Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold340

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 358576
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 3 of 3

Found at i:356577 original size:33 final size:32

Alignment explanation


    Indices: 356535--356598  Score: 92
    Period size: 33  Copynumber: 2.0  Consensus size: 32

     356525 TACAAGCCAA

                         **                  
     356535 TGTATCGATACATTTTATGGTGTATCGATACAG
          1 TGTATCGATACATACTAT-GTGTATCGATACAG

                            *              
     356568 TGTATCGATACATACTGTGTGTATCGATACA
          1 TGTATCGATACATACTATGTGTATCGATACA

     356599 AGTTTGGCTA


Statistics
Matches: 28,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  32   13  0.46
  33   15  0.54

ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38


Consensus pattern (32 bp):   
TGTATCGATACATACTATGTGTATCGATACAG

Done.