Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold337
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 762055
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 2 of 5
Found at i:184516 original size:4 final size:4
Alignment explanation
Indices: 184507--184531 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
184497 AAATAATAAT
184507 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
184532 TATGATACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:189720 original size:13 final size:13
Alignment explanation
Indices: 189702--189727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
189692 CAATTTTTTG
189702 TGTATCGATACAT
1 TGTATCGATACAT
189715 TGTATCGATACAT
1 TGTATCGATACAT
189728 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:189813 original size:20 final size:20
Alignment explanation
Indices: 189788--189860 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
189778 ATCTTTTTTT
189788 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
189808 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
189829 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
189849 ATGTATCGATAC
1 ATGTATCGATAC
189861 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:189839 original size:41 final size:42
Alignment explanation
Indices: 189766--189860 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
189756 CTGCCAAGAA
*
189766 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
189808 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
189849 ATGTATCGATAC
1 ATGTATCGATAC
189861 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:192331 original size:13 final size:13
Alignment explanation
Indices: 192313--192351 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
192303 ATAATCACCC
*
192313 TGTATCGATACAG
1 TGTATCGATACAA
192326 TGTATCGATACAA
1 TGTATCGATACAA
192339 TGTATCGATACAA
1 TGTATCGATACAA
192352 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:192362 original size:20 final size:20
Alignment explanation
Indices: 192337--192415 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
192327 GTATCGATAC
192337 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
192357 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
192382 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
192402 CATGTATCGATACA
1 AATGTATCGATACA
192416 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:194442 original size:15 final size:15
Alignment explanation
Indices: 194422--194452 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
194412 ATTTCGTTTG
*
194422 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
194437 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
194452 G
1 G
194453 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:198512 original size:13 final size:13
Alignment explanation
Indices: 198494--198519 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
198484 CAATTTTTTG
198494 TGTATCGATACAT
1 TGTATCGATACAT
198507 TGTATCGATACAT
1 TGTATCGATACAT
198520 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:198605 original size:20 final size:20
Alignment explanation
Indices: 198580--198652 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
198570 ATCTTTTTTT
198580 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
198600 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
198621 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
198641 ATGTATCGATAC
1 ATGTATCGATAC
198653 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:198631 original size:41 final size:42
Alignment explanation
Indices: 198558--198652 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
198548 CTGCCAAGAA
*
198558 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
198600 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
198641 ATGTATCGATAC
1 ATGTATCGATAC
198653 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:199432 original size:34 final size:34
Alignment explanation
Indices: 199336--199437 Score: 93
Period size: 34 Copynumber: 3.0 Consensus size: 34
199326 GTGATCGATA
* *
199336 GTGGTTTAGTGAGAGAAGGAGATGGAG-TTCGATG
1 GTGGTTCAGTGGGAGAAGGAGATGGAGATT-GATG
* * *
199370 GTGGCTC-GATAGGAG-AGGAAGATAGAGATTGATG
1 GTGGTTCAG-TGGGAGAAGG-AGATGGAGATTGATG
* *
199404 GTGGTTCAGTGGGAGAATGAGATGGAGATCGATG
1 GTGGTTCAGTGGGAGAAGGAGATGGAGATTGATG
199438 CCAATGGAGA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
33 4 0.08
34 44 0.83
35 5 0.09
ACGTcount: A:0.28, C:0.05, G:0.43, T:0.24
Consensus pattern (34 bp):
GTGGTTCAGTGGGAGAAGGAGATGGAGATTGATG
Found at i:202236 original size:13 final size:13
Alignment explanation
Indices: 202218--202245 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
202208 CAAAGATCAA
202218 TGTATCGATACAT
1 TGTATCGATACAT
202231 TGTATCGATACAT
1 TGTATCGATACAT
202244 TG
1 TG
202246 AATAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:202240 original size:33 final size:33
Alignment explanation
Indices: 202198--202264 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
202188 AAATTCCAGA
202198 TGTATCGATACAAAG-ATCAATGTATCGATACAT
1 TGTATCGATACAAAGAAT-AATGTATCGATACAT
** *
202231 TGTATCGATACATTGAATAATGTATCGATGCAT
1 TGTATCGATACAAAGAATAATGTATCGATACAT
202264 T
1 T
202265 TTCTTGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAAAGAATAATGTATCGATACAT
Found at i:203202 original size:49 final size:49
Alignment explanation
Indices: 203136--203815 Score: 600
Period size: 49 Copynumber: 14.4 Consensus size: 49
203126 ATGTTAAAGA
* * ** *
203136 TGCCGATATGCTGATTCAAGGCGAATGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* * * *
203185 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTTTTAAAGATGGTTAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAT-G--AAGG
* * * * **
203237 TGCCAATGTGTTGATTCAAGGCCAACGACATCAGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* * *
203286 TGCCAATGTGCTGATTCAAGGCCAACGAAATTGGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* *
203335 TGCCAATATGCTGATTCAAGGCCAGCGATATGGGGC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* * * *
203374 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* *
203422 TGCCAATATGCTGATTCAAGGCCAGCGATTTTGGGC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* * *
203461 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
*
203509 TGCCAATATGCTGATTCAATGCCAGCGATATTGAG-C-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTG-GTCTTAAAGATGAAGG
* * * * * *
203548 TGCCAATGTGCTGATTCACGGCCAACGATATTAGTCTTAGAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* * **
203596 TGCCAATATACTGATTCAAGGCTAGCGACCTTGGTCTTAAAAATGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT--AAA-GATGAAGG
* *
203648 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* * * * *
203697 TGCCAATGTGCTGATTCAAGGTCGGCGACATTAGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* *
203746 TGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
* *
203795 TGCCAATGTGTTGATTCAAGG
1 TGCCAATATGCTGATTCAAGG
203816 TCGGCGACAT
Statistics
Matches: 513, Mismatches: 77, Indels: 82
0.76 0.11 0.12
Matches are distributed among these distances:
38 1 0.00
39 95 0.19
40 3 0.01
41 1 0.00
43 1 0.00
46 1 0.00
47 2 0.00
48 96 0.19
49 226 0.44
50 6 0.01
51 3 0.01
52 78 0.15
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
Found at i:203216 original size:101 final size:98
Alignment explanation
Indices: 203040--203815 Score: 372
Period size: 87 Copynumber: 8.2 Consensus size: 98
203030 CAAAGAATGA
* * * * * * * *
203040 CAATGTGCTGATTCATGGCCAGCAACATTAGACTTGAAGAAGAA--TGCCAATGTGCTGAGAT-A
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGA-TTCA
* * *
203102 AGGCCAACGACATTGGGCTTAGGAATGTTAAAGATGC
65 AGGCCAACAACATTGGTCTTA--AATGTT-AAGGTGC
* * * * **
203139 CGATATGCTGATTCAAGGCGAATGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
203204 GGCCAGCAACATTGGTTTTAAAGATGGTTAAGGTGC
66 GGCCAACAACATTGGTCTT-AA-AT-GTTAAGGTGC
* * *
203240 CAATGTGTTGATTCAAGGCCAACGACATCAGTCTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
*
203305 GGCCAACGAA-ATTGGTCTTAAA-GATGAAGGTGC
66 GGCCAAC-AACATTGGTCTTAAATG-TTAAGGTGC
* * ** * * *
203338 CAATATGCTGATTCAAGGCCAGCGATATGGGGC-T-----T----GTGCCAATATGTTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * **
203393 GGCCAGCGACATTGGTCTTAGA-GACAAGGTGC
66 GGCCAACAACATTGGTCTTAAATGTTAAGGTGC
** * ***
203425 CAATATGCTGATTCAAGGCC-A-G----C-GA-TT-TTG-GGCTTGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * **
203480 GGCCAGCGACATTGGTCTTAAA-GACAAGGTGC
66 GGCCAACAACATTGGTCTTAAATGTTAAGGTGC
* * * * * *
203512 CAATATGCTGATTCAATGCCAGCG--AT---A-TT-GAGCT-TA--TGCCAATGTGCTGATTCAC
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * * **
203567 GGCCAACGATATTAGTCTTAGA-GACAAGGTGC
66 GGCCAACAACATTGGTCTTAAATGTTAAGGTGC
* * * * ** * * *
203599 CAATATACTGATTCAAGGCTAGCGACCTTGGTCTTAAAAATGATGAAGGCGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTT--AAA-GATGAAGGTGCCAATGTGCTGATT
* * * * *
203664 CAAGGCCAGCGATATTGGACTTAAA-GATGAAGGTGC
63 CAAGGCCAACAACATTGGTCTTAAATG-TTAAGGTGC
* * ** * * * *
203700 CAATGTGCTGATTCAAGGTCGGCGACATTAGTCTTAAAGATGAAGGTGTCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * * *
203765 GGCCAGCGATATTGGACTTAAA-GATGAAGGTGC
66 GGCCAACAACATTGGTCTTAAATG-TTAAGGTGC
* *
203798 CAATGTGTTGATTCAAGG
1 CAATATGCTGATTCAAGG
203816 TCGGCGACAT
Statistics
Matches: 552, Mismatches: 89, Indels: 73
0.77 0.12 0.10
Matches are distributed among these distances:
80 2 0.00
85 1 0.00
87 163 0.30
88 36 0.07
89 6 0.01
92 1 0.00
93 2 0.00
96 1 0.00
97 4 0.01
98 110 0.20
99 37 0.07
100 39 0.07
101 144 0.26
102 6 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (98 bp):
CAATATGCTGATTCAAGGCCAACGACATCAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAACAACATTGGTCTTAAATGTTAAGGTGC
Found at i:203389 original size:39 final size:39
Alignment explanation
Indices: 203334--203578 Score: 175
Period size: 39 Copynumber: 5.8 Consensus size: 39
203324 AAAGATGAAG
203334 GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
* * **
203373 GTGCCAATATGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATA-TGG-----G-G-C-TT
* *
203421 GTGCCAATATGCTGATTCAAGGCCAGCGATTTTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
* * * *
203460 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
* * *
203499 AAAGACAAGGTGCCAATATGCTGATTCAATGCCAGCGATATTGAGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
* * * *
203547 ATGCCAATGTGCTGATTCACGGCCAACGATAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATAT
203579 TAGTCTTAGA
Statistics
Matches: 164, Mismatches: 24, Indels: 36
0.73 0.11 0.16
Matches are distributed among these distances:
39 91 0.55
40 4 0.02
41 1 0.01
42 1 0.01
45 1 0.01
46 1 0.01
47 3 0.02
48 62 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
Found at i:203448 original size:87 final size:87
Alignment explanation
Indices: 203285--203623 Score: 507
Period size: 87 Copynumber: 3.9 Consensus size: 87
203275 AAAGATGAAG
* *
203285 GTGCCAATGTGCTGATTCAAGGCCAACGAAATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
*
203350 TCAAGGCCAGCGATATGGGGCTT
65 TCAAGGCCAGCGATATTGGGCTT
* * * *
203373 GTGCCAATATGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
203438 CAAGGCCAGCGATTTTGGGCTT
66 CAAGGCCAGCGATATTGGGCTT
*
203460 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* *
203525 CAATGCCAGCGATATTGAGCTT
66 CAAGGCCAGCGATATTGGGCTT
* * * * * *
203547 ATGCCAATGTGCTGATTCACGGCCAACGATATTAGTCTTAGAGACAAGGTGCCAATATACTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
203612 CAAGGCTAGCGA
66 CAAGGCCAGCGA
203624 CCTTGGTCTT
Statistics
Matches: 228, Mismatches: 23, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
87 189 0.83
88 39 0.17
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (87 bp):
GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGGCTT
Found at i:203962 original size:34 final size:33
Alignment explanation
Indices: 203919--204110 Score: 201
Period size: 34 Copynumber: 5.8 Consensus size: 33
203909 TATTGGGCTT
* *
203919 AAAGGTGCCACGGAGTTGTGGACTT-ATAGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
203951 AAAGGGATGCCACGAAGGTGTGGGCTTAAAAGGGAA
1 AAA-GG-TGCCACGGAGTTGTGGGCTTAAAA-GGAA
* * * *
203987 AAGGGTGCCATGGAGTCGTGGGCTTAAAAAG-A
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
204019 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* * *
204053 AAAAGTGCCACGGAGTTCTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
204086 AAAGATGCCACGGACTTGTGGGCTT
1 AAAGGTGCCACGGAGTTGTGGGCTT
204111 TTGAAGGTTG
Statistics
Matches: 131, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
32 28 0.21
33 31 0.24
34 62 0.47
35 4 0.03
36 6 0.05
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.19
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:204124 original size:28 final size:28
Alignment explanation
Indices: 204091--204151 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
204081 AGGAAAAAGA
204091 TGCCACGGACTTGTGGGCTTTTGAAGGT
1 TGCCACGGACTTGTGGGCTTTTGAAGGT
*
204119 TGCCACTGACTTGTGGGCTTTTGAAGGT
1 TGCCACGGACTTGTGGGCTTTTGAAGGT
204147 TGCCA
1 TGCCA
204152 TGCTTTATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.15, C:0.20, G:0.33, T:0.33
Consensus pattern (28 bp):
TGCCACGGACTTGTGGGCTTTTGAAGGT
Found at i:214541 original size:12 final size:12
Alignment explanation
Indices: 214520--214552 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
214510 CATGCATGAA
*
214520 ATGAAGGTATGC
1 ATGAAAGTATGC
214532 ATGAAAGTATGC
1 ATGAAAGTATGC
214544 ATGAAAGTA
1 ATGAAAGTA
214553 AAAGCATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (12 bp):
ATGAAAGTATGC
Found at i:214761 original size:18 final size:17
Alignment explanation
Indices: 214734--214771 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
214724 ATTCGATATT
214734 TTTTTATTATCTT-TTTA
1 TTTTTATTAT-TTATTTA
214751 TTTTTATTTATTTATTTA
1 TTTTTA-TTATTTATTTA
214769 TTT
1 TTT
214772 ATTTTGTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTATTATTTATTTA
Found at i:214856 original size:18 final size:16
Alignment explanation
Indices: 214834--214872 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
214824 ATTATTATGG
214834 TTATTATATATATTTTT
1 TTATT-TATATATTTTT
*
214851 TATATTTATTTATTTTT
1 T-TATTTATATATTTTT
214868 TTATT
1 TTATT
214873 CATGTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 12 0.60
18 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATATATTTTT
Found at i:215722 original size:13 final size:13
Alignment explanation
Indices: 215704--215729 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
215694 CAATTTTTTG
215704 TGTATCGATACAT
1 TGTATCGATACAT
215717 TGTATCGATACAT
1 TGTATCGATACAT
215730 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:216414 original size:21 final size:21
Alignment explanation
Indices: 216373--216416 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
216363 CTCCCCTTTA
* *
216373 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
216394 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
216415 TC
1 TC
216417 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:218252 original size:13 final size:13
Alignment explanation
Indices: 218234--218259 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
218224 GTATCGATAT
218234 TGTATCGATACAA
1 TGTATCGATACAA
218247 TGTATCGATACAA
1 TGTATCGATACAA
218260 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:220345 original size:15 final size:15
Alignment explanation
Indices: 220325--220355 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
220315 ATTTCGTTTG
*
220325 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
220340 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
220355 G
1 G
220356 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:222188 original size:21 final size:21
Alignment explanation
Indices: 222159--222203 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
222149 AAGTTTTCAT
*
222159 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
222179 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
222201 TTT
1 TTT
222204 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:225109 original size:42 final size:43
Alignment explanation
Indices: 225072--225429 Score: 257
Period size: 42 Copynumber: 8.5 Consensus size: 43
225062 CAGTCTCCCA
*
225072 GGTCAAAG-CGACAGGCAGACTGAAGGGTAGGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAG
* * * * ** * *
225114 GGTCAAAGCCGACAAGTATATTTTA-GATGAGG-CAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTGAAGGGT-AGGAAAGTCTCTAG
** * *
225156 GGTCAAAGCCGACAAACAGATTGAAGGGTAAGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAG
* * * ** * *
225199 GGTTAAAGCCGACGGGCAGACTAAAGGGTAAAAAAGTCTTTAA
1 GGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAG
* * * * * * *
225242 AGTCAAAGCCGACAAGCAGACTTTAAGTG-AGGCAA-TCTCCAA
1 GGTCAAAGCCGACAGGCAGAC-TGAAGGGTAGGAAAGTCTCTAG
* * * *
225284 GGTCAAAGTCGATAGGCAGATTGAA-GGTAGGAAAGTCTGTAG
1 GGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAG
* ** * *
225326 GGTCAAAGCCGACAAGCAGACTTTA-GATAAGG-CAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTGAAGGGT-AGGAAAGTCTCTAG
* * *
225368 GGTCAAAGTCGACAGGCAGACT-AAAGGTAGGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAG
* *
225410 GGTCGAAGCCGATAGGCAGA
1 GGTCAAAGCCGACAGGCAGA
225430 TTTTAGATAA
Statistics
Matches: 240, Mismatches: 66, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
40 1 0.00
41 12 0.05
42 141 0.59
43 81 0.34
44 5 0.02
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (43 bp):
GGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAG
Found at i:225201 original size:85 final size:84
Alignment explanation
Indices: 225051--225211 Score: 225
Period size: 85 Copynumber: 1.9 Consensus size: 84
225041 ACAGGCAGAC
** *
225051 TTTAAATGAGGCAGTCTCCCAGGTCAAAGCGACAGGCAGACTGAAGGGTAGGAAAGTCTCCAGGG
1 TTTAAATGAGGCAGTCTCCCAGGTCAAAGCGACAAACAGACTGAAGGGTAAGAAAGTCTCCAGGG
225116 TCAAAGCCGACAAGTATAT
66 TCAAAGCCGACAAGTATAT
* * * *
225135 TTTAGATGAGGCAGTCT-CTAGGGTCAAAGCCGACAAACAGATTGAAGGGTAAGAAAGTCTCTAG
1 TTTAAATGAGGCAGTCTCCCA-GGTCAAAG-CGACAAACAGACTGAAGGGTAAGAAAGTCTCCAG
*
225199 GGTTAAAGCCGAC
64 GGTCAAAGCCGAC
225212 GGGCAGACTA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
83 2 0.03
84 24 0.36
85 41 0.61
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.19
Consensus pattern (84 bp):
TTTAAATGAGGCAGTCTCCCAGGTCAAAGCGACAAACAGACTGAAGGGTAAGAAAGTCTCCAGGG
TCAAAGCCGACAAGTATAT
Found at i:225228 original size:128 final size:127
Alignment explanation
Indices: 225072--225347 Score: 322
Period size: 128 Copynumber: 2.2 Consensus size: 127
225062 CAGTCTCCCA
* ** ** * *
225072 GGTCAAAG-CGACAGGCAGACTGAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGACAAGTATA-T
1 GGTCAAAGCCGACAGGCAGACTAAAGGGTAAAAAAGTCTCCAAAGTCAAAGCCGACAAGCAGACT
* * * *
225135 TTTAGATGAGGCAGTCTCTAGGGTCAAAGCCGACAAACAGATTGAAGGGTAAGAAAGTCTCTAG
66 TTAAG-TGAGGCAATCTCCAAGGTCAAAGCCGACAAACAGATTGAA-GGTAAGAAAGTCTCTAG
* * **
225199 GGTTAAAGCCGACGGGCAGACTAAAGGGTAAAAAAGTCTTTAAAGTCAAAGCCGACAAGCAGACT
1 GGTCAAAGCCGACAGGCAGACTAAAGGGTAAAAAAGTCTCCAAAGTCAAAGCCGACAAGCAGACT
* * ** * *
225264 TTAAGTGAGGCAATCTCCAAGGTCAAAGTCGATAGGCAGATTGAAGGTAGGAAAGTCTGTAG
66 TTAAGTGAGGCAATCTCCAAGGTCAAAGCCGACAAACAGATTGAAGGTAAGAAAGTCTCTAG
*
225326 GGTCAAAGCCGACAAGCAGACT
1 GGTCAAAGCCGACAGGCAGACT
225348 TTAGATAAGG
Statistics
Matches: 123, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
127 41 0.33
128 77 0.63
129 5 0.04
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (127 bp):
GGTCAAAGCCGACAGGCAGACTAAAGGGTAAAAAAGTCTCCAAAGTCAAAGCCGACAAGCAGACT
TTAAGTGAGGCAATCTCCAAGGTCAAAGCCGACAAACAGATTGAAGGTAAGAAAGTCTCTAG
Found at i:225544 original size:107 final size:106
Alignment explanation
Indices: 225359--225560 Score: 269
Period size: 107 Copynumber: 1.9 Consensus size: 106
225349 TAGATAAGGC
* * * ** *
225359 AGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAAGGTAGGAAAGTCTCCAGGGTCGAAGCCGATA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAGGGTCAAAGCCGATA
* * *
225424 GGCAGATTTTAGATAAAGTAGTCTCTAGGGAAGAGTAAGAA
66 GGCAAACTTTAGATAAAGCAGTCTCTAGGGAAGAGTAAGAA
* * *
225465 AGTCTCCAAGGTCAAAGCCGACAGGCAGAGTGAAGGGTAAAAAAGTCTCCAGGGTCAAAGTCGAT
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAAGGTAAAAAAGTCTCCAGGGTCAAAGCCGAT
* *
225530 AGGCAAACTTTAGATGAGGCAGTCTCTAGGG
65 AGGCAAACTTTAGATAAAGCAGTCTCTAGGG
225561 TCAAAGCCGA
Statistics
Matches: 81, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
106 27 0.33
107 54 0.67
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.19
Consensus pattern (106 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAGGGTCAAAGCCGATA
GGCAAACTTTAGATAAAGCAGTCTCTAGGGAAGAGTAAGAA
Found at i:225640 original size:84 final size:84
Alignment explanation
Indices: 225465--227023 Score: 437
Period size: 84 Copynumber: 18.4 Consensus size: 84
225455 AGAGTAAGAA
* * * * *
225465 AGTCTCCAAGGTCAAAGCCGACAGGCAGAGTGAAGGGTAAAAAAGTCTCCAGGGTCAAAG-TCGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAA-GGTAGAAAAGTCTCTAGGGTCAAAGCT-GA
* *
225529 TAGGCAAACTTTAGATGAGGC
64 CAGGCAGACTTTAGATGAGGC
* * * *
225550 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGAAGGCAGAAAAGTCTCCAAGGTCAAAGCTGACA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCTGACA
* *
225615 AGCAGACTTCAGATGAGGC
66 GGCAGACTTTAGATGAGGC
* ** * * * * * * * * **
225634 AATCTCTATAGTCAAAGCCGATAGACAAATTGAAGGTAGGAAAGTCTTTAGGGTGACAGCCAACA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCTGACA
*
225699 GGCAGACTTTAGATAAGGC
66 GGCAGACTTTAGATGAGGC
* * * * * * *
225718 AGTCTCCAAGGTAAAAGCTGATAGGCAGACTAAAGGGTA-AGAAAGTCTCTAGGGTCAAAGCGGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAA-GGTAGA-AAAGTCTCTAGGGTCAAAGCTGA
* ** * * **
225782 CAGGCAAACTGAAAGGTAAGAA
64 CAGGCAGACT-TTAGATGAGGC
* * ** * * * * *
225804 AGTCTTTAAGGTCAAAGCTAACACGCAGACTAAAGATAGAAAAGTCTCCAAGGTCAAAG-TCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCT-GAC
* * * **
225868 AAGCAGAC-TAAG-GGCAAGAA
65 AGGCAGACTTTAGATG--AGGC
** * * * *
225888 AGTCT-TCAGGGTCAAAGCTTACAGGTAGATTTGAGATGAAG-AAAGTCTCTAGGGTCAAAGCTG
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGA-CTGA-AGGTAGAAAAGTCTCTAGGGTCAAAGCTG
* *
225951 ACAGGTAGACTTTAAATGAGGC
63 ACAGGCAGACTTTAGATGAGGC
* * * * *
225973 AGTCTCCAGGGTCAAAGTCGACAGGCAGACTAAAGGTAGAAAAGTCTCTAAGGTCAAAGCTGATA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCTGACA
* * *
226038 GGTAGACTTTAGATAAGGT
66 GGCAGACTTTAGATGAGGC
* ** ** * * ** * ** *
226057 AGTCTCTAGGG---AAG-GGTA-AGAAAGTTTCCAAGGT--TAAAGTCGATAGGCAGACTTGAGA
1 AGTCTCTAGGGTCAAAGCCG-ACAGGCAGACT-GAAGGTAGAAAAGTCTCTAGG--GTC-AAAGC
* * * * *
226115 TGA-AGGTAGTCTCCAAGGTCAAAGTCGATAAGC
61 TGACAGGCAGACT------TTAGA-T-G--AGGC
* * * * ** * * * *
226148 AGACTTTA-GAT-AAGGTAGTCTCCAGG--GA---AAGGTA-AGAAAGTTTCCAAGGTTAAAG-T
1 AGTCTCTAGGGTCAA---AGCCGACAGGCAGACTGAAGGTAGA-AAAGTCTCTAGGGTCAAAGCT
* *
226204 CGACAGGCAGACTTGAGATGAGGAA
62 -GACAGGCAGACTTTAGATGAGG-C
* * ** * ** * * *
226229 AGCCTCTAGGGTCAAAGACGACAGGCAGACTTTAGAT-GAGGCAGTCTCCAGGGTTAAA-TTCGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGA-AAAGTCTCTAGGGTCAAAGCT-GA
* * * * **
226292 TAAGTAGA-TTGA-AGTGTAAGAA
64 CAGGCAGACTTTAGA-TG--AGGC
* * * * * * * *
226314 AGTCTCCAAGGACAAAGCCGATAGACAAACTGAAGGGTA-AGAAAGTCTCTAGGGTTAAAGCCGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAA-GGTAGA-AAAGTCTCTAGGGTCAAAGCTGA
* * ** * *
226378 CAAGCAAACTGAAGGT-AGGAA
64 CAGGCAGACTTTAGATGAGG-C
* * * * * * * *
226399 AGTCTCCACGGTCAAAGTCGACAAGTAGACTGAGGGCA-AGAAAGTCT-TCAGGGTCAAAGCCGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGA-AAAGTCTCT-AGGGTCAAAGCTGA
* **
226462 CAGGCAGA-TTTGAGATTAAGAA
64 CAGGCAGACTTT-AGA-TGAGGC
* * * * ** ** * ***
226484 AGTCTCTAAGGTCAAAGCTGACAAGTAGACTTTATATGGGTCAGTCTCTAGGGTCAAAGCTGACA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCTGACA
** * **
226549 GGCAGACTAAAGGT-AGTAA
66 GGCAGACTTTAGATGAG-GC
* * * ** * ** * *
226568 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTTTAGAT-GAGGCAGTCTCTAGGATCAAAGCTGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGA-AAAGTCTCTAGGGTCAAAGCTGAC
** * *
226632 AGGCAGACTGAAGGT-AGGAA
65 AGGCAGACTTTAGATGAGG-C
* * * * * * * *
226652 AGTCTCCAAGGTCAAAGCCGACAGGCAAATTTG-AGATTAGGAAAGTCTCTAAGGTCAAAGCCGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGA-CTGAAG-GTAGAAAAGTCTCTAGGGTCAAAGCTGA
* * * *
226716 CAAGTAGAATTTAGATGGGGC
64 CAGGCAGACTTTAGATGAGGC
* * * *
226737 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAGAAAAGTCTCCAAGGTCAAAGCTAACA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCTGACA
* * * *
226802 GCCAGACTTTATATAAGGT
66 GGCAGACTTTAGATGAGGC
* * * *
226821 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGAAGGTAGGAAAGTCTCTAAGGTCAAAG-TCAAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCT-GAC
* * * *
226885 AAGTAGACTTGAGATAAGGC
65 AGGCAGACTTTAGATGAGGC
* * * * * * * *
226905 AGTCTCTAAGGTCAAAGCCGATAGGCAAACTAAATGTA-AGAAAGTCTCCAAGGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGA-AAAGTCTCTAGGGTCAAAGCTGAC
* * *
226969 AAGCAGACTTTAGGTGAGGT
65 AGGCAGACTTTAGATGAGGC
* *
226989 AGTCT-TCAAGGTCAAAG-CGACAGGTAGACTGAAGG
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGACTGAAGG
227024 GTAAGAAAGT
Statistics
Matches: 1099, Mismatches: 295, Indels: 162
0.71 0.19 0.10
Matches are distributed among these distances:
79 9 0.01
80 15 0.01
81 25 0.02
82 10 0.01
83 32 0.03
84 547 0.50
85 337 0.31
86 76 0.07
87 7 0.01
88 2 0.00
89 4 0.00
90 14 0.01
91 8 0.01
92 8 0.01
94 1 0.00
95 2 0.00
96 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (84 bp):
AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAGAAAAGTCTCTAGGGTCAAAGCTGACA
GGCAGACTTTAGATGAGGC
Found at i:225674 original size:275 final size:275
Alignment explanation
Indices: 225178--225723 Score: 664
Period size: 275 Copynumber: 2.0 Consensus size: 275
225168 CAAACAGATT
* * * * * **
225178 GAAGGGTAAGAAAGTCTCTAGGGTTAAAGCCGACGGGCAGACTAAAGGGTAAAAAAGTCTTTAAA
1 GAAGAGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGGTAAAAAAGTCTCCAAA
* * *
225243 GTCAAAGCCGACAAGCAGACTTTAAGTGAGGCAATCTCCAAGGTCAAAGTCGATAGGCAGATTGA
66 GTCAAAGCCGACAAGCAAACTTTAAGTGAGGCAATCTCCAAGGTCAAAGCCGATAGGCAGACTGA
* * ** * * * *
225308 AGGTAGGAAAGTCTGTAGGGTCAAAGCCGACAAGCAGACTTTAGATAAGGCAGTCTCTAGGGTCA
131 AGGCAGAAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTCAGATAAGGCAATCTCTAGAGTCA
* * * * * *
225373 AAGTCGACAGGCAGACTAAAGGTAGGAAAGTCTCCAGGGTCGA-AGCCGATAGGCAGATTTTAGA
196 AAGCCGACAGACAAACTAAAGGTAGGAAAGTCTCCAGGGT-GACAGCCAACAGGCAGACTTTAGA
*
225437 TAAAGTAGTCTCTAGG
260 TAAAGCAGTCTCTAGG
* * **
225453 GAAGAGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAGTGAAGGGTAAAAAAGTCTCCAGG
1 GAAGAGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGGTAAAAAAGTCTCCAAA
* * * * * *
225518 GTCAAAGTCGATAGGCAAACTTT-AGATGAGGCAGTCTCTAGGGTCAAAGCCGATAGGCAGACTG
66 GTCAAAGCCGACAAGCAAACTTTAAG-TGAGGCAATCTCCAAGGTCAAAGCCGATAGGCAGACTG
* * *
225582 AAGGCAGAAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTCAGATGAGGCAATCTCTATAGTC
130 AAGGCAGAAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTCAGATAAGGCAATCTCTAGAGTC
* * * **
225647 AAAGCCGATAGACAAATTGAAGGTAGGAAAGTCTTTAGGGTGACAGCCAACAGGCAGACTTTAGA
195 AAAGCCGACAGACAAACTAAAGGTAGGAAAGTCTCCAGGGTGACAGCCAACAGGCAGACTTTAGA
*
225712 TAAGGCAGTCTC
260 TAAAGCAGTCTC
225724 CAAGGTAAAA
Statistics
Matches: 225, Mismatches: 44, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
274 4 0.02
275 221 0.98
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.18
Consensus pattern (275 bp):
GAAGAGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGGTAAAAAAGTCTCCAAA
GTCAAAGCCGACAAGCAAACTTTAAGTGAGGCAATCTCCAAGGTCAAAGCCGATAGGCAGACTGA
AGGCAGAAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTCAGATAAGGCAATCTCTAGAGTCA
AAGCCGACAGACAAACTAAAGGTAGGAAAGTCTCCAGGGTGACAGCCAACAGGCAGACTTTAGAT
AAAGCAGTCTCTAGG
Found at i:225944 original size:127 final size:126
Alignment explanation
Indices: 225461--226067 Score: 346
Period size: 127 Copynumber: 4.8 Consensus size: 126
225451 GGGAAGAGTA
* * * *
225461 AGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAGTGAAGGGTAAAAAAGTCTCCAGGGTCAAAG-
1 AGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACT-AAGGG-AAGAAAGTCTCTAGGGTCAAAGC
* * * ** ** * * * *
225525 TCGATAGGCAAACTTT-AGATG-AGGCAGTCTCTAGGGTCAAAGCCGATAGGCAGAC-T-GAAGG
64 T-GACAGGTAGA-TTTGAGATGAAGAAAGTCTCTAGGGTCAAAGCTAACACGCAGACTTAAAATG
* * * * * **
225586 CAGAAAAGTCTCCAAGGTCAAAG-CTGACAAGCAGACTTCAGATGAGGCAA-TCTCTATAGTCAA
1 -AG-AAAGTCTCCAAGGTCAAAGTC-GACAGGCAGAC-TAAG-GGAAGAAAGTCTCTAGGGTCAA
* * ** * * * * * * * * * *
225649 AGCCGATAGACA-AATTGA-AGGTAGGAAAGTCTTTAGGGTGACAGCCAACAGGCAGACTTTAGA
61 AGCTGACAGGTAGATTTGAGATG-AAGAAAGTCTCTAGGGTCAAAGCTAACACGCAGACTTAAAA
*
225712 TA
125 TG
** * *
225714 AGGCAGTCTCCAAGGTAAAAG-CTGATAGGCAGACTAAAGGGTAAGAAAGTCTCTAGGGTCAAAG
1 AGAAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACT-AAGGG-AAGAAAGTCTCTAGGGTCAAAG
* * ** * * * *
225778 CGGACAGGCA-AACTGAAAGGTAAGAAAGTCTTTAAGGTCAAAGCTAACACGCAGAC-TAAAGAT
63 CTGACAGGTAGATTTGAGATG-AAGAAAGTCTCTAGGGTCAAAGCTAACACGCAGACTTAAA-AT
225841 -
126 G
*
225841 AGAAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACTAAGGGCAAGAAAGTCT-TCAGGGTCAAAG
1 AG-AAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAGGG-AAGAAAGTCTCT-AGGGTCAAAG
* * * * *
225905 CTTACAGGTAGATTTGAGATGAAGAAAGTCTCTAGGGTCAAAGCTGACAGGTAGACTTTAAATG
63 CTGACAGGTAGATTTGAGATGAAGAAAGTCTCTAGGGTCAAAGCTAACACGCAGACTTAAAATG
** * * * *
225969 AGGCAGTCTCCAGGGTCAAAGTCGACAGGCAGACTAAAGGTAGAAAAGTCTCTAAGGTCAAAGCT
1 AGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAGGGAAG-AAAGTCTCTAGGGTCAAAGCT
* **
226034 GATAGGTAGACTTT-AGAT-AAGGTAGTCTCTAGGG
65 GACAGGTAGA-TTTGAGATGAAGAAAGTCTCTAGGG
226068 AAGGGTAAGA
Statistics
Matches: 378, Mismatches: 79, Indels: 48
0.75 0.16 0.10
Matches are distributed among these distances:
124 4 0.01
125 4 0.01
126 98 0.26
127 192 0.51
128 79 0.21
129 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (126 bp):
AGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAGGGAAGAAAGTCTCTAGGGTCAAAGCTG
ACAGGTAGATTTGAGATGAAGAAAGTCTCTAGGGTCAAAGCTAACACGCAGACTTAAAATG
Found at i:226045 original size:42 final size:43
Alignment explanation
Indices: 225461--226045 Score: 276
Period size: 42 Copynumber: 13.8 Consensus size: 43
225451 GGGAAGAGTA
* * * *
225461 AGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAGTGAAGGGTA-
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACT-AAAGGTAG
* * * * * ** *
225504 AAAAAGTCTCCAGGGTCAAAG-TCGATAGGCAAACTTTAGAT-G
1 AGAAAGTCTCTAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAG
** * * * * *
225546 AGGCAGTCTCTAGGGTCAAAGCCGATAGGCAGACTGAAGGCAG
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAG
* * ** *
225589 A-AAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTCAGAT-G
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAG
* * * * * * *
225630 AGGCAA-TCTCTATA-GTCAAAGCCGATAGACAAATTGAAGGTAG
1 A-GAAAGTCTCTA-AGGTCAAAGCTGACAGGCAGACTAAAGGTAG
* * * * ** ** *
225673 -GAAAGTCTTTAGGGTGACAGCCAACAGGCAGACTTTAGATA-
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAG
** * * *
225714 AGGCAGTCTCCAAGGTAAAAGCTGATAGGCAGACTAAAGGGTA-
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAA-GGTAG
* * *
225757 AGAAAGTCTCTAGGGTCAAAGCGGACAGGCAAACTGAAAGGTA-
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACT-AAAGGTAG
* * * *
225800 AGAAAGTCTTTAAGGTCAAAGCTAACACGCAGACTAAAGATAG
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAG
* * * *
225843 A-AAAGTCTCCAAGGTCAAAG-TCGACAAGCAGACTAAGGGCA-
1 AGAAAGTCTCTAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAG
* * * * ** *
225884 AGAAAGTCT-TCAGGGTCAAAGCTTACAGGTAGATTTGAGAT-G
1 AGAAAGTCTCT-AAGGTCAAAGCTGACAGGCAGACTAAAGGTAG
* *
225926 AAGAAAGTCTCTAGGGTCAAAGCTGACAGGTAGACTTTAAA--T-G
1 -AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGAC--TAAAGGTAG
** * *
225969 AGGCAGTCTCCAGGGTCAAAG-TCGACAGGCAGACTAAAGGTAG
1 AGAAAGTCTCTAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAG
* *
226012 A-AAAGTCTCTAAGGTCAAAGCTGATAGGTAGACT
1 AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACT
226046 TTAGATAAGG
Statistics
Matches: 399, Mismatches: 115, Indels: 57
0.70 0.20 0.10
Matches are distributed among these distances:
40 4 0.01
41 8 0.02
42 247 0.62
43 134 0.34
44 4 0.01
45 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.18
Consensus pattern (43 bp):
AGAAAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAG
Found at i:226144 original size:43 final size:42
Alignment explanation
Indices: 226083--226171 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 42
226073 TAAGAAAGTT
* *
226083 TCCAAGGTTAAAGTCGATAGGCAGACTTGAGATGAAGGTAGTC
1 TCCAAGGTCAAAGTCGATAAGCAGACTTGAGAT-AAGGTAGTC
*
226126 TCCAAGGTCAAAGTCGATAAGCAGACTTTAGATAAGGTAGTC
1 TCCAAGGTCAAAGTCGATAAGCAGACTTGAGATAAGGTAGTC
226168 TCCA
1 TCCA
226172 GGGAAAGGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
42 13 0.30
43 30 0.70
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (42 bp):
TCCAAGGTCAAAGTCGATAAGCAGACTTGAGATAAGGTAGTC
Found at i:226175 original size:107 final size:106
Alignment explanation
Indices: 225977--226281 Score: 398
Period size: 107 Copynumber: 2.9 Consensus size: 106
225967 TGAGGCAGTC
* * ** * * *
225977 TCCAGGGTCAAAGTCGACAGGCAGACTAAAGGT-AGAAAAGTCTCTAAGGTCAAAGCTGATAGGT
1 TCCAAGGTTAAAGTCGACAGGCAGACTTGAGATGAGGAAAGTCTCTAAGGTCAAAGC-GATAGGC
* *
226041 AGACTTTAGATAAGGTAGTCTCTAGGGAAGGGTAAGAAAGTT
65 AGACTTTAGATAAGGTAGTCTCCAGGGAAAGGTAAGAAAGTT
* * * *
226083 TCCAAGGTTAAAGTCGATAGGCAGACTTGAGATGAAGG-TAGTCTCCAAGGTCAAAGTCGATAAG
1 TCCAAGGTTAAAGTCGACAGGCAGACTTGAGATG-AGGAAAGTCTCTAAGGTCAAAG-CGATAGG
226147 CAGACTTTAGATAAGGTAGTCTCCAGGGAAAGGTAAGAAAGTT
64 CAGACTTTAGATAAGGTAGTCTCCAGGGAAAGGTAAGAAAGTT
* * *
226190 TCCAAGGTTAAAGTCGACAGGCAGACTTGAGATGAGGAAAGCCTCTAGGGTCAAAGACGACAGGC
1 TCCAAGGTTAAAGTCGACAGGCAGACTTGAGATGAGGAAAGTCTCTAAGGTCAAAG-CGATAGGC
* *
226255 AGACTTTAGATGAGGCAGTCTCCAGGG
65 AGACTTTAGATAAGGTAGTCTCCAGGG
226282 TTAAATTCGA
Statistics
Matches: 172, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
106 30 0.17
107 139 0.81
108 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (106 bp):
TCCAAGGTTAAAGTCGACAGGCAGACTTGAGATGAGGAAAGTCTCTAAGGTCAAAGCGATAGGCA
GACTTTAGATAAGGTAGTCTCCAGGGAAAGGTAAGAAAGTT
Found at i:226421 original size:42 final size:42
Alignment explanation
Indices: 226176--227034 Score: 457
Period size: 42 Copynumber: 20.3 Consensus size: 42
226166 TCTCCAGGGA
* * * * *
226176 AAGGTAAGAAAGTTTCCAAGGTTAAAGTCGACAGGCAGACTTG
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-TG
* * * * *
226219 -AGATGAGGAAAGCCTCTAGGGTCAAAGACGACAGGCAGACTT
1 AAGGT-AGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * * * ** * * * *
226261 TAGATGAGG-CAGTCTCCAGGGTTAAATTCGATAAGTAGATTG
1 AAGGT-AGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * * *
226303 AAGTGTAAGAAAGTCTCCAAGGACAAAGCCGATAGACAAACTG
1 AAG-GTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * *
226346 AAGGGTAAGAAAGTCTCTAGGGTTAAAGCCGACAAGCAAACTG
1 AA-GGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * *
226389 AAGGTAGGAAAGTCTCCACGGTCAAAGTCGACAAGTAGACTG
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * *
226431 AGGGCAAGAAAGTCT-TCAGGGTCAAAGCCGACAGGCAGATTTG
1 AAGGTAGGAAAGTCTCT-AAGGTCAAAGCCGACAGGCAGA-CTG
* * * * * *
226474 -AGATTAAGAAAGTCTCTAAGGTCAAAGCTGACAAGTAGACTT
1 AAG-GTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* ** * ** * * *
226516 TATATGGGTCAGTCTCTAGGGTCAAAGCTGACAGGCAGACTA
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * *
226558 AAGGTAGTAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * *
226600 TAGATGAGG-CAGTCTCT-AGGATCAAAGCTGATAGGCAGACTG
1 AAGGT-AGGAAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACTG
* * *
226642 AAGGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAAATTTG
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CTG
* * * * *
226685 -AGATTAGGAAAGTCTCTAAGGTCAAAGCCGACAAGTAGAATT
1 AAG-GTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * ** * *
226727 TAGATGGGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTA
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * ** * *
226769 AAGGTAGAAAAGTCTCCAAGGTCAAAGCTAACAGCCAGACTT
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* ** * * *
226811 TATATAAGG-TAGTCTCTAGGGTCAAAGCCGATAGGCAGACTG
1 AAGGT-AGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * *
226853 AAGGTAGGAAAGTCTCTAAGGTCAAAGTCAACAAGTAGACTTG
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-TG
* * * * *
226896 -AGATAAGG-CAGTCTCTAAGGTCAAAGCCGATAGGCAAACTA
1 AAGGT-AGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * * * *
226937 AATGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTT
1 AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
* * *
226979 TAGGTGAGG-TAGTCT-TCAAGGTCAAAG-CGACAGGTAGACTG
1 AAGGT-AGGAAAGTCTCT-AAGGTCAAAGCCGACAGGCAGACTG
*
227020 AAGGGTAAGAAAGTC
1 AA-GGTAGGAAAGTC
227035 CATATGGTTT
Statistics
Matches: 607, Mismatches: 182, Indels: 55
0.72 0.22 0.07
Matches are distributed among these distances:
41 26 0.04
42 404 0.67
43 175 0.29
44 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.19
Consensus pattern (42 bp):
AAGGTAGGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
Found at i:226487 original size:127 final size:126
Alignment explanation
Indices: 226178--227034 Score: 436
Period size: 127 Copynumber: 6.8 Consensus size: 126
226168 TCCAGGGAAA
* * * * *
226178 GGTAAGAAAGT-TTCCAAGGTTAAAGTCGACAGGCAGACTTGAGATGAGGAAAGCCTCTAGGGTC
1 GGTAAGAAAGTCTT-CAAGGTCAAAGCCGACAGGCAGATTTGAGAT-AAGAAAGTCTCTAGGGTC
* ** * * * * * * * *
226242 AAAGACGACAGGCAGACTTTAGATGAGG-CAGTCTCCAGGGTTAAATTCGATAAGTAGATTGAAG
64 AAAGCCGACAGGCAGACTGAAGGT-AGGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACTG-AG
* * * * * ** * *
226306 TGTAAGAAAGTCTCCAAGGACAAAGCCGATAGACA-AACTGAAGGGTAAGAAAGTCTCTAGGGTT
1 GGTAAGAAAGTCTTCAAGGTCAAAGCCGACAGGCAGATTTG-A-GATAAGAAAGTCTCTAGGGTC
* * * *
226370 AAAGCCGACAAGCAAACTGAAGGTAGGAAAGTCTCCACGGTCAAAGTCGACAAGTAGACTGAG
64 AAAGCCGACAGGCAGACTGAAGGTAGGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACTGAG
* * *
226433 GGCAAGAAAGTCTTCAGGGTCAAAGCCGACAGGCAGATTTGAGATTAAGAAAGTCTCTAAGGTCA
1 GGTAAGAAAGTCTTCAAGGTCAAAGCCGACAGGCAGATTTGAGA-TAAGAAAGTCTCTAGGGTCA
* * * ** ** * ** * * * * *
226498 AAGCTGACAAGTAGACTTTATATGGGTCAGTCTCTAGGGTCAAAG-CTGACAGGCAGACTAAA
65 AAGCCGACAGGCAGACTGAAGGTAGGAAAGTCTCCAAGGTCAAAGTC-GACAAGCAGACTGAG
* * * ** *
226560 GGT-AGTAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTT-AGATGAGGCAGTCTCTAGGATC
1 GGTAAG-AAAGTCTTCAAGGTCAAAGCCGACAGGCAGA-TTTGAGATAAGAAAGTCTCTAGGGTC
* * * * * *
226623 AAAGCTGATAGGCAGACTGAAGGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAAATTTGAG
64 AAAGCCGACAGGCAGACTGAAGGTAGGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGA-CTGAG
** * * * ** **
226687 ATTAGGAAAGTC-TCTAAGGTCAAAGCCGACAAGTAGAATTT-AGATGGGGCAGTCTCTAGGGTC
1 GGTAAGAAAGTCTTC-AAGGTCAAAGCCGACAGGCAG-ATTTGAGATAAGAAAGTCTCTAGGGTC
* * * *
226750 AAAGCCGACAGGCAGACTAAAGGTAGAAAAGTCTCCAAGGTCAAAG-CTA-ACAGCCAGACTTTA
64 AAAGCCGACAGGCAGACTGAAGGTAGGAAAGTCTCCAAGGTCAAAGTCGACA-AG-CAGAC-TGA
226813 -
126 G
** ** * * * * * *
226813 TATAAGGTAGTC-TCTAGGGTCAAAGCCGATAGGCAGA-CTGAAGGTAGGAAAGTCTCTAAGGTC
1 GGTAAGAAAGTCTTC-AAGGTCAAAGCCGACAGGCAGATTTG-AGATAAGAAAGTCTCTAGGGTC
* * * * * * * * * * * * *
226876 AAAGTCAACAAGTAGACTTG-AGATAAGG-CAGTCTCTAAGGTCAAAGCCGATAGGCAAACTAAA
64 AAAGCCGACAGGCAGAC-TGAAGGT-AGGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACTGAG
* * * * * ** *
226939 TGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTT-AGGTGAGGTAGTCT-TCAAGGTC
1 GGTAAGAAAGTCTTCAAGGTCAAAGCCGACAGGCAGA-TTTGAGATAAGAAAGTCTCT-AGGGTC
* *
227002 AAAG-CGACAGGTAGACTGAAGGGTAAGAAAGTC
64 AAAGCCGACAGGCAGACTGAA-GGTAGGAAAGTC
227035 CATATGGTTT
Statistics
Matches: 557, Mismatches: 141, Indels: 64
0.73 0.19 0.08
Matches are distributed among these distances:
124 3 0.01
125 18 0.03
126 199 0.36
127 237 0.43
128 97 0.17
129 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (126 bp):
GGTAAGAAAGTCTTCAAGGTCAAAGCCGACAGGCAGATTTGAGATAAGAAAGTCTCTAGGGTCAA
AGCCGACAGGCAGACTGAAGGTAGGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACTGAG
Found at i:226667 original size:211 final size:211
Alignment explanation
Indices: 226438--226925 Score: 726
Period size: 211 Copynumber: 2.3 Consensus size: 211
226428 CTGAGGGCAA
* * *
226438 GAAAGTCTTCAGGGTCAAAGCCGACAGGCAGATTTGAGATTAAGAAAGTCTCTAAGGTCAAAGCT
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGATTTGAGATTAAGAAAGTCTCTAAGGTCAAAGCC
* * * * *
226503 GACAAGTAGACTTTATATGGGTCAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAGTAA
66 GACAAGTAGAATTTAGATGGGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAGAAA
* * * * *
226568 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTTTAGATGAGGCAGTCTCTAGGATCAAAGCTGATA
131 AGTCTCCAAGGTCAAAGCCAACAGCCAGACTTTAGATAAGGCAGTCTCTAGGATCAAAGCCGATA
226633 GGCAGACTGAAGGTAG
196 GGCAGACTGAAGGTAG
* *
226649 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAAATTTGAGATTAGGAAAGTCTCTAAGGTCAAAGCC
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGATTTGAGATTAAGAAAGTCTCTAAGGTCAAAGCC
226714 GACAAGTAGAATTTAGATGGGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAGAAA
66 GACAAGTAGAATTTAGATGGGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAGAAA
* * * *
226779 AGTCTCCAAGGTCAAAGCTAACAGCCAGACTTTATATAAGGTAGTCTCTAGGGTCAAAGCCGATA
131 AGTCTCCAAGGTCAAAGCCAACAGCCAGACTTTAGATAAGGCAGTCTCTAGGATCAAAGCCGATA
226844 GGCAGACTGAAGGTAG
196 GGCAGACTGAAGGTAG
* * * * * * **
226860 GAAAGTCTCTAAGGTCAAAGTCAACAAGTAGACTTGAGA-TAAGGCAGTCTCTAAGGTCAAAGCC
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGATTTGAGATTAAGAAAGTCTCTAAGGTCAAAGCC
226924 GA
66 GA
226926 TAGGCAAACT
Statistics
Matches: 248, Mismatches: 29, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
210 24 0.10
211 224 0.90
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (211 bp):
GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGATTTGAGATTAAGAAAGTCTCTAAGGTCAAAGCC
GACAAGTAGAATTTAGATGGGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAGAAA
AGTCTCCAAGGTCAAAGCCAACAGCCAGACTTTAGATAAGGCAGTCTCTAGGATCAAAGCCGATA
GGCAGACTGAAGGTAG
Found at i:228995 original size:20 final size:20
Alignment explanation
Indices: 228953--229006 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
228943 AAGTACCCAG
* * *
228953 ATGTATCGATGCATTTTTCA
1 ATGTATCGATACATGTATCA
*
228973 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATCA
*
228993 ATGTATAGATACAT
1 ATGTATCGATACAT
229007 TCTGTCTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATGTATCA
Found at i:234754 original size:13 final size:13
Alignment explanation
Indices: 234736--234761 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
234726 CAATTTTTGG
234736 TGTATCGATACAT
1 TGTATCGATACAT
234749 TGTATCGATACAT
1 TGTATCGATACAT
234762 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:234773 original size:32 final size:33
Alignment explanation
Indices: 234716--234779 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
234706 TACAAGCCAA
**
234716 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
234749 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
234780 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:234786 original size:19 final size:18
Alignment explanation
Indices: 234716--234786 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
234706 TACAAGCCAA
234716 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
234736 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
234749 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
234768 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
234787 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:240921 original size:34 final size:34
Alignment explanation
Indices: 240878--240943 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
240868 TACCTCAATA
240878 AGATCGACTACTAGGACTAAGCTAATTGACTTGG
1 AGATCGACTACTAGGACTAAGCTAATTGACTTGG
*
240912 AGATCGACTACTAGGACTAAGCTGATTGACTT
1 AGATCGACTACTAGGACTAAGCTAATTGACTT
240944 ACTCCAAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (34 bp):
AGATCGACTACTAGGACTAAGCTAATTGACTTGG
Found at i:245523 original size:57 final size:57
Alignment explanation
Indices: 245435--246219 Score: 942
Period size: 57 Copynumber: 13.7 Consensus size: 57
245425 CGTTCGTCTC
* * * *
245435 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * * * *
245492 TTCAAAGCCCACAAGTCATTGGCATCCTTTCAAAACCTATAAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* *
245548 TTCAAAGCCCACAAATCAGTGGCAGTCTTTTCAAAGCCCACAAGTTAGTGGCA-TCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
245605 TTCAAAGCCCACAAGTCAATGGCATATTTTCAAAGCGCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
245662 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
245719 TTCAAAGCCCACAAGTCAATGGCACTTTTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
245776 TTCAAAGCCCACAAGTCAG-GGACA-CTTTTTCAAAGCCCATAAGTCAATGGCAC-CAT
1 TTCAAAGCCCACAAGTCAGTGG-CATC-TTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
245832 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
245889 TTCAAAGCCCACAAGTCAATGGCATATTTTCAAAGCGCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
245946 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* *
246003 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCTACAAGTTAGTGGCA-TCCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCACT-CTT
* * * * * * *
246061 TT-AAAGCCCATAAGTCAGTGGAACCATTTCAAAGTCCACAAGTCAATGGCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
246117 TT-AAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGCCAATGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGG-CACTCTT
*
246175 TTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAAGCCCACA
1 TTCAAAGCCCACA--AGTCAGTGGC-A-TCTTTTCAAAGCCCACA
246220 CAAGTTAATG
Statistics
Matches: 626, Mismatches: 82, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
56 168 0.27
57 359 0.57
58 62 0.10
59 10 0.02
61 8 0.01
62 19 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (57 bp):
TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
Found at i:245578 original size:85 final size:85
Alignment explanation
Indices: 245435--246237 Score: 988
Period size: 85 Copynumber: 9.4 Consensus size: 85
245425 CGTTCGTCTC
*
245435 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
*
245500 CCACAAGTCATTGGCATCCT
66 CCACAAGTCAGTGGCATCCT
* * * * * * *
245520 TTCAAAACCTATAAGTCAGTGGCATCCTTTCAAAGCCCACAAATCAGTGGCAGTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
* *
245585 CCACAAGTTAGTGGCATCTT
66 CCACAAGTCAGTGGCATCCT
* * ** * *
245605 TTCAAAGCCCACAAGTCAATGGCATATTTTCAAAGCGCACAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
* *
245670 CCACAAGTTAGTGGCACCCT
66 CCACAAGTCAGTGGCATCCT
* *
245690 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCACTTTTTTCAAAG
1 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAG
245755 CCCACAAGTCAGTGGCATCCT
65 CCCACAAGTCAGTGGCATCCT
* * * *
245776 TTCAAAGCCCACAAGTCAG-GGACA-CTTTTTCAAAGCCCATAAGTCAATGGCAC-CATTTCAAA
1 TTCAAAGCCCACAAGTTAGTGG-CATC-CTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAA
* *
245838 GCCCACAAGTTAGTGGCACTCTT
64 GCCCACAAGTCAGTGGCA-TCCT
*
245861 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCA-TATTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
* *
245925 GCACAAGTCAGTGGCACTCTT
66 CCACAAGTCAGTGGCA-TCCT
* * *
245946 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
*
246011 CCACAAGTCAGTGGCACTCTT
66 CCACAAGTCAGTGGCA-TCCT
* * * * * * *
246032 TTCAAAGCCTACAAGTTAGTGGCATCCTTTTAAAGCCCATAAGTCAGTGGAAC-CATTTCAAAGT
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
* *
246096 CCACAAGTCAATGGCACCCT
66 CCACAAGTCAGTGGCATCCT
* * * *
246116 TTTAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGCCAATGGTAACTCTTTTCAAA
1 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAATGG-CACTCTTTTCAAA
* *
246181 GCCCACACGAGTCGGTGGCAACTCTT
64 GCCCACA--AGTCAGTGGC-A-TCCT
*
246207 TTCAAAGCCCACACAAGTTAATGGCA-CCTTT
1 TTCAAAG-CC-CACAAGTTAGTGGCATCCTTT
246238 TTTTTAAAAA
Statistics
Matches: 626, Mismatches: 75, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
84 49 0.08
85 367 0.59
86 159 0.25
87 14 0.02
89 8 0.01
90 1 0.00
91 12 0.02
92 2 0.00
93 14 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGC
CCACAAGTCAGTGGCATCCT
Found at i:245691 original size:142 final size:143
Alignment explanation
Indices: 245435--246219 Score: 1073
Period size: 142 Copynumber: 5.5 Consensus size: 143
245425 CGTTCGTCTC
* *
245435 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCA-TCTTTTCAAAG
* * * * * * *
245499 CCCACAAGTCATTGGCA-TCCTTTCAAAACCTATAAGTCAGTGGCATCCTTTCAAAGCCCACAAA
65 CCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
* *
245563 TCAGTGGCAGTCTT
130 TTAGTGGCACTCTT
* *
245577 TTCAAAGCCCACAAGTTAGTGGCA-TCTTTTCAAAGCCCACAAGTCAATGGCATATTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAGC
* *
245641 GCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGT
66 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
245706 TAGTGGCACTCTT
131 TAGTGGCACTCTT
* * * *
245719 TTCAAAGCCCACAAGTCAATGGCACTTTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAGC
* * *
245784 CCACAAGTCAG-GGACACT-TTTTCAAAGCCCATAAGTCAATGGCACCATTTCAAAGCCCACAAG
66 CCACAAGTCAGTGG-CACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
245847 TTAGTGGCACTCTT
130 TTAGTGGCACTCTT
* * *
245861 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAATGGCATATTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAGC
* *
245925 GCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGT
66 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
245990 TAGTGGCACTCTT
131 TAGTGGCACTCTT
* * *
246003 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCTACAAGTTAGTGGCATCCTTTT-AAAG
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCAT-CTTTTCAAAG
* * * * * *
246067 CCCATAAGTCAGTGGAAC-CATTTCAAAGTCCACAAGTCAATGGCACCCTTTTAAAGCCCACAAG
65 CCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
246131 TTAGTGGCACTCTT
130 TTAGTGGCACTCTT
* * * **
246145 TTCAAAGCCCACAAGCCAATGGTAACTCTTTTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTC
1 TTCAAAGCCCACAAGTCAGTGG-CACTCTTTTCAAAGCCCACA--AGTCAATGGC-A-TCTTTTC
246210 AAAGCCCACA
61 AAAGCCCACA
246220 CAAGTTAATG
Statistics
Matches: 572, Mismatches: 57, Indels: 23
0.88 0.09 0.04
Matches are distributed among these distances:
141 74 0.13
142 358 0.63
143 112 0.20
144 4 0.01
145 8 0.01
146 6 0.01
147 10 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (143 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAGC
CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
TAGTGGCACTCTT
Found at i:247148 original size:20 final size:20
Alignment explanation
Indices: 247091--247148 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
247081 AAAGTACCCA
* *
247091 AATGTATCGATACATGT-ATG
1 AATGTATCGATACAT-TCTTC
247111 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
247131 AATGTATCGATACATTCT
1 AATGTATCGATACATTCT
247149 ATCTTTTTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 1 0.03
20 34 0.97
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:250202 original size:13 final size:13
Alignment explanation
Indices: 250186--250210 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
250176 TTCTTCTTAC
250186 TTTTTTAATTTTA
1 TTTTTTAATTTTA
250199 TTTTTTAATTTT
1 TTTTTTAATTTT
250211 TTTATGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTAATTTTA
Found at i:263509 original size:32 final size:33
Alignment explanation
Indices: 263473--263547 Score: 91
Period size: 32 Copynumber: 2.3 Consensus size: 33
263463 TCTTCTTTTA
* *
263473 TTGCATGATTTAGCCATTTGTT-CTTTC-TTCAT
1 TTGCATGAATT-GCCATTTGTTGCTTGCATTCAT
*
263505 TTGCATGAATTGGCATTTGTTGCTTGCATTTCAT
1 TTGCATGAATTGCCATTTGTTGCTTGCA-TTCAT
263539 TTGCATGAA
1 TTGCATGAA
263548 AGCATGCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 9 0.24
32 14 0.38
34 14 0.38
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (33 bp):
TTGCATGAATTGCCATTTGTTGCTTGCATTCAT
Found at i:263598 original size:12 final size:12
Alignment explanation
Indices: 263577--263609 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
263567 CATGCATGGA
*
263577 ATGAAGGTATGC
1 ATGAAAGTATGC
263589 ATGAAAGTATGC
1 ATGAAAGTATGC
263601 ATGAAAGTA
1 ATGAAAGTA
263610 AAAGCATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (12 bp):
ATGAAAGTATGC
Found at i:263860 original size:13 final size:13
Alignment explanation
Indices: 263842--263867 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
263832 TTTTGTGTTT
263842 ATTAATTTTTTTA
1 ATTAATTTTTTTA
263855 ATTAATTTTTTTA
1 ATTAATTTTTTTA
263868 TTTTTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTAATTTTTTTA
Found at i:265318 original size:80 final size:81
Alignment explanation
Indices: 265123--265319 Score: 256
Period size: 79 Copynumber: 2.5 Consensus size: 81
265113 AAAAGGGATT
* * * * * ** *
265123 GAAGTATCCTCTCAAAGATGGTGGAGTTGGAATATCCCTAGAGATGAAAATTTTGGTGTTTTGGA
1 GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCCTAAAGATGAAAAATTCAGTGTTTTGAA
* *
265188 AGTAAAAATGGGGTTA
66 AGTAAAAACGAGGTTA
* *
265204 GAA-TAT-CCCTCGGAGATAGTGGGGTTGGAATATCCCTAAAGATGAAAAATTCAGTGTTTTGAA
1 GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCCTAAAGATGAAAAATTCAGTGTTTTGAA
265267 AGTAAAAACGAGGTTA
66 AGTAAAAACGAGGTTA
*
265283 -AAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCC
1 GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCC
265320 CGAAAATAAC
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 2 0.02
79 64 0.65
80 30 0.30
81 3 0.03
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (81 bp):
GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCCTAAAGATGAAAAATTCAGTGTTTTGAA
AGTAAAAACGAGGTTA
Found at i:265341 original size:79 final size:79
Alignment explanation
Indices: 265123--265342 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 79
265113 AAAAGGGATT
* * * * * *
265123 GAAGTATCCTCTCAAAGATGGTGGAGTTGGAATATCCCTAGAGATGAAAATTTTGGTGTTTTGGA
1 GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCCTA-AAATGAAAA-TTTGATGTTTTGAA
* *
265188 AGTAAAAATGGGGTTA
64 AGTAAAAACGAGGTTA
* * * *
265204 GAA-TAT-CCCTCGGAGATAGTGGGGTTGGAATATCCCTAAAGATGAAAAATTCAGTGTTTTGAA
1 GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCCTAAA-ATGAAAATTTGA-TGTTTTGAA
265267 AGTAAAAACGAGGTTA
64 AGTAAAAACGAGGTTA
* *
265283 -AAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCGAAAAT-AACAATTTGATGTTTT
1 GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATAT-CCCTAAAATGAA-AATTTGATGTTTT
265343 CATAAATCGG
Statistics
Matches: 115, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
78 5 0.04
79 67 0.58
80 34 0.30
81 9 0.08
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (79 bp):
GAAGTATCCCCTCAGAGATGGTGGGGTTGGAATATCCCTAAAATGAAAATTTGATGTTTTGAAAG
TAAAAACGAGGTTA
Found at i:265800 original size:13 final size:13
Alignment explanation
Indices: 265782--265807 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
265772 TACAGCAAGT
265782 ATGTATCGATACA
1 ATGTATCGATACA
265795 ATGTATCGATACA
1 ATGTATCGATACA
265808 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:268067 original size:21 final size:21
Alignment explanation
Indices: 268034--268078 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
268024 TTGCAAGTTG
*
268034 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
268056 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
268076 AAA
1 AAA
268079 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:269902 original size:15 final size:15
Alignment explanation
Indices: 269882--269912 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
269872 TAAAAATGTC
*
269882 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
269897 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
269912 C
1 C
269913 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:271773 original size:8 final size:8
Alignment explanation
Indices: 271760--271791 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
271750 ATTTGATTAA
271760 ATTTTGTG
1 ATTTTGTG
271768 ATTTTGTG
1 ATTTTGTG
271776 ATTTTGTG
1 ATTTTGTG
271784 ATTTTGTG
1 ATTTTGTG
271792 TTGAATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:272011 original size:13 final size:13
Alignment explanation
Indices: 271993--272018 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
271983 ACATTTTTCT
271993 TTGTATCGATACA
1 TTGTATCGATACA
272006 TTGTATCGATACA
1 TTGTATCGATACA
272019 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:274590 original size:13 final size:13
Alignment explanation
Indices: 274572--274597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
274562 TACAGCAAGT
274572 ATGTATCGATACA
1 ATGTATCGATACA
274585 ATGTATCGATACA
1 ATGTATCGATACA
274598 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:284106 original size:15 final size:15
Alignment explanation
Indices: 284068--284106 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
284058 TAGTTTTCAA
284068 ATTTTCAAAAAAAAT
1 ATTTTCAAAAAAAAT
284083 ATTTT-AAAAAAAAT
1 ATTTTCAAAAAAAAT
284097 -TTCTTCAAAA
1 ATT-TTCAAAA
284107 TTCGTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.09
14 11 0.50
15 9 0.41
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (15 bp):
ATTTTCAAAAAAAAT
Found at i:284881 original size:45 final size:45
Alignment explanation
Indices: 284832--284942 Score: 152
Period size: 45 Copynumber: 2.5 Consensus size: 45
284822 GTTAAACGAA
* * * **
284832 AATGAAAAGAGTTTGACTAGGGCAAGAACCATCATGTCAAATCA-G
1 AATGAAAAGAGTTTGACCAAGGCAAAAACCATCACATCAAAT-AGG
*
284877 AATGAAAAGAGTTTAACCAAGGCAAAAACCATCACATCAAATAGG
1 AATGAAAAGAGTTTGACCAAGGCAAAAACCATCACATCAAATAGG
284922 AATGAAAAGAGTTTGACCAAG
1 AATGAAAAGAGTTTGACCAAG
284943 TGTAGTCAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 57 0.98
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (45 bp):
AATGAAAAGAGTTTGACCAAGGCAAAAACCATCACATCAAATAGG
Found at i:285103 original size:35 final size:35
Alignment explanation
Indices: 285003--285115 Score: 97
Period size: 35 Copynumber: 3.2 Consensus size: 35
284993 TTTAAACAAT
* * ***
285003 AATAAAAAGTA-TTTAACTAGGTACAGTTAAATGGG
1 AATAAAAAG-AGTTTAACAAGGTACAGTCAAACCAG
*
285038 AATAAAAAGAGTTTAACAAGGTATAGTCAAACCAG
1 AATAAAAAGAGTTTAACAAGGTACAGTCAAACCAG
* * *
285073 AATGAAAAGAGTTTGATCAA-GTACATTCAAA-CAGG
1 AATAAAAAGAGTTT-AACAAGGTACAGTCAAACCA-G
285108 AATAAAAA
1 AATAAAAA
285116 AAATATTTGA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
34 3 0.05
35 57 0.89
36 4 0.06
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (35 bp):
AATAAAAAGAGTTTAACAAGGTACAGTCAAACCAG
Found at i:285185 original size:117 final size:116
Alignment explanation
Indices: 285056--285266 Score: 266
Period size: 117 Copynumber: 1.8 Consensus size: 116
285046 GAGTTTAACA
* *
285056 AGGTATAGTCAAACCAG-AATGA-AAAGAGTTTGA-TCAAGTACATTCAAACAGGAATAAAAAAA
1 AGGTACAGTCAAA-CAGAAAT-ATAAAGAGTTTGACT-AAGTACAGTCAAACAGGAAT-AAAAAA
* *
285118 ATATTTGACCAGGGTGAGAACCATCATGTCAAACAATAATGAAAAAAGTTTGATC
62 ATATTTGACCAAGGCGAGAACCATCATGTCAAACAATAATGAAAAAAGTTTGATC
* * * * * * *
285173 AGGTACAGTCAAACAGAAATATATAGAGTTTGACTAGGTATAGTCAAATAGGAATGAAAAGATGT
1 AGGTACAGTCAAACAGAAATATAAAGAGTTTGACTAAGTACAGTCAAACAGGAATAAAAAAATAT
285238 TTGACCAAGGCGAGAACCATCATGTCAAA
66 TTGACCAAGGCGAGAACCATCATGTCAAA
285267 TAGGAAAGAA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
116 38 0.47
117 41 0.51
118 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (116 bp):
AGGTACAGTCAAACAGAAATATAAAGAGTTTGACTAAGTACAGTCAAACAGGAATAAAAAAATAT
TTGACCAAGGCGAGAACCATCATGTCAAACAATAATGAAAAAAGTTTGATC
Found at i:285201 original size:152 final size:154
Alignment explanation
Indices: 284913--285324 Score: 410
Period size: 152 Copynumber: 2.6 Consensus size: 154
284903 AACCATCACA
* ** *
284913 TCAAATAGGAATGAAAAGAGTTTGACCAAGTGTAGTCAAAC-GAGAAT-GAAAAGATATTTGACC
1 TCAAACAGGAATGAAAAGAGTTTGACCAAGTACATTCAAACAG-GAATAGAAAAGATATTTGACC
* * * * * ** *
284976 AGGGCGAGAACAATCACT-TTAAACAATAAT--AAAAAGTATTTAACTAGGTACAGTTAAATGGG
65 AGGGTGAGAACCATCA-TGTCAAACAATAATGAAAAAAGTATTGAACTAGGTACAGTCAAACAGA
285038 AATAAAAAGAGTTTAACAAGGTATAG
129 AATAAAAAGAGTTTAACAAGGTATAG
* * *
285064 TCAAACCA-GAATGAAAAGAGTTTGATCAAGTACATTCAAACAGGAATAAAAAAAATATTTGACC
1 TCAAA-CAGGAATGAAAAGAGTTTGACCAAGTACATTCAAACAGGAATAGAAAAGATATTTGACC
*
285128 AGGGTGAGAACCATCATGTCAAACAATAATGAAAAAAGT-TTGATC-AGGTACAGTCAAACAGAA
65 AGGGTGAGAACCATCATGTCAAACAATAATGAAAAAAGTATTGAACTAGGTACAGTCAAACAGAA
* * * *
285191 ATATATAGAGTTTGACTAGGTATAG
130 ATAAAAAGAGTTTAACAAGGTATAG
* * *
285216 TCAAATAGGAATGAAAAGATGTTTGACCAAGGCGAGAACCATCATGTCAAATAGGAA-AGAAAAG
1 TCAAACAGGAATGAAAAGA-GTTTGACC-A----AG---TA-CAT-TCAAACAGGAATAGAAAAG
* *
285280 ATGTTTGACCAGGATGAGAACCATCATGTCAAACAATAATGAAAA
55 ATATTTGACCAGGGTGAGAACCATCATGTCAAACAATAATGAAAA
285325 GATGTTTAAC
Statistics
Matches: 215, Mismatches: 28, Indels: 25
0.80 0.10 0.09
Matches are distributed among these distances:
151 40 0.19
152 92 0.43
153 11 0.05
154 8 0.04
158 2 0.01
161 1 0.00
162 51 0.24
163 10 0.05
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (154 bp):
TCAAACAGGAATGAAAAGAGTTTGACCAAGTACATTCAAACAGGAATAGAAAAGATATTTGACCA
GGGTGAGAACCATCATGTCAAACAATAATGAAAAAAGTATTGAACTAGGTACAGTCAAACAGAAA
TAAAAAGAGTTTAACAAGGTATAG
Found at i:285282 original size:46 final size:46
Alignment explanation
Indices: 285215--285475 Score: 217
Period size: 46 Copynumber: 5.7 Consensus size: 46
285205 ACTAGGTATA
*
285215 GTCAAATAGGAATGAAAAGATGTTTGACCAAGGCGAGAACCATCAT
1 GTCAAATAGGAAAGAAAAGATGTTTGACCAAGGCGAGAACCATCAT
*
285261 GTCAAATAGGAAAGAAAAGATGTTTGACC-AGGATGAGAACCATCAT
1 GTCAAATAGGAAAGAAAAGATGTTTGACCAAGG-CGAGAACCATCAT
* ** * * * * * * *
285307 GTCAAACAATAATGAAAAGATGTTTAACTAGGGTGAGAAACATCAC
1 GTCAAATAGGAAAGAAAAGATGTTTGACCAAGGCGAGAACCATCAT
** * * * * *
285353 GTCAAATAGG-AAGTAAAAAGACATTTAACTAGGGCAAGAACCATCAC
1 GTCAAATAGGAAAG--AAAAGATGTTTGACCAAGGCGAGAACCATCAT
* * * * * *
285400 GTCAAATAAGAAAAAAAAGATATTTGACCAGGGCAAAAACCATCAT
1 GTCAAATAGGAAAGAAAAGATGTTTGACCAAGGCGAGAACCATCAT
*
285446 GTCAAATTA-GATA-AAAAGA-GTTTGACCAAG
1 GTCAAA-TAGGAAAGAAAAGATGTTTGACCAAG
285476 TAAAATGAAG
Statistics
Matches: 179, Mismatches: 30, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
44 9 0.05
45 11 0.06
46 117 0.65
47 40 0.22
48 2 0.01
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (46 bp):
GTCAAATAGGAAAGAAAAGATGTTTGACCAAGGCGAGAACCATCAT
Found at i:285444 original size:93 final size:92
Alignment explanation
Indices: 285215--285452 Score: 237
Period size: 93 Copynumber: 2.6 Consensus size: 92
285205 ACTAGGTATA
* * * *
285215 GTCAAATAGGAATGAAAAGATGTTTGACCAAGGCGAGAACCATCATGTCAAATAGGAAAGAAAAG
1 GTCAAATAAGAATGAAAAGATGTTTGACCAGGGCAAAAACCATCATGTCAAATAGGAAAGAAAAG
** * ** *
285280 ATGTTTGACCAGGATGAGAACCATCAT
66 ACATTTAACCAGGACAAGAACCATCAC
* * * * * * *
285307 GTCAAACAATAATGAAAAGATGTTTAACTAGGGTGAGAAA-CATCACGTCAAATAGG-AAGTAAA
1 GTCAAATAAGAATGAAAAGATGTTTGACCAGGG-CAAAAACCATCATGTCAAATAGGAAAG--AA
* *
285370 AAGACATTTAACTAGGGCAAGAACCATCAC
63 AAGACATTTAACCAGGACAAGAACCATCAC
** *
285400 GTCAAATAAGAAAAAAAAGATATTTGACCAGGGCAAAAACCATCATGTCAAAT
1 GTCAAATAAGAATGAAAAGATGTTTGACCAGGGCAAAAACCATCATGTCAAAT
285453 TAGATAAAAA
Statistics
Matches: 113, Mismatches: 29, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
91 3 0.03
92 46 0.41
93 64 0.57
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (92 bp):
GTCAAATAAGAATGAAAAGATGTTTGACCAGGGCAAAAACCATCATGTCAAATAGGAAAGAAAAG
ACATTTAACCAGGACAAGAACCATCAC
Found at i:286055 original size:92 final size:92
Alignment explanation
Indices: 285932--286198 Score: 394
Period size: 92 Copynumber: 2.9 Consensus size: 92
285922 TGTGTGGTAG
* * * *
285932 GGATATCCTTGCCCCCAAA-AAATCAAGCTTTGTGATGCATCAATACCATCTAGTGGTTGGATAA
1 GGATATCCTTG-CCCCAAAGAAATTAGGCTTTGTGATGTATCAATACCATCTAGTGGTTGGATGA
*
285996 AGGGAATATGATTGGGAATGAGTA-GTA
65 AGGGGATATGATTGGGAATGAGTACGTA
* *
286023 GAGATATCCTTGCCCTAAAGAAATTAGGCTTTGTGATGTATCAATACCATCTAGTGGTTAGATGA
1 G-GATATCCTTGCCCCAAAGAAATTAGGCTTTGTGATGTATCAATACCATCTAGTGGTTGGATGA
* * *
286088 AGGGGATATAATTGGGAATGTGTACTTA
65 AGGGGATATGATTGGGAATGAGTACGTA
* *
286116 GGATATCCTTGCCCCAAAGAAACTAGGATTTGTGATGTATCAATACCATCTAGTGGTTGGATGAA
1 GGATATCCTTGCCCCAAAGAAATTAGGCTTTGTGATGTATCAATACCATCTAGTGGTTGGATGAA
286181 GGGGATATGATTGGGAAT
66 GGGGATATGATTGGGAAT
286199 TAGTGGTTTA
Statistics
Matches: 158, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
91 7 0.04
92 148 0.94
93 3 0.02
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (92 bp):
GGATATCCTTGCCCCAAAGAAATTAGGCTTTGTGATGTATCAATACCATCTAGTGGTTGGATGAA
GGGGATATGATTGGGAATGAGTACGTA
Found at i:295360 original size:19 final size:20
Alignment explanation
Indices: 295336--295388 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
295326 ATCAATACAC
*
295336 TGTATCGATACATGTTC-AT
1 TGTATCGATACATGCTCAAT
*
295355 TGTATCGATACATACTCAAT
1 TGTATCGATACATGCTCAAT
295375 TGTATCGATACATG
1 TGTATCGATACATG
295389 AAACTAGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATGCTCAAT
Found at i:295451 original size:13 final size:13
Alignment explanation
Indices: 295433--295462 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
295423 CGATACATGG
*
295433 TACATTGTATTGA
1 TACATTGTATCGA
295446 TACATTGTATCGA
1 TACATTGTATCGA
295459 TACA
1 TACA
295463 CAGTGAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:297074 original size:3 final size:3
Alignment explanation
Indices: 297059--297093 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
297049 AACCATCAAG
*
297059 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
297094 AGAAGATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:305182 original size:19 final size:21
Alignment explanation
Indices: 305139--305190 Score: 90
Period size: 19 Copynumber: 2.6 Consensus size: 21
305129 TACAAGCCAA
305139 TGTATCGATACATATTTTATG
1 TGTATCGATACATATTTTATG
305160 TGTATCGATACATA-TTT-TG
1 TGTATCGATACATATTTTATG
305179 TGTATCGATACA
1 TGTATCGATACA
305191 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 14 0.45
20 3 0.10
21 14 0.45
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATATTTTATG
Found at i:307733 original size:13 final size:13
Alignment explanation
Indices: 307717--307752 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
307707 AATCCCCTTA
307717 TATCGATACAGTG
1 TATCGATACAGTG
*
307730 TATCGATACATTG
1 TATCGATACAGTG
307743 TATCGATACA
1 TATCGATACA
307753 AAGAAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:309852 original size:15 final size:15
Alignment explanation
Indices: 309832--309862 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
309822 ATTTTGTTTG
*
309832 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
309847 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
309862 G
1 G
309863 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:311692 original size:21 final size:21
Alignment explanation
Indices: 311663--311707 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
311653 AAGTTTTTAT
*
311663 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
311683 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
311705 TTT
1 TTT
311708 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:313947 original size:34 final size:34
Alignment explanation
Indices: 313903--314001 Score: 166
Period size: 34 Copynumber: 3.0 Consensus size: 34
313893 TACAAGCCAA
313903 TGTATCGATACATATTTTATGTGTATCGATACAT
1 TGTATCGATACATATTTTATGTGTATCGATACAT
*
313937 TGTATTGATACATATTTTATGTGTATCGATACAT
1 TGTATCGATACATATTTTATGTGTATCGATACAT
*
313971 TGTATCGATACATA-TTT-TGTGTATCAATACA
1 TGTATCGATACATATTTTATGTGTATCGATACA
314002 AGTTTGGCTA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 13 0.21
33 3 0.05
34 46 0.74
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.44
Consensus pattern (34 bp):
TGTATCGATACATATTTTATGTGTATCGATACAT
Found at i:313995 original size:19 final size:19
Alignment explanation
Indices: 313903--314001 Score: 60
Period size: 13 Copynumber: 5.6 Consensus size: 19
313893 TACAAGCCAA
313903 TGTATCGATACATATTTTATG
1 TGTATCGATACATA-TTT-TG
313924 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
*
313937 TGTATTGATACATATTTTATG
1 TGTATCGATACATA-TTT-TG
313958 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
313971 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
*
313990 TGTATCAATACA
1 TGTATCGATACA
314002 AGTTTGGCTA
Statistics
Matches: 61, Mismatches: 3, Indels: 30
0.65 0.03 0.32
Matches are distributed among these distances:
13 21 0.34
14 2 0.03
15 2 0.03
18 1 0.02
19 13 0.21
20 1 0.02
21 21 0.34
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:315407 original size:20 final size:20
Alignment explanation
Indices: 315382--315433 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
315372 GTTAGGCTCA
* * *
315382 ATGTATTGATACATTTTACC
1 ATGTATCGATACAATTCACC
*
315402 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCACC
315422 ATGTATCGATAC
1 ATGTATCGATAC
315434 TTAGTGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:315519 original size:13 final size:13
Alignment explanation
Indices: 315501--315525 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
315491 TACTATGAAC
315501 ATGTATCGATACA
1 ATGTATCGATACA
315514 ATGTATCGATAC
1 ATGTATCGATAC
315526 TAAGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:315543 original size:33 final size:32
Alignment explanation
Indices: 315483--315546 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
315473 CTTCTCAAGG
*
315483 TGTATCAATACTATGAACATGTATCGATACAA
1 TGTATCAATACTAAGAACATGTATCGATACAA
* *
315515 TGTATCGATACTAAGCAATATGTATCGATACA
1 TGTATCAATACTAAG-AACATGTATCGATACA
315547 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (32 bp):
TGTATCAATACTAAGAACATGTATCGATACAA
Found at i:317225 original size:51 final size:50
Alignment explanation
Indices: 317167--317303 Score: 152
Period size: 51 Copynumber: 2.7 Consensus size: 50
317157 AACAGGGTTG
317167 GAGTATCCCCGATTGTAAAAAATTGATGTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGT-AAAAATTGATGTTTTGGAAATAAAATCGGAGTTA
* ** * * * * *
317218 GAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGTCGGGGTTG
1 GAGTATCCCCGATTGT-AAAAATTGATGTTTTGGAAATAAAATCGGAGTTA
* *
317269 GAGTATCCCC-AATG-AAAAATTGATGTTTTGAAAAT
1 GAGTATCCCCGATTGTAAAAATTGATGTTTTGGAAAT
317304 GGAACCGGGA
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
48 15 0.21
50 3 0.04
51 52 0.74
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (50 bp):
GAGTATCCCCGATTGTAAAAATTGATGTTTTGGAAATAAAATCGGAGTTA
Found at i:317229 original size:79 final size:79
Alignment explanation
Indices: 316916--317230 Score: 314
Period size: 79 Copynumber: 4.0 Consensus size: 79
316906 TTTTAGAGAT
* * ** * * *
316916 AATAACGGGGCTGGAGTATCCCCGATTATGGAAAATCGGTGTTCTAGAAGTAAAAATCGGGGTTG
1 AATAACAGGGTTGGAGTATCCCCGATTATAAAAAATCGATGTTTTAGAAAT-AAAATCGGGGTTG
316981 GAGTAT-CCC-ATCAGA
65 GAGTATCCCCGAT--GA
* * * * *
316996 AATAACAGGGTTGGAGTATCCCTGATTATAGAAAATTGGTGTTTTCA-AAATAAAATCGGGATTG
1 AATAACAGGGTTGGAGTATCCCCGATTATAAAAAATCGATGTTTT-AGAAATAAAATCGGGGTTG
*
317060 GAGTATCCCCG-CGAA
65 GAGTATCCCCGATG-A
** * * * * * * *
317075 AATAATGGGGTTAGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGTCGGGGTTGG
1 AATAACAGGGTTGGAGTATCCCCGATTATAAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGG
317140 AGTATCCCCGATGA
66 AGTATCCCCGATGA
* * * * *
317154 AATAACAGGGTTGGAGTATCCCCGATTGTAAAAAATTGATGTTTTGGAAATAAAATCGGAGTTAG
1 AATAACAGGGTTGGAGTATCCCCGATTATAAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGG
317219 AGTATCCCCGAT
66 AGTATCCCCGAT
317231 TGTGAGAAAT
Statistics
Matches: 193, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
78 2 0.01
79 144 0.75
80 46 0.24
81 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (79 bp):
AATAACAGGGTTGGAGTATCCCCGATTATAAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGG
AGTATCCCCGATGA
Found at i:319605 original size:20 final size:19
Alignment explanation
Indices: 319580--319653 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
319570 AAAATGCCTG
* *
319580 AATGTATTGATACATTGTAA
1 AATGTATCGATACAATG-AA
*
319600 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
319620 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
319640 AATGTATCGATACA
1 AATGTATCGATACA
319654 TTTGGGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:319709 original size:20 final size:20
Alignment explanation
Indices: 319680--319736 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
319670 ATGTATCGAT
* *
319680 ACAATATATCGATATAATGA
1 ACAATGTATCGATACAATGA
319700 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
319720 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
319737 ATTGTGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.26
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:320690 original size:60 final size:60
Alignment explanation
Indices: 320603--320831 Score: 247
Period size: 61 Copynumber: 3.9 Consensus size: 60
320593 ATAAAGTGCA
** *
320603 TCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGT-GGCTTTGAAAAGAAAAGGTG
1 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * * * * *
320663 TCCTGCTCCTTGAGGACTGGAAGGTGCCACCAACTTATGTGGGCTTTGCAAAGAGAAA-GCA
1 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGA-AAAGGCG
* * *
320724 TCCTACTCTTTAAGGACTGGAAAATGCCACCGACTTGTGTGGGCTTT----G-AAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
320779 TCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 TCCTACTCTTTGAGGACTGG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
320832 GCATCCTGCT
Statistics
Matches: 139, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
54 3 0.02
55 19 0.14
56 26 0.19
60 35 0.25
61 53 0.38
62 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (60 bp):
TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:320760 original size:121 final size:117
Alignment explanation
Indices: 320600--320826 Score: 298
Period size: 121 Copynumber: 1.9 Consensus size: 117
320590 AAAATAAAGT
* *
320600 GCATCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGT-GGCTTTGAAAAGAAAAGGTGT
1 GCATCCTACTCTTTAAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGT
* *
320664 CCTGCTCCTTGAGGACTGG-AAGGTGCCACCAACTTATGTGGGCTTTGCAAAGAGAAA
60 CCTGCTCCTTGAAGACTGGAAAAGTGCCACCAACTTATGTGGGCTTTGCAAAGAGAAA
* *
320721 GCATCCTACTCTTTAAGGACTGGAAAA-TGCCACCGACTTGTGTGGGCTTTGAAAGGCGTCCTGC
1 GCATCCTACTCTTTAAGGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
* *
320785 TCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTT
65 TCCTTGAAGACTGGAAAAGTGCCACCAACTTATGTGGGCTTT
320827 AAAAGGCATC
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
116 24 0.25
117 26 0.27
121 35 0.37
122 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (117 bp):
GCATCCTACTCTTTAAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
CCTTGAAGACTGGAAAAGTGCCACCAACTTATGTGGGCTTTGCAAAGAGAAA
Found at i:320800 original size:55 final size:56
Alignment explanation
Indices: 320595--320852 Score: 229
Period size: 56 Copynumber: 4.4 Consensus size: 56
320585 AGAAGAAAAT
* * *
320595 AAAGTGCATCCTACTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGT-GGCTTTGAAAAGA
1 AAAG-GCATCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTT------A
** * * * *
320656 AAAGGTGTCCTGCTCCTTGAGGACTGG-AAGGTGCCACCAACTTATGTGGGCTTTGCA
1 AAAGGCATCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTT--A
* * *
320713 AAGAGAAAGCATCCTACTCTTT-AAGGACTGGAAAA-TGCCACCGACTTGTGTGGGCTTTG
1 AA-AG---GCATCCTGCTCTTTGAA-GACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTA
*
320772 AAAGGCGTCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGCATCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTA
*
320828 AAAGGCATCCTGCTCTTTGAGGACT
1 AAAGGCATCCTGCTCTTTGAAGACT
320853 AAAGGATGAA
Statistics
Matches: 163, Mismatches: 24, Indels: 25
0.77 0.11 0.12
Matches are distributed among these distances:
55 22 0.13
56 47 0.29
57 3 0.02
58 4 0.02
59 2 0.01
60 36 0.22
61 47 0.29
62 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (56 bp):
AAAGGCATCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTA
Found at i:320820 original size:56 final size:55
Alignment explanation
Indices: 320595--320852 Score: 216
Period size: 61 Copynumber: 4.5 Consensus size: 55
320585 AGAAGAAAAT
* * *
320595 AAAGTGCATCCTACTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGT-GGCTTTGAAAAGA
1 AAAG-GCATCCTGCTCTTTGAAGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT------A
** * * ** *
320656 AAAGGTGTCCTGCTCCTTGAGGACTGGAAGGTGCCACCAACTTATGTGGGCTTTGCA
1 AAAGGCATCCTGCTCTTTGAAGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--A
* * *
320713 AAGAGAAAGCATCCTACTCTTT-AAGGACTGGAAAATGCCACCGACTTGTGTGGGCTTTG
1 AA-AG---GCATCCTGCTCTTTGAA-GACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
*
320772 AAAGGCGTCCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGCATCCTGCTCTTTGAAGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTA
*
320828 AAAGGCATCCTGCTCTTTGAGGACT
1 AAAGGCATCCTGCTCTTTGAAGACT
320853 AAAGGATGAA
Statistics
Matches: 162, Mismatches: 26, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
55 22 0.14
56 47 0.29
57 3 0.02
58 4 0.02
59 2 0.01
60 33 0.20
61 51 0.31
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (55 bp):
AAAGGCATCCTGCTCTTTGAAGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:320967 original size:55 final size:55
Alignment explanation
Indices: 320871--321125 Score: 294
Period size: 55 Copynumber: 4.5 Consensus size: 55
320861 AAAGGAGAGA
* ** *
320871 GCATCCTACTCTTTGAGGACTGGGAAGTGCCACCAATTTGTGTGGGCTTTAAAAG
1 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * * *
320926 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACAAACTTGTGTGGGCTTTGAAAG
1 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
320981 GCGTCCTACTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAG
1 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAG
* * * *
321042 GCATCCTGCTTTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGCCTTTAAAAG
1 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
321097 GCATCCTGCTCTTTGAGGACTAAAAAGTG
1 GCATCCTGCTCTTTGAGGACTGAAAAGTG
321126 AAAGGAAAAA
Statistics
Matches: 168, Mismatches: 26, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
55 122 0.73
61 46 0.27
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (55 bp):
GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:321007 original size:150 final size:150
Alignment explanation
Indices: 320715--321007 Score: 444
Period size: 150 Copynumber: 2.0 Consensus size: 150
320705 GCTTTGCAAA
* *
320715 GAGAAAGCATCCTACTCTTTAAGGACTGGAAAATGCCACCGACTTGTGTGGGCTTTGAAAGGCGT
1 GAGAAAGCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
* * * *
320780 CCTGCTCTTTGAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
66 CCTGCTCTTTGAAGACTGAAAAAATGCCACAAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTT
320845 TGAGGACTAAAGGATGAAAG
131 TGAGGACTAAAGGATGAAAG
* * * * *
320865 GAGAGAGCATCCTACTCTTTGAGGACTGGGAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCGT
1 GAGAAAGCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
* * *
320930 CCTGCTCTTTGAGGACT-AAAAAATGCCACAAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTT
66 CCTGCTCTTTGAAGACTGAAAAAATGCCACAAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTT
320994 TGAGGACTGAAAGG
131 TGAGGACT-AAAGG
321008 TGCCACTAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
149 49 0.38
150 79 0.62
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (150 bp):
GAGAAAGCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
CCTGCTCTTTGAAGACTGAAAAAATGCCACAAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTT
TGAGGACTAAAGGATGAAAG
Found at i:321080 original size:116 final size:110
Alignment explanation
Indices: 320871--321117 Score: 298
Period size: 116 Copynumber: 2.2 Consensus size: 110
320861 AAAGGAGAGA
* * *
320871 GCATCCTACTCTTTGAGGACTGGGAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCGTCCTGCT
1 GCATCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
* * *
320936 CTTTGAGGACTAAAAAATGCCACAAACTTGTGTGGGCTTTGAAAG
66 CTTTGAGGACTAAAAAATGCCACAAACTTATGTGGCCTTTAAAAG
* *
320981 GCGTCCTACTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
1 GCATCCTACTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT------AAAAGGCA
* * * * *
321045 TCCTGCTTTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGCCTTTAAAAG
59 TCCTGCTCTTTGAGGACTAAAAAATGCCACAAACTTATGTGGCCTTTAAAAG
*
321097 GCATCCTGCTCTTTGAGGACT
1 GCATCCTACTCTTTGAGGACT
321118 AAAAAGTGAA
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
109 3 0.03
110 42 0.37
116 70 0.61
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (110 bp):
GCATCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
CTTTGAGGACTAAAAAATGCCACAAACTTATGTGGCCTTTAAAAG
Found at i:322105 original size:8 final size:8
Alignment explanation
Indices: 322092--322141 Score: 55
Period size: 8 Copynumber: 5.9 Consensus size: 8
322082 AGCAGGTTCT
322092 TTTTTTTC
1 TTTTTTTC
322100 TTTTTTTC
1 TTTTTTTC
*
322108 TTTGTTTTG
1 TTT-TTTTC
*
322117 TTTTTTTG
1 TTTTTTTC
322125 TTTTTTCTC
1 TTTTTT-TC
322134 TCTTTTTT
1 T-TTTTTT
322142 TTTAAAGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
8 22 0.59
9 10 0.27
10 5 0.14
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (8 bp):
TTTTTTTC
Found at i:322108 original size:17 final size:17
Alignment explanation
Indices: 322088--322142 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
322078 CTCAAGCAGG
322088 TTCTTTTTTTTCTTTTT
1 TTCTTTTTTTTCTTTTT
* *
322105 TTCTTTGTTTTGTTTTT
1 TTCTTTTTTTTCTTTTT
*
322122 TTGTTTTTTCTCTCTTTTT
1 TTCTTTTTT-T-TCTTTTT
322141 TT
1 TT
322143 TTAAAGAAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 22 0.71
18 1 0.03
19 8 0.26
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (17 bp):
TTCTTTTTTTTCTTTTT
Found at i:322139 original size:24 final size:24
Alignment explanation
Indices: 322091--322144 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
322081 AAGCAGGTTC
* * *
322091 TTTTTTTTCTTTTTTTCTTTGTTT
1 TTTTTTTTCGTTTTTTCTCTCTTT
322115 TGTTTTTTT-GTTTTTTCTCTCTTT
1 T-TTTTTTTCGTTTTTTCTCTCTTT
322139 TTTTTT
1 TTTTTT
322145 AAAGAAGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.19
24 14 0.54
25 7 0.27
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (24 bp):
TTTTTTTTCGTTTTTTCTCTCTTT
Found at i:326701 original size:51 final size:51
Alignment explanation
Indices: 326624--326788 Score: 172
Period size: 51 Copynumber: 3.2 Consensus size: 51
326614 TTTCATCTCG
* * * * * **
326624 GGGATACTCTAA-TCTCGGTTTCATTTCCAAAATATCAATTTTTCTTAATCA
1 GGGATACTCCAACTC-CGATTTTATTTCTAAAACATCAATTTTTCACAATCA
* * ** *
326675 GGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCACAATCG
1 GGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCACAATCA
* *
326726 GGGATACTCCAACTCCGATTTTATTTTTAAAACACCAATTTTTCACAAT-A
1 GGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCACAATCA
326776 GGGGATACTCCAA
1 -GGGATACTCCAA
326789 TCCTATTATT
Statistics
Matches: 93, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
51 91 0.98
52 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (51 bp):
GGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCACAATCA
Found at i:326849 original size:28 final size:28
Alignment explanation
Indices: 326773--326849 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
326763 ATTTTTCACA
* **
326773 ATAGGGGATACTCCAATCCTATTATTTC
1 ATAGGGGATACTCCAACCCCGTTATTTC
*
326801 ATTGGGGATACTCCAACCCCGTTATTTC
1 ATAGGGGATACTCCAACCCCGTTATTTC
326829 -TGAGGGGATACTCCAACCCCG
1 AT-AGGGGATACTCCAACCCCG
326850 GCTTTATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (28 bp):
ATAGGGGATACTCCAACCCCGTTATTTC
Found at i:326921 original size:110 final size:109
Alignment explanation
Indices: 326766--327009 Score: 343
Period size: 110 Copynumber: 2.2 Consensus size: 109
326756 AACACCAATT
* * * * *
326766 TTTCACAATAGGGGATACTCCAATCCTATTATTTCATTGGGGATACTCCAACCCCGTTA-TTTCT
1 TTTCACAATCGGGGATACTCCAACCCCATTATTTCATCGGAGATACTCCAACCCCGTTATTTTC-
326830 GAGGGGATACTCCAACCCCGGCTTTATATAT-AAAAATATTGATTTC
65 GAGGGGATACTCCAACCCCGGCTTTAT-T-TCAAAAATATTGATTTC
* *
326876 TTTCATAATCGGGGATACTCCAACCCCATTATTTCATCGGAGATACTCCAATCCCGTTATTTTCG
1 TTTCACAATCGGGGATACTCCAACCCCATTATTTCATCGGAGATACTCCAACCCCGTTATTTTCG
* *
326941 AGGGGATACTCCAACCTCGGCTTTATTTCCAAAATATTGATTTC
66 AGGGGATACTCCAACCCCGGCTTTATTTCAAAAATATTGATTTC
*
326985 --TCACAATCGGGGATACTTCAACCCC
1 TTTCACAATCGGGGATACTCCAACCCC
327010 GGCCTTATTT
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
107 23 0.19
108 1 0.01
109 15 0.12
110 78 0.64
111 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (109 bp):
TTTCACAATCGGGGATACTCCAACCCCATTATTTCATCGGAGATACTCCAACCCCGTTATTTTCG
AGGGGATACTCCAACCCCGGCTTTATTTCAAAAATATTGATTTC
Found at i:326948 original size:28 final size:27
Alignment explanation
Indices: 326885--326956 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
326875 CTTTCATAAT
326885 CGGGGATACTCCAACCCCATTATTTCA
1 CGGGGATACTCCAACCCCATTATTTCA
* * *
326912 TCGGAGATACTCCAATCCCGTTATTTTCGA
1 -CGGGGATACTCCAACCCCATTA-TTTC-A
326942 -GGGGATACTCCAACC
1 CGGGGATACTCCAACC
326957 TCGGCTTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (27 bp):
CGGGGATACTCCAACCCCATTATTTCA
Found at i:333364 original size:61 final size:60
Alignment explanation
Indices: 333243--333812 Score: 725
Period size: 61 Copynumber: 9.3 Consensus size: 60
333233 TAGCCCTTCC
* *
333243 AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAACTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT
* *
333304 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * * **
333365 AGTCCTCAAAAAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * *
333426 AGTCCTCAAAGAGGAGGACGCATTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTT
1 AGTCCTCAAAGAGCAGGACGC-CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
333487 AGTCATCAAAGAACAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTT-T
* *
333549 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * * *
333608 CCAGTCCTCAAAGAGCATGATG-C-TTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCAGCTTCC
1 --AGTCCTCAAAGAGCAGGACGCCTTTTC-CTTT-TAAAGCCCACACAAGTTGGTGGCACCTT-T
* * **
333671 AGTCCTTAAAGAGCAGGATGCC-TTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA--CCTTT
333733 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-T
333794 AGTCCTCAAAGAGCAGGAC
1 AGTCCTCAAAGAGCAGGAC
333813 TGCTCTCTCC
Statistics
Matches: 451, Mismatches: 42, Indels: 32
0.86 0.08 0.06
Matches are distributed among these distances:
59 5 0.01
60 64 0.14
61 238 0.53
62 133 0.29
63 11 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:333709 original size:184 final size:181
Alignment explanation
Indices: 333237--333812 Score: 848
Period size: 184 Copynumber: 3.1 Consensus size: 181
333227 CTCTTTTAGC
*
333237 CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAACTTGGTGGCACCT
1 CCTTCCAGTCCTCAAAGAGCAGGACG-CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-CT
* **
333302 TTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCACCCTTTAG
64 TTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAG
* * *
333367 TCCTCAAAAAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
129 TCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
333420 CCCTCCAGTCCTCAAAGAGGAGGACGCATTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTT
1 CCTTCCAGTCCTCAAAGAGCAGGACGC-TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC-T
* * *
333485 TTAGTCATCAAAGAACAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTA
64 TTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT-TA
333550 GTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
128 GTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * * * *
333604 TTTTCCAGTCCTCAAAGAGCATGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCAGCTT
1 CCTTCCAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-CTT
* * *
333669 CCAGTCCTTAAAGAGCAGGATGCC-TTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTT
65 -TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTTT
*
333733 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
127 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
333788 CCTTCTAGTCCTCAAAGAGCAGGAC
1 CCTTCCAGTCCTCAAAGAGCAGGAC
333813 TGCTCTCTCC
Statistics
Matches: 352, Mismatches: 34, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
182 2 0.01
183 155 0.44
184 191 0.54
185 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (181 bp):
CCTTCCAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTT
AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTC
CTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:333906 original size:94 final size:98
Alignment explanation
Indices: 333729--333906 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 98
333719 GGTGGCATTT
333729 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
1 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCC---TAAAGCCCACACAAGTTGGTGGCACCTTCT
* *
333794 AGTCCTCAAAGAGCAGGACTGCTCTCTCCTTTCACC
63 AATCCTCAAAGAGAAGGACTGCTCTCTCCTTTCACC
333830 TTTT-GTCCTCAAAGAGCAGGACGCC-TTT-C-AAAGCCCACACAAGTTGGTGGCACCTT-TCAA
1 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTAAAGCCCACACAAGTTGGTGGCACCTTCT-AA
333890 TCCTCAAAGAGAAGGAC
65 TCCTCAAAGAGAAGGAC
333907 GCCTTTCAAA
Statistics
Matches: 74, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
93 1 0.01
94 44 0.59
98 1 0.01
99 3 0.04
100 21 0.28
101 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (98 bp):
TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTAAAGCCCACACAAGTTGGTGGCACCTTCTAAT
CCTCAAAGAGAAGGACTGCTCTCTCCTTTCACC
Found at i:334114 original size:60 final size:60
Alignment explanation
Indices: 333826--334446 Score: 723
Period size: 60 Copynumber: 10.4 Consensus size: 60
333816 TCTCTCCTTT
*
333826 CACCTTTTGTCCTCAAAGAGCAGGACGCC-TTT-C----AAAGCCCACACAAGTTGGTGG
1 CACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
333880 CACCTTTCAATCCTCAAAGAGAAGGACGCC-TTT-C----AAAGTCCACACAAGTTGGTGG
1 CACCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* *
333935 CACTCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTT-GTGG
1 CAC-C-TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGG
** * *
333997 CACCCTCCAGTCCTCAAAGAGCATGACGCCTTTTTTCATTTTAAAGCCCACACAAGTTGGTGG
1 CA-CCTTTAGTCCTCAAAGAGCAGGACGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* *
334060 CACCTTTAGTCCTCAAAAAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTAG
1 CACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
334120 CACCCTTTAGTCCTCAAAGAGTAGGACGCCTTCTCC-TTCAAAGCCCACACGAGTTGGTGG
1 CA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
** * * ** *
334180 CACCCTCCAGTCCTTAAAGAGTAGGATACCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGG
1 CA-CCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
334242 CACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCTCACAAGTTGGTTG
1 CACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
334302 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCC-TTCAAAGCCCACACGAGTTGGTGG
1 CA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
334362 CACCCTCTAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTTTAAAGCCCACATAAGTTGGTGG
1 CA-CCTTTAGTCCTCAAAGAGCAGGAC-GCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGG
334425 CACCTTTAGTCCTCAAAGAGCA
1 CACCTTTAGTCCTCAAAGAGCA
334447 AGACACACTT
Statistics
Matches: 490, Mismatches: 56, Indels: 34
0.84 0.10 0.06
Matches are distributed among these distances:
54 7 0.01
55 46 0.09
56 21 0.04
57 6 0.01
58 1 0.00
60 153 0.31
61 112 0.23
62 92 0.19
63 52 0.11
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (60 bp):
CACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:334224 original size:182 final size:182
Alignment explanation
Indices: 333859--334446 Score: 893
Period size: 182 Copynumber: 3.2 Consensus size: 182
333849 GACGCCTTTC
* *
333859 AAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGAAGGACGCC-TTT-C----AAAG
1 AAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAG
* * * * *
333918 TCCACACAAGTTGGTGGCACTCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
65 CCCACACAAGTTGGTAGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCC-TTCTC-CTTCAAAGCC
* * *
333983 CACACGAGTT-GTGGCACCCTCCAGTCCTCAAAGAGCATGACGCCTTTTTTCATTTT
127 CACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCC-TTTTTCTTTTT
*
334039 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAAAGCAGGACGCCTTTTCCTTTTAAAGC
1 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGC
*
334104 CCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGTAGGACGCCTTCTCCTTCAAAGCCCACA
66 CCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACA
* * *
334169 CGAGTTGGTGGCACCCTCCAGTCCTTAAAGAGTAGGATACCTTTTTCTTTTT
131 CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTT
*
334221 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGC
1 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGC
* *
334286 CCTCACAAGTTGGTTGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACA
66 CCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACA
*
334351 CGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGACTGCCTTTTTCTTTTT
131 CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGA-TGCCTTTTTCTTTTT
*
334404 AAAGCCCACATAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCA
1 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCA
334447 AGACACACTT
Statistics
Matches: 375, Mismatches: 25, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
179 19 0.05
180 31 0.08
181 1 0.00
182 188 0.50
183 89 0.24
184 25 0.07
185 22 0.06
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (182 bp):
AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGC
CCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACA
CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTT
Found at i:334495 original size:43 final size:44
Alignment explanation
Indices: 334433--334774 Score: 272
Period size: 43 Copynumber: 7.8 Consensus size: 44
334423 GGCACCTTTA
* * *
334433 GTCCTCAAAGAGCAAGACACACTTTTTTTTCCTCTTC-CCTCTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTCTT
* * * *
334476 GTCCTAAAAGAGCAGGACACACTTCA-TTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTT-TTCT-CCTCTT
* * *
334521 ATCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTCTCCTC-T
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTCTT
* *
334564 GTCCTTAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCT-TT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTCTT
* * * *
334607 GTCCTCAAAGAGCAGGACAC-GTTCCATTCTTTTCTTTTCTCCTTTT
1 GTCCTCAAAGAGCAGGACACACTT-TA-T-TTTCCTTTTCTCCTCTT
* * * * * * * *
334653 GCCCTCCAAGAGCATGACGCGCTTCATTTCTTCTTTTC-CCTTCTA
1 GTCCTCAAAGAGCAGGACACACTTTATTT-TCCTTTTCTCC-TCTT
* * *
334698 GTTCTCAAAGAGTAGGACGCACTTTATTTTCCTTTT-TCCT-TT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTCTT
* * *
334740 ATCCTTAAAGAGCA-GACGCA-TTTCATTTTCCTTTT
1 GTCCTCAAAGAGCAGGACACACTTT-ATTTTCCTTTT
334775 TTTCTTTGTC
Statistics
Matches: 243, Mismatches: 42, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
40 3 0.01
41 17 0.07
42 19 0.08
43 84 0.35
44 16 0.07
45 75 0.31
46 27 0.11
47 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.12, T:0.40
Consensus pattern (44 bp):
GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTCTT
Found at i:334778 original size:88 final size:88
Alignment explanation
Indices: 334427--334778 Score: 346
Period size: 88 Copynumber: 4.0 Consensus size: 88
334417 GTTGGTGGCA
* * * * *
334427 CCTTTAGTCCTCAAAGAGCAAGACACACTTTTTTTTCCTCTTC-CCTCTTGTCCTAAAAGAGCAG
1 CCTTTAGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCT-TTGTCCTTAAAGAGCAG
*
334491 GACACACTTCATTTCCTTCTTTTC
65 GACGCACTTCATTTCCTTCTTTTC
* *
334515 CCTTTTA-TCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTCTCCTCTGTCCTTAAAGAGCAG
1 CC-TTTAGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAG
* *
334579 GACGCACTTTATTT--TCCTTTTC
65 GACGCACTTCATTTCCTTCTTTTC
* * * **
334601 TCCTTT-GTCCTCAAAGAGCAGGA--CACGTTCCATTCTTTTCTTTTCTCCTTTTGCCCTCCAAG
1 -CCTTTAGTCCTCAAAGAGCAGGACGCAC-TT-TA-T-TTTCCTTTTCTCC-TTTGTCCTTAAAG
* *
334663 AGCATGACGCGCTTCATTT-CTTCTTTTC
60 AGCAGGACGCACTTCATTTCCTTCTTTTC
* * *
334691 CCTTCTAGTTCTCAAAGAGTAGGACGCACTTTATTTTCCTTTT-TCCTTTATCCTTAAAGAGCA-
1 CCTT-TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAG
* *
334754 GACGCATTTCATTTTCCTTTTTTTC
65 GACGCACTTCA-TTTCCTTCTTTTC
334779 TTTGTCCTTG
Statistics
Matches: 216, Mismatches: 32, Indels: 32
0.77 0.11 0.11
Matches are distributed among these distances:
84 3 0.01
85 2 0.01
86 35 0.16
87 19 0.09
88 83 0.38
89 44 0.20
90 9 0.04
91 16 0.07
92 2 0.01
93 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.12, T:0.40
Consensus pattern (88 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGG
ACGCACTTCATTTCCTTCTTTTC
Found at i:335533 original size:20 final size:20
Alignment explanation
Indices: 335508--335664 Score: 109
Period size: 20 Copynumber: 7.8 Consensus size: 20
335498 TTTTCACAAT
335508 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
335528 TTGTATCGATACATTCTGGGTTTACCCA
1 TTGTATCGATACA-T-T--G-TT---CA
*
335556 GATGTATCGATACATT-TTGCA
1 -TTGTATCGATACATTGTT-CA
*
335577 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
335597 TTGTATCGAT--A-----CA
1 TTGTATCGATACATTGTTCA
335610 TTGTATCGATACATTGCTT-A
1 TTGTATCGATACATTG-TTCA
335630 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
335650 ATGTATCGATACATT
1 TTGTATCGATACATT
335665 TAGGCATTTT
Statistics
Matches: 112, Mismatches: 5, Indels: 40
0.71 0.03 0.25
Matches are distributed among these distances:
13 12 0.11
15 1 0.01
18 3 0.03
20 70 0.62
21 4 0.04
22 1 0.01
23 2 0.02
24 1 0.01
25 2 0.02
27 1 0.01
28 3 0.03
29 12 0.11
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:335611 original size:13 final size:13
Alignment explanation
Indices: 335595--335625 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
335585 ATACATTGCT
335595 CATTGTATCGATA
1 CATTGTATCGATA
335608 CATTGTATCGATA
1 CATTGTATCGATA
335621 CATTG
1 CATTG
335626 CTTATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:335617 original size:33 final size:33
Alignment explanation
Indices: 335575--335644 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
335565 ATACATTTTG
335575 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
*
335608 CATTGTATCGATACATTGCTTATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
335641 CATT
1 CATT
335645 TTACAATGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:338116 original size:51 final size:51
Alignment explanation
Indices: 337963--338128 Score: 156
Period size: 51 Copynumber: 3.3 Consensus size: 51
337953 TTTTCATCTC
* * * * *
337963 GGGGATACTCCAATCTCAG-TTTCATTTCCAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAA-CTCCGATTTTATTTTCAAAACATCAATTTTTCATAATT
** * * * ** *
338014 GAAGATACTCAAACTCCGATTTTA-TTTCTAAAGCATCGATTTACCGTAATT
1 GGGGATACTCCAACTCCGATTTTATTTTC-AAAACATCAATTTTTCATAATT
* *
338065 GGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTTCACAATT
1 GGGGATACTCCAACTCCGATTTTATTTTCAAAACATCAATTTTTCATAATT
*
338116 GGGGATAGTCCAA
1 GGGGATACTCCAA
338129 TCCCGTTATT
Statistics
Matches: 89, Mismatches: 23, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
50 7 0.08
51 78 0.88
52 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTTATTTTCAAAACATCAATTTTTCATAATT
Found at i:338145 original size:28 final size:28
Alignment explanation
Indices: 338113--338189 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
338103 ATTTTTCACA
* *
338113 ATTGGGGATAGTCCAATCCCGTTATTTC
1 ATTGGGGATACTCCAACCCCGTTATTTC
338141 ATTGGGGATACTCCAACCCCGTTATTTCC
1 ATTGGGGATACTCCAACCCCGTTATTT-C
* *
338170 A-AGGGAATACTCCAACCCCG
1 ATTGGGGATACTCCAACCCCG
338190 GCTTTATATC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 42 0.95
29 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (28 bp):
ATTGGGGATACTCCAACCCCGTTATTTC
Found at i:338261 original size:110 final size:107
Alignment explanation
Indices: 338103--338347 Score: 285
Period size: 110 Copynumber: 2.3 Consensus size: 107
338093 CAAAACACCA
* ** * * * * *
338103 ATTTTTCACAATTGGGGATAGTCCAATCCCGTTATTTCATTGGGGATACTCCAACCCCGTTA-TT
1 ATTTCTCACAATCAGGGATACTCCAACCCCGTTATTTCATCGGAGATACTCCAACCCCATTATTT
*
338167 TCCAAGGGAATACTCCAACCCCGGCTTTATATCTAAAAATATTG
66 TCCAAGGG-ATACTCAAACCCCGGCTTTATATC-AAAAATATTG
* *
338211 ATTTCTTTCATAATCAGGGATACTCCAACCCCGTTATTTCATCGGAGATACTCCAATCCCATTAT
1 ATTTC--TCACAATCAGGGATACTCCAACCCCGTTATTTCATCGGAGATACTCCAACCCCATTAT
** * * *
338276 TTTTGATGGGATACTCAAACCCCGGCTTTATTTCCAAAATATTG
64 TTTCCAAGGGATACTCAAACCCCGGCTTTATATCAAAAATATTG
* *
338320 ATTTCTCACAATCGGGGATACTTCAACC
1 ATTTCTCACAATCAGGGATACTCCAACC
338348 TCGGCCTTAT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
107 20 0.17
108 4 0.03
109 14 0.12
110 70 0.61
111 7 0.06
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (107 bp):
ATTTCTCACAATCAGGGATACTCCAACCCCGTTATTTCATCGGAGATACTCCAACCCCATTATTT
TCCAAGGGATACTCAAACCCCGGCTTTATATCAAAAATATTG
Found at i:342413 original size:12 final size:12
Alignment explanation
Indices: 342396--342420 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
342386 CATATTTTTG
342396 TGTATCGATACA
1 TGTATCGATACA
342408 TGTATCGATACA
1 TGTATCGATACA
342420 T
1 T
342421 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:342429 original size:31 final size:32
Alignment explanation
Indices: 342375--342438 Score: 121
Period size: 31 Copynumber: 2.0 Consensus size: 32
342365 TTACAAGCCA
342375 ATGTATCGATACATATTTTTGTGTATCGATAC
1 ATGTATCGATACATATTTTTGTGTATCGATAC
342407 ATGTATCGATACATA-TTTTGTGTATCGATAC
1 ATGTATCGATACATATTTTTGTGTATCGATAC
342438 A
1 A
342439 AGTTTGGCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 17 0.53
32 15 0.47
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (32 bp):
ATGTATCGATACATATTTTTGTGTATCGATAC
Found at i:342543 original size:20 final size:20
Alignment explanation
Indices: 342490--342545 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
342480 ACATCTTTTT
*
342490 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
342510 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
342529 CTATGTATCAATACTTT
1 C-ATGTATCGATACTTT
342546 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:351409 original size:80 final size:77
Alignment explanation
Indices: 351275--351584 Score: 317
Period size: 79 Copynumber: 3.9 Consensus size: 77
351265 TTTTAGAGAT
* * * * *
351275 AATAACGGGGCTGGAGTATCCCCGATTATGGAAAATCGGTGTTCTAGAAGTAAAAATCGAGGTTG
1 AATAACGGGGTTGGAGTATCCCCGATTATAGAAAATCAGTGTTTTAGAAAT-AAAATCG-GGTTG
351340 GAGTATCCTCTCGAA
64 GAGTATCCTC-CGAA
* *
351355 AATAACAGGGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTCA-AAATAAAATCGGGATTG
1 AATAACGGGGTTGGAGTATCCCCGATTATAGAAAATCAGTGTTTT-AGAAATAAAATCGGG-TTG
*
351419 GAGTATCCATGCGAA
64 GAGTATCC-TCCGAA
* * *
351434 AAT-ACTGGGGTTGGAGTATCCCCGATTATA-AGAAATCAATATTTTAGAAATAAAGTCGGGGTT
1 AATAAC-GGGGTTGGAGTATCCCCGATTATAGA-AAATCAGTGTTTTAGAAATAAAATC-GGGTT
351497 GGAGTATCC-CCGATGA
63 GGAGTATCCTCCGA--A
* * * *
351513 AA-AATCGAGGTTGGAGTATCCCCGATTATAAAAAAT-TGATGTTTTGGAAATAAAATCGGAGTT
1 AATAA-CGGGGTTGGAGTATCCCCGATTATAGAAAATCAG-TGTTTTAGAAATAAAATCGG-GTT
351576 GGAGTATCC
63 GGAGTATCC
351585 CTGATTGTGA
Statistics
Matches: 196, Mismatches: 20, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
77 3 0.02
78 8 0.04
79 136 0.69
80 48 0.24
81 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (77 bp):
AATAACGGGGTTGGAGTATCCCCGATTATAGAAAATCAGTGTTTTAGAAATAAAATCGGGTTGGA
GTATCCTCCGAA
Found at i:351614 original size:51 final size:51
Alignment explanation
Indices: 351513--351639 Score: 134
Period size: 51 Copynumber: 2.5 Consensus size: 51
351503 TCCCCGATGA
** * *
351513 AAAATC-GAGGTTGGAGTATCCCCGATTATAAAAAATTGATGTTTTGGAAAT
1 AAAATCGGA-GTTGGAGTATCCCCGATTATAAAAAATCAATATTTTAGAAAT
* * * *
351564 AAAATCGGAGTTGGAGTATCCCTGATTGTGAGAAATCAATATTTTAGAAAT
1 AAAATCGGAGTTGGAGTATCCCCGATTATAAAAAATCAATATTTTAGAAAT
*
351615 -AAAGCTGG-GTTGGAGTATCCCCGAT
1 AAAATC-GGAGTTGGAGTATCCCCGAT
351640 GAAAAATTGA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
50 20 0.31
51 42 0.66
52 2 0.03
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (51 bp):
AAAATCGGAGTTGGAGTATCCCCGATTATAAAAAATCAATATTTTAGAAAT
Found at i:353024 original size:20 final size:20
Alignment explanation
Indices: 352999--353051 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
352989 ACTCAGATAC
*
352999 ATCGATACATTTTTCAATGT
1 ATCGATACATTCTTCAATGT
353019 ATCGATACATTCTTCAATGT
1 ATCGATACATTCTTCAATGT
353039 ATCGATACATTCT
1 ATCGATACATTCT
353052 GTCTTTTTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (20 bp):
ATCGATACATTCTTCAATGT
Found at i:361443 original size:13 final size:13
Alignment explanation
Indices: 361425--361449 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
361415 ATTACTCAAA
361425 TGTATCGATACAT
1 TGTATCGATACAT
361438 TGTATCGATACA
1 TGTATCGATACA
361450 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:361502 original size:52 final size:52
Alignment explanation
Indices: 361458--361586 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
361448 CACTGATCTT
361458 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
361510 TGTATCAATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
361562 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
361587 TCATATTTAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Done.