Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2744988
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 17
Found at i:716474 original size:184 final size:183
Alignment explanation
Indices: 715723--716674 Score: 1080
Period size: 184 Copynumber: 5.1 Consensus size: 183
715713 CCTTTTAGCA
* * *
715723 CTTTAGTCCTCAAAGAGCAGGATGTCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCATT
1 CTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC-TT
* * *
715788 TAGTCCTCAAA-AAGCAAGACATCTTTTTTCTTTTTTTTTAAAGCCCACAC-ATGTTGGTGGCA-
64 TAGTCCTCAAAGAA-CAGGACGTC-TTTTTC----TTTTCAAAGCCCACACGA-GTTGGTGGCAC
* * * * * * *
715850 CCTTCCAATCCTCAAAGAGCAGGATG-CTTTCTC-CTTTTAAAGACCACACAAGTTCGTGGCAC
122 CCTT-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTC-TTCAAAGCCCACACAAGTTGGTGGCAC
* * * * * * *
715912 TTTTCAGTCTTCAAGGAGCAGGATGCCTTCTCCTTTT-AAAGCCCACACAAGTTAGTGGCACCTT
1 CTTT-AGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
* * * *
715976 TCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCATTTA
64 T-AGTCCTCAAAGAACAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
* ** * *
716041 GTCCTCAAAGAGTAGGACATCTTTTT-TCTTTCCAAAGCCTACACGAGTTGGTGGCACC
128 GTCCTCAAAGAGCAGGACGCCTTTTTCTC-TT-CAAAGCCCACACAAGTTGGTGGCA-C
* *
716099 CTTTAGTCCTTAAAGCGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
*
716164 AGTCTTCAAAGAACAGGACGTCTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
65 AGTCCTCAAAGAACAGGACGTC-TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * *
716229 TCCTCAAAGAGTAGGATGTCTTTTTTCTTTTCAAAGCCCACACAAGTTGCTGGCAC
129 TCCTCAAAGAGCAGGACG-CCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCAC
*
716285 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCTCACACGAGTTGGTGGCACCTTTA
1 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTA
* * * *
716350 GTCCACAAAGAATACGATGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
66 GTCCTCAAAGAACAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* *
716415 CTCAAAGAGCAGGACGCCTTTTTCTCTTCAAAACCCACACGAGTTGGTGGCACC
131 CTCAAAGAGCAGGACGCCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCA-C
* *
716469 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTCTTCAAAACCCACACGAGTTGGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
* * * * * **
716534 AGTCTTTAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACATAAGTTGGTGGCA-CCTTCTAG
65 AGTCCTCAAAGAACAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAG
* * * * *
716597 TCTTTAAAAAGCAAGACGCC-TTCTC-CTTCAAAGCCCACACAAGTTGGTGGCAC
129 TCCTCAAAGAGCAGGACGCCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCAC
*
716650 CTCTTAGTCCTCAAAGAGCAAGACG
1 CT-TTAGTCCTCAAAGAGCAGGACG
716675 TACTTCATTT
Statistics
Matches: 664, Mismatches: 80, Indels: 45
0.84 0.10 0.06
Matches are distributed among these distances:
181 3 0.00
182 46 0.07
183 39 0.06
184 167 0.25
185 125 0.19
186 86 0.13
187 109 0.16
188 16 0.02
189 48 0.07
190 25 0.04
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (183 bp):
CTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTA
GTCCTCAAAGAACAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
CTCAAAGAGCAGGACGCCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCAC
Found at i:716788 original size:105 final size:105
Alignment explanation
Indices: 716606--716825 Score: 361
Period size: 105 Copynumber: 2.1 Consensus size: 105
716596 GTCTTTAAAA
716606 AGCAAGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAA
1 AGCAAGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAA
*
716671 GACGTACTTCATTTCCTTCTTTTCCCTTTTGACCTCAAAG
66 GACGCACTTCATTTCCTTCTTTTCCCTTTTGACCTCAAAG
*
716711 AGCAAGACGCCTTCTCCTTCAAAGCCCATACAAGTTGGTGGCACCTCTTAGTCCTCAAA-AGGCA
1 AGCAAGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGA-GCA
* * * *
716775 GGATGCACTTCATTTCCTTCTTTTCCCTTTTGTCTTCAAAG
65 AGACGCACTTCATTTCCTTCTTTTCCCTTTTGACCTCAAAG
*
716816 AGCAGGACGC
1 AGCAAGACGC
716826 ACTTTATTTT
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
104 1 0.01
105 106 0.99
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (105 bp):
AGCAAGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAA
GACGCACTTCATTTCCTTCTTTTCCCTTTTGACCTCAAAG
Found at i:716907 original size:44 final size:41
Alignment explanation
Indices: 716811--716908 Score: 99
Period size: 41 Copynumber: 2.3 Consensus size: 41
716801 CTTTTGTCTT
* *
716811 CAAAGAGCAGGACGCACTTTATTTTCCTTTTTCTTTTATCCT
1 CAAA-AGCAGGACACACTTTATTTTCCTTTTTCTTTTATCCC
** *
716853 CAAGGGCAGGACACA-TTTCATTTTCCTTTTTTTTCATTATCCC
1 CAAAAGCAGGACACACTTT-ATTTTCCTTTTTCTT--TTATCCC
716896 CGAAAAGCAGGAC
1 C-AAAAGCAGGAC
716909 GTACTCTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
40 3 0.07
41 23 0.51
42 3 0.07
43 7 0.16
44 9 0.20
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (41 bp):
CAAAAGCAGGACACACTTTATTTTCCTTTTTCTTTTATCCC
Found at i:717075 original size:105 final size:105
Alignment explanation
Indices: 716962--717301 Score: 547
Period size: 105 Copynumber: 3.2 Consensus size: 105
716952 TTTCTTTCTT
* * *
716962 CTTTTGTCCTCAAAGAGTAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTAGTGGCACCTTCTA
1 CTTTTGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTA
* *
717027 GTCCTCAAAGAGCAGGACGTACTCCATTTCCTTCTTTTCC
66 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCC
* *
717067 CTTTTGTCCTCAAAAAGTAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTA
1 CTTTTGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTA
717132 GTCCTCAAA-AGGCAGGACGCACTTCATTTCCTTCTTTTCC
66 GTCCTCAAAGA-GCAGGACGCACTTCATTTCCTTCTTTTCC
*
717172 CTTTTGTCCTCAAAGAGCAAGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTA
1 CTTTTGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTA
** * *
717237 GTTTTCAAAGAGCAGGATGCACTTTATTTCCTTCTTTTCC
66 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCC
*
717277 CTTTTATCCTCAAAGAGCAGGATGC
1 CTTTTGTCCTCAAAGAGCAGGATGC
717302 ACTTTATTTT
Statistics
Matches: 219, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
104 1 0.00
105 217 0.99
106 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (105 bp):
CTTTTGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTA
GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCC
Found at i:717331 original size:43 final size:43
Alignment explanation
Indices: 717241--717758 Score: 386
Period size: 43 Copynumber: 11.7 Consensus size: 43
717231 CTCCTAGTTT
* * * *
717241 TCAAAGAGCAGGATGCACTTTATTTCCTTCTTTTCCCTTTTATCC
1 TCAAAGAGCAGGACGCACTTTATTT--TCCTTTTCCCCTTTGTCC
* *
717286 TCAAAGAGCAGGATGCACTTTATTTTCCTTTTCCCCATTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCC
** * *
717329 TCAAAGAGCAGGACATA-TTCCATTCCCTT-CTTTTCCCCTTTTATCC
1 TCAAAGAGCAGGACGCACTT-TATT---TTCCTTTTCCCC-TTTGTCC
* *
717375 TCAAAGAGCAGGACGCATTTTATTTTCCTTTTCTCCTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCC
* ** * ** *
717418 TCAAAGAGCAAGACATA-TTCCATTCCCTT-CTTTTCTCTTTTTATCC
1 TCAAAGAGCAGGACGCACTT-TATT---TTCCTTTTC-CCCTTTGTCC
* * **
717464 TCAAAGAGCAGGACGCACTTCATTTCCCTTTTTTGCCTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCC-TTTTCCCCTTTGTCC
* *
717508 TCAAAGAGCATGACGCACTTTATTTTCCTTTTCTCCTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCC
* * *
717551 TCAAAGAGTAGGACGCACTTTATTTTCCTTTTCTCTTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCC
* * * * **
717594 TCAAGGAGTAGG--GCACGTTCCATTTCCTTCTTTTCTCTTTTTGTCC
1 TCAAAGAGCAGGACGCAC-TT-TATTT--TCCTTTTC-CCCTTTGTCC
* * * * * *
717640 TCAAAAAGTAGGATGCACTTCATTTCCTTCTTTTCCCTTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTT--TCCTTTTCCCCTTTGTCC
* *
717685 TCAAAGAGCAGGACGCACTTTATTTTCCTTTT-TCTTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCC
* * *
717727 TCGAAGTGCAGGACGCA-TTTAGTTTTTCTTTT
1 TCAAAGAGCAGGACGCACTTTA-TTTTCCTTTT
717759 TTTCCTTCGT
Statistics
Matches: 393, Mismatches: 57, Indels: 49
0.79 0.11 0.10
Matches are distributed among these distances:
41 8 0.02
42 39 0.10
43 131 0.33
44 40 0.10
45 81 0.21
46 84 0.21
47 6 0.02
48 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.41
Consensus pattern (43 bp):
TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCC
Found at i:717397 original size:89 final size:89
Alignment explanation
Indices: 717241--717698 Score: 482
Period size: 89 Copynumber: 5.2 Consensus size: 89
717231 CTCCTAGTTT
* * *
717241 TCAAAGAGCAGGATGCAC-TT-TATTTCCTTCTTTTC-CCTTTTATCCTCAAAGAGCAGGATGCA
1 TCAAAGAGCAGGA--CACATTCCATTCCCTTCTTTTCTCCTTTTATCCTCAAAGAGCAGGACGCA
*
717303 CTTTATTTTCCTTTTCCCCATTGTCC
64 CTTTATTTTCCTTTTCCCCTTTGTCC
* * *
717329 TCAAAGAGCAGGACATATTCCATTCCCTTCTTTTCCCCTTTTATCCTCAAAGAGCAGGACGCATT
1 TCAAAGAGCAGGACACATTCCATTCCCTTCTTTTCTCCTTTTATCCTCAAAGAGCAGGACGCACT
*
717394 TTATTTTCCTTTTCTCCTTTGTCC
66 TTATTTTCCTTTTCCCCTTTGTCC
* * *
717418 TCAAAGAGCAAGACATATTCCATTCCCTTCTTTTCTCTTTTTATCCTCAAAGAGCAGGACGCACT
1 TCAAAGAGCAGGACACATTCCATTCCCTTCTTTTCTCCTTTTATCCTCAAAGAGCAGGACGCACT
* * **
717483 TCATTTCCCTTTTTTGCCTTTGTCC
66 TTATTTTCC-TTTTCCCCTTTGTCC
* * * * *
717508 TCAAAGAGCATGACGCACTT-TATT---TTCCTTTTCTCC-TTTGTCCTCAAAGAGTAGGACGCA
1 TCAAAGAGCAGGACACA-TTCCATTCCCTT-CTTTTCTCCTTTTATCCTCAAAGAGCAGGACGCA
* *
717568 CTTTATTTTCCTTTTCTCTTTTGTCC
64 CTTTATTTTCCTTTTCCCCTTTGTCC
* * * * * * * * * *
717594 TCAAGGAGTAGGGCACGTTCCATTTCCTTCTTTTCTCTTTTTGTCCTCAAAAAGTAGGATGCACT
1 TCAAAGAGCAGGACACATTCCATTCCCTTCTTTTCTCCTTTTATCCTCAAAGAGCAGGACGCACT
* * *
717659 TCATTTCCTTCTTTTCCCTTTTGTCC
66 TTATTT--TCCTTTTCCCCTTTGTCC
717685 TCAAAGAGCAGGAC
1 TCAAAGAGCAGGAC
717699 GCACTTTATT
Statistics
Matches: 314, Mismatches: 43, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
85 2 0.01
86 28 0.09
87 35 0.11
88 42 0.13
89 148 0.47
90 30 0.10
91 29 0.09
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (89 bp):
TCAAAGAGCAGGACACATTCCATTCCCTTCTTTTCTCCTTTTATCCTCAAAGAGCAGGACGCACT
TTATTTTCCTTTTCCCCTTTGTCC
Found at i:717575 original size:176 final size:174
Alignment explanation
Indices: 717266--717758 Score: 591
Period size: 176 Copynumber: 2.8 Consensus size: 174
717256 CACTTTATTT
* * * *
717266 CCTTCTTTTC-CCTTTTATCCTCAAAGAGCAGGATGCACTTTATTTTCC-TTTTCCCCATTGTCC
1 CCTTCTTTTCTCTTTTTATCCTCAAAGAGCAGGATGCACTTCA-TTTCCTTTTTTCCCTTTGTCC
** * * *
717329 TCAAAGAGCAGGACATA-TTCCATTCCCTT-CTTTTCCCCTTTTATCCTCAAAGAGCAGGACGCA
65 TCAAAGAGCAGGACGCACTT-TATT---TTCCTTTTCTCC-TTTGTCCTCAAAGAGCAGGACGCA
*
717392 TTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAAGACATATTCCATTC
125 -TTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAAGACACATTCCATTC
* *
717443 CCTTCTTTTCTCTTTTTATCCTCAAAGAGCAGGACGCACTTCATTTCCCTTTTTTGCCTTTGTCC
1 CCTTCTTTTCTCTTTTTATCCTCAAAGAGCAGGATGCACTTCATTT-CCTTTTTTCCCTTTGTCC
* *
717508 TCAAAGAGCATGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGACGCACTTTA
65 TCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCA-TTTA
* * * * * * *
717573 TTTTCCTTTTCTCTTTTGTCCTCAAGGAGTAGGGCACGTTCCATTT
129 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAAGACACATTCCATTC
* * *
717619 CCTTCTTTTCTCTTTTTGTCCTCAAAAAGTAGGATGCACTTCATTTCCTTCTTTTCCCTTTTGTC
1 CCTTCTTTTCTCTTTTTATCCTCAAAGAGCAGGATGCACTTCATTTCCTT-TTTTCCC-TTTGTC
* * *
717684 CTCAAAGAGCAGGACGCACTTTATTTTCCTTTT-TCTTTTGTCCTCGAAGTGCAGGACGCATTTA
64 CTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTA
*
717748 GTTTTTCTTTT
129 -TTTTCCTTTT
717759 TTTCCTTCGT
Statistics
Matches: 275, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
175 8 0.03
176 146 0.53
177 59 0.21
178 31 0.11
179 29 0.11
180 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.42
Consensus pattern (174 bp):
CCTTCTTTTCTCTTTTTATCCTCAAAGAGCAGGATGCACTTCATTTCCTTTTTTCCCTTTGTCCT
CAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTATT
TTCCTTTTCTCCTTTGTCCTCAAAGAGCAAGACACATTCCATTC
Found at i:717716 original size:89 final size:86
Alignment explanation
Indices: 717241--717758 Score: 428
Period size: 89 Copynumber: 5.9 Consensus size: 86
717231 CTCCTAGTTT
* * * * *
717241 TCAAAGAGCAGGATGCACTT-TATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGATGCACT
1 TCAAAGAGCAGGACGCACTTCCATTT--TCCTTTTCTCTTTTATCCTCAAAGAGCAGGACGCACT
*
717305 TTATTTTCCTTTTCCCCATTGTCC
64 TTATTTTCCTTTT-CCCTTTGTCC
** *
717329 TCAAAGAGCAGGACATA-TTCCATTCCCTT-CTTTTCCCCTTTTATCCTCAAAGAGCAGGACGCA
1 TCAAAGAGCAGGACGCACTTCCATT---TTCCTTTT-CTCTTTTATCCTCAAAGAGCAGGACGCA
*
717392 TTTTATTTTCCTTTTCTCCTTTGTCC
62 CTTTATTTTCCTTTTC-CCTTTGTCC
* **
717418 TCAAAGAGCAAGACATA-TTCCATTCCCTT-CTTTTCTCTTTTTATCCTCAAAGAGCAGGACGCA
1 TCAAAGAGCAGGACGCACTTCCATT---TTCCTTTTCTC-TTTTATCCTCAAAGAGCAGGACGCA
* * *
717481 CTTCATTTCCCTTTTTTGCCTTTGTCC
62 CTTTATTTTCC--TTTTCCCTTTGTCC
* * * * *
717508 TCAAAGAGCATGACGCACTT-TATTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGACGCACTTT
1 TCAAAGAGCAGGACGCACTTCCATTTTCCTTTTCTCTTTTATCCTCAAAGAGCAGGACGCACTTT
*
717572 ATTTTCCTTTTCTCTTTTGTCC
66 ATTTTCCTTTTC-CCTTTGTCC
* * * * * * *
717594 TCAAGGAGTAGG--GCACGTTCCATTTCCTTCTTTTCTCTTTTTGTCCTCAAAAAGTAGGATGCA
1 TCAAAGAGCAGGACGCAC-TTCCATTT--TCCTTTTCTC-TTTTATCCTCAAAGAGCAGGACGCA
* *
717657 CTTCATTTCCTTCTTTTCCCTTTTGTCC
62 CTTTATTT--TCCTTTTCCC-TTTGTCC
* * * *
717685 TCAAAGAGCAGGACGCACTT-TATTTTCCTTTT-TCTTTTGTCCTCGAAGTGCAGGACGCA-TTT
1 TCAAAGAGCAGGACGCACTTCCATTTTCCTTTTCTCTTTTATCCTCAAAGAGCAGGACGCACTTT
*
717747 AGTTTTTCTTTT
66 A-TTTTCCTTTT
717759 TTTCCTTCGT
Statistics
Matches: 362, Mismatches: 45, Indels: 49
0.79 0.10 0.11
Matches are distributed among these distances:
84 4 0.01
85 13 0.04
86 24 0.07
87 58 0.16
88 44 0.12
89 151 0.42
90 27 0.07
91 35 0.10
92 2 0.01
93 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.41
Consensus pattern (86 bp):
TCAAAGAGCAGGACGCACTTCCATTTTCCTTTTCTCTTTTATCCTCAAAGAGCAGGACGCACTTT
ATTTTCCTTTTCCCTTTGTCC
Found at i:717846 original size:41 final size:39
Alignment explanation
Indices: 717789--717890 Score: 100
Period size: 41 Copynumber: 2.5 Consensus size: 39
717779 TAGGACGTAC
* *
717789 TCTTTTTCACTTTGTCCTCAAGAAGC-AGAACGT-TTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAAG-ACCTATTT-C-AT
* *
717830 TCTTTCTTCCTTTGTCCACAAGGAGCAAGACCTATTTCAT
1 TCTTT-TTCCTTTGTCCTCAAGAAGCAAGACCTATTTCAT
717870 TCTTTTTTCCTTTGTCCTCAA
1 TC-TTTTTCCTTTGTCCTCAA
717891 AAAGTGGGAC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
40 17 0.33
41 27 0.52
42 8 0.15
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.44
Consensus pattern (39 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAAGACCTATTTCAT
Found at i:718492 original size:13 final size:13
Alignment explanation
Indices: 718476--718505 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
718466 ATACATTGTT
718476 CATTGTATCGATA
1 CATTGTATCGATA
718489 CATTGTATCGATA
1 CATTGTATCGATA
718502 CATT
1 CATT
718506 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:720971 original size:51 final size:51
Alignment explanation
Indices: 720910--721072 Score: 163
Period size: 51 Copynumber: 3.3 Consensus size: 51
720900 TCATTCATAT
* * *
720910 TTTTACTTCTAAAACACCAATTTTTTACAATCGAGGATACTCCAA-CCTCGG
1 TTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCT-AG
* * * *
720961 TTTTATTTCTAAAACATCAATTTTTCGCAATTGAGGATACTCGAACCCTAG
1 TTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCTAG
* * * * * * *
721012 TTTTATTTCCAAAACATCGATTTTCCACCATCGGGGATACTCTAACCCT-G
1 TTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCTAG
721062 --TTATTTCTAAA
1 TTTTATTTCTAAA
721073 GGGATACTCC
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
48 10 0.11
50 1 0.01
51 81 0.85
52 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.36
Consensus pattern (51 bp):
TTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCTAG
Found at i:721156 original size:51 final size:51
Alignment explanation
Indices: 721073--721189 Score: 180
Period size: 51 Copynumber: 2.3 Consensus size: 51
721063 TATTTCTAAA
* * *
721073 GGGATACTCCAACCCTGGTTTTGTTTTTAAAACATCAATTTTCCACAATCG
1 GGGATACTCCAACCCTGATTTTATTTTCAAAACATCAATTTTCCACAATCG
* * *
721124 GGGATACTCCAACTCTGATTTTATTTTCAAAACATCAATTTTTCATAATCG
1 GGGATACTCCAACCCTGATTTTATTTTCAAAACATCAATTTTCCACAATCG
721175 GGGATACTCCAACCC
1 GGGATACTCCAACCC
721190 CATTATTTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (51 bp):
GGGATACTCCAACCCTGATTTTATTTTCAAAACATCAATTTTCCACAATCG
Found at i:721217 original size:130 final size:131
Alignment explanation
Indices: 720944--721198 Score: 336
Period size: 130 Copynumber: 2.0 Consensus size: 131
720934 TTACAATCGA
* * * *
720944 GGATACTCCAA-CCTCGGTTTTATTTCTAAAACATCAATTTTTCGCAATTGAGGATACTCGAACC
1 GGATACTCCAACCCTCGGTTTTATTTCTAAAACATCAATTTTCCACAATCGAGGATACTCCAACC
* * * **
721008 CTAGTTTTATTTCCAAAACATCGATTTTCCACCATCGGGGATACTCTAACCCTGTTATTTCTAAA
66 CTAGTTTTATTTCCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTAAA
721073 G
131 G
* * * *
721074 GGATACTCCAACCCT-GGTTTTGTTTTTAAAACATCAATTTTCCACAATCGGGGATACTCCAACT
1 GGATACTCCAACCCTCGGTTTTATTTCTAAAACATCAATTTTCCACAATCGAGGATACTCCAACC
* * *
721138 CT-GATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTC
66 CTAG-TTTTATTTCCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTC
721199 ATCGGAGATA
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
129 1 0.01
130 103 0.96
131 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (131 bp):
GGATACTCCAACCCTCGGTTTTATTTCTAAAACATCAATTTTCCACAATCGAGGATACTCCAACC
CTAGTTTTATTTCCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTAAA
G
Found at i:721236 original size:28 final size:28
Alignment explanation
Indices: 721174--721247 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
721164 TTTCATAATC
* *
721174 GGGGATACTCCAACCCCATTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCATA
* * *
721202 GGAGATACTGCAACCCCGTTATTT-TTGA
1 GGGGATACTCCAACCCCGTTATTTCAT-A
721230 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
721248 ACTTTATTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCATA
Found at i:721306 original size:51 final size:51
Alignment explanation
Indices: 721230--721349 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 51
721220 TTATTTTTGA
* **
721230 GGGGATACTCCAACCCCGACTTTATTTCTGAAAC-ATTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGACCTTATTTCT-AAACTATCAATTTCTCACAATC
* *
721281 GGGGATACTCTAACCCC-AGCCTTATTTCTAAACTATCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGA-CCTTATTTCTAAACTATCAATTTCTCACAATC
*
721332 AGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
721350 TTGTTTTCGA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
50 5 0.08
51 54 0.92
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGACCTTATTTCTAAACTATCAATTTCTCACAATC
Found at i:721416 original size:79 final size:80
Alignment explanation
Indices: 721328--721512 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
721318 AATTTTTCAC
* ** *
721328 AATCAGGGATACTCCAACCCCGTTGTTTTC-GAGTTGATACTCCAACCCTGATTTTATTTTCAAA
1 AATCAGGGATACTCCAACCCCGTTGTTTTCTAAGGGGATACTCCAACCCCGATTTTATTTTCAAA
* *
721392 ATACCGA-TTACCTAT
66 ACACCAATTTACC-AT
** * * *
721407 AATCAGGGATACTCCAACCCTATT-ATTTCTAAGGGGATACTCCAACCCCGGTTTTATTTTCAGA
1 AATCAGGGATACTCCAACCCCGTTGTTTTCTAAGGGGATACTCCAACCCCGATTTTATTTTCAAA
*
721471 ACACCAATTTTCCAT
66 ACACCAATTTACCAT
*
721486 AATC-GAGGATACTCCAGCCCCGTTGTT
1 AATCAG-GGATACTCCAACCCCGTTGTT
721513 ATCTCCAAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
78 5 0.06
79 76 0.88
80 5 0.06
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (80 bp):
AATCAGGGATACTCCAACCCCGTTGTTTTCTAAGGGGATACTCCAACCCCGATTTTATTTTCAAA
ACACCAATTTACCAT
Found at i:723255 original size:20 final size:19
Alignment explanation
Indices: 723209--723264 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
723199 AAAACCCTTA
**
723209 AATGTATCGATACACAATTC
1 AATGTATCGATACA-TGTTC
*
723229 AAAGTATCGATACATGTTGC
1 AATGTATCGATACATGTT-C
723249 AATGTATCGATACATG
1 AATGTATCGATACATG
723265 AAAAAGATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATGTTC
Found at i:723308 original size:13 final size:13
Alignment explanation
Indices: 723290--723315 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
723280 TACAGCAAGT
723290 ATGTATCGATACA
1 ATGTATCGATACA
723303 ATGTATCGATACA
1 ATGTATCGATACA
723316 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:725565 original size:21 final size:21
Alignment explanation
Indices: 725532--725576 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
725522 TTGCAAGTGG
*
725532 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
725554 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
725574 AAA
1 AAA
725577 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:727402 original size:15 final size:15
Alignment explanation
Indices: 727382--727410 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
727372 AAAAATGTCC
727382 AAAATGAAGAAGCTT
1 AAAATGAAGAAGCTT
727397 AAAATGAAGAAGCT
1 AAAATGAAGAAGCT
727411 CCAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.21, T:0.17
Consensus pattern (15 bp):
AAAATGAAGAAGCTT
Found at i:729494 original size:20 final size:20
Alignment explanation
Indices: 729466--729504 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
729456 AATCTGGAAA
*
729466 TTCTATGTATTGATACATTT
1 TTCTATGTATCGATACATTT
*
729486 TTCTTTGTATCGATACATT
1 TTCTATGTATCGATACATT
729505 GTATCGATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (20 bp):
TTCTATGTATCGATACATTT
Found at i:729508 original size:13 final size:13
Alignment explanation
Indices: 729490--729528 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
729480 ACATTTTTCT
729490 TTGTATCGATACA
1 TTGTATCGATACA
729503 TTGTATCGATACA
1 TTGTATCGATACA
*
729516 CTGTATCGATACA
1 TTGTATCGATACA
729529 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:729673 original size:21 final size:21
Alignment explanation
Indices: 729649--729695 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
729639 AAATCTTTTG
729649 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
729670 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
729690 CAAAAT
1 CAAAAT
729696 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:729692 original size:20 final size:19
Alignment explanation
Indices: 729651--729693 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
729641 ATCTTTTGCA
729651 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
729671 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
729691 AAA
1 AAA
729694 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:732095 original size:13 final size:13
Alignment explanation
Indices: 732077--732102 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
732067 TACAGCAAGT
732077 ATGTATCGATACA
1 ATGTATCGATACA
732090 ATGTATCGATACA
1 ATGTATCGATACA
732103 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:734868 original size:14 final size:13
Alignment explanation
Indices: 734827--734879 Score: 53
Period size: 10 Copynumber: 4.3 Consensus size: 13
734817 ATAAAACTAG
734827 TTAAAAA-TAAAA
1 TTAAAAATTAAAA
734839 -T-AAAA-TAAAA
1 TTAAAAATTAAAA
734849 -TAAAAATTCAAAA
1 TTAAAAATT-AAAA
734862 TTAAAAAATTAAAA
1 TT-AAAAATTAAAA
734876 TTAA
1 TTAA
734880 TAATCATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 10 0.28
11 5 0.14
12 1 0.03
13 6 0.17
14 7 0.19
15 7 0.19
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (13 bp):
TTAAAAATTAAAA
Found at i:740257 original size:58 final size:57
Alignment explanation
Indices: 740167--740337 Score: 171
Period size: 61 Copynumber: 2.9 Consensus size: 57
740157 ATGAGAAGAG
* **
740167 TGATAAAGGTGTCAATATGCTGATTCCGGGCCAACGATATTGGGTTTAAAGAGAAAAA
1 TGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGG-TTAAAGAGAAAAA
* * *
740225 TGATAAAGGTGCCAATATGCTAATTCAAGGCCAACGATAGTGAGCGTAAAGATGAGAAAAA
1 TGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTG-G-GTTAA-A-GAGAAAAA
* * * ** **
740286 TGATAACGGTACCGATATGCTGATTCAAGATCAGTGATATTGGGCTTAAAGA
1 TGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGG-TTAAAGA
740338 TATGAATAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
58 39 0.42
59 6 0.07
60 6 0.07
61 41 0.45
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (57 bp):
TGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGGTTAAAGAGAAAAA
Found at i:740429 original size:52 final size:52
Alignment explanation
Indices: 740352--740700 Score: 219
Period size: 52 Copynumber: 6.5 Consensus size: 52
740342 AATAATGCAG
* * * *
740352 TGTGTTGATTCACGGCTAGCAACATTAGACTTGAAAATGAGAAGAATGCCAA
1 TGTGTTGATTCAAGGCCAGCGACATTGGACTTGAAAATGAGAAGAATGCCAA
* * * *
740404 TGTGTTGATTCAAGGCCAGCGACATTGGGCTTAGGAATATTA-AAG-ATGCTAA
1 TGTGTTGATTCAAGGCCAGCGACATTGGACTT--GAAAATGAGAAGAATGCCAA
* * * * * * *
740456 TATGCTGATTCAAGGCTAGCGATATTGGGCTT-AAAGATGACAA-AGGTGCCAA
1 TGTGTTGATTCAAGGCCAGCGACATTGGACTTGAAA-ATGAGAAGA-ATGCCAA
* * *
740508 TGTGTTGATTCAAGGCCAGCAACATTGGACTTGAAGATGAGAAGAAGGATGAAGGTGCTAA
1 TGTGTTGATTCAAGGCCAGCGACATTGGACTTGAAAAT--G-AG-A--A-GAA--TGCCAA
* * * * * *
740569 TATGCTGATTCAAGGCTAGTGACATTGGACTT-AAAGATGACAA-AGGTGCCAA
1 TGTGTTGATTCAAGGCCAGCGACATTGGACTTGAAA-ATGAGAAGA-ATGCCAA
* * * * *
740621 TGTGTTGATTTAAGGCCAACAACATTAGACTTGAAGAA--AGAAAAAGTGCCAA
1 TGTGTTGATTCAAGGCCAGCGACATTGGACTTGAA-AATGAGAAGAA-TGCCAA
*
740673 TGTGTTGATTCAAGGCCAACGACATTGG
1 TGTGTTGATTCAAGGCCAGCGACATTGG
740701 GCTTAGAAGT
Statistics
Matches: 226, Mismatches: 48, Indels: 46
0.71 0.15 0.14
Matches are distributed among these distances:
49 2 0.01
50 3 0.01
51 5 0.02
52 155 0.69
53 9 0.04
54 8 0.04
55 2 0.01
56 1 0.00
57 1 0.00
58 2 0.01
59 1 0.00
60 3 0.01
61 34 0.15
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.25
Consensus pattern (52 bp):
TGTGTTGATTCAAGGCCAGCGACATTGGACTTGAAAATGAGAAGAATGCCAA
Found at i:740652 original size:113 final size:113
Alignment explanation
Indices: 740450--740657 Score: 362
Period size: 113 Copynumber: 1.8 Consensus size: 113
740440 ATATTAAAGA
* *
740450 TGCTAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGATGACAAAGGTGCCAATGTGTTG
1 TGCTAATATGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATGTGTTG
* *
740515 ATTCAAGGCCAGCAACATTGGACTTGAAGATGAGAAGAAGGATGAAGG
66 ATTCAAGGCCAACAACATTAGACTTGAAGATGAGAAGAAGGATGAAGG
*
740563 TGCTAATATGCTGATTCAAGGCTAGTGACATTGGACTTAAAGATGACAAAGGTGCCAATGTGTTG
1 TGCTAATATGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATGTGTTG
*
740628 ATTTAAGGCCAACAACATTAGACTTGAAGA
66 ATTCAAGGCCAACAACATTAGACTTGAAGA
740658 AAGAAAAAGT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 89 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.25
Consensus pattern (113 bp):
TGCTAATATGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATGTGTTG
ATTCAAGGCCAACAACATTAGACTTGAAGATGAGAAGAAGGATGAAGG
Found at i:740733 original size:31 final size:32
Alignment explanation
Indices: 740698--740805 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 32
740688 CCAACGACAT
*
740698 TGGGC-TTAGAAGTA-GATGCCACTGACTTGTG
1 TGGGCTTTAGAAG-AGGTTGCCACTGACTTGTG
* **
740729 TGGGCTTT-TAAGAAGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAG-AGGTTGCCACTGACTTGTG
* * *
740761 TGGGCTTTAAAAGAGGTTGTCACTGACTTGTA
1 TGGGCTTTAGAAGAGGTTGCCACTGACTTGTG
740793 TGGGCTTTAGAAG
1 TGGGCTTTAGAAG
740806 GGGAAGGTGC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
31 9 0.14
32 51 0.81
33 3 0.05
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (32 bp):
TGGGCTTTAGAAGAGGTTGCCACTGACTTGTG
Found at i:740801 original size:32 final size:33
Alignment explanation
Indices: 740714--740801 Score: 117
Period size: 32 Copynumber: 2.7 Consensus size: 33
740704 TAGAAGTAGA
*
740714 TGCCACTGACTTGTGTGGGCTTT-TAAGAAGGT
1 TGCCACTGACTTGTGTGGGCTTTAAAAGAAGGT
**
740746 TGCCACCAACTTGTGTGGGCTTTAAAAG-AGGT
1 TGCCACTGACTTGTGTGGGCTTTAAAAGAAGGT
* *
740778 TGTCACTGACTTGTATGGGCTTTA
1 TGCCACTGACTTGTGTGGGCTTTA
740802 GAAGGGGAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 45 0.94
33 3 0.06
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.34
Consensus pattern (33 bp):
TGCCACTGACTTGTGTGGGCTTTAAAAGAAGGT
Found at i:741075 original size:53 final size:52
Alignment explanation
Indices: 740998--741100 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 52
740988 CAAATTAAAT
* * *
740998 TTAAAGATGATGAAGGTACCAACGTGCGGATTCGAAGCT-AGCAACATTGGTC
1 TTAAAGATGAAGAAGGTACCAACGTGCGGA-TCCAAGATCAGCAACATTGGTC
*
741050 TTAAAGATGAAGAAAGGTGA-CAACGTGCTGATCCAAGATCAGCAACATTGG
1 TTAAAGATGAAG-AAGGT-ACCAACGTGCGGATCCAAGATCAGCAACATTGG
741101 AATGAAAGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
52 17 0.39
53 26 0.59
54 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (52 bp):
TTAAAGATGAAGAAGGTACCAACGTGCGGATCCAAGATCAGCAACATTGGTC
Found at i:742362 original size:23 final size:22
Alignment explanation
Indices: 742336--742405 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 22
742326 CTTTTTCTTT
742336 TTTTTTATTTTTTTGTTGT-TTTC
1 TTTTTT-TTTTTTTGTT-TATTTC
*
742359 TTTTGTTTTGTTTTGTTTATTTC
1 TTTT-TTTTTTTTTGTTTATTTC
* *
742382 TTTATTTTTTTAT-TTTATTT-
1 TTTTTTTTTTTTTGTTTATTTC
742402 TTTT
1 TTTT
742406 ACGAAGAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.08
21 7 0.17
22 8 0.20
23 20 0.50
24 2 0.05
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (22 bp):
TTTTTTTTTTTTTGTTTATTTC
Found at i:742406 original size:8 final size:8
Alignment explanation
Indices: 742335--742397 Score: 56
Period size: 8 Copynumber: 7.5 Consensus size: 8
742325 ACTTTTTCTT
742335 TTTTTTTA
1 TTTTTTTA
*
742343 TTTTTTTG
1 TTTTTTTA
742351 TTGTTTTCT-
1 TT-TTTT-TA
*
742360 TTTGTTTTG
1 TTT-TTTTA
742369 TTTTGTTTA
1 TTTT-TTTA
*
742378 TTTCTTTA
1 TTTTTTTA
742386 TTTTTTTA
1 TTTTTTTA
742394 TTTT
1 TTTT
742398 ATTTTTTTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
8 27 0.59
9 18 0.39
10 1 0.02
ACGTcount: A:0.06, C:0.03, G:0.08, T:0.83
Consensus pattern (8 bp):
TTTTTTTA
Found at i:742406 original size:13 final size:13
Alignment explanation
Indices: 742333--742406 Score: 53
Period size: 13 Copynumber: 5.5 Consensus size: 13
742323 AGACTTTTTC
742333 TTTTT-TTTTATT
1 TTTTTATTTTATT
*
742345 TTTTTGTTGTT-TT
1 TTTTTATT-TTATT
* * *
742358 CTTTTGTTTTGTT
1 TTTTTATTTTATT
742371 TTGTTTATTTCTTTATT
1 TT-TTTA--T-TTTATT
742388 TTTTTATTTTATT
1 TTTTTATTTTATT
742401 TTTTTA
1 TTTTTA
742407 CGAAGAATGC
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
12 7 0.14
13 26 0.51
14 6 0.12
16 5 0.10
17 7 0.14
ACGTcount: A:0.08, C:0.03, G:0.07, T:0.82
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:743449 original size:20 final size:20
Alignment explanation
Indices: 743424--743487 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
743414 GTTACAAGCT
743424 ATGTATCGATACATTTCTTC
1 ATGTATCGATACATTTCTTC
743444 ATGTATCGATACA-------
1 ATGTATCGATACATTTCTTC
743457 ATGTATCGATACATTTCTTC
1 ATGTATCGATACATTTCTTC
743477 ATGTATCGATA
1 ATGTATCGATA
743488 AAATGTATCG
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 13 0.35
20 24 0.65
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTCTTC
Found at i:743462 original size:13 final size:13
Alignment explanation
Indices: 743444--743507 Score: 59
Period size: 13 Copynumber: 5.4 Consensus size: 13
743434 ACATTTCTTC
743444 ATGTATCGATACA
1 ATGTATCGATACA
743457 ATGTATCGATAC-
1 ATGTATCGATACA
*
743469 AT-T-TC--TTC-
1 ATGTATCGATACA
*
743477 ATGTATCGATAAA
1 ATGTATCGATACA
743490 ATGTATCGATACA
1 ATGTATCGATACA
*
743503 TTGTA
1 ATGTA
743508 CCATAGGGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
8 4 0.10
9 1 0.02
10 4 0.10
11 1 0.02
12 3 0.07
13 28 0.68
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:743462 original size:33 final size:33
Alignment explanation
Indices: 743424--743504 Score: 153
Period size: 33 Copynumber: 2.5 Consensus size: 33
743414 GTTACAAGCT
*
743424 ATGTATCGATACATTTCTTCATGTATCGATACA
1 ATGTATCGATACATTTCTTCATGTATCGATAAA
743457 ATGTATCGATACATTTCTTCATGTATCGATAAA
1 ATGTATCGATACATTTCTTCATGTATCGATAAA
743490 ATGTATCGATACATT
1 ATGTATCGATACATT
743505 GTACCATAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (33 bp):
ATGTATCGATACATTTCTTCATGTATCGATAAA
Found at i:743558 original size:21 final size:21
Alignment explanation
Indices: 743532--743587 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 21
743522 CTACCAGTTT
* **
743532 CATGTATCGACACAATTTGTC
1 CATGTATCGATACAATTTGAA
743553 CATGTATCGATAC-A-TTGAA
1 CATGTATCGATACAATTTGAA
743572 CATGTATCGATACAAT
1 CATGTATCGATACAAT
743588 GTATCGATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 16 0.53
20 2 0.07
21 12 0.40
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (21 bp):
CATGTATCGATACAATTTGAA
Found at i:743591 original size:13 final size:13
Alignment explanation
Indices: 743573--743598 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
743563 TACATTGAAC
743573 ATGTATCGATACA
1 ATGTATCGATACA
743586 ATGTATCGATACA
1 ATGTATCGATACA
743599 TCTGGGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:744177 original size:37 final size:37
Alignment explanation
Indices: 744138--744209 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
744128 TTCTCCCCTT
*
744138 AAAAAATATTCTCCCCCTTAAACAATTATCTTCTCTTA
1 AAAAAACATT-TCCCCCTTAAACAATTATCTTCTCTTA
**
744176 AAAAAACATTTCCCCCTTAAATGATTATCTTCTC
1 AAAAAACATTTCCCCCTTAAACAATTATCTTCTC
744210 CCCTTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 22 0.71
38 9 0.29
ACGTcount: A:0.36, C:0.26, G:0.01, T:0.36
Consensus pattern (37 bp):
AAAAAACATTTCCCCCTTAAACAATTATCTTCTCTTA
Found at i:746074 original size:13 final size:13
Alignment explanation
Indices: 746056--746093 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
746046 ATGTCAAATA
746056 GTATCGATACAAT
1 GTATCGATACAAT
746069 GTATCGATACAAT
1 GTATCGATACAAT
746082 GTATCGATACAA
1 GTATCGATACAA
746094 GGAATGTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:752319 original size:21 final size:21
Alignment explanation
Indices: 752293--752348 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 21
752283 CTGCCAGTTT
**
752293 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAATTTGAA
*
752314 CATGTATCAATAC-A-TTGAA
1 CATGTATCGATACAATTTGAA
752333 CATGTATCGATACAAT
1 CATGTATCGATACAAT
752349 GTATCGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 15 0.52
20 2 0.07
21 12 0.41
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATTTGAA
Found at i:752352 original size:13 final size:13
Alignment explanation
Indices: 752334--752360 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
752324 TACATTGAAC
752334 ATGTATCGATACA
1 ATGTATCGATACA
752347 ATGTATCGATACA
1 ATGTATCGATACA
752360 A
1 A
752361 AGTAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:757823 original size:13 final size:13
Alignment explanation
Indices: 757805--757831 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
757795 ACAATATGAT
757805 TTGTATCGATACA
1 TTGTATCGATACA
757818 TTGTATCGATACA
1 TTGTATCGATACA
757831 T
1 T
757832 GCTTATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:757841 original size:19 final size:20
Alignment explanation
Indices: 757817--757871 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 20
757807 GTATCGATAC
*
757817 ATTGTATCGATACATGCT-T
1 ATTGTATCGATACATGCTCA
*
757836 ATTGTATCGATACATACTCA
1 ATTGTATCGATACATGCTCA
757856 ATTGTATCGATACATG
1 ATTGTATCGATACATG
757872 AGACTGGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTGTATCGATACATGCTCA
Found at i:764458 original size:41 final size:43
Alignment explanation
Indices: 764380--764467 Score: 144
Period size: 41 Copynumber: 2.1 Consensus size: 43
764370 ATACATTGTT
* *
764380 CATTGTATCGATACATTCTAGGTTTTACCCAGATGTATCGATA
1 CATTGTATCGATACATTCTAGGGTTTACCCAAATGTATCGATA
764423 CATTGTATC-ATACATTCT-GGGTTTACCCAAATGTATCGATA
1 CATTGTATCGATACATTCTAGGGTTTACCCAAATGTATCGATA
764464 CATT
1 CATT
764468 CAGGCATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 25 0.58
42 9 0.21
43 9 0.21
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (43 bp):
CATTGTATCGATACATTCTAGGGTTTACCCAAATGTATCGATA
Found at i:766855 original size:50 final size:51
Alignment explanation
Indices: 766749--766856 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 51
766739 AAACTTCTAG
* * * * *
766749 ATTTTTTCATCTCGGGGATACTCTAACCCCGGCTTTATTTCTAAAATATTG
1 ATTTTTTCATCTCGGGAATACTATAACCCCGGCTTTATTTCCAAAACATTC
* * *
766800 A-TTTTTCATCTTGGGAATACTATAGCCCCGGTTTTATTTCCAAAACA-TC
1 ATTTTTTCATCTCGGGAATACTATAACCCCGGCTTTATTTCCAAAACATTC
766849 ATTTTTTC
1 ATTTTTTC
766857 GTAATCGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
49 2 0.04
50 45 0.94
51 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (51 bp):
ATTTTTTCATCTCGGGAATACTATAACCCCGGCTTTATTTCCAAAACATTC
Found at i:766941 original size:79 final size:77
Alignment explanation
Indices: 766858--767109 Score: 258
Period size: 79 Copynumber: 3.2 Consensus size: 77
766848 CATTTTTTCG
766858 TAATCGAGGATACTCCAATCCCGTTATTTTTGAAAGGATACTCCAACCCTGACTTTTTTTCTAAA
1 TAATCGAGGATACTCCAA-CCCGTTATTTTTG-AAGGATACTCCAACCCTGACTTTTTTTCTAAA
* *
766923 ATATTGATTTTTCA
64 ATATCGATTTTCCA
* * * ** *
766937 TAATCGCGGATACTCCAACCTCGTTATTTTGGTG-GGGATACTCCAA-CCTCAGCCCTATTTCTA
1 TAATCGAGGATACTCCAACC-CGTTATTTT--TGAAGGATACTCCAACCCTGA-CTTTTTTTCTA
**
767000 AAGCATCGATTTTCCA
62 AAATATCGATTTTCCA
* * * *
767016 CAATCGGGGATACTCCAACCCCGTTATTTTTGAAGAGATACTCCAACCCCGATTTTATTTTC-AA
1 TAATCGAGGATACTCCAA-CCCGTTATTTTTGAAG-GATACTCCAACCCTGACTTT-TTTTCTAA
*
767080 AATGTCGATTTTCCA
63 AATATCGATTTTCCA
*
767095 TAATCAAGGATACTC
1 TAATCGAGGATACTC
767110 TAGCCCCGTT
Statistics
Matches: 139, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
77 2 0.01
78 7 0.05
79 119 0.86
80 9 0.06
81 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (77 bp):
TAATCGAGGATACTCCAACCCGTTATTTTTGAAGGATACTCCAACCCTGACTTTTTTTCTAAAAT
ATCGATTTTCCA
Found at i:770536 original size:51 final size:52
Alignment explanation
Indices: 770423--770546 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 52
770413 TTAAGTCCTA
** * * * *
770423 GACTTAAAGATAAGAAGGGTGCCAATGTGCTGATTCTAGGCTAGCTATATGG
1 GACTTAAAGATAAGAAAAGTGCCAATGTACTGATTCGAGGCCAGCGATATGG
* *
770475 GACTTAAAGATGAGAAAAGTGCCAA-GTACTGATTCGAGGCCAGCGATATTG
1 GACTTAAAGATAAGAAAAGTGCCAATGTACTGATTCGAGGCCAGCGATATGG
* *
770526 GACTTTAAGATAACAAAAGTG
1 GACTTAAAGATAAGAAAAGTG
770547 GTGTTTTAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
51 39 0.64
52 22 0.36
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (52 bp):
GACTTAAAGATAAGAAAAGTGCCAATGTACTGATTCGAGGCCAGCGATATGG
Found at i:770692 original size:31 final size:31
Alignment explanation
Indices: 770555--770901 Score: 453
Period size: 31 Copynumber: 11.0 Consensus size: 31
770545 TGGTGTTTTA
* * * *
770555 AAAAAGGTTGCTAACGACTTGCGTGGGCTTTT
1 AAAAGGGTTGCCACCGACTTGTGTGGGC-TTT
770587 AAAAGGGTTGCCACCGATGCTTGTGTGGGCTTT
1 AAAAGGGTTGCCACCGA--CTTGTGTGGGCTTT
* * *
770620 GAAAAGAGTTACCACCGACTTATGTGGGCTTT
1 -AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
770652 GCAAAGGGTTGCCACCGACTTGTGTGGGCTTT
1 -AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
770684 AAAAGGGTTACCATCGACTTGTATGGGCTTT
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
770715 AAAAGGGTTGCCACTGACTTGTGTGGGCTTT
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
770746 GAAAGGAGTTGCCACCGACTTGTGTGGGCTTT
1 AAAAGG-GTTGCCACCGACTTGTGTGGGCTTT
**
770778 GAAAAGGGTTGCCACTAACTTGTGTGGGCTTT
1 -AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
770810 AAAAGGGTTGCCACCGACTTGTATGGGCTTT
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
770841 AAAATGGTTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
770872 AAAAGGG-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
770902 GACTCAAGTG
Statistics
Matches: 279, Mismatches: 31, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
30 23 0.08
31 121 0.43
32 102 0.37
33 8 0.03
34 25 0.09
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (31 bp):
AAAAGGGTTGCCACCGACTTGTGTGGGCTTT
Found at i:770784 original size:126 final size:126
Alignment explanation
Indices: 770569--770903 Score: 494
Period size: 126 Copynumber: 2.7 Consensus size: 126
770559 AGGTTGCTAA
** * *
770569 CGACTTGCGTGGGCTTTTAAAAGGGTTGCCACCGATGCTTGTGTGGGCTTTGAAAAGAGTTACCA
1 CGACTTGTATGGGC-TTTAAAAGGGTTGCCACCGA--CTTGTGTGGGCTTTGAAAGGAGTTGCCA
* * * *
770634 CCGACTTATGTGGGCTTTGCAAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAAGGGTTACCAT
63 CCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTAAAAGGGTTACCAC
*
770698 CGACTTGTATGGGCTTTAAAAGGGTTGCCACTGACTTGTGTGGGCTTTGAAAGGAGTTGCCACCG
1 CGACTTGTATGGGCTTTAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGAGTTGCCACCG
* *
770763 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTAACTTGTGTGGGCTTTAAAAGGGTTGCCAC
66 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTAAAAGGGTTACCAC
* * * *
770824 CGACTTGTATGGGCTTTAAAATGGTTGCCACCAACTTGTGTGGGCTTTAAAAGG-G-TGCCACCA
1 CGACTTGTATGGGCTTTAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGAGTTGCCACCG
770887 ACTTGTGTGGGCTTTGA
66 ACTTGTGTGGGCTTTGA
770904 CTCAAGTGCT
Statistics
Matches: 190, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
124 24 0.13
125 1 0.01
126 134 0.71
128 19 0.10
129 12 0.06
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (126 bp):
CGACTTGTATGGGCTTTAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGAGTTGCCACCG
ACTTGTGTGGGCTTTGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTAAAAGGGTTACCAC
Found at i:771037 original size:31 final size:31
Alignment explanation
Indices: 770998--771087 Score: 92
Period size: 31 Copynumber: 2.9 Consensus size: 31
770988 AAGACTAAAC
770998 GAGTGCCACCAACTTGTGTGGGCTTTAACTCA
1 GAGTGCCACCAACTTGTGTGGGCTTTAACT-A
* ** * *
771030 -AGTGCCACCAGCTTGTACGGGTTTTAGCTA
1 GAGTGCCACCAACTTGTGTGGGCTTTAACTA
* **
771060 GGGTGCCACCAACTCATGTGGGCTTTAA
1 GAGTGCCACCAACTTGTGTGGGCTTTAA
771088 AAGAACAAGG
Statistics
Matches: 44, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
30 1 0.02
31 43 0.98
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (31 bp):
GAGTGCCACCAACTTGTGTGGGCTTTAACTA
Found at i:771127 original size:62 final size:62
Alignment explanation
Indices: 771061--771755 Score: 689
Period size: 62 Copynumber: 11.5 Consensus size: 62
771051 TTTTAGCTAG
** * * * *
771061 GGTGCCACCAACTCATGTGGGCTTTAAAAGAACAAGGTGTTCTGCTCTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
*
771123 GGTGCCACCAACTTGTGTGAGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * ** *
771181 GGTGCCACCAACTTGTATTGGCTTT---A-AAAAAGATGTCCTACTCTTTGAGGACTAAATA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * * * ** *
771239 AGTGCCACAAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCATGTTCTTTAAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * * * * * **
771301 GGTTCTATCAACTTGTGTGGGTTTTAAAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAATG
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
*** * * * * * * *
771363 GGTGCCACCAACTTGTGTGGGCTTT----GACTTAGGTGCCGCCAGCT-TGTGCAAG-CTTTAGC
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTC-CTA-CTCTTTG-AGGAC-TAAAC
771422 TA
62 -A
* * * * *
771424 GGGTGCCACAAACTCGTGTAGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAACG
1 -GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
*
771487 GGTGCCACCAACTTGTGTGAGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * *
771545 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGT-CTTCTCTTTGAAGACTGAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* ** * **
771606 GGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGGCGTCCTGTTCTTTAAGGACTAAATG
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* *
771668 GGTGCCACCAACTTGTGTGGGCTTT-AAA-AAAAA--TGTCCTACTTTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
771726 GGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAG
771756 GGGTAACCAC
Statistics
Matches: 515, Mismatches: 95, Indels: 48
0.78 0.14 0.07
Matches are distributed among these distances:
58 206 0.40
59 10 0.02
60 11 0.02
61 62 0.12
62 207 0.40
64 7 0.01
65 6 0.01
66 6 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (62 bp):
GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
Found at i:771184 original size:58 final size:58
Alignment explanation
Indices: 771061--771754 Score: 593
Period size: 58 Copynumber: 11.5 Consensus size: 58
771051 TTTTAGCTAG
** * * *
771061 GGTGCCACCAACTCATGTGGGCTTTAAAAGAACAAGGTGTTCTGCTCTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTT--AA-AA-AAGGCGTCCTACTCTTTGAGGACTAAACA
*
771123 GGTGCCACCAACTTGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * ** *
771181 GGTGCCACCAACTTGTATTGGCTTTAAAAAAGATGTCCTACTCTTTGAGGACTAAATA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * * * ** *
771239 AGTGCCACAAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCATGTTCTTTAAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * * * * * **
771301 GGTTCTATCAACTTGTGTGGGTTTTAAAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAATG
1 GGTGCCACCAACTTGTGTGGGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* *** * * * * * * *
771363 GGTGCCACCAACTTGTGTGGGCTTTGACTTAGGTGCCGCCAGCT-TGTGCAAG-CTTTAGCTA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAGGCGTC-CTA-CTCTTTG-AGGAC-TAAAC-A
* * * * *
771424 GGGTGCCACAAACTCGTGTAGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAACG
1 -GGTGCCACCAACTTGTGTGGGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
*
771487 GGTGCCACCAACTTGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* * *
771545 GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGT-CTTCTCTTTGAAGACTGAACA
1 GGTGCCACCAACTTGTGTGGGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
* ** * **
771606 GGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGGCGTCCTGTTCTTTAAGGACTAAATG
1 GGTGCCACCAACTTGTGTGGGCTTT---A-AAAAAGGCGTCCTACTCTTTGAGGACTAAACA
*** *
771668 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGTCCTACTTTTTGAGGACTAAACA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
771726 GGTGCCACCAACTTGTGTGGGCTTTAAAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAA
771755 GGGGTAACCA
Statistics
Matches: 513, Mismatches: 98, Indels: 46
0.78 0.15 0.07
Matches are distributed among these distances:
58 212 0.41
59 9 0.02
60 8 0.02
61 59 0.12
62 207 0.40
64 7 0.01
65 6 0.01
66 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (58 bp):
GGTGCCACCAACTTGTGTGGGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACA
Found at i:771379 original size:364 final size:362
Alignment explanation
Indices: 770939--771752 Score: 1119
Period size: 364 Copynumber: 2.2 Consensus size: 362
770929 CTTTAGCTAG
** * * * * *
770939 GGTGCCACCAACTCATGTGGGCTTTAAAAAAAAGGCATTCTACTCTTTAAAGACTAAACGAGTGC
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATG--TCCTACTCTTTGAGGACTAAACGGGTGC
** *
771004 CACCAACTTGTGTGGGCTTTAACTCAAGTGCCACCAGCTTGTACGGGTTTTAGCTAGGGTGCCAC
64 CACCAACTTGTGTGGGCTTTAACTCAAGTGCCACCAGCTTGTACAAGCTTTAGCTAGGGTGCCAC
* * * ** * *
771069 CAACTCATGTGGGCTTTAAAAGAACAAGGTGTTCTGCTCTTTGAGGACTAAACAGGTGCCACCAA
129 AAACTCATGTAGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAACAGGTGCCACCAA
771134 CTTGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACAGGTGCCACCAACTTGTAT
194 CTTGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACAGGTGCCACCAACTTGTAT
* * * * * * *
771199 TGGCTTTAAAA-AAGATGTC-CTACTCTTTGAGGACTAAATAAGTGCCACAAACTTGTGTGGGCT
259 GGGCTTTAAAAGAAAAAGGCGCTACTCTTTGAAGACTAAACAAGTGCCACAAACTTATGTGGGCT
771262 TTAAAAGAAAAAGGCATCATGTTCTTTAAGGACTAAACA
324 TTAAAAGAAAAAGGCATCATGTTCTTTAAGGACTAAACA
* * * * * *
771301 GGTTCTATCAACTTGTGTGGGTTTTAAAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAATGGGT
1 GGTGCCACCAACTTGTGTGGGCTTT-AAA-AAAAA--TGTCCTACTCTTTGAGGACTAAACGGGT
* * * * *
771366 GCCACCAACTTGTGTGGGCTTTGACTTAGGTGCCGCCAGCTTGTGCAAGCTTTAGCTAGGGTGCC
62 GCCACCAACTTGTGTGGGCTTTAACTCAAGTGCCACCAGCTTGTACAAGCTTTAGCTAGGGTGCC
* *
771431 ACAAACTCGTGTAGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAACGGGTGCCACC
127 ACAAACTCATGTAGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAACAGGTGCCACC
771496 AACTTGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACAGGTGCCACCAACTTGT
192 AACTTGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACAGGTGCCACCAACTTGT
* * * * *
771561 GTGGGCTTTAAAAGAAAAAGGCGTCTTCTCTTTGAAGACTGAACAGGTGCCACCAACTTATGTGG
257 ATGGGCTTTAAAAGAAAAAGGCG-CTACTCTTTGAAGACTAAACAAGTGCCACAAACTTATGTGG
* * **
771626 GCTTTAAAAGAAAAAGGCGTCCTGTTCTTTAAGGACTAAATG
321 GCTTTAAAAGAAAAAGGCATCATGTTCTTTAAGGACTAAACA
* *
771668 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGTCCTACTTTTTGAGGACTAAACAGGTGCCA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGTCCTACTCTTTGAGGACTAAACGGGTGCCA
771733 CCAACTTGTGTGGGCTTTAA
66 CCAACTTGTGTGGGCTTTAA
771753 AAGGGGTAAC
Statistics
Matches: 390, Mismatches: 55, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
362 19 0.05
363 50 0.13
364 214 0.55
365 10 0.03
366 4 0.01
367 93 0.24
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (362 bp):
GGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGTCCTACTCTTTGAGGACTAAACGGGTGCCA
CCAACTTGTGTGGGCTTTAACTCAAGTGCCACCAGCTTGTACAAGCTTTAGCTAGGGTGCCACAA
ACTCATGTAGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAACAGGTGCCACCAACT
TGTGTGAGCTTTAAAAAAGGCGTCCTACTCTTTGAGGACTAAACAGGTGCCACCAACTTGTATGG
GCTTTAAAAGAAAAAGGCGCTACTCTTTGAAGACTAAACAAGTGCCACAAACTTATGTGGGCTTT
AAAAGAAAAAGGCATCATGTTCTTTAAGGACTAAACA
Found at i:773126 original size:22 final size:21
Alignment explanation
Indices: 773054--773126 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
773044 ATTTTTGTTG
*
773054 TTTC-CTTTT-TTATTTTGCT
1 TTTCACTTTTCTTGTTTTGCT
*
773073 TTTGCACTTTTCTTGTTTTTCT
1 TTT-CACTTTTCTTGTTTTGCT
*
773095 TTTCA-TTTTTTGTGCTTTTGCT
1 TTTCACTTTTCT-TG-TTTTGCT
*
773117 TTTAACTTTT
1 TTTCACTTTT
773127 ACATCATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 3 0.07
20 6 0.14
21 9 0.21
22 21 0.49
23 4 0.09
ACGTcount: A:0.07, C:0.15, G:0.08, T:0.70
Consensus pattern (21 bp):
TTTCACTTTTCTTGTTTTGCT
Found at i:779814 original size:12 final size:12
Alignment explanation
Indices: 779797--779826 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
779787 TTCTCCACCC
779797 TTTTTTTC-TCT
1 TTTTTTTCTTCT
779808 TTTTTTTCTTCT
1 TTTTTTTCTTCT
779820 TTTTTTT
1 TTTTTTT
779827 GCTCGTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTTCTTCT
Found at i:783610 original size:30 final size:31
Alignment explanation
Indices: 783569--783643 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 31
783559 TTATGTGGGG
* *
783569 ACGATTCAGTGGCATTTTGTC-TCAAAGTCC
1 ACGACTCAGTGGCATTTTGTCTTCAAAGCCC
* *
783599 ACGACTCAGTGGCATTTTTTCTTTAAAGCCC
1 ACGACTCAGTGGCATTTTGTCTTCAAAGCCC
* *
783630 ACAACTCCGTGGCA
1 ACGACTCAGTGGCA
783644 CCTTGTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
30 19 0.50
31 19 0.50
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (31 bp):
ACGACTCAGTGGCATTTTGTCTTCAAAGCCC
Found at i:783688 original size:61 final size:62
Alignment explanation
Indices: 783620--784272 Score: 697
Period size: 61 Copynumber: 10.0 Consensus size: 62
783610 GCATTTTTTC
* *
783620 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
* * * *
783681 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT-TTTAAAGCCCACAACTCCGTGGCACCCT
* * * * * * *
783743 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT-AAGTCGACAACTCCGTGGCACCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT-TTTAAAGCCCACAACTCCGTGGCACCCT
*
783805 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACC-----
783869 CT
61 CT
*
783871 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCCGTGGCACC--
783936 TTTCT
61 ---CT
* *
783941 GTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCCGTGGCACTC
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC-CTTTT-AAAGCCCACAACTCCGTGGCACCC
784006 -
62 T
* *
784006 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACC-----
784071 CT
61 CT
*
784073 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCCGTGGCACC--
784138 TTTCT
61 ---CT
* * *
784143 GTTTAAAGCCCACAACTTCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACGACTCCGTGGCACTC
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCCGTGGCACCC
784208 -
62 T
* * * *
784208 TTTAAAGCCCACAACTCCGTGGCACATTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
784270 TTT
1 TTT
784273 TCCCTTTTAA
Statistics
Matches: 533, Mismatches: 35, Indels: 47
0.87 0.06 0.08
Matches are distributed among these distances:
60 3 0.01
61 120 0.23
62 101 0.19
63 10 0.02
64 49 0.09
66 7 0.01
67 44 0.08
68 11 0.02
69 10 0.02
70 61 0.11
71 117 0.22
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (62 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
Found at i:783727 original size:34 final size:34
Alignment explanation
Indices: 783592--784325 Score: 695
Period size: 34 Copynumber: 22.3 Consensus size: 34
783582 ATTTTGTCTC
* * *
783592 AAAGTCCACGACTCAGTGGCA--TTTTT-TCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
*
783623 AAAGCCCACAACTCCGTGGCACCTTGTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* *
783656 TAAGTCCACAACTCCGTGGCACC-----CT-TTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* *
783684 AAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-TCTTT
*
783719 -AAGTCCACAACTCCGTGGCACC-----CT-TTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* * *
783746 AAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-TCTTT
* * *
783781 -AAGTCGACAACTCCGTGGCACC-----C-GTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
*
783808 -AAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
783841 AAAGCCCACAACTCCGTGGCACCTTTTTCT-TTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* *
783874 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTC-TTT
*
783910 CAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
783945 AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTC-TTT
*
783981 CAAAGCCCACGACTCCGTGGCA-------CTCTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* *
784009 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
784043 AAAGCCCACAACTCCGTGGCACCTTTTTCT-TTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* *
784076 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTC-TTT
*
784112 CAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* *
784147 AAAGCCCACAACTTCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTC-TTT
*
784183 CAAAGCCCACGACTCCGTGGCA-------CTCTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
* * *
784211 AAAGCCCACAACTCCGTGGCACATTCTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
*
784245 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTCTTT
* * * * *
784280 TAAGTCCACAACTCCGTGGCATCTTTCTCCCTTCCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTCTT--T
784316 AAAGCCCACA
1 AAAGCCCACA
784326 CAAGTCGGTG
Statistics
Matches: 587, Mismatches: 59, Indels: 109
0.78 0.08 0.14
Matches are distributed among these distances:
27 66 0.11
28 48 0.08
29 7 0.01
31 18 0.03
32 1 0.00
33 82 0.14
34 195 0.33
35 54 0.09
36 35 0.06
37 81 0.14
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTCTTT
Found at i:783817 original size:27 final size:27
Alignment explanation
Indices: 783778--783829 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
783768 TTTTTTCATC
* *
783778 TTTAAGTCGACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
783805 TTTAAGCCCACAACTCCGTGGCACC
1 TTTAAGCCCACAACTCCGTGGCACC
783830 TTTTTCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.37, G:0.19, T:0.21
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCG
Found at i:784086 original size:202 final size:202
Alignment explanation
Indices: 783618--784325 Score: 996
Period size: 202 Copynumber: 3.6 Consensus size: 202
783608 TGGCATTTTT
* * *
783618 TCTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCACC---
1 TCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTT
* * *
783679 --CTTTTAAAGCCCACAATTCCGTGGCACT-TTTTT-CATCTTT--AAGTCCACAACTCCGTGGC
66 TTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT-TTTCAAAGCCCACAACTCCGTGGC
* * * * *
783738 ACC-----CT-TTTAAAGCCCACAATTCTGTGGCACT-TTTTTCATC-TTT--AAGTCGACAACT
130 ACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-TCTTTTCAAAGCCCACGACT
783793 CCGTGGCAC
194 CCGTGGCAC
* *
783802 CCGTTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTT
1 TC-TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTT
*
783866 TTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGC
65 TTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGC
783931 ACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTC
130 ACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTC
783996 CGTGGCAC
195 CGTGGCAC
784004 TCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTT
1 TCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTT
*
784069 TTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCA
66 TTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCA
* *
784134 CCTTTTTCTGTTTAAAGCCCACAACTTCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACGACTCC
131 CCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCC
784199 GTGGCAC
196 GTGGCAC
*
784206 TCTTTAAAGCCCACAACTCCGTGGCACATTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 TCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTT
* * *
784271 TTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTCTCCC-TTCCTAAAGCCCACA
65 TTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC-AAAGCCCACA
784326 CAAGTCGGTG
Statistics
Matches: 476, Mismatches: 22, Indels: 33
0.90 0.04 0.06
Matches are distributed among these distances:
184 32 0.07
185 24 0.05
190 26 0.05
191 8 0.02
192 2 0.00
193 21 0.04
198 2 0.00
199 26 0.05
200 9 0.02
201 3 0.01
202 275 0.58
203 25 0.05
204 18 0.04
205 5 0.01
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (202 bp):
TCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTT
TTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCA
CCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCC
GTGGCAC
Found at i:784353 original size:33 final size:34
Alignment explanation
Indices: 784310--784374 Score: 114
Period size: 33 Copynumber: 1.9 Consensus size: 34
784300 ATCTTTCTCC
784310 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCTT
*
784344 CTTCC-AAAGCCTACACAAGTCGGTGGCAACC
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACC
784375 CTTTTAAGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 25 0.83
34 5 0.17
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.18
Consensus pattern (34 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCTT
Found at i:784437 original size:49 final size:48
Alignment explanation
Indices: 784377--785221 Score: 1083
Period size: 49 Copynumber: 17.8 Consensus size: 48
784367 TGGCAACCCT
* * *
784377 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
* *
784426 TTTAAGTCCAATGTAGCTGGCCGTGACTCAGCACATTGGCA---C--C
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
* * *
784469 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT-CATC
* *
784521 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
784570 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--C
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
* * *
784613 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
784662 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--C
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
* * * * *
784705 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTCATT
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
784754 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--C
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
* * * *
784797 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
*
784846 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
*
784895 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
*
784944 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
*
784992 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATC
* *
785041 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
785089 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--C
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
* * *
785132 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT-CATC
*
785184 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
785222 ACATCCTTTT
Statistics
Matches: 703, Mismatches: 56, Indels: 71
0.85 0.07 0.09
Matches are distributed among these distances:
43 191 0.27
45 4 0.01
47 3 0.00
48 92 0.13
49 334 0.48
50 4 0.01
52 75 0.11
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (48 bp):
TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATC
Found at i:784638 original size:92 final size:92
Alignment explanation
Indices: 784520--785177 Score: 923
Period size: 92 Copynumber: 7.0 Consensus size: 92
784510 CCTTTTCCAT
* *
784520 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
784585 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
784612 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
784677 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * * *
784704 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTCATTTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
784769 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
784796 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
*
784861 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
*
784892 ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
784957 TAGCTGGCCTTGAATCAGCACATTGGCACCTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA---C
*
784989 ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
785054 TAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
64 TAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
785088 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
785147 GCTGGCCTTGAATCAGCATATCGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
785174 CTTT
1 CTTT
785178 TCCATCTTTA
Statistics
Matches: 531, Mismatches: 24, Indels: 28
0.91 0.04 0.05
Matches are distributed among these distances:
86 7 0.01
91 37 0.07
92 263 0.50
93 1 0.00
96 1 0.00
97 135 0.25
98 84 0.16
99 1 0.00
102 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:786114 original size:33 final size:33
Alignment explanation
Indices: 786077--786143 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
786067 TTCAACGATT
786077 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
* *** *
786110 TGTATTGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
786143 T
1 T
786144 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:786202 original size:13 final size:13
Alignment explanation
Indices: 786184--786208 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
786174 ATTACTCAAA
786184 TGTATCGATACAT
1 TGTATCGATACAT
786197 TGTATCGATACA
1 TGTATCGATACA
786209 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:786272 original size:51 final size:52
Alignment explanation
Indices: 786217--786340 Score: 180
Period size: 52 Copynumber: 2.4 Consensus size: 52
786207 CACTGATCTT
* *
786217 TGTATCGATACATGCAGG-TAATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
* *
786268 TGTATCGATACATGTAGGCAAATTTGCCGAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
786320 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
786341 CTTTTCATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
51 17 0.26
52 45 0.69
53 3 0.05
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:789952 original size:13 final size:13
Alignment explanation
Indices: 789934--789959 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
789924 CAATTTTTTG
789934 TGTATCGATACAT
1 TGTATCGATACAT
789947 TGTATCGATACAT
1 TGTATCGATACAT
789960 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:790043 original size:20 final size:20
Alignment explanation
Indices: 789998--790073 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
789988 CTGCCAAGAA
***
789998 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
790019 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
790039 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
*
790059 GTGTATCGATACATT
1 ATGTATCGATACATT
790074 TAAGGGTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:790699 original size:21 final size:21
Alignment explanation
Indices: 790658--790701 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
790648 CTCTCTTTTA
* *
790658 TCTCCCCCATTTATGAATAAT
1 TCTCCCCCATTAATCAATAAT
790679 TCTCCCCC-TTAATCAATTAAT
1 TCTCCCCCATTAATCAA-TAAT
790700 TC
1 TC
790702 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.32, G:0.02, T:0.39
Consensus pattern (21 bp):
TCTCCCCCATTAATCAATAAT
Found at i:792364 original size:21 final size:21
Alignment explanation
Indices: 792340--792386 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
792330 TTTGATGCTG
792340 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
792360 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
792381 ATTTTG
1 ATTTTG
792387 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:792527 original size:13 final size:13
Alignment explanation
Indices: 792509--792545 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
792499 AATCCTCCTA
* *
792509 TATCGATAGAGTG
1 TATCGATACAATG
792522 TATCGATACAATG
1 TATCGATACAATG
792535 TATCGATACAA
1 TATCGATACAA
792546 AGAAAAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:792556 original size:20 final size:20
Alignment explanation
Indices: 792531--792609 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
792521 GTATCGATAC
792531 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
792551 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
792576 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
792596 CATGTATCGATACA
1 AATGTATCGATACA
792610 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:794633 original size:15 final size:15
Alignment explanation
Indices: 794613--794643 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
794603 ATTTCGTTTG
*
794613 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
794628 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
794643 G
1 G
794644 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:796476 original size:21 final size:21
Alignment explanation
Indices: 796447--796491 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
796437 AAGTTTTCAT
*
796447 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
796467 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
796489 TTT
1 TTT
796492 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:796808 original size:36 final size:36
Alignment explanation
Indices: 796761--796832 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
796751 TTCAAAAGTG
796761 TAAGAATTTGAATTTACCTCATTTTCCTCGTAAGCC
1 TAAGAATTTGAATTTACCTCATTTTCCTCGTAAGCC
796797 TAAGAATTTGAATTTACCTCATTTTCCTCGTAAGCC
1 TAAGAATTTGAATTTACCTCATTTTCCTCGTAAGCC
796833 ATGAGACAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (36 bp):
TAAGAATTTGAATTTACCTCATTTTCCTCGTAAGCC
Found at i:798773 original size:13 final size:13
Alignment explanation
Indices: 798755--798780 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
798745 CAATTTTTTG
798755 TGTATCGATACAT
1 TGTATCGATACAT
798768 TGTATCGATACAT
1 TGTATCGATACAT
798781 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:798863 original size:20 final size:20
Alignment explanation
Indices: 798818--798893 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
798808 CTGCCAAGAA
***
798818 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
798839 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
798859 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
*
798879 GTGTATCGATACATT
1 ATGTATCGATACATT
798894 TAAGGGTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:802224 original size:13 final size:13
Alignment explanation
Indices: 802206--802230 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
802196 CATAAAGTGT
802206 TGTATCGATACAA
1 TGTATCGATACAA
802219 TGTATCGATACA
1 TGTATCGATACA
802231 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:802228 original size:33 final size:33
Alignment explanation
Indices: 802186--802252 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
802176 TTCAACGATT
802186 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
802219 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
802252 T
1 T
802253 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:802311 original size:13 final size:13
Alignment explanation
Indices: 802293--802352 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
802283 ATTACTCAAA
802293 TGTATCGATACAT
1 TGTATCGATACAT
*
802306 TGTATCGATACGT
1 TGTATCGATACAT
*
802319 T-TA---AT--AG
1 TGTATCGATACAT
802326 TGTATCGATACAT
1 TGTATCGATACAT
802339 TGTATCGATACAT
1 TGTATCGATACAT
802352 T
1 T
802353 TAATAATGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
7 1 0.03
8 2 0.05
9 2 0.05
11 2 0.05
12 2 0.05
13 28 0.76
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:802335 original size:33 final size:33
Alignment explanation
Indices: 802272--802371 Score: 148
Period size: 33 Copynumber: 3.0 Consensus size: 33
802262 TGCCAAAAAA
*
802272 TGTATCGATACA-TTACTCAAATGTATCGATACAT
1 TGTATCGATACATTTAAT--AATGTATCGATACAT
* *
802306 TGTATCGATACGTTTAATAGTGTATCGATACAT
1 TGTATCGATACATTTAATAATGTATCGATACAT
802339 TGTATCGATACATTTAATAATGTATCGATACAT
1 TGTATCGATACATTTAATAATGTATCGATACAT
802372 GCAGGCAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
33 45 0.75
34 11 0.18
35 4 0.07
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATTTAATAATGTATCGATACAT
Found at i:802401 original size:52 final size:51
Alignment explanation
Indices: 802339--802487 Score: 246
Period size: 52 Copynumber: 2.9 Consensus size: 51
802329 ATCGATACAT
802339 TGTATCGATACATTTAATAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATTTAA-AATGTATCGATACATGCAGGCAAATTTGCCCAGA
802391 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATT-TAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
802443 TGTATCGATACACTATT-AAATGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACA-T-TTAAAATGTATCGATACATGCAGGCAAATTT
802488 TCATATTTCG
Statistics
Matches: 93, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
52 87 0.94
53 5 0.05
54 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (51 bp):
TGTATCGATACATTTAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:806987 original size:13 final size:13
Alignment explanation
Indices: 806969--806994 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
806959 CAGGATAGTT
806969 TTGTATCGATACA
1 TTGTATCGATACA
806982 TTGTATCGATACA
1 TTGTATCGATACA
806995 AAACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:807085 original size:21 final size:21
Alignment explanation
Indices: 807061--807106 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
807051 AATGTTTAAC
807061 CATT-GAGACCATGTATCGATA
1 CATTCGAGA-CATGTATCGATA
*
807082 CATTCTAGACATGTATCGATA
1 CATTCGAGACATGTATCGATA
807103 CATT
1 CATT
807107 TAAACAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (21 bp):
CATTCGAGACATGTATCGATA
Found at i:815482 original size:15 final size:15
Alignment explanation
Indices: 815462--815492 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
815452 GTCCGAGTTG
815462 TTTCTGTACCCTTTC
1 TTTCTGTACCCTTTC
815477 TTTCTGTACCCTTTC
1 TTTCTGTACCCTTTC
815492 T
1 T
815493 ATAATGTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.32, G:0.06, T:0.55
Consensus pattern (15 bp):
TTTCTGTACCCTTTC
Found at i:818737 original size:20 final size:20
Alignment explanation
Indices: 818712--818753 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
818702 ATTAAGCATC
818712 TTGTTTTTATATAGGATGTA
1 TTGTTTTTATATAGGATGTA
818732 TTGTTTTTATATAGGATGTA
1 TTGTTTTTATATAGGATGTA
818752 TT
1 TT
818754 AAATGTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (20 bp):
TTGTTTTTATATAGGATGTA
Found at i:824479 original size:16 final size:16
Alignment explanation
Indices: 824458--824493 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
824448 CTTTTTTGGT
824458 GCTGTTATGAAGTGTA
1 GCTGTTATGAAGTGTA
824474 GCTGTTATGAAGTGTA
1 GCTGTTATGAAGTGTA
824490 GCTG
1 GCTG
824494 AGGGAGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.08, G:0.33, T:0.36
Consensus pattern (16 bp):
GCTGTTATGAAGTGTA
Found at i:825079 original size:3 final size:3
Alignment explanation
Indices: 825071--825107 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
825061 TTTTGTCGTT
825071 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
825108 CATCATCATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:825131 original size:2 final size:2
Alignment explanation
Indices: 825124--825153 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
825114 CATCATCGTC
*
825124 AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
825154 TTGTTGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:826976 original size:14 final size:15
Alignment explanation
Indices: 826944--826976 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
826934 ATTTTTTAAA
*
826944 TTTCGTAAATATGTT
1 TTTCGTAAATATATT
826959 TTTCGTAAA-ATATT
1 TTTCGTAAATATATT
826973 TTTC
1 TTTC
826977 AAAATAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (15 bp):
TTTCGTAAATATATT
Found at i:827398 original size:36 final size:36
Alignment explanation
Indices: 827357--827486 Score: 108
Period size: 36 Copynumber: 3.6 Consensus size: 36
827347 TAAAAAAATT
827357 TATTGTATATGTATTATTTTTATTAAAATTAATTAA
1 TATTGTATATGTATTATTTTTATTAAAATTAATTAA
** * *
827393 TATTGTGCATGTATTATTACTTT-TT---ATTTATTTA
1 TATTGTATATGTATTATT--TTTATTAAAATTAATTAA
* ***
827427 TGAAT-TATACAAATTTATTTTTATTAAAATTAATTAA
1 T-ATTGTATATGTA-TTATTTTTATTAAAATTAATTAA
*
827464 TATTGTAAATGTATTATTTTTAT
1 TATTGTATATGTATTATTTTTAT
827487 AATTGATAGA
Statistics
Matches: 68, Mismatches: 17, Indels: 18
0.66 0.17 0.17
Matches are distributed among these distances:
33 3 0.04
34 13 0.19
35 7 0.10
36 28 0.41
37 14 0.21
38 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (36 bp):
TATTGTATATGTATTATTTTTATTAAAATTAATTAA
Found at i:827711 original size:11 final size:11
Alignment explanation
Indices: 827695--827731 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
827685 TTATTACTTT
827695 TTATTTATAAA
1 TTATTTATAAA
*
827706 TTATTTATAAT
1 TTATTTATAAA
827717 TTATTTATAAA
1 TTATTTATAAA
827728 TTAT
1 TTAT
827732 ACAAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATTTATAAA
Found at i:828055 original size:298 final size:296
Alignment explanation
Indices: 827408--828261 Score: 1379
Period size: 298 Copynumber: 2.9 Consensus size: 296
827398 TGCATGTATT
* *
827408 ATTACTTTTTATTTATTTATGAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTAAA
1 ATTA-TTTTTATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTACA
827473 TGTATTATTTTTATAATTGATAGAACTTAAATTTATGTTAG-TCAACAATATTTTACTTTTTTTC
65 TGTATTATTTTTATAATTGATAGAACTTAAATTTATGTTAGCT-AACAATATTTTAC-TTTTTTC
* * *
827537 AATAATGACTTATTTCGGATTTACGGACGCACACATTTCATTTTTCGGTAACGACTTAAATACGA
128 GATAATGACTTATTTCGGATTTACAGACGCACACATTTTATTTTTCGGTAACGACTTAAATACGA
* * *
827602 GCTTTCCTTTATCTGTAAAATGACCA-AAAAAAATTCTTGTACATGTATTATTTTTATTAAAACT
193 GCTTTCCTTTATCTGTAAAATGACCAGAAAAAATTTATTGTACATGTATTATTTTTATTAAAATT
*
827666 AATTAATATTGCGCATGTATTATTACTTTTTATTTATAA
258 AAATAATATTGCGCATGTATTATTACTTTTTATTTATAA
*
827705 ATTATTTATAATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTACA
1 ATTATTT-TTATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTACA
*
827770 TGTATTATTGTTATAATTGATAGAACTTAAATTTATGTTAGCTAACAATATTTTACTTTTTTCGA
65 TGTATTATTTTTATAATTGATAGAACTTAAATTTATGTTAGCTAACAATATTTTACTTTTTTCGA
* * *
827835 TAATGACTTATTTCAGATTTACAGACTCACACATTTTATTTTTCGGTAACGGCTTAAATACGAGC
130 TAATGACTTATTTCGGATTTACAGACGCACACATTTTATTTTTCGGTAACGACTTAAATACGAGC
* * *
827900 TTTTCTTTATCTATAAAATGAACCAGAAAAAATTTTTTGTACATGTATTATTTTTATTAAAATTA
195 TTTCCTTTATCTGTAAAATG-ACCAGAAAAAATTTATTGTACATGTATTATTTTTATTAAAATTA
* *
827965 AATAATATTGTGCATGTATTATTATTTTTTATTTATAA
259 AATAATATTGCGCATGTATTATTACTTTTTATTTATAA
828003 ATTATTTTTCATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTACA
1 ATTATTTTT-ATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTACA
* * ** *
828068 TGTATTATTTTTATAATTGATAGAACTTAAATTTATGTTAGCCAATAATAAATTATTTTTTTCGA
65 TGTATTATTTTTATAATTGATAGAACTTAAATTTATGTTAGCTAACAATATTTTACTTTTTTCGA
* * * *
828133 TAACGACTTATTTCGGATTTACAGACGCGCACATTTTATTTTTTGGTAACCACTTAAATACGAGC
130 TAATGACTTATTTCGGATTTACAGACGCACACATTTTATTTTTCGGTAACGACTTAAATACGAGC
828198 TTTCCTTTATCTGTAAAATGACCAAGAAAAAATTTATTGTACATGTATTATTTTTATTAAAATT
195 TTTCCTTTATCTGTAAAATGACC-AGAAAAAATTTATTGTACATGTATTATTTTTATTAAAATT
828262 TTATTTATAA
Statistics
Matches: 516, Mismatches: 35, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
296 89 0.17
297 119 0.23
298 308 0.60
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (296 bp):
ATTATTTTTATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAATTAATATTGTACAT
GTATTATTTTTATAATTGATAGAACTTAAATTTATGTTAGCTAACAATATTTTACTTTTTTCGAT
AATGACTTATTTCGGATTTACAGACGCACACATTTTATTTTTCGGTAACGACTTAAATACGAGCT
TTCCTTTATCTGTAAAATGACCAGAAAAAATTTATTGTACATGTATTATTTTTATTAAAATTAAA
TAATATTGCGCATGTATTATTACTTTTTATTTATAA
Found at i:828276 original size:11 final size:11
Alignment explanation
Indices: 828262--828298 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
828252 TATTAAAATT
828262 TTATTTATAAA
1 TTATTTATAAA
*
828273 TTATTTATAAT
1 TTATTTATAAA
828284 TTATTTATAAA
1 TTATTTATAAA
828295 TTAT
1 TTAT
828299 AAAAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATTTATAAA
Found at i:828276 original size:22 final size:22
Alignment explanation
Indices: 828251--828399 Score: 87
Period size: 22 Copynumber: 6.8 Consensus size: 22
828241 TGTATTATTT
828251 TTATTAAAATTTTATTTATAAA
1 TTATTAAAATTTTATTTATAAA
*
828273 TTATTTATAA-TTTATTTATAAA
1 TTA-TTAAAATTTTATTTATAAA
* *
828295 TTATAAAAATTTATTTTTATTAAA
1 TTATTAAAATTT-TATTTA-TAAA
* ** **
828319 --ATTAATTAATATTATGCATGTA
1 TTATTAA--AATTTTATTTATAAA
**
828341 TTATT-ACTTTTTATTTATAAA
1 TTATTAAAATTTTATTTATAAA
*
828362 TTATTTATAA-TTTATTTATAAA
1 TTA-TTAAAATTTTATTTATAAA
828384 TTA-TACAAA-TTTATTT
1 TTATTA-AAATTTTATTT
828400 TTATTAAAAT
Statistics
Matches: 94, Mismatches: 22, Indels: 23
0.68 0.16 0.17
Matches are distributed among these distances:
20 2 0.02
21 24 0.26
22 43 0.46
23 14 0.15
24 11 0.12
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (22 bp):
TTATTAAAATTTTATTTATAAA
Found at i:828302 original size:43 final size:43
Alignment explanation
Indices: 828255--828399 Score: 134
Period size: 43 Copynumber: 3.3 Consensus size: 43
828245 TTATTTTTAT
828255 TAAAATTTTATTTATAAATTATTTATAATTTATTTATAAATTA
1 TAAAATTTTATTTATAAATTATTTATAATTTATTTATAAATTA
* * ** **
828298 TAAAAATTTATTTTTATTAAA--ATTAATTAATATTATGCATGTATTA
1 T-AAAATTT-TATTTA-TAAATTATTTA-TAAT-TTATTTATAAATTA
* **
828344 TTACTTTTTATTTATAAATTATTTATAATTTATTTATAAATTA
1 TAAAATTTTATTTATAAATTATTTATAATTTATTTATAAATTA
828387 TACAAA-TTTATTT
1 TA-AAATTTTATTT
828400 TTATTAAAAT
Statistics
Matches: 76, Mismatches: 18, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
43 23 0.30
44 21 0.28
45 17 0.22
46 15 0.20
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (43 bp):
TAAAATTTTATTTATAAATTATTTATAATTTATTTATAAATTA
Found at i:828354 original size:46 final size:47
Alignment explanation
Indices: 828301--828434 Score: 140
Period size: 43 Copynumber: 3.0 Consensus size: 47
828291 TAAATTATAA
828301 AAATTTATTTTTATTAAAATTAATTAATATTATGCATGTATTATTAC
1 AAATTTATTTTTATTAAAATTAATTAATATTATGCATGTATTATTAC
* ** **
828348 ---TTT-TTATTTA-T-AAATT-ATTTATAATTTATTTATAAATTA-TAC
1 AAATTTATT-TTTATTAAAATTAATTAAT-A-TTATGCATGTATTATTAC
828390 AAATTTATTTTTATTAAAATTAATTAATATTATGCATGTATTATT
1 AAATTTATTTTTATTAAAATTAATTAATATTATGCATGTATTATT
828435 TTTATAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 22
0.67 0.10 0.22
Matches are distributed among these distances:
41 5 0.08
42 9 0.14
43 13 0.20
44 7 0.11
45 7 0.11
46 13 0.20
47 7 0.11
48 5 0.08
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (47 bp):
AAATTTATTTTTATTAAAATTAATTAATATTATGCATGTATTATTAC
Found at i:828360 original size:89 final size:89
Alignment explanation
Indices: 828260--828434 Score: 341
Period size: 89 Copynumber: 2.0 Consensus size: 89
828250 TTTATTAAAA
828260 TTTTATTTATAAATTATTTATAATTTATTTATAAATTATAAAAATTTATTTTTATTAAAATTAAT
1 TTTTATTTATAAATTATTTATAATTTATTTATAAATTATAAAAATTTATTTTTATTAAAATTAAT
828325 TAATATTATGCATGTATTATTACT
66 TAATATTATGCATGTATTATTACT
*
828349 TTTTATTTATAAATTATTTATAATTTATTTATAAATTATACAAATTTATTTTTATTAAAATTAAT
1 TTTTATTTATAAATTATTTATAATTTATTTATAAATTATAAAAATTTATTTTTATTAAAATTAAT
828414 TAATATTATGCATGTATTATT
66 TAATATTATGCATGTATTATT
828435 TTTATAATTG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (89 bp):
TTTTATTTATAAATTATTTATAATTTATTTATAAATTATAAAAATTTATTTTTATTAAAATTAAT
TAATATTATGCATGTATTATTACT
Found at i:828367 original size:11 final size:11
Alignment explanation
Indices: 828351--828387 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
828341 TTATTACTTT
828351 TTATTTATAAA
1 TTATTTATAAA
*
828362 TTATTTATAAT
1 TTATTTATAAA
828373 TTATTTATAAA
1 TTATTTATAAA
828384 TTAT
1 TTAT
828388 ACAAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATTTATAAA
Found at i:828486 original size:85 final size:86
Alignment explanation
Indices: 828259--828461 Score: 243
Period size: 89 Copynumber: 2.3 Consensus size: 86
828249 TTTTATTAAA
* * * *
828259 ATTTT-ATTTATAAATTATTTATAATTTATTTATAAATTATAAAAATTTATTTTTATTAAAATTA
1 ATTTTAATTGATAAA-TACTTATAATTTATTTACAAA-TATACAAATTTATTTTTATTAAAATTA
828323 ATTAATATTATGCATGTATTATT
64 ATTAATATTATGCATGTATTATT
* * * *
828346 ACTTTTTATTTATAAATTATTTATAATTTATTTATAAATTATACAAATTTATTTTTATTAAAATT
1 A-TTTTAATTGATAAA-TACTTATAATTTATTTACAAA-TATACAAATTTATTTTTATTAAAATT
828411 AATTAATATTATGCATGTATTATT
63 AATTAATATTATGCATGTATTATT
*
828435 -TTTATAATTGATAGA-ACTTA-AATTTAT
1 ATTT-TAATTGATAAATACTTATAATTTAT
828462 GTTAGCCAAA
Statistics
Matches: 108, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
85 7 0.06
86 4 0.04
87 4 0.04
88 12 0.11
89 81 0.75
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.54
Consensus pattern (86 bp):
ATTTTAATTGATAAATACTTATAATTTATTTACAAATATACAAATTTATTTTTATTAAAATTAAT
TAATATTATGCATGTATTATT
Found at i:830809 original size:19 final size:19
Alignment explanation
Indices: 830785--830847 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
830775 ATTCAGTAAA
830785 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
*
830804 TGTATCAATAC--AA----
1 TGTATCGATACATAAGTTT
830817 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
830836 TGTATCGATACA
1 TGTATCGATACA
830848 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTTT
Found at i:830824 original size:32 final size:32
Alignment explanation
Indices: 830783--830977 Score: 150
Period size: 32 Copynumber: 6.0 Consensus size: 32
830773 ACATTCAGTA
*
830783 AATGTATCGATACATAAGTTTTGTATCAATAC
1 AATGTATCGATACATAAGTTTTGTATCGATAC
830815 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTTTTGTATCGATAC
* ** * *
830847 AATGTATCGCTAC-TAAGCTACTG--TCAAGGA-
1 AATGTATCGATACATAAG-TTTTGTATCGA-TAC
*** *
830877 AATGTATCGATACATTAAGGAAATGTATCGATAT
1 AATGTATCGATACA-TAA-GTTTTGTATCGATAC
* *
830911 AATGTTTCGATACAT-CGATCTTTGTATCGATAC
1 AATGTATCGATACATAAG-T-TTTGTATCGATAC
* *
830944 ATTGTATCGATACAT-CGATCTTTGTATCGATAC
1 AATGTATCGATACATAAG-T-TTTGTATCGATAC
830977 A
1 A
830978 TCTAGGAAGT
Statistics
Matches: 134, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
30 15 0.11
31 6 0.04
32 52 0.39
33 45 0.34
34 16 0.12
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
AATGTATCGATACATAAGTTTTGTATCGATAC
Found at i:830942 original size:20 final size:20
Alignment explanation
Indices: 830917--830979 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
830907 ATATAATGTT
830917 TCGATACATCGATCTTTGTA
1 TCGATACATCGATCTTTGTA
830937 TCGAT--A-C-A---TTGTA
1 TCGATACATCGATCTTTGTA
830950 TCGATACATCGATCTTTGTA
1 TCGATACATCGATCTTTGTA
830970 TCGATACATC
1 TCGATACATC
830980 TAGGAAGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
13 10 0.28
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
20 20 0.56
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (20 bp):
TCGATACATCGATCTTTGTA
Found at i:830974 original size:12 final size:13
Alignment explanation
Indices: 830932--830958 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
830922 ACATCGATCT
830932 TTGTATCGATACA
1 TTGTATCGATACA
830945 TTGTATCGATACA
1 TTGTATCGATACA
830958 T
1 T
830959 CGATCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:830978 original size:33 final size:33
Alignment explanation
Indices: 830900--830978 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
830890 ATTAAGGAAA
* * *
830900 TGTATCGATATAATGTTTCGATACATCGATCTT
1 TGTATCGATACATTGTATCGATACATCGATCTT
830933 TGTATCGATACATTGTATCGATACATCGATCTT
1 TGTATCGATACATTGTATCGATACATCGATCTT
830966 TGTATCGATACAT
1 TGTATCGATACAT
830979 CTAGGAAGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATTGTATCGATACATCGATCTT
Found at i:833430 original size:52 final size:51
Alignment explanation
Indices: 833311--833613 Score: 186
Period size: 51 Copynumber: 5.8 Consensus size: 51
833301 TTAAGTTTAT
* *
833311 CAATTGTTCATAATCAGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
1 CAATTCTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * * *
833362 CAATTCTCCTTTAATCGGGGATACTCCAGCTCCGATTTTATTTCCAAAAACAC
1 CAATTCTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACAC
* * * * * * ***
833415 CAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTGTAAC-C
1 CAATTCTTCATAATCGGGGATACTCCAACCCCG--ATTTTAT------TTCCAAAACAC
** * ** * * *
833473 CCGTTACTTCCT-A--GGGGATACTCCAACCCCGGCTTTGTTTCCAAAATAT
1 CAATT-CTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
** * *
833522 TGATT-TCTCATAATCGAGGATACTCCAACCCCGATTTTATTTCTAAAACAC
1 CAATTCT-TCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* *
833573 TAATT-TTCCACAATCGGGGATACTCCAACCCCGATTTTATT
1 CAATTCTT-CATAATCGGGGATACTCCAACCCCGATTTTATT
833614 CATGACCAAA
Statistics
Matches: 185, Mismatches: 50, Indels: 34
0.69 0.19 0.13
Matches are distributed among these distances:
47 1 0.01
48 7 0.04
49 3 0.02
50 1 0.01
51 72 0.39
52 49 0.26
53 14 0.08
54 9 0.05
56 16 0.09
58 5 0.03
59 6 0.03
60 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (51 bp):
CAATTCTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
Found at i:833463 original size:28 final size:28
Alignment explanation
Indices: 833427--833503 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
833417 ATTTTTCACA
* * *
833427 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
**
833455 ATCGGGGATACTGTAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
* *
833483 CTAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
833504 GCTTTGTTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:834746 original size:91 final size:92
Alignment explanation
Indices: 834565--834748 Score: 228
Period size: 91 Copynumber: 2.0 Consensus size: 92
834555 ATCTTTTAAC
* * * * *
834565 TGTGATATTTATAATCAATTAACTTTTCAGCTTTTGTATCAAAAGGAATCTGATTCTCAAATATA
1 TGTGATATTTATAATCAACTAACTTTTCAGCTTTTGTACCAAAAGAAATCCGATTCTCAAATAAA
* *
834630 ATTTATGCATTAGTCTAATCTTTGCAG
66 ATTCATGCATTAGTCTAATCCTTGCAG
** * * **
834657 TGTGAT-TCTTATAATCAACTAACTTTTC-TTTTTTTTACCAAAAGAAATCCGATTCTTATGTAA
1 TGTGATAT-TTATAATCAACTAACTTTTCAGCTTTTGTACCAAAAGAAATCCGATTCTCAAATAA
834720 AATTCATGCATTAGTCTAATCCTTGCAG
65 AATTCATGCATTAGTCTAATCCTTGCAG
834748 T
1 T
834749 CTTTCTTTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
91 53 0.68
92 25 0.32
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (92 bp):
TGTGATATTTATAATCAACTAACTTTTCAGCTTTTGTACCAAAAGAAATCCGATTCTCAAATAAA
ATTCATGCATTAGTCTAATCCTTGCAG
Found at i:835159 original size:94 final size:93
Alignment explanation
Indices: 834753--835361 Score: 688
Period size: 92 Copynumber: 6.7 Consensus size: 93
834743 TGCAGTCTTT
834753 CTTTT-TTTTTTTTT-TAT-AAAA-AATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCC
1 CTTTTCTTTTTTTTTATATAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCC
* * *
834814 TTTACAGTTTGACATTTACAATTAGTCAA
66 -TTACAGTCTGACATTTACAATCAATCAA
* * *
834843 -----CTTTTTTTTTATA-AAAAATAATTTGATTCTCAGATATAATTCATGTATTAGTCTAATCC
1 CTTTTCTTTTTTTTTATATAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCC
**
834902 TTGTAGTCTGACA-TTACAATCAATC-A
66 TTACAGTCTGACATTTACAATCAATCAA
* * * *
834928 ---GTCTTTTTTGTTATATAAAAAAGAATCTGATTTTCAGATATAA-T--T--ATTAGTCTAATT
1 CTTTTCTTTTTTTTTATAT-AAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATC
* * * * *
834985 CTTACAATCTGATATTTACAATTACTTAA
65 CTTACAGTCTGACATTTACAATCAATCAA
* **
835014 CTTTTCTTTTTTTCTATA-AAAAAGAATCTGATTCTTGGATATAATTCATGCATTAGTCTAATCC
1 CTTTTCTTTTTTTTTATATAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCC
* * * *
835078 TTATAGTCTGACATTTAAAATCAACCAG
66 TTACAGTCTGACATTTACAATCAATCAA
* *
835106 CTTTTCTTTTTTTTTATATAGAAAAGAAT-TGGATTCTCAGATATAATTTATGCATTAGTTTAAT
1 CTTTTCTTTTTTTTTATATA-AAAAGAATCT-GATTCTCAGATATAATTCATGCATTAGTCTAAT
* * *
835170 TCTTACAGTCTGACATTTATAATCAATTAA
64 CCTTACAGTCTGACATTTACAATCAATCAA
* *
835200 CTTTTCTTTTTTTTTATA-AAAAAGAATCTGATTTTCAGATATAATTCATGTATTAGTCTAATCC
1 CTTTTCTTTTTTTTTATATAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCC
* *
835264 TTGCAGTTTGACATTTACAATCAATCAA
66 TTACAGTCTGACATTTACAATCAATCAA
* *
835292 CTTTTCTTTTTTTTTTCTATAAAAAAAAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
1 CTTTTC-TTTTTTTTTATAT-AAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
835357 CCTTA
64 CCTTA
835362 TTCTAATAAA
Statistics
Matches: 434, Mismatches: 60, Indels: 45
0.81 0.11 0.08
Matches are distributed among these distances:
84 21 0.05
85 10 0.02
86 21 0.05
87 51 0.12
88 40 0.09
89 35 0.08
90 1 0.00
92 116 0.27
93 15 0.03
94 79 0.18
95 45 0.10
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (93 bp):
CTTTTCTTTTTTTTTATATAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCC
TTACAGTCTGACATTTACAATCAATCAA
Found at i:835243 original size:186 final size:186
Alignment explanation
Indices: 834753--835361 Score: 749
Period size: 186 Copynumber: 3.4 Consensus size: 186
834743 TGCAGTCTTT
834753 CTTTT-TTTTTTTTT-TAT--AAAA-AATCTGATTCTCAGATATAATTCATGCATTAGTCTAATC
1 CTTTTCTTTTTTTTTATATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATC
* * *** * * *
834813 CTTTACAGTTTGACA-TT-T-A-CAATT-AGTCAACTTTTTTTTTATAAAAAATAATTTGATTCT
66 C-TTACAGTCTGACATTTATAATCAATTAACTTTTCTTTTTTTTTATAAAAAAGAATCTGATTTT
834873 CAGATATAATTCATGTATTAGTCTAATCCTTGTAGTCTGACA-TTACAATCAATCAG
130 CAGATATAATTCATGTATTAGTCTAATCCTTGTAGTCTGACATTTACAATCAATCAG
* * *
834929 ----TCTTTTTTGTTATATAAAAAAGAATCTGATTTTCAGATATAA-T--T--ATTAGTCTAATT
1 CTTTTCTTTTTTTTTATATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATC
* * * * * *
834985 CTTACAATCTGATATTTACAATTACTTAACTTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTT
66 CTTACAGTCTGACATTTATAATCAATTAACTTTTCTTTTTTTTTATAAAAAAGAATCTGATT-TT
* * * * *
835050 -GGATATAATTCATGCATTAGTCTAATCCTTATAGTCTGACATTTAAAATCAACCAG
130 CAGATATAATTCATGTATTAGTCTAATCCTTGTAGTCTGACATTTACAATCAATCAG
* * *
835106 CTTTTCTTTTTTTTTATATAGAAAAGAAT-TGGATTCTCAGATATAATTTATGCATTAGTTTAAT
1 CTTTTCTTTTTTTTTATATAAAAAAGAATCT-GATTCTCAGATATAATTCATGCATTAGTCTAAT
*
835170 TCTTACAGTCTGACATTTATAATCAATTAACTTTTCTTTTTTTTTATAAAAAAGAATCTGATTTT
65 CCTTACAGTCTGACATTTATAATCAATTAACTTTTCTTTTTTTTTATAAAAAAGAATCTGATTTT
* * *
835235 CAGATATAATTCATGTATTAGTCTAATCCTTGCAGTTTGACATTTACAATCAATCAA
130 CAGATATAATTCATGTATTAGTCTAATCCTTGTAGTCTGACATTTACAATCAATCAG
* *
835292 CTTTTCTTTTTTTTTTCTATAAAAAAAAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
1 CTTTTC-TTTTTTTTTATATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
835357 CCTTA
65 CCTTA
835362 TTCTAATAAA
Statistics
Matches: 362, Mismatches: 46, Indels: 39
0.81 0.10 0.09
Matches are distributed among these distances:
171 10 0.03
172 15 0.04
173 8 0.02
174 5 0.01
175 3 0.01
176 70 0.19
177 32 0.09
180 1 0.00
181 37 0.10
182 1 0.00
184 1 0.00
185 2 0.01
186 121 0.33
187 55 0.15
188 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (186 bp):
CTTTTCTTTTTTTTTATATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATC
CTTACAGTCTGACATTTATAATCAATTAACTTTTCTTTTTTTTTATAAAAAAGAATCTGATTTTC
AGATATAATTCATGTATTAGTCTAATCCTTGTAGTCTGACATTTACAATCAATCAG
Found at i:835382 original size:18 final size:18
Alignment explanation
Indices: 835359--835393 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
835349 AGTCTAATCC
835359 TTATTCTAATAAAATTCA
1 TTATTCTAATAAAATTCA
835377 TTATTCTAATAAAATTC
1 TTATTCTAATAAAATTC
835394 CCCTCTAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
TTATTCTAATAAAATTCA
Found at i:840646 original size:13 final size:13
Alignment explanation
Indices: 840628--840652 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
840618 CAAAGATCAG
840628 TGTATCGATACAA
1 TGTATCGATACAA
840641 TGTATCGATACA
1 TGTATCGATACA
840653 TTTGAGTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:840719 original size:19 final size:18
Alignment explanation
Indices: 840695--840792 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
840685 TAGCTTAAAT
840695 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
840714 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
840727 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
840746 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
840759 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
840779 TGTATCGATACAAA
1 TGTATCGATACAAA
840793 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:840732 original size:13 final size:13
Alignment explanation
Indices: 840714--840770 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
840704 ACAAAACTTA
840714 TGTATCGATACAT
1 TGTATCGATACAT
840727 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
840745 ATGTATCGATACAT
1 -TGTATCGATACAT
840759 TGTATCGATACA
1 TGTATCGATACA
840771 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:840734 original size:32 final size:32
Alignment explanation
Indices: 840693--840790 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
840683 AGTAGCTTAA
*
840693 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
840725 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
840757 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
840790 A
1 A
840791 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:844144 original size:52 final size:52
Alignment explanation
Indices: 844062--844183 Score: 226
Period size: 52 Copynumber: 2.3 Consensus size: 52
844052 TGAAAAGTTA
*
844062 CCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTG
1 CCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTG
*
844114 CCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTG
1 CCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTG
844166 CCTGCATGTATCGATACA
1 CCTGCATGTATCGATACA
844184 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (52 bp):
CCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTG
Found at i:844196 original size:52 final size:51
Alignment explanation
Indices: 844062--844203 Score: 214
Period size: 52 Copynumber: 2.7 Consensus size: 51
844052 TGAAAAGTTA
844062 CCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTG
1 CCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTG
* *
844114 CCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTG
1 CCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTG
*
844166 CCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
844204 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 81 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTG
Done.