-AATGCCGA-TGACTTTTGGGC
1 TTT-A-AAAGGGTGCC-ACTAACTTGTGGGC
* ** * *
676536 TTTGAAATGAATGCCATTGACTTGTGGGC
1 TTT-AAAAGGGTGCCACTAACTTGTGGGC
** *
676565 TTTGAAAA-ATTGCCACTAACTTATGGGC
1 TTT-AAAAGGGTGCCACTAACTTGTGGGC
* * *
676593 TTTGAAAGGATGCCACTAACATGTGGGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
* * *
676621 TTTGAAAA-GATGCCACTGACTTGTAGGC
1 TTT-AAAAGGGTGCCACTAACTTGTGGGC
676649 TTTAAACA----G--AC--A--TGTGGGC
1 TTTAAA-AGGGTGCCACTAACTTGTGGGC
* * *
676668 TTTGAAAA-GATGCCACTGACTTTTGGGC
1 TTT-AAAAGGGTGCCACTAACTTGTGGGC
* * *
676696 TTTGAAAGGATGCCACTAACATGTGGGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
* * * *
676724 TTTGAAATGATGCCACTGACTTGTGGGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
* * *
676752 TTTGAAAAGGATGCTACTAACTTATGGGC
1 TTT-AAAAGGGTGCCACTAACTTGTGGGC
* * * *
676781 --TAAGAA---TGCCACTGACTTTTGAGT
1 TTTAA-AAGGGTGCCACTAACTTGTGGGC
* * *
676805 TTTGAAAGGGTGCCACTGACTTGTGAGC
1 TTTAAAAGGGTGCCACTAACTTGTGGGC
676833 TTTGAAAA
1 TTT-AAAA
676841 AGATCGTATT
Statistics
Matches: 492, Mismatches: 93, Indels: 92
0.73 0.14 0.14
Matches are distributed among these distances:
19 10 0.02
20 3 0.01
21 1 0.00
22 1 0.00
23 2 0.00
24 15 0.03
25 3 0.01
26 5 0.01
27 22 0.04
28 216 0.44
29 97 0.20
30 20 0.04
31 45 0.09
32 47 0.10
33 5 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (28 bp):
TTTAAAAGGGTGCCACTAACTTGTGGGC
Found at i:676439 original size:30 final size:30
Alignment explanation
Indices: 676405--676492 Score: 83
Period size: 29 Copynumber: 3.0 Consensus size: 30
676395 GGAGCCTACT
676405 GACTTATGGGCTTTGAGAGAGGTTACCACA
1 GACTTATGGGCTTTGAGAGAGGTTACCACA
* **
676435 GACTTGTGTGGGCTTT-A-AGAGG-TACCATT
1 GAC-T-TATGGGCTTTGAGAGAGGTTACCACA
* * *
676464 GACTTATGGGTTTTGAGAGATGTTGCCAC
1 GACTTATGGGCTTTGAGAGAGGTTACCAC
676493 CAACTTGTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
27 8 0.18
28 2 0.04
29 12 0.27
30 12 0.27
31 2 0.04
32 9 0.20
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.32
Consensus pattern (30 bp):
GACTTATGGGCTTTGAGAGAGGTTACCACA
Found at i:676447 original size:32 final size:32
Alignment explanation
Indices: 676411--676513 Score: 101
Period size: 32 Copynumber: 3.4 Consensus size: 32
676401 TACTGACTTA
676411 TGGGCTTTGAGAGAGGTTACCACAGACTTGTG
1 TGGGCTTTGAGAGAGGTTACCACAGACTTGTG
** *
676443 TGGGCTTT-A-AGAGG-TACCATTGAC-T-TA
1 TGGGCTTTGAGAGAGGTTACCACAGACTTGTG
* * *
676470 TGGGTTTTGAGAGATGTTGCCACCA-ACTTGTG
1 TGGGCTTTGAGAGAGGTTACCA-CAGACTTGTG
676502 TGGGCTTTGAGA
1 TGGGCTTTGAGA
676514 AAAATGCCGA
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
27 8 0.15
28 2 0.04
29 12 0.22
30 11 0.20
31 2 0.04
32 20 0.36
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.32
Consensus pattern (32 bp):
TGGGCTTTGAGAGAGGTTACCACAGACTTGTG
Found at i:676606 original size:56 final size:55
Alignment explanation
Indices: 676500--676841 Score: 323
Period size: 56 Copynumber: 6.3 Consensus size: 55
676490 CACCAACTTG
* * * *
676500 TGTGGGCTTTGAGAAAAATGCCGA-TGACTTTTGGGCTTTGAAATGAATGCCATTGACT
1 TGTGGGCTTT--GAAAAATGCC-ACTGACTTTTGGGCTTTGAAA-GGATGCCACTAACA
* *
676558 TGTGGGCTTTGAAAAATTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTAACA
1 TGTGGGCTTTGAAAAA-TGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACA
* * *
676614 TGTGGGCTTTGAAAAGATGCCACTGACTTGTAGGCTTT--AA--A---CA--GACA
1 TGTGGGCTTTGAAAA-ATGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACA
676661 TGTGGGCTTTGAAAAGATGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACA
1 TGTGGGCTTTGAAAA-ATGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACA
* * * *
676717 TGTGGGCTTTGAAATGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAA-AATGCCACTGACTTTTGGGCTTTG-AAAGGATGCCACTAACA
* * * * * * *
676774 TATGGGC--T-AAGAATGCCACTGACTTTTGAGTTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAATGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACA
*
676826 TGTGAGCTTTGAAAAA
1 TGTGGGCTTTGAAAAA
676842 GATCGTATTG
Statistics
Matches: 238, Mismatches: 29, Indels: 37
0.78 0.10 0.12
Matches are distributed among these distances:
47 39 0.16
49 4 0.02
51 1 0.00
52 20 0.08
53 20 0.08
54 7 0.03
55 5 0.02
56 89 0.37
57 43 0.18
58 10 0.04
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (55 bp):
TGTGGGCTTTGAAAAATGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACA
Found at i:676711 original size:75 final size:75
Alignment explanation
Indices: 676588--676726 Score: 206
Period size: 75 Copynumber: 1.9 Consensus size: 75
676578 CACTAACTTA
* * *
676588 TGGGCTTTGAAAGGATGCCACTAACATGTGGGCTTTGAAAAGATGCCACTGACTTGTAGGCTTTA
1 TGGGCTTTGAAAAGATGCCACTAACATGTGGGCTTTGAAAAGATGCCACTAACATGTAGGCTTTA
676653 AACAGACATG
66 AACAGACATG
* * * * *
676663 TGGGCTTTGAAAAGATGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACATGTGGGCTTT
1 TGGGCTTTGAAAAGATGCCACTAACATGTGGGCTTTGAAAAGATGCCACTAACATGTAGGCTTT
676727 GAAATGATGC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 56 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (75 bp):
TGGGCTTTGAAAAGATGCCACTAACATGTGGGCTTTGAAAAGATGCCACTAACATGTAGGCTTTA
AACAGACATG
Found at i:676737 original size:103 final size:103
Alignment explanation
Indices: 676558--676754 Score: 342
Period size: 103 Copynumber: 1.9 Consensus size: 103
676548 GCCATTGACT
676558 TGTGGGCTTTGAAAAATTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTAACATGTGGGCTT
1 TGTGGGCTTTGAAAAATTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTAACATGTGGGCTT
676623 TGAAAAGATGCCACTGACTTGTAGGCTTTAAACAGACA
66 TGAAAAGATGCCACTGACTTGTAGGCTTTAAACAGACA
* *
676661 TGTGGGCTTTGAAAAGA-TGCCACTGACTTTTGGGCTTTGAAAGGATGCCACTAACATGTGGGCT
1 TGTGGGCTTTGAAAA-ATTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTAACATGTGGGCT
* *
676725 TTGAAATGATGCCACTGACTTGTGGGCTTT
65 TTGAAAAGATGCCACTGACTTGTAGGCTTT
676755 GAAAAGGATG
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
103 88 0.99
104 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (103 bp):
TGTGGGCTTTGAAAAATTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTAACATGTGGGCTT
TGAAAAGATGCCACTGACTTGTAGGCTTTAAACAGACA
Done.