Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold331
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1394875
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 4 of 8
Found at i:676868 original size:14 final size:14
Alignment explanation
Indices: 676849--676936 Score: 67
Period size: 13 Copynumber: 6.6 Consensus size: 14
676839 AAAGATCGTA
676849 TTGACAAAAATTTC
1 TTGACAAAAATTTC
*
676863 TTGAC-AAAGTTT-
1 TTGACAAAAATTTC
*
676875 TTGACAAACA-TTC
1 TTGACAAAAATTTC
*
676888 TTGACAAAAGTTT-
1 TTGACAAAAATTTC
* * *
676901 TGGACGATAATTTC
1 TTGACAAAAATTTC
* **
676915 TTAACAACCATTTC
1 TTGACAAAAATTTC
676929 TTGACAAA
1 TTGACAAA
676937 TGCCGAATTG
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
12 7 0.13
13 25 0.46
14 22 0.41
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (14 bp):
TTGACAAAAATTTC
Found at i:676892 original size:25 final size:27
Alignment explanation
Indices: 676849--676921 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 27
676839 AAAGATCGTA
676849 TTGACAAAAATTTCTTGAC-AAAGTTT
1 TTGACAAAAATTTCTTGACAAAAGTTT
*
676875 TTGACAAACA-TTCTTGACAAAAGTTT
1 TTGACAAAAATTTCTTGACAAAAGTTT
* * * *
676901 TGGACGATAATTTCTTAACAA
1 TTGACAAAAATTTCTTGACAA
676922 CCATTTCTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
25 8 0.21
26 22 0.56
27 9 0.23
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (27 bp):
TTGACAAAAATTTCTTGACAAAAGTTT
Found at i:678099 original size:30 final size:31
Alignment explanation
Indices: 677998--678114 Score: 155
Period size: 32 Copynumber: 3.7 Consensus size: 31
677988 CATTGGGTTT
* *
677998 AGAAGGGTTGCCACCAACTTTTGTGCACTTTAA
1 AGAA-GGTTGCCACCAACTTGTGTGCGCTTT-A
678031 AGAAGGTTGCCACCAACTTGTGTGCGCTTTA
1 AGAAGGTTGCCACCAACTTGTGTGCGCTTTA
*
678062 GAGAAGGTTGCCACCAACTTGTGTGGGCTTT-
1 -AGAAGGTTGCCACCAACTTGTGTGCGCTTTA
**
678093 AGAAGGTTGCCACTGACTTGTG
1 AGAAGGTTGCCACCAACTTGTG
678115 GGCTTCAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
30 20 0.26
31 1 0.01
32 53 0.68
33 4 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (31 bp):
AGAAGGTTGCCACCAACTTGTGTGCGCTTTA
Found at i:678126 original size:28 final size:28
Alignment explanation
Indices: 678083--678904 Score: 370
Period size: 28 Copynumber: 28.6 Consensus size: 28
678073 CACCAACTTG
* *
678083 TGTGGGCTTTAGAAGGTTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
678111 TGTGGGCTTCAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* **
678139 TGTGGGCTTCGAAAAGG-TGTTACTGACT
1 TGTGGGCTT-TAAAAGGATGCCACTGACT
* * *
678167 TGTGAGCTTCGAAAAGG-TGCCACTAACT
1 TGTGGGCTT-TAAAAGGATGCCACTGACT
* * **** * * *
678195 TAGATAGG-TGTTGATTCAAGGCCAGCAG-CA
1 T-G-TGGGCT-TTAAAAGGATGCCA-CTGACT
* * **
678225 T-TGGG-TTTAGAAGGGTTGCCACCAACTT
1 TGTGGGCTTTA-AAAGGATGCCACTGAC-T
* * * *
678253 ATGAGGGCTTTTGAGAAGGCTGCCACTAACTT
1 -TGTGGGC-TTT-AAAAGGATGCCACTGAC-T
* * * *
678285 GTGTGGGCTTCAGAATGGTTGCCACTAACT
1 -TGTGGGCTTTA-AAAGGATGCCACTGACT
* * *
678315 TATGGGCTTTAAAAGGATGCCACTTATT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
678343 TGTGGGCTTCAAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
** * ** * *
678371 TGTGTTCTTCAAAAGGGCGCCAATAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * * *
678399 TGTGGGCTTTGAAAGGGTGTCATTGGCT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * * *
678427 TGTAGGCTTTGAAAGGGTACGCACTAACT
1 TGTGGGCTTTAAAAGGATGC-CACTGACT
* * * *
678456 TGTGGGCATTGAGAGAGGTTGCCACCGACTT
1 TGTGGGC-TTTA-AAAGGATGCCACTGAC-T
* *
678487 GTGTGGGCTTT-AAAGGGTGCCACTAACT
1 -TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
678515 TGTAGGCTTTGAGAGAGGTTGCCA-TCGACT
1 TGTGGGCTTT-A-AAAGGATGCCACT-GACT
* * *
678545 CGTGTGGGCTTTGAAAGGATACAACTGACT
1 --TGTGGGCTTTAAAAGGATGCCACTGACT
** *
678575 TGTGGGCTTTGCGAAGGATGCCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
678604 TGTGGTCTTTGAAAAGGATGCAACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
678633 TATGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
** * *
678662 TAAGGGCTTTGAGAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
678691 TGTGGGTTTTGAAAAGG-TGCCACTGACA
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
678719 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * *
678747 TATGGGCTTTGAAAGGATGCCACTAACA
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
678775 TGTGGGCTTTGAAATGATGCCACTCACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
** *
678803 TCG-GGGCTTTGTGAAGGATGCCATTGACT
1 T-GTGGGCTTT-AAAAGGATGCCACTGACT
* * *
678832 TGTGGGCTTTGAAAA-GTTGCCACTAATT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * * * **
678860 TCTGGGCTTTGAAAGGGTGCTAGAGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
678888 TGTGGGCTTTGAAAAGG
1 TGTGGGCTTT-AAAAGG
678905 GTTGTATTGA
Statistics
Matches: 607, Mismatches: 153, Indels: 67
0.73 0.19 0.08
Matches are distributed among these distances:
26 3 0.00
27 27 0.04
28 292 0.48
29 175 0.29
30 44 0.07
31 26 0.04
32 39 0.06
33 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:678494 original size:32 final size:32
Alignment explanation
Indices: 678456--678558 Score: 108
Period size: 32 Copynumber: 3.4 Consensus size: 32
678446 CGCACTAACT
*
678456 TGTGGGCATTGAGAGAGGTTGCCACCGACTTG
1 TGTGGGCTTTGAGAGAGGTTGCCACCGACTTG
* **
678488 TGTGGGCTTT-A-A-AGGGTGCCACTAAC-T-
1 TGTGGGCTTTGAGAGAGGTTGCCACCGACTTG
* * *
678515 TGTAGGCTTTGAGAGAGGTTGCCATCGACTCG
1 TGTGGGCTTTGAGAGAGGTTGCCACCGACTTG
678547 TGTGGGCTTTGA
1 TGTGGGCTTTGA
678559 AAGGATACAA
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
27 9 0.16
28 2 0.04
29 12 0.22
30 11 0.20
31 1 0.02
32 20 0.36
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.29
Consensus pattern (32 bp):
TGTGGGCTTTGAGAGAGGTTGCCACCGACTTG
Found at i:678513 original size:59 final size:57
Alignment explanation
Indices: 678257--678901 Score: 516
Period size: 56 Copynumber: 11.2 Consensus size: 57
678247 CAACTTATGA
* * * * *
678257 GGGCTTTTGAGAAGGCTGCCACTAACTTGTGTGGGC-TTCAGAATGGTTGCCACTAACTTAT
1 GGGC-TTTGA-AAGGATGCCACTAAC-T-TGTGGGCTTTGAGAA-GGATGCCACTGACTTGT
* * * * * * *
678318 GGGCTTTAAAAGGATGCCACTTATTTGTGGGC-TTCAAAAGGGTGCCACTAACTTGT
1 GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
** ** ** * * * * *
678374 GTTCTTCAAAAGGGCGCCAATAACTTGTGGGCTTTGA-AAGGGTGTCATTGGCTTGT
1 GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
* * * * * *
678430 AGGCTTTGAAAGGGTACGCACTAACTTGTGGGCATTGAGAGAGGTTGCCACCGACTTGTGT
1 GGGCTTTGAAAGGATGC-CACTAACTTGTGGGCTTTGAGA-AGGATGCCACTGAC-T-TGT
* * *
678491 GGGCTTT-AAAGGGTGCCACTAACTTGTAGGCTTTGAGAGAGGTTGCCA-TCGACTCGTGT
1 GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGA-AGGATGCCACT-GACT--TGT
* * * * *
678550 GGGCTTTGAAAGGATACAACTGACTTGTGGGCTTTGCGAAGGATGCCATTGACTTGT
1 GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
* * * * **
678607 GGTCTTTGAAAAGGATGCAACTGACTTATGGGCTTTGAGAAGGATGCCACTGACTTAA
1 GGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
* * *
678665 GGGCTTTGAGAAGGATGCCACTAACTTGTGGGTTTTGAAAAGG-TGCCACTGACATGT
1 GGGCTTTGA-AAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
* * * * *
678722 GGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGA-AAGGATGCCACTAACATGT
1 GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
* * * *
678778 GGGCTTTGAAATGATGCCACTCACTTCG-GGGCTTTGTGAAGGATGCCATTGACTTGT
1 GGGCTTTGAAAGGATGCCACTAACTT-GTGGGCTTTGAGAAGGATGCCACTGACTTGT
* * * * * * **
678835 GGGCTTTGAAAAGTTGCCACTAATTTCTGGGCTTTGA-AAGGGTGCTAGAGACTTGT
1 GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
678891 GGGCTTTGAAA
1 GGGCTTTGAAA
678902 AGGGTTGTAT
Statistics
Matches: 483, Mismatches: 85, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
55 4 0.01
56 158 0.33
57 111 0.23
58 81 0.17
59 77 0.16
60 39 0.08
61 13 0.03
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (57 bp):
GGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGT
Found at i:678915 original size:85 final size:84
Alignment explanation
Indices: 678257--678906 Score: 444
Period size: 85 Copynumber: 7.5 Consensus size: 84
678247 CAACTTATGA
* * * * * * *
678257 GGGCTTTTGAGAAGGCTGCCACTAACTTGTGTGGGCTTCAGAATGGTTGCCACTAACTTATGGGC
1 GGGC-TTTGAAAAGG-TGCCACTGAC-T-TGTGGGCTT-TGAAAGGGTGCCATTGACTTATGGGC
* * *
678322 TTTAAAAGGATGCCACTTATTTGT
61 TTTGAAAGGATGCCACTAACTTGT
* * ** ** * * * *
678346 GGGC-TTCAAAAGGGTGCCACTAACTTGTGTTCTTCAAAAGGGCGCCAATAACTTGTGGGCTTTG
1 GGGCTTTGAAAA-GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTATGGGCTTTG
* * * **
678410 AAAGGGTGTCATTGGCTTGT
65 AAAGGATGCCACTAACTTGT
* * * * * * ** *
678430 AGGCTTTGAAAGGGTACGCACTAACTTGTGGGCATTGAGAGAGGTTGCCACCGACTTGTGTGGGC
1 GGGCTTTGAAAAGGTGC-CACTGACTTGTGGGCTTTGA-A-AGGGTGCCATTGAC-T-TATGGGC
*
678495 TTT-AAAGGGTGCCACTAACTTGT
61 TTTGAAAGGATGCCACTAACTTGT
* * * * * * *
678518 AGGCTTTGAGAGAGGTTGCCA-TCGACTCGTGTGGGCTTTGAAAGGATACAACTGACTTGTGGGC
1 GGGCTTTGA-AAAGG-TGCCACT-GACT--TGTGGGCTTTGAAAGGGTGCCATTGACTTATGGGC
* * *
678582 TTTGCGAAGGATGCCATTGACTTGT
61 TTTG-AAAGGATGCCACTAACTTGT
* * * * * *
678607 GGTCTTTGAAAAGGATGCAACTGACTTATGGGCTTTGAGAAGGATGCCACTGACTTAAGGGCTTT
1 GGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTGA-AAGGGTGCCATTGACTTATGGGCTTT
678672 GAGAAGGATGCCACTAACTTGT
64 GA-AAGGATGCCACTAACTTGT
* * *
678694 GGGTTTTGAAAAGGTGCCACTGACATGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGA
1 GGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTATGGGCTTTGA
*
678759 AAGGATGCCACTAACATGT
66 AAGGATGCCACTAACTTGT
* * * * * *
678778 GGGCTTTGAAATGATGCCACTCACTTCG-GGGCTTTGTGAAGGATGCCATTGACTTGTGGGCTTT
1 GGGCTTTGAAAAGGTGCCACTGACTT-GTGGGCTTTG-AAAGGGTGCCATTGACTTATGGGCTTT
* * * *
678842 GAAAAGTTGCCACTAATTTCT
64 GAAAGGATGCCACTAACTTGT
* * **
678863 GGGCTTTGAAAGGGTGCTAGAGACTTGTGGGCTTTGAAAAGGGT
1 GGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG-AAAGGGT
678907 TGTATTGACG
Statistics
Matches: 448, Mismatches: 93, Indels: 44
0.77 0.16 0.08
Matches are distributed among these distances:
84 91 0.20
85 126 0.28
86 33 0.07
87 86 0.19
88 42 0.09
89 56 0.12
90 3 0.01
91 11 0.02
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (84 bp):
GGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTATGGGCTTTGA
AAGGATGCCACTAACTTGT
Found at i:678940 original size:26 final size:26
Alignment explanation
Indices: 678911--678983 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
678901 AAGGGTTGTA
678911 TTGACGAAAATTTCTTGACAAAGTTT
1 TTGACGAAAATTTCTTGACAAAGTTT
*
678937 TTGAC-AAACA-TTCTCGACAAAAGTTT
1 TTGACGAAA-ATTTCTTGAC-AAAGTTT
* *
678963 TTGAGGATAATTTCTTGACAA
1 TTGACGAAAATTTCTTGACAA
678984 TAATTTCTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 10 0.26
26 20 0.51
27 9 0.23
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (26 bp):
TTGACGAAAATTTCTTGACAAAGTTT
Found at i:678986 original size:14 final size:13
Alignment explanation
Indices: 678911--678998 Score: 74
Period size: 14 Copynumber: 6.6 Consensus size: 13
678901 AAGGGTTGTA
678911 TTGACGAAAATTTC
1 TTGAC-AAAATTTC
*
678925 TTGACAAAGTTT-
1 TTGACAAAATTTC
678937 TTGACAAACA-TTC
1 TTGACAAA-ATTTC
*
678950 TCGACAAAAGTTT-
1 TTGACAAAA-TTTC
* *
678963 TTGAGGATAATTTC
1 TTGA-CAAAATTTC
678977 TTGACAATAATTTC
1 TTGACAA-AATTTC
678991 TTGACAAA
1 TTGACAAA
678999 TGGAGAATTG
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
12 11 0.19
13 21 0.36
14 27 0.46
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (13 bp):
TTGACAAAATTTC
Found at i:682136 original size:475 final size:473
Alignment explanation
Indices: 680338--683122 Score: 3112
Period size: 475 Copynumber: 5.9 Consensus size: 473
680328 TGTTTGGTGA
** ** * * * *
680338 GAAGAAAGCCTTTCTCACGAAACCAAAGTGTTAAT-TCATGTATCCTTATGAGTAGATTATGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
* * * * * *
680402 ATGTTGCCTAATCCT-AGAAAGAATGCGGACTAGTTTGAGTACTT-ATGTTTGTATTATTTAAGA
66 ATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGA
* * * * * *
680465 GACAAACTTTAATTTCTATCAAAAATGGTGGAAATAAAAGCTTTTATTGCAACACCAAAGCATCA
129 GACAAACTTTGA-TTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
680530 TTGTCATGTATCCTAATAAAGAAAATGTTTTCTTGGTTCCTAATCTTGAAAAGAATGGGGACTGT
193 ATGTCATGTATCCTAAT-AAGAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGT
** * * * * *
680595 TGTGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTATGGAAAATGGGGCAAATA
257 TACGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-G
* * *
680660 AAAGATTTCCATGCAAAAGAAAATCAT-AAGTATCACTTATCCTAATAAGGAGAATGCGTTTATA
321 AAAGATTTCCATGCAAAAGAAAATCATCAA-TATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
680724 GTGCCTAATCATAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT-CTCAATTGACGTAAA
385 GTGCCTAATCACAAA-AGAATGAAGATCATTACTAGAATCCATGTTTGTCCT-AATTGAGGCACA
* *
680788 AACATAGACTTTACAAAAATTAGTGA
448 AACTTAGACTTTACAAAAATTAGTGG
* * *** * * *
680814 GAAGAAAGCCTTTCTTGTGAAACCAAAGTATCAATATTGGGTATCCTTATGAGAAGACAATGTTC
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
* * * * * *
680879 ATGGTGCCTAATGCTGAAAAGAGTGGGGATTAGCATGGCTATTCTTGTTTGTCTTATTTAAAAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * *
680944 CAAACTTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTTAATG
131 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * **
681009 TAAGGTATCTTAATGAAGAGAATGTGTTCTTTGTTCCTAATCTTGAAAAGAGCGGAGACTGTTAC
196 TCATGTATCCTAAT-AAGAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTAC
* * * *** *
681074 GGGAATCGATGCTTGTCATATCTAAGAGATGTTTTTTTTG-TTTTAAGGAAAAAAGGGCAAAGAA
260 GAGAATCGATGCTTGTCATATTTAAGGGATG--AACTTTGATTTTAAGGAAAATAGGGCAAAG-A
** * *
681138 AAGATTTTTATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGT
322 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * * *
681203 GCCTAAACACAAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCCCAATTAAGGCACGAAC
387 GCCTAATCACAAAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACAAAC
* * * *
681268 TTCGGCTTTACAAAATTTGGTGG
451 TTAGACTTTACAAAAATTAGTGG
* * * * *** * * * *
681291 GAAGAAAGCTTTTCTTACGAAACCAATGCTTCTGCATCATGTATCTTTTTTAGAAGACTAAGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
* * * * * * *
681356 GTGGTGCCTAATCCTAAAAATAATAGGGATTAGTATGATTCTTCA--TATGTCTTATTTAAGAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * * *
681419 CAAACTTTGATTCTCTAAAAAACAATTGAAAGAAAAGCTTTTCTTGCGACATCAAAGCCTCAATG
131 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
681484 TCTTGTATCCTAGTATAGGGAAAGTGTTCTGGGTTCCTAATCTTGAAAAGAATGGAGACTATTAT
196 TCATGTATCCTAATA-AGAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTAC
* * * * *
681549 GAGAAGCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAG
260 GAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAG
*
681614 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTCCC
325 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* ** *
681679 TAATCACAAAACAATTGAAGATCATTACTAGAATTTATGTTTGTCCTATTTGAGGCACAAACTTA
390 TAATCACAAAAGAA-TGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACAAACTTA
681744 GACTTTACAAAAATTAGTGG
454 GACTTTACAAAAATTAGTGG
* * * *
681764 GAAGAAAGCCTTTCTTGCAAAACCAAAACCTCAATATCATATATCCTTATAAGAAGACTATGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
* * * * *
681829 ATGGTGCCTAATCCTGAAAATAATAGGGATTAGAATAACTATTCATGTTTGTCTTATTTAAAAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * *
681894 CAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCCTTTCTTGTGACAGCAAAGCATCAATG
131 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * *
681959 TCATGTTTCCTAATAACGAGAATGTGTGCTTGGTTCCCAAACTTGAAGAGAATGGAGACTGTTAC
196 TCATGTATCCTAATAA-GAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTAC
* * * *
682024 AAGAATCGATGCTTGTGATATTTAGGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAATG
260 GAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAG
*
682089 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCC
325 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
682154 TAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGT-CTCATTTGAGGCACAAACTA
390 TAATCACAAAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCCT-AATTGAGGCACAAACTT
**
682218 AGACTTTACAAAAATT-GACAG
453 AGACTTTACAAAAATTAG-TGG
* * * * * *
682239 GAAGAAAGCCTTTCTTGAGAAACTAAAACATCAATATCATATATCCTTATAAGAAGACAATGATT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
* * *
682304 ATGATGCCTAATCCTGAAAAGAGTGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * *
682369 CAAACATTGATTCTATCAAAAACGATGGAAAGAAAAGCCTTTCTT-CTAACACCAAAGCATCAAT
131 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAAT
* * * * *
682433 GTCATGTTTCCTAATAAAGAGAATG-GCTTCTTGGTTCCCAATCTTGAAGAGAATAGAGACGGTT
195 GTCATGTATCCTAAT-AAGAGAATGTG-TTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTT
* * * * * * *
682497 ACGAGAATCGACGCTTGTCACATTTAAGGGATGAATTTTTATTTTATGGAAAATGGGGTAAAGAA
258 ACGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * * * ** * *
682562 CAAATTTCCATG-AAAAAAAAAACATCGATATCATATATCTTAAAAAGGAGAATGTGTTTACAAT
323 -AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * *
682626 GCCTAACCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTATCAC-AATTGAGGCACAAA
387 GCCTAATCACAAA-AGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTAATTGAGGCACAAA
* * *
682690 GTTAGACTTTACAAAAAATGGTGG
450 CTTAGACTTTACAAAAATTAGTGG
* * * *
682714 GAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
* * * * *
682779 ATAGTGCCTAA-CCTTGAAAAGAACGGGGATTAGTATGACTATTCTTGTTTGCCTTATTTGAGAG
66 ATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* ** *
682843 A-AAACTTTGATTCTATCAAAAACGGAT-GAAAGAAATGCTTTTCTTGCGACACCAAAGTGTCAT
130 ACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * *
682906 TGTCATGTATCCTACTGAATATAATGTGTT-TGTGGTTCCTAATCATGAAAAGAATGGAGACTAT
194 TGTCATGTATCCTAAT-AAGAGAATGTGTTCT-TGGTTCCTAATCTTGAAAAGAATGGAGACTGT
* * * * * * *
682970 GATGAGAATCCATTCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAACT-GGGCAAAA
257 TACGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAG
* * *
683034 AAAGGATTTTCAT--AAAA-AAAATTATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATA
321 AAA-GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
683096 GTGCCTAATCTCAAAGTGAATGAAGAT
385 GTGCCTAATCACAAA-AGAATGAAGAT
683123 TGTTAGGATC
Statistics
Matches: 1941, Mismatches: 335, Indels: 70
0.83 0.14 0.03
Matches are distributed among these distances:
472 64 0.03
473 234 0.12
474 184 0.09
475 975 0.50
476 173 0.09
477 303 0.16
478 8 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCCTAATAAGAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACG
AGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
AATCACAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCCTAATTGAGGCACAAACTTAGA
CTTTACAAAAATTAGTGG
Found at i:683485 original size:20 final size:20
Alignment explanation
Indices: 683460--683497 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
683450 ATACATGCTT
683460 ATTGTATCGATACATGAAGA
1 ATTGTATCGATACATGAAGA
*
683480 ATTGTATCGATACGTGAA
1 ATTGTATCGATACATGAA
683498 ACTGGCAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ATTGTATCGATACATGAAGA
Found at i:688664 original size:19 final size:20
Alignment explanation
Indices: 688618--688655 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
688608 ACTCAAATTT
688618 CTTTCATTTTACATCAAATC
1 CTTTCATTTTACATCAAATC
*
688638 CTTTCATTTTACTTCAAA
1 CTTTCATTTTACATCAAA
688656 ATCTTCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (20 bp):
CTTTCATTTTACATCAAATC
Found at i:689870 original size:15 final size:16
Alignment explanation
Indices: 689850--689886 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
689840 GCTTTAAATA
689850 TTTTATTAA-GGGGAG
1 TTTTATTAAGGGGGAG
689865 TTTTATTAAGGGGGAG
1 TTTTATTAAGGGGGAG
689881 TTTTAT
1 TTTTAT
689887 ATATTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (16 bp):
TTTTATTAAGGGGGAG
Found at i:690447 original size:20 final size:20
Alignment explanation
Indices: 690422--690459 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
690412 ATACATACTT
690422 ATTGTATCAATACATGAAGA
1 ATTGTATCAATACATGAAGA
* *
690442 ATTGTATCGATACTTGAA
1 ATTGTATCAATACATGAA
690460 ACTGGCAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (20 bp):
ATTGTATCAATACATGAAGA
Found at i:692516 original size:20 final size:20
Alignment explanation
Indices: 692468--692524 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
692458 GTATTGATAC
***
692468 ATTGTATCGATACATG-CTC
1 ATTGTATCGATACATGAAGA
*
692487 ATTATATCGATACATGAAGA
1 ATTGTATCGATACATGAAGA
692507 ATTGTATCGATACATGAA
1 ATTGTATCGATACATGAA
692525 ACTGGCAGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (20 bp):
ATTGTATCGATACATGAAGA
Found at i:696935 original size:33 final size:33
Alignment explanation
Indices: 696893--696956 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
696883 ACAAGCTATT
*
696893 TATCGATACAATACATCATGTATCGATACAATG
1 TATCAATACAATACATCATGTATCGATACAATG
* * *
696926 TATCAATACATTGCATCATGTATTGATACAA
1 TATCAATACAATACATCATGTATCGATACAA
696957 ACAGTGGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (33 bp):
TATCAATACAATACATCATGTATCGATACAATG
Found at i:697044 original size:13 final size:13
Alignment explanation
Indices: 697026--697050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
697016 ACAACTAACA
697026 TGTATCGATACAT
1 TGTATCGATACAT
697039 TGTATCGATACA
1 TGTATCGATACA
697051 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:697653 original size:21 final size:22
Alignment explanation
Indices: 697598--697667 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 22
697588 AGTTTTCATT
697598 TTTCTCCCCCTTAATTAAAGAA
1 TTTCTCCCCCTTAATTAAAGAA
*** *
697620 TTT-TTTTCTTTAATTAAA-AA
1 TTTCTCCCCCTTAATTAAAGAA
* *
697640 TTTCTCCCCCTTAATCAAAGCA
1 TTTCTCCCCCTTAATTAAAGAA
697662 TTTCTC
1 TTTCTC
697668 AAAAAATTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
20 5 0.14
21 21 0.58
22 10 0.28
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (22 bp):
TTTCTCCCCCTTAATTAAAGAA
Found at i:705804 original size:51 final size:51
Alignment explanation
Indices: 705736--705850 Score: 230
Period size: 51 Copynumber: 2.3 Consensus size: 51
705726 ACAATTCATA
705736 ATGTATCGATACATTGATTTGAAATTATAGCTGTTTATAGCGTTACAAGCT
1 ATGTATCGATACATTGATTTGAAATTATAGCTGTTTATAGCGTTACAAGCT
705787 ATGTATCGATACATTGATTTGAAATTATAGCTGTTTATAGCGTTACAAGCT
1 ATGTATCGATACATTGATTTGAAATTATAGCTGTTTATAGCGTTACAAGCT
705838 ATGTATCGATACA
1 ATGTATCGATACA
705851 ATTCATCATG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (51 bp):
ATGTATCGATACATTGATTTGAAATTATAGCTGTTTATAGCGTTACAAGCT
Found at i:705880 original size:33 final size:33
Alignment explanation
Indices: 705838--705901 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
705828 GTTACAAGCT
705838 ATGTATCGATACAATT-CATCATGTATCGATATA
1 ATGTATCGATAC-ATTGCATCATGTATCGATATA
*
705871 ATGTATCGATACATTGTATCATGTATCGATA
1 ATGTATCGATACATTGCATCATGTATCGATA
705902 CAAATAGTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (33 bp):
ATGTATCGATACATTGCATCATGTATCGATATA
Found at i:705992 original size:13 final size:13
Alignment explanation
Indices: 705974--705998 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
705964 ACAACTAACA
705974 TGTATCGATACAT
1 TGTATCGATACAT
705987 TGTATCGATACA
1 TGTATCGATACA
705999 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:711542 original size:20 final size:19
Alignment explanation
Indices: 711519--711585 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
711509 CTAGAAGTGC
* *
711519 CGATACATATTGCTTTGTAT
1 CGATACATACT-CATTGTAT
*
711539 CGATACATGCTCATTGTAT
1 CGATACATACTCATTGTAT
***
711558 CGATACATGAAAAATTGTAT
1 CGATACAT-ACTCATTGTAT
711578 CGATACAT
1 CGATACAT
711586 TAAACTGGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 15 0.38
20 24 0.62
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (19 bp):
CGATACATACTCATTGTAT
Found at i:711557 original size:19 final size:20
Alignment explanation
Indices: 711533--711585 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
711523 ACATATTGCT
***
711533 TTGTATCGATACATG-CTCA
1 TTGTATCGATACATGAAAAA
711552 TTGTATCGATACATGAAAAA
1 TTGTATCGATACATGAAAAA
711572 TTGTATCGATACAT
1 TTGTATCGATACAT
711586 TAAACTGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (20 bp):
TTGTATCGATACATGAAAAA
Found at i:715516 original size:476 final size:475
Alignment explanation
Indices: 712391--723879 Score: 11972
Period size: 476 Copynumber: 24.2 Consensus size: 475
712381 TAAGCTTACA
* * *
712391 AAGATCATTACAAGAATCCATGTTTGTTACAATTGAGGCACGAACTTAGACTTTACAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
** ** * *
712456 TGGGGGGAAAGCCTTTCTTATGAAACCAAAGCATCAATATTGTCTATCCTTATGAGAAGACTATG
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
* ** * * *
712521 TTTATGGTGCCTAATCCTGAAAAGAATGGCAATTAGAATGACTATTCATGTTTGTCATATGTAAG
131 TTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
712586 AGACAAACTTTGATTCTATCAAGAACGATTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
196 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
* * * * *
712651 ATGCCATGTATCCTAATGAAAGCAATGTGATTTTGGTTCCCAATATTGAAAAGAATGAAGACTGT
261 ATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * *
712716 TACGAGAATCAAAGTTTGCCTTATTTAAGGGATGAACTTTGATTATAAGGAAAATAGGGCAAAGA
325 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * * * * *
712781 AAAAATTTTCATGCAAAAAAAAAAAAACATCAATTAT-ATTTATCCTAATAAGGAGACTATGTTT
390 AAAGATTTCCATGC---AAAAGAAAATCATCAA-TATCATTTATCCTAATGAGGAGAATGTGTTT
* *
712845 ATAGTGCCTAATCACAAAATGAATA
451 ATAGTGCCTAATCACAAAGTGAATG
* * * *
712870 AAGATCATTACTAGAATCCATGTTCGTCTCATTTGAGGCA-GAAACTTAGACTTTTCAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * * ** * ** *
712934 GTGGAAAAAAAGCCTTTCATGTGAAACCAAAGTGTCAATATCGTGTATCCTTATGACTAGACAAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * *
712999 GTTTATGGTG-CTAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATATA
130 GTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * * *
713063 AGAGACAAA---TGATTCTATAAAAAATGATGGAAAGAAATGTTTTTCTTACGACATCAAAG-AT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * * * *
713124 CAATGTCATGTCTCCTAATAAAGAGAATGTGTTCTTGGCTCCAAATCTTGCAAAGAATAGAGACT
259 CAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
** * * * * *
713189 GTTACGAGAATCGTTACTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAA
323 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AA
* * * * *
713254 AAAAAAGATTTTCATGCAAAA-AAAATCAAT-AATATCATTTGTCTTTATGAGGAGAATGTGTTT
387 AGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* *
713317 ATAATGCCTAATCACAATGTGAATG
451 ATAGTGCCTAATCACAAAGTGAATG
* * * * *
713342 AAGATCATTTCTAGAATCAAT-TTTGTCACAATTGAGGCACGAACTTAGGCTTTACAAAAATAGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
*
713406 TGGGAAGAAAGCAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATAAGAAGACT
66 TGGGAAG-AA--AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACT
* * * * *
713471 ATGTTTAAGGTGCCTAATCCTAAAAAGAATGGGGATGAGTATAACTATTCATGTTTGTCTTATTT
128 ATGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * * * *
713536 AAAAGATAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCA
193 AAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCA
* * * * * * *
713601 TCAATGTCATTTATCATAATAAAGAGAATTTGTTCTTGGCTCCCAATCTTGAAAAGAATGAAGAT
258 TCAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* ** * * * * * *
713666 TGTTAAGAGAATTGATGCTTG-TTATATTTAAGGTATGAATTTTTATTTTAATGAAAATGGGGGC
322 TGTTACGAGAATCAATGCTTGCCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGC
* * * * *
713730 AAATAAAAGATTTCCATGCAAAAGAAGAA-CAACAATATCATTTGTCCTTAA-GAAGAGAATATG
385 AAAGAAAAGATTTCCATGCAAAAGAA-AATCATCAATATCATTTATCC-TAATGAGGAGAATGTG
* *
713793 TTAATAGTGCCTAATCACAAAGTGAATA
448 TTTATAGTGCCTAATCACAAAGTGAATG
* * *
713821 AAGATCATTTCTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGGCTTTACAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * * * * * *
713886 TAGGAAGAAAGCCTTTATGGTGAAATCAAAGCATCAATATCGTATATCCTTATAAGAGGACTATG
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
* * * * *
713951 TTTAGGGTGCCTAATCCTGAAAAGAATGGGGATGAGTATAACTATTTATGTTTGTCTTATTTAAG
131 TTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * *
714016 AGACAAACTTTGATTTTATTAAAAAAGATTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCA
196 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
* * * * *
714081 ATGTCATTTATCCTAATAAAGAGAATTTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGATTGT
261 ATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
** * * * * * * * * **
714146 TGTGAGTATCGATGCTTGTCATATTTAAGGTATAAATTTTTATTTTAATAAAAATAAGGGCAAAG
325 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAG
* * * *
714211 AAAAGATTTTCATGCAAAAGATAATCATCAATATCATTTATCCTAATAAGGAGAATGTGATTATA
389 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
714276 GTGCCAAATCACAAAATGAATG
454 GTGCCTAATCACAAAGTGAATG
* * * *
714298 AAAATCATTTCTAGAATCCATGTTTGTCTCATTTGAGGCAC-AAACTTAGACTTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * * * * *
714362 GTGGGAAGAAAGCTTTTCTGGTGAAACCAAGGGATCAATATCATATATCCTTATAAGAAGACTAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * * *
714427 GTTTATGGGGCC-AAATCTTAAAAATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
130 GTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * *
714491 AGATACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCAT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * ** * *
714556 CAATGTCATGTATCGTAACAAAGCGAATATGTTCCTGCTTCCCAATCTTGAAAAAAATGGAGACT
259 CAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* ** * * ** * * *
714621 GTTACGAGAATCAATACTTATCATATCTAACAGTTGAACTTTTATTTTAAGGAAAATAGGGCAAT
323 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * *
714686 GAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCAAATGAGAAAAATGTGTTTAT
388 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
*
714750 AGTGCCTAATCATAAAGTGAATG
453 AGTGCCTAATCACAAAGTGAATG
* * * * * * * * *
714773 AAGATCATTTCTA-AAGTGCATGTTTGGCACACTTGAGGAACGAAATTAGGC-TTAGAAAACTTA
1 AAGATCATTACTAGAA-TCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTG
* * * * * * * *
714836 GCGGGAAGAAAACCTTTCCTACGAAATCAAAGCATCAATATCGTGTTTCTTTATGAGAAGACTAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * * * *
714901 GTTTAT-ATGCC-AAATCCTGAAAAGAATGGGGAATA-TATGACTTTTCATGTTTATCATATTTA
130 GTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
714963 AAAGACAAACTTTGATTCTATCAAAAATGGTTGAAAAAAATGCTTTTCTTGTGACACCAAATCAT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * *
715028 CAATGTCATGTATCCTAATAAAAGGAATGTATTTTTGGTTCCCAATTTTGAGAAGAGTGGAGACT
259 CAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
715093 GTTACGAGAATCAATGCGTGCCTTATTTAAGGGAGGAACTTTGATTTTAAGAAAAAT-GCGACAA
323 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAA
* * * * * * *
715157 AGAATAGATTTTCATGCAAAAGAATACCATCAATATCATTTATCCTAATAAAGAGAATATGTTTA
387 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
715222 TAGTGCCTTATCACAAAATGAATG
452 TAGTGCCTAATCACAAAGTGAATG
* * ** * *
715246 AAGTTCATTACTAGAATTCATGTTTGTCACCTTTAAGGCACGAAATTAGACTTTACAAAAATTAG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * ** * * *
715311 TGGGAAGAAAGCCTGTCTTGCAAAACCAAAGTGTCAATATTGTATATCTTTATAAGAAGACTATG
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
* * * *
715376 TTTATGGTGCCTAAAACTAAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTTTTATTTAAG
131 TTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * *
715441 AGACAAACTTTGATTCTATAAAAAATGGTTGAAAGAGATGCTTTTCTTGTGACACCAAAGCGTCA
196 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
* ** *
715506 ATGCCATGTATCCTAATGAAAGGAATGTGTTTTTATTTCCCAGTCTTGAAAAGAATGGAGACTGT
261 ATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
** *
715571 TACGAGAATCAATGCTTATCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
325 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * *
715636 AAAGATTTTCACGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTAGATGTA-
390 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT-G-TTTAT
*
715700 A-TGCACTAATCACAAAATGAATG
453 AGTGC-CTAATCACAAAGTGAATG
* *** * *
715723 AAGATCATTACTAGAATCCATGTTTGTCATAATTGAGATGCGAACTTGGACTTTACAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * *
715788 T-GGAGGAAAGCCTTTCCTGC-AAAGCCAAAGCATCAATATCGTATATCCTTATAAGAAGACTAT
66 TGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * * * * *
715851 GTTTATGGTGCCTAAACTTGAAAAGAATGTGGATTGGTATAACTATTCATATTTTGCCTTATTTA
130 GTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCAT-GTTTGTCTTATTTA
** * * * ** *
715916 AGAGATGAACTTTGATTTTATCAAAAACAGTTGAAAGAAATACTTTTCTTATGACACCAAAGCGT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * * * *
715981 CAATGTCATGTATCCTAGTGAAAAGAATGTATTTTT--TTCCCCAATCATGAAAAGAATGGACAT
259 CAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTT-CCCAATCTTGAAAAGAATGGAGAC
* * * * * *
716044 TATGACGAGAATCAATGCTTGTCTTACTTAAGGGATAAACTTT-AGTTTTAAGAAAAATAGGGCA
322 TGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCA
* *
716108 AAG--AA-A-----AT-C---------T--TCAATAACATTTATCCTAACGAGGAGAATGTGTTT
386 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
716153 ATAGTGCCTAA-CACAAAGTGAATG
451 ATAGTGCCTAATCACAAAGTGAATG
* ** * *
716177 AAGATCATTACTAGAATCCATGTTTGTCACAATTAAGGTGC-AAACGTAGAATTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * * *
716241 GCAGGGGA-AAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAGCCTA
65 G-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTA
* * ** * *
716305 TGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAAAATGACTATTTATATTTGTCTTATTTA
129 TGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * *** *
716370 AGAGACAAACTTTGATTTTATCAAAAATGACAGAATA-AAA-GCTTTTCTTGTGACACCAAAGCA
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAA-AGAAATGCTTTTCTTGCGACACCAAAGCA
* * * * *
716433 TCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTAGCTCCCAA-CTTGAAAAGAGTAGAGAC
258 TCAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** * * *
716497 TATTACGAGAAT-AGATGCTTGTCATAATTAAGAGATGAGTTTTTATTATATGGAAAATAGGGCA
322 TGTTACGAGAATCA-ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * *
716561 AA-AAAAGATTTCCTTGCCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTT
386 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
***
716625 ATAGTGCCTAATCATTGAGTGAATG
451 ATAGTGCCTAATCACAAAGTGAATG
* * * * *
716650 AAGATCATTA-TTGAATCCATATTTATCCCAACTGAGGCAC-AAACTTAGACTTTACAAAAATTA
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATT-
* ** * * * * **
716713 GGT-GTAAGAAAGGTTTTCTTGTGAAACCAAAGGATCAATATTGTGTATTTTTATGAGAAGACTA
64 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTA
* *
716777 TGTTTATGGTGCC-AAATCCTGAAAAGAATGGCGATTAGGATGACTATTCATGTTT-TCCTTATT
129 TGTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT-CTTATT
* * * * * * *
716840 TAAGAGACAAACTTTGATTTTATCATAAACGGTTGAAATAAATACTTTTCTTGCAACACGAAAGT
192 TAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGC
* * * *
716905 ATCAATGTCATGTA-CACTAATTAAAGTAAAGTGTTTTTGGGTCCCAATCCTGAAAA-AATGGAG
257 ATCAATGTCATGTATC-CTAA-TAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * * * *
716968 ACTGTTACAAGAAATCAATGTTTCCCTTCTTTAAAGGATGAATTTTGATTCTAAGGAAAATAGGG
320 ACTGTTACGAG-AATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * *
717033 CAAAGAAAAGATTTCCATGCAAAAAAAAAAATCATCAATGTCATTTATCTTAATGAGGAGAATGT
384 CAAAGAAAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
717098 GTTTGTAGTACGTAATCAGAAAATGAATG
447 GTTTATAGTGCCTAATCACAAAGTGAATG
* ** * * *
717127 AAAATTGTTACTAGAATCCATGTTTGTCTCATTTAAGGCAC-AAACTTAGACTTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * *
717191 GTGGGAAGAAAGCCTTTCTTGCAAAATCAAAGCATCAATATCGTATATGCC-TATAAAAAGACTA
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATAT-CCTTATGAGAAGACTA
* * * *
717255 TGTTTATGTTGCC-AAATCCTGAAAAGAATGGCGATTAGGATGACTTTTCATGTTTGTCTTATTT
129 TGTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * *
717319 AAGTGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTTGCGACACCAAAGTA
193 AAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCA
** * * * *
717384 TCAATGTCATGTAAACTAATTAAAGTAATGTGTTTTTGGGTCCCAATCCTGAAAATAATGGAGAC
258 TCAATGTCATGTATCCTAA-TAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * *
717449 TGTCACAAGAAATCAATGTTTCCCTTCTTTAAGGGATGAATTTTGATTCTAAGGAAAATAGGGCA
322 TGTTACGAG-AATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
717514 AAGAAAAGATTTCCATGCAAAAGAAAAAATCATCAATGTCATTTATCTTAATGAGGAGAATGTGT
386 AAGAAAAGATTTCCATGCAAAAG--AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * **
717579 TTGTAGTGCCTAATCAGAAAACGAATG
449 TTATAGTGCCTAATCACAAAGTGAATG
* ** * * * *
717606 AAAATTGTTACTAGAATCCATGTTTGTCTCATTTAAGGCAC-AAATTTAGACTTTACCAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * * * *
717670 GTGGGAAGAAAGCCTTTCTTGCAAAATCAAAGCGTGAATATCGTATATCCTTATAAAAAGACTAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * * * * *
717735 GTTTATGGTG-CTAAATCCTAAAAAGAATGGCGATTAGGATGACTTTTCATATTTGTCTTTTTTA
130 GTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
717799 AGTGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTGTTGCGATACCAAAGCAT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * *
717864 CTATGTCATGTATCCTAATGAAAGTAATGTGTTTTTGGGTCCCAATCTTGAAAAGAGTGGAGAC-
259 CAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * * * * *
717928 GATTACAAGAATCAATGCTTGCCTTCTTTAAGGGTTAAACTTCGATTTTAAGGAAAACAGAGCAA
323 G-TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * *
717993 ATAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTG
387 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * **
718058 TAGTGCCTAATTAGAAAACGAATG
452 TAGTGCCTAATCACAAAGTGAATG
* * * *
718082 AAAATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCAC-AAACTTAGACTTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * *
718146 GTGGGAAGAAAG-TTTTCTTGCGAAACCAAAGCGTCAGTATCGTATATCCTTAGGAGAAGACTAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * * * *
718210 GTTTATGGTGCCTAATCCTAAAAAGAATGTGGATTAGT-TAACTGTTCATGTTTGTCTTATTTAA
130 GTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
*** * * * * * *
718274 GAGATGGATTTTGATTCTGTCAAACATGG-T---CGAAA------TCTTGCGACACCAAAGCGTC
195 GAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATC
* ** * ** * * * * *
718329 AATGTCATATATCCTTGTGAAAGGAATGTGTCTTTGGAACCTAATCATGAAAAGAATGGACATTA
260 AATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * *
718394 TGACGAGAATCAACGCTTGCCTTACTAAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG
324 TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
718459 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCCTTTATCCCAATGAAGAGAATGTGTTTATA
389 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
718524 GTGCCTAATCACAAAGTGAATG
454 GTGCCTAATCACAAAGTGAATG
* ** *
718546 AAGATCATTACCCA-AATCCATGTTTGTCACAATTGAGGTGCGAAATAAGACTTTACAAAAATTG
1 AAGATCATTA-CTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTG
** * ** * * *
718610 GT-CAAAGGAAAGCCTTTCCTATGAAACCAAAGCATCAATATTGTGTATCCCTATGAGAAGACTA
65 GTGGGAA-GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTA
* * *** * * * * *
718674 TGTTTATGATGCCTAATCCTGTGCAGAATGGGGATTGGAATGACTTTTTATGTCTGTCTTATTTA
129 TGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
718739 AGAGACAAA-TTTGATTCTATCAAAAACAGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCAT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * * * * * * *
718803 C-ATAGTCAAGTGTCCTAATAAAGAGAATGTGTTCTTAGCTCCTAATTTTGAAAGGAATGGAGAT
259 CAAT-GTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * *
718867 TGTTATGAGAATCGATGCTTGTCATT-TTTAAGGGATGAATTTTTTATTTT-AGGAAAAATGGGG
322 TGTTACGAGAATCAATGCTTG-CCTTATTTAAGGGATGAA-CTTTGATTTTAAGG-AAAATAGGG
* * * *
718930 CAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGACAATGCGT
384 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
718995 TTATAGTGCCTAATCACAAAGTGAATG
449 TTATAGTGCCTAATCACAAAGTGAATG
* * * * * * *
719022 AAGATAATTACAAGAATCCACGTTTGTCACAACTGCGGCACGAACTTAAACTTTACAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * * * * *
719087 AGGAAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCGTGTATCCTTATGAGAAGATTATG
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
* ** * * *
719152 TTTATGGTGCC-AAATCGTGAAAAGAATGGAAATTA-AATTGACTATTCTTGTTTGACTTATTTA
131 TTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTTGTCTTATTTA
* * ** * * *
719215 GGAGTCAAACTTTGATT-TAAAAAAAAACGATT-AAAAAAATGCTTTTCTTGCGACATCAAAGCA
194 AGAGACAAACTTTGATTCT-ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCA
* * *
719278 TCAATGTCATGTATCGTAATGAAAGGAATGTTTTTTTGGTTCCCAATCTTGAAAAGAATAGAGAC
258 TCAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* ** * * *
719343 TATTACGAGAATCAATACTTGCTTGCCTTATTTTTGGGATAAACTTTGATTTTAAGAAAAATAAG
322 TGTTACGAGAATC-A-A--TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* * * * * * *
719408 GCGAAGAAAAGATTTTCACGCAAAAGGAAATCATTAATATGATTTATCATAATGAGGAGAATGTG
383 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
719473 TTTACAGTGCCTAATCACAAAATGAATG
448 TTTATAGTGCCTAATCACAAAGTGAATG
* * * *
719501 AAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCAC-AAACTTAGACTTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * * * *
719565 GTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATATATCCTGATAAGAAGACTAA
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* * * * * *
719630 GTTTATTGTGCCTAATA-CTGAAAATAATGGGGATTAGTATAACTATTCATGTCTGCCTTTTTTA
130 GTTTATGGTGCCTAA-ACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
719694 AGAGACAAACATTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCTTGTGACACCAAAACAT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * * *
719759 CAATGTCATGTATCATAATAGAGAAAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACT
259 CAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* *** * * * *
719824 GTTACGAGAATCGATGCTTGTAATATTTAAGGGATGAATTTTTG-TTTGAAGGAAAATGGGGTAA
323 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAATAGGGCAA
* *
719888 AGAAAAGATTTCCATGCAAAA-AAAATCATTAATATCATTTATCCTAAAG-GCGAGAATGTGTTT
387 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG-GAGAATGTGTTT
*
719951 ACAGTGCCTAATCACAAAGTGAATG
451 ATAGTGCCTAATCACAAAGTGAATG
* * * * *
719976 AAGATAATTACTAGAATCCATGTTTGTCATAATTGAGGCATGAACTTAGACTTCACAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * * *
720041 TGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCGTGTATCCCTATGAGAAGACTATG
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
* * * * *
720106 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTATGTTATTTAAG
131 TTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
** * * ** * *
720171 AGATTAACTTTGATTCTATCAAAAACAGTTGAAACAAATGCTTTTCTTATGACACCAAAGCGTTA
196 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
* * * * *
720236 ATGTCTTGTATCCTAGTGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGACACTAT
261 ATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * *
720301 GATGAGAATCAACGCTTGCCTT-TCTCAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
325 TACGAGAATCAATGCTTGCCTTAT-TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
720365 AAAAGATTTCTACGCAAAAGAAAATTATCAATATCATTTATCCTAAT-AGGGAGAATGTGTTTAT
389 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTAT
* *
720429 AGCGCCTATTCACAAAGTGAATG
453 AGTGCCTAATCACAAAGTGAATG
* * * *
720452 AAGACCATTACTAGAATCCATGTTTGTCACAATT-AAG-ATGTAAACTTAGACTTTACAAAAACT
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACG-AAA-TTAGACTTTACAAAAATT
* ** * * * *
720515 GGCGGGGGGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCCTATGAGAAAACTA
64 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTA
* * * * * *
720580 TGTTTATGGTGCCTAATCCTAAAAAGATTGGGGATTA-AATTAACTATTCATATTTGTCTTATTT
129 TGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTTGTCTTATTT
* * * *
720644 AAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTACGACACCAAAGCA
193 AAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCA
* * * * * *
720709 TCGATGTCATGTATCCTAATAAAGAGAATGTGTTCTTAGCTT-CCAATCTTGAAAATAATAGAAA
258 TCAATGTCATGTATCCTAATAAAG-GAATGTGTT-TTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * ** * * *
720773 CTGTTACAAGAATCAATGCTTGTCATATCTAAGGGCTGAGTTTTTATTTTATGGAAAATATGGCA
321 CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * **
720838 AAGAAAAAATTTCCTTGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAAAATAAGTTT
386 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * *
720902 ATAGAGCCTAATCATAGAGTGAATG
451 ATAGTGCCTAATCACAAAGTGAATG
** * * *
720927 AAGATCATTACTAGAATAAATGTTTGTCACAATTAAGGCATGAATTTAGACTTTACAAAAATTGC
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTG-
* * * * * * *
720992 GT-GGAAGACAGACTTTCTTGCGAAACTAAATCATCAATATCATGTATCCTTATGAGATGACTAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
* ** * *
721056 GTTTATGGTGCC-AAATCTGAAAAAGAATGACGATTAGTATGACTATTCATGTTTGCCTAATTTA
130 GTTTATGGTGCCTAAACCTG-AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * *
721120 AGAGACAAACTTTGATTTTATCAAAAACGGTTGAAAGAAATG-TGTTTCCTACGACACCAAAGCA
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCT-TTTCTTGCGACACCAAAGCA
* * * *
721184 TCAATGTCATGTATCCTAATAAAAGTAATGTATTTTT-GTGTCCCAATCTTGAAAAGAGTGGAAA
258 TCAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGT-TCCCAATCTTGAAAAGAATGGAGA
* * * * * *
721248 CTGTTACGGAGAATTAAAGCTTGCCTTCTTTAGGGGATGAACTTTGATTTTAAGGAAACTAAGGC
321 CTGTTAC-GAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * *
721313 AAAGAAATGATTTCCATGCCAAA-AAAA--A-C----TCATTTATCTTAATGAGGAGAATGTGTT
385 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
721370 TACAGTGTCTAATTAGAAAATGAATG
450 TATAGTGCCTAATCACAAAGTGAATG
* * * * *
721396 AAAATCCTTACTAGAATCCATGTTTGTCTCATTTAAGGCAC-AAACTTAGACTTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* * *
721460 GTGGGAAGAAAACCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATAAGAATACTAT
65 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTAT
** * *
721525 GTTTATAATGCCTAATCCTGAAAA-AA-GTGGGATTAGTATAACTATTCATGTTTGTCTTATTTA
130 GTTTATGGTGCCTAAACCTGAAAAGAATG-GGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * ** *
721588 AAAGACGAACTTTGATTCTATCAAAAACGGTTGAAAGAAATACTTTTCTTGCGACGTCAAAGCGT
194 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * * ** * *
721653 CAATGTCATGTATCCTAGTGAAAAGAATGTGATTTTGGTTCCCAATCATGAAAATTATGGACACC
259 CAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * * * * * * *
721718 GTGACAAGGATCAACGCTTGCCTTACTTAAGAGCTGAACTTTGATTTTACGAAAAATAGGGCAAA
323 GTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * * * *
721783 GAAAAGATTTCCATTCAAAAGAAAATTAGCCATATCATTTATCCTAATGATGAGAATGTGTTTAT
388 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* *
721848 GGTGCCTAAACACAAAGTGAATG
453 AGTGCCTAATCACAAAGTGAATG
* *
721871 AAGATCATTACTAGATTCCATGTTTGTCACAATTGAGGCGCGAAATTAGACTTTAC-AAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * * * * ** * * *
721935 TGGGAGGAAAGCCTTTCCTACAAAACCAAAGCTTCAATATCGTGCATCCTTACGGGAATACTATG
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
* * * * * *
722000 TTTATGGTGCCTAATCCT-ATAAAGAATAGGGATTGGAATGACTATTCATGTCTGTCTTATTTAT
131 TTTATGGTGCCTAAACCTGA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * * * * *
722064 GAGATAAACTTTGATTCTATGAAAAA-GAATGGAATGAAAAGCATTTCTTGTGACACCAAAGCAT
195 GAGACAAACTTTGATTCTATCAAAAACG-GTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCAT
* * * * * * * *
722128 CAATATCAAGTATCCTAATAAAGAGAATGTATTCTTAGCTCTCAATCTT-AAAAGAAATGGAGAT
259 CAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAG-AATGGAGAC
* * * * * *
722192 TGTTACGAGAATCTATGCTTGTCATATTTAAAGGATGAATTTTTTATTTTAAGGAAAATAGGGCA
322 TGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAATAGGGCA
* *
722257 AGGAAAAGATTTCCATGCAAAAGAAAATC-TCCAATACCATTTATCCTAATGAGGAGAATGTGTT
386 AAGAAAAGATTTCCATGCAAAAGAAAATCAT-CAATATCATTTATCCTAATGAGGAGAATGTGTT
* *
722321 TATCGTGCCTAATCACAAAGTGAACG
450 TATAGTGCCTAATCACAAAGTGAATG
* * * * *
722347 AAGATCTTTACTAGAATCCATGTTTGTCAGAATTGAGGCACGAACTTAAACATTACAAAAATTGA
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTG-
* * * * *
722412 G-GGAAAGAGAAACCTTTCTT-CTAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
65 GTGGGAAGA-AAGCCTTTCTTGC-GAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACT
*** ** * * * * * * * *
722475 ATGTTCGCGGCACC-AAATCTTGAAATGAATTGGGATTAGTATAACTACTCTTATTTGTCATATT
128 ATGTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
722539 TAAGAGACAAACCTTGATTTTATCAAAAATGGTTGAAGGAAATGGTTTTCTTGCGACACCAAAGC
192 TAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGC
* * * * *
722604 ATCAATGTCATG-ATCGTAATGAAATGAATTTGTTTTTGGTTCCCAATCTTGAAAATAATAGAGA
257 ATCAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * ** **
722668 CTATTACAAGAATCAAAGCTTGCTTGGTTTATTTCTGGGATGAACTTTGATTTTAAGGAAAATAG
321 CTGTTACGAGAATC-AA---TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * * * *
722733 GGGAAAGAACAGATTTCTATGCAAAAGAAAATCATTAATATGATTAATCCTAATGAGGAGAA-CT
382 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * ***
722797 GTTTATAGTGCCTAATTAGAAAACAAATG
447 GTTTATAGTGCCTAATCACAAAGTGAATG
* * * * * *
722826 AAGTTCATTACTAGAATCTATGTTTGTCTCATTTGATGCAC-AAATTTTGACTTTACAAAAATTG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAA-TTAGACTTTACAAAAATTG
* *
722890 GTGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATACCGTATAT-CTTAATAAGAAGACT
65 GT-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTT-ATGAGAAGACT
* * * *
722954 AAGTTTATGGTGCC-AAATCCTGAAGAGAATGGGTATTAGTATAACTATTCATGTTTGTCTTATT
128 ATGTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * *
723018 TAAAAGAAAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGGCACTAAAGC
192 TAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGC
* * *
723083 ATCAATGTCATGTATACTAATAAAGAGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
257 ATCAATGTCATGTATCCTAATAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * * * * *
723148 TTGTTACGAGAA-CGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTATGGAAACTGGGGCA
321 CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
** * *
723212 AAGAAAA-ATTTTTATGCAAAAGAAAATCATCAATATCATTTATCGTAATGTGGAGAATGTGTTT
386 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* *
723276 ATAGTGCCTAATCATAAAGTGAACG
451 ATAGTGCCTAATCACAAAGTGAATG
* * * * * *
723301 AAGATCATTACTAGAATCTATGTTTGTCGCAATTGAGGCATGAACTTAGGCATTACAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * * * * *
723366 TGGGAAGAAAGCCATTCTTGTGAAACCAGAGCATCAATATCACGTAT-T-CTTATAAGAAAACCA
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT--CGTATATCCTTATGAGAAGACTA
* * * *
723429 TGTTTATGGTGCCTAATCTTGTAAAA-AATGGGGATTAGAATGACTATTCTTGTTTGTCTTATTT
129 TGTTTATGGTGCCTAAACCTG-AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * *
723493 AAGAGACAAACTTTGATTGTATCAAAAAC-GATGAAAAAAAAAGCTTTTCTTGCGACACCAAAGC
193 AAGAGACAAACTTTGATTCTATCAAAAACGGTTG-AAAGAAATGCTTTTCTTGCGACACCAAAGC
* * *
723557 ATCAATATCATGTATCCTAATAAAAGGATTGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGA
257 ATCAATGTCATGTATCCTAAT-AAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * *
723622 CTGTTACGAGAATCAATGCTTGCCTTGTTAAAGGGAAGAAGTTTGATTTTCAGGAAATTAGGGCA
321 CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * *
723687 AAGAAAAGATTTTCATGGAAACGAATA-CTTTCAATATCATTTATCCTAATGAGGAGAATGTGTT
386 AAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
723751 TATAATACCTTATCACAAATTGAATA
450 TATAGTGCCTAATCACAAAGTGAATG
* * **
723777 AAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGACTTGGCAAAAATTGG
1 AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
* * *
723842 TGGCAGGAAAGCCTTTCTTGCGACACCAAAGCATCAAT
66 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
723880 GTCATGTATC
Statistics
Matches: 9220, Mismatches: 1561, Indels: 461
0.82 0.14 0.04
Matches are distributed among these distances:
452 4 0.00
453 116 0.01
454 121 0.01
455 98 0.01
456 37 0.00
458 1 0.00
460 1 0.00
461 1 0.00
463 2 0.00
464 252 0.03
465 93 0.01
466 27 0.00
467 65 0.01
468 149 0.02
469 168 0.02
470 11 0.00
471 48 0.01
472 486 0.05
473 223 0.02
474 716 0.08
475 1547 0.17
476 1830 0.20
477 1061 0.12
478 639 0.07
479 1210 0.13
480 294 0.03
481 20 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAAATTAGACTTTACAAAAATTGG
TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTATG
TTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
ACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
GCCTAATCACAAAGTGAATG
Found at i:724113 original size:317 final size:317
Alignment explanation
Indices: 723531--724213 Score: 942
Period size: 317 Copynumber: 2.2 Consensus size: 317
723521 CGATGAAAAA
* * * * *
723531 AAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATAAAAGGATTGTGTTTTTG
1 AAAAGCCTTTCTTGCGACACCAAAGCATCAATATCATGTATCCCAATGAAAGGAATATGTTTTTG
* * * * *
723596 GTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTGTTAAAGGGAAGA
66 GTTCCCAATCATGAAAAGAATGGACACTGTAACGAGAATCAATGCTTGCCTTCTTAAAGGGAAGA
* * ** * * *
723661 AGTTTGATTTTCAGGAAATTAGGGCAAAGAAAAGATTTTCATGGAAACGAATACTTTCAATATCA
131 AGTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATCCAAAAGAAAACTATCAATATCA
* * * *
723726 TTTATCCTAATGAGGAGAATGTGTTTATAATACCTTATCACAAATTGAATAAAGATCATTACTAG
196 TTTATCCTAATGAGAAGAATGTGTTTATAATACCTGAACACAAAGTGAATAAAGATCATTACTAG
* *
723791 AATCCATGTTTGTCATAATTGAGGCACGA-ACTTAGACT-TGGCAAAAATTGGTGGCAG
261 AATCCATGTTTGTCATAATTGAGGCACGACA-TTAGACTAT-ACAAAAATTGGTGGAAG
* *
723848 GAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCCAATGAAAGGAATATGTTTTTG
1 AAAAGCCTTTCTTGCGACACCAAAGCATCAATATCATGTATCCCAATGAAAGGAATATGTTTTTG
* *
723913 GTTCCCAATCATGAAAAGAATGGACACTGTAATGAGAATCAATGCTTGCCTTACTT-AAGGGATG
66 GTTCCCAATCATGAAAAGAATGGACACTGTAACGAGAATCAATGCTTGCCTT-CTTAAAGGGAAG
* * *
723977 ATGTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATCCAAAAGAAAA-TCATCCATAT
130 AAGTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATCCAAAAGAAAACT-ATCAATAT
* * *
724041 CATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTGAACACAAAGTGAATGAAGATCATTACT
194 CATTTATCCTAATGAGAAGAATGTGTTTATAATACCTGAACACAAAGTGAATAAAGATCATTACT
*
724106 AGAATCCATGTTTGTCATAATTGAGGCGCGACATTAGACTATACAAAAATTGGTGGAAG
259 AGAATCCATGTTTGTCATAATTGAGGCACGACATTAGACTATACAAAAATTGGTGGAAG
* ** * * *
724165 AAAAGCCTTTCCTATGAAACCAAAGCTTCAATATCATGTATCCCTATGA
1 AAAAGCCTTTCTTGCGACACCAAAGCATCAATATCATGTATCCCAATGA
724214 GAAGACAATG
Statistics
Matches: 320, Mismatches: 42, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
316 1 0.00
317 315 0.98
318 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (317 bp):
AAAAGCCTTTCTTGCGACACCAAAGCATCAATATCATGTATCCCAATGAAAGGAATATGTTTTTG
GTTCCCAATCATGAAAAGAATGGACACTGTAACGAGAATCAATGCTTGCCTTCTTAAAGGGAAGA
AGTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATCCAAAAGAAAACTATCAATATCA
TTTATCCTAATGAGAAGAATGTGTTTATAATACCTGAACACAAAGTGAATAAAGATCATTACTAG
AATCCATGTTTGTCATAATTGAGGCACGACATTAGACTATACAAAAATTGGTGGAAG
Found at i:725170 original size:269 final size:268
Alignment explanation
Indices: 724656--725183 Score: 702
Period size: 269 Copynumber: 2.0 Consensus size: 268
724646 TAAGTTTATA
* *
724656 GTGCCTAATCCTGAAAAAAATGGGCATTAATATGACTATTCATGTTCACCTTATTTAAAAGACAA
1 GTGCCTAATACTGAAAAAAATGGGCATTAATATAACTATTCATGTTCACCTTATTTAAAAGACAA
* *
724721 ACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAGACCAAAGAATTAATGTCA
66 ACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGAATCAATGTCA
* * *
724786 TGTATCCTAATGAAAAGAATGCGTTTTTGGTTCCTAATCTTGAAAAGAATAGAGATTGTTGCGAG
131 TGTATCCTAATGAAAAGAATGCGTTCTTGGTTCCTAATCTTGAAAAGAATAGAGACTGTTACGAG
* * * *
724851 AATCAATCCTTGCATTATTTATGGGATGAACATTGATTTTATGAAAAATAGGGCAAAGAAAAGAC
196 AATCAATCCTTGCAATATTTAAGGGACGAACATTGATTTTAAGAAAAATAGGGCAAAGAAAAGAC
724916 TATTTTTG
261 TATTTTTG
* * * * *** *
724924 GTGCCTAATACTGAAAAGAATGGGGATTAGTATAAACTATTCGTGTTTGTCTTATTTAAGAGACA
1 GTGCCTAATACTGAAAAAAATGGGCATTAATAT-AACTATTCATGTTCACCTTATTTAAAAGACA
* * * *
724989 AATTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTC
65 AACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGAATCAATGTC
* * *
725054 ATGTATCCTAAT-AAAGAGAATGTGTTCTTGGCTTTC-AATCTTGAAAAGAATGGAGACTGTTAC
130 ATGTATCCTAATGAAA-AGAATGCGTTCTTGG-TTCCTAATCTTGAAAAGAATAGAGACTGTTAC
* * * ** * *
725117 GAGAATCGAT-GTTTCTAATATTTAAGGGACGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAA
193 GAGAATCAATCCTTGC-AATATTTAAGGGACGAACATTGATTTTAAGAAAAATAGGGCAAAGAAA
725181 AGA
257 AGA
725184 TTTCCATGCA
Statistics
Matches: 223, Mismatches: 33, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
268 35 0.16
269 185 0.83
270 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (268 bp):
GTGCCTAATACTGAAAAAAATGGGCATTAATATAACTATTCATGTTCACCTTATTTAAAAGACAA
ACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGAATCAATGTCA
TGTATCCTAATGAAAAGAATGCGTTCTTGGTTCCTAATCTTGAAAAGAATAGAGACTGTTACGAG
AATCAATCCTTGCAATATTTAAGGGACGAACATTGATTTTAAGAAAAATAGGGCAAAGAAAAGAC
TATTTTTG
Found at i:726054 original size:475 final size:472
Alignment explanation
Indices: 724911--726071 Score: 1484
Period size: 475 Copynumber: 2.5 Consensus size: 472
724901 GGGCAAAGAA
*
724911 AAGACTAT-TTT-TGGTGCCTAATA-CTGAAAAGAATGGGGATTAGTATAAACTATTCGTGTTTG
1 AAGACTATGTTTATGGTGCCTAA-ACCTGAAAAGAATGGGGATTAGTAT-AACTATTCATGTTTG
*
724973 TCTTATTTAAGAGACAAATTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTGACA
64 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTGACA
725038 CCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTTTCAATCTTGAAAAGA
129 CCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGC-TTCAATCTTGAAAAGA
* ** *
725103 ATGGAGACTGTTACGAGAATCGATGTTTCTAATATTTAAGGGACGAATTTTTATTTTAAGGAAAA
193 ATGGAGACTGTTACGAGAATCAATACTTCTAATATCTAAGGGACGAATTTTTATTTTAAGGAAAA
*
725168 TAGGGCAAAGAAAAGATTTCCATGCAAAAAATCATCAATATCATTTATCCTAATGAGGAGACTAT
258 TAGGGCAAAGAAAAGATTTCCATGCAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATAT
** *
725233 GTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGATTGTCACAATTGA
323 GTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGATTGTCACAATTAA
* * * * * *
725298 GGCACGAACTTAGACTTTTCAAAAATTGGTAGGAAGAAAACCTTTTTTTCGAAAGCAAAGCGCCA
388 GGCACAAACTTACACTTTACAAAAATTGGTAGGAAGAAAACCTTTTTGTCGAAACCAAAGCACCA
* *
725363 ATATCGTGTATCCTTATCAG
453 ATATCGTATATCCTTATAAG
* * * * ** ** * *
725383 AAGGCAATGTTTATGGTGCC-AAATCTTGAAAAGATTGTAGATTAGTATTGCCATTCATATTTGT
1 AAGACTATGTTTATGGTGCCTAAA-CCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGT
* * * * * * *
725447 CTTATTGAAGAGACAAACTCTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTCCTCGTGACAC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTGACAC
*
725512 CAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTTTAATCTTGAAAAGAAT
130 CAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTTCAATCTTGAAAAGAAT
* * * *
725577 GGAGACTGTTACGAGAATCAATACTTGTCATATCTAAGGGATGAATTTTTATTTTAAGGAAAATG
195 GGAGACTGTTACGAGAATCAATACTTCTAATATCTAAGGGACGAATTTTTATTTTAAGGAAAATA
* * * *
725642 GGGCAGAGTAAAGATTTTCATGCAAAAGAAAGTCATCAATATCATTTATCCTAATGAGGAGAATG
260 GGGCAAAGAAAAGATTTCCATGC-AAA-AAA-TCATCAATATCATTTATCCTAATGAGGAGAATA
* * * * * * *
725707 TGTTTATAGTTCCTAATCTCAAAACGAATGAAGATCATTACT-GCATTCCTTGTTTGTCTCATTT
322 TGTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAG-AATCCATGATTGTCACAATT
*
725771 AAGGTACAAACTTACACTTTACAAAAATTGGT-GAGAA-AAAAGCCTTTCTTGT-GAAACCAAAG
386 AAGGCACAAACTTACACTTTACAAAAATTGGTAG-GAAGAAAA-CCTTT-TTGTCGAAACCAAAG
** *
725833 CATTAATATCGTATATCCTTTTAAG
448 CACCAATATCGTATATCCTTATAAG
*
725858 AAGACTATGTTTATGGT-CCTAAACCTAAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTC
* * * * *
725922 TTATTTAAGAGACAAACTTTCATTCTTTCAAAAACGGTTGAAA-AAGCTGCTTTTCTTGCGACAC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAA-ATGCTTTTCTTGTGACAC
* * * *
725986 CAAAACTTCAATGTCATGTATCCTAGTGAAAG-GAATGTGTT-TTGGGTTCCCAATCTT-AAAAG
130 CAAAGCATCAATGTCATGTATCCTAAT-AAAGAGAATGTGTTCTTGGCTT--CAATCTTGAAAA-
* *
726048 GAATGGAGACTGTGATGAGAATCA
191 GAATGGAGACTGTTACGAGAATCA
726072 TCAATATCAT
Statistics
Matches: 587, Mismatches: 85, Indels: 31
0.83 0.12 0.04
Matches are distributed among these distances:
472 101 0.17
473 131 0.22
474 155 0.26
475 197 0.34
476 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
AAGACTATGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTGACACC
AAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTTCAATCTTGAAAAGAATG
GAGACTGTTACGAGAATCAATACTTCTAATATCTAAGGGACGAATTTTTATTTTAAGGAAAATAG
GGCAAAGAAAAGATTTCCATGCAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTT
TATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGATTGTCACAATTAAGGC
ACAAACTTACACTTTACAAAAATTGGTAGGAAGAAAACCTTTTTGTCGAAACCAAAGCACCAATA
TCGTATATCCTTATAAG
Found at i:726404 original size:395 final size:395
Alignment explanation
Indices: 725674--726466 Score: 1143
Period size: 395 Copynumber: 2.0 Consensus size: 395
725664 CAAAAGAAAG
* * *
725674 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTTCCTAATCTCAAAACGAATGAA
1 TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCCCAAAACGAATGAA
* * *
725739 GATCATTACTGCATTCCTTGTTTGTCTCATTTAAGGTACAAACTTACACTTTACAAAAATTGGTG
66 GATCATTACTACATTCCATGTTTGTCTCATTTAAGGCACAAACTTACACTTTACAAAAATTGGTG
* * * * *
725804 AGAAAAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCGTATATCCTTTTAAGAAGACTATGTT
131 AGAAAAAAGCCTTTCTTGCGAAACCAAACCATCAAAATCGTATATCCTTATAAGAAGACTATGTT
* * *
725869 TATGGTCCTAAACCTAAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGA
196 TATGGTCCTAAACCTAAAAAGAATGGAGATTAGTATAACAATTCATGCTTGTCTTATTTAAGAGA
* *
725934 CAAACTTTCATTCTTTCAAAAACGGTTGAAAAAGCTGCTTTTCTTGCGACACCAAAACTTCAATG
261 CAAACTTTCATTCTTTCAAAAACGGTTGAAAAAGATGCTTTTCTTGCGACACCAAAACGTCAATG
* * *
725999 TCATGTATCCTAGTGAAAGGAATGTGTTTTGGGTTCCCAATCTT-AAAAGGAATGGAGACTGTGA
326 TCATGTATCCTAATGAAAGGAATGTGTTTTGAGTTCCCAATCTTGAAAA-GAACGGAGACTGTGA
*
726063 TGAGAA
390 CGAGAA
*
726069 TCATCAATATCATTTATCCTAATTAGGAAAATGTGTTTATAGTGCCTAATCCCAAAACGAATGAA
1 TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCCCAAAACGAATGAA
* * *
726134 TATCATTACTACATTTCATGTTTGTCTCATTTGAGGCACAAACTTACACTTTACAAAAATTGG-G
66 GATCATTACTACATTCCATGTTTGTCTCATTTAAGGCACAAACTTACACTTTACAAAAATTGGTG
* * *
726198 GGAAGAAAGCCTTTCTTGCGAAACCAAACCATCAAAATC-T-TGATCCTTATGAGAAGACTATGT
131 AGAAAAAAGCCTTTCTTGCGAAACCAAACCATCAAAATCGTAT-ATCCTTATAAGAAGACTATG-
* * *
726261 TTTATGGTGCC-AAATCCTGAAAAGAATGGCAG-TTGGTATGACAATTCATGCTTGTCTTATTTA
194 TTTATGGT-CCTAAA-CCTAAAAAGAATGG-AGATTAGTATAACAATTCATGCTTGTCTTATTTA
* * *
726324 AGAGACAAACTTTGATT-TTATCAAAAATGGTTGAAATAA-ATGCTTTTCTTGCGACACCAAAGC
256 AGAGACAAACTTTCATTCTT-TCAAAAACGGTTGAAA-AAGATGCTTTTCTTGCGACACCAAAAC
*
726387 GTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAACGGAGA
319 GTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGAGTTCCCAATCTTGAAAAGAACGGAGA
*
726452 CTGTTACGAGAA
384 CTGTGACGAGAA
726464 TCA
1 TCA
726467 ATGCTTGCCT
Statistics
Matches: 355, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
392 1 0.00
393 19 0.05
394 47 0.13
395 281 0.79
396 7 0.02
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (395 bp):
TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCCCAAAACGAATGAA
GATCATTACTACATTCCATGTTTGTCTCATTTAAGGCACAAACTTACACTTTACAAAAATTGGTG
AGAAAAAAGCCTTTCTTGCGAAACCAAACCATCAAAATCGTATATCCTTATAAGAAGACTATGTT
TATGGTCCTAAACCTAAAAAGAATGGAGATTAGTATAACAATTCATGCTTGTCTTATTTAAGAGA
CAAACTTTCATTCTTTCAAAAACGGTTGAAAAAGATGCTTTTCTTGCGACACCAAAACGTCAATG
TCATGTATCCTAATGAAAGGAATGTGTTTTGAGTTCCCAATCTTGAAAAGAACGGAGACTGTGAC
GAGAA
Found at i:727615 original size:20 final size:19
Alignment explanation
Indices: 727592--727663 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
727582 CACTCCCAGA
*
727592 TGTATCGATACATACTACTT
1 TGTATCGATACATACT-CAT
* *
727612 TGTATCAATACATGCTCAT
1 TGTATCGATACATACTCAT
* *
727631 AGTATCGATACATGGAC-AAT
1 TGTATCGATACAT--ACTCAT
727651 TGTATCGATACAT
1 TGTATCGATACAT
727664 GAAACTGGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 13 0.31
20 28 0.67
21 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATACTCAT
Found at i:727735 original size:33 final size:34
Alignment explanation
Indices: 727693--727762 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
727683 CTATCACTGT
727693 TTGTATCGATACATG-GGACAA-TGTATCCATACA
1 TTGTATCGATACATGAGGA-AATTGTATCCATACA
* *
727726 TTGTATCGATACATGATGAAATTGTATCGATACA
1 TTGTATCGATACATGAGGAAATTGTATCCATACA
727760 TTG
1 TTG
727763 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 17 0.52
34 16 0.48
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (34 bp):
TTGTATCGATACATGAGGAAATTGTATCCATACA
Found at i:736363 original size:20 final size:19
Alignment explanation
Indices: 736294--736366 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
736284 CACTCCCAGA
* *
736294 TGTATCGATACATACTACTT
1 TGTATCGATACATGC-ACAT
* *
736314 TGTATCGAGACATGCTCAT
1 TGTATCGATACATGCACAT
* * *
736333 TGCATCAATACATGGACAAT
1 TGTATCGATACATGCAC-AT
736353 TGTATCGATACATG
1 TGTATCGATACATG
736367 AAATTGGCAG
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 14 0.34
20 27 0.66
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATGCACAT
Found at i:738994 original size:103 final size:102
Alignment explanation
Indices: 738808--739011 Score: 273
Period size: 103 Copynumber: 2.0 Consensus size: 102
738798 TATGCTAATG
* * ** *
738808 AGGAGAATGTATTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTG
1 AGGAAAATGTATTTACAGTGCCTAATCACAAAACGAATGAAGATCATTACTAAAATCCAAGTTTG
*
738873 TCACAATTGAGGCTCAAACTTAGGGTTTACGAAAAATA
66 TCACAATTGAGGCACAAACTTAGGGTTTAC-AAAAATA
* * * * *
738911 AGGAAAATGTGTTTACAGTTCCTAATCACAAAACGGATGAAGATCATTACTAGAATCTAAGTTTG
1 AGGAAAATGTATTTACAGTGCCTAATCACAAAACGAATGAAGATCATTACTAAAATCCAAGTTTG
* **
738976 TCTCGTTTGAGGCACAAACTTAGGGTTTACAAAAAT
66 TCACAATTGAGGCACAAACTTAGGGTTTACAAAAAT
739012 TGGTGGGAGG
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
102 6 0.07
103 81 0.93
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (102 bp):
AGGAAAATGTATTTACAGTGCCTAATCACAAAACGAATGAAGATCATTACTAAAATCCAAGTTTG
TCACAATTGAGGCACAAACTTAGGGTTTACAAAAATA
Found at i:739823 original size:970 final size:966
Alignment explanation
Indices: 737983--739878 Score: 2431
Period size: 970 Copynumber: 2.0 Consensus size: 966
737973 AAAGTGAATT
* * *
737983 AAGATCATTACTAGAATCCATGCTCGTCACAATTGAGGCGCGAACTTAGACTTTACAAAAATTGG
1 AAGATCATTACTAGAATCCAAGCTCGTCACAATTGAGGCACAAACTTAGACTTTACAAAAATTGG
* * ** * ** * * *
738048 TGGTAGGTAAGCCTTTCTTGCGAAACCAAGGTGTCAATATCGTGTATCCCTATGAGAAGGCGATA
66 TGGGAGGAAAGCCTTTCTTAAGAAACCAAAGCATCAATATCGTATATCCCTATAAGAAGACGATA
* * *
738113 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGAATGACTATTCATGTTTGTCTTATTTAAG
131 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAATAACTATTCATGGTTGTCTTATTTAAG
*
738178 AGAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTGCTTGAGACACCAAAGCATCAATG
196 AGAAACTTTGATACTATCAAAAACAGTGGAAAGAAAAGCTTGCTTGAGACACCAAAGCATCAATG
* * * * * *
738243 TCATGTATCCTAATAAAGAGAATATGTTCTTAGTTCCCAAATCTTTAAAAGAATGGAGACTGTTA
261 TCATGTATCCTAAGAAAGAGAATATATTCTTAGATCCCAAATCATGAAAAGAACGGAGACTGTTA
* * * * *
738308 TGAGAATTAATGCTTGTATTTAAGGGATGAATTTGTTTATTTTAAGGAAAATAGGGCAAGGAAAA
326 CGAGAATCAATGCTTGTATTTAAGGGATGAATTTGTTTATTTTAAGAAAAATAGAGCAAAGAAAA
* * * *
738373 GATTTCCATGCATAAGAAAATCATATCATTTATCCTAATAAGGAGAATGTATTTATAGTGCCTAA
391 GATTTCCATGCAAAAGAAAATCATATCATTTATCCTAAGAAGGAAAATATATTTATAGTGCCTAA
* * **
738438 TCACAAAGTCAATGAAGATCATTACTAGAATCCATGTGTGTCACGATTGAGGTATGAACTTAGAC
456 TCACAAAGTCAATGAAGATCATTACTAGAATCCATGTGTATCACGATTGAGGCACAAACTTAGAC
* **
738503 TTTACAAAAATTAAGGGAAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCCTT
521 TTTACAAAAATTAAGGGAAAAAAAGCCTTTCTCGCAAAACCAAAGAATCAATATCGCATATCCTT
* * * *
738568 ATGAGAAAACTGTGTTTATAGTGCCAAATTGCGAAAAGAATGGGGATTAGTATAACTATTCTTAT
586 ATGAGAAAACTATGCTTATAGTGCCAAATTCCGAAAAGAATGGGGATTAGTATAACTATTCATAT
* **
738633 TTGCCTTATTAAAGAGAGAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGGTTTTCTTGCTA
651 TTGCCTTATTAAAGAGAAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTTCTTGCTA
* * * * * *
738698 CAGCAAAGCGTCAATGTCATGTATCCTTGGGACAAGAATGTGTTTGTGGTTCTCAATCATGAAAA
716 CACCAAAACGTCAATGTCATGTATCCTAGGGACAAGAATGTGTTTGTAGTTCCCAATCATAAAAA
* * * * *
738763 GAATAAAGACTGTGATGAGAATCATCAATATCATTTATGCTAATGAGGAGAATGTATTTATAGTG
781 GAATAAAGACTGTGACGAGAATCACCAATATCATTTATCCTAATGAAGAAAATGTATTTATAGTG
*
738828 CCTAATCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCTCAAACT
846 CCTAATCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACAAACT
**
738893 TAGGGTTTACGAAAAATAAGGAAAATGTGTTTACAGTTCCTAATCACAAAACGGATG
911 TAGACTTTAC-AAAAATAAGGAAAATGTGTTTACAGTTCCTAATCACAAAACGGATG
* * * * ** **
738950 AAGATCATTACTAGAATCTAAGTTTGTCTCGTTTGAGGCACAAACTTAGGGTTTACAAAAATTGG
1 AAGATCATTACTAGAATCCAAGCTCGTCACAATTGAGGCACAAACTTAGACTTTACAAAAATTGG
* ** *
739015 TGGGAGGAAAGCCTTTCTTAAGAAACCAAAGCATCAATATCGTATATCCTTATAAGAAGATTATG
66 TGGGAGGAAAGCCTTTCTTAAGAAACCAAAGCATCAATATCGTATATCCCTATAAGAAGACGATA
* *
739080 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTCTTCATGGTTGTCTTATTTAAG
131 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAATAACTATTCATGGTTGTCTTATTTAAG
* ** * * *
739145 AGACAAGCTTTGATACTGTCGAAAAGTA-TGGAAAGATAATA-TTTTCTTGCGACACCAAAGCAT
196 AGA-AA-CTTTGATACTATC-AAAAACAGTGGAAAGA-AA-AGCTTGCTTGAGACACCAAAGCAT
* * *
739208 CAATGTCATGTATCCT-AGAAAGAGAATGTATTCTT-GCCAT-CCTAA-CATGAAAAGAGCGGAG
256 CAATGTCATGTATCCTAAGAAAGAGAATATATTCTTAG--ATCCCAAATCATGAAAAGAACGGAG
* *
739269 ATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAA-TT-TTTATTTTAAGAAAAATAGA
319 ACTGTTACGAGAATCAATGCTTG---TATTTAAGGGATGAATTTGTTTATTTTAAGAAAAATAGA
*** * * *
739332 GCAAAGAAAAGATTTTTGTGGAAAAGAAAATCATTAATATCATTTATCTTAAGGAGGAAAATATA
381 GCAAAGAAAAGATTTCCATGCAAAAGAAAATC----ATATCATTTATCCTAAGAAGGAAAATATA
* * *
739397 TTTATAGTGCCTAATCACAATGTCAGTGAAGATCATTACTAGAGTCCATGCT-TATCACGATTGA
442 TTTATAGTGCCTAATCACAAAGTCAATGAAGATCATTACTAGAATCCATG-TGTATCACGATTGA
* * * * *
739461 GGCACAAACTTAGAGTTTACAAAAA-TAGGGGAAAGAAAGCCTTTCTCGGAAAACCAAAGCATCA
506 GGCACAAACTTAGACTTTACAAAAATTAAGGGAAAAAAAGCCTTTCTCGCAAAACCAAAGAATCA
* * *
739525 ATA-CGCATATCCTTATGAGAAGACTATGCTTATGGTGCCTAA-TCCTGAAAA-AATGGGGATTA
571 ATATCGCATATCCTTATGAGAAAACTATGCTTATAGTGCCAAATTCC-GAAAAGAATGGGGATTA
* * *
739587 GTATAACTATTCATA-TTGTTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAATGGTTGAAA
635 GTATAACTATTCATATTTG-CCTTATTAAAGAGA-AAACTTTGATTCTATCAAAAATGGTTGAAA
* * *
739651 -AAACTACTTTTCTTG-TGGCACCAAAACTTCAATGTCATGTATCCTAGTGA-AAGAATGTGTTT
698 GAAA-TACTTTTCTTGCT-ACACCAAAACGTCAATGTCATGTATCCTAGGGACAAGAATGTGTTT
* * ** *
739713 TTAGTTCCCAATCTTAAAAAGAATGGAGACTGTGACGAGAATCACCAATATCATTTATCCTAATT
761 GTAGTTCCCAATCATAAAAAGAATAAAGACTGTGACGAGAATCACCAATATCATTTATCCTAATG
* * *
739778 AAGAAAATGTGTTTATAGTGCCTAATCACATAGTGAATGAAGATCATTACTAGAATCCATGTTTG
826 AAGAAAATGTATTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTG
*
739843 TCATAATTGAGGCACAAACTTAGACTTTACAAAAAT
891 TCACAATTGAGGCACAAACTTAGACTTTACAAAAAT
739879 TAGGGGGAAA
Statistics
Matches: 792, Mismatches: 117, Indels: 38
0.84 0.12 0.04
Matches are distributed among these distances:
967 168 0.21
968 34 0.04
969 92 0.12
970 240 0.30
971 117 0.15
972 37 0.05
973 103 0.13
974 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (966 bp):
AAGATCATTACTAGAATCCAAGCTCGTCACAATTGAGGCACAAACTTAGACTTTACAAAAATTGG
TGGGAGGAAAGCCTTTCTTAAGAAACCAAAGCATCAATATCGTATATCCCTATAAGAAGACGATA
TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAATAACTATTCATGGTTGTCTTATTTAAG
AGAAACTTTGATACTATCAAAAACAGTGGAAAGAAAAGCTTGCTTGAGACACCAAAGCATCAATG
TCATGTATCCTAAGAAAGAGAATATATTCTTAGATCCCAAATCATGAAAAGAACGGAGACTGTTA
CGAGAATCAATGCTTGTATTTAAGGGATGAATTTGTTTATTTTAAGAAAAATAGAGCAAAGAAAA
GATTTCCATGCAAAAGAAAATCATATCATTTATCCTAAGAAGGAAAATATATTTATAGTGCCTAA
TCACAAAGTCAATGAAGATCATTACTAGAATCCATGTGTATCACGATTGAGGCACAAACTTAGAC
TTTACAAAAATTAAGGGAAAAAAAGCCTTTCTCGCAAAACCAAAGAATCAATATCGCATATCCTT
ATGAGAAAACTATGCTTATAGTGCCAAATTCCGAAAAGAATGGGGATTAGTATAACTATTCATAT
TTGCCTTATTAAAGAGAAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTTCTTGCTA
CACCAAAACGTCAATGTCATGTATCCTAGGGACAAGAATGTGTTTGTAGTTCCCAATCATAAAAA
GAATAAAGACTGTGACGAGAATCACCAATATCATTTATCCTAATGAAGAAAATGTATTTATAGTG
CCTAATCACAAAGTGAATGAAGATCATTACTAAAATCCATGTTTGTCACAATTGAGGCACAAACT
TAGACTTTACAAAAATAAGGAAAATGTGTTTACAGTTCCTAATCACAAAACGGATG
Found at i:740114 original size:392 final size:392
Alignment explanation
Indices: 739367--740148 Score: 1065
Period size: 392 Copynumber: 2.0 Consensus size: 392
739357 GAAAATCATT
* * *
739367 AATATCATTTATCTTAAGGAGGAAAATATATTTATAGTGCCTAATCACAATGTCAGTGAAGATCA
1 AATATCATTTATCCTAAGGAAGAAAATATATTTATAGTGCCTAATCACAATGTCAATGAAGATCA
* * *
739432 TTACTAGAGTCCATGCTTATCACGATTGAGGCACAAACTTAGAGTTTACAAAAATAGGGGAAAGA
66 TTACTAGAATCCATGCTTATCACAATTGAGGCACAAACTTAGACTTTACAAAAATAGGGGAAAGA
*
739497 AAGCCTTTCTCGGAAAACCAAAGCATCAATACGCATATCCTTATGAGAAGACTATGCTTATGGTG
131 AAGCCTTTCTCGCAAAACCAAAGCATCAATACGCATATCCTTATGAGAAGACTATGCTTATGGTG
* * *
739562 CCTAATCCTGAAAAAATGGGGATTAGTATAACTATTCATATTGTTCTTATTTAAGAGACAAACTT
196 CCAAATACTGAAAAAATGGGGATTAGTAAAACTATTCATATTGTTCTTATTTAAGAGACAAACTT
* * * *** *
739627 TGATTCTTTCAAAAATGGTTGAAAAAACTACTTTTCTTGTGGCACCAAAACTTCAATGTCATGTA
261 TGATTCATTCAAAAATGATTGAAAAAAATACTTTTCTTGCAACACCAAAACATCAATGTCATGTA
* * * *
739692 TCCTAGTGAAAGAATGTGTTTTTAGTTCCCAATCTTA-AAAAGAATGGAGACTGTGACGAGAATC
326 TCCTAATGAAAGAAAGCGTTTTTAGTTCCCAATC-TAGAAAAGAATGGAGACTATGACGAGAATC
739756 ACC
390 ACC
** * * *
739759 AATATCATTTATCCTAATTAAGAAAATGTGTTTATAGTGCCTAATCAC-ATAGTGAATGAAGATC
1 AATATCATTTATCCTAAGGAAGAAAATATATTTATAGTGCCTAATCACAAT-GTCAATGAAGATC
* * * *
739823 ATTACTAGAATCCATGTTTGTCATAATTGAGGCACAAACTTAGACTTTACAAAAATTAGGGGGAA
65 ATTACTAGAATCCATGCTTATCACAATTGAGGCACAAACTTAGACTTTACAAAAA-TAGGGGAAA
* ** *
739888 -AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
129 GAAAGCCTTTCTCGCAAAACCAAAGCATCAATA-CGCATATCCTTATGAGAAGACTATGCTTATG
* * * *
739952 GTGCCAAATAGTGAAAAGAAT-GGGATTAGTAAAACTATTCTTGTT-TGTCTTATTTAATAGACA
193 GTGCCAAATACTGAAAA-AATGGGGATTAGTAAAACTATTCATATTGT-TCTTATTTAAGAGACA
* * *
740015 AACTTTGATTCATT-AAAAATGATT-AAAAAAATGCTTTTCTTGCAACACCAAAGCATCCATGTC
256 AACTTTGATTCATTCAAAAATGATTGAAAAAAATACTTTTCTTGCAACACCAAAACATCAATGTC
* *
740078 ATGTATCCTAATGAAAGGAAAGCGTTTTTGGTTCCCAATCTAGAAAAGAATGGAGACTATTACGA
321 ATGTATCCTAATGAAA-GAAAGCGTTTTTAGTTCCCAATCTAGAAAAGAATGGAGACTATGACGA
740143 GAATCA
385 GAATCA
740149 ATCCTTGCAT
Statistics
Matches: 340, Mismatches: 43, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
391 50 0.15
392 188 0.55
393 99 0.29
394 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (392 bp):
AATATCATTTATCCTAAGGAAGAAAATATATTTATAGTGCCTAATCACAATGTCAATGAAGATCA
TTACTAGAATCCATGCTTATCACAATTGAGGCACAAACTTAGACTTTACAAAAATAGGGGAAAGA
AAGCCTTTCTCGCAAAACCAAAGCATCAATACGCATATCCTTATGAGAAGACTATGCTTATGGTG
CCAAATACTGAAAAAATGGGGATTAGTAAAACTATTCATATTGTTCTTATTTAAGAGACAAACTT
TGATTCATTCAAAAATGATTGAAAAAAATACTTTTCTTGCAACACCAAAACATCAATGTCATGTA
TCCTAATGAAAGAAAGCGTTTTTAGTTCCCAATCTAGAAAAGAATGGAGACTATGACGAGAATCA
CC
Found at i:741095 original size:474 final size:476
Alignment explanation
Indices: 740226--745226 Score: 3426
Period size: 474 Copynumber: 10.5 Consensus size: 476
740216 ATAGTGCCTG
* * * *
740226 ATCCCGAAAAGAATGGGGATTTG-ATTAACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTG
1 ATCCTGAAAAGAATGGAGATTAGTA-TAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * * * *
740290 TTTCAATCAAAAACGATGGAAGGGAAAGCTTTTGTTGTGACATCGAAGCATCAATGTCATGTATC
65 ATTCTATCAAAAAGGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
* ** *
740355 CTAATAAAGGGAATGTGTTCTTAGCTCCCAATCTTGAATGGAATGGAGACTGTTATGAGAATCGA
130 CTAATAAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * * *
740420 TGGTTGTCAAATTTAAAGGATGAATTTTTTATTTTAAGGAAAATGGGGTAAGGAAAAGATTTTCA
195 TGCTTGTCATATTTAAGGGATGAA-TTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCA
* *
740485 TGCAAAAGAAAATCATCAGTATCATTTATAC-TAATGAGGAGAATGTGTTTGTAGTGCCTAATCA
259 TGCAAAAGAAAATCATCAATATCATTTAT-CTTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
740549 CAACGTGAATGAAGATCATTACTAGAATCCATGTTTGTCAGAGTTGAGGCACGAACTTAGACTTT
323 CAAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACTTT
* * * * * *
740614 TCAAAAATTAGTGGGAGGAAAGTCTTTCTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTATC
388 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATC
740679 AAAAGACAATGTTTATGGTGCAAA
453 AAAAGACAATGTTTATGGTGCAAA
* * * * * **
740703 ATCTTGAAAAGAATGGAGATTAGTATGACTATTCATATTTGTCTAATTGAAGAGACAAACTTCAA
1 ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
740768 TTCTATCAAAAAGGATGGAAAGAAAAGCTTTCCTTGTGACA-CAAACCATCAATGTCA-GATATC
66 TTCTATCAAAAAGGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG-TATC
* * *
740831 CTAATAAAGAGAATGTGTTCTTAGCTCCTAATCTTGAAAAGAATGGATACGGTTACGAGAATCGA
130 CTAATAAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * *
740896 TGCTTGTCATATCTAAGGGATGAA-TTTTATTTTAAGGAAAATGGGGCAAAGTAAAGATTTCCAT
195 TGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCAT
*
740960 GCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCA
260 GCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * *** * ** * ** *
741025 AAATGAATGAAGATCATTACTACTTTCCATGTTTATCTTATTTAAGGCGTAAACTTAGAATTTAC
325 AAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACTTTAC
* * * * * ** * **
741090 AAAAATTAGTGAGAAGAAAGCCTTTTTTGTGAACCCAAAGCAAGAATATCGTATATCC-TAGAAA
390 AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATCAA
**
741154 GAAGACAATGTTTATGGTGCCTA
455 -AAGACAATGTTTATGGTGCAAA
* * * *
741177 ATCCTAAAAAGAATGGGGATTAGTATAACTATTCATGCTTGTCTTATTTAAGAGACACACTTTGA
1 ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * * *
741242 TTCTATCGAAAATGATCGAAA-AAAAGCTTTTTTTGCGACTCTAAAGCATTAATGTCATGTATCC
66 TTCTATCAAAAAGGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCC
** * * * * * * *
741306 TAATTTAGAGAATGTGTTCTTGGTTCCTATTCTTAAAAAAAGAATGGAGACTGTTGCGCGAATCG
131 TAATAAAGAGAATGTGTTCTTAGCTCCCAATCTT--GAAAAGAATGGAGACTGTTACGAGAATCG
* * **
741371 ATGCTTGTCATATTTAAGGGATGAATTTTTATTTCAAGGAAAATGGGGCAAAGAAAATATTGACA
194 ATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCA
* * ** * **
741436 TGTAAAA-AAAATCAACAATATCATTTATCCGAATGAGGAGAATGTGTTTATTGTGCC-AATCGT
259 TGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
741499 AAAGTGAATAAAGAACATTACTAG-ATCCATGTTTGTCACAATTGAGGCACAAACTTAGGCTTTA
324 AAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACTTTA
* *
741563 GAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT-CAT-TCA
389 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATCA
* * **
741626 GAGAAGAC-TTAGTTTATAGTGCCTA
454 -A-AAGACAAT-GTTTATGGTGCAAA
* * * * *
741651 ATCCTAAAAAGAATGG-GCAATAGTATAACTTTTCATGTTTGCCTTATTTAAGAGACAAACTTTA
1 ATCCTGAAAAGAATGGAG-ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
741715 ATTCTATCAAAAACGG-T-TAAAGGAAATGTTTTTCTTGCT-ACACCAAAGCATCAATGTCATGT
65 ATTCTATCAAAAA-GGATGGAAA-GAAAAGCTTTTCTTG-TGACACCAAAGCATCAATGTCATGT
* * * * * * * ** * * * *
741777 ATCTTAGTGAAATA-AAGGTGTTTTTGGTTCCCAATCACGATAAGAATGGAGACTATGATGAGAA
127 ATCCTAAT-AAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAA
* * * * * * * *
741841 TCAATGCTTG-CCTTTTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAATGA-TT
191 TCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTT
* * *
741904 TCTATGCAAAA-AAAATCAAT-AATATCATTTATCCTAATAAGGAGGATGTGTTTATAGTGCCTA
256 TC-ATGCAAAAGAAAATC-ATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTA
** * * * * * *
741967 ATCACAAAGTGAATGGAGATCAGTACTAAAATCCATGTTTGTAACAATTGAGGCATAAACATAGA
319 ATCACAAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGA
* *** * *
742032 CTTTAAAAAAATTCGG-CAAAAAAAAGCCTTTCTTG-GAAAACCAAAGCATCAATATCGTATATC
384 CTTTACAAAAATT-GGTGGGAAGAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCGTGTATC
* * * *
742095 CTTATGAGAAGACTATGTTTATGGTGCCAA
447 CTTATCAAAAGACAATGTTTATGGTGCAAA
* * * * * * *
742125 ACCCTGTAAAGAATGGCGATTAGTATGACTATTCTTGTTTATCTTATTTAAAAGACAAACTTTGA
1 ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
742190 TTCTATCAAAAAATGG-TCGAAAGAAATGCTTTTCTTGTGACACTAAAGTC-TC-ATGTCATCTA
66 TTCTATC-AAAAA-GGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAG-CATCAATGTCATGTA
* * * * ** * *
742252 TCCTAATGAAAG-GAATGCGTTTTTAGTTCCCAATCTCGAAAAGAATAAAGACTGCTATGAGAAT
128 TCCTAAT-AAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAAT
* * * * * *
742316 CAAAGCTTG-CGTTATTTAAAGGATGAACTTTGA-TTTAATGGAAAATAGGGG-AAAGAAAAGAT
192 CGATGCTTGTC-ATATTTAAGGGATGAATTTTTATTTTAA-GGAAAAT-GGGGCAAAGAAAAGAT
** * *
742378 TTTCATGCAAAAGAAAATTGTCAATATCATTTATCTTAATGAGGAGAATTTGTTTATAATGCCTA
254 TTTCATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTA
* * ** * ** *
742443 ATCAAAAAATGCGTAAAGATCATTACTAGAGTCCATGTTTGTCTGATTTGAGGCACAAACTTGGA
319 ATCACAAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGA
* * * *
742508 CTTTACAAAAAATGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGTATCATTATCGTGTATCCT
384 CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * * ** **
742573 TCTGAGAA-TCAATCCTTGGATTAT-TTAA
449 TATCAAAAGACAAT-GTT-TATGGTGCAAA
* ** ** * * ** * ** * *
742601 GTGATGAACTTTGATTTTATGGAAAATAGGGTGAACAAAAGACTATATTTACAGTGCCTAATCCT
1 ATCCTGAA--AAGA----ATGGAGATTAGTAT-AAC--TATTC-ATGTTT---GT--CTTAT--T
* * * * * *** * ** *
742666 GAAAAGA-ATGGGGA-TTCGATTGACTATTAATGTTTGTCTTATTTAAGAGACAAA--TTTTAAT
49 TAAGAGACA----AACTTTGATT--CTATCAA--AAAG---GATGGAA-AGA-AAAGCTTTT-CT
* ** * ** * ** * * * * *
742727 TCT-ATCAAAAATGATGGAAAGGAAAGCTTTTGT-TGCGACACCAAAGCATCAA--TG-TCAT-G
100 TGTGA-CACCAA--A--G-CATCAATG-TCATGTATCCTA-A-TAAAG-A-GAATGTGTTCTTAG
* * * * *** * ** *
742786 -T----ATCTTAATAAAGGGAAT-GTG-TTCTTAGCTCCCAATCCTGAAAAGAATGT-AGACTGT
154 CTCCCAATCTTGA-AAA--GAATGGAGACTGTTA-C-GAGAAT-C-G--ATGCTTGTCATA-T-T
* * ** * * *****
742843 TATAAGAATCG-ATGCTTGCCAAATTTAAGGGATGAATTTTTTATTTTAAAGAAAATAAGGTAAG
208 TA-AGGGAT-GAAT--TT--TTATTTTAA-GGA--AA----ATGGGGCAAAG--AA-AA-G--A-
***** * * * *
742907 GAAAAGATTTTCATGCAAAAAAAAATCATCAGTATCATTTATCGTAATGAGGAGAATGTGTTTGT
253 -TTTTCA--T----GCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTAT
* * * * * *
742972 AGTGCCTAATCACAAAGTGAGTAAAGATCATTACTAGAATCCATGTTTATCACAGTTAAGCCACG
311 AGTGCCTAATCACAAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACA
* *
743037 AACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCTT-CTGAAACCAAAGCGTCAATATC
376 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC-GAAACCAAAGCATCAATATC
*
743101 GTGTATCCTTATCAGAAGACAATGTTTATGGTGCAAA
440 GTGTATCCTTATCAAAAGACAATGTTTATGGTGCAAA
* * * * * * * * * *
743138 ATCTTGAAAAGAATGGAGAATAGTTTGACTATTAATATTTATCTTATTGAAGTGACAAACTCTGA
1 ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * *
743203 TTCTATCAAAAACGACGGAAAGAAAAG-TTTTCCTTGCGACACCGAAGCATCAGTGTCACGCATC
66 TTCTATCAAAAAGGATGGAAAGAAAAGCTTTT-CTTGTGACACCAAAGCATCAATGTCATGTATC
* * * *
743267 CTAATAAAGAGAATGTGTTCTTGGCTCCTAATCTTGAAATGAATGGATG-CTATTACGAGAATCG
130 CTAATAAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGA-GACTGTTACGAGAATCG
* * * * * * *
743331 AAGCTTGTCATATCTGAGGGATAAATTTTTATTTTCAGGAAAAT-GGGCAAAGTAAATATTTTCA
194 ATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCA
* ** * * * *
743395 TGCAAAAGAAAATCACCAATATCATTTATCTTGTTGAGGAGAACGTGTTTACAATGCCTAATCCC
259 TGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
** * * * **
743460 AAAACGAATGAAGATCATTACTACAATCCAAGTTTGTCTTATTTGAGGCACAAACTTAGACTTTA
324 AAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACTTTA
* ** * * *
743525 TAAAAATTGGTCAGAAGAAAGCCTTTCTTGTG-AACCAAAGCATCAATATCGTATATCCTTGT-A
389 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATCA
* **
743588 AGAAGACAAAGTTTATGGTGCTTA
454 A-AAGACAATGTTTATGGTGCAAA
*
743612 ATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
1 ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * *
743677 TTCTGTTAAAAATGAT--AAAAAAAAGCTTTTCTTGCGACTCTAAAGCATCAATGTCATGTATCC
66 TTCTATCAAAAAGGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
743740 TAATAGAGAGAATGTATTCTTGGCTCCCAATCTTGGAAAA-AACGGAGA-TGTTACGACAATCGG
131 TAATAAAGAGAATGTGTTCTTAGCTCCCAATCTT-GAAAAGAATGGAGACTGTTACGAGAATCGA
* * * * *
743803 TGCTTGTCATATTTAGGGGATGAATTTTTATTTCAAGGAAAATAGGGCAAAGAAAATATTTCCAT
195 TGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCAT
* ** * *
743868 GCAAAAGAAAATCAACAATATCATTTATCCGCAA-AAGGAGAATGTGTTTATCGTGCCTAATCAC
260 GCAAAAGAAAATCATCAATATCATTTAT-CTTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * * *
743932 AAAGTGAATAAAAAACATTACTAGAATCCATATTTGTCACAATAGAGGCACGAACTTAGGCTTTA
324 AAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACTTTA
* * * * *
743997 CAAAAATCGGTGGGAAGAAAGCCTTTCTTGCGAAGCCAAAGCATCATTATCGTGTATCCTTCTGA
389 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATCA
*
744062 GAAGACTAA-G--T-T--TGC---
454 AAAGAC-AATGTTTATGGTGCAAA
* * * *
744077 AT--T----AG--T----A-T-G----ACTATTCATGTTTGCCTTATTTAATAGATAAGCTTTGA
1 ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** *
744124 TTCTATCAAAAATGG-TTG-AAGCAAATCCTTTTCTTATGACACCAAAGCATCAATGTCATGTAT
66 TTCTATCAAAAA-GGATGGAAAG-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
* * * * * * * * **
744187 CCTAGTGAAAG-GAATGTGTTTTTGGTTCCCAATCATGACAAGAATGGA-ATCTATGATAAGAAT
129 CCTAAT-AAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGA-CTGTTACGAGAAT
* * * * * * * * * *
744250 CAATGTTTGCCCTATTTAAGAGATGAAAACTTTGATTTTAAGGAAAATGGGGTAAACAAATGATT
192 CGATGCTTGTCATATTTAAGGGATG--AATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATT
* * * * *
744315 TCCATGC-AAA-AAAATCAAT-AATATCGTTTACCCTAATGAGGAGCATGTGTTTATAGTGCCTA
255 TTCATGCAAAAGAAAATC-ATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
744377 ATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGCCATAATTGAGGCACAAACGTAGA
319 ATCACAAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGA
* * *
744442 CTTTAAAAAAATTGGAT-GAAAGAAA-----------G--A-CAAAGCATCAATATCGTATATCC
384 CTTTACAAAAATTGG-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * * *
744492 TTATGAGAGGGCTATGTTTATGGTGCCAA
448 TTATCAAAAGACAATGTTTATGGTGCAAA
* * * * * *
744521 ATCCTGCAAAGAATGGCA-ATTAGAATGACTATTCTTGTTTATCTTATTTGAGAGACAAACTTTG
1 ATCCTGAAAAGAATGG-AGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * * **
744585 ATTCTGTCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGACAACAAAGCGTCAATGTTTTGTAT
65 ATTCTATCAAAAA-GGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
* * * * *
744649 -CTAAATGAAAG-GAATGTGTTTTTAGCTCCCAATCTCGAAAAGAATAGAGACTGCTATGAGAAT
129 CCT-AAT-AAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAAT
* * * * * * * * *
744712 CAAAGCTTG-CGTTATTTAAAGGATGAACTTTGATTTTATGAAAAATTGGGCAAAGAAAAGATTT
192 CGATGCTTGTC-ATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTT
*
744776 TCATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATTTGTTTATAGTGCCTAAT
256 TCATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * **
744841 CACAAAATGCATAAAGATCATTACTAGAGTCCATGTTTGTCTGATTTGAGGCACAAACTTAGACT
321 CACAAAGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACT
* * ** * * *
744906 TTACAAAAATTGGT-GGAAAAAATGCCTTTCTAGCGAAACCAAAGTGTCGATATCATATATCCTT
386 TTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* **
744970 AT-AAGAAGACTATGTTTATGGTGCCTA
450 ATCAA-AAGACAATGTTTATGGTGCAAA
* * * * * **
744997 ATCCTGAAAAAGAAGGGGGATTTGTATAACTATTCTTGTTTGTCTTATTTAAAAGATGAACTTTG
1 ATCCTG-AAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * ** * *
745062 ATTCTAT-AAAAATGATTGAAA-AAATGGCTTTTCCTGCGACAGTAAAGCATCAATGTCATGCAC
65 ATTCTATCAAAAAGGATGGAAAGAAA-AGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
* * * * * * *
745125 CCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCGTGAAAA-AAGTGGAGACTATTATGAGAAA
129 CCTAAT-AAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAA-TGGAGACTGTTACGAGAAT
* * *
745188 CGATGCTTGTCATTTTTAAGGGAGGAGTTTTTATTTTAA
192 CGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAA
745227 ATTTGGGGGG
Statistics
Matches: 3521, Mismatches: 774, Indels: 459
0.74 0.16 0.10
Matches are distributed among these distances:
435 1 0.00
436 31 0.01
438 1 0.00
439 2 0.00
441 3 0.00
444 2 0.00
446 1 0.00
447 45 0.01
448 8 0.00
449 69 0.02
450 143 0.04
451 6 0.00
452 39 0.01
453 1 0.00
456 1 0.00
457 2 0.00
458 1 0.00
459 2 0.00
460 38 0.01
461 15 0.00
462 260 0.07
463 5 0.00
465 2 0.00
468 3 0.00
470 1 0.00
471 52 0.01
472 311 0.09
473 123 0.03
474 847 0.24
475 307 0.09
476 525 0.15
477 185 0.05
478 3 0.00
479 1 0.00
481 1 0.00
482 9 0.00
483 3 0.00
485 2 0.00
486 6 0.00
487 1 0.00
489 5 0.00
490 1 0.00
491 4 0.00
492 1 0.00
493 7 0.00
494 2 0.00
495 6 0.00
496 6 0.00
497 10 0.00
499 2 0.00
501 16 0.00
502 12 0.00
503 20 0.01
504 15 0.00
505 9 0.00
506 11 0.00
507 9 0.00
508 9 0.00
509 21 0.01
510 25 0.01
511 7 0.00
512 8 0.00
513 1 0.00
514 2 0.00
516 7 0.00
517 9 0.00
518 5 0.00
519 2 0.00
520 6 0.00
521 1 0.00
522 4 0.00
523 5 0.00
524 1 0.00
525 2 0.00
526 2 0.00
527 7 0.00
528 1 0.00
529 1 0.00
530 2 0.00
531 12 0.00
533 1 0.00
535 2 0.00
536 4 0.00
537 176 0.05
538 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
ATCCTGAAAAGAATGGAGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCTATCAAAAAGGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCC
TAATAAAGAGAATGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
GCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCATG
CAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
AGTGAATAAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACAAACTTAGACTTTACA
AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATCAAA
AGACAATGTTTATGGTGCAAA
Found at i:749599 original size:270 final size:271
Alignment explanation
Indices: 749106--749629 Score: 612
Period size: 270 Copynumber: 1.9 Consensus size: 271
749096 GAAGACTTTG
*
749106 TTTATGGTGCCAGATCATGAAAAGAATGAGGATTAGTATAACTATTCTTGTTTGTCTTATTTAGA
1 TTTATGGTGCCAGATCATGAAAAGAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAGA
* * *
749171 AAACAAACTCTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCTTGCGACACCAATGCATCA
66 AAACAAACTCTCATTCTATCAAAAACAGTGGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
* * * * * *
749236 ATGTCTTGTATCATAATGAAAGGAAAGTGTTTTTGGTTCCCAATGTAGAAAAGAATGGAAACTAT
131 ATGTCGTGTATCATAATGAAAGGAAAGTGTTCTTAGCTCCCAATCTAGAAAAAAATGGAAACTAT
* *** * *
749301 TATGAGAATCAATCCTTGCGTTATTTAAGTGATGAA-CTTTGATTTTATGAAAAATAGGGTGAAC
196 TATAAGAATCAATCCTTGCCAAATTTAAGGGATGAATCTTTGATTTTAAGAAAAATAGGGTGAAC
749365 AAAAGATTATA
261 AAAAGATTATA
* * * *
749376 TTTATGGTGCCTA-ATCCTGAAAAGAATGGGGATTCG-ATTGACTATTCATGTTTGTCTTATTTA
1 TTTATGGTGCC-AGATCATGAAAAGAATGAGGATTAGTA-TAACTATTCATGTTTGTCTTATTTA
*** * *
749439 -AGAGGGAAACTTTCATTCTATCAAAAAC-GATGGAAAGGAAA-GCTTTTGTTGCGACACCAAAG
64 GA-AAACAAACTCTCATTCTATCAAAAACAG-TGGAAA-GAAATGCTTTTCTTGCGACACCAAAG
* * * *
749501 CATCAATGTCGTGTATCCTAAT-AAAGGGAATGTGTTCTTAGCTCCCAATCTTGAAAAAAATGTA
126 CATCAATGTCGTGTATCATAATGAAA-GGAAAGTGTTCTTAGCTCCCAATCTAGAAAAAAATGGA
* * ** * * * *
749565 GACTGTTATAAGAATTGATGCTTGCCAAATTTAAGGGATGAATTTTTTATTTTAAGGAAAATAGG
190 AACTATTATAAGAATCAATCCTTGCCAAATTTAAGGGATGAATCTTTGATTTTAAGAAAAATAGG
749630 ATAAGGAAAA
Statistics
Matches: 210, Mismatches: 37, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
269 6 0.03
270 181 0.86
271 23 0.11
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (271 bp):
TTTATGGTGCCAGATCATGAAAAGAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAGA
AAACAAACTCTCATTCTATCAAAAACAGTGGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCA
ATGTCGTGTATCATAATGAAAGGAAAGTGTTCTTAGCTCCCAATCTAGAAAAAAATGGAAACTAT
TATAAGAATCAATCCTTGCCAAATTTAAGGGATGAATCTTTGATTTTAAGAAAAATAGGGTGAAC
AAAAGATTATA
Found at i:750407 original size:476 final size:473
Alignment explanation
Indices: 749376--750547 Score: 1358
Period size: 476 Copynumber: 2.5 Consensus size: 473
749366 AAAGATTATA
* *
749376 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTCG-ATTGACTATTCATGTTTGTCTTATTTAA
1 TTTATGGTGCATAATCCTGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTTGTCTTA-TTAA
** * * * *
749440 GAGGGAAACTTTCATTCTATCAAAAACGATGGAAAGGAAAGCTTTTGTTGCGACACCAAAGCATC
64 GAGACAAACTTTGATTCTATCAAAAACGATCGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
749505 AATGTCGTGTATCCTAATAAAGGGAATGTGTTCTTAGCTCCCAATCTTGAAAAAAATGTAGACTG
129 AATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCTAATCTTGAAAAAAATGGAGACTG
* * * * * *
749570 TTATAAGAATTGATGCTTGCCAAATTTAAGGGATGAATTTTTTATTTTAAGGAAAATAGGATAAG
194 TTATGAGAATCGATGCTTGTCATATCTAAGGGATGAATTTTTTATTTTAAGGAAAATAGGATAAA
* ** *
749635 GAAAAGATTTCCATGCAAAAGAAAATCAGTATCATTTATCGTAATGAGGAGAATGTGTTTGTAGT
259 GAAAAGATTTCCATGCAAAAGAAAATCAATATCATTTATCGTAATGAGGAGAATGTGTTTACAAT
* ** * * *
749700 GCTTAATCACAAAGTGAATGAAGATAATTACTAGAATCCATGTTTAACACAATTGAGCCACGAAC
324 GCCTAATCACAAAACGAATGAAGATAATTACTACAATCCAAGTTTAACACAATTGAGCCACAAAC
* *
749765 TTAGACTTATAAAAAATTGGTGGGAAGAAAGCCTTTCTTAAGAAACCAAATAGTCAATATCGTGT
389 TTAGACTTATAAAAAATTGGTGAGAAGAAAGCCTTTCTTAAGAAACCAAACAGTCAATATCGTGT
* *
749830 ATCCTTATCAAAGAACAATG
454 ATCCTTATAAAAGAACAAAG
* * * * * *
749850 TTTATGGTGCAAAATCATGAAAAGAATGGAGAATAGTATGACTATTCATATTTATCTTATTGAAG
1 TTTATGGTGCATAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT-AAG
* * *
749915 AGATAGACTCTGATTCTATCAAAAACGAT-GACAAGAAAAG-TTTTCCTTGCGACACCAAAGCAT
65 AGACAAACTTTGATTCTATCAAAAACGATCGA-AAGAAAAGCTTTT-CTTGCGACACCAAAGCAT
* * * *
749978 CAATCTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCTAATCTTGAAAACAATGGATATT
128 CAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCTAATCTTGAAAAAAATGGAGACT
* * *
750043 GTTATGAGAATCGATGCTTGTCATATCTGAGGGATGAA-TTTTTATTTTAAGGAAAATGGGGTAA
193 GTTATGAGAATCGATGCTTGTCATATCTAAGGGATGAATTTTTTATTTTAAGGAAAATAGGATAA
* * * * *
750107 AGTAAAGATTTTCATGCTAAAGAAAATCATCAATATCATTTATCTTATTGAGGAGAATGTGTTTA
258 AGAAAAGATTTCCATGCAAAAG-AAA--ATCAATATCATTTATCGTAATGAGGAGAATGTGTTTA
* * * ** * *
750172 CAATGCCTAATCCCAAAACGAATGAAGATCATTACTACAATCCAAGTTTATCTTATTTGAGGCAC
320 CAATGCCTAATCACAAAACGAATGAAGATAATTACTACAATCCAAGTTTAACACAATTGAGCCAC
* * * * *
750237 AAATTTAGACTT-TACAAAAGTTGGTTAGAAGAAAGCCTTTCTTATGAACCCAAAGCA-TCAATA
385 AAACTTAGACTTATA-AAAAATTGGTGAGAAGAAAGCCTTTCTTAAGAAACCAAA-CAGTCAATA
* * *
750300 TCGTTTATCTTTTTAAGAAG-ACAAAG
448 TCGTGTATCCTTATAA-AAGAACAAAG
* * ** *
750326 TTTATGGTGCTTAATCCTGAAAAGAATGGGGATTAGTATAACTATTTGTGTTTGTCTTACTTAAT
1 TTTATGGTGCATAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAG
* * * * * * *
750391 AGACAAACTTTGATTCTGTTAAAAATGATCGAAAAAAAAGCTTTTCTTGCAACTCTAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAACGATCGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
750456 ATGTCATGAATCCTAA-AAGAGAGAATGTGTTCTTGGCT-CTCAATCTTGGAAAGAATAGAGACT
130 ATGTCATGTATCCTAATAA-AGAGAATGTGTTCTTGGCTCCT-AATCTTGAAAAAAATGGAGACT
* *
750519 GTTACGAGAATCGATG--TGTCATATTTAAG
193 GTTATGAGAATCGATGCTTGTCATATCTAAG
750548 AGGAAGCATA
Statistics
Matches: 585, Mismatches: 98, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
473 50 0.09
474 202 0.35
475 7 0.01
476 314 0.54
477 12 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
TTTATGGTGCATAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAGA
GACAAACTTTGATTCTATCAAAAACGATCGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCTAATCTTGAAAAAAATGGAGACTGTT
ATGAGAATCGATGCTTGTCATATCTAAGGGATGAATTTTTTATTTTAAGGAAAATAGGATAAAGA
AAAGATTTCCATGCAAAAGAAAATCAATATCATTTATCGTAATGAGGAGAATGTGTTTACAATGC
CTAATCACAAAACGAATGAAGATAATTACTACAATCCAAGTTTAACACAATTGAGCCACAAACTT
AGACTTATAAAAAATTGGTGAGAAGAAAGCCTTTCTTAAGAAACCAAACAGTCAATATCGTGTAT
CCTTATAAAAGAACAAAG
Found at i:752109 original size:476 final size:473
Alignment explanation
Indices: 750927--752527 Score: 1794
Period size: 476 Copynumber: 3.4 Consensus size: 473
750917 CTACGTTTGC
* * * * * *
750927 ATTAGTATGACTATTCATGTTTGCCTGATTTAATAGACAAACTTTGATTCTCTCAAAAATGGTTG
1 ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG
* * * * *
750992 AAGCAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAGTGAAAAGAATGTGTT
66 AA-AAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGATTGTGTT
* * * * * *
751057 TTTGGTTCCCAATCATGACAAGAATGGAGTCTGTGATGAGAATCAATGCTTGCCTTATTTAAGAG
130 TTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGCCATATTTAAGGG
* * * * * *
751122 ATGAAAACTTTGATTTTAAGGAAAATGGGGTAAACAAATGATTTCCATGCAAAAAAAAATCAATA
195 ATG--AACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
* * * * * * *
751187 ATATCGTTTACCCTAATGAGGAG-CATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCG
258 ATATCATTTATCCTAATGAGGAGAAAT-TGTTTATAGTGCCTAATCACAAAATGCATAAAGATCA
* * * * * *
751251 TTACTAGAATCCATGTTTGTCACAATTGAGGCACAAACGTAGACTTTAAAAAAATTGGGGGAAAG
322 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAA
* * * *
751316 AAAGCCTTTCTTAA--AAACCCAAAGCATCAATATCGTACATCCTTATGAGAGGGCTATGTTTAT
387 AAAGCCTTTC-TAATGAAA-CCAAAGCATCAATATCGTATATCCTTATAAGAAGACTATGTTTAT
**
751379 GGTGCAAAATCCTACAAA-AT-GGTG
450 GGTGCCTAATCCTA-AAAGATAGG-G
* * * * * * * *
751403 ATTAGAATGACTATTCTTGTTTATTTTATTTGAGAGACAAATTTTGATTCTATCAAAAACAGTTG
1 ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG
* * * *
751468 AAAAAAATGCTTTTCTTACGACACCAAAGCATCAATGTCTTATATCCAAATGAAAGGATTGTGTT
66 -AAAAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGATTGTGTT
* * * * * *
751533 TTTAGTTCCCAATC-TCGAAAAAAATAGAGACTGCTATGAGAATCAAAGCTT-ACATTATTTAAA
130 TTTGGTTCCCAATCAT-GAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGCCA-TATTTAAG
* * * *
751596 GGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGAAAATCGTTA
193 GGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATTA
** *
751661 ATATCATTTATGTTAATGGGGAGAAATTGTTTATAGTGCCTAATCACAAAATGCATAAAGATCAT
258 ATATCATTTATCCTAATGAGGAGAAATTGTTTATAGTGCCTAATCACAAAATGCATAAAGATCAT
* *
751726 TACTAGAGTCCATGTTTGTCTGATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAA
323 TACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAA
* * * * *
751791 AAGTCTTTCTAATGAAACGAAAGCATCGATATTGTATATCCTTATAAGAAGACTACGTTTATGGT
388 AAGCCTTTCTAATGAAACCAAAGCATCAATATCGTATATCCTTATAAGAAGACTATGTTTATGGT
751856 GCCTAATCCTGAAAAGTATAGGG
453 GCCTAATCCT-AAAAG-ATAGGG
* * *
751879 ATTAGTATAACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTT
1 ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG
* ***** *
751944 AAAAAATGACTTTTCCTGCGGTGGTAAAGCATCAATGTCATGTATCCTAATCAAAGGATTGTGTT
66 AAAAAATG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGATTGTGTT
* * *
752009 TTTGGTTCCCAATCATGAAAATAGTGGAGACTGTTATGAGAAAT-GATGCTTGCCATATTTAAGG
130 TTTGGTTCCCAATCATGAAAAAAATGGAGACTGTTATGAG-AATCAATGCTTGCCATATTTAAGG
* * *
752073 GATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAA
194 GATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAA
* * * * * * *
752138 TATCATTTATCCTAATCATGAGAATTTTTTTATAGTTCCTATTCACAAAACGCATAAAGATCATT
259 TATCATTTATCCTAATGAGGAGAAATTGTTTATAGTGCCTAATCACAAAATGCATAAAGATCATT
* * * * * *
752203 ACTAGAATTCATGTTTGTCTTATTTTAGGCACAAACTTAGAGTTTAC-AAAATTGGTGGGAAGAC
324 ACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT-GGAAAAA
* * *
752267 AA-CCGTTCT--TGCAAAACCAAAGTATCAATATCGCATATCCTTA-AGAGAAGACTATGTTTAT
388 AAGCCTTTCTAATG--AAACCAAAGCATCAATATCGTATATCCTTATA-AGAAGACTATGTTTAT
752328 GGTGCCTAATCCTAAAAAGA-AGAAGG
450 GGTGCCTAATCCT-AAAAGATAG--GG
* * *
752354 ATTAGTATAACTATTCATGTTTGTTTTATTTAAGAGACAAACTTCGATTCTATCAAAAATGGTTG
1 ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG
* * * * * * *
752419 AAAAATTGCTTTTCTTACGACACCAAAACATCAATGTCATGTATCCTAGTGGAAGAAATGTG-TT
66 AAAAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGATTGTGTTT
* * * *
752483 TTGAGTTCCCATTCAT-AAAAAGAATGGAGACGGTGACGAGAATCA
131 TTG-GTTCCCAATCATGAAAAA-AATGGAGACTGTTATGAGAATCA
752528 TCAATATAAT
Statistics
Matches: 941, Mismatches: 161, Indels: 48
0.82 0.14 0.04
Matches are distributed among these distances:
473 19 0.02
474 286 0.30
475 156 0.17
476 470 0.50
477 10 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG
AAAAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGATTGTGTTT
TTGGTTCCCAATCATGAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGCCATATTTAAGGGA
TGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATA
TCATTTATCCTAATGAGGAGAAATTGTTTATAGTGCCTAATCACAAAATGCATAAAGATCATTAC
TAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAAG
CCTTTCTAATGAAACCAAAGCATCAATATCGTATATCCTTATAAGAAGACTATGTTTATGGTGCC
TAATCCTAAAAGATAGGG
Found at i:753210 original size:270 final size:271
Alignment explanation
Indices: 752717--753242 Score: 645
Period size: 270 Copynumber: 1.9 Consensus size: 271
752707 GAAAACTTTG
* **
752717 TTTATGGTGCCAAATCATGAAAAGAATGAGGATTAGTATAACTATTTTTGTTTGTCTTATTTAGA
1 TTTATGGTGCCAAACCATGAAAAGAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAGA
* * ** * *
752782 AAACAAACTATGATTCTATCAAAAACAGCTGAAAGAAATGCTTTTCTTGTGACACCAATGCATCA
66 AAACAAACTATCATTCTATCAAAAACAGATGAAAGAAATGCTTTTCTTGCAACACCAAAGCAACA
* * * *
752847 ATGTCATGTATCCTAATGAAAGGAATCTGTTTTTGGTTCCCAATCTAGAAAAGAATGGAGACTGT
131 ATGTCATGTATCCTAATGAAAGGAATCTGTTCTTAGCTCCCAATCTAGAAAAGAATGGAGACTAT
* * **
752912 TACGAGAATCAATCCTTGCATTATTTAAGTGATGAA-CTTTGATTTTGTGGAAAATAGGGTGAAT
196 TACGAGAATCAATCCTTGCATAATTTAAGGGATGAATCTTTGATTTTAAGGAAAATAGGGTGAAT
752976 AAAAGACTATA
261 AAAAGACTATA
* * * *
752987 TTTATGGTGCCTAACCCTGAAAAGAATGGGGATTCG-ATTAACTATTCATGTTTGTCTTATTTA-
1 TTTATGGTGCCAAACCATGAAAAGAATGAGGATTAGTA-TAACTATTCATGTTTGTCTTATTTAG
* * *
753050 AGAGACAAACTTTCATTCTATCAAAAA-TGATGGAAAGGAAA-GC-TTTCGTTGCAACACCAAAG
65 A-AAACAAACTATCATTCTATCAAAAACAGAT-GAAA-GAAATGCTTTTC-TTGCAACACCAAAG
* * *
753112 CAACAATGTCATGTATCCTAAT-AAAGGGAATGTGTTCTTAGCTCCCAATTTTGAAAAGAATGGA
126 CAACAATGTCATGTATCCTAATGAAA-GGAATCTGTTCTTAGCTCCCAATCTAGAAAAGAATGGA
* * * * *
753176 GACTATTATGAGAATCGATGCTTGCCA-AATTTAAGGGATGAATTTTTTATTTTAAGGAAAATAG
190 GACTATTACGAGAATCAATCCTTG-CATAATTTAAGGGATGAATCTTTGATTTTAAGGAAAATAG
753240 GGT
254 GGT
753243 AAGGAAAAGA
Statistics
Matches: 216, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
269 11 0.05
270 179 0.83
271 26 0.12
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (271 bp):
TTTATGGTGCCAAACCATGAAAAGAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAGA
AAACAAACTATCATTCTATCAAAAACAGATGAAAGAAATGCTTTTCTTGCAACACCAAAGCAACA
ATGTCATGTATCCTAATGAAAGGAATCTGTTCTTAGCTCCCAATCTAGAAAAGAATGGAGACTAT
TACGAGAATCAATCCTTGCATAATTTAAGGGATGAATCTTTGATTTTAAGGAAAATAGGGTGAAT
AAAAGACTATA
Found at i:753987 original size:476 final size:475
Alignment explanation
Indices: 752974--754407 Score: 1814
Period size: 476 Copynumber: 3.0 Consensus size: 475
752964 AATAGGGTGA
* * * * * * *
752974 ATAA-AAGACTATATTTATGGTGCCTAACCCTGAAAAGAATGGGGATTCG-ATTAACTATTCATG
1 ATAAGAAGACAATGTTTATGGTGCATAATCCTTAAAAGAATGGGGATTAGTA-TAGCTATTCATG
* * *
753037 TTTGTCTTATTTAAGAGACAAACTTTCATTCTATCAAAAATGATGGAAAGGAAAGCTTTCGTTGC
65 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTCCTTGC
* * * *
753102 AACACCAAAGCAACAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTAGCTCCCAATTTTGAA
130 AACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCCAATCTTGAA
* * *
753167 AAGAATGGAGACTATTATGAGAATCGATGCTTGCCAAATTTAAGGGATGAATTTTTTATTTTAAG
195 AAGAATGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAA-TTTTTATTTTAAG
* * * *
753232 GAAAATAGGGTAAGGAAAAGATTTCCATGCAAAAAAAAATCATCAGTATCATTTATCATAATGAG
259 GAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-TGATGAG
** **
753297 GAGAATGTGTTTGTAGTGCCTAATCACAAAGTGAATGAAAATCATTACTAGAATCCATGTTTAAC
323 GAGAATGTGTTTACAGTGCCTAATCACAAAGTGAATGAAAATCATTACTAGAATCCATGTTTGTC
* *
753362 ATAATTGAGGTACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
388 ATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
753427 AAGCATCAATATCGTGTATCCTT
453 AAGCATCAATATCGTGTATCCTT
* * * ** * *
753450 ATTAGAAGACAATGTTTATGGGGCAAAAT-CTTGAAAAGAATGAAGAATGGTAT-GACTATTCAT
1 ATAAGAAGACAATGTTTATGGTGCATAATCCTT-AAAAGAATGGGGATTAGTATAG-CTATTCAT
* * * *
753513 ATTTGTCTTATTGAAGAGACAAACTCTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTCCTTG
64 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTCCTTG
* *
753578 TAACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCTAATCTTGA
129 CAACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCCAATCTTGA
* * *
753643 AAAGAATGGATACTGTTATGAGAATCGATGCTTGTCATATCTGAGGGATGAATTTTTATTTTAAG
194 AAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAG
* * * ** *
753708 GAAAATAGGGCAAAGTAAAGATTTTCATGCCGAAGAAAATCATCAATATCATTTATCTTGTTGAG
259 GAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-TGATGAG
* * ** * * *
753773 GAGAACT-TGTTTACAGTGTCTAATCCCAAAACGAATGAAGATCATTACTACAATCCAAGTTTGT
323 GAGAA-TGTGTTTACAGTGCCTAATCACAAAGTGAATGAAAATCATTACTAGAATCCATGTTTGT
* * * ** * *
753837 CTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTCAGAAGAAAGCCTTTCTTGTGAACCC
387 CATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
* *
753902 AAAACATCAATATCATGTATCCTT
452 AAAGCATCAATATCGTGTATCCTT
* *
753926 GTAAGAAGACGAA-GTTTATGGTGCTTAATCCTTAAAAGAATGGGGATTAGTATAGCTATTCATG
1 ATAAGAAGAC-AATGTTTATGGTGCATAATCCTTAAAAGAATGGGGATTAGTATAGCTATTCATG
* * * * * * *
753990 TTTGTCTTATTTAAAAGATAAACTTTGATTCTGTTAAAAATGATCGAAAAAAAAGCTTTTCTTGC
65 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTCCTTGC
* * ** * * *
754055 AACTCTAAAGCATCAATGTTGTGTAT-CT--T-AATAGAATGTCTTCTTGGCTCCCAATCTTGGA
130 AACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCCAATCTTGAA
* * *
754116 AAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTCAAAG
195 AAGAATGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGG
* *
754181 AAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCAAT-AATATCATTTATCCGAATAAG
260 AAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCTG-ATGAG
* *
754245 GAGAATGTGTTTATCA-TGCCTAATCACAAAGTGAAT-AAATAACATTACTAGAATCTATGTTTG
323 GAGAATGTGTTTA-CAGTGCCTAATCACAAAGTGAATGAAA-ATCATTACTAGAATCCATGTTTG
* * *
754308 TCACAATTGAGGCATGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
386 TCATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* *
754373 CAAGGCATCATTATCGTGTATCCTT
451 CAAAGCATCAATATCGTGTATCCTT
* *
754398 TTGAGAAGAC
1 ATAAGAAGAC
754408 TAATTTTGTA
Statistics
Matches: 812, Mismatches: 133, Indels: 30
0.83 0.14 0.03
Matches are distributed among these distances:
471 4 0.00
472 268 0.33
473 5 0.01
475 2 0.00
476 322 0.40
477 210 0.26
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
ATAAGAAGACAATGTTTATGGTGCATAATCCTTAAAAGAATGGGGATTAGTATAGCTATTCATGT
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTCCTTGCA
ACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTCTTGGCTCCCAATCTTGAAA
AGAATGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGA
AAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTGATGAGGAG
AATGTGTTTACAGTGCCTAATCACAAAGTGAATGAAAATCATTACTAGAATCCATGTTTGTCATA
ATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG
CATCAATATCGTGTATCCTT
Found at i:754808 original size:451 final size:453
Alignment explanation
Indices: 753499--756007 Score: 1973
Period size: 476 Copynumber: 5.3 Consensus size: 453
753489 ATGAAGAATG
* * * * *
753499 GTATGACTATTCATATTTGTCTTATTGAAGAGACAAACTCTGATTCTATCAAAAA-CGATGGAAA
1 GTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGAT-GAAA
* * ** *
753563 GAAAAGCTTTCCTTGTAACACCAAAGCATCAATGTCATGTATCCTAAT-AAAGAGAATGTGTTCT
65 GAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAAG-GAATGTGTTTT
* * * * * * * *
753627 TGGCTCCTAATCTTGAAAAGAATGGATACTGTTATGAGAATCGATGCTTGTCATATCTGAGGGAT
128 TGGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGAT
* * * * * *
753692 GAATTTTTATTTTAAGGAAAATAGGGCAAAGTAAAGATTTTCATGCCGAAGAAAATC-ATCAATA
192 GAACTTTTATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG-CAAAAAAAATCAAT-AATA
* ** * * * **
753756 TCATTTATCTTGTTGAGGAGAACT-TGTTTACAGTGTCTAATCCCAAAACGAATGAAGATCATTA
255 TCATTTATCCTAATGAGGAGAA-TATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTA
* * * ** * * *
753820 CTACAATCCAAGTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT-CAGAAGAA
319 CTAGAATCTATGTTTGTCACAATTGAGGCACAAACTTAGGCTTTACAAAAATTGGTGGA-AAGAA
* * * * * * *
753884 AGCCTTTCTTGTGAACCCAAAACATCAATATCATGTATCCTTGTAAGAAGACGAAGTTTATGGTG
383 AGCCTTTCTTG-GAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGAC-----TTA--ATG
753949 CTTAATCCTTAAAAGAATGGGGATTA
440 --T-AT-C-T---AG-AT---GATTA
* * *
753975 GTAT-AGCTATTCATGTTTGTCTTATTTAAAAGATAAACTTTGATTCTGTTAAAAAT-GATCGAA
1 GTATGA-CTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGAT-GAA
* * * * * ** * *
754038 AAAAAAGCTTTTCTTGCAACTCTAAAGCATCAATGTTGTGTAT-CT-T-AATA-GAATGTCTTCT
64 AGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATGAA-AGGAATGTGTTTT
* * * *
754099 TGGCTCCCAATCTTGGAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGAT
128 TGGTTCCCAATCTT-GAAAAAATGGAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGAT
* * *
754164 GAATTTTTATTTCAAAGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCAATAATAT
192 GAACTTTTATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAA-AAAATCAATAATAT
* * * * * *
754229 CATTTATCCGAATAAGGAGAATGTGTTTATCA-TGCCTAATCACAAAGTGAATAAATAACATTAC
256 CATTTATCCTAATGAGGAGAATATGTTTAT-AGTGCCTAATCACAAAGTGAATGAAGATCATTAC
** *
754293 TAGAATCTATGTTTGTCACAATTGAGGCATGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAG
320 TAGAATCTATGTTTGTCACAATTGAGGCACAAACTTAGGCTTTACAAAAATTGGTGGAAAGAAAG
* * * *
754358 CCTTTCTTGCGAAACCAAGGCATCATTATCGTGTATCCTTTTGAGAAGAC-TAAT-T-T-T-G-T
385 CCTTTCTTG-GAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTTAATGTATCTAGAT
754417 -ATTA
449 GATTA
* * *
754421 GTATGACTATTCATGTTTGCCTTATTTAATAGACAAACTTTGATTCTATCAAAAATGGATGAAGG
1 GTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGATGAAAG
* *
754486 AAATGCTTTTCTTGTGGCACCAAAGCATCAATGTCATGTATCCTAGTGAAAGGAATGTGTTTTTG
66 AAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAAGGAATGTGTTTTTG
* * * * *
754551 GTTCCCAATCATGATAAAAATGGAGCCTGTGATGAGAATCGATGCTTGCCTTATTTAAGAGATGA
130 GTTCCCAATCTTGA-AAAAATGGAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATG-
* * **
754616 AAACTTTTATTTTAAGGAAAATGGGGTAAATAAATTATTTCCATGCAAAAAAAATCAATAATATC
193 -AACTTTTATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAAAAATCAATAATATC
* *
754681 CTTTACCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTA
257 ATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTA
* * *
754746 GAATCTATGTTTGTCACAATTGAGGCACAAACGTAGACTTTAAAAAAATTAGG-GGAAAGAAAGC
322 GAATCTATGTTTGTCACAATTGAGGCACAAACTTAGGCTTTACAAAAATT-GGTGGAAAGAAAGC
* * *
754810 CTTTCTTAGAAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGGCTGTGTTTATGGTGCCA
386 CTTTCTT-GGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGAC----TTAAT-GT----
754875 AATCCTACAAAGAATGGCGATTA
441 -AT-CT----AG-AT---GATTA
* * * * *
754898 GAATGACTATTCTTGTTTATCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTTGAAAG
1 GTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGATGAAAG
* * * *
754963 AAATGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGCATCCTAAAGAAAGGAATGTGGTTTTG
66 AAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAAGGAATGTGTTTTTG
* * * * *
755028 GTTCCCAATCTTGAAAAAAATGGAGATTGTTACAAGAATCAAAGCTTGCGTTATTTAAGGGATGA
130 GTTCCCAATCTTG-AAAAAATGGAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGA
** * *
755093 ACTTTGGTTTTATGGAAAATAGGGTAAAGAAAAGACTTT-CATGCAAACGAAAATC-ATAAATAT
194 ACTTTTATTTTAAGGAAAATAGGGTAAAGAAAAGA-TTTCCATGCAAA-AAAAATCAAT-AATAT
** * ** *
755156 CATTTATATTAATGAGGAGAATTTGTTTATAGTGCCTAATCACAAAACGTATGAAGATCATTACT
256 CATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACT
* * * * *
755221 AGAATCCATGTTTGTCTCATTTAAGGCTCAAACTTAGGCTTTACAAAAATTGGTGGAAAGAAAGC
321 AGAATCTATGTTTGTCACAATTGAGGCACAAACTTAGGCTTTACAAAAATTGGTGGAAAGAAAGC
* ** * * * *
755286 CTTTCTAGTGAAACCAAAGTGTTAATATCATATATCCTTATAAGAAGACTATGCTTATGGTGCCT
386 CTTTCTTG-GAAACCAAAGCATCAATATCGTATATCCTTATGAGAAG---A--CTTA--ATG--T
755351 ACTCTTGAAAAGAATGGGGATTA
441 A-TC-T----AG-AT---GATTA
* * * * ** * *
755374 GTATAACTACTCTTGTTTGTCTTATTTAAGAGA-AGAACCGTGATTCTATAAAAAATCGGTTGAA
1 GTATGACTATTCATGTTTGTCTTATTTAAAAGACA-AACTTTGATTCTATCAAAAAT-GGATGAA
* * * * * *
755438 A-AACTGCTTTTCTTGTGACACCAAAGCGTCAATGTCATGCATCATAATGAAAGGAAAGTGTTTT
64 AGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAAGGAATGTGTTTT
* ** * * * * *
755502 TAGTTCCCAATCTT-AAAAATAGTGGAGACTGTTATAAGAAACGATGCTTGTCATATTTATGTGA
128 TGGTTCCCAATCTTGAAAAA-A-TGGAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGA
* * * * *
755566 AGAATTTTTTTTTTGAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAAT
191 TGAACTTTTATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAA-AAAATCAAT-AAT
* * * * ** **
755630 ATCATTTAACCTAATCAAGAGAATTTGTTTATAGTGCCTAATCACAAA-ACATATGAAGATTGTT
254 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGA-ATGAAGATCATT
* * ** * * * *
755694 AATAGAATCCATGTTTGTC-TTATTCGAGGCACAAATTTAGACTTTAC-AAAATTGGTGGGAGGA
318 ACTAGAATCTATGTTTGTCACAATT-GAGGCACAAACTTAGGCTTTACAAAAATTGGTGGAAAGA
* * * * * *
755757 AAGCCTTTCTTGCAAAACCAAATCATCAATATCGCACATCCTTATGAGAAGGCTATGTTTATGGT
382 AAGCCTTTCTTG-GAAACCAAAGCATCAATATCGTATATCCTTATGAGAA-G--A--CTTA--AT
**
755822 GCCTAATCCTGAAAAAAAAGGGGATTA
439 G--T-AT-CT--------AGATGATTA
* * *
755849 GTATAACTATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTTGAAA-
1 GTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGATGAAAG
* * * *
755913 AAATTACTTTTCTTGCGACACTAAAACATCAATGTCATGTATCCTAGTGAAAGGAATGTGTTTCT
66 AAA-TGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAAGGAATGTGTTTTT
* * *
755978 GGTTCTCAATCATAAAAAGAATGGAGACTG
129 GGTTCCCAATCTTGAAAA-AATGGAGACTG
756008 AGAGGAGAAT
Statistics
Matches: 1678, Mismatches: 269, Indels: 173
0.79 0.13 0.08
Matches are distributed among these distances:
446 89 0.05
447 6 0.00
449 4 0.00
450 67 0.04
451 166 0.10
452 46 0.03
456 4 0.00
458 1 0.00
459 1 0.00
461 1 0.00
464 2 0.00
466 3 0.00
471 5 0.00
472 257 0.15
473 11 0.01
474 17 0.01
475 246 0.15
476 560 0.33
477 181 0.11
478 3 0.00
479 6 0.00
480 1 0.00
481 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (453 bp):
GTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGATGAAAG
AAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATGAAAGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAAATGGAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAAC
TTTTATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAAAAATCAATAATATCATTT
ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAAT
CTATGTTTGTCACAATTGAGGCACAAACTTAGGCTTTACAAAAATTGGTGGAAAGAAAGCCTTTC
TTGGAAACCAAAGCATCAATATCGTATATCCTTATGAGAAGACTTAATGTATCTAGATGATTA
Found at i:757662 original size:476 final size:470
Alignment explanation
Indices: 756690--758164 Score: 1946
Period size: 476 Copynumber: 3.1 Consensus size: 470
756680 GATACGAATT
* *
756690 TTTTATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATT
1 TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
756755 TATCCTAATAA-GAGGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAT-T--AAT
66 TATCCTAATAAGGA-GAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATCTAGAAT
* *
756816 CTATGTTTGCCACAATTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTC
130 CCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-CCTTTC
* * ** *
756881 TTGCGAAACTAAAGCGTCAATATTGTGTATCAATATGAGAAGATTAAGTTTATAGTGCCTAATCT
194 TTGTGAAACTAAAGCATCAATATTGTGTATCCTTATGAGAAGACTAAGTTTATAGTGCCTAATCT
* * *
756946 AGAAAAGAATAGAGATTAGTATGA-TATTCATGTTTATCTTATTTAAGATACAAACTTTGATTCT
259 AGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* ** * * *
757010 ATAAAAAAC-AATGAAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCTTGTATCGTAA
324 ATCAAAAACGGTTG-AAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAA
* * ** * * * *
757074 TGAAGGGAATGTATTCTTCATTCCCAATCTTGAAAAGAATAGAAACTATTACGAGAATCGATGCA
388 T-AAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAGAG-AACTGTTAAGAGAATCGATGCT
*
757139 TGTCATATTTAAGTGATGAA
451 TGTCATATTTAAGGGATGAA
757159 TTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
1 -TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
*
757224 TTATCCTAATAAGGAGAATGTGTTTATAGTGTCTAATCACAAAGTGAATGAAGATCATTACTAGA
65 TTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA-T-CTAGA
*
757289 ATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACCTTT
128 ATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACC-TT
*
757354 TCTTGTGAAACTAAAGCATCAATATTGTTTATCCTTATGAGAAGACTAAGTTTATAGTGCCTAAT
192 TCTTGTGAAACTAAAGCATCAATATTGTGTATCCTTATGAGAAGACTAAGTTTATAGTGCCTAAT
* * **
757419 CCAGAATAGAATGGAGATTAGTATGACTATTTGTGTTTGTCTTATTTAAGAGACAAACTTTGATT
257 CTAGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
757484 CTATCAAAAACGGTTGAAAGAAATGCTTTCCGTGTGACACCAAAGCATCAATGTCATGTATCCTA
322 CTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTA
* * * *
757549 ATAAAGAGAATATGTTCTTGGCTCCAAATCTTGAAAAGAACGAGAATTGTTAAGAGAATCGATGC
387 ATAAAG-GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-GAGAACTGTTAAGAGAATCGATGC
*
757614 TTTTCATATTTAAGGGATGAA
450 TTGTCATATTTAAGGGATGAA
* * * * *
757635 TTATTATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATACAAACGAAATTCATCAATATCAA
1 TT-TTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
757700 TTATCCTAATGAGGAGAAAGTGTTTATAGTGCCTAATCACAAAGTGAATAAAGATCAATCCTAGA
65 TTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC-AT-CTAGA
* * * * * *
757765 ATCCATGTTTATCACAATTAAGGCACAAACTCAGATTTTTCAAAAATTGGTGGGGGAA-AAGCCT
128 ATCCATGTTTGTCACAATTAAGGCACGAACTTAGACTTTACAAAAATTGGT--GGGAAGAAACCT
* *** * * *
757829 TTCTTATGAAACTAAAGCATCAATACCATGTATTCTTATTAGAAGACT--GTTTATGGTGCCTAA
191 TTCTTGTGAAACTAAAGCATCAATATTGTGTATCCTTATGAGAAGACTAAGTTTATAGTGCCTAA
* * * * *
757892 TCTTGAAAATAATGGGGATTAGAATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
256 TCTAGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
757957 TCTATCAAAAAATGGTTGAAGGAAATGCTTTTCTTGCA-ACACCAAAGCGTCAATGTCATGTATC
321 TCTATC-AAAAACGGTTGAAAGAAATGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTATC
* * *
758021 CTAATGAATGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAGAATG-GAGACTGTTAGGAGAATC
384 CTAAT-AAAGGAATGTG-TTCTTGGTTCCCAATCTTGAAAAGAA-GAGA-ACTGTTAAGAGAATC
* * *
758085 AATGCTTGCCTTATTTAAGGGATGAA
445 GATGCTTGTCATATTTAAGGGATGAA
* * *
758111 GTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGGAAAAGAAAATC
1 -TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
758165 GTTGAAAGCT
Statistics
Matches: 883, Mismatches: 101, Indels: 36
0.87 0.10 0.04
Matches are distributed among these distances:
470 115 0.13
471 3 0.00
473 1 0.00
474 78 0.09
475 210 0.24
476 460 0.52
477 11 0.01
478 5 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (470 bp):
TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
TATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATCTAGAATC
CATGTTTGTCACAATTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACCTTTCTT
GTGAAACTAAAGCATCAATATTGTGTATCCTTATGAGAAGACTAAGTTTATAGTGCCTAATCTAG
AAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAACGGTTGAAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATAA
AGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAGAGAACTGTTAAGAGAATCGATGCTTGTCA
TATTTAAGGGATGAA
Found at i:758923 original size:20 final size:20
Alignment explanation
Indices: 758898--758947 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
758888 GTTACAAGCA
758898 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGTC-TC
*
758918 ATGTATCGATACAATGTCTT
1 ATGTATCGATACAATGTCTC
758938 ATGTATCGAT
1 ATGTATCGAT
758948 GCAAACAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACAATGTCTC
Found at i:759003 original size:20 final size:20
Alignment explanation
Indices: 758978--759034 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 20
758968 TACTGCCAGT
758978 TTCATGTATCGATACAATTG
1 TTCATGTATCGATACAATTG
758998 TTCATGTATCGATACAA-TG
1 TTCATGTATCGATACAATTG
* *
759017 ATCATATATCGATACAAT
1 TTCATGTATCGATACAAT
759035 GTATCAATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (20 bp):
TTCATGTATCGATACAATTG
Found at i:759026 original size:19 final size:19
Alignment explanation
Indices: 758979--759040 Score: 88
Period size: 20 Copynumber: 3.2 Consensus size: 19
758969 ACTGCCAGTT
*
758979 TCATGTATCGATACAATTGT
1 TCATGTATCGATACAA-TGA
758999 TCATGTATCGATACAATGA
1 TCATGTATCGATACAATGA
*
759018 TCATATATCGATACAATGTA
1 TCATGTATCGATACAATG-A
759038 TCA
1 TCA
759041 ATACAAAGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 19 0.49
20 20 0.51
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:767837 original size:13 final size:13
Alignment explanation
Indices: 767819--767845 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
767809 ACAATTGTCC
767819 ATGTATCGATACA
1 ATGTATCGATACA
767832 ATGTATCGATACA
1 ATGTATCGATACA
767845 A
1 A
767846 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:771197 original size:11 final size:10
Alignment explanation
Indices: 771180--771247 Score: 57
Period size: 10 Copynumber: 6.6 Consensus size: 10
771170 AAAAAATCAC
*
771180 AAAAAAATAG
1 AAAAAAAAAG
771190 AAAAAAAAAG
1 AAAAAAAAAG
**
771200 AAAAATCAA-
1 AAAAAAAAAG
**
771209 TCAAAAAAAG
1 AAAAAAAAAG
771219 AAAGATAAAAAG
1 AAA-A-AAAAAG
771231 AAAAAAAAAG
1 AAAAAAAAAG
771241 AAGAAAA
1 AA-AAAA
771248 GTGCCCGGAT
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
9 5 0.11
10 25 0.56
11 6 0.13
12 9 0.20
ACGTcount: A:0.81, C:0.03, G:0.10, T:0.06
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:771203 original size:19 final size:19
Alignment explanation
Indices: 771181--771247 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 19
771171 AAAAATCACA
771181 AAAAAATAGAAAAAAAAAG
1 AAAAAATAGAAAAAAAAAG
771200 AAAAATCAATCA-AAAAAAGAAAG
1 -AAAA--AAT-AGAAAAAA-AAAG
*
771223 ATAAAA-AGAAAAAAAAAG
1 AAAAAATAGAAAAAAAAAG
771241 AAGAAAA
1 AA-AAAA
771248 GTGCCCGGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
18 6 0.15
19 10 0.26
20 6 0.15
22 12 0.31
23 5 0.13
ACGTcount: A:0.81, C:0.03, G:0.10, T:0.06
Consensus pattern (19 bp):
AAAAAATAGAAAAAAAAAG
Found at i:771214 original size:31 final size:29
Alignment explanation
Indices: 771171--771235 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
771161 TAAAAAGATA
771171 AAAAATCACAAAAAAATAGAAA-A-AAAAAG
1 AAAAATCAC-AAAAAA-AGAAAGATAAAAAG
771200 AAAAATCAATCAAAAAAAGAAAGATAAAAAG
1 AAAAATC-A-CAAAAAAAGAAAGATAAAAAG
771231 AAAAA
1 AAAAA
771236 AAAAGAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
29 12 0.38
30 8 0.25
31 12 0.38
ACGTcount: A:0.78, C:0.06, G:0.08, T:0.08
Consensus pattern (29 bp):
AAAAATCACAAAAAAAGAAAGATAAAAAG
Found at i:772839 original size:36 final size:34
Alignment explanation
Indices: 772791--772893 Score: 109
Period size: 33 Copynumber: 3.0 Consensus size: 34
772781 CCTTCGAGTC
*
772791 AGTGGCATCCCTTCCCTTCACAAGCCCACACAAGTT
1 AGTGGCACCCCTT-CCTTCA-AAGCCCACACAAGTT
**
772827 AGTGGCACCCCTTTTTTCAAAGCCCACACAAGTT
1 AGTGGCACCCCTTCCTTCAAAGCCCACACAAGTT
* ** **
772861 GGTGG-AAACCTTTTTTCAAAGCCCACACAAGTT
1 AGTGGCACCCCTTCCTTCAAAGCCCACACAAGTT
772894 GGCAGTAACT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
33 26 0.43
34 19 0.31
35 4 0.07
36 12 0.20
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (34 bp):
AGTGGCACCCCTTCCTTCAAAGCCCACACAAGTT
Found at i:772878 original size:33 final size:32
Alignment explanation
Indices: 772807--773027 Score: 194
Period size: 32 Copynumber: 6.8 Consensus size: 32
772797 ATCCCTTCCC
* *
772807 TTCACAAGCCCACACAAGTTAGTGGCACCCCTTTT
1 TTCA-AAGCCCACACAAGTTGGTGGCA-ACC-TTT
*
772842 TTCAAAGCCCACACAAGTTGGTGGAAACCTTTT
1 TTCAAAGCCCACACAAGTTGGTGGCAACC-TTT
** * *
772875 TTCAAAGCCCACACAAGTTGGCAGTAACTTTT
1 TTCAAAGCCCACACAAGTTGGTGGCAACCTTT
* * ***
772907 TTCTAAAGCCCATATAAGCCAGTGGCAACCTTT
1 TTC-AAAGCCCACACAAGTTGGTGGCAACCTTT
* * *
772940 TTCAAAGCCTACACAAGTCGATGGCAACCTTT
1 TTCAAAGCCCACACAAGTTGGTGGCAACCTTT
* * * *
772972 CTCAAAAG-CCACACGAGTTAGTGGCAACC-CT
1 TTC-AAAGCCCACACAAGTTGGTGGCAACCTTT
773003 TTCAAAAGCCCACACAAGTTGGTGG
1 TTC-AAAGCCCACACAAGTTGGTGG
773028 TATTTCCTTC
Statistics
Matches: 151, Mismatches: 32, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
31 8 0.05
32 61 0.40
33 58 0.38
34 20 0.13
35 4 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (32 bp):
TTCAAAGCCCACACAAGTTGGTGGCAACCTTT
Found at i:772965 original size:32 final size:33
Alignment explanation
Indices: 772807--773021 Score: 131
Period size: 33 Copynumber: 6.6 Consensus size: 33
772797 ATCCCTTCCC
* * *
772807 TTCACAAGCCCACACAAGT-TAGTGGCACCCCTTTT
1 TTCAAAAGCCCACACAAGTCGA-TGGCA-ACC-TTT
* * *
772842 TTC-AAAGCCCACACAAGTTGGTGGAAACCTTTT
1 TTCAAAAGCCCACACAAGTCGATGGCAACC-TTT
* *** * *
772875 TTC-AAAGCCCACACAAGTTGGCAGTAACTTTT
1 TTCAAAAGCCCACACAAGTCGATGGCAACCTTT
* * * *
772907 TTCTAAAGCCCATATAAG-CCAGTGGCAACCTTT
1 TTCAAAAGCCCACACAAGTCGA-TGGCAACCTTT
*
772940 TTC-AAAGCCTACACAAGTCGATGGCAACCTTT
1 TTCAAAAGCCCACACAAGTCGATGGCAACCTTT
* * * *
772972 CTCAAAAG-CCACACGAGT-TAGTGGCAACC-CT
1 TTCAAAAGCCCACACAAGTCGA-TGGCAACCTTT
773003 TTCAAAAGCCCACACAAGT
1 TTCAAAAGCCCACACAAGT
773022 TGGTGGTATT
Statistics
Matches: 144, Mismatches: 29, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
31 9 0.06
32 55 0.38
33 59 0.41
34 18 0.12
35 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (33 bp):
TTCAAAAGCCCACACAAGTCGATGGCAACCTTT
Found at i:773165 original size:59 final size:58
Alignment explanation
Indices: 773031--773196 Score: 174
Period size: 59 Copynumber: 2.8 Consensus size: 58
773021 TTGGTGGTAT
* *
773031 TTCCTTC-CAAACCTAATGTTGTTGGCCTTGAATCAAACACATTGGCACTTGTATCACC
1 TTCCTTCTCAAACCTAATGTTGTTGGCCTTGAATC-AACACATTGGCACTCGTATAACC
* * *
773089 TTCGTTCTCAAGCCTAATGTTGTTGGCCTTGAATCAACACATTGGCACTCGTCA-AATC
1 TTCCTTCTCAAACCTAATGTTGTTGGCCTTGAATCAACACATTGGCACTCGT-ATAACC
* * *** * * *
773147 TTCCTTTTCAAAATCTAATGTCACTGGCCCTGAATCAACATATTAGCACT
1 TTCCTTCTC-AAACCTAATGTTGTTGGCCTTGAATCAACACATTGGCACT
773197 TTCTTCATCT
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
58 31 0.34
59 59 0.66
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (58 bp):
TTCCTTCTCAAACCTAATGTTGTTGGCCTTGAATCAACACATTGGCACTCGTATAACC
Found at i:777216 original size:52 final size:52
Alignment explanation
Indices: 777071--777199 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
777061 CGAAATATGA
777071 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
777123 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
777175 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
777200 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:777299 original size:19 final size:19
Alignment explanation
Indices: 777275--777339 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
777265 TAGCTTACAT
777275 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
777294 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
777307 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
777326 TGTATCGATACAAA
1 TGTATCGATACAAA
777340 TCGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:777311 original size:32 final size:32
Alignment explanation
Indices: 777270--777337 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
777260 GGTAGTAGCT
777270 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
777302 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
777334 TACA
1 TACA
777338 AATCGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:777312 original size:13 final size:13
Alignment explanation
Indices: 777294--777318 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
777284 ACAAAACTTA
777294 TGTATCGATACAT
1 TGTATCGATACAT
777307 TGTATCGATACA
1 TGTATCGATACA
777319 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:777991 original size:49 final size:49
Alignment explanation
Indices: 777919--778016 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
777909 ATCTTGCAGT
* **
777919 GTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGAAG
1 GTGCCAATGTGCAGATTCAAGGCCAACCACACTGGACTTAAAGATGAAG
* * *
777968 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAG
1 GTGCCAATGTGCAGATTCAAGGCCAACCACACTGGACTTAAAGATGAAG
778017 ATGAGAAAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (49 bp):
GTGCCAATGTGCAGATTCAAGGCCAACCACACTGGACTTAAAGATGAAG
Found at i:778130 original size:55 final size:52
Alignment explanation
Indices: 778031--778849 Score: 405
Period size: 43 Copynumber: 17.6 Consensus size: 52
778021 GAAAAGTGAT
* * * * * * **
778031 AAAGATGCCAATATGTTAATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G--A
* *
778086 AAAGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
778138 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
778185 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
778231 -AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
778277 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
778320 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
778366 -AAGGTGCCAATATCCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
778412 ---G-TGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
778455 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * * *
778500 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
778547 ---G-TGCCAATGTGCTCATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
778593 -AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACGT-AA-A-GG-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
778640 ---G--GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
778682 ---G-TGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * * *
778727 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
778774 ---G-TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
*
778820 -AAGGTGCCAATATGCTGATTCAAGGCCAGC
1 AAAGATGCCAATATGCTGATTCAAGGCCAGC
778850 GATATTGGGC
Statistics
Matches: 668, Mismatches: 54, Indels: 90
0.82 0.07 0.11
Matches are distributed among these distances:
42 2 0.00
43 332 0.50
44 17 0.03
45 7 0.01
46 6 0.01
47 6 0.01
48 17 0.03
49 198 0.30
50 1 0.00
51 2 0.00
52 39 0.06
54 1 0.00
55 40 0.06
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
Found at i:778271 original size:92 final size:86
Alignment explanation
Indices: 778138--778867 Score: 902
Period size: 92 Copynumber: 8.1 Consensus size: 86
778128 TAAAGATGGA
*
778138 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
778203 AAGGCCAGCTACATTGGACTT
66 AAGGCCAGCTACATTGGACTT
*
778224 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGC
778289 TGATTCAAGGCCAGCTACATTGGACTT
60 TGATTCAAGGCCAGCTACATTGGACTT
* * *
778316 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATCC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT----A--AAGGTGCCAATGTGC
*
778381 TGATTCAAGGCCAGCTATATTGGACTT
60 TGATTCAAGGCCAGCTACATTGGACTT
* *
778408 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
778473 AAGGCCAGCTACATTGGACTT
66 AAGGCCAGCTACATTGGACTT
* *
778494 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGC
*
778559 TCATTCAAGGCCAGCTACATTGGACTT
60 TGATTCAAGGCCAGCTACATTGGACTT
* * *
778586 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACGTAAAGGGGCCAATGTGC
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGC
778651 TGATTCAAGGCCAGCTACATTGGACTT
60 TGATTCAAGGCCAGCTACATTGGACTT
* * *
778678 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-----A-AAGGTGCCAATGTGC
* *
778743 TGATTCAAGGCCAGCGATATTGGACTT
60 TGATTCAAGGCCAGCTACATTGGACTT
* * *
778770 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT----A--AAGGTGCCAATGTGC
* * *
778835 TGATTCAAGGCCAGCGATATTGGGCTT
60 TGATTCAAGGCCAGCTACATTGGACTT
778862 AGAAGG
1 A-AAGG
778868 GTTGCCATCG
Statistics
Matches: 584, Mismatches: 33, Indels: 43
0.88 0.05 0.07
Matches are distributed among these distances:
86 117 0.20
88 3 0.01
90 2 0.00
91 8 0.01
92 450 0.77
93 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (86 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
AAGGCCAGCTACATTGGACTT
Found at i:778298 original size:21 final size:21
Alignment explanation
Indices: 778274--778341 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
778264 ATTGGACTTA
778274 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* * *
778295 AAGGCCAGCTACAT-TG--GACTTA
1 AAGG--TGCCA-ATGTGCTGA-TTC
778317 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
778338 AAGG
1 AAGG
778342 CCAGCTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:778320 original size:22 final size:22
Alignment explanation
Indices: 778295--778362 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
778285 GTGCTGATTC
778295 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
* * *
778317 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTACAT-TG--GACTTA
778338 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
778360 AAG
1 AAG
778363 ATGAAGGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCTACATTGGACTTA
Found at i:778384 original size:135 final size:135
Alignment explanation
Indices: 778138--778867 Score: 1000
Period size: 135 Copynumber: 5.4 Consensus size: 135
778128 TAAAGATGGA
* *
778138 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGGTGCCAATGTGCTGATT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATGTGCTGATT
778202 CAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
66 CAAGGCCAGCTACATTGGACTTAAAGA-GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
778267 GGACTT
130 GGACTT
778273 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA-AAGGTGCCAATGTGCTGATT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATGTGCTGATT
*
778337 CAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATCCTGATTCAAGGCCAGCTATATT
66 CAAGGCCAGCTACATTGGACTTAAAGA-GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
778402 GGACTT
130 GGACTT
*
778408 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTA-AAGGTGCCAATGTGCTGATT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATGTGCTGATT
*
778472 CAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
66 CAAGGCCAGCTACATTGGACTTAAAG-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
778537 GGACTT
130 GGACTT
* *
778543 AAAGGTGCCAATGTGCTCATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT----A-GAAGGTGCCAATGTGC
* * *
778608 TGATTCAAGGCCAGCTATATTGGACGT-AA-AG--GG-GCCAATGTGCTGATTCAAGGCCAGCTA
61 TGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
*
778668 CATTGGACTT
126 TATTGGACTT
* *
778678 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATGTGC
* * * *
778743 TGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGCCAATGTGCTGATTCAAGGCTAGCTA
61 TGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
*
778803 CATTGGACTT
126 TATTGGACTT
* * * *
778813 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAGAAGG
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGG
778868 GTTGCCATCG
Statistics
Matches: 553, Mismatches: 25, Indels: 33
0.91 0.04 0.05
Matches are distributed among these distances:
133 1 0.00
134 2 0.00
135 456 0.82
136 12 0.02
138 2 0.00
139 2 0.00
140 2 0.00
141 76 0.14
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (135 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATGTGCTGATT
CAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
GACTT
Found at i:778415 original size:227 final size:223
Alignment explanation
Indices: 778094--778867 Score: 1237
Period size: 227 Copynumber: 3.4 Consensus size: 223
778084 AAAAAGATGT
*
778094 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATATGCTGATT
778159 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
63 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
778224 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-A-AAGGTGCCAATGT
128 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATAT
* *
778287 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGC
187 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGC
*
778324 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATCCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
*
778389 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAA
66 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
778454 GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
131 GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT----AAGAAGGTGCCAATATGCTGA
778519 TTCAAGGCCAGCGATATTGGACTTAAAGGTGC
192 TTCAAGGCCAGCGATATTGGACTTAAAGGTGC
*
778551 CAATGTGCTCATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* *
778616 GGCCAGCTATATTGGACGTAAAGGGGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
66 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
*
778681 GGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
131 GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT----AAGAAGGTGCCAATATGCTGA
778746 TTCAAGGCCAGCGATATTGGACTTAAAGGTGC
192 TTCAAGGCCAGCGATATTGGACTTAAAGGTGC
*
778778 CAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* *
778843 GGCCAGCGATATTGGGCTTAGAAGG
66 GGCCAGCTATATTGGACTTA-AAGG
778868 GTTGCCATCG
Statistics
Matches: 518, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
221 40 0.08
223 1 0.00
226 1 0.00
227 431 0.83
228 4 0.01
229 1 0.00
230 40 0.08
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (223 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGTGC
Found at i:778455 original size:22 final size:22
Alignment explanation
Indices: 778430--778497 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
778420 GTGCTAATTC
778430 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
* * *
778452 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTACAT-TG--GACTTA
778473 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
778495 AAG
1 AAG
778498 AAGAAGGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCTACATTGGACTTA
Found at i:778903 original size:32 final size:31
Alignment explanation
Indices: 778855--779129 Score: 309
Period size: 32 Copynumber: 8.5 Consensus size: 31
778845 CCAGCGATAT
*
778855 TGGGCTTAGA-AGGGTTGCCATCGACTTGTG
1 TGGGCTTAGAGAGGGTTGCCACCGACTTGTG
778885 TGGGCTTCAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTT-AGAGAGGGTTGCCACCGACTTGTG
* * *
778917 TGGGCTTTGGGAAGGGTTTCCACCGACTTGTG
1 TGGGCTTAGAG-AGGGTTGCCACCGACTTGTG
* *
778949 TGGGCTTTGGGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTAGAG-AGGGTTGCCACCGACTTGTG
* *
778981 TGGGCTTTTAGAAAAAGGTTGCCACCGACTTGTG
1 TGGGC--TTAG-AGAGGGTTGCCACCGACTTGTG
* *
779015 TGGGCTTTGAGAAGGGTTGCCATCGACTTGTG
1 TGGGCTTAGAG-AGGGTTGCCACCGACTTGTG
* * *
779047 TGGGCTTTGGAGGGGGTTGCCACCAACTTGTG
1 TGGGC-TTAGAGAGGGTTGCCACCGACTTGTG
*
779079 TGGGCTTTAGAAAAGGGTTGCCACCGACTTGTG
1 TGGGC-TTAG-AGAGGGTTGCCACCGACTTGTG
779112 TGGGCTTTAGAGAAGGGT
1 TGGGC-TTAGAG-AGGGT
779130 GAAAGATGCC
Statistics
Matches: 213, Mismatches: 22, Indels: 17
0.85 0.09 0.07
Matches are distributed among these distances:
30 7 0.03
31 6 0.03
32 134 0.63
33 39 0.18
34 27 0.13
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (31 bp):
TGGGCTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:779030 original size:98 final size:96
Alignment explanation
Indices: 778855--779129 Score: 410
Period size: 98 Copynumber: 2.8 Consensus size: 96
778845 CCAGCGATAT
* * * *
778855 TGGGC-TTAGAAGGGTTGCCATCGACTTGTGTGGGCTTCAG-AGAGGGTTGCCACCGACTTGTGT
1 TGGGCTTTGGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGT
* *
778918 GGGCTTTGGGAAGGGTTTCCACCGACTTGTG
66 GGGCTTTGAGAAGGGTTGCCACCGACTTGTG
*
778949 TGGGCTTTGGGAAGGGTTGCCACCGACTTGTGTGGGCTTTTAGAAAAAGGTTGCCACCGACTTGT
1 TGGGCTTT-GGAAGGGTTGCCACCGACTTGTGTGGGC-TTTAGAAAAGGGTTGCCACCGACTTGT
*
779014 GTGGGCTTTGAGAAGGGTTGCCATCGACTTGTG
64 GTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
* *
779047 TGGGCTTTGGAGGGGGTTGCCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGGA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTG
779112 TGGGCTTTAGAGAAGGGT
65 TGGGCTTT-GAGAAGGGT
779130 GAAAGATGCC
Statistics
Matches: 164, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
94 5 0.03
95 2 0.01
96 26 0.16
97 42 0.26
98 89 0.54
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (96 bp):
TGGGCTTTGGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGT
GGGCTTTGAGAAGGGTTGCCACCGACTTGTG
Found at i:779122 original size:130 final size:130
Alignment explanation
Indices: 778867--779119 Score: 393
Period size: 130 Copynumber: 1.9 Consensus size: 130
778857 GGCTTAGAAG
*
778867 GGTTGCCATCGACTTGTGTGGGCTTCAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGGGAAGG
1 GGTTGCCACCGACTTGTGTGGGCTTCAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGGGAAGG
* * **
778932 GTTTCCACCGACTTGTGTGGGCTTTGGGAAGGGTTGCCACCGACTTGTGTGGGCTTTTAGAAAAA
66 GTTGCCACCAACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTTAGAAAAA
* * *
778997 GGTTGCCACCGACTTGTGTGGGCTT-TGAGAAGGGTTGCCATCGACTTGTGTGGGCTTT-GGAGG
1 GGTTGCCACCGACTTGTGTGGGCTTCAGAG-AGGGTTGCCACCGACTTGTGTGGGCTTTGGGA-A
779060 GGGTTGCCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTTT
64 GGGTTGCCACCAACTTGTGTGGGCTTT-GAAAAGGGTTGCCACCGACTTGTGTGGGCTTT
779120 AGAGAAGGGT
Statistics
Matches: 112, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
129 6 0.05
130 76 0.68
131 30 0.27
ACGTcount: A:0.15, C:0.19, G:0.36, T:0.30
Consensus pattern (130 bp):
GGTTGCCACCGACTTGTGTGGGCTTCAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGGGAAGG
GTTGCCACCAACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTTAGAAAAA
Found at i:779173 original size:33 final size:36
Alignment explanation
Indices: 779131--779220 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 36
779121 GAGAAGGGTG
779131 AAAGA-TGCCACAAAGTTGTGGACT-TAAAA-GGAA
1 AAAGAGTGCCACAAAGTTGTGGACTATAAAAGGGAA
*
779164 CAAG-GTGCCACAAAGTTGTGGACTATAAAAGGGAA
1 AAAGAGTGCCACAAAGTTGTGGACTATAAAAGGGAA
* *
779199 AAAGAGTGACACAGAGTTGTGG
1 AAAGAGTGCCACAAAGTTGTGG
779221 GCTTTGAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
33 22 0.45
34 5 0.10
35 7 0.14
36 15 0.31
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (36 bp):
AAAGAGTGCCACAAAGTTGTGGACTATAAAAGGGAA
Found at i:779220 original size:36 final size:34
Alignment explanation
Indices: 779131--779450 Score: 140
Period size: 34 Copynumber: 9.8 Consensus size: 34
779121 GAGAAGGGTG
779131 AAAGA-TGCCACAAAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACAAAGTTGTGGACTTAAAAGGAA
*
779164 CAAG-GTGCCACAAAGTTGTGGACTATAAAAGGGAA
1 AAAGAGTGCCACAAAGTTGTGGACT-TAAAA-GGAA
* * * **
779199 AAAGAGTGACACAGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACAAAGTTGTGGACTTAAAAGGAA
* ** * * * *
779231 GAAG-GTGCCACGGAGTCGTAGACTTAGAAGAAA
1 AAAGAGTGCCACAAAGTTGTGGACTTAAAAGGAA
** *
779264 AAAGAGTGCCACGGAGTTGTGGGCTT------AA
1 AAAGAGTGCCACAAAGTTGTGGACTTAAAAGGAA
* * *
779292 ACAG-GTGCCACGGAA-TTGTGGACTTAGAAGGAA
1 AAAGAGTGCCAC-AAAGTTGTGGACTTAAAAGGAA
** *
779325 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
1 AAAGAGTGCCACAAAGTTGTGGAC-TT-AAAAGGAA
* * * * *
779361 AAATA-TGCCATAGAGTTGTGGGCTT---TGGAA
1 AAAGAGTGCCACAAAGTTGTGGACTTAAAAGGAA
* *
779391 AGAAG-GTGCCACAGAGTCGTGGACTTTGAAAA-GAA
1 A-AAGAGTGCCACAAAGTTGTGGAC-TT-AAAAGGAA
** *
779426 AAAG-GTGCCACCGAGTCGTGGACTT
1 AAAGAGTGCCACAAAGTTGTGGACTT
779451 TGATGCCACT
Statistics
Matches: 227, Mismatches: 35, Indels: 50
0.73 0.11 0.16
Matches are distributed among these distances:
27 16 0.07
28 7 0.03
30 5 0.02
31 36 0.16
32 7 0.03
33 36 0.16
34 60 0.26
35 32 0.14
36 28 0.12
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (34 bp):
AAAGAGTGCCACAAAGTTGTGGACTTAAAAGGAA
Found at i:779327 original size:61 final size:63
Alignment explanation
Indices: 779165--779355 Score: 226
Period size: 61 Copynumber: 3.0 Consensus size: 63
779155 TAAAAGGAAC
* * * *
779165 AAGGTGCCAC-AAAGTTGTGGACTATAAAAGGGAAAAAGAGTGACACAGAGTTGTGGGCTTTGAA
1 AAGGTGCCACGGAA-TTGTGGACT-TAGAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
779229 AAG
61 AAG
* * * *
779232 AAGGTGCCACGGAGTCGTAGACTTAGAAGAAAAAAGAGTGCCACGGAGTTGTGGGCTT-AAA-
1 AAGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
*
779293 CAGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAA
779356 AGGAAAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
61 51 0.47
62 5 0.05
63 3 0.03
64 2 0.02
65 25 0.23
66 4 0.04
67 17 0.16
68 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.19
Consensus pattern (63 bp):
AAGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
Found at i:779436 original size:34 final size:34
Alignment explanation
Indices: 779294--779609 Score: 146
Period size: 34 Copynumber: 9.9 Consensus size: 34
779284 GGGCTTAAAC
* * * * *
779294 AGGTGCCACGGAATTGTGGACTTAG-AAGGAAAA
1 AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
* * * *
779327 AGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAA
1 AG-GTGCCACAGAGTCGTGGACTTTGAAAA-GAAAA
** * * * *
779363 ATATGCCATAGAGTTGTGGGCTTTGGAAAG---A
1 AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
779394 AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
1 AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
*
779428 AGGTGCCACCGAGTCGTGGACTTT-----G----
1 AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
* * *
779453 A--TGCCACTGAGTCGTGGATTTTGA---G-ACA
1 AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
*
779481 AGATGCCACTA-AGTCGTGGAC-TT-AAAAGGAACAA
1 AGGTGCCAC-AGAGTCGTGGACTTTGAAAA-GAA-AA
*
779515 AGAGTGCCACAGAGTCGTGGGCTTTG-AAA-AAAA
1 AG-GTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
* *
779548 A-GTGCCACGGAGTCGTGGAC-TT-AAAAGGAACA
1 AGGTGCCACAGAGTCGTGGACTTTGAAAA-GAAAA
* * *
779580 AGGTGCCACGGAGTTGTGGACTTTAAAAAG
1 AGGTGCCACAGAGTCGTGGACTTTGAAAAG
779610 GTATTTGAAG
Statistics
Matches: 224, Mismatches: 29, Indels: 59
0.72 0.09 0.19
Matches are distributed among these distances:
23 19 0.08
25 2 0.01
28 2 0.01
29 3 0.01
30 20 0.09
31 42 0.19
32 5 0.02
33 24 0.11
34 53 0.24
35 43 0.19
36 11 0.05
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (34 bp):
AGGTGCCACAGAGTCGTGGACTTTGAAAAGAAAA
Found at i:779436 original size:161 final size:158
Alignment explanation
Indices: 779133--779602 Score: 496
Period size: 161 Copynumber: 3.0 Consensus size: 158
779123 GAAGGGTGAA
* * * *
779133 AGATGCCAC-AAAGTTGTGGACTTAAAAGGAACAAG-GTGCCACAAAGTTGTGGACTATAAAAGG
1 AGATGCCACGGAA-TTGTGGACTTAGAAGGAACAAGAGTGCCACAAAGTTGTGGACTTTAAAAAG
* * * *
779196 GAAAAAGAGTGACACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTAGACTTAGAAG
65 GAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTGAAA
*
779261 A-AAAAAGAGTGCCACGGAGTTGTGGGCTT
130 AGAAAAAG-GTGCCACGGAGTTGTGGACTT
* * ** *
779290 AAACAGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 ----AGATGCCACGGAATTGTGGACTTAGAAGGAACAAGAGTGCCACAAAGTTGTGGACTTTAAA
* * * *
779355 AAGGAAAAATA-TGCCATAGAGTTGTGGGCTTTGGAAAGAAGGTGCCACAGAGTCGTGGACTTTG
62 AAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTG
* *
779419 AAAAGAAAAAGGTGCCACCGAGTCGTGGACTT
127 AAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
* * * * * * * *
779451 TGATGCCACTGAGTCGTGGATTTTG-A-G-ACAAGA-TGCCACTAAGTCGTGGAC-TT-AAAAGG
1 AGATGCCACGGAATTGTGGACTTAGAAGGAACAAGAGTGCCACAAAGTTGTGGACTTTAAAAAGG
* * *
779510 AACAAAGAGTGCCACAGAGTCGTGGGCTTTGAAAAAAAAGTGCCACGGAGTCGTGGAC-TT-AAA
66 AA-AAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTGAAA
*
779573 AGGAACAAGGTGCCACGGAGTTGTGGACTT
130 A-GAAAAAGGTGCCACGGAGTTGTGGACTT
779603 TAAAAAGGTA
Statistics
Matches: 261, Mismatches: 42, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
151 12 0.05
152 33 0.13
153 57 0.22
154 5 0.02
155 1 0.00
156 1 0.00
157 18 0.07
161 96 0.37
162 38 0.15
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.20
Consensus pattern (158 bp):
AGATGCCACGGAATTGTGGACTTAGAAGGAACAAGAGTGCCACAAAGTTGTGGACTTTAAAAAGG
AAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTGAAAA
GAAAAAGGTGCCACGGAGTTGTGGACTT
Found at i:779464 original size:23 final size:23
Alignment explanation
Indices: 779431--779476 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
779421 AAGAAAAAGG
779431 TGCCACCGAGTCGTGGACTTTGA
1 TGCCACCGAGTCGTGGACTTTGA
* *
779454 TGCCACTGAGTCGTGGATTTTGA
1 TGCCACCGAGTCGTGGACTTTGA
779477 GACAAGATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.30
Consensus pattern (23 bp):
TGCCACCGAGTCGTGGACTTTGA
Found at i:779590 original size:33 final size:34
Alignment explanation
Indices: 779478--779607 Score: 137
Period size: 33 Copynumber: 3.9 Consensus size: 34
779468 GGATTTTGAG
* **
779478 ACAAGATGCCACTAAGTCGTGGAC-TTAAAAGGA
1 ACAAGGTGCCACGGAGTCGTGGACTTTAAAAGGA
* *
779511 ACAAAGAGTGCCACAGAGTCGTGGGCTTTGAAAA--A
1 AC-AAG-GTGCCACGGAGTCGTGGACTTT-AAAAGGA
779546 A-AA-GTGCCACGGAGTCGTGGAC-TTAAAAGGA
1 ACAAGGTGCCACGGAGTCGTGGACTTTAAAAGGA
*
779577 ACAAGGTGCCACGGAGTTGTGGACTTTAAAA
1 ACAAGGTGCCACGGAGTCGTGGACTTTAAAA
779608 AGGTATTTGA
Statistics
Matches: 81, Mismatches: 7, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
29 4 0.05
30 2 0.02
31 19 0.23
32 2 0.02
33 22 0.27
34 9 0.11
35 17 0.21
36 2 0.02
37 4 0.05
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.18
Consensus pattern (34 bp):
ACAAGGTGCCACGGAGTCGTGGACTTTAAAAGGA
Found at i:780589 original size:11 final size:10
Alignment explanation
Indices: 780570--780607 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
780560 TTCTTCTTCT
780570 TTTTTTTTTG
1 TTTTTTTTTG
780580 TTTTTGTTTTG
1 TTTTT-TTTTG
*
780591 TTTTTTTTTC
1 TTTTTTTTTG
780601 TTTTTTT
1 TTTTTTT
780608 GTGAAGATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:780604 original size:20 final size:20
Alignment explanation
Indices: 780553--780604 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
780543 TGAAAAGGGG
780553 TTTTTTCTTCTTCTTCTTTTT
1 TTTTTTCTT-TTCTTCTTTTT
*
780574 TTTTTGT-TTTTGTT-TTGTTT
1 TTTTT-TCTTTTCTTCTT-TTT
780594 TTTTTTCTTTT
1 TTTTTTCTTTT
780605 TTTGTGAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
19 3 0.11
20 16 0.59
21 7 0.26
22 1 0.04
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.85
Consensus pattern (20 bp):
TTTTTTCTTTTCTTCTTTTT
Found at i:787909 original size:52 final size:52
Alignment explanation
Indices: 787831--787959 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
787821 CGAAATATGA
*
787831 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACAGCTGGGC
*
787883 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACAGCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACAGCTGGGC
*
787935 AAATTTGCCTGCATGTATCAATACA
1 AAATTTGCCTGCATGTATCGATACA
787960 AAGATTAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACAGCTGGGC
Found at i:787969 original size:52 final size:52
Alignment explanation
Indices: 787831--787979 Score: 203
Period size: 52 Copynumber: 2.9 Consensus size: 52
787821 CGAAATATGA
* *
787831 AAATTTGCCTGCATGTATCGATACATTTCA-TAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-ATCATTAGTGTATCGATACAGCTGGGC
**
787883 AAATTTGCCTGCATGTATCGATAC-ATTTTATAGTGTATCGATACAGCTGGGC
1 AAATTTGCCTGCATGTATCGATACAATCAT-TAGTGTATCGATACAGCTGGGC
* **
787935 AAATTTGCCTGCATGTATCAATACAAAGATTAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACAATCATTAGTGTATCGATACA
787980 ATGTATCGAT
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
50 1 0.01
52 83 0.97
53 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACAATCATTAGTGTATCGATACAGCTGGGC
Found at i:787986 original size:13 final size:13
Alignment explanation
Indices: 787968--787992 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
787958 CAAAGATTAG
787968 TGTATCGATACAA
1 TGTATCGATACAA
787981 TGTATCGATACA
1 TGTATCGATACA
787993 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:788059 original size:19 final size:19
Alignment explanation
Indices: 788035--788099 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
788025 TAGCTTACAT
788035 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
788054 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
788067 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
788086 TGTATCGATACAAA
1 TGTATCGATACAAA
788100 TCGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:788071 original size:32 final size:32
Alignment explanation
Indices: 788030--788097 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
788020 GGTAGTAGCT
788030 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
788062 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
788094 TACA
1 TACA
788098 AATCGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:788072 original size:13 final size:13
Alignment explanation
Indices: 788054--788078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
788044 ACAAAACTTA
788054 TGTATCGATACAT
1 TGTATCGATACAT
788067 TGTATCGATACA
1 TGTATCGATACA
788079 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:793176 original size:155 final size:156
Alignment explanation
Indices: 792610--793303 Score: 783
Period size: 154 Copynumber: 4.5 Consensus size: 156
792600 AAGTTCAAGG
* * * * * * **
792610 AAAATCACGAATATGCCCCTAGGGGATACCTTCGATAT-ATAAGTA-CCTGATACCTTTAAAGGA
1 AAAATTACGAAAATGCCCTTAGAGGATACCTTCGACATGA-AAGTATCCTGGTACCCCTAAAGGA
* * *
792673 CTTAAAAAGGACTATAAAAGGGATTAACCTATCCTAAATACCCACCTTCGACATAAAAGCAGACT
65 CTTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGACATAAAAGCAGACC
* * *
792738 CGGTTATAACCTAGGACTCAAATTTAA
130 CGATGATAACCTAGGACTCAATTTTAA
* * * * ***
792765 AAAATTACGAAAATGCCTTTAGAAGATACCTTCGACATGAAAGTATCTTGATACTTGTAAAGGAC
1 AAAATTACGAAAATGCCCTTAGAGGATACCTTCGACATGAAAGTATCCTGGTACCCCTAAAGGAC
* * * * *
792830 TTAAAAAGGAC--TAAAAGGGGTGAACCTATCCTAAATACCCACTTTCGACGTAAAAGCAAACCC
66 TTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGACATAAAAGCAGACCC
* ** *
792893 GGTGATAACCTAGGACTTGATTTTGA
131 GATGATAACCTAGGACTCAATTTTAA
* *
792919 AAAATTACGAAAATACCCTTAGGGGATACCTTCGACATGAAAGTATCCTGGTA-CCCTAAAGGAC
1 AAAATTACGAAAATGCCCTTAGAGGATACCTTCGACATGAAAGTATCCTGGTACCCCTAAAGGAC
* *
792983 TTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATA-CTACCTTTGGCATAAAAGC-GAACC
66 TTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGACATAAAAGCAG-ACC
* * *
793046 CGATAATAACCTAGGACTCGATTCTAA
130 CGATGATAACCTAGGACTCAATTTTAA
* * * *
793073 AAAATTATGAAAATGCCCTTAGAGGATACCTTCAACGTGAAAGTATCCTGGTACCCCTAAAGCAC
1 AAAATTACGAAAATGCCCTTAGAGGATACCTTCGACATGAAAGTATCCTGGTACCCCTAAAGGAC
* *
793138 TTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGGCATACAAGCAGA-CC
66 TTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGACATAAAAGCAGACCC
* * **
793202 TAGTGATAACTTAAAACTCAATTTTAAAAA
131 GA-TGATAACCTAGGACTCAATTTT---AA
* * * * * * *
793232 AAAAATATGAAAATGCCCTTAGGGGATACCTTTGACGTGAAAGTATCATGGTGCCCCTAAAGGAC
1 AAAATTACGAAAATGCCCTTAGAGGATACCTTCGACATGAAAGTATCCTGGTACCCCTAAAGGAC
793297 TATAAAA
66 T-TAAAA
793304 GGGGTAAACC
Statistics
Matches: 462, Mismatches: 64, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
153 19 0.04
154 201 0.44
155 113 0.24
156 62 0.13
157 1 0.00
159 61 0.13
160 5 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (156 bp):
AAAATTACGAAAATGCCCTTAGAGGATACCTTCGACATGAAAGTATCCTGGTACCCCTAAAGGAC
TTAAAAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGACATAAAAGCAGACCC
GATGATAACCTAGGACTCAATTTTAA
Found at i:793332 original size:148 final size:145
Alignment explanation
Indices: 793142--793421 Score: 355
Period size: 148 Copynumber: 1.9 Consensus size: 145
793132 AAGCACTTAA
* * * * *
793142 AAAGGACTATAAAAGGGATGAACCTATCCTAAATACCTACCTTCGGCATACAAGC-AGACCTAGT
1 AAAGGACTATAAAAGGGATAAACCTATCCTAAATACCCACCTTCAGCATAAAAGCGA-ACCCAGT
* * * *
793206 GATAACTTAAAACTCAATTTTAAAAAAAAAATATGAAAATGCCCTTAGGGGATACCTTTGACGTG
65 GATAACCTAAAACTCAATTTT---AAAAAAATATAAAAATACCCTTAGGGGATACCTTTGACGTA
793271 AAAGTATCATGGTGCCCCT
127 AAAGTATCATGGTGCCCCT
* *
793290 AAAGGACTATAAAAGGGGTAAACCTGTCCTAAATACCCACCTTCAGCATAAAAGCGAACCCAGTG
1 AAAGGACTATAAAAGGGATAAACCTATCCTAAATACCCACCTTCAGCATAAAAGCGAACCCAGTG
* * * * * * *
793355 TTAACCTAAGACTTAGTTTTGAAAAATTATAAAAATACCCTTAGGGGATACCTTTTACGTAAAAG
66 ATAACCTAAAACTCAATTTTAAAAAAATATAAAAATACCCTTAGGGGATACCTTTGACGTAAAAG
793420 TA
131 TA
793422 CCCAATACCC
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
145 41 0.36
148 71 0.63
149 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (145 bp):
AAAGGACTATAAAAGGGATAAACCTATCCTAAATACCCACCTTCAGCATAAAAGCGAACCCAGTG
ATAACCTAAAACTCAATTTTAAAAAAATATAAAAATACCCTTAGGGGATACCTTTGACGTAAAAG
TATCATGGTGCCCCT
Found at i:793957 original size:13 final size:13
Alignment explanation
Indices: 793939--793963 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
793929 TTTTAGAATT
793939 TGTATCGATACAA
1 TGTATCGATACAA
793952 TGTATCGATACA
1 TGTATCGATACA
793964 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:794000 original size:20 final size:21
Alignment explanation
Indices: 793949--794003 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 21
793939 TGTATCGATA
793949 CAATGTATCGATACATAAGTT
1 CAATGTATCGATACATAAGTT
* * *
793970 --TTGTGTCGATACATTA-TT
1 CAATGTATCGATACATAAGTT
793988 CAATGTATCGATACAT
1 CAATGTATCGATACAT
794004 GCAGGCAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
18 2 0.07
19 13 0.48
20 12 0.44
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (21 bp):
CAATGTATCGATACATAAGTT
Found at i:798107 original size:166 final size:164
Alignment explanation
Indices: 797933--798349 Score: 481
Period size: 166 Copynumber: 2.5 Consensus size: 164
797923 GAAAATTTCA
* * *
797933 AAGAAAAAATTC-AAAACTCATAAAAATAAATTAATTTTTCAAAAATAATTTAATATGAATTAAA
1 AAGAAAAAA-TCAAAAACTCATAAAAATGAATAAATTTTT-AAAAATGATTTAATATGAATTAAA
*
797997 TAATAATATTTTATGAATTTTAAAA-TTCAAAAA-CAAATAAAAATTCCCCCGAAAAAAGTTACA
64 TAATAATATTTTATGAATTTTAAAAGTT-AAAAATC-AA-AAAAATTCCCCCGAAAAAACTTA-A
*** * **
798060 G-AGTAGAAAACTTTGTATTTCA-AAAATAGGGAAACTTT
125 GAAGTAGAAAACAACGTATTTCAGAAAAAAAAGAAACTTT
*
798098 AAGGAAAAAATCAAAAACTCATGAAAATGAATAAATTTTTAAAAATTGATTTAATATGAAATT-A
1 AA-GAAAAAATCAAAAACTCATAAAAATGAATAAATTTTTAAAAA-TGATTTAATATG-AATTAA
* *
798162 ATAATGATATTTTATGAATTTTAAAAGTTAAAAATCAAAAAAATTCCCCCGAAAAAACTTATGAA
63 ATAATAATATTTTATGAATTTTAAAAGTTAAAAATCAAAAAAATTCCCCCGAAAAAACTTAAGAA
*
798227 GTAGAAAACAACGTATTTCAGAAAAAAAAGAAATTTT
128 GTAGAAAACAACGTATTTCAGAAAAAAAAGAAACTTT
* * *
798264 AAGAAAAAAATCAAAAACTCA-AGAAAATGAATGAATTTTTACAAACTGATTTAATGGTG-ATTA
1 AAG-AAAAAATCAAAAACTCATA-AAAATGAATAAATTTTTA-AAAATGATTTAAT-ATGAATTA
* * *
798327 AAAAATAATATTTAAGGAATTTT
62 AATAATAATATTTTATGAATTTT
798350 GATGTTGAAA
Statistics
Matches: 217, Mismatches: 22, Indels: 25
0.82 0.08 0.09
Matches are distributed among these distances:
164 1 0.00
165 53 0.24
166 151 0.70
167 12 0.06
ACGTcount: A:0.53, C:0.08, G:0.09, T:0.30
Consensus pattern (164 bp):
AAGAAAAAATCAAAAACTCATAAAAATGAATAAATTTTTAAAAATGATTTAATATGAATTAAATA
ATAATATTTTATGAATTTTAAAAGTTAAAAATCAAAAAAATTCCCCCGAAAAAACTTAAGAAGTA
GAAAACAACGTATTTCAGAAAAAAAAGAAACTTT
Found at i:799313 original size:43 final size:43
Alignment explanation
Indices: 799265--799347 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
799255 GACTGAGCCG
* *
799265 ACGGGCAAATAAAAAGATGAAGAAGTCTACCGGGTCTAAGCTA
1 ACGGGCAAATAAAAAGATGAAAAAGTCTACCAGGTCTAAGCTA
*
799308 ACGGGCAAATAAAAAGATGAAAAAGTCTCCCAGGTCTAAG
1 ACGGGCAAATAAAAAGATGAAAAAGTCTACCAGGTCTAAG
799348 TCGATGGGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.16
Consensus pattern (43 bp):
ACGGGCAAATAAAAAGATGAAAAAGTCTACCAGGTCTAAGCTA
Found at i:799967 original size:13 final size:13
Alignment explanation
Indices: 799949--799974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
799939 TCACTATTCA
799949 TGTATCGATACAT
1 TGTATCGATACAT
799962 TGTATCGATACAT
1 TGTATCGATACAT
799975 CATAAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:800834 original size:44 final size:44
Alignment explanation
Indices: 800786--801028 Score: 201
Period size: 44 Copynumber: 5.5 Consensus size: 44
800776 AGGAGGCATG
* *
800786 TTTGACAAAGGTGGTAACCATACGTCAAATTGGAATGAAAAGAA
1 TTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAA
* * * * * * *
800830 TTTGACCAGGGTGGTAACCATATGTCAGAT--AAAAGAGAGGCATA
1 TTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAG-A-A
* *
800874 TTTGACCAAGGTGGTAACCATATGTCAAATCAGAATGAAAAGAA
1 TTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAA
* * * * *
800918 TTTGA-CTAGTGTGGCAACCATACGTTAGAA-AGGAA--AAAGGTAGA
1 TTTGACCAAG-GTGGTAACCATACGTCA-AATCGGAATGAAAAG-A-A
* *
800962 TTTGACCAAGGTGGTTACCATACGTCAAATCGAAATGAAAAGAA
1 TTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAA
* * *
801006 TCTGACCAGGGTGGTAACGATAC
1 TTTGACCAAGGTGGTAACCATAC
801029 ATCTGACAAG
Statistics
Matches: 155, Mismatches: 32, Indels: 24
0.73 0.15 0.11
Matches are distributed among these distances:
42 10 0.06
43 7 0.05
44 121 0.78
45 7 0.05
46 10 0.06
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (44 bp):
TTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAA
Found at i:800937 original size:88 final size:86
Alignment explanation
Indices: 800778--801053 Score: 302
Period size: 88 Copynumber: 3.1 Consensus size: 86
800768 AAATAGGAAG
* * *
800778 GAGGCATGTTTGACAAAGGTGGTAACCATACGTCAAATTGGAATGAAAAGAATTTGACCAGGGTG
1 GAGGCATATTTGACCAAGGTGGTAACCATACGTCAAA-TCGAATGAAAAGAATTTGACCAGGGTG
* *
800843 GTAACCATATGTCAGATAA-AAGA
65 GCAACCATACGTCAGA-AAGAA-A
* * *
800866 GAGGCATATTTGACCAAGGTGGTAACCATATGTCAAATCAGAATGAAAAGAATTTGACTAGTGTG
1 GAGGCATATTTGACCAAGGTGGTAACCATACGTCAAATC-GAATGAAAAGAATTTGACCAGGGTG
*
800931 GCAACCATACGTTAGAAAGGAAA
65 GCAACCATACGTCAGAAA-GAAA
* * * * *
800954 AAGGTAGATTTGACCAAGGTGGTTACCATACGTCAAATCGAAATGAAAAGAATCTGACCAGGGTG
1 GAGGCATATTTGACCAAGGTGGTAACCATACGTCAAATCG-AATGAAAAGAATTTGACCAGGGTG
* * * *
801019 GTAACGATACATCTGACAAGAAGA
65 GCAACCATACGTCAGA-AAGAA-A
*
801043 GAGGCAAATTT
1 GAGGCATATTT
801054 TGACTAGGCT
Statistics
Matches: 157, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
87 4 0.03
88 140 0.89
89 13 0.08
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (86 bp):
GAGGCATATTTGACCAAGGTGGTAACCATACGTCAAATCGAATGAAAAGAATTTGACCAGGGTGG
CAACCATACGTCAGAAAGAAA
Found at i:801513 original size:90 final size:89
Alignment explanation
Indices: 801392--801651 Score: 342
Period size: 90 Copynumber: 2.9 Consensus size: 89
801382 TACCCTAGTA
* *
801392 AAATCAAGCTT-CATGATGCATCAATATCATCTAGTGGTTAGATGAAGGGGATATGATTAGGAAT
1 AAATCAGGCTTAC-TGATGCATCAATACCATCTAGTGGTT-GATGAAGGGGATATGATTAGGAAT
801456 GTGTGGGCTGCACCTTGCCCCAAAAG
64 GTGTGGGCTGCACCTTGCCCCAAAAG
* * *
801482 AAATTAGGCTTAGTGATGCATCAATACCATCTAGTGGTTGCATGATGGGGATATGATTAGGAATG
1 AAATCAGGCTTACTGATGCATCAATACCATCTAGTGGTTG-ATGAAGGGGATATGATTAGGAATG
* * * *
801547 TGTGGGCTGTACCTTGGCCCATAGG
65 TGTGGGCTGCACCTTGCCCCAAAAG
*
801572 AAATCAGGCTTACTAATGCATCAATACCATCTAGTAGTGGTTGGATGAAGGGGATATGATTAGGA
1 AAATCAGGCTTACTGATGCATCAATACCATC---TAGTGGTT-GATGAAGGGGATATGATTAGGA
* *
801637 ATATATGGGCTGCAC
62 ATGTGTGGGCTGCAC
801652 AATTTCTCTT
Statistics
Matches: 148, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
89 1 0.01
90 106 0.72
93 40 0.27
94 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (89 bp):
AAATCAGGCTTACTGATGCATCAATACCATCTAGTGGTTGATGAAGGGGATATGATTAGGAATGT
GTGGGCTGCACCTTGCCCCAAAAG
Found at i:806889 original size:156 final size:150
Alignment explanation
Indices: 806660--806986 Score: 426
Period size: 156 Copynumber: 2.1 Consensus size: 150
806650 CTAAGTTCAA
* * * *
806660 GAAAAATTATGAAAATACCTTTGGGGATACCTTCGACGTATAAGTACCTACCCCTAAAGAACTTA
1 GAAAAATTATGAAAATACCTTAGAGGATACATTCGACGGATAAGTACCTACCCCTAAAGAACTTA
* *
806725 AAAAGGACTAT-AAAAGGGATGAACCTATCCTAAATACTCACCTTCAACATAAAAGCGGACTTGG
66 AAAAGGACTATAAAAAGGG-TGAACCTATCCTAAATACCCACCTTCAACATAAAAGCGGACCTGG
*
806789 TTATAACTTAGGACTCGATTCT
130 TGATAACTTA-GACTCGATTCT
*
806811 GAAAAATTATGAAAATACCTCTAGAGGATACATTCGACGGGA-AAGTATCCAGGTACTCCTAAA-
1 GAAAAATTATGAAAATACCT-TAGAGGATACATTCGAC-GGATAAGTA-CC---TACCCCTAAAG
* *
806874 AGACTTAAAAAGGACTATAAAAAGGGTGAACCTATCCTAAATACCCACCTTCGAGATAAAAGCGG
60 A-ACTTAAAAAGGACTATAAAAAGGGTGAACCTATCCTAAATACCCACCTTCAACATAAAAGCGG
*
806939 ACCTGGTGATAGCTTAGACTCGATTCT
124 ACCTGGTGATAACTTAGACTCGATTCT
* * *
806966 AAAAAATTAAGAAAATGCCTT
1 GAAAAATTATGAAAATACCTT
806987 TAAGAGATAC
Statistics
Matches: 154, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
151 20 0.13
152 19 0.12
153 4 0.03
154 1 0.01
155 29 0.19
156 74 0.48
157 7 0.05
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (150 bp):
GAAAAATTATGAAAATACCTTAGAGGATACATTCGACGGATAAGTACCTACCCCTAAAGAACTTA
AAAAGGACTATAAAAAGGGTGAACCTATCCTAAATACCCACCTTCAACATAAAAGCGGACCTGGT
GATAACTTAGACTCGATTCT
Found at i:807789 original size:13 final size:13
Alignment explanation
Indices: 807771--807796 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
807761 ATTTTTCTGA
807771 TGTATCGATACAT
1 TGTATCGATACAT
807784 TGTATCGATACAT
1 TGTATCGATACAT
807797 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:807793 original size:34 final size:32
Alignment explanation
Indices: 807750--807814 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 32
807740 TACAAGCCAA
**
807750 TGTATCGATACATTTTTCTGATGTATCGATACAT
1 TGTATCGATACATACTT-TG-TGTATCGATACAT
807784 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
807815 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 12 0.41
33 2 0.07
34 15 0.52
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:810389 original size:13 final size:13
Alignment explanation
Indices: 810371--810409 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
810361 ATAATCCCCC
*
810371 TGTATCGATACAG
1 TGTATCGATACAA
810384 TGTATCGATACAA
1 TGTATCGATACAA
810397 TGTATCGATACAA
1 TGTATCGATACAA
810410 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:814965 original size:12 final size:12
Alignment explanation
Indices: 814950--814983 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
814940 TCCGAGTCAC
814950 CATCTTCATCAA
1 CATCTTCATCAA
*
814962 CATCTTCATCAT
1 CATCTTCATCAA
*
814974 CTTCTTCATC
1 CATCTTCATC
814984 CTTGATGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (12 bp):
CATCTTCATCAA
Found at i:818454 original size:10 final size:10
Alignment explanation
Indices: 818439--818484 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
818429 CATATTTTTA
*
818439 TTTTTTCTTT
1 TTTTTTCTCT
818449 TTTTTTC-CT
1 TTTTTTCTCT
*
818458 TTTTTTC-AT
1 TTTTTTCTCT
818467 TTTTTTCTCT
1 TTTTTTCTCT
*
818477 CTTTTTCT
1 TTTTTTCT
818485 TTCCCAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 16 0.52
10 15 0.48
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTTCTCT
Found at i:818463 original size:19 final size:20
Alignment explanation
Indices: 818439--818486 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
818429 CATATTTTTA
818439 TTTTTTCTTTTTTTTTC-CT
1 TTTTTTCTTTTTTTTTCTCT
*
818458 TTTTTTC-ATTTTTTTCTCT
1 TTTTTTCTTTTTTTTTCTCT
*
818477 CTTTTTCTTT
1 TTTTTTCTTT
818487 CCCAAGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 8 0.33
19 15 0.62
20 1 0.04
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTTTCTTTTTTTTTCTCT
Found at i:821513 original size:155 final size:154
Alignment explanation
Indices: 821354--821710 Score: 425
Period size: 155 Copynumber: 2.3 Consensus size: 154
821344 GAACGTGAGC
* * *
821354 ATTTAGGATATGTTTATCCCATCTAAATCCTTTTTAGGTCCTTTAAGGGTATTTG-GTACTTTTA
1 ATTTAGGATATGTTCATCCCATCTAAATCCTTTTTAGGTCTTTTAAGGGTA-TCGAGTACTTTTA
** * * * *
821418 TGTCAAAGGTATACCCTAAGGGCATTTTTGTAATTTTA-TTAGAGCCGAGTCCTAGGTCATTATC
65 CATCAAAGGTATACCCTAAGGGCATTTTAGT-ATTTTATTTA-AACCGAGTCCTAAGTCATCA-C
**
821482 T-GGTCTGCTTTTATACCGAAAGTGGGT
127 TGGGTCCACTTTTATACCGAAAGTGGGT
* *
821509 ATTTAGGATAGGTTCATCCCATCTAAATCCTTTTTAGGTCTTTTAGGGGTATCGAGTACTTTTAC
1 ATTTAGGATATGTTCATCCCATCTAAATCCTTTTTAGGTCTTTTAAGGGTATCGAGTACTTTTAC
** * * *
821574 ATTGAAGGTATCCCCTAGGGGCATTTTAGTATTTTATTTTAAACCGAGTCCTAAGTTATCACTGG
66 ATCAAAGGTATACCCTAAGGGCATTTTAGTATTTTA-TTTAAACCGAGTCCTAAGTCATCACTGG
* *
821639 GTCCACTTTTATGCCGAAGGTGGGT
130 GTCCACTTTTATACCGAAAGTGGGT
* * *
821664 AATTAGGATATGTTCATCCCTTCTATAAT-CTTTTTAAGTCTTTTAAG
1 ATTTAGGATATGTTCATCCCATCTA-AATCCTTTTTAGGTCTTTTAAG
821711 ATCTCTAGGT
Statistics
Matches: 172, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
154 10 0.06
155 156 0.91
156 6 0.03
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (154 bp):
ATTTAGGATATGTTCATCCCATCTAAATCCTTTTTAGGTCTTTTAAGGGTATCGAGTACTTTTAC
ATCAAAGGTATACCCTAAGGGCATTTTAGTATTTTATTTAAACCGAGTCCTAAGTCATCACTGGG
TCCACTTTTATACCGAAAGTGGGT
Found at i:824056 original size:29 final size:29
Alignment explanation
Indices: 824014--824071 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
824004 TTGATTAGGC
*
824014 TTTTGAAATCATTACTCTTACATCATTTA
1 TTTTGAAATCATTACCCTTACATCATTTA
*
824043 TTTTGAAATCATTACCCTTGCATCATTTA
1 TTTTGAAATCATTACCCTTACATCATTTA
824072 GGCAGGCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (29 bp):
TTTTGAAATCATTACCCTTACATCATTTA
Found at i:824493 original size:73 final size:71
Alignment explanation
Indices: 824264--824481 Score: 276
Period size: 73 Copynumber: 3.0 Consensus size: 71
824254 CATTATCCAC
* * * * ** *
824264 TTCAATCCTCAAAGAGTAGGATG-TTTTTTTTCTACAAAGCCCACACAAGCTAATGACATCATTT
1 TTCAATCCTCAAAGAGAAAGAAGTTTTTTTTTCTTCAAAGCCCACACAAGCTGGTGGCATCATTT
824328 ATCATTT
66 ATC-TTT
* *
824335 TTCAATCCTCAAAGAGAAAGAAGTTTTCTTTTTCTTCAAAGCCCACATAAGCTGGTAGCATCATT
1 TTCAATCCTCAAAGAGAAAGAAGTTTT-TTTTTCTTCAAAGCCCACACAAGCTGGTGGCATCATT
824400 TATCTTT
65 TATCTTT
* * * *
824407 TTCAATCCTCAAAGAGCAAGACGCCTTTTTTTTTCTTCAAAGCTCACACAAACTGGTGGCATCAT
1 TTCAATCCTCAAAGAGAAAGAAG--TTTTTTTTTCTTCAAAGCCCACACAAGCTGGTGGCATCAT
824472 TTATCTTT
64 TTATCTTT
824480 TT
1 TT
824482 TAGTTTTCAA
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
71 20 0.16
72 27 0.21
73 77 0.60
74 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (71 bp):
TTCAATCCTCAAAGAGAAAGAAGTTTTTTTTTCTTCAAAGCCCACACAAGCTGGTGGCATCATTT
ATCTTT
Found at i:824537 original size:45 final size:45
Alignment explanation
Indices: 824443--824537 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
824433 TTTTTTTTCT
* * * **
824443 TCAAAGCTCACACAAACTGGTGGCATCATTTATCTTTTTTAGTTT
1 TCAAAGCCCACACAAACTGGTGGCATCATTTATCTTTTTCAATCC
**
824488 TCAAAGCCCACACAAGTTGGTGGCATCATTTAT-TTTTTCCAATCC
1 TCAAAGCCCACACAAACTGGTGGCATCATTTATCTTTTT-CAATCC
824533 TCAAA
1 TCAAA
824538 AAGCAGGATG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 5 0.12
45 37 0.88
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (45 bp):
TCAAAGCCCACACAAACTGGTGGCATCATTTATCTTTTTCAATCC
Found at i:826199 original size:32 final size:34
Alignment explanation
Indices: 826140--826202 Score: 96
Period size: 32 Copynumber: 1.9 Consensus size: 34
826130 CAAGCCAATG
826140 TATCGATACAATTTGGTCATGTATCGATACATTA
1 TATCGATACAATTTGGTCATGTATCGATACATTA
826174 TATCGATAC-ATCTT-GT-ATGTATCGATACA
1 TATCGATACAAT-TTGGTCATGTATCGATACA
826203 AACAGTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 13 0.46
33 4 0.14
34 11 0.39
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (34 bp):
TATCGATACAATTTGGTCATGTATCGATACATTA
Found at i:826294 original size:20 final size:21
Alignment explanation
Indices: 826244--826296 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
826234 GCCAATCACC
*
826244 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
* *
826265 AGTATTGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
826285 TGTATCGATACA
1 TGTATCGATACA
826297 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 13 0.50
21 12 0.46
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:826879 original size:21 final size:22
Alignment explanation
Indices: 826841--826884 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
826831 TTTCCTTTTC
826841 TCTCCCCCTTAATCAAAAAAAT
1 TCTCCCCCTTAATCAAAAAAAT
*
826863 TCTCCCCCTTAAT-AAAACAAT
1 TCTCCCCCTTAATCAAAAAAAT
826884 T
1 T
826885 TCCTTTAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.30
Consensus pattern (22 bp):
TCTCCCCCTTAATCAAAAAAAT
Found at i:833280 original size:3 final size:3
Alignment explanation
Indices: 833272--833302 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
833262 TCTGAGTCAC
*
833272 CAT CAT CAT CAT CAT CAT CAT CTT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
833303 CTTGATGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:835018 original size:20 final size:21
Alignment explanation
Indices: 834971--835022 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
834961 GCCAATCACC
**
834971 TGTATCGATACATTTTTTACA
1 TGTATCGATACATTTGGTACA
*
834992 AGTATCGATACATTTGGT-CA
1 TGTATCGATACATTTGGTACA
835012 TGTATCGATAC
1 TGTATCGATAC
835023 CCTGTATCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTTGGTACA
Found at i:836229 original size:155 final size:155
Alignment explanation
Indices: 835941--836348 Score: 339
Period size: 155 Copynumber: 2.6 Consensus size: 155
835931 AAAGGATTTT
* * * * ** * * * *
835941 AAAA-GGGATGAACCTATCCTAAATATCTACCTTCAGTATAAAAGCAGATCCAATGACAACCTAA
1 AAAATGGGATGAACCTACCCTAAATACCCACCATCAACATAAAAGAAGACCCAAGGACAACCTAG
* * * * * * *
836005 GACTC-AGTTC-AAAAATTTA-CGAAAAT-GCCTCTATA-GGATATCTTTGACATAAAAGTACTT
66 GACTCGA-TTCTAAAAAATTATC-AAAATACCCT-TA-AGGGATATCCTCGA-GTAGAAGTGCTT
* * *
836065 AATACCCCTAAAAAACTTTAAAAAGGA-T-T
126 GATATCCCTAAAAAAC-TTAAAAAGGACTAC
** * * * * **
836094 TTAATCGGGATGAACCTACCCTAAATATCCATC-TTAGACATAAAAGAAGACTCGGGGACAACCT
1 AAAAT-GGGATGAACCTACCCTAAATACCCACCATCA-ACATAAAAGAAGACCCAAGGACAACCT
*
836158 AGGACTCGATTCTACAAAATTATCAAAATACCCTTAAGGGATATCCTCGAGTAGAAGTGCTTGAT
64 AGGACTCGATTCTAAAAAATTATCAAAATACCCTTAAGGGATATCCTCGAGTAGAAGTGCTTGAT
* **
836223 ATCCCTAGAGGACTTAAAAAGGACTAC
129 ATCCCTAAAAAACTTAAAAAGGACTAC
* * ** *
836250 AAAATGGGATGAACCTATCCTAAATACCCACCATCAACATTAAAGTGGACCCAATGACAACCTAG
1 AAAATGGGATGAACCTACCCTAAATACCCACCATCAACATAAAAGAAGACCCAAGGACAACCTAG
*
836315 GACTCGATTCTAAAAAATTATGAAAATACCCTTA
66 GACTCGATTCTAAAAAATTATCAAAATACCCTTA
836349 TGGGTACACC
Statistics
Matches: 200, Mismatches: 44, Indels: 20
0.76 0.17 0.08
Matches are distributed among these distances:
153 2 0.01
154 12 0.06
155 152 0.76
156 30 0.15
157 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (155 bp):
AAAATGGGATGAACCTACCCTAAATACCCACCATCAACATAAAAGAAGACCCAAGGACAACCTAG
GACTCGATTCTAAAAAATTATCAAAATACCCTTAAGGGATATCCTCGAGTAGAAGTGCTTGATAT
CCCTAAAAAACTTAAAAAGGACTAC
Found at i:837981 original size:11 final size:11
Alignment explanation
Indices: 837967--838025 Score: 52
Period size: 11 Copynumber: 5.6 Consensus size: 11
837957 TTTCCTAGTT
837967 TTTTTTCTTTC
1 TTTTTTCTTTC
*
837978 TTTTTTTTTTC
1 TTTTTTCTTTC
**
837989 TTCCTT-TTTC
1 TTTTTTCTTTC
*
837999 --TTTTCTCTC
1 TTTTTTCTTTC
*
838008 TTTTTTCCTTC
1 TTTTTTCTTTC
838019 TTTTTTC
1 TTTTTTC
838026 AGCTGAACTC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
8 2 0.05
9 3 0.08
10 4 0.11
11 28 0.76
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTTCTTTC
Found at i:837985 original size:15 final size:15
Alignment explanation
Indices: 837965--838013 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
837955 ATTTTCCTAG
837965 TTTTTTTTCTTTCTT
1 TTTTTTTTCTTTCTT
*
837980 TTTTTTTTCTTCCTT
1 TTTTTTTTCTTTCTT
* *
837995 TTTCTTTTCTCTCTT
1 TTTTTTTTCTTTCTT
838010 TTTT
1 TTTT
838014 CCTTCTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTTCTTTCTT
Found at i:839035 original size:19 final size:21
Alignment explanation
Indices: 838991--839042 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
838981 TACAAGCTAA
**
838991 TGTATCGATACATTTTTTTGG
1 TGTATCGATACATTACTTTGG
839012 TGTATCGATACA-TACTTT-G
1 TGTATCGATACATTACTTTGG
839031 TGTATCGATACA
1 TGTATCGATACA
839043 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATTACTTTGG
Found at i:841586 original size:13 final size:13
Alignment explanation
Indices: 841568--841606 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
841558 ATAATCCCCC
*
841568 TGTATCGATACAG
1 TGTATCGATACAA
841581 TGTATCGATACAA
1 TGTATCGATACAA
841594 TGTATCGATACAA
1 TGTATCGATACAA
841607 AGAAAGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:847750 original size:13 final size:13
Alignment explanation
Indices: 847732--847757 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
847722 ATTTTTTTGG
847732 TGTATCGATACAT
1 TGTATCGATACAT
847745 TGTATCGATACAT
1 TGTATCGATACAT
847758 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:847772 original size:32 final size:34
Alignment explanation
Indices: 847711--847775 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
847701 TACAAGCTAA
**
847711 TGTATCGATACATTTTTTTGGTGTATCGATACAT
1 TGTATCGATACATTACTTTGGTGTATCGATACAT
847745 TGTATCGATACA-TACTTT-GTGTATCGATACA
1 TGTATCGATACATTACTTTGGTGTATCGATACA
847776 AATTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
33 4 0.14
34 12 0.41
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (34 bp):
TGTATCGATACATTACTTTGGTGTATCGATACAT
Found at i:847880 original size:20 final size:20
Alignment explanation
Indices: 847829--847882 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
847819 ATCTTTTTCA
*
847829 TGTATCGATACATTGCAACG
1 TGTATCGATACTTTGCAACG
*
847849 TGTATCGATACTTTG-AATTG
1 TGTATCGATACTTTGCAA-CG
847869 TGTATCGATACTTT
1 TGTATCGATACTTT
847883 TAAGGGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.41
Consensus pattern (20 bp):
TGTATCGATACTTTGCAACG
Found at i:849414 original size:21 final size:21
Alignment explanation
Indices: 849367--849408 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
849357 AGAGAGCTTT
*
849367 AATTATTTTATCAAGGGGGAG
1 AATTATTTTATCAAGGGGAAG
*
849388 AATTATTTTATTAAGGGGAAG
1 AATTATTTTATCAAGGGGAAG
849409 TTTTATCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (21 bp):
AATTATTTTATCAAGGGGAAG
Found at i:850235 original size:13 final size:13
Alignment explanation
Indices: 850217--850241 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
850207 AGATTGCACA
850217 GTATCGATACATT
1 GTATCGATACATT
850230 GTATCGATACAT
1 GTATCGATACAT
850242 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:850254 original size:20 final size:21
Alignment explanation
Indices: 850229--850281 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
850219 ATCGATACAT
**
850229 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
850249 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
850270 TGTATCGATACA
1 TGTATCGATACA
850282 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Done.