Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold333
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 853475
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 6
Found at i:666976 original size:51 final size:51
Alignment explanation
Indices: 666915--667023 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
666905 ATTTTCGAGG
* *
666915 GGATACTCCAACCCC-AGTTTTATTTCTAAAATACCAATTTTTCACAATCGA
1 GGATACTCCAACCCCGA-TTTTATTTCCAAAACACCAATTTTTCACAATCGA
* * * *
666966 GGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGG
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGA
667017 GGATACT
1 GGATACT
667024 TTAATCCCGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 50 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (51 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGA
Found at i:666991 original size:130 final size:130
Alignment explanation
Indices: 666836--667147 Score: 468
Period size: 130 Copynumber: 2.4 Consensus size: 130
666826 TTCATCTTGG
* *
666836 GGATACTCCAACCCCGATCTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTTTAATCC
1 GGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTTTAATCC
* *
666901 CATTATTT-TCGAGGGGATACTCCAACCCC-AGTTTTATTTCTAAAATACCAATTTT-TCACAAT
66 CATTATTTCT-AAGGGGATACTCCAACCCCGA-TTTTATTTCTAAAACACCAATTTTCT-ACAAT
666963 CGA
128 CGA
666966 GGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTTTAATCC
1 GGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTTTAATCC
* * *
667031 CGTTATTTCTAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCTACAATTGG
66 CATTATTTCTAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCTACAATCGA
* * * *
667096 GGATACTCCAACTCCGATTTTATTTTCTAAAACACCAATTTTCCACAATCGG
1 GGATACTCCAACTCCGATTTTA-TTTCCAAAACATCAATTTTTCATAATCGG
667148 AAATACTCCA
Statistics
Matches: 167, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
130 139 0.83
131 28 0.17
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.34
Consensus pattern (130 bp):
GGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTTTAATCC
CATTATTTCTAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCTACAATCGA
Found at i:667154 original size:52 final size:51
Alignment explanation
Indices: 667043--667261 Score: 332
Period size: 51 Copynumber: 4.3 Consensus size: 51
667033 TTATTTCTAA
* * *
667043 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCTACAATT
1 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
667094 GGGGATACTCCAACTCCGATTTTATTTTCTAAAACACCAATTTTCCACAATC
1 GGGGATACTCCAACTCCGATTTTA-TTTCTAAAACACCAATTTTCCACAATC
** * *
667146 GGAAATACTCCAACTCTGATTTTATTT-TCAAAACACCAATCTTCCACAATC
1 GGGGATACTCCAACTCCGATTTTATTTCT-AAAACACCAATTTTCCACAATC
* *
667197 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCATAATC
1 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
667248 GGGGATACTCCAAC
1 GGGGATACTCCAAC
667262 CCCGTTGTTT
Statistics
Matches: 152, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
50 1 0.01
51 104 0.68
52 47 0.31
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
Found at i:667241 original size:103 final size:102
Alignment explanation
Indices: 667047--667265 Score: 325
Period size: 103 Copynumber: 2.1 Consensus size: 102
667037 TTCTAAGGGG
* * *
667047 ATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCTACAATTGGGGATACTCCAACTCCG
1 ATACTCCAACCCCGATTTTATTTCTAAAACACCAATCTTCCACAATCGGGGATACTCCAACTCCG
667112 ATTTTATTTTCTAAAACACCAATTTTCCACAATCGGAA
66 ATTTTATTTTCTAAAACACCAATTTT-CACAATCGGAA
* *
667150 ATACTCCAACTCTGATTTTATTT-TCAAAACACCAATCTTCCACAATCGGGGATACTCCAACTCC
1 ATACTCCAACCCCGATTTTATTTCT-AAAACACCAATCTTCCACAATCGGGGATACTCCAACTCC
* **
667214 GATTTTA-TTTCTAAAACACCAATTTTTCATAATCGGGG
65 GATTTTATTTTCTAAAACACCAA-TTTTCACAATCGGAA
667252 ATACTCCAACCCCG
1 ATACTCCAACCCCG
667266 TTGTTTCATT
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
102 36 0.35
103 68 0.65
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (102 bp):
ATACTCCAACCCCGATTTTATTTCTAAAACACCAATCTTCCACAATCGGGGATACTCCAACTCCG
ATTTTATTTTCTAAAACACCAATTTTCACAATCGGAA
Found at i:667328 original size:79 final size:78
Alignment explanation
Indices: 667197--667498 Score: 299
Period size: 79 Copynumber: 3.8 Consensus size: 78
667187 TTCCACAATC
* * * * * *
667197 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCTAAAACATCGATTTCTCACAATCGGGGATACTCCAAC
*
667262 CCCGTTGTTTCATT
66 CCCGTTATTTC-TT
* * * * *
667276 GGGGATACTCCAACCCCGACTTTATTCCTAAAATATTGATCTCTCACAATCGGGCATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCTAAAACATCGATTTCTCACAATCGGGGATACTCCAAC
* **
667341 CCTGTTATTTCCGC
66 CCCGTTATTT-CTT
* * * *
667355 GGGGATACTCCAACCCC-AGCCTTATTTCTAAAGCATCGATTTC-CACAATCGGGGATGCTTCAA
1 GGGGATACTCCAACCCCGA-CTTTATTTCTAAAACATCGATTTCTCACAATCGGGGATACTCCAA
667418 CCCCGTTATTT-TT
65 CCCCGTTATTTCTT
* * * *
667431 GAGGGGATACTCTAACCCCGATTTTATTT-TCAAAACATCGATTT-TCTATAATCAGGGATACTC
1 --GGGGATACTCCAACCCCGACTTTATTTCT-AAAACATCGATTTCTC-ACAATCGGGGATACTC
667494 CAACC
62 CAACC
667499 TCGATTTTAT
Statistics
Matches: 180, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
77 1 0.01
78 63 0.35
79 115 0.64
80 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGACTTTATTTCTAAAACATCGATTTCTCACAATCGGGGATACTCCAAC
CCCGTTATTTCTT
Found at i:667504 original size:51 final size:51
Alignment explanation
Indices: 667434--667559 Score: 157
Period size: 51 Copynumber: 2.5 Consensus size: 51
667424 TATTTTTGAG
* * *
667434 GGGATACTCTAACCCCGATTTTA-TTTTCAAAACATCGATTTTCTATAATCA
1 GGGATACTCCAACCCCGATTTTATTTTTC-AAACACCGATTTTCCATAATCA
* * *
667485 GGGATACTCCAACCTCGATTTTATTTTTCGAACACCGATTTTCCATAATCG
1 GGGATACTCCAACCCCGATTTTATTTTTCAAACACCGATTTTCCATAATCA
*
667536 GGGATACTCCAGCCCC-ATTGTTAT
1 GGGATACTCCAACCCCGATT-TTAT
667560 CTCCAAAATG
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
50 3 0.05
51 57 0.88
52 5 0.08
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATTTTATTTTTCAAACACCGATTTTCCATAATCA
Found at i:669307 original size:34 final size:35
Alignment explanation
Indices: 669238--669310 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
669228 GGTGATTGTG
*
669238 GAAAGAATAAGCACAAAGGAATACAAATGAGCTTT
1 GAAAGAATAAGCACAAAGGAATACAAAAGAGCTTT
**
669273 GAAAGAATAA-CAACAAA-GAATACAAAAGCTCTTT
1 GAAAGAATAAGC-ACAAAGGAATACAAAAGAGCTTT
669307 GAAA
1 GAAA
669311 TGTAGAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 19 0.56
35 15 0.44
ACGTcount: A:0.55, C:0.12, G:0.16, T:0.16
Consensus pattern (35 bp):
GAAAGAATAAGCACAAAGGAATACAAAAGAGCTTT
Found at i:678075 original size:13 final size:13
Alignment explanation
Indices: 678034--678094 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
678024 CGTTACAAGC
678034 CAATGTATCGATA
1 CAATGTATCGATA
*
678047 CAAT-T-T-GGT-
1 CAATGTATCGATA
678056 C-ATGTATCGATA
1 CAATGTATCGATA
678068 CAATGTATCGATA
1 CAATGTATCGATA
678081 CAATGTATCGATA
1 CAATGTATCGATA
678094 C
1 C
678095 TATGCATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 2 0.05
9 2 0.05
10 3 0.07
11 3 0.07
12 2 0.05
13 29 0.71
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:685419 original size:28 final size:28
Alignment explanation
Indices: 685387--685456 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
685377 AATAAAGTCA
** *
685387 GGGTTGGAGTATCCCCTCGGAAGTAACG
1 GGGTTGGAGTATCCCCGAGGAAATAACG
*
685415 GGGTTGGAGTATCCCCGATGAAATAACG
1 GGGTTGGAGTATCCCCGAGGAAATAACG
*
685443 AGGTTGGAGTATCC
1 GGGTTGGAGTATCC
685457 TCGATTATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCGAGGAAATAACG
Found at i:685500 original size:107 final size:107
Alignment explanation
Indices: 685314--685508 Score: 241
Period size: 107 Copynumber: 1.8 Consensus size: 107
685304 GTCAGGATTA
* * *
685314 GAGTATCCCCGTGAAAATAATGGGGTTAGAGTATCCCCAATTATGAGAAATCAATATGTTAGAAA
1 GAGTATCCCCGTGAAAATAACGAGGTTAGAGTATCCCCAATTATGAAAAATCAATATGTTAGAAA
* *
685379 TAAAGTCAGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTG
66 TAAAATCAGGGTTGGAATATCCCCTCGGAAGTAACGGGGTTG
* * * * * * * *
685421 GAGTATCCCCGATG-AAATAACGAGGTTGGAGTATCCTCGATTATGAAAAATTAGTGTTTTGGAA
1 GAGTATCCCCG-TGAAAATAACGAGGTTAGAGTATCCCCAATTATGAAAAATCAATATGTTAGAA
685485 ATAAAATC-GGAGTTGGAATATCCC
65 ATAAAATCAGG-GTTGGAATATCCC
685509 TGATTGTGGA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
106 2 0.03
107 69 0.95
108 2 0.03
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (107 bp):
GAGTATCCCCGTGAAAATAACGAGGTTAGAGTATCCCCAATTATGAAAAATCAATATGTTAGAAA
TAAAATCAGGGTTGGAATATCCCCTCGGAAGTAACGGGGTTG
Found at i:685529 original size:51 final size:51
Alignment explanation
Indices: 685444--685658 Score: 251
Period size: 51 Copynumber: 4.3 Consensus size: 51
685434 GAAATAACGA
*
685444 GGTTGGAGTAT-CCTCGATTATGAAAAATTAGTGTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCT-GATTATGAAAAATTAGTGTTTTAGAAATAAAATCGG
* * * * * * * *
685495 AGTTGGAATATCCCTGATTGTGGAGAATTGGTGTTTTAAAAATAAAACCGG
1 GGTTGGAGTATCCCTGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGG
* *
685546 GGTTTGAGTATCCCTGATTATGAAAAATTAATGTTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCCTGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGG
* *
685597 GGTTGGAGTATCCCCG---ATGAAAAATT-GATGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCTGATTATGAAAAATTAG-TGTTTTAGAAATAAAATCGG
*
685645 GGTTGGAGTGTCCC
1 GGTTGGAGTATCCC
685659 CTCGAAGATA
Statistics
Matches: 138, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
48 42 0.30
51 93 0.67
52 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCTGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGG
Found at i:685573 original size:102 final size:100
Alignment explanation
Indices: 685444--685663 Score: 291
Period size: 102 Copynumber: 2.2 Consensus size: 100
685434 GAAATAACGA
* *
685444 GGTTGGAGTAT-CCTCGATTATGAAAAATTAGTGTTTTGGAAATAAAATCGGAGTTGGAATATCC
1 GGTTGGAGTATCCCTCGATTATGAAAAATTAATGTTTTAGAAATAAAATCGGAGTTGGAATATCC
* * * *
685508 CTGATTGTGGAGAATTGGTGTTTTAAAAATAAAACCGG
66 CCGA---TGAAAAATTGATGTTTTAAAAATAAAACCGG
* * *
685546 GGTTTGAGTATCCCT-GATTATGAAAAATTAATGTTTTAGAAATAAAATCGGGGTTGGAGTATCC
1 GGTTGGAGTATCCCTCGATTATGAAAAATTAATGTTTTAGAAATAAAATCGGAGTTGGAATATCC
*
685610 CCGATGAAAAATTGATGTTTTAGAAATAAAACCGG
66 CCGATGAAAAATTGATGTTTTAAAAATAAAACCGG
*
685645 GGTTGGAGTGTCCCCTCGA
1 GGTTGGAGTAT-CCCTCGA
685664 AGATAACGGG
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
99 36 0.35
100 4 0.04
101 2 0.02
102 58 0.56
103 3 0.03
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (100 bp):
GGTTGGAGTATCCCTCGATTATGAAAAATTAATGTTTTAGAAATAAAATCGGAGTTGGAATATCC
CCGATGAAAAATTGATGTTTTAAAAATAAAACCGG
Found at i:685721 original size:229 final size:229
Alignment explanation
Indices: 685413--685852 Score: 605
Period size: 229 Copynumber: 1.9 Consensus size: 229
685403 TCGGAAGTAA
* *
685413 CGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTATGAAAAATTAGTGT
1 CGGGGTTGGAGTATCCCC-ATGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAGTGT
* * * * *
685478 TTTGGAAATAAAATCGGAGTTGGAATATCCCTGATTGTGGAGAATTGGTGTTTTAAAAATAAAAC
65 TTTGGAAATAAAATCAGAGTTGGAATATCCCCGATTATGGAAAATGGGTGTTTTAAAAATAAAAC
* * * * * *
685543 CGGGGTTTGAGTATCCCTGATTATGAAAAATTAATGTTTTAGAAATAAAATCGGGGTTGGAGTAT
130 CGGAGTTGGAGTATCCCCGATTAAGAAAAATTAATGTTTTAGAAATAAAACCGGGATTGGAGTAT
685608 CCCC-GATGAAAAATTGATGTTTTAGAAATAAAAC
195 CCCCAGATGAAAAATTGATGTTTTAGAAATAAAAC
* * * * *
685642 CGGGGTTGGAGTGTCCCC-TCGAAGATAACGGGGTTGGAGTATCCCCGATTTTGAAAAGTCGGTG
1 CGGGGTTGGAGTATCCCCAT-GAA-ATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAGTG
* *
685706 TTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAA
64 TTTTGGAAATAAAATCAGAGTTGGAATATCCCCGATTATGGAAAATGGGTGTTTTAAAAATAAAA
** * * *
685771 TTGGAGTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAACCGGGATTGGAGTA
129 CCGGAGTTGGAGTATCCCCGATTAAGAAAAATTAATGTTTTAGAAATAAAACCGGGATTGGAGTA
685836 TCCCCGAGATGAAAAAT
194 TCCCC-AGATGAAAAAT
685853 CTAGAAATTT
Statistics
Matches: 182, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
227 1 0.01
228 3 0.02
229 168 0.92
231 10 0.05
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (229 bp):
CGGGGTTGGAGTATCCCCATGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAGTGTT
TTGGAAATAAAATCAGAGTTGGAATATCCCCGATTATGGAAAATGGGTGTTTTAAAAATAAAACC
GGAGTTGGAGTATCCCCGATTAAGAAAAATTAATGTTTTAGAAATAAAACCGGGATTGGAGTATC
CCCAGATGAAAAATTGATGTTTTAGAAATAAAAC
Found at i:685729 original size:79 final size:76
Alignment explanation
Indices: 685594--685738 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 76
685584 GAAATAAAAT
* * * *
685594 CGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCC
1 CGGGGTTGGAGTATCCCCGATGAAAAATCGATGTTTTAGAAATAAAACCAGAGTTGGAGTATCCC
685659 CTCGAAGATAA
66 CTCGAAGATAA
* * * *
685670 CGGGGTTGGAGTATCCCCGATTTTGAAAAGTCGGTGTTTTGGAAATAAAATCAGAGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGA---TGAAAAATCGATGTTTTAGAAATAAAACCAGAGTTGGAGTAT
685735 CCCC
63 CCCC
685739 GATTATGGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
76 20 0.34
79 38 0.66
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (76 bp):
CGGGGTTGGAGTATCCCCGATGAAAAATCGATGTTTTAGAAATAAAACCAGAGTTGGAGTATCCC
CTCGAAGATAA
Found at i:685757 original size:51 final size:51
Alignment explanation
Indices: 685674--685842 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
685664 AGATAACGGG
*
685674 GTTGGAGTATCCCCGATT-TTGAAAAGTCGGTGTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTATGGAAAA-TCGGTGTTTTGGAAATAAAATCAGA
* * **
685725 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATTGGA
1 GTTGGAGTATCCCCGATTATGGAAAATCGGTGTTTTGGAAATAAAATCAGA
* * * * * * *
685776 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAA-CCGG
1 GTTGGAGTATCCCCGATTATGGAAAATCGGTGTTTTGGAAATAAAATCAGA
685826 GATTGGAGTATCCCCGA
1 G-TTGGAGTATCCCCGA
685843 GATGAAAAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
50 2 0.02
51 94 0.92
52 6 0.06
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGGAAAATCGGTGTTTTGGAAATAAAATCAGA
Found at i:686697 original size:19 final size:18
Alignment explanation
Indices: 686672--686739 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
686662 AATTCAACGA
686672 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
686690 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
686706 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
686722 TATTGTATCAATACATAA
1 T-TTGTATCGATACATAA
686740 TTAGCTACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
18 1 0.02
19 26 0.62
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:686710 original size:32 final size:32
Alignment explanation
Indices: 686674--686736 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
686664 TTCAACGATT
* *
686674 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCAATACAA
686706 TGTATCGATACATAAGTATTGTATCAATACA
1 TGTATCGATACATAAGTATTGTATCAATACA
686737 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCAATACAA
Found at i:686711 original size:13 final size:13
Alignment explanation
Indices: 686693--686717 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
686683 ACATAAGTGT
686693 TGTATCGATACAA
1 TGTATCGATACAA
686706 TGTATCGATACA
1 TGTATCGATACA
686718 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:695147 original size:34 final size:34
Alignment explanation
Indices: 695074--695377 Score: 429
Period size: 34 Copynumber: 9.0 Consensus size: 34
695064 AGTGGTAATC
* **
695074 TCTTCTCAAAGCCCACCACTCTATGGCACC-TTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
*
695107 TCTTTTGAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
* *
695141 TCTTTTGAAAGCCCACCACTCCGTGGTACC-TTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
695174 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
695208 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
695242 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
*
695276 TCTTTTCAAAGCCCACCATTCCGTGGCATCC-TTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCA-CCTTTT
* * *
695310 TC--TTCAAAGTCCACGACTCTGTGGCACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
* * * *
695342 TCTTCTCAAAGTCCACAACTTCGTGGCACTCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCAC-CTTTT
695377 T
1 T
695378 AAAGCCCACA
Statistics
Matches: 248, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
31 2 0.01
32 25 0.10
33 57 0.23
34 156 0.63
35 8 0.03
ACGTcount: A:0.18, C:0.36, G:0.12, T:0.34
Consensus pattern (34 bp):
TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
Found at i:695189 original size:67 final size:67
Alignment explanation
Indices: 695074--695405 Score: 442
Period size: 67 Copynumber: 5.0 Consensus size: 67
695064 AGTGGTAATC
* ** *
695074 TCTTCTCAAAGCCCACCACTCTATGGCACCTTTTCTTTTGAAAGCCCACCACTCCGTGGCACCTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTT
695139 TT
66 TT
* *
695141 TCTTTTGAAAGCCCACCACTCCGTGGTACCTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTT
695206 TT
66 TT
695208 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACC-TTTTCTTTTCAAAGCCCACCACTCCGTGGCACCT
695273 TTT
65 TTT
* * * *
695276 TCTTTTCAAAGCCCACCATTCCGTGGCATCCTTTTC--TTCAAAGTCCACGACTCTGTGGCACCT
1 TCTTTTCAAAGCCCACCACTCCGTGGCA-CCTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCT
695339 TTT
65 TTT
* * * * * * * *
695342 TCTTCTCAAAGTCCACAACTTCGTGGCA-C---TCTTTTTAAAGCCCACAACTCTGTGGCACCCT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTT
695403 TT
66 TT
695405 T
1 T
695406 AAGTCCATGA
Statistics
Matches: 240, Mismatches: 21, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
61 2 0.01
63 27 0.11
64 1 0.00
66 50 0.21
67 89 0.37
68 69 0.29
69 2 0.01
ACGTcount: A:0.19, C:0.36, G:0.13, T:0.33
Consensus pattern (67 bp):
TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTT
TT
Found at i:695386 original size:29 final size:29
Alignment explanation
Indices: 695277--695405 Score: 80
Period size: 29 Copynumber: 4.2 Consensus size: 29
695267 GCACCTTTTT
* * * *
695277 CTTTTCAAAGCCCACCATTCCGTGGCATCC
1 CTTTTTAAAGCCCACAACTCTGTGGCA-CC
* * *
695307 TTTTCTTCAAAGTCCACGACTCTGTGGCACC
1 CTTT-TT-AAAGCCCACAACTCTGTGGCACC
* * *
695338 TTTTTCTTCTCAAAGTCCACAACT-TCGTGGCACT
1 --CTT-TT-T-AAAGCCCACAACTCT-GTGGCACC
695372 CTTTTTAAAGCCCACAACTCTGTGGCACC
1 CTTTTTAAAGCCCACAACTCTGTGGCACC
695401 CTTTT
1 CTTTT
695406 AAGTCCATGA
Statistics
Matches: 80, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
29 24 0.30
30 5 0.06
31 5 0.06
32 19 0.24
33 5 0.06
34 22 0.28
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (29 bp):
CTTTTTAAAGCCCACAACTCTGTGGCACC
Found at i:695443 original size:34 final size:34
Alignment explanation
Indices: 695400--695493 Score: 170
Period size: 34 Copynumber: 2.8 Consensus size: 34
695390 TCTGTGGCAC
*
695400 CCTTTTAAGTCCATGACTCCGTGGCATCCTTGTT
1 CCTTTTAAGTCCATAACTCCGTGGCATCCTTGTT
695434 CCTTTTAAGTCCATAACTCCGTGGCATCCTTGTT
1 CCTTTTAAGTCCATAACTCCGTGGCATCCTTGTT
*
695468 CCTTTTAAGTCCATAACTCTGTGGCA
1 CCTTTTAAGTCCATAACTCCGTGGCA
695494 CCCTCATCTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (34 bp):
CCTTTTAAGTCCATAACTCCGTGGCATCCTTGTT
Found at i:695561 original size:49 final size:49
Alignment explanation
Indices: 695489--697057 Score: 1856
Period size: 49 Copynumber: 33.3 Consensus size: 49
695479 CATAACTCTG
*
695489 TGGCACCCTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
695538 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
695587 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
** * *
695630 TGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
695679 TGG-----T-ACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
695722 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACC--TT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
695774 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
695817 TGGCACCTTCTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
695866 TGGTACCTTCTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * * *
695915 TGGCACCTTCTTCTTTAAATCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
695964 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
696007 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
696056 T-GCA----C--CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
696098 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
696147 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
696190 TGGCACCTTTTCCATCTTCAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACC--TT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
696242 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
696285 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACC--TT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
696337 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
696380 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACC--TT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
696432 TAGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
696475 TGGCACCTTTTCCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACC--TT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * * *
696527 TGGCATCTTCATCTTTAAGTCCAATGTAACTGGCCTTGAATCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
696576 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * ** * *
696619 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGTCTTAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
696668 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGGATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
696711 TAGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
696760 TGGCACATTTTCCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCAC--CTT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * * *
696812 TGGCATCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
696861 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGTATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * * *
696904 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
696953 TGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
696996 TGGCACCTTCATCTTTAAGTCCAATATCGCTGGCTTTGACTCAGCATAT
1 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
697045 TGGCGCCCTCATC
1 TGGCACCTTCATC
697058 ATTTTTAAAA
Statistics
Matches: 1323, Mismatches: 100, Indels: 194
0.82 0.06 0.12
Matches are distributed among these distances:
42 37 0.03
43 467 0.35
44 1 0.00
45 10 0.01
47 6 0.00
48 3 0.00
49 543 0.41
50 9 0.01
51 2 0.00
52 245 0.19
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
Found at i:695658 original size:92 final size:92
Alignment explanation
Indices: 695501--697048 Score: 1913
Period size: 92 Copynumber: 16.4 Consensus size: 92
695491 GCACCCTCAT
**
695501 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
*
695566 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
695593 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
*
695658 GCTGGCCTTGAATCAGCACATTGGTAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
695685 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT---TCTTTAAGTCCAAT
695750 GTAGCTGGCCTTGAATCAGCACATTGGCAC
63 GTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
695780 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCTTCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
* *
695845 GCTGGCCTTGAATCAGCATATTGGTACCTTC
66 GCTGGCCTTGAATCAGCACATTGG---C-AC
* *
695876 TTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAATCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATG
695941 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
*
695970 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
696035 GCTGGCCTTGAATCAGCACATT-GCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * **
696061 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
696126 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
696153 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTCAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT---TCTTTAAGTCCAAT
696218 GTAGCTGGCCTTGAATCAGCACATTGGCAC
63 GTAGCTGGCCTTGAATCAGCACATTGGCAC
696248 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT---TCTTTAAGTCCAAT
696313 GTAGCTGGCCTTGAATCAGCACATTGGCAC
63 GTAGCTGGCCTTGAATCAGCACATTGGCAC
696343 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT---TCTTTAAGTCCAAT
*
696408 GTAGCTGGCCTTGAATCAGCACATTAGCAC
63 GTAGCTGGCCTTGAATCAGCACATTGGCAC
*
696438 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT---TCTTTAAGTCCAAT
* *
696503 ATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
696537 ATCTTTAAGTCCAATGTAACTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATG
*
696596 TAGCTGGCCTTGAATCAGCATATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* ** * * *
696629 TTCTTTAAGTCCAATGTAGCTGGCCTTGTCTTAGCACATTGGCA-C-----CTTTAAGTCCAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATG
* * *
696688 TAGCTGGCCTTGAATCAGGATATTAGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
696721 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTCCA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT---TCTTTAAGTCCA
* *
696786 ATATAGCTGGCCTTGAATCAGCATATTGGCATC
61 ATGTAGCTGGCCTTGAATCAGCACATTGGCA-C
* *
696819 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCA
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCA
* * *
696878 ATATAGCTGGCCTTGAATCAGTATATTGGCACCTTC
61 ATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
696914 TTCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTTTAAGTCCAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATG
*
696973 TAGCTGGCCTTGAATCAGCATATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* * *
697006 ATCTTTAAGTCCAATATCGCTGGCTTTGACTCAGCATATTGGC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
697049 GCCCTCATCA
Statistics
Matches: 1355, Mismatches: 67, Indels: 68
0.91 0.04 0.05
Matches are distributed among these distances:
91 88 0.06
92 643 0.47
94 1 0.00
95 414 0.31
96 1 0.00
98 87 0.06
99 1 0.00
100 1 0.00
101 119 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:695999 original size:285 final size:279
Alignment explanation
Indices: 695501--697102 Score: 1928
Period size: 285 Copynumber: 5.7 Consensus size: 279
695491 GCACCCTCAT
*
695501 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
*
695566 GCTGGCCTTGACTCAGCACATTGG--CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
66 GCTGGCCTTGAATCAGCACATTGGACCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
* *
695629 TTGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTC
131 TTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTC
695694 CAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGC
196 CAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT-CATCTTTAAGTCCAATGTAGCTGGC
695759 CTTGAATCAGCACATTGGCAC
259 CTTGAATCAGCACATTGGCAC
* *
695780 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCTTCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
* *
695845 GCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCACATTGG-ACC-AC--CTTTAAGTCCAATATAGCTGGCCTTGAATCAG
*
695910 CATATTGGCACCTTCTTCTTTAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTA
127 CATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTA
695975 AGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTTTAAGTCCAATGTAGCTG
192 AGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGTAGCTG
696039 GCCTTGAATCAGCACATT-GCAC
257 GCCTTGAATCAGCACATTGGCAC
* * *
696061 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
696126 GCTGGCCTTGAATCAGCACATTGG--CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
66 GCTGGCCTTGAATCAGCACATTGGACCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
696189 TTGGCACCTT-TTCCATCTTCAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTA
131 TTGGCACCTTCTT-C-T-TT-AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTA
696253 AGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGC
192 AGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT-CATCTTTAAGTCCAATGTAGC
696318 TGGCCTTGAATCAGCACATTGGCAC
255 TGGCCTTGAATCAGCACATTGGCAC
696343 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAAT
* * *
696408 GTAGCTGGCCTTGAATCAGCACATT--AGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
63 ATAGCTGGCCTTGAATCAGCACATTGGACCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGC
* * *
696471 ATATTGGCACCTTTTCCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTT
128 ATATTGGCACC--TT-CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----
* * *
696536 CATCTTTAAGTCCAATGTAACTGGCCTTGAATCAGCACATTGGCA-----C--CTTTAAGTCCAA
186 C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAA
* *
696594 TATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
249 TGTAGCTGGCCTTGAATCAGCACATTGGCA----C
* ** * *
696629 TTCTTTAAGTCCAATGTAGCTGGCCTTGTCTTAGCACATTGGCA----C--CTTTAAGTCCAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATA
* * * * *
696688 TAGCTGGCCTTGAATCAGGATATTAGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
64 TAGCTGGCCTTGAATCAGCACATT-GGA-C--CACCTTTAAGTCCAATATAGCTGGCCTTGAATC
* * * *
696753 AGCATATTGGCACATTTTCCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT
125 AGCATATTGGCAC--CTT-CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-
* *
696818 CTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-----C--CTTTAAGTC
186 C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTC
* * *
696876 CAATATAGCTGGCCTTGAATCAGTATATTGGCACCTTC
246 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
* * *
696914 TTCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATA
* * * * *
696973 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCTTTGACTC
64 TAGCTGGCCTTGAATCAGCACATTGG-A-C--CACCTTTAAGTCCAATATAGCTGGCCTTGAATC
* ** *
697038 AGCATATTGGCGCCCTCATCATT-TTTAAAACCCAATGGT-GTTGGCCTTGAATCAGCACATTGG
125 AGCATATTGGC-ACCT--TC-TTCTTT-AAGTCCAAT-GTAGCTGGCCTTGAATCAGCACATTGG
697101 CA
184 CA
697103 TTCTTTTCAT
Statistics
Matches: 1215, Mismatches: 55, Indels: 99
0.89 0.04 0.07
Matches are distributed among these distances:
274 2 0.00
275 47 0.04
276 1 0.00
277 3 0.00
278 83 0.07
279 122 0.10
281 128 0.11
282 130 0.11
283 1 0.00
284 8 0.01
285 570 0.47
286 37 0.03
287 4 0.00
288 38 0.03
289 2 0.00
291 39 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (279 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
GCTGGCCTTGAATCAGCACATTGGACCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
TTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTC
CAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGTAGCTGGCCT
TGAATCAGCACATTGGCAC
Found at i:697195 original size:53 final size:52
Alignment explanation
Indices: 697077--697196 Score: 143
Period size: 52 Copynumber: 2.3 Consensus size: 52
697067 ACCCAATGGT
* * * *
697077 GTTGGCCTTGAATCAGCACATTGGCATTCTTTTCATCTTCAAGACTAATGTC
1 GTTGGCCGTGAATCAGCACATTGACATTCTTTTCATCTTCAAGACCAATATC
* * * *
697129 GCTGACCGTGAATCAGCACATTGACATTCTTTCTCATCTTTTAA-CCCAATATC
1 GTTGGCCGTGAATCAGCACATTGACATTCTTT-TCATC-TTCAAGACCAATATC
697182 GTTGGCCGTGAATCA
1 GTTGGCCGTGAATCA
697197 ACGTATTGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
52 28 0.50
53 24 0.43
54 4 0.07
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (52 bp):
GTTGGCCGTGAATCAGCACATTGACATTCTTTTCATCTTCAAGACCAATATC
Found at i:697893 original size:19 final size:18
Alignment explanation
Indices: 697868--697935 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 18
697858 AATTCAACGA
697868 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
697886 TGTTGTATTGATAC--AA-
1 T-TTGTATCGATACATAAG
697902 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
697918 TATTGTATCAATACATAA
1 T-TTGTATCGATACATAA
697936 TTAGCTACTG
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
13 10 0.25
15 2 0.05
17 2 0.05
18 1 0.03
19 25 0.62
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:697932 original size:32 final size:32
Alignment explanation
Indices: 697870--697932 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
697860 TTCAACGATT
* **
697870 TGTATCGATACATAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAGTATTGTATCAATACAA
697902 TGTATCGATACATAAGTATTGTATCAATACA
1 TGTATCGATACATAAGTATTGTATCAATACA
697933 TAATTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCAATACAA
Found at i:702946 original size:13 final size:13
Alignment explanation
Indices: 702928--702955 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
702918 ATACAAAGAT
702928 CAATGTATCGATA
1 CAATGTATCGATA
702941 CAATGTATCGATA
1 CAATGTATCGATA
702954 CA
1 CA
702956 TTGAAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:702952 original size:33 final size:33
Alignment explanation
Indices: 702910--702973 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
702900 AACTTCCTAG
**
702910 ATGTATCGATACAAAGATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
**
702943 ATGTATCGATACATTGAAAAATGTATCGATA
1 ATGTATCGATACAAAGAAAAATGTATCGATA
702974 GATTTCCTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:703035 original size:31 final size:32
Alignment explanation
Indices: 703000--703068 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
702990 ACTTTGTAGT
703000 GATACATTGTATCGATA-AAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
*
703031 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
703063 GATACA
1 GATACA
703069 GTTACTGTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 17 0.47
32 19 0.53
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGTATC
Found at i:703043 original size:13 final size:13
Alignment explanation
Indices: 703025--703049 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
703015 TAAAAACTTA
703025 TGTATCGATACAT
1 TGTATCGATACAT
703038 TGTATCGATACA
1 TGTATCGATACA
703050 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:703068 original size:19 final size:18
Alignment explanation
Indices: 703007--703066 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
702997 AGTGATACAT
*
703007 TGTATCGATAAAAACTTA
1 TGTATCGATAAACACTTA
703025 TGTATCGAT--ACA--T-
1 TGTATCGATAAACACTTA
703038 TGTATCGATACAACACTTA
1 TGTATCGATA-AACACTTA
703057 TGTATCGATA
1 TGTATCGATA
703067 CAGTTACTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
13 9 0.26
14 1 0.03
16 5 0.14
18 10 0.29
19 10 0.29
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATAAACACTTA
Found at i:703154 original size:21 final size:21
Alignment explanation
Indices: 703128--703170 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
703118 GTTGTGACCT
703128 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATTCTAGAAA
703149 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATTCTAGAAA
703170 T
1 T
703171 TTATTGGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTAGAAA
Found at i:707794 original size:13 final size:13
Alignment explanation
Indices: 707776--707802 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
707766 ACATTTCTTC
707776 ATGTATCGATACA
1 ATGTATCGATACA
707789 ATGTATCGATACA
1 ATGTATCGATACA
707802 A
1 A
707803 AGCAAGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:709351 original size:21 final size:20
Alignment explanation
Indices: 709326--709385 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
709316 TTTTTATTAG
709326 TTAACTCA-TCATTTTCATTT
1 TTAACTCACTCATTTTC-TTT
*
709346 TGTAACTCACTTATTTTCTTT
1 T-TAACTCACTCATTTTCTTT
*
709367 TTCAACTCATTCATTTTCT
1 TT-AACTCACTCATTTTCT
709386 CCTCTAGTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 2 0.06
21 25 0.74
22 7 0.21
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.55
Consensus pattern (20 bp):
TTAACTCACTCATTTTCTTT
Found at i:710464 original size:20 final size:21
Alignment explanation
Indices: 710439--710479 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
710429 GATACTTTGA
710439 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
710459 ATTATTTTTATGCTTGAAAAA
1 ATTATTTTTA-GCTTGAAAAA
710480 ACATCTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
22 9 0.47
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:712793 original size:50 final size:50
Alignment explanation
Indices: 712717--712901 Score: 210
Period size: 50 Copynumber: 3.7 Consensus size: 50
712707 TTCCATAATT
* * *
712717 TGTATCGATGCATTCTTCATTATATCGATACATTATGGGTTTAACCCAGA
1 TGTATCGATACATTCTTCATTGTATCGATACATTATGGGTTTTACCCAGA
* * *
712767 TGTATCGATACATTATTCATTGTATCGATACATTCTGGGTTTTGCCCAGA
1 TGTATCGATACATTCTTCATTGTATCGATACATTATGGGTTTTACCCAGA
** * * * * *
712817 TAAATTGATATATTCTTCATTCTATCGATATATTATAGGGTTTTACCCAAA
1 TGTATCGATACATTCTTCATTGTATCGATACATTAT-GGGTTTTACCCAGA
* *
712868 TGTATCGATACATT-TCTCAATGTATCAATACATT
1 TGTATCGATACATTCT-TCATTGTATCGATACATT
712902 CAGGCATTTT
Statistics
Matches: 109, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
50 73 0.67
51 36 0.33
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (50 bp):
TGTATCGATACATTCTTCATTGTATCGATACATTATGGGTTTTACCCAGA
Found at i:713248 original size:21 final size:20
Alignment explanation
Indices: 713219--713260 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
713209 AAGGAGAAAA
713219 TCCCATAATGCCT-TTGGCTTG
1 TCCCATAAT-CCTATTGG-TTG
*
713240 TCCCCTAATCCTATTGGTTG
1 TCCCATAATCCTATTGGTTG
713260 T
1 T
713261 GTATGTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.14, C:0.29, G:0.17, T:0.40
Consensus pattern (20 bp):
TCCCATAATCCTATTGGTTG
Found at i:715362 original size:79 final size:78
Alignment explanation
Indices: 715227--715659 Score: 464
Period size: 79 Copynumber: 5.5 Consensus size: 78
715217 CTTTTTTTTA
* * * * * * *
715227 ATTTCCGAGGGGATACTCCAGCCTCGGTTTTATTTTCAAAACACCAATATTCCATAATCGGGGAT
1 ATTTCTGAGGGGATACTCCAACC-CGGTTTTATTTCCAAAACACCAATTTTTCACAATCGAGGAT
*
715292 ACACCAACCCCGTT
65 ACTCCAACCCCGTT
* *
715306 ATTTCTGAGGGGATACTCCAATCCCGGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGGAT
1 ATTTCTGAGGGGATACTCCAA-CCCGGTTTTATTTCCAAAACACCAATTTTTCACAATCGAGGAT
* *
715371 ACTCCAATCCTGTT
65 ACTCCAACCCCGTT
* * * *
715385 ATTT-TCGAGGGTATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCAAGGA
1 ATTTCT-GAGGGGATACTCCAA-CCCGGTTTTATTTCCAAAACACCAATTTTTCACAATCGAGGA
* *
715449 TACTACAACCCGGTT
64 TACTCCAACCCCGTT
* * **
715464 ATTTCTGAGGGGATACTCTAACCCCAGTTTTATTTCCAAAACACTGATTTTTCACAATCG-GGAA
1 ATTTCTGAGGGGATACTCCAA-CCCGGTTTTATTTCCAAAACACCAATTTTTCACAATCGAGG-A
*
715528 TACTCCAACCCCATT
64 TACTCCAACCCCGTT
* * *
715543 ATTT-TCAAGAGGATACTCCAACCTCGGTTTTA--T-CAAAACACCGATTTTTCACAATCGAGGA
1 ATTTCT-GAGGGGATACTCCAACC-CGGTTTTATTTCCAAAACACCAATTTTTCACAATCGAGGA
*
715604 TACTCCAACCCCATT
64 TACTCCAACCCCGTT
* * * *
715619 ATTTCTGAGAGGATACTTCAACCCAGATTTTATCTCCAAAA
1 ATTTCTGAGGGGATACTCCAACCC-GGTTTTATTTCCAAAA
715660 TATTAAACTT
Statistics
Matches: 303, Mismatches: 39, Indels: 24
0.83 0.11 0.07
Matches are distributed among these distances:
75 1 0.00
76 64 0.21
77 4 0.01
78 7 0.02
79 224 0.74
80 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (78 bp):
ATTTCTGAGGGGATACTCCAACCCGGTTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATA
CTCCAACCCCGTT
Found at i:715523 original size:158 final size:156
Alignment explanation
Indices: 715227--715659 Score: 520
Period size: 158 Copynumber: 2.8 Consensus size: 156
715217 CTTTTTTTTA
* * * * * *
715227 ATTTCCGAGGGGATACTCCAGCCTCGGTTTTATTTTCAAAACACCAATATTCCATAATCGGGGAT
1 ATTTTCGA-GGGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGGAT
* *
715292 AC-ACCAACCCCGTTATTTCTGAGGGGATACTCCAATCCCGGTTTTATTTCCAAAACATCAATTT
65 ACTA-CAACCCCGTTATTTCTGAGGGGATACTCTAA-CCCAGTTTTATTTCCAAAACATCAATTT
* * **
715356 TTCATAATCGAGG-ATACTCCAATCCTGTT
128 TTCACAATCG-GGAATACTCCAACCCCATT
* * *
715385 ATTTTCGAGGGTATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCAAGGAT
1 ATTTTCGAGGG-ATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGGAT
* *
715450 ACTACAACCCGGTTATTTCTGAGGGGATACTCTAACCCCAGTTTTATTTCCAAAACA-CTGATTT
65 ACTACAACCCCGTTATTTCTGAGGGGATACTCTAA-CCCAGTTTTATTTCCAAAACATC-AATTT
715514 TTCACAATCGGGAATACTCCAACCCCATT
128 TTCACAATCGGGAATACTCCAACCCCATT
* *
715543 ATTTTCAAGAGGATACTCCAACCTCGGTTTTA---TCAAAACACCGATTTTTCACAATCGAGGAT
1 ATTTTCGAG-GGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGGAT
* * * *
715605 ACTCCAACCCCATTATTTCTGAGAGGATACT-TCAACCCAGATTTTATCTCCAAAA
65 ACTACAACCCCGTTATTTCTGAGGGGATACTCT-AACCCAG-TTTTATTTCCAAAA
715660 TATTAAACTT
Statistics
Matches: 240, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
154 6 0.03
155 70 0.29
157 6 0.03
158 155 0.65
159 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (156 bp):
ATTTTCGAGGGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGGATA
CTACAACCCCGTTATTTCTGAGGGGATACTCTAACCCAGTTTTATTTCCAAAACATCAATTTTTC
ACAATCGGGAATACTCCAACCCCATT
Found at i:718942 original size:33 final size:33
Alignment explanation
Indices: 718900--718962 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
718890 TTACAAGCAA
*
718900 TGTATCGATACAAT-TCATCATGTATCGATATAT
1 TGTATCGATACAATGT-ACCATGTATCGATATAT
718933 TGTATCGATACAATGTACCATGTATCGATA
1 TGTATCGATACAATGTACCATGTATCGATA
718963 CAAACAGTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATATAT
Found at i:719016 original size:20 final size:20
Alignment explanation
Indices: 718991--719029 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
718981 CTACTGCCAG
718991 TTTCATGTATCGATACAATT
1 TTTCATGTATCGATACAATT
719011 TTTCATGTATCGATACAAT
1 TTTCATGTATCGATACAAT
719030 GAACATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (20 bp):
TTTCATGTATCGATACAATT
Found at i:719038 original size:19 final size:20
Alignment explanation
Indices: 718994--719046 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
718984 CTGCCAGTTT
***
718994 CATGTATCGATACAATTTTT
1 CATGTATCGATACAATTGAA
719014 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
719033 CATGTATCGATACA
1 CATGTATCGATACA
719047 TTGTATCGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:719053 original size:13 final size:13
Alignment explanation
Indices: 719035--719059 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
719025 ACAATGAACA
719035 TGTATCGATACAT
1 TGTATCGATACAT
719048 TGTATCGATACA
1 TGTATCGATACA
719060 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:719076 original size:33 final size:32
Alignment explanation
Indices: 719016--719080 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
719006 CAATTTTTCA
*
719016 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
719048 TGTATCGATACAAAGCATA-ATGTATCGATACAT
1 TGTATCGATACAAAG-A-ACATGTATCGATACAT
719081 CTGAGTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:721557 original size:13 final size:13
Alignment explanation
Indices: 721539--721565 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
721529 ATAGTAACCC
721539 ATGTATCGATACA
1 ATGTATCGATACA
721552 ATGTATCGATACA
1 ATGTATCGATACA
721565 A
1 A
721566 GGAATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:724794 original size:21 final size:21
Alignment explanation
Indices: 724761--724800 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
724751 ATACAAGTTC
*
724761 TTATTTTACTTAGCTAATTCA
1 TTATTTTACTTAGCCAATTCA
724782 TTATTTT-CATTAGCCAATT
1 TTATTTTAC-TTAGCCAATT
724801 TTTAAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.53
Consensus pattern (21 bp):
TTATTTTACTTAGCCAATTCA
Found at i:727107 original size:20 final size:20
Alignment explanation
Indices: 727082--727158 Score: 113
Period size: 20 Copynumber: 4.0 Consensus size: 20
727072 CTGCCAGTTT
*
727082 CATGTATCGATAAAATTGTC
1 CATGTATCGATACAATTGTC
727102 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGTC
**
727122 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTC
727141 CATGTATCGATAC-ATTGT
1 CATGTATCGATACAATTGT
727159 ATCGATACAA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
18 1 0.02
19 17 0.33
20 34 0.65
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATTGTC
Found at i:727152 original size:39 final size:39
Alignment explanation
Indices: 727082--727158 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
727072 CTGCCAGTTT
**
727082 CATGTATCGATAAAATTGTCCATGTATCGATACAATTGTC
1 CATGTATCGATAAAATTGAACATGTATCGATAC-ATTGTC
*
727122 CATGTATCGATACAA-TGAACATGTATCGATACATTGT
1 CATGTATCGATAAAATTGAACATGTATCGATACATTGT
727159 ATCGATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 5 0.15
39 15 0.44
40 14 0.41
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (39 bp):
CATGTATCGATAAAATTGAACATGTATCGATACATTGTC
Found at i:727161 original size:13 final size:13
Alignment explanation
Indices: 727143--727167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
727133 ACAATGAACA
727143 TGTATCGATACAT
1 TGTATCGATACAT
727156 TGTATCGATACA
1 TGTATCGATACA
727168 AAGCATGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:727184 original size:33 final size:32
Alignment explanation
Indices: 727124--727188 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
727114 CAATTGTCCA
*
727124 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
**
727156 TGTATCGATACAAAGCATGATGTATCGATACAT
1 TGTATCGATACAAAG-AACATGTATCGATACAT
727189 CTGGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:728521 original size:13 final size:13
Alignment explanation
Indices: 728503--728528 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
728493 ACATTTTGGG
728503 ATGTATCGATACA
1 ATGTATCGATACA
728516 ATGTATCGATACA
1 ATGTATCGATACA
728529 TAATGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:730626 original size:21 final size:21
Alignment explanation
Indices: 730595--730646 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
730585 GCTGCTAGTG
*
730595 TGGGGGCTGCCCGGTTGCGACC
1 TGGGGG-TGCCCGGTCGCGACC
730617 TGGGGGTG-CCGGTCGCGACC
1 TGGGGGTGCCCGGTCGCGACC
730637 TGGTGGGTGC
1 TGG-GGGTGC
730647 TGCCTAGGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 14 0.52
21 7 0.26
22 6 0.22
ACGTcount: A:0.04, C:0.27, G:0.50, T:0.19
Consensus pattern (21 bp):
TGGGGGTGCCCGGTCGCGACC
Found at i:730936 original size:20 final size:20
Alignment explanation
Indices: 730907--730947 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
730897 TGTTTTTGTT
730907 GATGATTTTG-ATGAAAAAC
1 GATGATTTTGAATGAAAAAC
730926 GATGTATTTTGAAATGAAAAAC
1 GATG-ATTTTG-AATGAAAAAC
730948 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
22 9 0.47
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.32
Consensus pattern (20 bp):
GATGATTTTGAATGAAAAAC
Found at i:731097 original size:13 final size:13
Alignment explanation
Indices: 731079--731116 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
731069 ATAAACCCTT
* *
731079 TGTATCAATACAC
1 TGTATCGATACAA
731092 TGTATCGATACAA
1 TGTATCGATACAA
731105 TGTATCGATACA
1 TGTATCGATACA
731117 GAGAATGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:737436 original size:13 final size:13
Alignment explanation
Indices: 737418--737442 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
737408 ACATTTGGTC
737418 ATGTATCGATACA
1 ATGTATCGATACA
737431 ATGTATCGATAC
1 ATGTATCGATAC
737443 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:738754 original size:20 final size:20
Alignment explanation
Indices: 738729--738766 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
738719 TGTTCGGTTC
738729 TAACAAAACTTACGCAATGG
1 TAACAAAACTTACGCAATGG
*
738749 TAACAAGACTTACGCAAT
1 TAACAAAACTTACGCAAT
738767 AGTTGTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.21, G:0.13, T:0.21
Consensus pattern (20 bp):
TAACAAAACTTACGCAATGG
Found at i:742283 original size:3 final size:3
Alignment explanation
Indices: 742275--742353 Score: 95
Period size: 3 Copynumber: 26.3 Consensus size: 3
742265 GCAATGTTTC
* * * * *
742275 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA TCA TCA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
742323 TTG TTA TTA TCA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
742354 AATATAGATG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:751236 original size:16 final size:16
Alignment explanation
Indices: 751217--751249 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
751207 AATCTACCTG
751217 AAGAATAAGATAGGTT
1 AAGAATAAGATAGGTT
751233 AAGAATAAGATAGGTT
1 AAGAATAAGATAGGTT
751249 A
1 A
751250 TTACAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (16 bp):
AAGAATAAGATAGGTT
Found at i:752630 original size:80 final size:79
Alignment explanation
Indices: 752424--752948 Score: 630
Period size: 80 Copynumber: 6.6 Consensus size: 79
752414 AGATAAAAAT
* * *
752424 GGGGTTGGAGTATCCCCGCTGGTGGAAAATCAATGTTTTAGAAATAAAACTGGGGTTTGAGTATC
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATC
* *
752489 CCCTCAAAAATAAT
66 CCCTCAGAAATAAC
* * * * *
752503 AGGGTTGGAGTATCCCTGATAGTGGAAAATC-AGTGTTTTAGAAATAAAATTGGGGCTGGAGTAT
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGA-TGTTTTAGAAATAAAACTGGGGTTGGAGTAT
*
752567 CCCCTTAGAAATAAAC
65 CCCCTCAGAAAT-AAC
* ** * * *
752583 AGGGTTTAAGTATCCCCGATGGTAGAAAATTGATGTTTTAGAAATAAAA-TCGGGGTTAGAGTAT
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACT-GGGGTTGGAGTAT
* *
752647 CCCTTCAAAAATAAC
65 CCCCTCAGAAATAAC
* * * *
752662 -GGGTTGGAGTATCCTCAATGGTAGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAATATC
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATC
*
752726 CCCTCGGAAATAAAC
66 CCCTCAGAAAT-AAC
752741 GGGGTTGGAGTAGT-CCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
1 GGGGTTGGAGTA-TCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
* *
752805 CCCCTTAGAAATAAAT
65 CCCCTCAGAAAT-AAC
* * * *
752821 GGGGTTGGAGTATCCCTGATGGTGAAAAAT-TAGTGTTTTAGAAATAAAA-TCGAGGTTGGAGTA
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGA-TGTTTTAGAAATAAAACT-GGGGTTGGAGTA
*
752884 TCTCCTCAGAAATAAC
64 TCCCCTCAGAAATAAC
* * *
752900 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGGTATTTTAGAAATAAAA
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAA
752949 ACATCAATGA
Statistics
Matches: 385, Mismatches: 49, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
78 64 0.17
79 122 0.32
80 197 0.51
81 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATC
CCCTCAGAAATAAC
Found at i:752830 original size:29 final size:31
Alignment explanation
Indices: 752778--752836 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 31
752768 AATCGATGTT
752778 TTAGAAATAAAACTGGGGTTGGAGTATCCCC
1 TTAGAAATAAAACTGGGGTTGGAGTATCCCC
752809 TTAGAAAT-AAA-TGGGGTTGGAGTATCCC
1 TTAGAAATAAAACTGGGGTTGGAGTATCCC
752837 TGATGGTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 17 0.61
30 3 0.11
31 8 0.29
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (31 bp):
TTAGAAATAAAACTGGGGTTGGAGTATCCCC
Found at i:752860 original size:238 final size:237
Alignment explanation
Indices: 752424--752948 Score: 722
Period size: 238 Copynumber: 2.2 Consensus size: 237
752414 AGATAAAAAT
* * * *
752424 GGGGTTGGAGTATCCCCGCTGGTGGAAAATCAATGTTTTAGAAATAAAACTGGGGTTTGAGTATC
1 GGGGTTGGAGTATCCCCGATGGT-GAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAATATC
*
752489 CCCTCAAAAATAATAGGGTTGGAGTATCCCTGATAGTGGAAAATCAGTGTTTTAGAAATAAAATT
65 CCCTCAAAAATAATAGGGTTGGAGTATCCCTGATAGTGGAAAATCAGTGTTTTAGAAATAAAACT
*
752554 GGGGCTGGAGTATCCCCTTAGAAATAAACAGGGTTTAAGTATCCCCGATGGTAGAAAATTGATGT
130 GGGGCTGGAGTATCCCCTTAGAAATAAACAGGGTTGAAGTATCCCCGATGGTAGAAAATTGATGT
*
752619 TTTAGAAATAAAATCGGGGTTAGAGTATC-CCTTCAAAAATAAC
195 TTTAGAAATAAAATCGAGGTTAGAGTATCTCC-TCAAAAATAAC
* *
752662 -GGGTTGGAGTATCCTCAATGGTAGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAATATC
1 GGGGTTGGAGTATCCCCGATGGT-GAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAATATC
** *
752726 CCCTCGGAAATAA-ACGGGGTTGGAGTAGTCCC-GATGGTGGAAAATC-GATGTTTTAGAAATAA
65 CCCTCAAAAATAATA--GGGTTGGAGTA-TCCCTGATAGTGGAAAATCAG-TGTTTTAGAAATAA
* ** * *
752788 AACTGGGGTTGGAGTATCCCCTTAGAAATAAATGGGGTTGGAGTATCCCTGATGGT-GAAAAATT
126 AACTGGGGCTGGAGTATCCCCTTAGAAATAAACAGGGTTGAAGTATCCCCGATGGTAG-AAAATT
* *
752852 -AGTGTTTTAGAAATAAAATCGAGGTTGGAGTATCTCCTCAGAAATAAC
190 GA-TGTTTTAGAAATAAAATCGAGGTTAGAGTATCTCCTCAAAAATAAC
* *
752900 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGGTATTTTAGAAATAAAA
1 GGGGTTGGAGTATCCCCGATGGTG-AAAATCGATGTTTTAGAAATAAAA
752949 ACATCAATGA
Statistics
Matches: 254, Mismatches: 24, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
236 1 0.00
237 71 0.28
238 134 0.53
239 48 0.19
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (237 bp):
GGGGTTGGAGTATCCCCGATGGTGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAATATCC
CCTCAAAAATAATAGGGTTGGAGTATCCCTGATAGTGGAAAATCAGTGTTTTAGAAATAAAACTG
GGGCTGGAGTATCCCCTTAGAAATAAACAGGGTTGAAGTATCCCCGATGGTAGAAAATTGATGTT
TTAGAAATAAAATCGAGGTTAGAGTATCTCCTCAAAAATAAC
Found at i:754543 original size:13 final size:13
Alignment explanation
Indices: 754525--754564 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
754515 ACATCTTGCT
754525 TTGTATCGATACA
1 TTGTATCGATACA
*
754538 TTGTATGGATACA
1 TTGTATCGATACA
754551 TTGTATCGATACA
1 TTGTATCGATACA
754564 T
1 T
754565 GTTCATTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:754594 original size:20 final size:19
Alignment explanation
Indices: 754548--754604 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
754538 TTGTATGGAT
*
754548 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
754567 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
754586 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
754605 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:754930 original size:11 final size:11
Alignment explanation
Indices: 754914--754938 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
754904 CATCAAGAAC
754914 AGAACCAACCA
1 AGAACCAACCA
754925 AGAACCAACCA
1 AGAACCAACCA
754936 AGA
1 AGA
754939 TACATGGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.32, G:0.12, T:0.00
Consensus pattern (11 bp):
AGAACCAACCA
Found at i:755238 original size:360 final size:360
Alignment explanation
Indices: 754577--755271 Score: 1390
Period size: 360 Copynumber: 1.9 Consensus size: 360
754567 TCATTGTATC
754577 GATACATGGACAATTGTATCGATACATGAAACTGGCAGTAGCTACCCTATCACTATTTATATCGA
1 GATACATGGACAATTGTATCGATACATGAAACTGGCAGTAGCTACCCTATCACTATTTATATCGA
754642 TACATGGTATAGTGTATCGATACATGAAGAAATCTATCGATACATAGCTTGTGACGGCTATAAAC
66 TACATGGTATAGTGTATCGATACATGAAGAAATCTATCGATACATAGCTTGTGACGGCTATAAAC
754707 GGTTATAATTTCAAATCAATGTATTGATACATTATGAATTGTATCGATACATGGCTATGGGAAAG
131 GGTTATAATTTCAAATCAATGTATTGATACATTATGAATTGTATCGATACATGGCTATGGGAAAG
754772 CATGAAAACAAGCACCAAACAAGCTTATAACGGCTAGAAACACAATCATTCAACCTCCAACGGAT
196 CATGAAAACAAGCACCAAACAAGCTTATAACGGCTAGAAACACAATCATTCAACCTCCAACGGAT
754837 ACATCAGCATTCAAGCCTATAAATATGAGTTTCCAGCAGCTGAACAAGAACAGAACCAACCAAGA
261 ACATCAGCATTCAAGCCTATAAATATGAGTTTCCAGCAGCTGAACAAGAACAGAACCAACCAAGA
754902 AACATCAAGAACAGAACCAACCAAGAACCAACCAA
326 AACATCAAGAACAGAACCAACCAAGAACCAACCAA
754937 GATACATGGACAATTGTATCGATACATGAAACTGGCAGTAGCTACCCTATCACTATTTATATCGA
1 GATACATGGACAATTGTATCGATACATGAAACTGGCAGTAGCTACCCTATCACTATTTATATCGA
755002 TACATGGTATAGTGTATCGATACATGAAGAAATCTATCGATACATAGCTTGTGACGGCTATAAAC
66 TACATGGTATAGTGTATCGATACATGAAGAAATCTATCGATACATAGCTTGTGACGGCTATAAAC
755067 GGTTATAATTTCAAATCAATGTATTGATACATTATGAATTGTATCGATACATGGCTATGGGAAAG
131 GGTTATAATTTCAAATCAATGTATTGATACATTATGAATTGTATCGATACATGGCTATGGGAAAG
755132 CATGAAAACAAGCACCAAACAAGCTTATAACGGCTAGAAACACAATCATTCAACCTCCAACGGAT
196 CATGAAAACAAGCACCAAACAAGCTTATAACGGCTAGAAACACAATCATTCAACCTCCAACGGAT
755197 ACATCAGCATTCAAGCCTATAAATATGAGTTTCCAGCAGCTGAACAAGAACAGAACCAACCAAGA
261 ACATCAGCATTCAAGCCTATAAATATGAGTTTCCAGCAGCTGAACAAGAACAGAACCAACCAAGA
755262 AACATCAAGA
326 AACATCAAGA
755272 GATCAAAGCT
Statistics
Matches: 335, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
360 335 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (360 bp):
GATACATGGACAATTGTATCGATACATGAAACTGGCAGTAGCTACCCTATCACTATTTATATCGA
TACATGGTATAGTGTATCGATACATGAAGAAATCTATCGATACATAGCTTGTGACGGCTATAAAC
GGTTATAATTTCAAATCAATGTATTGATACATTATGAATTGTATCGATACATGGCTATGGGAAAG
CATGAAAACAAGCACCAAACAAGCTTATAACGGCTAGAAACACAATCATTCAACCTCCAACGGAT
ACATCAGCATTCAAGCCTATAAATATGAGTTTCCAGCAGCTGAACAAGAACAGAACCAACCAAGA
AACATCAAGAACAGAACCAACCAAGAACCAACCAA
Found at i:763879 original size:3 final size:3
Alignment explanation
Indices: 763871--763908 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
763861 CGAGTCAACT
* *
763871 TCA TCA TCA TCA TCA TCA TTA TCA TCA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
763909 CTTGACGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:765511 original size:13 final size:13
Alignment explanation
Indices: 765493--765517 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
765483 TTGGGCATAA
765493 TGTATCGATACAT
1 TGTATCGATACAT
765506 TGTATCGATACA
1 TGTATCGATACA
765518 ATGTCCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:765597 original size:20 final size:19
Alignment explanation
Indices: 765567--765621 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
765557 CTGCCAATTT
* *
765567 CATGCATCGATACAACTGAG
1 CATGTATCGATACAA-TGAA
* *
765587 TATGTATCGATATAATGAA
1 CATGTATCGATACAATGAA
765606 CATGTATCGATACAAT
1 CATGTATCGATACAAT
765622 ATACAAAGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:770798 original size:17 final size:18
Alignment explanation
Indices: 770768--770801 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
770758 CACAAAATAA
770768 TAAAAATATATTTAATTT
1 TAAAAATATATTTAATTT
*
770786 TAAAATTAT-TTTAATT
1 TAAAAATATATTTAATT
770802 ACTATTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAAAAATATATTTAATTT
Found at i:770915 original size:26 final size:26
Alignment explanation
Indices: 770886--770937 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
770876 ATTAATTGAA
* *
770886 AAATAAATT-TATTTTTTATTTAAAAT
1 AAATAAATTAAATTATTT-TTTAAAAT
*
770912 AAATTAATTAAATTATTTTTTAAAAT
1 AAATAAATTAAATTATTTTTTAAAAT
770938 TTAATAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
AAATAAATTAAATTATTTTTTAAAAT
Found at i:770984 original size:7 final size:7
Alignment explanation
Indices: 770957--770991 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
770947 AAAAATTAAT
770957 TAAAATA
1 TAAAATA
770964 -AAAATA
1 TAAAATA
770970 TCAAAATA
1 T-AAAATA
770978 TAAAATA
1 TAAAATA
770985 TAAAATA
1 TAAAATA
770992 GTTAATATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 6 0.23
7 13 0.50
8 7 0.27
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAAATA
Found at i:772214 original size:26 final size:26
Alignment explanation
Indices: 772167--772220 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
772157 TTTTAACGAT
*
772167 AATTTTTTAAAGAAGAAATTTTATGA
1 AATTTTTTAAAGAAGAAATTTTAGGA
* *
772193 AATTTTTT-GAGAGGAAATTTTTAGGA
1 AATTTTTTAAAGAAGAAA-TTTTAGGA
772219 AA
1 AA
772221 AAATTTTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.41
Consensus pattern (26 bp):
AATTTTTTAAAGAAGAAATTTTAGGA
Found at i:773865 original size:41 final size:41
Alignment explanation
Indices: 773802--773884 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
773792 AGTGTAGAAG
* *
773802 GAGATTGCAAAGAAAAGACCAAAAGACGAGGATTGCATCAT
1 GAGATTGCAAACAAAAGACCAAAAGACGAGGATCGCATCAT
* * * *
773843 GAGATTGTAAACAAAGGGCCAAAAGATGAGGATCGCATCAT
1 GAGATTGCAAACAAAAGACCAAAAGACGAGGATCGCATCAT
773884 G
1 G
773885 CGAGTCTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (41 bp):
GAGATTGCAAACAAAAGACCAAAAGACGAGGATCGCATCAT
Found at i:773996 original size:3 final size:3
Alignment explanation
Indices: 773988--774026 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
773978 ATTAATCCTC
773988 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
774027 GTTTCTCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:779535 original size:78 final size:78
Alignment explanation
Indices: 779453--779633 Score: 181
Period size: 78 Copynumber: 2.3 Consensus size: 78
779443 TATAAATTTA
* *
779453 ATATTTTAGAAGTAAAAACAGGGTTAGAATA-TCCCTTCG-GAATGATAGGGTTGAAGTAACCCT
1 ATATTTTAGAA-TAAAAACAAGGTTAGAATATTCCC-TCGAAAATGATAGGGTTGAAGT-ACCCT
*
779516 -AATAGTGAAAAATCG
63 CAATAGTGAAAAATAG
* * * * * *
779531 ATATTTTAGAA-AAAAATTAAGGTTGGAGTATTCCCTCGAAAATTATAGGGTTGGAGTATCCTCA
1 ATATTTTAGAATAAAAA-CAAGGTTAGAATATTCCCTCGAAAATGATAGGGTTGAAGTACCCTCA
*
779595 ATGGTGAAAAATAG
65 ATAGTGAAAAATAG
* *
779609 ATATTTTGGAAATAAAAACGAGGTT
1 ATATTTTAG-AATAAAAACAAGGTT
779634 GGAGTATCCT
Statistics
Matches: 84, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
76 5 0.06
77 16 0.19
78 51 0.61
79 7 0.08
80 5 0.06
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (78 bp):
ATATTTTAGAATAAAAACAAGGTTAGAATATTCCCTCGAAAATGATAGGGTTGAAGTACCCTCAA
TAGTGAAAAATAG
Found at i:779664 original size:51 final size:51
Alignment explanation
Indices: 779579--779692 Score: 144
Period size: 51 Copynumber: 2.2 Consensus size: 51
779569 AAAATTATAG
*
779579 GGTTGGAGTATCCTCAATGGTGAAAAATAGATATTTTGGAAATAAAAACGA
1 GGTTGGAGTATCCTCAATGATGAAAAATAGATATTTTGGAAATAAAAACGA
* * *
779630 GGTTGGAGTATCCTCGA-GATGAAAAATTTA-ATATTTTGGAAGTAAAAACGG
1 GGTTGGAGTATCCTCAATGATGAAAAA--TAGATATTTTGGAAATAAAAACGA
779681 GGCTT-GAGTATC
1 GG-TTGGAGTATC
779693 TCTTGGGAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
50 8 0.14
51 44 0.79
52 4 0.07
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCTCAATGATGAAAAATAGATATTTTGGAAATAAAAACGA
Found at i:779769 original size:79 final size:78
Alignment explanation
Indices: 779630--779801 Score: 177
Period size: 79 Copynumber: 2.2 Consensus size: 78
779620 ATAAAAACGA
* * * *
779630 GGTTGGAGTATCCTCGAGATGAAAAATTTAATATTTTGGAAGTAAAAACGGGGCTTGAGTATCTC
1 GGTTGGAGTATCC-CGAGATGAAAAATTGAATATTTTGAAAATAAAAACAGGGCTTGAGTATCTC
* **
779695 TTGGGAAATGATGG
65 CTCAGAAATGATGG
* * *
779709 GGTTGGAGTATCCCGATGGTTAAAAATTG-ATATTTTTGAAAATAAAAATAGGG-TTAGAGTATC
1 GGTTGGAGTATCCCGA-GATGAAAAATTGAATA-TTTTGAAAATAAAAACAGGGCTT-GAGTATC
** *
779772 TCCTCAGTGATGGTGG
63 TCCTCAGAAATGATGG
779788 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
779802 TTTAGTGATG
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
78 8 0.10
79 69 0.90
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.31
Consensus pattern (78 bp):
GGTTGGAGTATCCCGAGATGAAAAATTGAATATTTTGAAAATAAAAACAGGGCTTGAGTATCTCC
TCAGAAATGATGG
Found at i:779799 original size:28 final size:28
Alignment explanation
Indices: 779759--779830 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
779749 AATAAAAATA
779759 GGGTTAGAGTATCTCC-TCAGTGATGGTG
1 GGGTTAGAGTATC-CCTTCAGTGATGGTG
* *
779787 GGGTTGGAGTATCCCTTTAGTGATGGTG
1 GGGTTAGAGTATCCCTTCAGTGATGGTG
779815 GGGTTAGAGTATCCCT
1 GGGTTAGAGTATCCCT
779831 AAGATGAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 2 0.05
28 38 0.95
ACGTcount: A:0.17, C:0.14, G:0.36, T:0.33
Consensus pattern (28 bp):
GGGTTAGAGTATCCCTTCAGTGATGGTG
Found at i:782262 original size:51 final size:51
Alignment explanation
Indices: 782200--782337 Score: 188
Period size: 51 Copynumber: 2.7 Consensus size: 51
782190 CATAGTCTAC
* * *
782200 ATGTATCGATACATTAAAGAATGTATCGATACATTTGGGTC-AAAACCCAAA
1 ATGTATCGATACAATAAA-AATGTATCAATAAATTTGGGTCAAAAACCCAAA
* * *
782251 ATGTATCGATACAATGAATAATGTATCAATATATTTGGGTCAAAAACCCAGA
1 ATGTATCGATACAAT-AAAAATGTATCAATAAATTTGGGTCAAAAACCCAAA
*
782303 ATGTATCGATACAATAGAAATGTATCAATAAATTT
1 ATGTATCGATACAATAAAAATGTATCAATAAATTT
782338 TCCTTCCAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 51 0.66
52 26 0.34
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (51 bp):
ATGTATCGATACAATAAAAATGTATCAATAAATTTGGGTCAAAAACCCAAA
Found at i:782416 original size:20 final size:20
Alignment explanation
Indices: 782393--782444 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
782383 ATATTTATAT
*
782393 ATGTATTGATACATTCACTC
1 ATGTATCGATACATTCACTC
* *
782413 ATGTATCGATACGTTCACTTT
1 ATGTATCGATACATTCAC-TC
782434 ATGTATCGATA
1 ATGTATCGATA
782445 AAAATTGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCACTC
Found at i:784037 original size:45 final size:46
Alignment explanation
Indices: 783986--784079 Score: 145
Period size: 49 Copynumber: 2.0 Consensus size: 46
783976 ATTATGACTT
*
783986 GTTGTCATTTTGAAC-TTATTAACTTTTAATAAGTCATATAAACTC
1 GTTGTCACTTTGAACTTTATTAACTTTTAATAAGTCATATAAACTC
784031 GTTGTCACTTTGAACTTGATTATTAACTTTTAATAAGTCATATAAACTC
1 GTTGTCACTTTGAAC-T--TTATTAACTTTTAATAAGTCATATAAACTC
784080 CCACTAAATC
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
45 14 0.32
49 30 0.68
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.44
Consensus pattern (46 bp):
GTTGTCACTTTGAACTTTATTAACTTTTAATAAGTCATATAAACTC
Found at i:790693 original size:2 final size:2
Alignment explanation
Indices: 790686--790716 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
790676 TCAAAAATAC
790686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
790717 CAAGATGCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:792249 original size:2 final size:2
Alignment explanation
Indices: 792242--792269 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
792232 CGTTTTCTTG
792242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
792270 GAGAGAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:794691 original size:2 final size:2
Alignment explanation
Indices: 794686--794723 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
794676 AAAAACATTG
794686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
794724 TGAAATCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:796152 original size:15 final size:15
Alignment explanation
Indices: 796123--796166 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
796113 AGTGAATCAT
796123 ATTAATTTCAAATTAA
1 ATTAATTT-AAATTAA
796139 ATTAATTTAAATTAA
1 ATTAATTTAAATTAA
*
796154 ATTATTTTAAATT
1 ATTAATTTAAATT
796167 TTTAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 19 0.70
16 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTAATTTAAATTAA
Found at i:796213 original size:32 final size:31
Alignment explanation
Indices: 796172--796250 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
796162 AAATTTTTAA
*
796172 AATTTTAAATTATTTAAAAATTCAATCATTTT
1 AATTTTAAATTATTT-AAAATTAAATCATTTT
* *
796204 AATTTTAAATCACTTTAAATTTAAATCATTTT
1 AATTTTAAATTA-TTTAAAATTAAATCATTTT
* *
796236 GATTTCAAATTATTT
1 AATTTTAAATTATTT
796251 CATATTTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 3 0.08
32 34 0.85
33 3 0.08
ACGTcount: A:0.41, C:0.08, G:0.01, T:0.51
Consensus pattern (31 bp):
AATTTTAAATTATTTAAAATTAAATCATTTT
Found at i:796214 original size:16 final size:16
Alignment explanation
Indices: 796172--796250 Score: 68
Period size: 16 Copynumber: 4.9 Consensus size: 16
796162 AAATTTTTAA
* *
796172 AATTTTAAATTATTTA
1 AATTTTAAATCATTTT
** *
796188 AAAATTCAATCATTTT
1 AATTTTAAATCATTTT
*
796204 AATTTTAAATCACTTT
1 AATTTTAAATCATTTT
*
796220 AAATTTAAATCATTTT
1 AATTTTAAATCATTTT
* * *
796236 GATTTCAAATTATTT
1 AATTTTAAATCATTT
796251 CATATTTAAA
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.41, C:0.08, G:0.01, T:0.51
Consensus pattern (16 bp):
AATTTTAAATCATTTT
Found at i:796224 original size:17 final size:16
Alignment explanation
Indices: 796157--796234 Score: 70
Period size: 16 Copynumber: 4.9 Consensus size: 16
796147 AAATTAAATT
*
796157 ATTTTAAAT-TTTTAAA
1 ATTTTAAATCATTT-AA
*
796173 ATTTTAAATTATTTAA
1 ATTTTAAATCATTTAA
** * *
796189 AAATTCAATCATTTTA
1 ATTTTAAATCATTTAA
796205 ATTTTAAATCACTTTAA
1 ATTTTAAATCA-TTTAA
796222 A-TTTAAATCATTT
1 ATTTTAAATCATTT
796235 TGATTTCAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
15 3 0.06
16 39 0.78
17 8 0.16
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTTAAATCATTTAA
Found at i:796258 original size:32 final size:32
Alignment explanation
Indices: 796195--796275 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
796185 TTAAAAATTC
*
796195 AATCATTTTAATTTTAAATCACTTTAAATTTA
1 AATCATTTTAATTTCAAATCACTTTAAATTTA
* * *
796227 AATCATTTTGATTTCAAATTA-TTTCATATTTA
1 AATCATTTTAATTTCAAATCACTTT-AAATTTA
*
796259 AAT-ATATTTATTTTCAA
1 AATCAT-TTTAATTTCAA
796276 TCTATCAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 5 0.12
32 36 0.88
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (32 bp):
AATCATTTTAATTTCAAATCACTTTAAATTTA
Found at i:796393 original size:15 final size:15
Alignment explanation
Indices: 796353--796394 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
796343 ATCAATTAAG
796353 ATTAATATTTAAATTA
1 ATTAA-ATTTAAATTA
796369 A-TAAATTTTAAATTA
1 ATTAAA-TTTAAATTA
796384 ATTAAATTTAA
1 ATTAAATTTAA
796395 TATTTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.04
15 18 0.75
16 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAAATTTAAATTA
Found at i:796417 original size:30 final size:31
Alignment explanation
Indices: 796353--796417 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
796343 ATCAATTAAG
*
796353 ATTAATATTTAAATTAATAAATTTTAAATTA
1 ATTAATATTTAAATTAATAAATTTTAAATAA
*
796384 ATTAA-ATTTAATATTTAA-AATTTTTAAA-AA
1 ATTAATATTTAA-A-TTAATAAATTTTAAATAA
796414 ATTA
1 ATTA
796418 TTTTCAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
30 11 0.37
31 15 0.50
32 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
ATTAATATTTAAATTAATAAATTTTAAATAA
Found at i:796499 original size:16 final size:16
Alignment explanation
Indices: 796464--796524 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
796454 ATAAATTCAT
*
796464 ATTTAAAATT-TTTTGA
1 ATTT-AAATTATTTTTA
796480 ATTTAAATTATTTCTT-
1 ATTTAAATTATTT-TTA
*
796496 ATTTAAATCATTTTTA
1 ATTTAAATTATTTTTA
796512 AGTTTAAATTATT
1 A-TTTAAATTATT
796525 AATTTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 7 0.18
16 20 0.53
17 11 0.29
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (16 bp):
ATTTAAATTATTTTTA
Found at i:797549 original size:2 final size:2
Alignment explanation
Indices: 797544--797575 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
797534 AAAAAAATTT
797544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
797576 AACTACAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:804908 original size:41 final size:41
Alignment explanation
Indices: 804820--804900 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
804810 TGTTTTAAGA
* * *
804820 AATCAAATGATATTATTGGTACAGATTGTTAGAGAACCACC
1 AATCAAATGATATTATCGGTACAGATCGTTAGAAAACCACC
*
804861 AATCAAATGATATTATCGGTACAGATCGTTGGAAAACCAC
1 AATCAAATGATATTATCGGTACAGATCGTTAGAAAACCAC
804901 ACCTCAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (41 bp):
AATCAAATGATATTATCGGTACAGATCGTTAGAAAACCACC
Found at i:806184 original size:13 final size:13
Alignment explanation
Indices: 806127--806185 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
806117 ATCTTTGTAG
806127 ATTTTAATA-TAT
1 ATTTTAATATTAT
*
806139 -TTTTAAAATATAT
1 ATTTTAATAT-TAT
*
806152 AATTTTAAT-TTAA
1 -ATTTTAATATTAT
806165 ATTTTAATATTAT
1 ATTTTAATATTAT
*
806178 TTTTTAAT
1 ATTTTAAT
806186 GTAAAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
11 7 0.19
12 8 0.22
13 15 0.41
14 1 0.03
15 6 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTAATATTAT
Found at i:806814 original size:24 final size:22
Alignment explanation
Indices: 806767--806826 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 22
806757 TATTTGTTTA
806767 TAAAATTT-TATATATTAAATAT
1 TAAAATTTATAT-TATTAAATAT
806789 T-AAATTATATATTATATAAATAAT
1 TAAAATT-TATATTAT-TAAAT-AT
806813 TAAAATTTATATTA
1 TAAAATTTATATTA
806827 ACATTTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
21 5 0.15
22 5 0.15
23 8 0.24
24 10 0.30
25 5 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAAATTTATATTATTAAATAT
Found at i:806822 original size:19 final size:19
Alignment explanation
Indices: 806800--806838 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
806790 AAATTATATA
*
806800 TTATATAAATAATTAAAAT
1 TTATATAAACAATTAAAAT
* *
806819 TTATATTAACATTTAAAAT
1 TTATATAAACAATTAAAAT
806838 T
1 T
806839 AAATTGATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TTATATAAACAATTAAAAT
Found at i:806822 original size:26 final size:23
Alignment explanation
Indices: 806767--806824 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 23
806757 TATTTGTTTA
806767 TAAAATTT-TATATATTAAATAT
1 TAAAATTTATATATATTAAATAT
806789 T-AAA-TTATATATTATATAAATAAT
1 TAAAATTTATATA-TAT-TAAAT-AT
806813 TAAAATTTATAT
1 TAAAATTTATAT
806825 TAACATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.07
21 7 0.23
22 4 0.13
23 5 0.17
24 3 0.10
25 3 0.10
26 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAAATTTATATATATTAAATAT
Found at i:814205 original size:17 final size:17
Alignment explanation
Indices: 814178--814226 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
814168 AATAATTTTT
*
814178 TATATTATTTATTTAGGA
1 TATA-TATTTATTTAGAA
814196 TATATATTTAATTT-GAA
1 TATATATTT-ATTTAGAA
*
814213 TAAATATTTATTTA
1 TATATATTTATTTA
814227 AGACAATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 4 0.15
17 15 0.56
18 8 0.30
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TATATATTTATTTAGAA
Found at i:814415 original size:33 final size:33
Alignment explanation
Indices: 814317--814415 Score: 80
Period size: 33 Copynumber: 3.0 Consensus size: 33
814307 ATGACTAGGT
*
814317 TATTTATATAATTAATTTAATATCTAA-AT-AA
1 TATTTATAGAATTAATTTAATATCTAATATAAA
* * * *
814348 TCTTGTTTAGATATTTATTTATAAAT-TAAATATAAA
1 TATT-TATAGA-ATTAATTTA-ATATCT-AATATAAA
814384 TATTTATA-AATTAATTTAATATCTAACTATAA
1 TATTTATAGAATTAATTTAATATCTAA-TATAA
814416 GAAAACTATC
Statistics
Matches: 51, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
31 3 0.06
32 9 0.18
33 23 0.45
34 6 0.12
35 5 0.10
36 5 0.10
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.48
Consensus pattern (33 bp):
TATTTATAGAATTAATTTAATATCTAATATAAA
Found at i:814587 original size:26 final size:26
Alignment explanation
Indices: 814558--814611 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
814548 CTAGTACATA
814558 AACTATTTACATAATTTGAATTTTTT
1 AACTATTTACATAATTTGAATTTTTT
814584 AACTATTTACATAATTTGAATTTTTT
1 AACTATTTACATAATTTGAATTTTTT
814610 AA
1 AA
814612 ACTTCAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (26 bp):
AACTATTTACATAATTTGAATTTTTT
Found at i:815132 original size:28 final size:28
Alignment explanation
Indices: 815101--815203 Score: 115
Period size: 27 Copynumber: 3.7 Consensus size: 28
815091 ATATAATTAC
815101 ATAAAATAAATATATATATAATATAAAA
1 ATAAAATAAATATATATATAATATAAAA
*
815129 AT-AATTAAA-ATATAATATAATATAAAA
1 ATAAAATAAATATAT-ATATAATATAAAA
* *
815156 A-AAATATAAATATATAAAT-ATATTAAA
1 ATAAA-ATAAATATATATATAATATAAAA
*
815183 ATCAACATAAATATATATATA
1 AT-AAAATAAATATATATATA
815204 TAGATAGAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
26 4 0.06
27 30 0.48
28 22 0.35
29 6 0.10
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAAAATAAATATATATATAATATAAAA
Found at i:815133 original size:52 final size:52
Alignment explanation
Indices: 815076--815177 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
815066 AAAAAAAATT
* * * *
815076 AATAATTTAAATATTATATAAT-TACATAAAATA-AATATATATATAATATAAA
1 AATAATTAAAATATAATATAATATAAAAAAAATATAA-ATATATA-AATATAAA
815128 AATAATTAAAATATAATATAATATAAAAAAAATATAAATATATAAATATA
1 AATAATTAAAATATAATATAATATAAAAAAAATATAAATATATAAATATA
815178 TTAAAATCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
52 26 0.59
53 16 0.36
54 2 0.05
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (52 bp):
AATAATTAAAATATAATATAATATAAAAAAAATATAAATATATAAATATAAA
Found at i:815170 original size:19 final size:21
Alignment explanation
Indices: 815116--815173 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
815106 ATAAATATAT
* **
815116 ATATAATATAAAAATAATTAAA
1 ATATAATAT-AATATAAAAAAA
815138 ATATAATATAATATAAAAAAA
1 ATATAATATAATATAAAAAAA
815159 ATATAA-AT-ATATAAA
1 ATATAATATAATATAAA
815174 TATATTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.21
20 2 0.06
21 15 0.45
22 9 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
ATATAATATAATATAAAAAAA
Found at i:815204 original size:28 final size:26
Alignment explanation
Indices: 815083--815205 Score: 101
Period size: 27 Copynumber: 4.6 Consensus size: 26
815073 ATTAATAATT
*
815083 TAAATAT-TATATA-ATT-ACATAAAA
1 TAAATATATATATATATTAAAAT-AAA
* *
815107 TAAATATATATATAATATAAAAATAAT
1 TAAATATATATAT-ATATTAAAATAAA
* *
815134 TAAA-ATATAATATAATATAAAAAAAATA
1 TAAATATAT-ATAT-ATATTAAAATAA-A
*
815162 TAAATATATAAATATATTAAAATCAACA
1 TAAATATATATATATATTAAAAT-AA-A
815190 TAAATATATATATATA
1 TAAATATATATATATA
815206 GATAGAGACA
Statistics
Matches: 81, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
24 7 0.09
25 5 0.06
26 5 0.06
27 32 0.40
28 28 0.35
29 4 0.05
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAATATATATATATATTAAAATAAA
Found at i:818679 original size:21 final size:20
Alignment explanation
Indices: 818662--818707 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
818652 TACTTAAAGT
818662 TATAATAAATAAAATTAATTA
1 TATAA-AAATAAAATTAATTA
*
818683 TATAAAAATAAAAATAATTA
1 TATAAAAATAAAATTAATTA
818703 TATAA
1 TATAA
818708 TGAAATTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
TATAAAAATAAAATTAATTA
Found at i:818988 original size:21 final size:21
Alignment explanation
Indices: 818950--819015 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
818940 TAAACATATA
*
818950 TATTATTATTAAT-TTTAATTT
1 TATTATTA-TAATAATTAATTT
*
818971 TATTATTATAATAATTAATCT
1 TATTATTATAATAATTAATTT
* * *
818992 TACTACTACAATAATTAATTT
1 TATTATTATAATAATTAATTT
819013 TAT
1 TAT
819016 CATCACTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTATTATAATAATTAATTT
Found at i:822817 original size:19 final size:20
Alignment explanation
Indices: 822774--822824 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
822764 TACAAGCCAA
**
822774 TGTATCGATACATTTTATGG
1 TGTATCGATACATACTATGG
*
822794 TGTATCGATACATACTGT-G
1 TGTATCGATACATACTATGG
822813 TGTATCGATACA
1 TGTATCGATACA
822825 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATACTATGG
Found at i:822999 original size:195 final size:195
Alignment explanation
Indices: 822794--823194 Score: 784
Period size: 195 Copynumber: 2.1 Consensus size: 195
822784 CATTTTATGG
*
822794 TGTATCGATACATACTGTGTGTATCGATACAAGTTTGGCTACTGCCAAGCAATGCCAATGACTTG
1 TGTATCGATACATACTGTGTGTATCAATACAAGTTTGGCTACTGCCAAGCAATGCCAATGACTTG
822859 TATCGATACATCTTTTTCATGTATCGATACAATGCAACATGTATCGATACTTTTAAATGTGTATC
66 TATCGATACATCTTTTTCATGTATCGATACAATGCAACATGTATCGATACTTTTAAATGTGTATC
*
822924 GATACTTTTCAGGGTTTTGACTTTTTTAGCCTAAGTCAACCTTAATGTATCGATACAAATACCTA
131 GATACTTTTCAGGGTTTTGACCTTTTTAGCCTAAGTCAACCTTAATGTATCGATACAAATACCTA
822989 TGTATCGATACATACTGTGTGTATCAATACAAGTTTGGCTACTGCCAAGCAATGCCAATGACTTG
1 TGTATCGATACATACTGTGTGTATCAATACAAGTTTGGCTACTGCCAAGCAATGCCAATGACTTG
823054 TATCGATACATCTTTTTCATGTATCGATACAATGCAACATGTATCGATACTTTTAAATGTGTATC
66 TATCGATACATCTTTTTCATGTATCGATACAATGCAACATGTATCGATACTTTTAAATGTGTATC
823119 GATACTTTTCAGGGTTTTGACCTTTTTAGCCTAAGTCAACCTTAATGTATCGATACAAATACCTA
131 GATACTTTTCAGGGTTTTGACCTTTTTAGCCTAAGTCAACCTTAATGTATCGATACAAATACCTA
823184 TGTATCGATAC
1 TGTATCGATAC
823195 TTTGATATAT
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
195 204 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (195 bp):
TGTATCGATACATACTGTGTGTATCAATACAAGTTTGGCTACTGCCAAGCAATGCCAATGACTTG
TATCGATACATCTTTTTCATGTATCGATACAATGCAACATGTATCGATACTTTTAAATGTGTATC
GATACTTTTCAGGGTTTTGACCTTTTTAGCCTAAGTCAACCTTAATGTATCGATACAAATACCTA
Found at i:823441 original size:8 final size:8
Alignment explanation
Indices: 823423--823457 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
823413 AAAGGAAAAT
823423 AAAAT-TA
1 AAAATATA
823430 AAAATATA
1 AAAATATA
823438 AAAATATA
1 AAAATATA
823446 AAAATATA
1 AAAATATA
823454 AAAA
1 AAAA
823458 AGAAAAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.19
8 22 0.81
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATATA
Found at i:824587 original size:2 final size:2
Alignment explanation
Indices: 824580--824613 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
824570 CATATTTTAC
824580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
824614 GAGTAGATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:826605 original size:34 final size:34
Alignment explanation
Indices: 826562--826632 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
826552 AAGGAATCTA
826562 AAATAAGTATGCTTACACTTGACTACGAATTGTT
1 AAATAAGTATGCTTACACTTGACTACGAATTGTT
826596 AAATAAGTATGCTTACACTTGACTACGAATTGTT
1 AAATAAGTATGCTTACACTTGACTACGAATTGTT
826630 AAA
1 AAA
826633 ATGAAGGCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (34 bp):
AAATAAGTATGCTTACACTTGACTACGAATTGTT
Found at i:828595 original size:33 final size:33
Alignment explanation
Indices: 828558--828624 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
828548 TTCAACGATT
828558 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
828591 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
828624 T
1 T
828625 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:828596 original size:13 final size:13
Alignment explanation
Indices: 828578--828602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
828568 CATAAAATGT
828578 TGTATCGATACAA
1 TGTATCGATACAA
828591 TGTATCGATACA
1 TGTATCGATACA
828603 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:828686 original size:13 final size:13
Alignment explanation
Indices: 828668--828695 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
828658 ATTACTCACA
828668 TGTATCGATACAT
1 TGTATCGATACAT
828681 TGTATCGATACAT
1 TGTATCGATACAT
828694 TG
1 TG
828696 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:828745 original size:52 final size:50
Alignment explanation
Indices: 828681--828821 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 50
828671 ATCGATACAT
*
828681 TGTATCGATACATTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
828733 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
828785 TGTATCGATACACTATTAAATGTATCGATACATGCAG
1 TGTATCGATACATTATT--ATGTATCGATACATGCAG
828822 ATAAATTTTC
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (50 bp):
TGTATCGATACATTATTATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:828829 original size:52 final size:52
Alignment explanation
Indices: 828701--828821 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
828691 CATTGATCTT
*
828701 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
828753 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
828805 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
828822 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:838465 original size:15 final size:16
Alignment explanation
Indices: 838446--838521 Score: 75
Period size: 16 Copynumber: 4.8 Consensus size: 16
838436 AACTTAATCT
838446 AAAATAATCTAAATT-
1 AAAATAATCTAAATTC
838461 AAAATGAAT-TAAATTC
1 AAAAT-AATCTAAATTC
* * *
838477 AAAATTATTTAAATTA
1 AAAATAATCTAAATTC
* *
838493 AAAATGATATAAATTC
1 AAAATAATCTAAATTC
838509 AAAATCAATCTAA
1 AAAAT-AATCTAA
838522 TTTTTTAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
15 13 0.26
16 32 0.64
17 5 0.10
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.33
Consensus pattern (16 bp):
AAAATAATCTAAATTC
Done.