genome.fa.s338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold338
Parameters: 2 7 7 80 10 50 1000
Length:  150142

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3235--3320	15	6.2	13	71	12	57	53	3	4	38	1.39
4862--5079	81	2.7	81	94	0	373	44	22	12	20	1.86
6767--6815	23	2.0	25	85	14	68	53	0	2	44	1.12
9650--9686	2	18.5	2	100	0	74	0	48	0	51	1.00
11473--11542	30	2.3	30	83	11	90	38	4	0	57	1.19
11533--11590	30	1.9	30	89	6	91	48	0	1	50	1.11
11472--11572	15	6.7	15	67	11	64	39	2	0	56	1.21
11677--11748	32	2.2	32	87	0	108	50	2	4	43	1.36
11869--11903	15	2.3	15	90	0	52	57	0	0	42	0.99
11885--11932	18	2.5	19	76	6	53	41	0	0	58	0.98
15055--15088	5	6.8	5	100	0	68	79	0	0	20	0.73
15765--15791	2	13.5	2	100	0	54	0	0	48	51	1.00
16734--16758	2	12.5	2	100	0	50	52	0	0	48	1.00
19515--19539	7	3.6	7	100	0	50	72	0	0	28	0.86
21020--21054	2	17.5	2	100	0	70	48	0	0	51	1.00
22275--22344	13	5.4	13	75	13	72	60	0	0	40	0.97
22283--22352	13	5.4	14	69	17	62	57	0	0	42	0.99
22274--22352	26	3.1	26	75	15	85	58	0	0	41	0.98
28677--28739	20	2.9	22	74	13	67	42	0	1	55	1.09
30262--30286	6	4.2	6	100	0	50	0	16	0	84	0.63
39023--39141	40	3.0	40	90	1	186	24	21	4	50	1.66
40170--40226	28	2.0	27	86	6	78	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40202--40247	21	2.4	19	85	10	58	45	0	2	52	1.13
40388--40483	43	2.3	43	76	10	99	48	1	3	46	1.24
40474--40523	18	3.1	16	81	13	50	52	2	0	46	1.12
40482--40527	18	2.7	18	80	6	51	54	2	0	43	1.12
40510--40559	25	2.0	25	88	0	73	44	0	2	54	1.11
40738--40997	92	2.8	92	92	1	414	26	34	7	31	1.84
44339--44378	11	3.8	11	90	9	57	62	0	0	37	0.95
44835--44878	14	3.1	14	87	9	54	59	0	0	40	0.98
44827--44882	25	2.3	25	81	9	62	60	0	0	39	0.97
44869--44919	27	2.0	25	85	14	68	45	0	0	54	0.99
44834--44943	32	3.3	34	81	11	111	53	0	0	46	1.00
44827--44948	37	3.5	36	75	12	114	54	0	0	45	0.99
44999--45040	14	2.8	15	85	10	59	54	0	0	45	0.99
46403--46462	13	4.4	13	73	17	50	43	0	6	50	1.28
48336--48377	3	14.0	3	84	0	57	28	64	4	2	1.26
48336--48376	12	3.4	12	89	0	64	26	65	4	2	1.25
49238--49277	16	2.5	16	87	0	53	57	2	0	40	1.12
49253--49294	22	2.0	21	81	13	50	64	2	0	33	1.07
49399--49486	46	2.0	44	93	4	149	39	9	3	47	1.52
49971--50014	22	2.0	21	87	12	63	59	0	0	40	0.98
50253--50305	24	2.3	23	80	6	54	64	5	3	26	1.33
50415--50452	19	2.0	19	85	10	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50448--50497	18	2.6	19	87	6	66	54	0	0	46	1.00
57115--57154	19	2.0	20	85	4	55	57	0	0	42	0.98
58207--58234	12	2.3	12	100	0	56	46	0	0	53	1.00
58720--58752	6	5.5	6	96	0	57	0	36	18	45	1.49
58722--58761	18	2.2	18	86	0	53	0	35	22	42	1.54
64076--64116	20	2.0	20	90	0	64	39	0	0	60	0.96
64392--64436	16	2.9	16	78	15	51	46	0	0	53	1.00
65571--65635	23	2.7	23	81	11	69	46	1	0	52	1.10
65614--65651	14	2.7	15	88	8	53	52	0	0	47	1.00
65629--65694	21	3.2	20	76	16	71	42	0	3	54	1.15
65677--65719	22	2.0	21	81	4	50	55	0	0	44	0.99
65681--65712	16	2.1	16	94	5	57	56	0	0	43	0.99
69992--70032	3	13.7	3	94	0	73	31	0	0	68	0.90
72691--72736	16	2.9	16	86	0	65	52	6	0	41	1.27
73781--73917	38	3.6	38	78	3	141	42	13	13	31	1.82
74438--74491	17	3.4	16	77	12	58	62	5	3	27	1.34
74797--74835	20	2.0	20	85	5	53	38	5	2	53	1.37
75386--75420	17	2.0	18	88	5	54	65	2	2	28	1.21
80813--80880	34	2.0	34	97	0	127	27	11	22	38	1.89
82466--82520	19	2.8	19	76	13	58	54	0	0	45	0.99
82899--82986	40	2.2	40	81	0	104	44	5	3	46	1.43
83177--83208	11	3.1	11	82	17	50	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86173--86209	2	19.0	2	84	15	51	48	2	0	48	1.15
86781--86822	21	2.0	21	85	0	57	45	0	0	54	0.99
86789--86832	21	2.1	21	87	8	63	43	0	0	56	0.99
87306--87346	20	2.0	20	86	9	57	31	2	0	65	1.05
89608--89646	20	2.0	20	90	10	62	35	0	0	64	0.94
93164--93195	15	2.0	17	88	11	50	50	3	0	46	1.17
93717--93753	13	2.7	14	83	8	58	32	0	0	67	0.91
93717--93754	7	5.6	7	81	6	51	31	0	0	68	0.90
94152--94195	22	2.0	22	86	8	63	56	0	0	43	0.99
94731--94773	3	14.3	3	100	0	86	67	0	0	32	0.91
95600--95649	18	2.7	20	76	14	54	56	8	0	36	1.29
96437--96493	27	2.1	27	93	0	96	42	12	5	40	1.65
96752--96809	2	29.0	2	92	0	98	46	1	0	51	1.11
97290--97340	2	25.5	2	95	0	93	49	1	0	49	1.12
99308--99346	17	2.3	18	86	8	55	69	0	0	30	0.89
99743--99784	21	1.9	23	81	18	54	45	2	0	52	1.13
100572--100624	17	3.1	18	81	5	56	35	3	1	58	1.27
100697--100765	6	11.2	6	71	11	50	33	1	2	62	1.19
100694--100740	12	3.8	13	81	18	64	38	0	0	61	0.96
100697--100736	11	3.5	11	86	6	62	40	0	0	60	0.97
100690--100744	16	3.5	16	78	9	60	38	0	0	61	0.96
102274--102318	20	2.2	20	88	0	63	80	8	0	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102286--102327	20	2.0	20	86	4	57	78	9	0	11	0.96
102393--102488	5	17.4	5	70	19	50	41	3	2	53	1.28
102419--102581	2	91.0	2	67	23	69	46	3	2	47	1.33
102419--102490	15	4.8	15	75	20	62	43	2	0	54	1.15
102393--102495	7	14.6	7	73	20	74	41	2	1	53	1.27
102431--102581	11	13.8	11	69	15	64	45	3	2	47	1.35
102513--102593	29	2.9	28	71	14	69	56	4	1	37	1.29
102698--102722	13	1.9	13	100	0	50	88	0	0	12	0.53
103370--103406	19	1.9	19	88	0	56	27	2	0	70	1.01
103659--103706	22	2.2	22	82	17	64	35	0	0	64	0.94
103663--103706	21	2.0	22	87	12	65	36	0	0	63	0.95
103723--103776	19	2.9	18	74	15	56	66	0	0	33	0.92
107583--107629	14	3.4	14	77	11	53	51	0	0	48	1.00
112647--112701	27	2.0	27	82	6	67	40	5	1	52	1.35
112896--112962	24	2.8	23	70	14	64	44	10	10	34	1.73
115485--115519	18	1.9	18	100	0	70	45	17	0	37	1.48
123001--123042	13	3.3	13	81	15	52	54	0	0	45	0.99
123453--123504	21	2.5	21	77	0	50	40	5	0	53	1.25
131465--131497	2	16.5	2	100	0	66	51	0	0	48	1.00
131847--131891	23	2.0	23	86	8	65	44	8	4	42	1.56
136976--137015	21	1.9	21	84	0	53	0	30	0	70	0.88
137059--137090	3	10.7	3	100	0	64	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138295--138332	17	2.2	18	85	4	51	21	13	26	39	1.89
140729--140759	13	2.4	13	100	0	62	16	16	6	61	1.54
142935--142964	14	2.1	14	93	0	51	83	0	0	16	0.65
143730--143764	2	17.5	2	93	0	61	45	0	2	51	1.16
149886--149934	15	3.4	15	78	16	59	34	12	0	53	1.39

Tables:   1

The End!