Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2744988
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 17
Found at i:844210 original size:13 final size:13
Alignment explanation
Indices: 844192--844216 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
844182 CAAAGATCAG
844192 TGTATCGATACAA
1 TGTATCGATACAA
844205 TGTATCGATACA
1 TGTATCGATACA
844217 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:844283 original size:19 final size:19
Alignment explanation
Indices: 844259--844323 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
844249 TAGCTTAAAT
844259 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
844278 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
844291 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
*
844310 TGTATAGATACAAA
1 TGTATCGATACAAA
844324 TCGTTGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:844296 original size:13 final size:13
Alignment explanation
Indices: 844278--844302 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
844268 ACAAAACTTA
844278 TGTATCGATACAT
1 TGTATCGATACAT
844291 TGTATCGATACA
1 TGTATCGATACA
844303 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:844298 original size:32 final size:32
Alignment explanation
Indices: 844257--844321 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
844247 AGTAGCTTAA
*
844257 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTATGTATAGATAC
*
844289 ATTGTATCGATACAACACTTATGTATAGATAC
1 ATTGTATCGATACAAAACTTATGTATAGATAC
844321 A
1 A
844322 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (32 bp):
ATTGTATCGATACAAAACTTATGTATAGATAC
Found at i:847691 original size:52 final size:52
Alignment explanation
Indices: 847606--847730 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
847596 ATATGAAAAG
* *
847606 TTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
847658 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
847710 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
847731 AAGATCAATG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:847741 original size:52 final size:52
Alignment explanation
Indices: 847606--847750 Score: 204
Period size: 52 Copynumber: 2.8 Consensus size: 52
847596 ATATGAAAAG
* * *
847606 TTGCCTACATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TAAGATAATGTATCGATACATCTGGGCAAAT
***
847658 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
847710 TTGCCTGCATGTATCGATACA-AAGATCAATGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AATGTATCGATACA
847751 ATTTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 4 0.05
52 81 0.95
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
Found at i:847843 original size:13 final size:13
Alignment explanation
Indices: 847825--847849 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
847815 ACAAAACTTA
847825 TGTATCGATACAT
1 TGTATCGATACAT
847838 TGTATCGATACA
1 TGTATCGATACA
847850 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:847845 original size:32 final size:33
Alignment explanation
Indices: 847804--847869 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
847794 AGTAGCTTAA
847804 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
*
847836 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
847869 A
1 A
847870 AATCGCTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:848236 original size:93 final size:93
Alignment explanation
Indices: 848077--848262 Score: 291
Period size: 93 Copynumber: 2.0 Consensus size: 93
848067 CCGCTGGCGC
* * *
848077 CGGCGAATTTGTCCCCACATACGTCAAATCTTCCACCTACTAGCTAGGCCTCAAATTGTCGAAAA
1 CGGCGAATTCGTCCCCACATACGTCAAATCTTCCACCTACTAGCTAGACCTCAAATTGTCAAAAA
* * *
848142 TTGGGCCGGACAAAATGAGGTGTCTACA
66 TTGGCCCGGACAAAATGAAGTGACTACA
* * *
848170 CGGCGAATTCGTCCCCACATACGTCGAATCTTCCACCTACTGGCTAGACCTTAAATTGTCAAAAA
1 CGGCGAATTCGTCCCCACATACGTCAAATCTTCCACCTACTAGCTAGACCTCAAATTGTCAAAAA
848235 TTGGCCCGGACAAAATGAAGTGACTACA
66 TTGGCCCGGACAAAATGAAGTGACTACA
848263 TTTATTTTTC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
CGGCGAATTCGTCCCCACATACGTCAAATCTTCCACCTACTAGCTAGACCTCAAATTGTCAAAAA
TTGGCCCGGACAAAATGAAGTGACTACA
Found at i:851572 original size:88 final size:87
Alignment explanation
Indices: 851434--851625 Score: 264
Period size: 88 Copynumber: 2.2 Consensus size: 87
851424 TTCCTCTGAA
* *
851434 GGGATACTCCAACCCCGCTTTAACAAAATTCCAATTTTCCTTCATGTAATTTTATACTT-AGGGA
1 GGGATACTCCAACCCCGATTTAACAAAATTCAAATTTTCCTTCATGTAATTTTATACTTGA-GGA
851498 AACTCCATCCCTACTATTCCGAG
65 AACTCCATCCCTACTATTCCGAG
* * *
851521 GGGATACTCCAACCTC-ATTCTAACGAAAATTCAAATTTAT-CTTCATTTAATTTTATCCTTGAG
1 GGGATACTCCAACCCCGATT-TAAC-AAAATTCAAATTT-TCCTTCATGTAATTTTATACTTGAG
851584 GAAACTCCATCCCTACTATTCCGAG
63 GAAACTCCATCCCTACTATTCCGAG
* *
851609 TGGATATTCCAACCCCG
1 GGGATACTCCAACCCCG
851626 TTCTCTCAAA
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
86 2 0.02
87 19 0.21
88 69 0.75
89 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.32
Consensus pattern (87 bp):
GGGATACTCCAACCCCGATTTAACAAAATTCAAATTTTCCTTCATGTAATTTTATACTTGAGGAA
ACTCCATCCCTACTATTCCGAG
Found at i:860066 original size:20 final size:20
Alignment explanation
Indices: 860038--860111 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 20
860028 TTTTACCTAG
*
860038 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTCA
* * * *
860058 ATGTGTCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
860078 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
*
860098 ATGTATCTATACAT
1 ATGTATCGATACAT
860112 CTAGTTAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:864011 original size:79 final size:79
Alignment explanation
Indices: 863896--864286 Score: 385
Period size: 79 Copynumber: 4.9 Consensus size: 79
863886 CATTTCCTAA
* * * * *
863896 TGAAAAATTTAATATTTTGGAGATAAAAACGA-GGTTGGAGTATCCCCTCGAAAATAACGGGGTT
1 TGAAAAA-TTGATGTTTTGGAAAT-AAAACTAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTT
*
863960 GGAGTATCCTGGATGG
64 GGAGTATCCTCGATGG
** * * * *
863976 TGAAAAATCAATGTTTTGGAAATAAAACTAGGGTTGGAGTATCTCCTTGAAAATAACGGGGTTAG
1 TGAAAAATTGATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGG
* *
864041 AGTATCTTCGATTG
66 AGTATCCTCGATGG
* * * * * * * * *
864055 TGGAAAATCGATGCTTTAGAAATAAAGCCAAGGTTGGAGTATCCCC-CTAGAAATAATAGGGTTG
1 TGAAAAATTGATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCGA-AAATAACAGGGTTG
* *
864119 GAGTATCTTTGATGG
65 GAGTATCCTCGATGG
* * * ** **
864134 CGAAAAATTGGTGTTTTTGAAATAAAA-TCAGGGTTGGAGTATTTCCTAAAAAATAACAGGGTTG
1 TGAAAAATTGATGTTTTGGAAATAAAACT-AGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTG
* *
864198 GAGTATCCCCGATTG
65 GAGTATCCTCGATGG
*
864213 TGAAAAATTGGTGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTC-AGAAATAACAGGGTTG
1 TGAAAAATTGATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCGA-AAATAACAGGGTTG
*
864277 GAGTAACCTC
65 GAGTATCCTC
864287 TGTCGCGATG
Statistics
Matches: 255, Mismatches: 50, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
78 8 0.03
79 238 0.93
80 9 0.04
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (79 bp):
TGAAAAATTGATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGG
AGTATCCTCGATGG
Found at i:864211 original size:158 final size:157
Alignment explanation
Indices: 863918--864281 Score: 442
Period size: 158 Copynumber: 2.3 Consensus size: 157
863908 TATTTTGGAG
* * * * *
863918 ATAAAAACGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTGGATGGTGAAAAA
1 ATAAAACCAAGGTTGGAGTATCCCCTAG-AAATAACAGGGTTGGAGTATCCTGGATGGCGAAAAA
** * *
863983 TCAATGTTTTGGAAATAAAACTAGGGTTGGAGTATCTCCTTGAAAATAACGGGGTTAGAGTATCT
65 TCAATGTTTTGGAAATAAAACTAGGGTTGGAGTATCTCCTAAAAAATAACAGGGTTAGAGTATCC
* *
864048 TCGATTGTGGAAAATCGATGCTTTAGAA
130 CCGATTGTGAAAAATCGATGCTTTAGAA
* * * *
864076 ATAAAGCCAAGGTTGGAGTATCCCCCTAGAAATAATAGGGTTGGAGTATCTTTGATGGCGAAAAA
1 ATAAAACCAAGGTTGGAGTAT-CCCCTAGAAATAACAGGGTTGGAGTATCCTGGATGGCGAAAAA
*** * * *
864141 TTGGTGTTTTTGAAATAAAA-TCAGGGTTGGAGTATTTCCTAAAAAATAACAGGGTTGGAGTATC
65 TCAATGTTTTGGAAATAAAACT-AGGGTTGGAGTATCTCCTAAAAAATAACAGGGTTAGAGTATC
* * * *
864205 CCCGATTGTGAAAAATTGGTGTTTTGGAA
129 CCCGATTGTGAAAAATCGATGCTTTAGAA
* *
864234 ATAAAACTAGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGGAGTA
1 ATAAAACCAAGGTTGGAGTATCCCCT-AGAAATAACAGGGTTGGAGTA
864282 ACCTCTGTCG
Statistics
Matches: 174, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 6 0.03
158 162 0.93
159 6 0.03
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (157 bp):
ATAAAACCAAGGTTGGAGTATCCCCTAGAAATAACAGGGTTGGAGTATCCTGGATGGCGAAAAAT
CAATGTTTTGGAAATAAAACTAGGGTTGGAGTATCTCCTAAAAAATAACAGGGTTAGAGTATCCC
CGATTGTGAAAAATCGATGCTTTAGAA
Found at i:865046 original size:13 final size:13
Alignment explanation
Indices: 865028--865053 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
865018 ACAAAGATCC
865028 ATGTATCGATACA
1 ATGTATCGATACA
865041 ATGTATCGATACA
1 ATGTATCGATACA
865054 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:865049 original size:33 final size:33
Alignment explanation
Indices: 865007--865073 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
864997 AAAATTTCCA
***
865007 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
865040 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
865073 A
1 A
865074 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:865137 original size:32 final size:32
Alignment explanation
Indices: 865096--865158 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
865086 TAGCTAATTA
*
865096 TGTATCGATACAATACTTATGTATCAATACAT
1 TGTATCGATACAAAACTTATGTATCAATACAT
*
865128 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCAATACA
865159 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCAATACAT
Found at i:865160 original size:19 final size:19
Alignment explanation
Indices: 865093--865160 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
865083 CAGTAGCTAA
*
865093 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
*
865112 TTATGTATCAATAC---A-
1 TTATGTATCGATACAAAAC
865127 -T-TGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
865144 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
865161 TTGTTGAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 10 0.24
14 1 0.02
16 2 0.05
18 1 0.02
19 27 0.66
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:865239 original size:21 final size:21
Alignment explanation
Indices: 865215--865272 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
865205 ACATTTGTAG
*
865215 AATGTATTGATACATTCCACA
1 AATGTATCGATACATTCCACA
*
865236 AATGTATCGATACATTCTACA
1 AATGTATCGATACATTCCACA
*
865257 AATATATCGATACATT
1 AATGTATCGATACATT
865273 TGGATAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (21 bp):
AATGTATCGATACATTCCACA
Found at i:866224 original size:29 final size:29
Alignment explanation
Indices: 866144--866225 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 29
866134 GACTGGAAAA
*
866144 TGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
** *
866173 TGTCCTGC-TCTT-TG-GGGAC--TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTGAAAGG
866199 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAA
866226 AGAAAAAGCA
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
25 3 0.08
26 11 0.28
27 6 0.15
28 6 0.15
29 10 0.26
30 3 0.08
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:866312 original size:59 final size:59
Alignment explanation
Indices: 866010--866839 Score: 1018
Period size: 59 Copynumber: 14.4 Consensus size: 59
866000 AAAAAGTGTA
* * * * *
866010 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
866065 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** *
866120 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----AAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
866175 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
866236 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACATGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
866295 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
866354 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAATTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** * *
866408 TCCTGCTCTCTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
866463 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
866518 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
866579 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTCGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
866638 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
866697 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
866756 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
866815 TCCCGCTCTTTGAGGACTGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTG
866840 GAAGGAGAAG
Statistics
Matches: 700, Mismatches: 51, Indels: 44
0.88 0.06 0.06
Matches are distributed among these distances:
53 1 0.00
54 22 0.03
55 256 0.37
56 1 0.00
57 4 0.01
59 319 0.46
60 51 0.07
61 46 0.07
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:866659 original size:343 final size:342
Alignment explanation
Indices: 866033--866804 Score: 1307
Period size: 343 Copynumber: 2.2 Consensus size: 342
866023 GGAGTAAAAA
* *
866033 GTGCCACCAACTCGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCA
1 GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCA
*
866097 ACTTGTGTGAGCTTTAAGAGGTGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGG
65 ACTTGTGTGGGCTTTAA-AGGTGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGG
*
866162 GCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA
129 GCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA
866227 GAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACATGGGTGGGCTTTAAAAGAAAAG
194 GAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACATGGGTGGGCTTTAAAAGAAAAG
* *
866292 GCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGTGTCC
259 GCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
866357 CGCTCTTTGAGGACTGAAG
324 CGCTCTTTGAGGACTGAAG
* * * * *
866376 GTGCCACCAATTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTCTGAGGACTGGAAAATGCCACTA
1 GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCA
*
866440 ACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGG
65 ACTTGTGTGGGCTTT-AAAGGTGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGG
*
866505 GCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA
129 GCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA
866570 GAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAAC-TCGGGTGGGCTTTAAAAGAAAA
194 GAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACAT-GGGTGGGCTTTAAAAGAAAA
866634 GGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
258 GGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
866699 CCGCTCTTTGAGGACTGAAG
323 CCGCTCTTTGAGGACTGAAG
* *
866719 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCA
1 GTGCCACCAACTTGTGTGGGCTTT-AAAG---AGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCA
866784 CCAACTTGTGTGGGCTTTAAA
62 CCAACTTGTGTGGGCTTTAAA
866805 AGAAAAGGCA
Statistics
Matches: 401, Mismatches: 19, Indels: 15
0.92 0.04 0.03
Matches are distributed among these distances:
342 3 0.01
343 341 0.85
344 6 0.01
345 3 0.01
346 3 0.01
347 25 0.06
348 20 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (342 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAA
CTTGTGTGGGCTTTAAAGGTGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGC
TTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA
AAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACATGGGTGGGCTTTAAAAGAAAAGGC
GTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
CTCTTTGAGGACTGAAG
Found at i:867835 original size:17 final size:18
Alignment explanation
Indices: 867813--867864 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 18
867803 TTCTTTTCTC
867813 TCTTTTT-CTTTGTTTTG
1 TCTTTTTGCTTTGTTTTG
*
867830 TCTTTTTGTTTTGTTTT-
1 TCTTTTTGCTTTGTTTTG
* * *
867847 TTTTTTTGGTTTTTTTTG
1 TCTTTTTGCTTTGTTTTG
867865 AAGAGAAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 21 0.72
18 8 0.28
ACGTcount: A:0.00, C:0.06, G:0.13, T:0.81
Consensus pattern (18 bp):
TCTTTTTGCTTTGTTTTG
Found at i:867839 original size:13 final size:12
Alignment explanation
Indices: 867821--867861 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
867811 TCTCTTTTTC
867821 TTTGTTTTGTCTT
1 TTTGTTTTGT-TT
867834 TTTGTTTTGTTT
1 TTTGTTTTGTTT
*
867846 TTTTTTTTGGTTT
1 TTTGTTTT-GTTT
867859 TTT
1 TTT
867862 TTGAAGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (12 bp):
TTTGTTTTGTTT
Found at i:867842 original size:18 final size:19
Alignment explanation
Indices: 867821--867864 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
867811 TCTCTTTTTC
867821 TTTGTTTTGTCTTTTT-GT
1 TTTGTTTTGTCTTTTTGGT
*
867839 TTTGTTTT-TTTTTTTGGT
1 TTTGTTTTGTCTTTTTGGT
867857 TTT-TTTTG
1 TTTGTTTTG
867865 AAGAGAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (19 bp):
TTTGTTTTGTCTTTTTGGT
Found at i:880463 original size:52 final size:51
Alignment explanation
Indices: 880400--880737 Score: 185
Period size: 52 Copynumber: 6.4 Consensus size: 51
880390 GAAATAACGA
* *
880400 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATTG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCG
** * ** * *
880451 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCG
1 G-GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATCG
* * *
880503 GGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAATCGG
1 GG-TTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATC-G
* **** * *
880556 GGTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATC-G
880611 GGTTGGAGTATCCCCGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGATTGTGAA-AAATTGGTA-TTTTTGGAAATAAAATCG
* * * * *
880664 GAGTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCG
1 G-GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCG
*
880715 GAGTTGGAATATCCCCGATTGTG
1 G-GTTGGAGTATCCCCGATTGTG
880738 GAGAATTGAG
Statistics
Matches: 217, Mismatches: 42, Indels: 55
0.69 0.13 0.18
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 2 0.01
51 37 0.17
52 79 0.36
53 35 0.16
54 27 0.12
55 19 0.09
56 2 0.01
57 4 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCG
Found at i:880523 original size:104 final size:103
Alignment explanation
Indices: 880402--880737 Score: 299
Period size: 104 Copynumber: 3.2 Consensus size: 103
880392 AATAACGAGG
* *
880402 TTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATTGGAGTTGGAGTATCCCC
1 TTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
*
880467 GATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGA
66 GATTAAAGGAAAATTGGAGTTTTGAAAATAAAA-CGGGA
* * * *
880506 TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAATCGGGGTTGGAGTATCC
1 TTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGAGTTGGAGTAT-C
* * ** ** ** * *
880569 CCTCGGAAATAACGG--GGTTGGAGTATCCCCGATGAT-TAACGGGG
63 CC-C-G-ATTAAAGGAAAATTGGAGT-T--TTGAAAATAAAACGGGA
*
880613 TTGGAGTATCCCCGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCGGAGTTAGAGTATCC
1 TTGGAGTATCCCCGATTGTGAA-AAATTGGTA-TTTTTGGAAATAAAATCGGAGTTGGAGTATCC
* * *
880678 CCGATTATA-GAAAATTAGTGTTTTGAAAATAAAATC-GGA
64 CCGATTAAAGGAAAATTGGAGTTTTGAAAATAAAA-CGGGA
*
880717 GTTGGAATATCCCCGATTGTG
1 -TTGGAGTATCCCCGATTGTG
880738 GAGAATTGAG
Statistics
Matches: 178, Mismatches: 36, Indels: 35
0.71 0.14 0.14
Matches are distributed among these distances:
103 4 0.02
104 42 0.24
105 42 0.24
106 17 0.10
107 34 0.19
108 16 0.09
109 23 0.13
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (103 bp):
TTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
GATTAAAGGAAAATTGGAGTTTTGAAAATAAAACGGGA
Found at i:880616 original size:27 final size:28
Alignment explanation
Indices: 880553--880628 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
880543 GCGATAAAAT
***
880553 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
880581 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
880608 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
880629 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:880661 original size:213 final size:212
Alignment explanation
Indices: 880335--880739 Score: 618
Period size: 213 Copynumber: 1.9 Consensus size: 212
880325 ATCAGAAATA
* *
880335 AAAATCGGGATTGGAGTATCCCTTCGGAAGTAACGGGATTAGAGTATCCCCGATTGAAATAACGA
1 AAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGATTAGAGTATCCCCGATTGAAATAACGA
* * *
880400 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATTGGAGTTGGAGTATCC
66 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATCC
* *
880465 CCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGG-GATTGGAGTATCCCCGATTGTGGAA
131 CCGATTAAA-GAAAATTAGCGTTTTGAAAATAAAACCGGAG-TTGGAATATCCCCGATTGTGGAA
880529 AAATTAGTGTTTTAGCGAT
194 AAATTAGTGTTTTAGCGAT
* * * * *
880548 AAAATCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA-TG-ATTAACGG
1 AAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGATTAGAGTATCCCCGATTGAAATAACGA
880611 GGTTGGAGTATCCCCGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCGGAGTTAGAGTAT
66 GGTTGGAGTATCCCCGATTGTGAA-AAATTGGTA-TTTTTGGAAATAAAATCGGAGTTAGAGTAT
* * *
880676 CCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
129 CCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGA
880740 GAATTGAGAA
Statistics
Matches: 174, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
211 29 0.17
212 58 0.33
213 87 0.50
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (212 bp):
AAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGATTAGAGTATCCCCGATTGAAATAACGA
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATCC
CCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAA
ATTAGTGTTTTAGCGAT
Found at i:883104 original size:13 final size:13
Alignment explanation
Indices: 883086--883111 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
883076 ACAAAGATCC
883086 ATGTATCGATACA
1 ATGTATCGATACA
883099 ATGTATCGATACA
1 ATGTATCGATACA
883112 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:883107 original size:33 final size:33
Alignment explanation
Indices: 883065--883131 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
883055 AAAATTTCCA
***
883065 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
883098 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
883131 A
1 A
883132 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:883175 original size:19 final size:18
Alignment explanation
Indices: 883151--883218 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
883141 CAGTAGCTAA
883151 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
883170 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
883185 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
883202 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
883219 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:883191 original size:13 final size:13
Alignment explanation
Indices: 883173--883197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
883163 ACAATACTTA
883173 TGTATCGATACAT
1 TGTATCGATACAT
883186 TGTATCGATACA
1 TGTATCGATACA
883198 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:883195 original size:32 final size:32
Alignment explanation
Indices: 883154--883216 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
883144 TAGCTAATTA
*
883154 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
883186 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
883217 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:883280 original size:21 final size:20
Alignment explanation
Indices: 883254--883332 Score: 95
Period size: 21 Copynumber: 3.8 Consensus size: 20
883244 GTTGGGACCC
883254 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGTA-AA
***
883275 TGTATCGATACATTCCACAAA
1 TGTATCGATACATT-TGTAAA
*
883296 TGTATCGATACATTCTATAAA
1 TGTATCGATACATT-TGTAAA
883317 TGTATCGATACATTTG
1 TGTATCGATACATTTG
883333 GATAATTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
20 1 0.02
21 49 0.96
22 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATTTGTAAA
Found at i:884254 original size:26 final size:26
Alignment explanation
Indices: 884225--884312 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
884215 GTGGGCTTTA
884225 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
*
884251 AAAGGTGTCAC--CAACTTGTGTGGG-CTTTG
1 AAAGGTGTC-CTGC-TCTT-TG-GGGAC--TG
* *
884280 AAAGGGGTCCTGCTCTTTGGGGATTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
884306 AAAGGTG
1 AAAGGTG
884313 CCACCAACTT
Statistics
Matches: 48, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
25 1 0.02
26 20 0.42
27 7 0.15
28 6 0.12
29 13 0.27
30 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.35, T:0.30
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:884424 original size:59 final size:59
Alignment explanation
Indices: 884067--884608 Score: 640
Period size: 59 Copynumber: 9.4 Consensus size: 59
884057 AAAAAGTGTA
* * * * *
884067 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
884122 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** *
884177 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----AAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
884232 TCCTGCTCTTTGGGGACTGAAAGGTGTCACCAACTTGTGTGGGCTTT----G-AAAGGGG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
884287 TCCTGCTCTTTGGGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
884348 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTTGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
884407 TCCCGCTCTTTGAGGACTGAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
884466 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
884525 T-CTCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCT-GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
884584 TCCCGCTCTTTGAGGACTGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTG
884609 GAAGGAGAAG
Statistics
Matches: 432, Mismatches: 38, Indels: 30
0.86 0.08 0.06
Matches are distributed among these distances:
54 1 0.00
55 183 0.42
56 1 0.00
57 1 0.00
58 1 0.00
59 197 0.46
60 27 0.06
61 21 0.05
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:885604 original size:17 final size:18
Alignment explanation
Indices: 885582--885615 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
885572 TTCTTTTCTC
885582 TCTTTTT-CTTTGTTTTG
1 TCTTTTTGCTTTGTTTTG
*
885599 TCTTTTTGTTTTGTTTT
1 TCTTTTTGCTTTGTTTT
885616 TTTTTGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.00, C:0.09, G:0.12, T:0.79
Consensus pattern (18 bp):
TCTTTTTGCTTTGTTTTG
Found at i:885608 original size:13 final size:12
Alignment explanation
Indices: 885590--885628 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
885580 TCTCTTTTTC
885590 TTTGTTTTGTCTT
1 TTTGTTTTGT-TT
885603 TTTGTTTTGTTT
1 TTTGTTTTGTTT
*
885615 TTT-TTTGGTTT
1 TTTGTTTTGTTT
885626 TTT
1 TTT
885629 TTGAAGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.40
12 5 0.20
13 10 0.40
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (12 bp):
TTTGTTTTGTTT
Found at i:898206 original size:52 final size:50
Alignment explanation
Indices: 898146--898316 Score: 146
Period size: 52 Copynumber: 3.3 Consensus size: 50
898136 GAAATAACGA
* * * *
898146 GGTTAGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCG
1 GGTTAGAGTATCCTCGATTATGAAAAATTGG-AGTTTTGAAAATAAAACCG
* * * *
898197 GAGTTAGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCG
1 G-GTTAGAGTATCCTCGATT-ATGAAAAATTGGAGTTTTGAAAATAAAACCG
* * * **
898249 GGATTGGAGTATCCTCGATTATGGAAAAATTAGTGTTTT-AGCGATAAAACCGG
1 GG-TTAGAGTATCCTCGATTAT-GAAAAATTGGAGTTTTGA-AAATAAAACC-G
*
898302 GGTTGGAGTATCCTC
1 GGTTAGAGTATCCTC
898317 TCGGAAATAA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
51 4 0.04
52 82 0.84
53 12 0.12
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (50 bp):
GGTTAGAGTATCCTCGATTATGAAAAATTGGAGTTTTGAAAATAAAACCG
Found at i:900363 original size:20 final size:20
Alignment explanation
Indices: 900336--900390 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
900326 GTAAAATTCC
*
900336 AAATGTATCGATACAAAGAT
1 AAATGTATCGATACAAAGAA
** *
900356 CCATGTATCGATACACAGAA
1 AAATGTATCGATACAAAGAA
900376 AAATGTATCGATACA
1 AAATGTATCGATACA
900391 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (20 bp):
AAATGTATCGATACAAAGAA
Found at i:900434 original size:19 final size:18
Alignment explanation
Indices: 900410--900477 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
900400 CAGTAGCTAA
900410 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
900429 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
900444 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
900461 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
900478 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:900450 original size:13 final size:13
Alignment explanation
Indices: 900432--900456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
900422 ACAATACTTA
900432 TGTATCGATACAT
1 TGTATCGATACAT
900445 TGTATCGATACA
1 TGTATCGATACA
900457 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:900454 original size:32 final size:32
Alignment explanation
Indices: 900413--900475 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
900403 TAGCTAATTA
*
900413 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
900445 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
900476 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:900539 original size:21 final size:22
Alignment explanation
Indices: 900513--900570 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
900503 GTTGGGACCC
*
900513 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACATTTGTACAAA
*
900534 TGTATCGATACA-TTCTACAAA
1 TGTATCGATACATTTGTACAAA
*
900555 TGTATCGATAAATTTG
1 TGTATCGATACATTTG
900571 GATAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 4 0.13
21 25 0.81
22 2 0.06
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (22 bp):
TGTATCGATACATTTGTACAAA
Found at i:901389 original size:55 final size:55
Alignment explanation
Indices: 901305--902189 Score: 974
Period size: 55 Copynumber: 15.5 Consensus size: 55
901295 AAAAAGTGTA
* * * * * *
901305 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGAGCTTTG-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* *
901360 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* ** *
901415 TCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* *
901470 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGGG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* *
901525 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-----GCG
*
901586 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* * *
901645 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* * * * *
901704 TCCCGCTCTTTGAGGAATGAAGGTGGCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* ** *
901758 TCCTGCTCTCTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* ** *
901813 TCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
*
901868 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-----GCG
* *
901929 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTCGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
*
901988 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
*
902047 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* *
902106 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
*
902165 TCCCGCTCTTTGAGGACTGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTG
902190 GAAGGAGAAG
Statistics
Matches: 752, Mismatches: 52, Indels: 48
0.88 0.06 0.06
Matches are distributed among these distances:
54 22 0.03
55 319 0.42
56 8 0.01
59 301 0.40
60 51 0.07
61 39 0.05
64 12 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
Found at i:901492 original size:26 final size:26
Alignment explanation
Indices: 901463--901550 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
901453 GTGGGCTTTA
901463 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
901489 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
901518 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
901544 AAAGGTG
1 AAAGGTG
901551 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:901665 original size:59 final size:59
Alignment explanation
Indices: 901353--902189 Score: 1068
Period size: 59 Copynumber: 14.5 Consensus size: 59
901343 GTGAGCTTTG
901353 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG-
1 AAAGGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* * **
901410 --AGGTGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT-----A
1 AAAGGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* *
901463 AAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-
1 AAAGGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* *
901518 AAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGA
* * *
901579 AAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
*
901638 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* * * * *
901697 AAATGTGTCCCGCTCTTTGAGGAATGAAGGTGGCACCAACTTGTGTGGGCTTT--AAG-
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* * **
901753 --AGGTGTCCTGCTCTCTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----G-
1 AAAGGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* * **
901806 AAAGGTGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-
1 AAAGGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
*
901861 AAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGA
* * * *
901922 AAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTCGGGTGGGCTTTAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
*
901981 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
*
902040 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
*
902099 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* *
902158 AAAGGCATCCCGCTCTTTGAGGACTGAAGGTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTG
902190 GAAGGAGAAG
Statistics
Matches: 714, Mismatches: 46, Indels: 38
0.89 0.06 0.05
Matches are distributed among these distances:
53 1 0.00
54 20 0.03
55 273 0.38
57 3 0.00
59 319 0.45
60 53 0.07
61 45 0.06
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (59 bp):
AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
Found at i:902013 original size:343 final size:342
Alignment explanation
Indices: 901353--902156 Score: 1358
Period size: 343 Copynumber: 2.3 Consensus size: 342
901343 GTGAGCTTTG
*
901353 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCC
1 AAAGGCGTCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCC
* *
901418 TGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGG
65 TGCTCTTTGAGGACTG-AAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGA
* *
901483 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
129 GGACTGAAAGATGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGAGGACTGAAAG
901548 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCC
194 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCC
*
901613 ACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAAC
259 ACCAACTCGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAAC
901678 TTGTGTGGGCTTTAAAAGA
324 TTGTGTGGGCTTTAAAAGA
* * * *
901697 AAATGTGTCCCGCTCTTTGAGGAATGAAGGTGGCACCAACTTGTGTGGGCTTTAAGAGGTGTCCT
1 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCT
* * *
901762 GCTCTCTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCTTGCTCTTTGAG
66 GCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAG
*
901827 GACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
130 GACT-GAAAGATGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGAGGACTGAAAG
901891 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCC
194 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCC
901956 ACCAACTCGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAAC
259 ACCAACTCGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAAC
902021 TTGTGTGGGCTTTAAAAGA
324 TTGTGTGGGCTTTAAAAGA
*
902040 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
1 AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGT
* **
902105 GTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
61 GTCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
902157 AAAAGGCATC
Statistics
Matches: 429, Mismatches: 24, Indels: 11
0.92 0.05 0.02
Matches are distributed among these distances:
343 349 0.81
344 27 0.06
345 3 0.01
347 30 0.07
348 20 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (342 bp):
AAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCT
GCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGG
ACTGAAAGATGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGAGGACTGAAAGGT
GCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAGGTGCCAC
CAACTCGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTT
GTGTGGGCTTTAAAAGA
Found at i:903185 original size:17 final size:18
Alignment explanation
Indices: 903163--903196 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
903153 TTTTTTTCTC
903163 TCTTTTT-CTTTGTTTTG
1 TCTTTTTGCTTTGTTTTG
*
903180 TCTTTTTGTTTTGTTTT
1 TCTTTTTGCTTTGTTTT
903197 TTTTTTGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.00, C:0.09, G:0.12, T:0.79
Consensus pattern (18 bp):
TCTTTTTGCTTTGTTTTG
Found at i:903187 original size:13 final size:12
Alignment explanation
Indices: 903171--903214 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
903161 TCTCTTTTTC
903171 TTTGTTTTGTCTT
1 TTTGTTTTGT-TT
903184 TTTGTTTTGTTT
1 TTTGTTTTGTTT
*
903196 TTT-TTTTGGTT
1 TTTGTTTTGTTT
903207 TTT-TTTTG
1 TTTGTTTTG
903215 AAGAGAAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 15 0.50
12 5 0.17
13 10 0.33
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (12 bp):
TTTGTTTTGTTT
Found at i:906975 original size:237 final size:236
Alignment explanation
Indices: 906558--907055 Score: 633
Period size: 237 Copynumber: 2.1 Consensus size: 236
906548 TCAATTGTGA
* * *
906558 AAAATTGGTGTTTTTGAGAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAGCGGGGTTGGAG
1 AAAATTGGTATTTTAGA-AATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAG
* * * **
906623 TATCTCGATTGTGGAAAATCAGTGTTTTGGAAATAAAATCGAGGTTAGAGCATCCCCTCGAAAAT
65 TATCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAATCGAAATTAGAGCATCCCCTCGAAAAT
* * * * * *
906688 AATAGGGTTAGAGTATCCCTGATTATACAAGATCAATGTTCTGGAAATAAAATCTG-GGTTGGAG
130 AACAGGGTTAGAGTATCCCTGATTATACAAAATCAATGTTCTGAAAATAAAA-CCGAGATTGAAG
* * **
906752 TATCCCTTCAGAAATAATGGGGTTGGACTATCCCCGATGGTGG
194 TATCCCTTAAAAAATAACAGGGTTGGACTATCCCCGATGGTGG
* * * * *
906795 AAAATTGATATTTTAGAAATAAAATTGGGGTTGGAGTATCCCCTCGAAAGTAACGGGGTTGGAGT
1 AAAATTGGTATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGT
* * * *
906860 ATCCCCTATTGTGAAAAATCAATGTTTTGGAAATAAAATTGAAATTGGAGTATCCCCTCGAAAAT
66 AT-CCCGATTGTGAAAAATCAATGTTTTGGAAATAAAATCGAAATTAGAGCATCCCCTCGAAAAT
* * **
906925 AACGGGGTTGGAGTAT-CCTCGATTATGA-AAAATCTTTGTTCTGAAAATAAAACCGAGATTGAA
130 AACAGGGTTAGAGTATCCCT-GATTAT-ACAAAATCAATGTTCTGAAAATAAAACCGAGATTGAA
*
906988 GTATCCCTTAAAAAATAACAGGGTTGGAGTATCCCCGATGGTGG
193 GTATCCCTTAAAAAATAACAGGGTTGGACTATCCCCGATGGTGG
*
907032 AAAATCGGTATTTTAGAAATAAAA
1 AAAATTGGTATTTTAGAAATAAAA
907056 ACATGAAGGA
Statistics
Matches: 223, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
236 50 0.22
237 172 0.77
238 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (236 bp):
AAAATTGGTATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGT
ATCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAATCGAAATTAGAGCATCCCCTCGAAAATA
ACAGGGTTAGAGTATCCCTGATTATACAAAATCAATGTTCTGAAAATAAAACCGAGATTGAAGTA
TCCCTTAAAAAATAACAGGGTTGGACTATCCCCGATGGTGG
Found at i:907052 original size:79 final size:79
Alignment explanation
Indices: 906566--907055 Score: 471
Period size: 79 Copynumber: 6.2 Consensus size: 79
906556 GAAAAATTGG
* * *
906566 TGTTTTTGAGAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAGCGGGGTTGGAGTAT-CTCG
1 TGTTTTGGA-AATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCG
*
906630 ATTGTGGAAAATCAG
65 ATTGTGGAAAATCAA
* * * ** * *
906645 TGTTTTGGAAATAAAATCGAGGTTAGAGCATCCCCTCGAAAATAATAGGGTTAGAGTATCCCTGA
1 TGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGA
* ** *
906710 TTATACAAGATCAA
66 TTGTGGAAAATCAA
* * * * *
906724 TGTTCTGGAAATAAAATCTG-GGTTGGAGTATCCCTTCAGAAATAATGGGGTTGGACTATCCCCG
1 TGTTTTGGAAATAAAATC-GAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCG
* **
906788 ATGGTGGAAAATTGA
65 ATTGTGGAAAATCAA
* * * * * * *
906803 TATTTTAGAAATAAAATTGGGGTTGGAGTATCCCCTCGAAAGTAACGGGGTTGGAGTATCCCCTA
1 TGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGA
*
906868 TTGTGAAAAATCAA
66 TTGTGGAAAATCAA
* ** * *
906882 TGTTTTGGAAATAAAATTGAAATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCGA
1 TGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGA
* * **
906947 TTATGAAAAATCTT
66 TTGTGGAAAATCAA
* * * * * * * *
906961 TGTTCTGAAAATAAAACCGAGATTGAAGTATCCCTTAAAAAATAACAGGGTTGGAGTATCCCCGA
1 TGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGA
* **
907026 TGGTGGAAAATCGG
66 TTGTGGAAAATCAA
* *
907040 TATTTTAGAAATAAAA
1 TGTTTTGGAAATAAAA
907056 ACATGAAGGA
Statistics
Matches: 330, Mismatches: 78, Indels: 6
0.80 0.19 0.01
Matches are distributed among these distances:
78 44 0.13
79 285 0.86
80 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (79 bp):
TGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGA
TTGTGGAAAATCAA
Found at i:909391 original size:30 final size:30
Alignment explanation
Indices: 909343--909412 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
909333 TTGAGAAATA
* * *
909343 TATCTATACATTTGGGTAAAACTCAG-AATG
1 TATCGATACATCTAGGTAAAAC-CAGTAATG
*
909373 TATCGATACATCTAGGTAAAACCCGTAATG
1 TATCGATACATCTAGGTAAAACCAGTAATG
*
909403 TATTGATACA
1 TATCGATACA
909413 ATGAAGAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 2 0.06
30 32 0.94
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (30 bp):
TATCGATACATCTAGGTAAAACCAGTAATG
Found at i:910079 original size:61 final size:61
Alignment explanation
Indices: 909923--910420 Score: 493
Period size: 61 Copynumber: 8.1 Consensus size: 61
909913 AGGCGTCTTG
*
909923 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGGTTTTTTTTTAAAA--AAGAAGTGT-T
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGT-GGG-----CTTTAAAAGGAA-AAG-GTAT
*
909985 -CTG
58 CCTA
* * * ** *
909988 CTTTTTGGGGACTAGAAGGTGCCACTAACTTGTGTGGGCTTTCCAAGGAGAAA-GCATCCTA
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGTATCCTA
* * *
910049 CCCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA--TATGTCTA
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTAT-CCTA
* * * * *
910109 CTTTTTGAGGACT-GAAAAGTGCC-CCTAGCTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTG
1 CTCTTTGAGGACTAG-AAGGTGCCACC-AACTTGTGTGGGCTTTAAAAGGAAAAGGTATCCTA
* * *
910170 CTTTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAGGTGTCCTA
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTATCCTA
* * * * *
910230 CTTTTTGAGGACTA-AAAGTGCCACCAAATTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTG
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTATCCTA
* * * *
910290 CTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGATGTGTCCTG
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG--GTATCCTA
* *
910353 CTCTTTGAGGACTA-AA-GTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAGGACATCCTG
1 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG-TATCCTA
910412 CTCTTTGAG
1 CTCTTTGAG
910421 AACTGAAAGG
Statistics
Matches: 373, Mismatches: 43, Indels: 40
0.82 0.09 0.09
Matches are distributed among these distances:
58 1 0.00
59 56 0.15
60 97 0.26
61 156 0.42
62 8 0.02
63 20 0.05
64 3 0.01
65 32 0.09
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (61 bp):
CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTATCCTA
Found at i:910157 original size:121 final size:121
Alignment explanation
Indices: 909921--910430 Score: 606
Period size: 121 Copynumber: 4.2 Consensus size: 121
909911 AGAGGCGTCT
* *
909921 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGGTTTTTTTTTAAAA--AAGAA-GTG
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGT-GGG-----CTTTAAAAGGAA-AATGTG
* * * * * **
909983 TTCTGCTTTTTGGGGACTAGAAGGTGCCACTAACTTGTGTGGGCTTTCCAAGGAGAAA-GCATCC
59 TCCTACTTTTTGAGGACTA-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCC
* * * * *
910047 TACCCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATATGT-CTACT
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGTGTCCTACT
*
910111 TTTTGAGGACTGAAAAGTGCC-CCTAGCTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
66 TTTTGAGGACT-AAAAGTGCCACC-AACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* *
910168 TGCTTTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAGGTGTCCTACT
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGTGTCCTACT
* **
910232 TTTTGAGGACTAAAAGTGCCACCAAATTGTGTGGGCTTTAAAAGGAAAAGGTGTCC
66 TTTTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* *
910288 TGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGATGTGTCCTG
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAA-ATGTGTCCTA
*
910353 CTCTTTGAGGACT-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAGGACATCC
64 CTTTTTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG-CATCC
* *
910410 TGCTCTTTGAGAACTGAAAGG
1 TGCTCTTTGAGGACTGGAAGG
910431 ATAAAAGGTT
Statistics
Matches: 338, Mismatches: 34, Indels: 28
0.85 0.09 0.07
Matches are distributed among these distances:
120 103 0.30
121 117 0.35
122 61 0.18
123 20 0.06
125 3 0.01
126 34 0.10
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (121 bp):
TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGTGTCCTACT
TTTTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
Found at i:911427 original size:12 final size:12
Alignment explanation
Indices: 911405--911431 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
911395 GTTCTTTTCC
911405 TTTCTCTTTTTT
1 TTTCTCTTTTTT
911417 TTTCTCTTTTTT
1 TTTCTCTTTTTT
911429 TTT
1 TTT
911432 TGTTTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTCTCTTTTTT
Found at i:917992 original size:50 final size:50
Alignment explanation
Indices: 917880--917993 Score: 165
Period size: 50 Copynumber: 2.3 Consensus size: 50
917870 TACATTTCTC
* * *
917880 AATGTATCGATACATCTGGGTAAAACCCATAATGTATCGATACAATGAAA
1 AATGTATCGATACATCGGGGTAAAACCCAAAATGTATCCATACAATGAAA
* * *
917930 AATGTGTTGATACATCGGGGTAAAACCCAAAATGTATCCATACAATGAAG
1 AATGTATCGATACATCGGGGTAAAACCCAAAATGTATCCATACAATGAAA
*
917980 AATGCATCGATACA
1 AATGTATCGATACA
917994 AATTGTGGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.25
Consensus pattern (50 bp):
AATGTATCGATACATCGGGGTAAAACCCAAAATGTATCCATACAATGAAA
Found at i:922340 original size:44 final size:46
Alignment explanation
Indices: 922259--922351 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 46
922249 AGCTCCTTTC
* *
922259 AAAAATGAAAAAAGGTAAAAGCATAAAA-GGTAAAAAAAACACAAAA
1 AAAAATG-AAAAAGGTAAAAGCATAAAAGGGAAAAAAAAAAACAAAA
* *
922305 AAAAATG-AAAAGGTAAAATCA-AAAGGGGAACAAAAAAAAACAAAA
1 AAAAATGAAAAAGGTAAAAGCATAAAAGGGAA-AAAAAAAAACAAAA
922350 AA
1 AA
922352 TAAGGACATG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.07
44 16 0.39
45 15 0.37
46 7 0.17
ACGTcount: A:0.72, C:0.06, G:0.14, T:0.08
Consensus pattern (46 bp):
AAAAATGAAAAAGGTAAAAGCATAAAAGGGAAAAAAAAAAACAAAA
Found at i:923758 original size:32 final size:32
Alignment explanation
Indices: 923673--924055 Score: 278
Period size: 32 Copynumber: 11.9 Consensus size: 32
923663 AGTAGCATTT
* * *
923673 CTTTTTAAAGTCCATAACTCCGTGGCGATCTT-
1 CTTTTTTAAGTCCACAACTCCGTGGC-ACCTTC
923705 -TTTCTGTTAAAGTCCACAACTCCGTGGCACCTTC
1 CTTT-T-TT-AAGTCCACAACTCCGTGGCACCTTC
* **
923739 CTTTTTTAAGTCCATAACTCTATGGCACCTTC
1 CTTTTTTAAGTCCACAACTCCGTGGCACCTTC
* * *
923771 CCTTTTTAAGTTCACAACTCCATGGCAACCTT-
1 CTTTTTTAAGTCCACAACTCCGTGGC-ACCTTC
* *
923803 -TTTCTATGAAAGTCCACAACTCCATGGCACCTTC
1 CTTT-T-T-TAAGTCCACAACTCCGTGGCACCTTC
* * * *
923837 CCTTTTTACGTCCATAACTCCATGGCAACCTT-
1 CTTTTTTAAGTCCACAACTCCGTGGC-ACCTTC
*
923869 -TTTCTGTTAAAGTCCACAACTCCATGGCACCTTCC
1 CTTT-T-TT-AAGTCCACAACTCCGTGGCACCTT-C
923904 CTTTTTT-AGTCCACAACTCCGTGGCAACCTT-
1 CTTTTTTAAGTCCACAACTCCGTGGC-ACCTTC
923935 -TTTCTATTAAAGTCCACAAC-CC-TGTGCACCTTC
1 CTTT-T-TT-AAGTCCACAACTCCGTG-GCACCTTC
* * * *
923968 TTTTTTTAAGTCCATAACTCTGTGGTACCTT-
1 CTTTTTTAAGTCCACAACTCCGTGGCACCTTC
*
923999 CTTCTTTTAAGTCCACAACTCCGTGG-AAC--C
1 CTT-TTTTAAGTCCACAACTCCGTGGCACCTTC
*
924029 C--TTTTAAGTCCACAACTTCGTGGCACC
1 CTTTTTTAAGTCCACAACTCCGTGGCACC
924056 CTTTTAATTT
Statistics
Matches: 290, Mismatches: 30, Indels: 66
0.75 0.08 0.17
Matches are distributed among these distances:
27 21 0.07
28 2 0.01
30 4 0.01
31 22 0.08
32 119 0.41
33 43 0.15
34 70 0.24
35 6 0.02
36 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (32 bp):
CTTTTTTAAGTCCACAACTCCGTGGCACCTTC
Found at i:923816 original size:66 final size:66
Alignment explanation
Indices: 923714--924060 Score: 369
Period size: 66 Copynumber: 5.4 Consensus size: 66
923704 TTTTCTGTTA
* * *
923714 AAGTCCACAACTCCGTGGC-ACCTTCCTTT-T-TT-AAGTCCATAACTCTATGGCACCTTCCCTT
1 AAGTCCACAACTCCATGGCAACCTT--TTTCTATTAAAGTCCACAACTCCATGGCACCTTCCCTT
923775 TTT
64 TTT
* *
923778 AAGTTCACAACTCCATGGCAACCTTTTTCTATGAAAGTCCACAACTCCATGGCACCTTCCCTTTT
1 AAGTCCACAACTCCATGGCAACCTTTTTCTATTAAAGTCCACAACTCCATGGCACCTTCCCTTTT
923843 T
66 T
* * *
923844 ACGTCCATAACTCCATGGCAACCTTTTTCTGTTAAAGTCCACAACTCCATGGCACCTTCCCTTTT
1 AAGTCCACAACTCCATGGCAACCTTTTTCTATTAAAGTCCACAACTCCATGGCACCTTCCCTTTT
923909 T
66 T
* * **
923910 TAGTCCACAACTCCGTGGCAACCTTTTTCTATTAAAGTCCACAAC-CC-TGTGCACCTTCTTTTT
1 AAGTCCACAACTCCATGGCAACCTTTTTCTATTAAAGTCCACAACTCCATG-GCACCTTCCCTTT
923973 TT
65 TT
* ** * * * * *
923975 AAGTCCATAACTCTGTGG-TACCTTCTTCT-TTTAAGTCCACAACTCCGTGG-A---ACCC-TTT
1 AAGTCCACAACTCCATGGCAACCTTTTTCTATTAAAGTCCACAACTCCATGGCACCTTCCCTTTT
924033 T
66 T
* * *
924034 AAGTCCACAACTTCGTGGCACCCTTTT
1 AAGTCCACAACTCCATGGCAACCTTTT
924061 AATTTTGACA
Statistics
Matches: 243, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
59 19 0.08
60 6 0.02
63 17 0.07
64 32 0.13
65 38 0.16
66 131 0.54
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (66 bp):
AAGTCCACAACTCCATGGCAACCTTTTTCTATTAAAGTCCACAACTCCATGGCACCTTCCCTTTT
T
Found at i:923843 original size:98 final size:99
Alignment explanation
Indices: 923673--923901 Score: 291
Period size: 98 Copynumber: 2.3 Consensus size: 99
923663 AGTAGCATTT
* * * * * *
923673 CTTTTTAAAGTCCATAACTCCGTGGCGATCTTTTTCTGTTAAAGTCCACAACTCCGTGGCACCTT
1 CTTTTT-AAGTCCACAACTCCATGGC-ACCTTTTTCTATGAAAGTCCACAACTCCATGGCACCTT
* *
923738 CCTTTTTTAAGTCCATAACTCTATGGC-ACC-TTCC
64 CCCTTTTTAAGTCCATAACTCCATGGCAACCTTTCC
*
923772 CTTTTTAAGTTCACAACTCCATGGCAACCTTTTTCTATGAAAGTCCACAACTCCATGGCACCTTC
1 CTTTTTAAGTCCACAACTCCATGGC-ACCTTTTTCTATGAAAGTCCACAACTCCATGGCACCTTC
* **
923837 CCTTTTTACGTCCATAACTCCATGGCAACCTTTTT
65 CCTTTTTAAGTCCATAACTCCATGGCAACCTTTCC
* *
923872 CTGTTAAAGTCCACAACTCCATGGCACCTT
1 CTTTTTAAGTCCACAACTCCATGGCACCTT
923902 CCCTTTTTTA
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 74 0.66
99 14 0.12
100 24 0.21
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (99 bp):
CTTTTTAAGTCCACAACTCCATGGCACCTTTTTCTATGAAAGTCCACAACTCCATGGCACCTTCC
CTTTTTAAGTCCATAACTCCATGGCAACCTTTCC
Found at i:923915 original size:98 final size:98
Alignment explanation
Indices: 923677--923934 Score: 268
Period size: 98 Copynumber: 2.6 Consensus size: 98
923667 GCATTTCTTT
* * * * ** * * *
923677 TTAAAGTCCATAACTCCGTGGCGATCTTTTTCTGTTAAAGTCCACAACTCCGTGGCACCTTCCTT
1 TTAAAGTCCACAACTCCATGGCAACCTTTCCCTATGAAAGTCCACAACTCCGTGGCACCTTCCCT
* *
923742 TTTTAAGTCCATAACTCTATGGCACCTTCCCTT
66 TTTTAAGTCCATAACTCCATGGCACCTTCCCTG
* * ** *
923775 TTTAAGTTCACAACTCCATGGCAACCTTTTTCTATGAAAGTCCACAACTCCATGGCACCTTCCCT
1 TTAAAGTCCACAACTCCATGGCAACCTTTCCCTATGAAAGTCCACAACTCCGTGGCACCTTCCCT
* **
923840 TTTTACGTCCATAACTCCATGGCAACCTTTTTCTG
66 TTTTAAGTCCATAACTCCATGGC-ACC-TTCCCTG
* ***
923875 TTAAAGTCCACAACTCCATGGC-ACC-TTCCCTTTTTTAGTCCACAACTCCGTGGCAACCTT
1 TTAAAGTCCACAACTCCATGGCAACCTTTCCCTATGAAAGTCCACAACTCCGTGGC-ACCTT
923935 TTTCTATTAA
Statistics
Matches: 133, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
98 98 0.74
99 11 0.08
100 24 0.18
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (98 bp):
TTAAAGTCCACAACTCCATGGCAACCTTTCCCTATGAAAGTCCACAACTCCGTGGCACCTTCCCT
TTTTAAGTCCATAACTCCATGGCACCTTCCCTG
Found at i:924040 original size:27 final size:27
Alignment explanation
Indices: 924002--924062 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
923992 GTACCTTCTT
924002 CTTTTAAGTCCACAACTCCGTGGAACC
1 CTTTTAAGTCCACAACTCCGTGGAACC
* *
924029 CTTTTAAGTCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGAACC
924056 CTTTTAA
1 CTTTTAA
924063 TTTTGACAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGAACC
Found at i:924139 original size:32 final size:30
Alignment explanation
Indices: 924082--924172 Score: 94
Period size: 32 Copynumber: 2.9 Consensus size: 30
924072 CTACATGGCA
* *
924082 CCCTTTAAAGCC-CACAAGTCAGTGGCACC
1 CCCTCTAAAGCCACACAAGTCGGTGGCACC
*
924111 CTTCTCTAAAGACCACACAAGTCGGTGGCAACC
1 C-CCTCTAAAG-CCACACAAGTCGGTGGC-ACC
* *
924144 CCCTTTAAAGCCCACACAAGTTGGTGGCA
1 CCCTCTAAAG-CCACACAAGTCGGTGGCA
924173 TCTTTTCTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
29 1 0.02
30 7 0.14
31 3 0.06
32 36 0.71
33 4 0.08
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.19
Consensus pattern (30 bp):
CCCTCTAAAGCCACACAAGTCGGTGGCACC
Found at i:924213 original size:28 final size:28
Alignment explanation
Indices: 924077--924604 Score: 348
Period size: 28 Copynumber: 17.8 Consensus size: 28
924067 GACAACTACA
924077 TGGCACCCTTT-AAAGCCCACAAGTCAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAG
*
924104 TGGCACCCTTCTCTAAAGACCACACAAGTCGG
1 TGGCACCCTT-TC-AAAG-CC-CACAAGTCAG
**
924136 TGGCAACCCCCTTT-AAAGCCCACACAAGTTGG
1 TGGC-A--CCCTTTCAAAG-CC-CACAAGTCAG
** *
924168 TGGCATCTTTTCTTCAAAGCCCACGAGTCAG
1 TGGCA-C-CCT-TTCAAAGCCCACAAGTCAG
* * *
924199 TGGCACCCTTTCAAAGCCCCCAAATCAA
1 TGGCACCCTTTCAAAGCCCACAAGTCAG
* * * *
924227 TGGCACCCTTCCGATGCCCACAAGTCAA
1 TGGCACCCTTTCAAAGCCCACAAGTCAG
* *
924255 TGGCACCCCTTTCAAAGCCTATAAGTCAG
1 TGGCA-CCCTTTCAAAGCCCACAAGTCAG
* * * *
924284 TGACACCCTTCCAAAGCCTACAATTCAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAG
*
924312 TGGCACCCTTTTCAAAG-CCACAAGTTAG
1 TGGCACCC-TTTCAAAGCCCACAAGTCAG
*** * * * *
924340 TGGCTTTCTTCCAAAGCCCATAAGTTAA
1 TGGCACCCTTTCAAAGCCCACAAGTCAG
*
924368 TGGCACCCTTTTAAAGCTCGCACAAGTCAG
1 TGGCACCCTTTCAAAGC-C-CACAAGTCAG
924398 TGGCAACCCTTTCTAAAGTCCACACAAGTC-G
1 TGGC-ACCCTTTC-AAAG-CC-CACAAGTCAG
* *
924429 ATGGCAACCCCCTTCAAAGCCCAGACAAGTTAG
1 -TGGC-A-CCCTTTCAAAGCCC--ACAAGTCAG
** ** *
924462 TGGCATCTTTTTTTTCAAAGCCCATGAGTTAG
1 TGGCA-C---CCTTTCAAAGCCCACAAGTCAG
*
924494 TGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAG
*
924522 TGGCACCCTTCCAAAGCCCACAAG-CAAG
1 TGGCACCCTTTCAAAGCCCACAAGTC-AG
*
924550 TGGCACCCCTTTCTAAAGCCCATACAAGTCGG
1 TGGCA-CCCTTTC-AAAGCCC--ACAAGTCAG
924582 TGGCAACCC-TTCTAAAGCCCACA
1 TGGC-ACCCTTTC-AAAGCCCACA
924605 CTAGCTAGTG
Statistics
Matches: 400, Mismatches: 67, Indels: 66
0.75 0.13 0.12
Matches are distributed among these distances:
27 17 0.04
28 153 0.38
29 39 0.10
30 25 0.06
31 40 0.10
32 95 0.24
33 15 0.04
34 11 0.03
35 5 0.01
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (28 bp):
TGGCACCCTTTCAAAGCCCACAAGTCAG
Found at i:924424 original size:32 final size:30
Alignment explanation
Indices: 924087--924699 Score: 298
Period size: 28 Copynumber: 20.4 Consensus size: 30
924077 TGGCACCCTT
924087 TAAAGCCCACAAGTCAGTGGC-ACCCTTCTC
1 TAAAGCCCACAAGTCAGTGGCAACCCTT-TC
* *
924117 TAAAGACCACACAAGTCGGTGGCAACCCCCTT-
1 TAAAG-CC-CACAAGTCAGTGGCAA-CCCTTTC
** * *
924149 TAAAGCCCACACAAGTTGGTGGC-ATCTTTTC
1 TAAAG-CC-CACAAGTCAGTGGCAACCCTTTC
*
924180 TTCAAAGCCCACGAGTCAGTGGC-ACCCTTTC
1 -T-AAAGCCCACAAGTCAGTGGCAACCCTTTC
* * *
924211 -AAAGCCCCCAAATCAATGGC-ACCC-TTC
1 TAAAGCCCACAAGTCAGTGGCAACCCTTTC
** * * *
924238 CGATGCCCACAAGTCAATGGCACCCCTTTC
1 TAAAGCCCACAAGTCAGTGGCAACCCTTTC
* * *
924268 -AAAGCCTATAAGTCAGTGAC-ACCC-TTC
1 TAAAGCCCACAAGTCAGTGGCAACCCTTTC
* * *
924295 CAAAGCCTACAATTCAGTGGC-ACCCTTT-
1 TAAAGCCCACAAGTCAGTGGCAACCCTTTC
* ***
924323 TCAAAG-CCACAAGTTAGTGGC-TTTC-TTC
1 T-AAAGCCCACAAGTCAGTGGCAACCCTTTC
* * * *
924351 CAAAGCCCATAAGTTAATGGC-ACCCTTT-
1 TAAAGCCCACAAGTCAGTGGCAACCCTTTC
924379 TAAAGCTCGCACAAGTCAGTGGCAACCCTTTC
1 TAAAGC-C-CACAAGTCAGTGGCAACCCTTTC
*
924411 TAAAGTCCACACAAGTC-GATGGCAACCCCCTTC
1 TAAAG-CC-CACAAGTCAG-TGGCAA-CCCTTTC
* * ** *
924444 -AAAGCCCAGACAAGTTAGTGGCATCTTTTTTT
1 TAAAGCCC--ACAAGTCAGTGGCAAC-CCTTTC
** *
924476 TCAAAGCCCATGAGTTAGTGGC-ACCCTTTC
1 T-AAAGCCCACAAGTCAGTGGCAACCCTTTC
*
924506 -AAAGCCCACAAGTTAGTGGC-ACCC-TTC
1 TAAAGCCCACAAGTCAGTGGCAACCCTTTC
* *
924533 CAAAGCCCACAAG-CAAGTGGCACCCCTTTC
1 TAAAGCCCACAAGTC-AGTGGCAACCCTTTC
*
924563 TAAAGCCCATACAAGTCGGTGGCAACCC-TTC
1 TAAAGCCC--ACAAGTCAGTGGCAACCCTTTC
924594 TAAAGCCCACACTAG-CTAGTGGCAA-CCTCTTC
1 TAAAGCCCACA--AGTC-AGTGGCAACCCT-TTC
*
924626 TAAAGCCCATATAAGTC-GATGGCATACCC--TC
1 TAAAGCCC--ACAAGTCAG-TGGCA-ACCCTTTC
* **
924657 TAAAGCCTACACAAG-CTAGTGCCAACATTTTC
1 TAAAGCC--CACAAGTC-AGTGGCAACCCTTTC
924689 TAAAGCCCACA
1 TAAAGCCCACA
924700 CAAGTTGTTG
Statistics
Matches: 455, Mismatches: 75, Indels: 106
0.72 0.12 0.17
Matches are distributed among these distances:
27 15 0.03
28 132 0.29
29 32 0.07
30 46 0.10
31 70 0.15
32 127 0.28
33 18 0.04
34 15 0.03
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (30 bp):
TAAAGCCCACAAGTCAGTGGCAACCCTTTC
Found at i:924632 original size:63 final size:63
Alignment explanation
Indices: 924491--924794 Score: 279
Period size: 63 Copynumber: 4.9 Consensus size: 63
924481 GCCCATGAGT
* * *
924491 TAGTGGCACCCT-TTC-AAAG-CC-CACAAGTTAGTGGC-ACCCTTCCAAAG-CC-CACAAGC
1 TAGTGGCAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGC
* * * * *
924547 AAGTGGC-ACCCCTTTCTAAAGCCCATACAAGTCGGTGGCAACCCTTCTAAAGCCCACACTAGC
1 TAGTGGCAACCTC-TTCTAAAGCCCACACAAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGC
* * * * *
924610 TAGTGGCAACCTCTTCTAAAGCCCATATAAGTCGATGGCATACCC-TCTAAAGCCTACACAAGC
1 TAGTGGCAACCTCTTCTAAAGCCCACACAAGTTGGTGGCA-ACCCTTCTAAAGCCCACACAAGC
* * * * * *
924673 TAGTGCCAACATTTTCTAAAGCCCACACAAGTTGTTGG-TACCTTTCTCTAAAGCCCACACAAGC
1 TAGTGGCAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACC-CT-TCTAAAGCCCACACAAGC
* *
924737 TGGTGGCAACCTCTTCTCCAAAGCCCACACAAGTTGGTGGCATCTCCTTCT-AAGCCCA
1 TAGTGGCAACCTCTTCT--AAAGCCCACACAAGTTGGTGGCAAC-CCTTCTAAAGCCCA
924795 ATGTCGTTGG
Statistics
Matches: 199, Mismatches: 32, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
55 2 0.01
56 6 0.03
57 3 0.02
58 4 0.02
59 2 0.01
60 11 0.06
61 14 0.07
62 2 0.01
63 84 0.42
64 38 0.19
65 7 0.04
66 23 0.12
67 2 0.01
68 1 0.01
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (63 bp):
TAGTGGCAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGC
Found at i:924662 original size:31 final size:31
Alignment explanation
Indices: 924550--924663 Score: 117
Period size: 31 Copynumber: 3.6 Consensus size: 31
924540 CACAAGCAAG
* * *
924550 TGGCACCCCTTTCTAAAGCCCATACAAGTCGG
1 TGGCAACCC-TTCTAAAGCCCATATAAGTCGA
* *
924582 TGGCAACCCTTCTAAAGCCCACACT-AG-CTA
1 TGGCAACCCTTCTAAAGCCCATA-TAAGTCGA
924612 GTGGCAACCTCTTCTAAAGCCCATATAAGTCGA
1 -TGGCAACC-CTTCTAAAGCCCATATAAGTCGA
924645 TGGCATACCC-TCTAAAGCC
1 TGGCA-ACCCTTCTAAAGCC
924664 TACACAAGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
30 1 0.01
31 33 0.48
32 30 0.43
33 5 0.07
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (31 bp):
TGGCAACCCTTCTAAAGCCCATATAAGTCGA
Found at i:924787 original size:34 final size:32
Alignment explanation
Indices: 924488--924787 Score: 146
Period size: 32 Copynumber: 9.6 Consensus size: 32
924478 AAAGCCCATG
*
924488 AGTTAGTGGCACCCTT-T-CAAAG-CC-CACA
1 AGTTGGTGGCACCCTTCTCCAAAGCCCACACA
*
924516 AGTTAGTGGCACCC-T-TCCAAAG-CC-CACA
1 AGTTGGTGGCACCCTTCTCCAAAGCCCACACA
*** * *
924544 AGCAAGTGGCACCCCTT-TCTAAAGCCCATACA
1 AGTTGGTGGCA-CCCTTCTCCAAAGCCCACACA
* *
924576 AGTCGGTGGCAACCCTTCT--AAAGCCCACACT
1 AGTTGGTGGC-ACCCTTCTCCAAAGCCCACACA
* * * *
924607 AGCTAGTGGCAACCTCTTCT--AAAGCCCATATA
1 AGTTGGTGGC-ACC-CTTCTCCAAAGCCCACACA
* * *
924639 AGTCGATGGCATACCC-TCT--AAAGCCTACACA
1 AGTTGGTGGC--ACCCTTCTCCAAAGCCCACACA
* * * * * * *
924670 AGCTAGTGCCAACATTTTCTAAAGCCCACACA
1 AGTTGGTGGCACCCTTCTCCAAAGCCCACACA
* * * *
924702 AGTTGTTGGTACCTTTCTCTAAAGCCCACACA
1 AGTTGGTGGCACCCTTCTCCAAAGCCCACACA
*
924734 AGCTGGTGGCAACCTCTTCTCCAAAGCCCACACA
1 AGTTGGTGGC-ACC-CTTCTCCAAAGCCCACACA
924768 AGTTGGTGGCATCTCCTTCT
1 AGTTGGTGGCA-C-CCTTCT
924788 AAGCCCAATG
Statistics
Matches: 210, Mismatches: 46, Indels: 26
0.74 0.16 0.09
Matches are distributed among these distances:
27 2 0.01
28 34 0.16
29 5 0.02
30 9 0.04
31 40 0.19
32 78 0.37
33 9 0.04
34 32 0.15
35 1 0.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (32 bp):
AGTTGGTGGCACCCTTCTCCAAAGCCCACACA
Found at i:924997 original size:113 final size:113
Alignment explanation
Indices: 924805--925066 Score: 307
Period size: 113 Copynumber: 2.3 Consensus size: 113
924795 ATGTCGTTGG
* * * * * * *
924805 CCTTGAATCAGCATACTAGCGCCTTTGTCATCTTTAAATCTAATATCGTTGGCTTTGAATCAGCA
1 CCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAATCCAATATCGCTGACTTTGAATCAGCA
* * *
924870 TATCGACACCTTTATCATTC-TTCTCATCTTTAAGTCTAATGTCACTGG
66 TATAGACACCTTTATCATTCTTTC-CATCCTTAAGTCTAATGTCACTGA
* * * * *
924918 TCTTGGATTAGCACATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGAAC-TTGAATCAGT
1 CCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAATCCAATATCGCTG-ACTTTGAATCAGC
*
924982 ATATTAG-CACTTTTATCATTCTTTCCATCCTTAAGTCTAATGTCACTGA
65 ATA-TAGACACCTTTATCATTCTTTCCATCCTTAAGTCTAATGTCACTGA
*
925031 CCTTGAATCAGCACATTGGCACTCTTT-TTATCTTTA
1 CCTTGAATCAGCACATTGGCAC-CTTTGTCATCTTTA
925067 TCATTTTTAA
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
113 115 0.92
114 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (113 bp):
CCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAATCCAATATCGCTGACTTTGAATCAGCA
TATAGACACCTTTATCATTCTTTCCATCCTTAAGTCTAATGTCACTGA
Found at i:930219 original size:20 final size:20
Alignment explanation
Indices: 930188--930244 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
930178 GTCAAAACCC
*
930188 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
930208 TTAAATGTATCGATACAGAT
1 TGAAATGTATCGATACACAT
* *
930228 TGCATTGTATCGATACA
1 TGAAATGTATCGATACA
930245 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:930248 original size:13 final size:13
Alignment explanation
Indices: 930230--930258 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
930220 ATACAGATTG
930230 CATTGTATCGATA
1 CATTGTATCGATA
930243 CATTGTATCGATA
1 CATTGTATCGATA
930256 CAT
1 CAT
930259 GACCAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:936976 original size:21 final size:20
Alignment explanation
Indices: 936952--937003 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
936942 TCCCTAGGAA
*
936952 GCACCCACCAGGTCGCGACCG
1 GCACCC-CCAGGTCGCAACCG
*
936973 GCACCCCTAGGTCGCAACCGG
1 GCACCCCCAGGTCGCAACC-G
936994 GCAGCCCCCA
1 GCA-CCCCCA
937004 CACTAGCAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 11 0.42
21 10 0.38
22 5 0.19
ACGTcount: A:0.19, C:0.48, G:0.27, T:0.06
Consensus pattern (20 bp):
GCACCCCCAGGTCGCAACCG
Found at i:937914 original size:23 final size:23
Alignment explanation
Indices: 937881--937927 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
937871 GGTACCTCAT
937881 CGACGTAAGCAAGCTGCCCCGCA
1 CGACGTAAGCAAGCTGCCCCGCA
*
937904 CGACGTGAGCAAGCTGCCCCGCA
1 CGACGTAAGCAAGCTGCCCCGCA
937927 C
1 C
937928 AAATGGAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.40, G:0.28, T:0.09
Consensus pattern (23 bp):
CGACGTAAGCAAGCTGCCCCGCA
Found at i:938411 original size:22 final size:21
Alignment explanation
Indices: 938385--938428 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
938375 CGAAAGTGTT
*
938385 AAATTATTTTACTAAGGGGGAG
1 AAATT-TTTGACTAAGGGGGAG
*
938407 AAATTTTTGATTAAGGGGGAG
1 AAATTTTTGACTAAGGGGGAG
938428 A
1 A
938429 GAAAAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.30, T:0.32
Consensus pattern (21 bp):
AAATTTTTGACTAAGGGGGAG
Found at i:938958 original size:17 final size:17
Alignment explanation
Indices: 938938--938970 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
938928 GTCAAAACCC
938938 TGAAAAGTATCGATACT
1 TGAAAAGTATCGATACT
938955 TGAAAAGTATCGATAC
1 TGAAAAGTATCGATAC
938971 ACATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.27
Consensus pattern (17 bp):
TGAAAAGTATCGATACT
Found at i:939017 original size:13 final size:13
Alignment explanation
Indices: 938999--939025 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
938989 ACAGATTGCG
938999 TTGTATCGATACA
1 TTGTATCGATACA
939012 TTGTATCGATACA
1 TTGTATCGATACA
939025 T
1 T
939026 GACCAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:939038 original size:20 final size:21
Alignment explanation
Indices: 939013--939065 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
939003 ATCGATACAT
**
939013 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
* *
939033 TGTATCCATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
939054 TGTATCGATACA
1 TGTATCGATACA
939066 GGTCATTGGC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:943507 original size:20 final size:20
Alignment explanation
Indices: 943482--943537 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
943472 AATAGTCTGC
943482 ATGTATCGATATA-TTGAAGA
1 ATGTATCGATATATTTGAA-A
*
943502 ATGTATCGATATATTTGGAA
1 ATGTATCGATATATTTGAAA
*
943522 ATGTATCGATACATTT
1 ATGTATCGATATATTT
943538 ACTTATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 29 0.88
21 4 0.12
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (20 bp):
ATGTATCGATATATTTGAAA
Found at i:943640 original size:20 final size:20
Alignment explanation
Indices: 943615--943667 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
943605 CATTTGAGAC
**
943615 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACCA
* *
943635 ATGTATCGCTATATTCACCA
1 ATGTATCGATACATTCACCA
*
943655 ATGTATCAATACA
1 ATGTATCGATACA
943668 AATTGTAGAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTCACCA
Found at i:944338 original size:31 final size:31
Alignment explanation
Indices: 944303--945100 Score: 215
Period size: 31 Copynumber: 24.3 Consensus size: 31
944293 CTTTGACTCA
*
944303 GACTTAGGTGCCACCAGCTTGTGTGGGTTTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * * * ** * * *
944334 GACTTAGGTACCGCTATCTCATGTAGGCGTA
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * **
944365 GACTT-GGATGTCGCCAGCTTACGTGGGCTTT
1 GACTTAGG-TGCCACCAGCTTGTGTGGGCTTT
* *
944396 GACTTAGGCTTAGGTGCCACCAACTTGTGTGGGCTTC
1 G----A--CTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * * **
944433 GACTTAGGTGCCGCCAACTCGTGCAGGC-TT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
** * ** * *
944463 GAAC-CGGGTGCCACCAACTCATGTGGGGTTA
1 G-ACTTAGGTGCCACCAGCTTGTGTGGGCTTT
*
944494 GACTTAGGTGCCACCAGCTTGTGTGAGCTTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * ** * * *
944525 GACTTAGGTGCCGCCAACTCATGCGAGCTTA
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
** * *
944556 GACTCGGGTGCCACTAGCTTGTGCGGGCTTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* *
944587 GACTCAGGCTTAGGTGCCACCAGTTTGTGTGGGTTTT
1 G----A--CTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * * * * *
944624 GACTTATGTACCTCCAACTCGTATGGG-TTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* *
944654 AGACTTAGGTGCCACCAACTCGTGTGGGCTTAGACTT
1 -GACTTAGGTGCCACCAGCTTGTGTGGGC-T----TT
* * *
944691 AGACTTAGGTGCTATCAGCTTATGTGGGCTTT
1 -GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * * * **
944723 GACTTAGGTGTCGCCAACTCT-TGCGAGCTAAGACTCG
1 GACTTAGGTGCCACCAGCT-TGTGTG-G----G-CTTT
944760 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * * * *
944791 GAC-TCGAGTGCGATCAGCTTATGCGGGCTTTGACT
1 GACTTAG-GTGCCACCAGCTTGTGTGGGC-TT---T
* ** * *
944826 CAGACTTAGATGCCATTAGCTTGTATGGGCTTA
1 --GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * * * * *
944859 GACTTGGGTGTCGCTAGCTCGTGAGGGCTTGACTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGC-T---TT
* *
944894 AGACTTAGGTGCCACCAACTTGTATGGGCTTT
1 -GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * **
944926 GACTTAGGTGCTACCAACTCATGTGGGCTTAGATT
1 GACTTAGGTGCCACCAGCTTGTGTGGGC-T---TT
* * *
944961 CAGACTTAAGTGCCACCAGCTTGTATGGGTTTT
1 --GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
* * *
944994 GACTTAGGTGCCGCCAACTTGTGTAGGCTTTAACT
1 GACTTAGGTGCCACCAGCTTGTGTGGGC-TT---T
*** *
945029 CAGACTTAGGTGTTGCCAGCTTGTGTGGGCTTA
1 --GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
** * * *
945062 GACTCGGGTGCCAACAGCTTATGCGGGCTTT
1 GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
945093 GAC-TAGGT
1 GACTTAGGT
945101 TTTGACTAAC
Statistics
Matches: 550, Mismatches: 160, Indels: 115
0.67 0.19 0.14
Matches are distributed among these distances:
30 31 0.06
31 305 0.55
32 13 0.02
33 5 0.01
35 8 0.01
36 29 0.05
37 155 0.28
38 4 0.01
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.30
Consensus pattern (31 bp):
GACTTAGGTGCCACCAGCTTGTGTGGGCTTT
Found at i:944394 original size:99 final size:97
Alignment explanation
Indices: 944291--944795 Score: 396
Period size: 99 Copynumber: 5.1 Consensus size: 97
944281 AGCTTGTACA
* * *
944291 GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGTTTTGACTTAGGTACCGCTATCTCAT
1 GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTACCGCCAACTCAT
* * * * *
944356 GTAGGCGTAGACTTGGATGTCGCCAGCTTACGTG
66 G-AGGC-TAGACTCGGGTGCCACCAGCTTATGTG
* * * * * *
944390 GGCTTTGACTTAGGCTTAGGTGCCACCAACTTGTGTGGGCTTCGACTTAGGTGCCGCCAACTCGT
1 GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTACCGCCAACTCAT
* * *
944455 GCAGGCTTGAAC-CGGGTGCCACCAACTCATGTG
66 G-AGGCTAG-ACTCGGGTGCCACCAGCTTATGTG
* * *
944488 GG----G--TTAGACTTAGGTGCCACCAGCTTGTGTGAGCTTTGACTTAGGTGCCGCCAACTCAT
1 GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTACCGCCAACTCAT
* * * *
944547 GCGAGCTTAGACTCGGGTGCCACTAGCTTGTGCG
66 GAG-GC-TAGACTCGGGTGCCACCAGCTTATGTG
* * * * *
944581 GGCTTTGACTCAGGCTTAGGTGCCACCAGTTTGTGTGGGTTTTGACTTATGTACCTCCAACTCGT
1 GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTACCGCCAACTC--
* ** * **
944646 ATG-GGTTTAGACTTAGGTGCCACCAACTCGTGTG
64 ATGAGG-CTAGACTCGGGTGCCACCAGCTTATGTG
* * * * * ** *
944680 GGCTTAGACTTAGACTTAGGTGCTATCAGCTTATGTGGGCTTTGACTTAGGTGTCGCCAACTCTT
1 GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTACCGCCAACTCAT
* *
944745 GCGAGCTAAGACTCGGACTTAGGTGCCACCAGCTTGTGTG
66 GAG-GCT-AGACTC-G-----GGTGCCACCAGCTTATGTG
944785 GGCTTTGACTC
1 GGCTTTGACTC
944796 GAGTGCGATC
Statistics
Matches: 319, Mismatches: 65, Indels: 38
0.76 0.15 0.09
Matches are distributed among these distances:
91 1 0.00
92 56 0.18
93 20 0.06
94 1 0.00
97 3 0.01
98 20 0.06
99 188 0.59
100 1 0.00
101 3 0.01
105 26 0.08
ACGTcount: A:0.17, C:0.24, G:0.29, T:0.30
Consensus pattern (97 bp):
GGCTTTGACTCAGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTACCGCCAACTCAT
GAGGCTAGACTCGGGTGCCACCAGCTTATGTG
Found at i:944643 original size:191 final size:194
Alignment explanation
Indices: 944302--944761 Score: 509
Period size: 191 Copynumber: 2.4 Consensus size: 194
944292 GCTTTGACTC
* * * * * *
944302 AGACTTAGGTGCCACCAGCTTGTGTGGGTTTTGACTTAGGTACCGCTATCTCATG-TAGGCGTAG
1 AGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTGCCGCCAACTCATGCGA-GCTTAG
* * * * *
944366 ACTTGGATGTCGCCAGCTTACGTGGGCTTTGACTTAGGCTTAGGTGCCACCAACTTGTGTGGGCT
65 ACTCGGATGCCACCAGCTTACGCGGGCTTTGACTCAGGCTTAGGTGCCACCAACTTGTGTGGGCT
* *
944431 TCGACTTAGGTGCCGCCAACTCGTGCA-GGCTTGA-AC-CGGGTGCCACCAACTCATGTGGG-G-
130 TCGACTTAGGTACCGCCAACTCGT--ATGGCTTGAGACTCAGGTGCCACCAACTCATGTGGGTGA
944491 TT
193 TT
*
944493 AGACTTAGGTGCCACCAGCTTGTGTGAGCTTTGACTTAGGTGCCGCCAACTCATGCGAGCTTAGA
1 AGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTGCCGCCAACTCATGCGAGCTTAGA
* * ** ** *
944558 CTCGGGTGCCACTAGCTTGTGCGGGCTTTGACTCAGGCTTAGGTGCCACCAGTTTGTGTGGGTTT
66 CTCGGATGCCACCAGCTTACGCGGGCTTTGACTCAGGCTTAGGTGCCACCAACTTGTGTGGGCTT
* * * * * * *
944623 TGACTTATGTACCTCCAACTCGTATGGGTTTAGACTTAGGTGCCACCAACTCGTGTGGGCTTAGA
131 CGACTTAGGTACCGCCAACTCGTATGGCTTGAGACTCAGGTGCCACCAACTCATGTGGG--T-GA
944688 CTT
193 -TT
* * * * * *
944691 AGACTTAGGTGCTATCAGCTTATGTGGGCTTTGACTTAGGTGTCGCCAACTCTTGCGAGCTAAGA
1 AGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTGCCGCCAACTCATGCGAGCTTAGA
944756 CTCGGA
66 CTCGGA
944762 CTTAGGTGCC
Statistics
Matches: 223, Mismatches: 36, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
189 1 0.00
190 5 0.02
191 130 0.58
192 21 0.09
196 1 0.00
198 65 0.29
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.29
Consensus pattern (194 bp):
AGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGACTTAGGTGCCGCCAACTCATGCGAGCTTAGA
CTCGGATGCCACCAGCTTACGCGGGCTTTGACTCAGGCTTAGGTGCCACCAACTTGTGTGGGCTT
CGACTTAGGTACCGCCAACTCGTATGGCTTGAGACTCAGGTGCCACCAACTCATGTGGGTGATT
Found at i:944702 original size:37 final size:37
Alignment explanation
Indices: 944652--945065 Score: 158
Period size: 37 Copynumber: 12.0 Consensus size: 37
944642 TCGTATGGGT
* *
944652 TTAGACTTAGGTGCCACCAACTCGTGTGGGCTTAGAC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * *
944689 TTAGACTTAGGTGCTATCAGCTTATGTGGGC-T----
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * * * * *
944721 TT-GACTTAGGTGTCGCCAACTCT-TGCGAGCTAAGAC
1 TTAGACTTAGGTGCCACCAGCT-TGTGTGGGCTTAGAC
** *
944757 TCGGACTTAGGTGCCACCAGCTTGTGTGGGCTTTGAC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * * * * *
944794 -T---C-GA-GTGCGATCAGCTTATGCGGGCTTTGAC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * ** *
944825 TCAGACTTAGATGCCATTAGCTTGTATGGGCTTAGAC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * * * *
944862 TT-G-----GGTGTCGCTAGCTCGTGAGGGCTT-GAC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* *
944892 TTAGACTTAGGTGCCACCAACTTGTATGGGC-T----
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * **
944924 TT-GACTTAGGTGCTACCAACTCATGTGGGCTTAGA-
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* *
944959 TTCAGACTTAAGTGCCACCAGCTTGTATGGG-TT----
1 TT-AGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
* * *
944992 TT-GACTTAGGTGCCGCCAACTTGTGTAGGCTTTA-AC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGC-TTAGAC
* ***
945028 TCAGACTTAGGTGTTGCCAGCTTGTGTGGGCTTAGAC
1 TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
945065 T
1 T
945066 CGGGTGCCAA
Statistics
Matches: 273, Mismatches: 71, Indels: 66
0.67 0.17 0.16
Matches are distributed among these distances:
30 5 0.02
31 106 0.39
32 7 0.03
33 5 0.02
35 4 0.01
36 26 0.10
37 120 0.44
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.31
Consensus pattern (37 bp):
TTAGACTTAGGTGCCACCAGCTTGTGTGGGCTTAGAC
Found at i:944742 original size:68 final size:67
Alignment explanation
Indices: 944644--945065 Score: 366
Period size: 68 Copynumber: 6.2 Consensus size: 67
944634 CCTCCAACTC
* * * *
944644 GTATGGG-TTTAGACTTAGGTGCCACCAACTCGTGTGGGCTTAGACTTAGACTTAGGTGCTATCA
1 GTATGGGCTTT-GACTTAGGTG-CGCCAACTCGTGTGGGCTTAGACTCAGACTTAGGTGCCACCA
944708 GCTT
64 GCTT
* * * * * * *
944712 ATGTGGGCTTTGACTTAGGTGTCGCCAACTCTTGCGAGCTAAGACTCGGACTTAGGTGCCACCAG
1 GTATGGGCTTTGACTTAGGTG-CGCCAACTCGTGTGGGCTTAGACTCAGACTTAGGTGCCACCAG
944777 CTT
65 CTT
* * * * ** * * * **
944780 GTGTGGGCTTTGAC-TCGAGTGCGATCAGCTTATGCGGGCTTTGACTCAGACTTAGATGCCATTA
1 GTATGGGCTTTGACTTAG-GTGCG-CCAACTCGTGTGGGCTTAGACTCAGACTTAGGTGCCACCA
944844 GCTT
64 GCTT
* * * * * * *
944848 GTATGGGCTTAGACTTGGGTGTCGCTAGCTCGTGAGGGCTT-GACTTAGACTTAGGTGCCACCAA
1 GTATGGGCTTTGACTTAGGTG-CGCCAACTCGTGTGGGCTTAGACTCAGACTTAGGTGCCACCAG
944912 CTT
65 CTT
* * * *
944915 GTATGGGCTTTGACTTAGGTGCTACCAACTCATGTGGGCTTAGATTCAGACTTAAGTGCCACCAG
1 GTATGGGCTTTGACTTAGGTGC-GCCAACTCGTGTGGGCTTAGACTCAGACTTAGGTGCCACCAG
944980 CTT
65 CTT
* * * ***
944983 GTATGGGTTTTGACTTAGGTGCCGCCAACTTGTGTAGGCTTTA-ACTCAGACTTAGGTGTTGCCA
1 GTATGGGCTTTGACTTAGGTG-CGCCAACTCGTGTGGGC-TTAGACTCAGACTTAGGTGCCACCA
945047 GCTT
64 GCTT
* *
945051 GTGTGGGCTTAGACT
1 GTATGGGCTTTGACT
945066 CGGGTGCCAA
Statistics
Matches: 283, Mismatches: 62, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
66 1 0.00
67 57 0.20
68 214 0.76
69 11 0.04
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.32
Consensus pattern (67 bp):
GTATGGGCTTTGACTTAGGTGCGCCAACTCGTGTGGGCTTAGACTCAGACTTAGGTGCCACCAGC
TT
Found at i:945052 original size:203 final size:204
Alignment explanation
Indices: 944644--945074 Score: 474
Period size: 203 Copynumber: 2.1 Consensus size: 204
944634 CCTCCAACTC
* * * * * *
944644 GTATGGGTTTAGACTTAGGTGCCACCAACTCGTGTGGGCTTAGACTTAGACTTAGGTGCTATCAG
1 GTATGGGCTTAGACTTGGGTGCCACCAACTCGTGAGGGCTTAGACTTAGACTTAGGTGCCACCAA
* * * * *
944709 CTTATGTGGGCTTTGACTTAGGTGTCGCCAACTCTTGCGAGCTAAGACTCGGACTTAGGTGCCAC
66 CTTATATGGGCTTTGACTTAGGTGTCACCAACTCATGCGAGCTAAGACTCAGACTTAAGTGCCAC
* * * * * *
944774 CAGCTTGTGTGGGCTTTGACTCGAGTGCGATCAGCTTATGCGGGCTTTGACTCAGACTTAGATGC
131 CAGCTTGTATGGGCTTTGACTAGAGTGCGACCAACTTATGCAGGCTTTAACTCAGACTTAGATGC
**
944839 CATTAGCTT
196 CACCAGCTT
* * * *
944848 GTATGGGCTTAGACTTGGGTGTCGCTAGCTCGTGAGGGCTT-GACTTAGACTTAGGTGCCACCAA
1 GTATGGGCTTAGACTTGGGTGCCACCAACTCGTGAGGGCTTAGACTTAGACTTAGGTGCCACCAA
* * * * *
944912 CTTGTATGGGCTTTGACTTAGGTG-CTACCAACTCATGTGGGCTTAGATTCAGACTTAAGTGCCA
66 CTTATATGGGCTTTGACTTAGGTGTC-ACCAACTCATGCGAGCTAAGACTCAGACTTAAGTGCCA
* * * *
944976 CCAGCTTGTATGGGTTTTGACTTAG-GTGCCG-CCAACTTGTGTAGGCTTTAACTCAGACTTAGG
130 CCAGCTTGTATGGGCTTTGAC-TAGAGTG-CGACCAACTTATGCAGGCTTTAACTCAGACTTAGA
***
945039 TGTTGCCAGCTT
193 TGCCACCAGCTT
* *
945051 GTGTGGGCTTAGACTCGGGTGCCA
1 GTATGGGCTTAGACTTGGGTGCCA
945075 ACAGCTTATG
Statistics
Matches: 185, Mismatches: 39, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
202 1 0.01
203 146 0.79
204 38 0.21
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (204 bp):
GTATGGGCTTAGACTTGGGTGCCACCAACTCGTGAGGGCTTAGACTTAGACTTAGGTGCCACCAA
CTTATATGGGCTTTGACTTAGGTGTCACCAACTCATGCGAGCTAAGACTCAGACTTAAGTGCCAC
CAGCTTGTATGGGCTTTGACTAGAGTGCGACCAACTTATGCAGGCTTTAACTCAGACTTAGATGC
CACCAGCTT
Found at i:945172 original size:36 final size:36
Alignment explanation
Indices: 945132--945246 Score: 135
Period size: 36 Copynumber: 3.2 Consensus size: 36
945122 TAAAAAGAGG
*
945132 AAGAAAAAGGAGTGGACATCCTACTTTTTGAGGACA
1 AAGAAAAAAGAGTGGACATCCTACTTTTTGAGGACA
* *
945168 AAGAAAAAAGAGTGGGCATCCTACTCTTTGAGGACA
1 AAGAAAAAAGAGTGGACATCCTACTTTTTGAGGACA
* * * *
945204 AAGGAAAATGAG-CGAGCATCCT-GTTTTTGAGGACA
1 AAGAAAAAAGAGTGGA-CATCCTACTTTTTGAGGACA
*
945239 AAGGAAAA
1 AAGAAAAA
945247 TGAAAACGTT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
35 20 0.29
36 49 0.71
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (36 bp):
AAGAAAAAAGAGTGGACATCCTACTTTTTGAGGACA
Found at i:945240 original size:35 final size:36
Alignment explanation
Indices: 945148--945249 Score: 143
Period size: 36 Copynumber: 2.9 Consensus size: 36
945138 AAGGAGTGGA
* * * *
945148 CATCCTACTTTTTGAGGACAAAGAAAAAAGAGTGGG
1 CATCCTACTTTTTGAGGACAAAGGAAAATGAGCGAG
*
945184 CATCCTACTCTTTGAGGACAAAGGAAAATGAGCGAG
1 CATCCTACTTTTTGAGGACAAAGGAAAATGAGCGAG
*
945220 CATCCT-GTTTTTGAGGACAAAGGAAAATGA
1 CATCCTACTTTTTGAGGACAAAGGAAAATGA
945250 AAACGTTCTG
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
35 22 0.37
36 37 0.63
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (36 bp):
CATCCTACTTTTTGAGGACAAAGGAAAATGAGCGAG
Found at i:945594 original size:156 final size:157
Alignment explanation
Indices: 945306--945631 Score: 399
Period size: 156 Copynumber: 2.1 Consensus size: 157
945296 GCTTCTTGAA
* * * *
945306 GACAAAGGAAAATGAATGTGAAATGGGTCCTGCTCTTTGAGGACAAAAGAAAAAGAGAAAATGAA
1 GACAAAGGAAAAAGAATGTGAAATGGGTCCTGCTCCTTGAAGACAAAAGAAAAAAAGAAAATGAA
*
945371 GTACGTCCTATTCCATGAAGACAAAAGAAATAAAAGAAACCATGTCTAGCTCCTCAAGGACCAAA
66 GTACGTCCTACTCCATGAAGACAAAAGAAATAAAAGAAACCATGTCTAGCTCCTCAAGGACCAAA
* *
945436 GGAAAAACGTGTGTCCTACTCATTAAG
131 GGAAAAACATGTATCCTACTCATTAAG
* * * * *
945463 GATAAAGGAAAAAGAGTGTGAAATGGGTCCT-TTCCTTGAAGACAAAGGAAAAAAAGGAAATGAA
1 GACAAAGGAAAAAGAATGTGAAATGGGTCCTGCTCCTTGAAGACAAAAGAAAAAAAGAAAATGAA
* * * * * * * *
945527 GTGCGTCCTGCTCC-TTAAGGAC-AAAGAAAATGAAGGAAAGCATGTCCTA-TTCCTCGAGGACC
66 GTACGTCCTACTCCATGAA-GACAAAAG-AAATAAAAGAAACCATGT-CTAGCTCCTCAAGGACC
* *
945589 AAAGGAAAAATATGTATCCTACTCATTAGG
128 AAAGGAAAAACATGTATCCTACTCATTAAG
945619 GACAAAGGAAAAA
1 GACAAAGGAAAAA
945632 AAAAAGAAAT
Statistics
Matches: 143, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
155 7 0.05
156 105 0.73
157 31 0.22
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (157 bp):
GACAAAGGAAAAAGAATGTGAAATGGGTCCTGCTCCTTGAAGACAAAAGAAAAAAAGAAAATGAA
GTACGTCCTACTCCATGAAGACAAAAGAAATAAAAGAAACCATGTCTAGCTCCTCAAGGACCAAA
GGAAAAACATGTATCCTACTCATTAAG
Found at i:963782 original size:28 final size:28
Alignment explanation
Indices: 963732--964153 Score: 255
Period size: 28 Copynumber: 15.0 Consensus size: 28
963722 CACCGACTTA
**
963732 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
* *
963760 TGTGGGCTTCAAAAAGG-TTCCACTAACT
1 TGTGGGCTT-AAAAAGGATGCCACTGACT
**
963788 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
** * *
963816 TGTGGGCTT-TGAAGATATGCCACTAACT
1 TGTGGGCTTAAAAAG-GATGCCACTGACT
** ** *
963844 CATGGGCTTTCAAAGGATGCCATTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
* * *
963872 CGTGGGCATT-AGAAGGATGCCACTGACC
1 TGTGGGC-TTAAAAAGGATGCCACTGACT
* ***
963900 CGTGGGCTTCGGAAGGATGCCACTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
* * * *
963928 CGTGGGCTTTAGAAGGATGCCATTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
** * *
963956 CATGGGCTTTGAAAA-GATGCCACTAACT
1 TGTGGGC-TTAAAAAGGATGCCACTGACT
* * * ***
963984 CGTGAGTTTTGGAAGGATGCCACTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
* ** * *
964012 CGTGGGCTTTGAAAGGATGCCGCTGAAT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
* *
964040 TGTGGGCTTTGAAAA-GATGCCATTGACT
1 TGTGGGC-TTAAAAAGGATGCCACTGACT
* **
964068 TGTGGACTT-TGAAGAGATGCCACTGTACT
1 TGTGGGCTTAAAAAG-GATGCCACTG-ACT
* ** *
964097 TATGGGCTTTGAAAGGATGTCACTGACT
1 TGTGGGCTTAAAAAGGATGCCACTGACT
* *
964125 CGTGGGCATT-GAAAGGATGCCACTGACT
1 TGTGGGC-TTAAAAAGGATGCCACTGACT
964153 T
1 T
964154 CCAGCCTTTG
Statistics
Matches: 315, Mismatches: 65, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.01
27 16 0.05
28 253 0.80
29 41 0.13
30 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (28 bp):
TGTGGGCTTAAAAAGGATGCCACTGACT
Found at i:963796 original size:56 final size:56
Alignment explanation
Indices: 963733--964819 Score: 915
Period size: 56 Copynumber: 19.2 Consensus size: 56
963723 ACCGACTTAT
* * *
963733 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTCAAAAAGG-TTCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT-TAAAAGGATGCCACTAACTC
* *
963789 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAGATATGCCACTAACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAG-GATGCCACTAACTC
* * * * * * * *
963845 ATGGGCTTTCAAAGGATGCCATTGACTCGTGGGCATTAGAAGGATGCCACTGACCC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * * * *
963901 GTGGGCTTCGGAAGGATGCCACTGACTCGTGGGCTTTAGAAGGATGCCATTGACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * * * * ** *
963957 ATGGGCTTTGAAAAGATGCCACTAACTCGTGAGTTTTGGAAGGATGCCACTGACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * * *
964013 GTGGGCTTTGAAAGGATGCCGCTGAATTGTGGGCTTTGAAAA-GATGCCATTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTC
* * * * *
964069 GTGGACTTTG-AAGAGATGCCACTGTACTTATGGGCTTTGAAAGGATGTCACTGACTC
1 GTGGGCTTTGAAAG-GATGCCACTG-ACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* *** * *
964126 GTGGGCATTGAAAGGATGCCACTGACTTCCAGCCTTTGGAAGGATGCCACTGACCTGCCACTAAC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT--AA--A----A-GGA--TGCCACTAAC
964191 TC
55 TC
* * * ** *
964193 GTGGGCTTTGGAAGGATGCCACTAAGTTGTGGGCTTT-GGAGGATGCCCCTAACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * *
964248 GTGGGCTTTG-GAGGATGCCACTGACTCGTGGGCTTTGGAAA-GATGCCACTAACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTC
* * * * * ** * *
964303 GTAGGCTTT-AGAAGGATGACACTAACTCGTGGCCTTTGGAAGGATGCCACTGACTT
1 GTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * **
964359 GCGGGCTTTCG-AAGGATGCCACTAACTTATGGGCTTTGGAAGGATGCCACTAACTC
1 GTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * * *
964415 GTGAGCTTTGGAAGGATGCCATTGACTTGTGGGCTTTGGAAA-GATGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTC
* * * * ** *
964471 GTGGACTTTGAAAAGATGCCACTAACTTGTGGGCTTT-GAAGAGATGCCACGGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAG-GATGCCACTAACTC
* * ** * *
964527 GTGGGCTTTGGAAGGATGCCATTGACTCATAGGCTTTGAAAAAG-TGCCACTAACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTC
* * * * **
964583 ATGGGCTTTGGAATGATGCCACTGACTCGTGGGCTTTGCAAGGATGCCACTAACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * *
964639 GTGGGCTTTGAAAGGATGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
*
964695 GTGTGCTTTG-AAGAGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
1 GTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
* * * * * * *
964751 TTGGGCTTTGGAAGGATGCCATTGACTCGTGGGTTTTGAAAAAG-TGCCACTGACTC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTC
* *
964807 ATGGGCATTGAAA
1 GTGGGCTTTGAAA
964820 AGAGATCGTA
Statistics
Matches: 840, Mismatches: 155, Indels: 72
0.79 0.15 0.07
Matches are distributed among these distances:
54 27 0.03
55 55 0.07
56 648 0.77
57 60 0.07
58 7 0.01
60 1 0.00
64 1 0.00
65 2 0.00
67 39 0.05
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (56 bp):
GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTC
Found at i:963826 original size:84 final size:84
Alignment explanation
Indices: 963732--964819 Score: 1013
Period size: 84 Copynumber: 12.8 Consensus size: 84
963722 CACCGACTTA
* ** * *
963732 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTCAAAAAGG-TTCCACTAACTTGTGGGCT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTT-TGAAAGGATGCCACTAACTCGTGGGCT
*
963796 TTGAAAGGATGCCACTGACT
65 TTGAAAGGATGCCACTAACT
* * ** * * * *
963816 TGTGGGCTTT-GAAGATATGCCACTAACTCATGGGCTTTCAAAGGATGCCATTGACTCGTGGGCA
1 TGTGGGCTTTGGAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCT
* *
963880 TT-AGAAGGATGCCACTGACC
65 TTGA-AAGGATGCCACTAACT
* * * * * *
963900 CGTGGGCTTCGGAAGGATGCCACTGACTCGTGGGCTTT-AGAAGGATGCCATTGACTCATGGGCT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACTCGTGGGCT
*
963964 TTGAAAAGATGCCACTAACT
65 TTGAAAGGATGCCACTAACT
* * * * * *
963984 CGTGAGTTTTGGAAGGATGCCACTGACTCGTGGGCTTTGAAAGGATGCCGCTGAA-TTGTGGGCT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACT-AACTCGTGGGCT
* * *
964048 TTGAAAAGATGCCATTGACT
65 TTGAAAGGATGCCACTAACT
* * * *
964068 TGTGGACTTT-GAAGAGATGCCACTGTACTTATGGGCTTTGAAAGGATGTCACTGACTCGTGGGC
1 TGTGGGCTTTGGAAG-GATGCCACTG-ACTTGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGC
* *
964132 ATTGAAAGGATGCCACTGACT
64 TTTGAAAGGATGCCACTAACT
*** * *
964153 TCCAGCCTTTGGAAGGATGCCACTGACCTGCCACTAACTCGTGGGCTTTGGAAGGATGCCACTAA
1 TGTGGGCTTTGGAAGGATG-C-C--A-CTG--ACT---T-GTGGGCTTTGAAAGGATGCCACTAA
* * * *
964218 GTTGTGGGCTTTG-GAGGATGCCCCTAACT
55 CTCGTGGGCTTTGAAAGGATGCCACTAACT
* * *
964247 CGTGGGCTTTGG-AGGATGCCACTGACTCGTGGGCTTTGGAAA-GATGCCACTAACTCGTAGGCT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACTCGTGGGCT
*
964310 TT-AGAAGGATGACACTAACT
65 TTGA-AAGGATGCCACTAACT
* * * **
964330 CGTGGCCTTTGGAAGGATGCCACTGACTTGCGGGCTTTCG-AAGGATGCCACTAACTTATGGGCT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACTCGTGGGCT
*
964394 TTGGAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTAACT
* * * * *
964414 CGTGAGCTTTGGAAGGATGCCATTGACTTGTGGGCTTTGGAAA-GATGCCACTAACTTGTGGACT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACTCGTGGGCT
*
964478 TTGAAAAGATGCCACTAACT
65 TTGAAAGGATGCCACTAACT
* * * * * *
964498 TGTGGGCTTT-GAAGAGATGCCACGGACTTGTGGGCTTTGGAAGGATGCCATTGACTCATAGGCT
1 TGTGGGCTTTGGAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCT
*
964562 TTGAAA-AAGTGCCACTAACT
65 TTGAAAGGA-TGCCACTAACT
** * * *
964582 CATGGGCTTTGGAATGATGCCACTGACTCGTGGGCTTTGCAAGGATGCCACTAACTCGTGGGCTT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTT
**
964647 TGAAAGGATGCCACCGACT
66 TGAAAGGATGCCACTAACT
* * * *
964666 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGTGCTTTG-AAGAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACTCGTGGGCT
*
964730 TTAAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTAACT
* * * * * *
964750 CT-TGGGCTTTGGAAGGATGCCATTGACTCGTGGGTTTTGAAA-AAGTGCCACTGACTCATGGGC
1 -TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACTCGTGGGC
*
964813 ATTGAAA
64 TTTGAAA
964820 AGAGATCGTA
Statistics
Matches: 828, Mismatches: 138, Indels: 76
0.79 0.13 0.07
Matches are distributed among these distances:
82 29 0.04
83 55 0.07
84 590 0.71
85 74 0.09
86 8 0.01
87 1 0.00
88 3 0.00
89 2 0.00
90 3 0.00
91 4 0.00
92 1 0.00
93 6 0.01
94 21 0.03
95 31 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (84 bp):
TGTGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTT
TGAAAGGATGCCACTAACT
Found at i:964783 original size:28 final size:28
Alignment explanation
Indices: 964181--964788 Score: 668
Period size: 28 Copynumber: 21.8 Consensus size: 28
964171 GCCACTGACC
964181 TGCCACTAACTCGTGGGCTTTGGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* *
964209 TGCCACTAAGTTGTGGGCTTTGG-AGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
*
964236 TGCCCCTAACTCGTGGGCTTTGG-AGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* *
964263 TGCCACTGACTCGTGGGCTTTGGAAAGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* *
964291 TGCCACTAACTCGTAGGCTTTAGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* *
964319 TGACACTAACTCGTGGCCTTTGGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* * * *
964347 TGCCACTGACTTGCGGGCTTTCGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
**
964375 TGCCACTAACTTATGGGCTTTGGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
*
964403 TGCCACTAACTCGTGAGCTTTGGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* * * *
964431 TGCCATTGACTTGTGGGCTTTGGAAAGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* * * *
964459 TGCCACTAACTTGTGGACTTTGAAAAGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
*
964487 TGCCACTAACTTGTGGGCTTT-GAAGAGA
1 TGCCACTAACTCGTGGGCTTTGGAAG-GA
** *
964515 TGCCACGGACTTGTGGGCTTTGGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* * * * **
964543 TGCCATTGACTCATAGGCTTT-GAAAAA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* *
964570 GTGCCACTAACTCATGGGCTTTGGAATGA
1 -TGCCACTAACTCGTGGGCTTTGGAAGGA
* *
964599 TGCCACTGACTCGTGGGCTTTGCAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
*
964627 TGCCACTAACTCGTGGGCTTTGAAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
** * *
964655 TGCCACCGACTTGTGGGCTTTGAAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* * *
964683 TGCCACTGACTTGTGTGCTTT-GAAGAGA
1 TGCCACTAACTCGTGGGCTTTGGAAG-GA
* * **
964711 TGCCACTGACTTGTGGGCTTTAAAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
*
964739 TGCCACTAACTCTTGGGCTTTGGAAGGA
1 TGCCACTAACTCGTGGGCTTTGGAAGGA
* * *
964767 TGCCATTGACTCGTGGGTTTTG
1 TGCCACTAACTCGTGGGCTTTG
964789 AAAAAGTGCC
Statistics
Matches: 495, Mismatches: 78, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
27 58 0.12
28 426 0.86
29 11 0.02
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (28 bp):
TGCCACTAACTCGTGGGCTTTGGAAGGA
Found at i:966120 original size:17 final size:17
Alignment explanation
Indices: 966079--966131 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
966069 TGGACCCTTC
* *
966079 TTTTTTTATTTATTT-G
1 TTTTTTTGTTTTTTTGG
966095 TTTTATTTGTTTTTTTGG
1 TTTT-TTTGTTTTTTTGG
966113 TTTTTTTGCTTTTTTTGG
1 TTTTTTTG-TTTTTTTGG
966131 T
1 T
966132 ACGAAGGATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 4 0.12
17 13 0.41
18 15 0.47
ACGTcount: A:0.06, C:0.02, G:0.13, T:0.79
Consensus pattern (17 bp):
TTTTTTTGTTTTTTTGG
Found at i:966125 original size:8 final size:8
Alignment explanation
Indices: 966079--966129 Score: 57
Period size: 9 Copynumber: 6.0 Consensus size: 8
966069 TGGACCCTTC
*
966079 TTTTTTTA
1 TTTTTTTG
*
966087 TTTATTTG
1 TTTTTTTG
966095 TTTTATTTG
1 TTTT-TTTG
966104 TTTTTTTGG
1 TTTTTTT-G
966113 TTTTTTTG
1 TTTTTTTG
966121 CTTTTTTTG
1 -TTTTTTTG
966130 GTACGAAGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
8 13 0.35
9 24 0.65
ACGTcount: A:0.06, C:0.02, G:0.12, T:0.80
Consensus pattern (8 bp):
TTTTTTTG
Found at i:969581 original size:15 final size:13
Alignment explanation
Indices: 969549--969574 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
969539 AATTTGGTCA
969549 TGTATCGATACAT
1 TGTATCGATACAT
969562 TGTATCGATACAT
1 TGTATCGATACAT
969575 CTTGTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:969681 original size:20 final size:21
Alignment explanation
Indices: 969634--969690 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
969624 GGCAATCACC
*
969634 TGTATCGATACATTCT-TTGCA
1 TGTATCGATACATT-TGGTGCA
*
969655 AGTATCGATACATTTGGT-CA
1 TGTATCGATACATTTGGTGCA
969675 TGTATCGATACATTTG
1 TGTATCGATACATTTG
969691 AAGGTGTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTTGGTGCA
Found at i:969698 original size:20 final size:20
Alignment explanation
Indices: 969656--969713 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
969646 TTCTTTGCAA
****
969656 GTATCGATACATTTGGTCAT
1 GTATCGATACATTTGAAGGT
969676 GTATCGATACATTTGAAGGT
1 GTATCGATACATTTGAAGGT
*
969696 GTATCAATACATTT-AAGG
1 GTATCGATACATTTGAAGG
969714 GTTTTGACCT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (20 bp):
GTATCGATACATTTGAAGGT
Found at i:970231 original size:24 final size:23
Alignment explanation
Indices: 970199--970266 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 23
970189 CATTTTCCTT
970199 TTCTCTCCCCCTTAATCAAAAAAA
1 TTCTCTCCCCCTTAAT-AAAAAAA
*
970223 TTCTCT-CCCCTT--TAATAAAA
1 TTCTCTCCCCCTTAATAAAAAAA
*
970243 TT-TCTCCCCCTTAATAAAACAA
1 TTCTCTCCCCCTTAATAAAAAAA
970265 TT
1 TT
970267 TCCTTTAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 3 0.08
20 14 0.37
21 1 0.03
22 8 0.21
23 6 0.16
24 6 0.16
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.35
Consensus pattern (23 bp):
TTCTCTCCCCCTTAATAAAAAAA
Found at i:970250 original size:19 final size:20
Alignment explanation
Indices: 970199--970261 Score: 74
Period size: 19 Copynumber: 3.0 Consensus size: 20
970189 CATTTTCCTT
970199 TTCTCTCCCCCTTAATCAAAAAAA
1 TTCTCTCCCCCTTAAT----AAAA
*
970223 TTCTCTCCCCTTTAATAAAA
1 TTCTCTCCCCCTTAATAAAA
970243 TT-TCTCCCCCTTAATAAAA
1 TTCTCTCCCCCTTAATAAAA
970262 CAATTTCCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
19 16 0.43
20 6 0.16
24 15 0.41
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.35
Consensus pattern (20 bp):
TTCTCTCCCCCTTAATAAAA
Found at i:972155 original size:13 final size:13
Alignment explanation
Indices: 972125--972174 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
972115 ATAAACCCTT
972125 TATCGATACAAATG
1 TATCGATAC-AATG
*
972139 TATCGATACACTG
1 TATCGATACAATG
972152 TATCGATACAATG
1 TATCGATACAATG
972165 TATCGATACA
1 TATCGATACA
972175 GAGAATGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
13 25 0.74
14 9 0.26
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:978356 original size:34 final size:32
Alignment explanation
Indices: 978313--978377 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
978303 TACAAGCCAA
978313 TGTATCGATACAAT-TTGGTCATGTATCGATACAT
1 TGTATCGATAC-ATCTT-GT-ATGTATCGATACAT
978347 TGTATCGATACATCTTGTATGTATCGATACA
1 TGTATCGATACATCTTGTATGTATCGATACA
978378 AACAGTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 13 0.43
33 4 0.13
34 13 0.43
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATCTTGTATGTATCGATACAT
Found at i:978366 original size:15 final size:13
Alignment explanation
Indices: 978334--978359 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
978324 AATTTGGTCA
978334 TGTATCGATACAT
1 TGTATCGATACAT
978347 TGTATCGATACAT
1 TGTATCGATACAT
978360 CTTGTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:981083 original size:37 final size:38
Alignment explanation
Indices: 981011--981085 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
981001 GTGGCTTCAT
* *
981011 CTTCATTCATCATTTCTTTTATCTTTTTCTAGCTCTAG
1 CTTCATTCACCATTTCTTTGATCTTTTTCTAGCTCTAG
981049 CTTCATTCACCATTTCTTTGA-CTTTTTCTAGCTCTAG
1 CTTCATTCACCATTTCTTTGATCTTTTTCTAGCTCTAG
981086 GTTCTTCGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 16 0.46
38 19 0.54
ACGTcount: A:0.16, C:0.25, G:0.07, T:0.52
Consensus pattern (38 bp):
CTTCATTCACCATTTCTTTGATCTTTTTCTAGCTCTAG
Found at i:984627 original size:33 final size:33
Alignment explanation
Indices: 984571--984637 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
984561 TTCAACGATT
*
984571 TGTATCGATACATAAAATGTTGTATTGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
984604 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
984637 T
1 T
984638 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:984678 original size:13 final size:13
Alignment explanation
Indices: 984660--984684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
984650 CAAAAAAAAA
984660 TGTATCGATACAT
1 TGTATCGATACAT
984673 TGTATCGATACA
1 TGTATCGATACA
984685 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:984749 original size:51 final size:51
Alignment explanation
Indices: 984693--984816 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 51
984683 CACTGATCTT
*
984693 TGTATCGATACATGCAGGCAATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAATTTGCCCAGATGTATCGATACACTATT-AAA
*
984744 TGTATCGATACATGCAGGTAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGG-CAATTTGCCCAGATGTATCGATACACTATTAAA
*
984796 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
984817 CTTTTCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
51 20 0.30
52 44 0.66
53 3 0.04
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (51 bp):
TGTATCGATACATGCAGGCAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:992024 original size:20 final size:20
Alignment explanation
Indices: 992001--992053 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
991991 TAGTGAAGAG
* *
992001 TGTATCAATACATTCATACA
1 TGTATCAATACATTCAAAAA
*
992021 TGTATCAATACATTGAAAAA
1 TGTATCAATACATTCAAAAA
992041 TGTATCAATACAT
1 TGTATCAATACAT
992054 CTAGGTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (20 bp):
TGTATCAATACATTCAAAAA
Found at i:996672 original size:155 final size:154
Alignment explanation
Indices: 995947--996825 Score: 478
Period size: 155 Copynumber: 5.8 Consensus size: 154
995937 TTAAGGGTAA
* *** *
995947 TTTGGTAATTT-TTTTAGAACCAAGTCTGATGTAGTCATTGGGATGCTTTTATGCCAAAGGTGTT
1 TTTGGTAATTTCTTTTAGAACCGAGTCTGATGTAGTCATCAAGATGCTTTTATGCCAAAGGTGTG
** * * * ** *
996011 CATTTAGG-CTAGTTCA-CCTTTCTATGGTTATTTTTA-TTTTTTAAGGCTATCGAGATACTTTT
66 CATTTAGGAGAAGTTCACCCTTT-TATGATCATTTTAAGTCCTTTAAGGTTATCGAGATACTTTT
* * * *
996073 CTATCAAA--AGTA--T-AAGGGCAT
130 ATGTTAAAGTA-TACCTCAAAGGCAT
* * * * * * *
996094 TTTGGTAATTT-TTTTAAAACCAAAT-TCGATATAGTTATCAAGATGCTTTTATGCCAAAGATAT
1 TTTGGTAATTTCTTTTAGAACCGAGTCT-GATGTAGTCATCAAGATGCTTTTATGCCAAAGGTGT
* * * ** * *
996157 GCATTTAGG-GTAGTTTTACCCTTTTATAATTGTTTTCAAGTCTTTTAGGGTTATCGAGATACTT
65 GCATTTAGGAGAAG-TTCACCCTTTTATGATCATTTT-AAGTCCTTTAAGGTTATCGAGATACTT
* * *
996221 TCATGTTAAAGGTATACCT-TAATGCTAT
128 TTATGTTAAA-GTATACCTCAAAGGC-AT
* * ** * * * * * **
996249 TTTGGTAATTTCTCTTATAATTGAGTCTGATGTAGTCACCAAGGTACTGTTATGCTAAAAATGTG
1 TTTGGTAATTTCTTTTAGAACCGAGTCTGATGTAGTCATCAAGATGCTTTTATGCCAAAGGTGTG
* * * * ** *
996314 CATTTAGTA-AAGGTTCACCCTTTTATTATCATTTTTGAGT-CTTTTAGAGTTGCCAAGATA-TT
66 CATTTAGGAGAA-GTTCACCCTTTTATGATCA-TTTTAAGTCCTTTAAG-GTTATCGAGATACTT
* *
996376 TTCATGTTAAAGGTATACCCCAAAAGCAT
128 TT-ATGTTAAA-GTATACCTCAAAGGCAT
* ** * * * *
996405 TTTCGTAATTTC-CCTAAAACTGAG--T--TGTAGTCA-CTAGGATG-TTTCTATGCCAAAAGTG
1 TTTGGTAATTTCTTTTAGAACCGAGTCTGATGTAGTCATC-AAGATGCTTT-TATGCCAAAGGTG
* * * * * * * *
996463 TGTATTTATGATAGGTTCATCCTTCTATGATC-TTTTCGAGTCCTTTAAGGTTATCGAGTTACTT
64 TGCATTTAGGAGAAGTTCACCCTTTTATGATCATTTT-AAGTCCTTTAAGGTTATCGAGATACTT
*
996527 TTATGTTGAAAGTGTACCTCAAAGGCAT
128 TTATGTT-AAAGTATACCTCAAAGGCAT
* *
996555 TTTGGTAATTTCTTTTAGAATCGAGTCTAATGTAGTCATCAAGATGCTTTTATGCCAAAGGTGTG
1 TTTGGTAATTTCTTTTAGAACCGAGTCTGATGTAGTCATCAAGATGCTTTTATGCCAAAGGTGTG
* * * * * *
996620 CTTTTAGGAGAAGTTCACCCTTTGATTATCATTTTAATTCCTTTAAGGTTATCAAGATACTTTCA
66 CATTTAGGAGAAGTTCACCCTTTTATGATCATTTTAAGTCCTTTAAGGTTATCGAGATACTTTTA
** * * *
996685 CATCGAAAGTATACCTCACAGGAAT
131 TGT-TAAAGTATACCTCAAAGGCAT
* * * * * * * * * * * * *
996710 TTTTGTAATTTC-CTAAAAAACAAGTTTGATATAGTCA-CTAGGATGCTTTCACGCAAAAAGTGT
1 TTTGGTAATTTCTTTTAGAACCGAGTCTGATGTAGTCATC-AAGATGCTTTTATGCCAAAGGTGT
* * * * * * *
996773 GCATTTAGGATAGGTTCACCTTTTTATTATCGTTTTTGAGTTCTTTAAGGTTA
65 GCATTTAGGAGAAGTTCACCCTTTTATGATC-ATTTTAAGTCCTTTAAGGTTA
996826 CTGAAGTACT
Statistics
Matches: 561, Mismatches: 134, Indels: 66
0.74 0.18 0.09
Matches are distributed among these distances:
146 1 0.00
147 63 0.11
148 12 0.02
149 10 0.02
150 72 0.13
151 65 0.12
152 3 0.01
153 4 0.01
154 66 0.12
155 148 0.26
156 107 0.19
157 10 0.02
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (154 bp):
TTTGGTAATTTCTTTTAGAACCGAGTCTGATGTAGTCATCAAGATGCTTTTATGCCAAAGGTGTG
CATTTAGGAGAAGTTCACCCTTTTATGATCATTTTAAGTCCTTTAAGGTTATCGAGATACTTTTA
TGTTAAAGTATACCTCAAAGGCAT
Found at i:996866 original size:154 final size:154
Alignment explanation
Indices: 996156--996908 Score: 502
Period size: 155 Copynumber: 4.9 Consensus size: 154
996146 GCCAAAGATA
* * * * * * *
996156 TGCATTTAGGGTAGTTTTACCCTTTTATAAT-TGTTTTCAAG-TCTTTTAGGGTTATCGAGATAC
1 TGCATTTAGGATAGGTTCACCCTTTTATTATCT-TTTT-GAGTTC-TTTAAGGTTATCAAGATAC
* * * * * * *** *
996219 TTTCATGT-TAAAGGTATACCT-TAATGCTATTTTGGTAATTTCTCTTATAATTGAGTCTGATGT
63 TTTCATGTCGAAA-GTATACCTCAAAGGC-ATTTTCGTAATTTC-CCTAAAAACAAGTTTGATGT
* *
996282 AGTCACCAAGG-TACTGTT-ATGCTAAAAA-TG
125 AGTCA-CTAGGATGCT-TTCATGC-AAAAAGTG
* * * ** *
996312 TGCATTTAGTAAAGGTTCACCCTTTTATTATCATTTTTGAG-TCTTTTAGAGTTGCCAAGATATT
1 TGCATTTAGGATAGGTTCACCCTTTTATTATC-TTTTTGAGTTCTTTAAG-GTTATCAAGATACT
* * * *
996376 TTCATGT-TAAAGGTATACCCCAAAAGCATTTTCGTAATTTCCCT-AAAACTGAG--T--TGTAG
64 TTCATGTCGAAA-GTATACCTCAAAGGCATTTTCGTAATTTCCCTAAAAAC-AAGTTTGATGTAG
*
996435 TCACTAGGATG-TTTCTATGCCAAAAGTG
127 TCACTAGGATGCTTTC-ATGCAAAAAGTG
* * * * * * * * *
996463 TGTATTTATGATAGGTTCATCCTTCTATGATCTTTTCGAGTCCTTTAAGGTTATCGAGTTACTTT
1 TGCATTTAGGATAGGTTCACCCTTTTATTATCTTTTTGAGTTCTTTAAGGTTATCAAGATACTTT
* * * * ** * * * * *
996528 TATGTTGAAAGTGTACCTCAAAGGCATTTTGGTAATTTCTTTTAGAATCGAGTCTAATGTAGTCA
66 CATGTCGAAAGTATACCTCAAAGGCATTTTCGTAATTTC-CCTAAAAACAAGTTTGATGTAGTCA
* * * *
996593 -TCAAGATGCTTTTATGCCAAAGGTG
130 CT-AGGATGCTTTCATGCAAAAAGTG
* * * * * *
996618 TGCTTTTAGGAGAAGTTCACCCTTTGATTATCATTTT-AATTCCTTTAAGGTTATCAAGATACTT
1 TGCATTTAGGATAGGTTCACCCTTTTATTATCTTTTTGAGTT-CTTTAAGGTTATCAAGATACTT
** * * * *
996682 TCACATCGAAAGTATACCTCACAGGAATTTTTGTAATTT-CCTAAAAAACAAGTTTGATATAGTC
65 TCATGTCGAAAGTATACCTCAAAGGCATTTTCGTAATTTCCCT-AAAAACAAGTTTGATGTAGTC
*
996746 ACTAGGATGCTTTCACGCAAAAAGTG
129 ACTAGGATGCTTTCATGCAAAAAGTG
* *
996772 TGCATTTAGGATAGGTTCACCTTTTTATTATCGTTTTTGAGTTCTTTAAGGTTACTGAAG-TACT
1 TGCATTTAGGATAGGTTCACCCTTTTATTATC-TTTTTGAGTTCTTTAAGGTTA-TCAAGATACT
* * * * * * *
996836 TTCATGTCGAAGGCATACC-CAAAGGTATTTTCGTGATTTCCCTATAATCAAGTTCGATGTAGTC
64 TTCATGTCGAAAGTATACCTCAAAGGCATTTTCGTAATTTCCCTAAAAACAAGTTTGATGTAGTC
996900 ACTAGGATG
129 ACTAGGATG
996909 TTTTTTGTCA
Statistics
Matches: 463, Mismatches: 108, Indels: 54
0.74 0.17 0.09
Matches are distributed among these distances:
149 2 0.00
150 56 0.12
151 53 0.11
152 3 0.01
153 3 0.01
154 108 0.23
155 148 0.32
156 81 0.17
157 8 0.02
158 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (154 bp):
TGCATTTAGGATAGGTTCACCCTTTTATTATCTTTTTGAGTTCTTTAAGGTTATCAAGATACTTT
CATGTCGAAAGTATACCTCAAAGGCATTTTCGTAATTTCCCTAAAAACAAGTTTGATGTAGTCAC
TAGGATGCTTTCATGCAAAAAGTG
Found at i:1000932 original size:13 final size:13
Alignment explanation
Indices: 1000914--1000939 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1000904 CAATTTTTTG
1000914 TGTATCGATACAT
1 TGTATCGATACAT
1000927 TGTATCGATACAT
1 TGTATCGATACAT
1000940 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1001687 original size:21 final size:21
Alignment explanation
Indices: 1001646--1001689 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1001636 CTCCCCTTTA
* *
1001646 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1001667 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1001688 TC
1 TC
1001690 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1003512 original size:13 final size:13
Alignment explanation
Indices: 1003494--1003532 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
1003484 ATAATCCCCC
1003494 TGTATCGATACAA
1 TGTATCGATACAA
1003507 TGTATCGATACAA
1 TGTATCGATACAA
1003520 TGTATCGATACAA
1 TGTATCGATACAA
1003533 AGAAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1007429 original size:21 final size:21
Alignment explanation
Indices: 1007400--1007444 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1007390 AAGTTTTCAT
*
1007400 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1007420 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1007442 TTT
1 TTT
1007445 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1010559 original size:13 final size:13
Alignment explanation
Indices: 1010541--1010566 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1010531 TACACAAAGT
1010541 ATGTATCGATACA
1 ATGTATCGATACA
1010554 ATGTATCGATACA
1 ATGTATCGATACA
1010567 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1010564 original size:32 final size:33
Alignment explanation
Indices: 1010523--1010586 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1010513 TAGCCAAACT
**
1010523 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1010555 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1010587 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1012819 original size:21 final size:21
Alignment explanation
Indices: 1012786--1012835 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
1012776 TTGCAAGTTG
*
1012786 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1012808 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
1012829 AAATAAA
1 AAATAAA
1012836 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1016752 original size:13 final size:13
Alignment explanation
Indices: 1016730--1016767 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
1016720 CATTTTTCTT
*
1016730 TGTATTGATACAA
1 TGTATCGATACAA
*
1016743 TGTATCGATACAC
1 TGTATCGATACAA
1016756 TGTATCGATACA
1 TGTATCGATACA
1016768 GGGGGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1016919 original size:20 final size:20
Alignment explanation
Indices: 1016876--1016921 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1016866 AAATCTTTTG
1016876 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1016897 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1016917 CAAAA
1 CAAAA
1016922 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1019357 original size:20 final size:20
Alignment explanation
Indices: 1019312--1019363 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1019302 GTAGCCAAAC
**
1019312 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
1019332 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
1019351 TTGTATCGATACA
1 TTGTATCGATACA
1019364 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Done.