Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold344
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1758742
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 3 of 11
Found at i:419561 original size:23 final size:24
Alignment explanation
Indices: 419531--419577 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
419521 TTTTAATTTA
419531 AAATAATTTAAA-TTTAAAAAATT
1 AAATAATTTAAATTTTAAAAAATT
419554 AAATAATTTAAATTTTTAAAAAAT
1 AAATAATTTAAA-TTTTAAAAAAT
419578 CCGACTCGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 12 0.55
25 10 0.45
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
AAATAATTTAAATTTTAAAAAATT
Found at i:422435 original size:2 final size:2
Alignment explanation
Indices: 422428--422465 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
422418 ATTTTATTAG
422428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
422466 TTACAAGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:422863 original size:18 final size:18
Alignment explanation
Indices: 422840--422874 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
422830 TAATTTTCTT
* *
422840 TTAATTTTGTTTTTGTGG
1 TTAATTTGGTATTTGTGG
422858 TTAATTTGGTATTTGTG
1 TTAATTTGGTATTTGTG
422875 TTCAGTATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.23, T:0.63
Consensus pattern (18 bp):
TTAATTTGGTATTTGTGG
Found at i:426116 original size:78 final size:77
Alignment explanation
Indices: 426011--426203 Score: 190
Period size: 79 Copynumber: 2.5 Consensus size: 77
426001 GGTTGAAGTG
* * * * * *
426011 TTCCCTTGAAAATAACGGGGCTCGAGTATCCCCGGTTGTGAGAAATCGATGA-TTAGAAAAAAAA
1 TTCCCTCGAAAATAAC-GGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTAGAAAAAAAA
*
426075 TCGGGATTGGAGTA
64 CCGGGATTGGAGTA
* * * * *
426089 TTCCCTCGAAAATAACGGAGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAG
1 TTCCCTCGAAAATAACGG-GTTGGAGTATCCCCGATTATGAGAAATCAATA-TTTAGAAAAAAAA
*
426154 CCGGGGTTGGAGTA
64 CCGGGATTGGAGTA
* * *
426168 TCCCCTCGGAAGTAACAGGGTTGGAGTATCCCCGAT
1 TTCCCTCGAAAATAAC-GGGTTGGAGTATCCCCGAT
426204 GAAATAACGA
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
77 3 0.03
78 40 0.43
79 49 0.52
80 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (77 bp):
TTCCCTCGAAAATAACGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGAAAAAAAACC
GGGATTGGAGTA
Found at i:426211 original size:28 final size:27
Alignment explanation
Indices: 426157--426231 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
426147 AATAAAGCCG
*** *
426157 GGGTTGGAGTATCCCCTCGGAAGTAAC
1 GGGTTGGAGTATCCCCGATGAAATAAC
426184 AGGGTTGGAGTATCCCCGATGAAATAAC
1 -GGGTTGGAGTATCCCCGATGAAATAAC
* *
426212 GAGGTTAGAGTATCCTCGAT
1 G-GGTTGGAGTATCCCCGAT
426232 TGTGAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (27 bp):
GGGTTGGAGTATCCCCGATGAAATAAC
Found at i:426413 original size:213 final size:212
Alignment explanation
Indices: 426147--426554 Score: 629
Period size: 213 Copynumber: 1.9 Consensus size: 212
426137 ATATTTTGGG
* * *
426147 AATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAACAGGGTTGGAGTATCCCCGATGAAATAAC
1 AATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATG-AATAAC
*
426212 GAGGTTAGAGTATCCTCGATTGTGAA-AAATTGGTATTTTTTGGAAATAAAATCGGAGTTGGAGT
65 GAGGTTAGAGTATCCCCGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCGGAGTTGGAGT
* * *
426276 ATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGGTTAGAGTATCCCCGATTGTG
130 ATCCCCGATTAAA-GAAAATTAGCGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTG
426341 GAAAAATTAGTGTTTTAGC
194 GAAAAATTAGTGTTTTAGC
** *
426360 AATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCCCGATGATTAACG
1 AATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATGAATAACG
* * *
426425 GGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTA
66 AGGTTAGAGTATCCCCGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCGGAGTTGGAGTA
* * * * *
426490 TCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCGCGATTGTGGA
131 TCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGA
426555 GAATTGAGAA
Statistics
Matches: 176, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
212 74 0.42
213 102 0.58
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (212 bp):
AATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATGAATAACG
AGGTTAGAGTATCCCCGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCGGAGTTGGAGTA
TCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGA
AAAATTAGTGTTTTAGC
Found at i:426435 original size:27 final size:27
Alignment explanation
Indices: 426368--426443 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
426358 GCAATAAAAC
426368 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTAT-CCC-CGATAAATAA
* * *
426396 TGGGGTTGGAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCGATAAATAA
426423 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
426444 TGTGAAGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.07
27 27 0.63
28 13 0.30
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGATAAATAA
Found at i:426531 original size:51 final size:51
Alignment explanation
Indices: 426249--426549 Score: 171
Period size: 52 Copynumber: 5.7 Consensus size: 51
426239 AATTGGTATT
* * * *
426249 TTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCG
1 TTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATA-GAAAATTAGTG
* * * * *
426301 TTTTGAAAATAAAACCGGGGTTAGAGTATCCCCGATTGTGGAAAAATTAGTG
1 TTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAG-AAAATTAGTG
* * * ** *** *
426353 TTTT-AGCAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATA-ATGGGGTTGGAGTA
1 TTTTGA-AAATAAAATCGGAGTTGGAGTAT-CCC-CGATTATAGA--AAATT--AGTG
*** ** * * * *
426409 TCCCCGATGAT-TAA-CGGGGTTGGAGTATCCCCGATTGT-GAAGAAATTGGTG
1 T-TTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAG-A-AAATTAGTG
*
426460 TTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGTG
1 --TTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGTG
* *
426513 TTTTGAAAATAAAATCGGAGTTGGAATATCCGCGATT
1 TTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATT
426550 GTGGAGAATT
Statistics
Matches: 186, Mismatches: 46, Indels: 35
0.70 0.17 0.13
Matches are distributed among these distances:
51 38 0.20
52 70 0.38
53 21 0.11
54 33 0.18
55 15 0.08
56 6 0.03
57 2 0.01
58 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
TTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGTG
Found at i:428934 original size:13 final size:13
Alignment explanation
Indices: 428916--428941 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
428906 ACAAAGATCC
428916 ATGTATCGATACA
1 ATGTATCGATACA
428929 ATGTATCGATACA
1 ATGTATCGATACA
428942 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:428958 original size:33 final size:33
Alignment explanation
Indices: 428895--428961 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
428885 AAAATTTCCA
***
428895 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
* *
428928 AATGTATCGATACACAGAAAAATGTTTCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
428961 A
1 A
428962 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:433255 original size:26 final size:26
Alignment explanation
Indices: 433218--433292 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
433208 TTGACAATAA
*
433218 CATTAAATAATTATTCAGTATTTTCT
1 CATTAAATAATTATTCAGTACTTTCT
* *
433244 TATTAAATAATTATTCAGTGCTTTCT
1 CATTAAATAATTATTCAGTACTTTCT
* *
433270 CACTAAATAATTATACAGTACTT
1 CATTAAATAATTATTCAGTACTT
433293 CATGAAATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.45
Consensus pattern (26 bp):
CATTAAATAATTATTCAGTACTTTCT
Found at i:434041 original size:12 final size:12
Alignment explanation
Indices: 433985--434048 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
433975 ATATGATATG
*
433985 TAAAATATT-GT
1 TAAAATATTATT
*
433996 TATAATATTATT
1 TAAAATATTATT
434008 TAATAA-ATTAATCAT
1 TAA-AATATT-AT--T
434023 CTAAAATATTATT
1 -TAAAATATTATT
434036 TAAAATATTATT
1 TAAAATATTATT
434048 T
1 T
434049 TTAAGTATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
11 8 0.19
12 19 0.44
13 5 0.12
15 5 0.12
16 6 0.14
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (12 bp):
TAAAATATTATT
Found at i:434067 original size:39 final size:39
Alignment explanation
Indices: 433985--434075 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 39
433975 ATATGATATG
* *
433985 TAAAATATTGTTATAATATTATTTAATAAATTAATCATC
1 TAAAATATTTTTAAAATATTATTTAATAAATTAATCATC
* * *
434024 TAAAATATTATTTAAAATATTATTT-TTAAGTATAATTAT-
1 TAAAATATT-TTTAAAATATTATTTAATAAAT-TAATCATC
434063 TAAAATATTTTTA
1 TAAAATATTTTTA
434076 CATGTTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 4 0.09
39 22 0.49
40 19 0.42
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (39 bp):
TAAAATATTTTTAAAATATTATTTAATAAATTAATCATC
Found at i:434500 original size:2 final size:2
Alignment explanation
Indices: 434493--434535 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
434483 TATATCCTTA
434493 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
434535 A
1 A
434536 AGTAGATACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:436525 original size:81 final size:81
Alignment explanation
Indices: 436393--436568 Score: 225
Period size: 81 Copynumber: 2.2 Consensus size: 81
436383 TTTTGATATA
* * ** *
436393 AAAGTTCTCACAAGATCCTAAG---GACTTGATTTTTATGTAATATTACCTAAATACCTTTAATG
1 AAAGTTCTCACATGATCCTAAGAACAACTTGATTTTTATGTAATATTACCTAAATACCCCTAATA
*
436455 GACGTGTTTCAACATG
66 GACATGTTTCAACATG
**
436471 AAAGTTC-CACATGATCCTAAGAACAACTTGATTTTTCATGTAATATTATTTAAATACCCCTAAT
1 AAAGTTCTCACATGATCCTAAGAACAACTTGATTTTT-ATGTAATATTACCTAAATACCCCTAAT
**
436535 AGACATGTTTTGACATG
65 AGACATGTTTCAACATG
436552 AAAGTTCTCACATGATC
1 AAAGTTCTCACATGATC
436569 TTATAGGCTC
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
77 13 0.16
78 7 0.08
80 11 0.13
81 43 0.52
82 9 0.11
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (81 bp):
AAAGTTCTCACATGATCCTAAGAACAACTTGATTTTTATGTAATATTACCTAAATACCCCTAATA
GACATGTTTCAACATG
Found at i:441522 original size:75 final size:75
Alignment explanation
Indices: 441397--441790 Score: 565
Period size: 75 Copynumber: 5.3 Consensus size: 75
441387 GATGAAATGA
* * * *
441397 TAATCTGAGATAATCTGCACGATAATTACAATCAACAAATGTTTCAGCATATTTCACAGTACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTAC
*
441462 TACCAACAAC
66 TATCAACAAC
* * *
441472 TAATCCGAGATAATTTGCACAATAACTACAATTAACAAATGTTTCTGCATATTTCACATTACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTAC
441537 TATCAACAAC
66 TATCAACAAC
* * *
441547 TAATCCGAGATAATCTGCACGATAACTATAATCAATAAATGTTTCTGCATATTTCACAATACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTAC
* *
441612 TATTAATAAC
66 TATCAACAAC
* * * *
441622 TAATCCAAGATAATCTGCATGATAACTACAATCAATAAATGTTTCTGCATATTTCACATTGCTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTAC
441687 TATCAACAAC
66 TATCAACAAC
* * * * *
441697 TAA-CTCAAGATAATTTGCTCGATAACTACAATTAACAAATGTTTCTGCATATTTCGCATTACTA
1 TAATC-CGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTA
441761 CTATCAACAAC
65 CTATCAACAAC
*
441772 TAATTCGAGATAATCTGCA
1 TAATCCGAGATAATCTGCA
441791 TATTTCACAT
Statistics
Matches: 283, Mismatches: 34, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
74 1 0.00
75 282 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (75 bp):
TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTAC
TATCAACAAC
Found at i:447309 original size:22 final size:21
Alignment explanation
Indices: 447278--447323 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
447268 TTTTACACCC
*
447278 AAAAAAAATAATAATACA-ATT
1 AAAAAAAATAA-AATAAATATT
447299 AAAAAATAATAAAATAAATATT
1 AAAAAA-AATAAAATAAATATT
447321 AAA
1 AAA
447324 TTACCTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAAAAATAAAATAAATATT
Found at i:447900 original size:17 final size:16
Alignment explanation
Indices: 447878--447911 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
447868 AATTTAAAAA
*
447878 TATTAGTAGTAGTGTTT
1 TATTAGCAGTA-TGTTT
447895 TATTAGCAGTATGTTT
1 TATTAGCAGTATGTTT
447911 T
1 T
447912 GGGTTATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.24, C:0.03, G:0.21, T:0.53
Consensus pattern (16 bp):
TATTAGCAGTATGTTT
Found at i:453852 original size:31 final size:32
Alignment explanation
Indices: 453811--453964 Score: 110
Period size: 31 Copynumber: 4.9 Consensus size: 32
453801 ATAAGTTTAT
*
453811 CTAACGAGTTATAATAATTAGCATAGATTCA-
1 CTAACAAGTTATAATAATTAGCATAGATTCAG
*
453842 CTAACAAGTTATAATAATTAGCATA-AGCTCAG
1 CTAACAAGTTATAATAATTAGCATAGA-TTCAG
* * **
453874 TTAAGGAA-TTATAATAATTAGCATA-AACCAG
1 CTAA-CAAGTTATAATAATTAGCATAGATTCAG
*
453905 CTAA-AGAGTTATAATAGTTAGTACA-AG-TCTCA-
1 CTAACA-AGTTATAATAATTAG--CATAGAT-TCAG
*
453937 CTAATGAA-TTATAATAATTAGCATAGAT
1 CTAA-CAAGTTATAATAATTAGCATAGAT
453965 GTTGCTAATG
Statistics
Matches: 99, Mismatches: 11, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
29 1 0.01
30 4 0.04
31 47 0.47
32 39 0.39
33 7 0.07
34 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (32 bp):
CTAACAAGTTATAATAATTAGCATAGATTCAG
Found at i:453889 original size:63 final size:64
Alignment explanation
Indices: 453819--453964 Score: 183
Period size: 63 Copynumber: 2.3 Consensus size: 64
453809 ATCTAACGAG
* * *
453819 TTATAATAATTAGCATAGATTCA-CTAACA-AGTTATAATAATTAGCATAAG-CTCAGTTAAGGA
1 TTATAATAATTAGCATAGATCCAGCTAA-AGAGTTATAATAATTAGCACAAGTCTCA-CTAAGGA
453881 A
64 A
* * * *
453882 TTATAATAATTAGCATA-AACCAGCTAAAGAGTTATAATAGTTAGTACAAGTCTCACTAATGAA
1 TTATAATAATTAGCATAGATCCAGCTAAAGAGTTATAATAATTAGCACAAGTCTCACTAAGGAA
453945 TTATAATAATTAGCATAGAT
1 TTATAATAATTAGCATAGAT
453965 GTTGCTAATG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
62 4 0.06
63 62 0.87
64 5 0.07
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (64 bp):
TTATAATAATTAGCATAGATCCAGCTAAAGAGTTATAATAATTAGCACAAGTCTCACTAAGGAA
Found at i:453891 original size:32 final size:32
Alignment explanation
Indices: 453819--453961 Score: 134
Period size: 32 Copynumber: 4.5 Consensus size: 32
453809 ATCTAACGAG
* *
453819 TTATAATAATTAGCAT-AGATTCA-CTAACA-AG
1 TTATAATAATTAGCATAAG-CTCAGCTAA-AGAA
* *
453850 TTATAATAATTAGCATAAGCTCAGTTAAGGAA
1 TTATAATAATTAGCATAAGCTCAGCTAAAGAA
* *
453882 TTATAATAATTAGCATAAAC-CAGCTAAAGAG
1 TTATAATAATTAGCATAAGCTCAGCTAAAGAA
* * * *
453913 TTATAATAGTTAGTACAAGTCTCA-CTAATGAA
1 TTATAATAATTAGCATAAG-CTCAGCTAAAGAA
453945 TTATAATAATTAGCATA
1 TTATAATAATTAGCATA
453962 GATGTTGCTA
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
31 42 0.47
32 46 0.51
33 2 0.02
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (32 bp):
TTATAATAATTAGCATAAGCTCAGCTAAAGAA
Found at i:456439 original size:14 final size:16
Alignment explanation
Indices: 456413--456444 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
456403 TTCTTTTAAC
456413 ATTTTATAAAAAT-TA
1 ATTTTATAAAAATATA
456428 ATTTTA-AAAAATATA
1 ATTTTATAAAAATATA
456443 AT
1 AT
456445 AATAGTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTTATAAAAATATA
Found at i:456537 original size:15 final size:16
Alignment explanation
Indices: 456514--456548 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
456504 TCTGAAAGTA
*
456514 AATTTTTTTAAAA-AT
1 AATTCTTTTAAAATAT
456529 AATTCTTTTAAAATAT
1 AATTCTTTTAAAATAT
456545 AATT
1 AATT
456549 AGTTTTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AATTCTTTTAAAATAT
Found at i:457105 original size:25 final size:24
Alignment explanation
Indices: 457051--457108 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
457041 GACATGATAC
* *
457051 AATATAAAAAATAATTAAAATACG
1 AATATAAAAAATAAATAAAACACG
* *
457075 ACATATAAAAATATAAATACAACATG
1 A-ATATAAAAA-ATAAATAAAACACG
457101 AATATAAA
1 AATATAAA
457109 TATTTATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.04
25 16 0.57
26 11 0.39
ACGTcount: A:0.66, C:0.07, G:0.03, T:0.24
Consensus pattern (24 bp):
AATATAAAAAATAAATAAAACACG
Found at i:457135 original size:33 final size:33
Alignment explanation
Indices: 457098--457164 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 33
457088 TAAATACAAC
457098 ATGAAT-ATAAATAT-TTATCAAAATTTATATAAA
1 ATGAATCATAAATATATT-T-AAAATTTATATAAA
*
457131 ATGAATCATTAATATATTTAAAATTTATATAAA
1 ATGAATCATAAATATATTTAAAATTTATATAAA
457164 A
1 A
457165 ATATAATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 21 0.68
34 8 0.26
35 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (33 bp):
ATGAATCATAAATATATTTAAAATTTATATAAA
Found at i:457212 original size:15 final size:14
Alignment explanation
Indices: 457192--457235 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
457182 TAATTATTAC
457192 ATAAAAATAATATAA
1 ATAAAAATAA-ATAA
*
457207 ATAAAAATAAATAT
1 ATAAAAATAAATAA
*
457221 AT-AAAATAAAAAA
1 ATAAAAATAAATAA
457234 AT
1 AT
457236 TACACACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 11 0.42
14 5 0.19
15 10 0.38
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
ATAAAAATAAATAA
Found at i:457219 original size:16 final size:15
Alignment explanation
Indices: 457192--457226 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
457182 TAATTATTAC
457192 ATAAAAATAATATAA
1 ATAAAAATAATATAA
*
457207 ATAAAAATAA-ATAT
1 ATAAAAATAATATAA
457221 ATAAAA
1 ATAAAA
457227 TAAAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAAATAATATAA
Found at i:457224 original size:18 final size:20
Alignment explanation
Indices: 457196--457232 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
457186 TATTACATAA
457196 AAATAATAT-AAATAAAAAT
1 AAATAATATAAAATAAAAAT
457215 AAAT-ATATAAAATAAAAA
1 AAATAATATAAAATAAAAA
457233 AATTACACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATAATATAAAATAAAAAT
Found at i:459323 original size:19 final size:18
Alignment explanation
Indices: 459297--459365 Score: 76
Period size: 19 Copynumber: 4.0 Consensus size: 18
459287 AATTTCAGCG
459297 ATTTGTATCGATACATAA
1 ATTTGTATCGATACATAA
459315 ATGTTGTATCGATAC---A
1 AT-TTGTATCGATACATAA
459331 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
459347 GTATTGTATCGATACATAA
1 AT-TTGTATCGATACATAA
459366 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.26
16 3 0.07
18 2 0.05
19 27 0.63
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
ATTTGTATCGATACATAA
Found at i:459336 original size:32 final size:32
Alignment explanation
Indices: 459300--459362 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
459290 TTCAGCGATT
*
459300 TGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAATATTGTATCGATACAA
*
459332 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAATATTGTATCGATACA
459363 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAATATTGTATCGATACAA
Found at i:459337 original size:13 final size:13
Alignment explanation
Indices: 459319--459343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
459309 ACATAAATGT
459319 TGTATCGATACAA
1 TGTATCGATACAA
459332 TGTATCGATACA
1 TGTATCGATACA
459344 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:459429 original size:21 final size:21
Alignment explanation
Indices: 459385--459441 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
459375 GCCAAGGGAA
*
459385 TGTATCGATACAT-TTTTCTG
1 TGTATCGATACATCTATTCTG
*
459405 TGTATCGATACATCTATTCTT
1 TGTATCGATACATCTATTCTG
459426 TGTATCGATACATCTA
1 TGTATCGATACATCTA
459442 GGAAGTTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 13 0.38
21 21 0.62
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.46
Consensus pattern (21 bp):
TGTATCGATACATCTATTCTG
Found at i:461997 original size:82 final size:82
Alignment explanation
Indices: 461839--461989 Score: 218
Period size: 82 Copynumber: 1.9 Consensus size: 82
461829 TTCTATAATC
* *
461839 GGGGATACTCCAACTCCGATTTTATTTCCAACAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCCAACAAACACCAATTTCTTCACAATCGGGGATACTCC
461904 AACCCCGTTATTTCCGA
66 AACCCCGTTATTTCCGA
* *** *
461921 GGGGATACTCCAACCCCGACTTTATTTCC-A-AAATATTGATTT-TTCATAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCCAACAAACACCAATTTCTTCACAATCGGGGATACTCC
461983 AACCCCG
66 AACCCCG
461990 GTTTTATTGC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 26 0.42
80 8 0.13
81 1 0.02
82 27 0.44
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (82 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAACAAACACCAATTTCTTCACAATCGGGGATACTCC
AACCCCGTTATTTCCGA
Found at i:462038 original size:54 final size:52
Alignment explanation
Indices: 461960--462144 Score: 200
Period size: 54 Copynumber: 3.5 Consensus size: 52
461950 AAAATATTGA
* *
461960 TTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAATT
1 TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATT-CTAAAACAC-CAATT
*
462014 TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATT
1 TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCT-AAAACACCAATT
* * *
462067 TTCCTTT---AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAACACCAA--
1 TT--TTTCACAATCGGGGATACTCCAACCCCGGTTTTA--TTCTAAAACACCAATT
* *
462118 TTTTTAACAATCGAGGATACTCCAACC
1 TTTTTCACAATCGGGGATACTCCAACC
462145 TCGTTATTTC
Statistics
Matches: 114, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
49 3 0.03
51 2 0.02
52 43 0.38
53 17 0.15
54 46 0.40
55 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (52 bp):
TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCTAAAACACCAATT
Found at i:462101 original size:52 final size:52
Alignment explanation
Indices: 461921--462144 Score: 199
Period size: 52 Copynumber: 4.3 Consensus size: 52
461911 TTATTTCCGA
* * * *** *
461921 GGGGATACTCCAACCCCGACTTTA-TTTCCAAAATATTGATTTT-TCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAAACACCAATTTTCT-TTAATC
* * * *
461972 GGGGATACTCCAACCCCGGTTTTA-TTGCTAAAACACTAAATTTT-TTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAAACAC-CAATTTTCTTT---AATC
*
462026 GGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAAACACCAATTTT-CTTTAATC
* **
462078 GGGGATACTCCAACTCCGATTTTATTTTCAAAAACACCAATTTT-TAACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAAACACCAATTTTCT-TTAATC
*
462130 GAGGATACTCCAACC
1 GGGGATACTCCAACC
462145 TCGTTATTTC
Statistics
Matches: 147, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
51 32 0.22
52 54 0.37
53 20 0.14
54 35 0.24
55 6 0.04
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (52 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAAACACCAATTTTCTTTAATC
Found at i:462163 original size:28 final size:28
Alignment explanation
Indices: 462127--462203 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
462117 ATTTTTAACA
* * *
462127 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
462155 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
462183 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
462204 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:462299 original size:79 final size:80
Alignment explanation
Indices: 462158--462312 Score: 208
Period size: 79 Copynumber: 1.9 Consensus size: 80
462148 TTATTTCATC
* * *
462158 GGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCCAAATATT
1 GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGGCTTTATTCCCAAAATATT
*
462223 -GATTTCTCATAATT
66 AAATTTCTCATAATT
* * *
462237 GGGGATACTCCAACCCCGTTATTTTCGAGGGAACACTCCAACCCC-GTTATTA-TCTCCAAAATA
1 GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGGCT-TTATTC-CCAAAATA
462300 TTAAATTTCTCAT
64 TTAAATTTCTCAT
462313 CGGGAAATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 4 0.06
79 53 0.80
80 9 0.14
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (80 bp):
GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGGCTTTATTCCCAAAATATT
AAATTTCTCATAATT
Found at i:464626 original size:22 final size:21
Alignment explanation
Indices: 464588--464628 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
464578 TTTATTATTT
**
464588 TAAATTTTAAATCTAAATTAA
1 TAAATTTTAAAAATAAATTAA
464609 TAAATATTTAAAAATAAATT
1 TAAAT-TTTAAAAATAAATT
464629 CACATGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAATTTTAAAAATAAATTAA
Found at i:464764 original size:211 final size:210
Alignment explanation
Indices: 464503--464896 Score: 532
Period size: 211 Copynumber: 1.9 Consensus size: 210
464493 CTAAATGATC
* * * * * * * *
464503 TAAATATTTAAAAAAGAGTTCATATGATATTCATCTACTTTAAAATTAATAAGA-TTTTTCTATT
1 TAAATATTTAAAAAAAAGTCCACATGATATTAAACGACTTTAAAATTAATAA-ACTTTTCCAATT
* *
464567 TAAATATG-AACTT-TATTATTTTAAATTTTAAATCTAAAT-TAATAAATATTTAAAAAT-AAAT
65 TAAATATGTAACTTCTATTAATTT--A-TTTAAATCTAAATAAAATAAATATTTAAAAATAAAAT
* *
464628 TCACATGATATT-AATCTACTTTAAAATTAATAAAATTTTCCTA-TTTAAATATTTAATTGTATC
127 TCACATGATATTGAAT-GACTTTAAAATTAATAAAATTTT--TATTTTAAATATATAATTGTATC
464691 TACCTATCTAAATTTAAATTAA
189 TACCTATCTAAATTTAAATTAA
464713 TAAATATTTAAAAATAAAGTCCACATGATATTAAACGACTTTAAAATTAATAAACTTTTCCAATT
1 TAAATATTTAAAAA-AAAGTCCACATGATATTAAACGACTTTAAAATTAATAAACTTTTCCAATT
* *
464778 TAAATATGTAATTTCTATTAATTTATTTAAATTTAAATAAAATAAATATTTAAAAATAAAATTCA
65 TAAATATGTAACTTCTATTAATTTATTTAAATCTAAATAAAATAAATATTTAAAAATAAAATTCA
*
464843 CATGATATTGAATGACTTTAAAATTAATAAACTTTTTATTTTAAATATATAATT
130 CATGATATTGAATGACTTTAAAATTAATAAAATTTTTATTTTAAATATATAATT
464897 TTTATTAATT
Statistics
Matches: 161, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
210 29 0.18
211 80 0.50
212 41 0.25
213 11 0.07
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.43
Consensus pattern (210 bp):
TAAATATTTAAAAAAAAGTCCACATGATATTAAACGACTTTAAAATTAATAAACTTTTCCAATTT
AAATATGTAACTTCTATTAATTTATTTAAATCTAAATAAAATAAATATTTAAAAATAAAATTCAC
ATGATATTGAATGACTTTAAAATTAATAAAATTTTTATTTTAAATATATAATTGTATCTACCTAT
CTAAATTTAAATTAA
Found at i:464766 original size:105 final size:104
Alignment explanation
Indices: 464474--464932 Score: 457
Period size: 106 Copynumber: 4.3 Consensus size: 104
464464 AGAGTGTAAT
* * * * * * * *
464474 TTTATTAAATTATTTAAATCTAAATGATCTAAATATTTAAAAA-AGAGTTCATATGATATTCATC
1 TTTATT-ATTTATTTAAATTTAAATTA-ATAAATATTTAAAAATAAAGTTCACATGATATTAAAC
* * * *
464538 TACTTTAAAATTAATAAGATTTTTCTATTTAAATA-TGAAC
64 GACTTTAAAATTAATAAAATTTTCCTATTTAAATATTTAAC
*
464578 TTTATTATTTTAAATTTTAAATCTAAATTAATAAATATTTAAAAATAAA-TTCACATGATATTAA
1 TTTATTA-TTT--A-TTTAAATTTAAATTAATAAATATTTAAAAATAAAGTTCACATGATATTAA
* *
464642 TCTACTTTAAAATTAATAAAATTTTCCTATTTAAATATTTAA-
62 ACGACTTTAAAATTAATAAAATTTTCCTATTTAAATATTTAAC
** * *
464684 TTGTATCTACCTATCTAAATTTAAATTAATAAATATTTAAAAATAAAGTCCACATGATATTAAAC
1 TT-TAT-TATTTATTTAAATTTAAATTAATAAATATTTAAAAATAAAGTTCACATGATATTAAAC
* * * *
464749 GACTTTAAAATTAATAAACTTTTCCAATTTAAATATGTAAT
64 GACTTTAAAATTAATAAAATTTTCCTATTTAAATATTTAAC
* * *
464790 TTCTATTAATTTATTTAAATTTAAATAAAATAAATATTTAAAAATAAAATTCACATGATATTGAA
1 TT-TATT-ATTTATTTAAATTTAAAT-TAATAAATATTTAAAAATAAAGTTCACATGATATTAAA
* * * *
464855 TGACTTTAAAATTAATAAACTTTT--TATTTTAAATATATAATT
63 CGACTTTAAAATTAATAAAATTTTCCTA-TTTAAATATTTAA-C
464897 TTTATTAATTTATTTAAATTT-AATTGAATAAA-ATTT
1 TTTATT-ATTTATTTAAATTTAAATT-AATAAATATTT
464933 TTTTAAATAC
Statistics
Matches: 309, Mismatches: 31, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
103 1 0.00
104 44 0.14
105 63 0.20
106 116 0.38
107 83 0.27
108 2 0.01
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (104 bp):
TTTATTATTTATTTAAATTTAAATTAATAAATATTTAAAAATAAAGTTCACATGATATTAAACGA
CTTTAAAATTAATAAAATTTTCCTATTTAAATATTTAAC
Found at i:464913 original size:50 final size:49
Alignment explanation
Indices: 464752--464920 Score: 115
Period size: 50 Copynumber: 3.2 Consensus size: 49
464742 ATTAAACGAC
* * *
464752 TTTAAAATTAATAAACTTTTCCAATTTAAATATGTAATTTCTATTAATTTA
1 TTTAAAATTAATAAACTTTT--TATTTAAATATATAATTTATATTAATTTA
* * *** * * *
464803 TTTAAATTTAAATAAAATAAATATTTAAAAATAAAATTCACATGATATTGAA-TGA
1 TTTAAAATT-AATAAACTTTTTATTTAAATATATAATT----T-ATATT-AATTTA
*
464858 CTTTAAAATTAATAAACTTTTTATTTTAAATATATAATTTTTATTAATTTA
1 -TTTAAAATTAATAAACTTTTTA-TTTAAATATATAATTTATATTAATTTA
*
464909 TTTAAATTTAAT
1 TTTAAAATTAAT
464921 TGAATAAAAT
Statistics
Matches: 87, Mismatches: 21, Indels: 21
0.67 0.16 0.16
Matches are distributed among these distances:
50 26 0.30
51 14 0.16
52 8 0.09
54 1 0.01
55 15 0.17
56 23 0.26
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (49 bp):
TTTAAAATTAATAAACTTTTTATTTAAATATATAATTTATATTAATTTA
Found at i:465787 original size:20 final size:20
Alignment explanation
Indices: 465764--465830 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
465754 AAGTACCTAG
* *
465764 ATGTATTGATACATTTTTTA
1 ATGTATCGATACATTTTTCA
* * *
465784 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
465804 ATATATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
465824 ATGTATC
1 ATGTATC
465831 AATGCATTCT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:469994 original size:27 final size:27
Alignment explanation
Indices: 469962--470023 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
469952 GTAAATGAAG
*
469962 AATAACATAA-TAGTAAATTATTGATAA
1 AATAACA-AAGTAGTAAATGATTGATAA
469989 AATAACAAAGTAGTAAATGATTGATAA
1 AATAACAAAGTAGTAAATGATTGATAA
*
470016 TATAACAA
1 AATAACAA
470024 TATATAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.29
Consensus pattern (27 bp):
AATAACAAAGTAGTAAATGATTGATAA
Found at i:470402 original size:38 final size:37
Alignment explanation
Indices: 470354--470435 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 37
470344 CTGGCTAACT
* *
470354 TTTTATTTCTTTTTTAATTTTTATTCAAATATTTTAC
1 TTTTATTTCTTATTTAATTTCTATTCAAATATTTTAC
470391 TTTCTATTTCTTATTTAATTTCTATTCAAATATTTTAC
1 TTT-TATTTCTTATTTAATTTCTATTCAAATATTTTAC
470429 TTTTATT
1 TTTTATT
470436 ATTACTAACG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
37 7 0.17
38 35 0.83
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (37 bp):
TTTTATTTCTTATTTAATTTCTATTCAAATATTTTAC
Found at i:470435 original size:19 final size:20
Alignment explanation
Indices: 470365--470435 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
470355 TTTATTTCTT
* *
470365 TTTTAATTTTTATTCAAATA
1 TTTTACTTTCTATTCAAATA
*
470385 TTTTACTTTCTATTTC--TTA
1 TTTTACTTTCTA-TTCAAATA
*
470404 -TTTAATTTCTATTCAAATA
1 TTTTACTTTCTATTCAAATA
470423 TTTTACTTT-TATT
1 TTTTACTTTCTATT
470436 ATTACTAACG
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 3 0.07
18 10 0.24
19 8 0.20
20 17 0.41
21 3 0.07
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTACTTTCTATTCAAATA
Found at i:475404 original size:5 final size:5
Alignment explanation
Indices: 475394--475431 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
475384 ATTACACTAG
475394 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
475432 TATAACTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:476643 original size:22 final size:22
Alignment explanation
Indices: 476615--476713 Score: 65
Period size: 22 Copynumber: 4.3 Consensus size: 22
476605 ACATATGTAT
476615 TAGTAAATAATGAATAACATAA
1 TAGTAAATAATGAATAACATAA
* **
476637 TAGTAAATTATTAATAAAATAACATGG
1 TAGT-AA--A-TAAT-GAATAACATAA
* **
476664 TAGTAAATGATTG-ATAGTATAA
1 TAGTAAAT-AATGAATAACATAA
* *
476686 TAGTAAATAATTAGTAACATAA
1 TAGTAAATAATGAATAACATAA
476708 TAGTAA
1 TAGTAA
476714 GTTTCATAAT
Statistics
Matches: 56, Mismatches: 14, Indels: 14
0.67 0.17 0.17
Matches are distributed among these distances:
21 2 0.04
22 29 0.52
23 3 0.05
24 3 0.05
25 1 0.02
26 6 0.11
27 12 0.21
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.32
Consensus pattern (22 bp):
TAGTAAATAATGAATAACATAA
Found at i:477982 original size:2 final size:2
Alignment explanation
Indices: 477975--478004 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
477965 TATTAACAAA
477975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
478005 GTCCATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:478603 original size:16 final size:15
Alignment explanation
Indices: 478576--478615 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
478566 CATCATATTA
*
478576 ATAAATTAAATAATT
1 ATAAAATAAATAATT
*
478591 TTAAAGATAAATAATT
1 ATAAA-ATAAATAATT
478607 ATAAAATAA
1 ATAAAATAA
478616 GATTACATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (15 bp):
ATAAAATAAATAATT
Found at i:478716 original size:22 final size:22
Alignment explanation
Indices: 478669--478733 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
478659 TAATCAGTTC
* *
478669 ATAACATAGTAATAAACACTTA
1 ATAACATAGTAATAAATAATTA
*
478691 ATAACATAGTAATAAATAATTT
1 ATAACATAGTAATAAATAATTA
*
478713 ATAATATA-TGAATAAAATAAT
1 ATAACATAGT-AAT-AAATAAT
478734 GATAAACGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 1 0.03
22 29 0.78
23 7 0.19
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.32
Consensus pattern (22 bp):
ATAACATAGTAATAAATAATTA
Found at i:478845 original size:32 final size:33
Alignment explanation
Indices: 478799--478864 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 33
478789 AAGTTAATAG
* *
478799 TAAATTTTATAATTATAAT-TGTAAAAATTTATA
1 TAAATTATATAATTA-AATATATAAAAATTTATA
*
478832 TAAATTAT-TAATTAAATATATAAAATTTTATA
1 TAAATTATATAATTAAATATATAAAAATTTATA
478864 T
1 T
478865 TTTTATAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 3 0.10
32 19 0.66
33 7 0.24
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (33 bp):
TAAATTATATAATTAAATATATAAAAATTTATA
Found at i:484227 original size:17 final size:16
Alignment explanation
Indices: 484188--484264 Score: 61
Period size: 15 Copynumber: 4.9 Consensus size: 16
484178 ATGGAAAAAT
*
484188 TAATTTATTTTTTATA
1 TAATTTAATTTTTATA
**
484204 TTTTTTAAATTTTTATA
1 TAATTT-AATTTTTATA
* *
484221 TAATTT-ATATTTATT
1 TAATTTAATTTTTATA
*
484236 TAATTTAATTATTATA
1 TAATTTAATTTTTATA
*
484252 T--TTTATTTTTTAT
1 TAATTTAATTTTTAT
484265 TTATATAATT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
14 10 0.21
15 13 0.28
16 11 0.23
17 13 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TAATTTAATTTTTATA
Found at i:484227 original size:26 final size:27
Alignment explanation
Indices: 484198--484263 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 27
484188 TAATTTATTT
484198 TTTATATTTTTTAAATTT-TTA-TATAA
1 TTTATATTTTTTAAATTTATTATTAT-A
484224 TTTATATTTATTT-AATTTAATTATTATA
1 TTTATATTT-TTTAAATTT-ATTATTATA
484252 TTT-TATTTTTTA
1 TTTATATTTTTTA
484264 TTTATATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
26 17 0.49
27 8 0.23
28 7 0.20
29 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTATATTTTTTAAATTTATTATTATA
Found at i:485781 original size:2 final size:2
Alignment explanation
Indices: 485774--485803 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
485764 ATGAATGTGC
485774 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
485804 TTAAAGTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:487138 original size:14 final size:14
Alignment explanation
Indices: 487099--487146 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
487089 TTTAAATAAA
487099 TCAATTGAATTAAT
1 TCAATTGAATTAAT
*
487113 TAAATTGAATTAATT
1 TCAATTGAATTAA-T
*
487128 TCAATTG-ATTAAA
1 TCAATTGAATTAAT
487141 TCAATT
1 TCAATT
487147 CAAATAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 6 0.20
14 17 0.57
15 7 0.23
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (14 bp):
TCAATTGAATTAAT
Found at i:489445 original size:24 final size:24
Alignment explanation
Indices: 489417--489469 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
489407 ATTTTAGTAA
489417 ATTATATAAAAAATAATTTTAAAT
1 ATTATATAAAAAATAATTTTAAAT
* * ***
489441 GTTATTTTTTAAATAATTTTAAAT
1 ATTATATAAAAAATAATTTTAAAT
489465 ATTAT
1 ATTAT
489470 TTTGACAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATTATATAAAAAATAATTTTAAAT
Found at i:489470 original size:24 final size:24
Alignment explanation
Indices: 489427--489472 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
489417 ATTATATAAA
*
489427 AAATAATTTTAAATGTTATTTTTT
1 AAATAATTTTAAATATTATTTTTT
489451 AAATAATTTTAAATATTATTTT
1 AAATAATTTTAAATATTATTTT
489473 GACAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
AAATAATTTTAAATATTATTTTTT
Found at i:490236 original size:20 final size:20
Alignment explanation
Indices: 490211--490307 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
490201 GAAAAGAACA
490211 TGTATCGATACATTTTTCAT
1 TGTATCGATACATTTTTCAT
490231 TGTATCGATACATTCTGGATTTTGACTCAAT
1 TGTATCGAT--A--C---ATTTT---TCA-T
490262 TGTATCGATACATTTTTCAT
1 TGTATCGATACATTTTTCAT
*
490282 TGTATCGATACATTTTTCAA
1 TGTATCGATACATTTTTCAT
490302 TGTATC
1 TGTATC
490308 AATATATCTA
Statistics
Matches: 65, Mismatches: 1, Indels: 22
0.74 0.01 0.25
Matches are distributed among these distances:
20 35 0.54
21 3 0.05
22 1 0.02
24 6 0.09
27 6 0.09
29 1 0.02
30 3 0.05
31 10 0.15
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCAT
Found at i:490277 original size:24 final size:20
Alignment explanation
Indices: 490260--490307 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
490250 TTTTGACTCA
490260 ATTGTATCGATACATTTTTC
1 ATTGTATCGATACATTTTTC
490280 ATTGTATCGATACATTTTTC
1 ATTGTATCGATACATTTTTC
*
490300 AATGTATC
1 ATTGTATC
490308 AATATATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (20 bp):
ATTGTATCGATACATTTTTC
Found at i:491848 original size:13 final size:13
Alignment explanation
Indices: 491830--491856 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
491820 CCAAGGAAAC
491830 GTATCGATACATT
1 GTATCGATACATT
491843 GTATCGATACATT
1 GTATCGATACATT
491856 G
1 G
491857 ATCTTTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:494746 original size:141 final size:141
Alignment explanation
Indices: 494489--494746 Score: 419
Period size: 141 Copynumber: 1.8 Consensus size: 141
494479 AGTAAGATGC
* *
494489 TAAGTGACTCCAAGATCTATTATCTGGATATTTCATGAATTTTCTAATCTGCGATCAAAGTCATC
1 TAAGTGACTCCAAGATCTATTATCTGGACATTTCATGAATTTTCTAATCAGCGATCAAAGTCATC
* *
494554 GTACAAAACTACTATTTGATTTAGCAAAATCTAAACTATTCACAATTTAGAAACCTTAGTCTTGA
66 GTACAAAACTACTATTGGATTTAGCAAAATCTAAACTATTCACAATGTAGAAACCTTAGTCTTGA
494619 ATATTGAGGGA
131 ATATTGAGGGA
* * * * *
494630 TAAGTGACTCCAAGATCTTTTATTTGGACATTTCATGAATTTTTTGATCAGTGATCAAAGTCATC
1 TAAGTGACTCCAAGATCTATTATCTGGACATTTCATGAATTTTCTAATCAGCGATCAAAGTCATC
494695 G-AGCAAAACTACTATTGGATTTAGCAAAATCTAAACTATTCACAATGTAGAA
66 GTA-CAAAACTACTATTGGATTTAGCAAAATCTAAACTATTCACAATGTAGAA
494747 TATGGATGGA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
140 1 0.01
141 106 0.99
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (141 bp):
TAAGTGACTCCAAGATCTATTATCTGGACATTTCATGAATTTTCTAATCAGCGATCAAAGTCATC
GTACAAAACTACTATTGGATTTAGCAAAATCTAAACTATTCACAATGTAGAAACCTTAGTCTTGA
ATATTGAGGGA
Found at i:496094 original size:21 final size:23
Alignment explanation
Indices: 496039--496104 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
496029 TAATAAGATA
* *
496039 TATTACAGATTATGATATAATAC
1 TATTAAAGATTATGATACAATAC
* *
496062 TATTAAAAATTATGATACAAT-G
1 TATTAAAGATTATGATACAATAC
496084 TA-TAAAGATTACT-ATACAATA
1 TATTAAAGATTA-TGATACAATA
496105 TTTTTATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 15 0.42
22 3 0.08
23 18 0.50
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (23 bp):
TATTAAAGATTATGATACAATAC
Found at i:497813 original size:4 final size:4
Alignment explanation
Indices: 497797--497857 Score: 52
Period size: 4 Copynumber: 14.8 Consensus size: 4
497787 TTAATAATAA
* * *
497797 AAAT AAGT AAAT AAAT AAAT AAAT ATTATT AAAT AATAA AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT A--AAT AAAT AA-AT AAAT AAAT AAAT
*
497848 ATA- AAAT AAA
1 AAAT AAAT AAA
497858 GATTTTTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
3 2 0.04
4 37 0.82
5 3 0.07
6 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:497840 original size:39 final size:38
Alignment explanation
Indices: 497784--497857 Score: 112
Period size: 39 Copynumber: 1.9 Consensus size: 38
497774 TTATGTTAAA
* *
497784 TATTTAATAATAAAAATAAGTAAATAAATAAATAAATAT
1 TATTAAATAATAAAAATAAATAAATAAA-AAATAAATAT
*
497823 TATTAAATAATAAAAATAAATAAATATAAAATAAA
1 TATTAAATAATAAAAATAAATAAATAAAAAATAAA
497858 GATTTTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 7 0.22
39 25 0.78
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (38 bp):
TATTAAATAATAAAAATAAATAAATAAAAAATAAATAT
Found at i:497846 original size:17 final size:17
Alignment explanation
Indices: 497789--497857 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 17
497779 TTAAATATTT
*
497789 AATAATAAAAATAAGTA
1 AATAATAAAAATAAATA
*
497806 AATAAATAAATAAATATTATTA
1 AAT-AAT-AA-AAATA--AATA
497828 AATAATAAAAATAAATA
1 AATAATAAAAATAAATA
497845 AAT-AT-AAAATAAA
1 AATAATAAAAATAAA
497858 GATTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
15 8 0.18
16 2 0.04
17 9 0.20
18 3 0.07
19 7 0.16
20 7 0.16
21 3 0.07
22 6 0.13
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (17 bp):
AATAATAAAAATAAATA
Found at i:499512 original size:19 final size:19
Alignment explanation
Indices: 499488--499536 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
499478 TTTTTATAAT
499488 TTTTTATTTAAATTAAAAA
1 TTTTTATTTAAATTAAAAA
*
499507 TTTTTATTT--ATTATAAA
1 TTTTTATTTAAATTAAAAA
*
499524 TTTAT-TTTAAATT
1 TTTTTATTTAAATT
499537 TAATACTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 3 0.12
17 11 0.42
18 3 0.12
19 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTATTTAAATTAAAAA
Found at i:499524 original size:17 final size:17
Alignment explanation
Indices: 499476--499526 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
499466 TAAATATTAA
* *
499476 ATTTTTTATAATTTTTT
1 ATTTATTATAAATTTTT
*
499493 ATTTAAATTAAAAATTTTT
1 ATTT--ATTATAAATTTTT
499512 ATTTATTATAAATTT
1 ATTTATTATAAATTT
499527 ATTTTAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.50
19 14 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTATTATAAATTTTT
Found at i:499751 original size:33 final size:34
Alignment explanation
Indices: 499699--499762 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
499689 AAAAATTAAA
499699 TTATTTATAATCATATA-TTTTAAATTGAATTTT
1 TTATTTATAATCATATATTTTTAAATTGAATTTT
* *
499732 TTATTTATCATCA-ATTATTTTTAAGTTGAAT
1 TTATTTATAATCATA-TATTTTTAAATTGAAT
499763 GATTAAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 1 0.04
33 14 0.52
34 12 0.44
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (34 bp):
TTATTTATAATCATATATTTTTAAATTGAATTTT
Found at i:506017 original size:2 final size:2
Alignment explanation
Indices: 506012--506042 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
506002 GCTATATATA
506012 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
506043 TCAGTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:511594 original size:2 final size:2
Alignment explanation
Indices: 511589--511624 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
511579 TTTTTTTAGA
511589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
511625 GTACACACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:518257 original size:8 final size:8
Alignment explanation
Indices: 518244--518268 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
518234 TTGCTAAAAG
518244 ACATTCAA
1 ACATTCAA
518252 ACATTCAA
1 ACATTCAA
518260 ACATTCAA
1 ACATTCAA
518268 A
1 A
518269 TTTTGGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ACATTCAA
Found at i:522276 original size:20 final size:19
Alignment explanation
Indices: 522227--522303 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 19
522217 GTAAAAAGAT
522227 AAAATGTATCGATACATTA
1 AAAATGTATCGATACATTA
*
522246 AAGAATATATCGATACATTCA
1 AA-AATGTATCGATACATT-A
* * *
522267 TACATGTATCGATATATTGA
1 AAAATGTATCGATACATT-A
*
522287 AAAATGTATTGATACAT
1 AAAATGTATCGATACAT
522304 CTGAGTAAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
19 2 0.04
20 42 0.91
21 2 0.04
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (19 bp):
AAAATGTATCGATACATTA
Found at i:523414 original size:10 final size:9
Alignment explanation
Indices: 523372--523413 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
523362 AACAAGCATC
523372 TTTTTTATT
1 TTTTTTATT
* *
523381 CTTATTATT
1 TTTTTTATT
523390 TTTTTTATT
1 TTTTTTATT
523399 TTTTTTATT
1 TTTTTTATT
523408 TTTTTT
1 TTTTTT
523414 TCTATTCTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTATT
Found at i:525107 original size:78 final size:78
Alignment explanation
Indices: 524991--525196 Score: 207
Period size: 78 Copynumber: 2.6 Consensus size: 78
524981 GAGATAATAA
* * * * * * * *
524991 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
525056 -TTAGAAAAAAAAT
65 TTTAGAAAAAAAAC
* * * *
525069 CGGGATTGGAGTATCCTCTCGAAAATAACAGGGTTGGAGTATCCCCAATTATGAGAAATTAATAT
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-
* * * *
525134 TTTGGGAATAAAGC
65 TTTAGAAAAAAAAC
* * *
525148 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
525197 GAAATAACAA
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
77 1 0.01
78 51 0.50
79 51 0.50
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (78 bp):
CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAC
Found at i:525204 original size:28 final size:28
Alignment explanation
Indices: 525148--525219 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
525138 GGAATAAAGC
** *
525148 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
525176 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
**
525204 CAAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
525220 TCGACTGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:525420 original size:51 final size:51
Alignment explanation
Indices: 525207--525592 Score: 253
Period size: 52 Copynumber: 7.4 Consensus size: 51
525197 GAAATAACAA
* * * * * *
525207 GGTTGGAGTATCCTCGACTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGT-GTTTTGGAAATAAAACCGG
* * * * *
525259 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTAGTGTTTTGGAAATAAAACCGG
* * *
525311 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTGTTTTGGAAATAAAACCGG
* * * * * **
525363 GATTGGAATATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
* * **** * *
525414 GGTTGGAGTATCCCC--TCA-GAAATAACGGGGTTGGAGTATCCCCGATGAT-CAA-CGG
1 GGTTGGAGTATCCCCGATTATGAAA-AA-----TT--AGTGTTTTGGA-AATAAAACCGG
* * *
525469 GGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAA-AAATTAGTG--TTTTGGAAATAAAACCGG
* * *
525523 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTGGAAATAAAACCGG
* *
525574 AGTTGGAATATCCCCGATT
1 GGTTGGAGTATCCCCGATT
525593 GTGGAGAATT
Statistics
Matches: 260, Mismatches: 54, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
48 4 0.02
49 4 0.02
51 73 0.28
52 95 0.37
53 26 0.10
54 24 0.09
55 18 0.07
56 7 0.03
57 3 0.01
58 5 0.02
59 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
Found at i:525444 original size:263 final size:263
Alignment explanation
Indices: 525102--525597 Score: 782
Period size: 263 Copynumber: 1.9 Consensus size: 263
525092 AATAACAGGG
* * * *
525102 TTGGAGTATCCCCAATTATGAGAAATTAATATTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCT
1 TTGGAATATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCT
* * *
525167 CGGAAGTAACGGGGTTGGAGTATCCCCGATGAAAT-AACAAGGTTGGAGTATCCTCGACTGTGAA
66 CAGAAATAACGGGGTTGGAGTATCCCCGATG--ATCAACAAGGTTGGAGTATCCCCGACTGTGAA
*
525231 -AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGT
129 GAAATTGGTGATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA-GAAAATTAGTGT
* *
525294 TTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAA
193 TTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAA
525359 CCGGGA
258 CCGGGA
* *
525365 TTGGAATATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCT
1 TTGGAATATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCT
** *
525430 CAGAAATAACGGGGTTGGAGTATCCCCGATGATCAACGGGGTTGGAGTATCCCCGATTGTGAAGA
66 CAGAAATAACGGGGTTGGAGTATCCCCGATGATCAACAAGGTTGGAGTATCCCCGACTGTGAAGA
* *
525495 AATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTT
131 AATTGGTGATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTGTTTT
*
525560 GAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
196 GAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGA
525598 GAATTGAGAA
Statistics
Matches: 212, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
261 2 0.01
262 25 0.12
263 145 0.68
264 40 0.19
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (263 bp):
TTGGAATATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCT
CAGAAATAACGGGGTTGGAGTATCCCCGATGATCAACAAGGTTGGAGTATCCCCGACTGTGAAGA
AATTGGTGATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTGTTTT
GAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCG
GGA
Found at i:525475 original size:27 final size:26
Alignment explanation
Indices: 525411--525486 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 26
525401 GAAATAAAGT
525411 CGGGGTTGGAGTATCCCCTCAGA-AATAA
1 CGGGGTTGGAGTAT-CCC-C-GATAATAA
*
525439 CGGGGTTGGAGTATCCCCGATGATCAA
1 CGGGGTTGGAGTATCCCCGATAAT-AA
525466 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
525487 TGTGAAGAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 2 0.04
26 3 0.07
27 26 0.58
28 14 0.31
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCCCGATAATAA
Found at i:527977 original size:13 final size:13
Alignment explanation
Indices: 527959--527984 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
527949 ACAAAGATCC
527959 ATGTATCGATACA
1 ATGTATCGATACA
527972 ATGTATCGATACA
1 ATGTATCGATACA
527985 TAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:527980 original size:33 final size:33
Alignment explanation
Indices: 527938--528004 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
527928 AAAATTTCCA
***
527938 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
527971 AATGTATCGATACATAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
528004 A
1 A
528005 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:528048 original size:19 final size:18
Alignment explanation
Indices: 528024--528091 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
528014 CAGTAGCTAA
528024 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
528043 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
528058 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
528075 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
528092 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:528064 original size:13 final size:13
Alignment explanation
Indices: 528046--528070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
528036 ACAATACTTA
528046 TGTATCGATACAT
1 TGTATCGATACAT
528059 TGTATCGATACA
1 TGTATCGATACA
528071 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:528068 original size:32 final size:32
Alignment explanation
Indices: 528027--528089 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
528017 TAGCTAATTA
*
528027 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
528059 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
528090 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:528189 original size:21 final size:21
Alignment explanation
Indices: 528127--528182 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
528117 GTTGGGACCT
528127 TGTATCGATACATTCAAACAA
1 TGTATCGATACATTCAAACAA
528148 TGTATCGATACATTCAAACAA
1 TGTATCGATACATTCAAACAA
528169 TGTATCGATACATT
1 TGTATCGATACATT
528183 TGGACAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (21 bp):
TGTATCGATACATTCAAACAA
Found at i:528900 original size:55 final size:55
Alignment explanation
Indices: 528816--529823 Score: 1572
Period size: 55 Copynumber: 18.3 Consensus size: 55
528806 ATAAACTGTA
* * * * * *
528816 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
528871 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
528926 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
528981 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* **
529036 TCCTGTTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
529091 TCCTGCTCTTTGAGGACT-AGAAGGCGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
529146 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
529201 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
529256 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
529311 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
529366 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACTAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* * *
529421 TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAATTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
529476 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
529531 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
529586 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
529641 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
529696 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
529751 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
529806 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
529824 AAAAAGCGGA
Statistics
Matches: 891, Mismatches: 43, Indels: 38
0.92 0.04 0.04
Matches are distributed among these distances:
54 26 0.03
55 840 0.94
56 25 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:528980 original size:29 final size:28
Alignment explanation
Indices: 528890--529805 Score: 158
Period size: 28 Copynumber: 33.2 Consensus size: 28
528880 TTGAGGACTG
528890 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * ** *
528918 GAAAGGTGTCCTGC-TCTT-TG-GGGAATG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
528945 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
528973 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
*
529001 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
**** * * *
529028 GAAAGGTGTCC-TGTTCTT-TGAGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
**
529055 AAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * *
529083 AAGAGGTGTCCTGC-TCTT-TGAGGAC--T
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
*
529109 AGAAGGCGCCACCAACTTGTGTGGGCTTT
1 A-AAGGTGCCACCAACTTGTGTGGGCTTT
** * *
529138 AAGAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGG-CTTT
529165 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
529193 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
529221 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
529248 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
529275 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
529303 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
*
529331 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
529358 GAAAGGTGTCCTGC-TCTT-TGAGGACTGG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
* *
529386 AAA-ATGCCACTAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
529413 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* * *
529440 GAAGGCGCCACCAATTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
529468 AAGAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGG-CTTT
529495 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
529523 AAGAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGG-CTTT
529550 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
529578 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
529605 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
529633 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
529661 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
529688 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
529715 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
529743 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
529770 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
529798 AAGAGGTG
1 AA-AGGTG
529806 TCCTGCTCTT
Statistics
Matches: 585, Mismatches: 210, Indels: 184
0.60 0.21 0.19
Matches are distributed among these distances:
25 46 0.08
26 118 0.20
27 119 0.20
28 139 0.24
29 117 0.20
30 46 0.08
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (28 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:530845 original size:12 final size:12
Alignment explanation
Indices: 530830--530861 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
530820 TGTTTTTTTG
530830 TTTTTTTTTCCT
1 TTTTTTTTTCCT
530842 TTTTTTTTTCCT
1 TTTTTTTTTCCT
530854 TTTTTTTT
1 TTTTTTTT
530862 GAAGAGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTTTTCCT
Found at i:533883 original size:16 final size:16
Alignment explanation
Indices: 533858--533893 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
533848 TTACAAGAAT
*
533858 ATCAACAAAATTTAGC
1 ATCAACAAAATTAAGC
*
533874 ATCAATAAAATTAAGC
1 ATCAACAAAATTAAGC
533890 ATCA
1 ATCA
533894 CACCTCTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.17, G:0.06, T:0.25
Consensus pattern (16 bp):
ATCAACAAAATTAAGC
Found at i:534169 original size:15 final size:17
Alignment explanation
Indices: 534138--534169 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
534128 CAAGAAGAAT
534138 AAAACAAGAATGCAGGA
1 AAAACAAGAATGCAGGA
534155 AAAACAA-AA-GCAGGA
1 AAAACAAGAATGCAGGA
534170 CCACACAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.62, C:0.12, G:0.22, T:0.03
Consensus pattern (17 bp):
AAAACAAGAATGCAGGA
Found at i:534396 original size:42 final size:42
Alignment explanation
Indices: 534252--534716 Score: 407
Period size: 42 Copynumber: 11.2 Consensus size: 42
534242 TATTCTCCCA
* * * ** *
534252 GGTCAAAGCCAACGGGCAGACTTAGGG-AAAGAAAGT-TCCAT
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGA-AAAGTCTCCAG
* * * ** *
534293 GGTCAAAGCCGACAGGTAGACTAAGGATAAAAAAGGTCTCCCG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAA-GTCTCCAG
* * * * *
534336 AGTCAAAGTCGACTGGCAGACTGAGGGTTGAAAAGTCTTCAC
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
*
534378 GGTCAAAGCCGACAGGCAGATTGAGGGTTGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
* * **
534420 GGTCAAAGCCGACAGGTAGACTAAGGG-AAAGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGA-AAAGTCTCCAG
* **
534462 GGAT-GAAGCCGACAGGCAGACT-ACGGG-AAAGAAAGTCTCCAG
1 GG-TCAAAGCCGACAGGCAGACTGA-GGGTTGA-AAAGTCTCCAG
* * * * *
534504 GGACAAAGCCGATAGGTAGACTGAAGGGTTGAAAAATCTCTAG
1 GGTCAAAGCCGACAGGCAGACTG-AGGGTTGAAAAGTCTCCAG
* * *
534547 GGTCAAAGCCGACAAGCAGACTGAGGGATGAAAAGTCTCGAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
* * *
534589 GGTC--A----A-AGGCAGACTAAGGGGTGAAAAGTCACCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
*
534624 GGTCAAAGCCGACAGGCAGACTGAGGGATGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
* * **
534666 GGTCAAAACCGACAGGCAGACTAAGGGAAGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
534708 GGTCAAAGC
1 GGTCAAAGC
534717 GAAGAAAAGT
Statistics
Matches: 349, Mismatches: 58, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
35 28 0.08
36 1 0.00
37 1 0.00
40 1 0.00
41 28 0.08
42 227 0.65
43 61 0.17
44 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (42 bp):
GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
Found at i:534720 original size:25 final size:25
Alignment explanation
Indices: 534692--534741 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
534682 CAGACTAAGG
534692 GAAGAAAAGTCTCCAGGGTCAAAGC
1 GAAGAAAAGTCTCCAGGGTCAAAGC
534717 GAAGAAAAGTCTCCAGGGTCAAAGC
1 GAAGAAAAGTCTCCAGGGTCAAAGC
534742 TGATAGGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.12
Consensus pattern (25 bp):
GAAGAAAAGTCTCCAGGGTCAAAGC
Found at i:534766 original size:67 final size:67
Alignment explanation
Indices: 534653--534783 Score: 217
Period size: 67 Copynumber: 2.0 Consensus size: 67
534643 ACTGAGGGAT
534653 GAAAAGTCTCCAGGGTCAAAACCGACAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCG
1 GAAAAGTCTCCAGGGTCAAAACCGACAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCG
534718 AA
66 AA
* * * * *
534720 GAAAAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATGAAAAGTCTCCAGGGTCAAAGC
1 GAAAAGTCTCCAGGGTCAAAACCGACAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGC
534784 CGACAGGCAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.37, C:0.20, G:0.30, T:0.13
Consensus pattern (67 bp):
GAAAAGTCTCCAGGGTCAAAACCGACAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCG
AA
Found at i:534823 original size:43 final size:43
Alignment explanation
Indices: 534719--535098 Score: 452
Period size: 42 Copynumber: 9.0 Consensus size: 43
534709 GTCAAAGCGA
* *
534719 AGAAAAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGAT
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* * *
534762 -GAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGAGAT
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* * *
534804 AGAAAAGTCTCCAGGGTCAAAACTGGTAGGCAGACTAAGGGAT
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* *
534847 AGAAAAGTCTCCAGGGTTAAAGCCGACAGGCAGACTAAGGG-T
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* *
534889 AGGAAAGTCTCCAGAGTCAAAGCCGATAGGCAGACTAAGGGA-
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* * * * *
534931 AGGAAAGTGTCAAGGGTCAAAGCCGACAGGCAGACTAAGGGAA
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* *
534974 AG-AAAGTCTCCAGGGACGAAGCCGATAGGCAGACTAAGGGA-
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
* * *
535015 AAAAAAGTCTCCAAGGTCAAAGCCGCA-A-GCAGACTAAAAGG-T
1 AGAAAAGTCTCCAGGGTCAAAGCCG-ATAGGCAGACT-AAGGGAT
* * * *
535057 AGGAAACTCTCCAGGGTTAAAGTCGATAGGCAGACTAAGGGA
1 AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGA
535099 AAGCAAAAAA
Statistics
Matches: 288, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
41 9 0.03
42 197 0.68
43 82 0.28
ACGTcount: A:0.38, C:0.18, G:0.31, T:0.13
Consensus pattern (43 bp):
AGAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGAT
Found at i:543354 original size:22 final size:19
Alignment explanation
Indices: 543306--543354 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
543296 TAATTAAGCA
543306 AATACTGATGAATGATTATG
1 AATA-TGATGAATGATTATG
*
543326 AAAATGATGAATGAATGTCATG
1 AATATGATGAATG-AT-T-ATG
543348 AATATGA
1 AATATGA
543355 ATGCCATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 9 0.38
20 5 0.21
21 1 0.04
22 9 0.38
ACGTcount: A:0.45, C:0.04, G:0.20, T:0.31
Consensus pattern (19 bp):
AATATGATGAATGATTATG
Found at i:547673 original size:16 final size:15
Alignment explanation
Indices: 547647--547687 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 15
547637 ATAAAAAAGA
547647 ATTTTTTATTATTTT
1 ATTTTTTATTATTTT
547662 ATTTTGTTATTATTTTTT
1 ATTTT-TTATTA--TTTT
547680 ATTTTTTA
1 ATTTTTTA
547688 ATTCTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.22
16 6 0.26
17 3 0.13
18 9 0.39
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (15 bp):
ATTTTTTATTATTTT
Found at i:549296 original size:15 final size:15
Alignment explanation
Indices: 549265--549298 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
549255 GACTTTTATT
549265 TATTTATTTATTTTA
1 TATTTATTTATTTTA
549280 TATTT-TTTATTTCTA
1 TATTTATTTATTT-TA
549295 TATT
1 TATT
549299 ATCTTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (15 bp):
TATTTATTTATTTTA
Found at i:555173 original size:137 final size:136
Alignment explanation
Indices: 554796--555204 Score: 784
Period size: 135 Copynumber: 3.0 Consensus size: 136
554786 CTATACATGC
554796 CAATAATTTAGAATTTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAAAAATA
1 CAATAATTTAGAATTTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAAAAATA
554861 AATAAATAAATAAATGATGACAAATACTAAAAAAGGAGCACATTCTTTCACACAATTTGGCCATA
66 AATAAATAAATAAATGATGACAAATACTAAAAAAGGAGCACATTCTTTCACACAATTTGGCCATA
554926 AACACA
131 AACACA
554932 CAATAATTTAGAA-TTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAAAAATA
1 CAATAATTTAGAATTTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAAAAATA
* *
554996 AATAAATAAATAAATGATGGCAAATACGAAAAAAGGAGCACATTCTTTCACACAATTTGGCCATA
66 AATAAATAAATAAATGATGACAAATACTAAAAAAGGAGCACATTCTTTCACACAATTTGGCCATA
555061 AACACA
131 AACACA
555067 CAATAATTTAGAATTTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAATAAAT
1 CAATAATTTAGAATTTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAA-AAAT
555132 AAATAAATAAATAAATGATGACAAATACTAAAAAAGGAGCACATTCTTTCACACAATTTGGCCAT
65 AAATAAATAAATAAATGATGACAAATACTAAAAAAGGAGCACATTCTTTCACACAATTTGGCCAT
555197 AAACACA
130 AAACACA
555204 C
1 C
555205 GTCCTAGGCA
Statistics
Matches: 267, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
135 133 0.50
136 59 0.22
137 75 0.28
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.28
Consensus pattern (136 bp):
CAATAATTTAGAATTTTTTTTTTCATCCCTAATAAAGAATAAGATACTAAAAATGCAAAAAAATA
AATAAATAAATAAATGATGACAAATACTAAAAAAGGAGCACATTCTTTCACACAATTTGGCCATA
AACACA
Found at i:561244 original size:2 final size:2
Alignment explanation
Indices: 561239--561273 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
561229 CCTCTCTTAA
561239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
561274 GATTGTAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:563833 original size:25 final size:24
Alignment explanation
Indices: 563783--563833 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 24
563773 TTTGTTTATT
*
563783 ATTTGTTTGTTTAAATTTTATTTAG
1 ATTTATTTGTTT-AATTTTATTTAG
563808 ATTTATTTGTTT-ATTGTTATTGTAG
1 ATTTATTTGTTTAATT-TTATT-TAG
563833 A
1 A
563834 CATTTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 3 0.13
24 5 0.22
25 15 0.65
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.63
Consensus pattern (24 bp):
ATTTATTTGTTTAATTTTATTTAG
Found at i:564126 original size:21 final size:21
Alignment explanation
Indices: 564097--564138 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
564087 TTGGATGCTG
*
564097 AAGCCCAAAGTATCGATACTT
1 AAGCCCAAAGTATCAATACTT
*
564118 AAGCTCAAAGTATCAATACTT
1 AAGCCCAAAGTATCAATACTT
564139 GGTGTTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.26
Consensus pattern (21 bp):
AAGCCCAAAGTATCAATACTT
Found at i:567114 original size:79 final size:79
Alignment explanation
Indices: 566989--567213 Score: 276
Period size: 79 Copynumber: 2.9 Consensus size: 79
566979 TGAGAAATTT
* * * * *
566989 AATATTTTGGAGATAATAA-CGGGATTAGAGTATCCTCT-TGAAATAACGGGGTTGGAGTATCCC
1 AATATTTAGGAAATAA-AACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCC
* *
567052 CGGTTGTGAAAAATC
65 CGATTATGAAAAATC
* *
567067 GATGA-TTAGGAAATAAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCC
1 AAT-ATTTAGGAAATAAAACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCC
* *
567131 CAATTATGAGAAATC
65 CGATTATGAAAAATC
* * * *
567146 AATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAGTAATGGGGTTGGAGTATCCCC
1 AATATTTAGGAAATAAAACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCC
567211 GAT
66 GAT
567214 AAAATAACAA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
77 2 0.02
78 29 0.23
79 95 0.75
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (79 bp):
AATATTTAGGAAATAAAACCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCC
GATTATGAAAAATC
Found at i:567179 original size:51 final size:51
Alignment explanation
Indices: 567114--567393 Score: 163
Period size: 52 Copynumber: 5.4 Consensus size: 51
567104 TCGGAAATAA
*
567114 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAAC
1 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAGTATTTTGGAAATAAAAC
* *** * ****
567165 CGGGGTTGGAGTATCCCCTCGGAAGTAATG-GGGTTGGAGTATCCCCGATAA-AATAA-
1 CGGGGTTGGAGTAT-CCC-C--AA-TTATGAGAAAT-CAGTATTTTGGA-AATAA-AAC
** * * * * ** * *
567221 CAAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAGT-ATTTTGGAAATAAAAC
* * * * * *
567273 CAGAGTTGGAGTATCCCCAATTA-AAGGAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCAATTATGA-G-AAATCAGTATTTTGGAAATAAAAC
* * * *
567325 CGAGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGC
1 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAGTATTTTGGAAATAAAAC
567376 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
567394 TCGGAGGTAA
Statistics
Matches: 165, Mismatches: 49, Indels: 30
0.68 0.20 0.12
Matches are distributed among these distances:
51 60 0.36
52 61 0.37
53 9 0.05
54 1 0.01
55 6 0.04
56 24 0.15
57 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCAATTATGAGAAATCAGTATTTTGGAAATAAAAC
Found at i:567219 original size:107 final size:108
Alignment explanation
Indices: 567108--567501 Score: 367
Period size: 107 Copynumber: 3.7 Consensus size: 108
567098 ATCCCCTCGG
* * * *
567108 AAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTTGGAAATAAAACCGGGGTT
1 AAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTTGGAAATAAAACCGGAGTT
*
567172 GGAGTATCCCCTCGGAAGTAATGGGGTTGGAGTATCCCCGATA
66 GGAGTATCCCCTCGGAAGTAAAGGGGTTGGAGTATCCCCGATA
* * * *** * * *
567215 AAATAACAAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCAGAGTT
1 AAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTTGGAAATAAAACCGGAGTT
* ** * ****
567280 GGAGTAT-CCC-C--AATTAAAGGAAAATT--AGTGTTTTAGA-A
66 GGAGTATCCCCTCGGAAGTAAAGG--GGTTGGAGTATCCCCGATA
* * *
567318 ATAA-AACCGAGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTTGGAAATAAAGCCGGGG
1 A-AATAA-CGAGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTTGGAAATAAAACCGGAG
* * *
567381 TTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGATG
64 TTGGAGTATCCCCTCGGAAGTAAAGGGGTTGGAGTATCCCCGATA
* * *** * *
567426 AAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTT
1 AAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTTGGAAATAAAACCGGAGTT
567491 GGAGTATCCCC
66 GGAGTATCCCC
567502 GATTAAAGGA
Statistics
Matches: 218, Mismatches: 55, Indels: 27
0.73 0.18 0.09
Matches are distributed among these distances:
103 29 0.13
104 46 0.21
105 3 0.01
106 3 0.01
107 78 0.36
108 59 0.27
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (108 bp):
AAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTTGGAAATAAAACCGGAGTT
GGAGTATCCCCTCGGAAGTAAAGGGGTTGGAGTATCCCCGATA
Found at i:567432 original size:28 final size:28
Alignment explanation
Indices: 567376--567452 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
567366 GAAATAAAGC
*** **
567376 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
567404 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
567432 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
567453 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:567481 original size:211 final size:211
Alignment explanation
Indices: 567117--567561 Score: 775
Period size: 211 Copynumber: 2.1 Consensus size: 211
567107 GAAATAACGG
*
567117 GGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCC
*
567182 CTCGGAAGTAATGGGGTTGGAGTATCCCCGATAAAATAACAAGGTTGGAGTATCCTCGATTGTGA
66 CTCGGAAGTAACGGGGTTGGAGTATCCCCGATAAAATAACAAGGTTGGAGTATCCTCGATTGTGA
567247 AAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAATTAGTGTT
131 AAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAATTAGTGTT
567312 TT-AGAAATAAAACCGA
196 TTGA-AAATAAAACCGA
*
567328 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCC
* * *
567393 CTCGGAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGA
66 CTCGGAAGTAACGGGGTTGGAGTATCCCCGATAAAATAACAAGGTTGGAGTATCCTCGATTGTGA
* * *
567458 AAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTT
131 AAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAATTAGTGTT
* *
567523 TTGAAAATAAAATCGG
196 TTGAAAATAAAACCGA
567539 GGTTGGAGTATCCCCGATTATGA
1 GGTTGGAGTATCCCCGATTATGA
567562 ACAATTGAGA
Statistics
Matches: 222, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
211 221 1.00
212 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (211 bp):
GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCC
CTCGGAAGTAACGGGGTTGGAGTATCCCCGATAAAATAACAAGGTTGGAGTATCCTCGATTGTGA
AAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAATTAGTGTT
TTGAAAATAAAACCGA
Found at i:567505 original size:52 final size:52
Alignment explanation
Indices: 567436--567568 Score: 187
Period size: 52 Copynumber: 2.6 Consensus size: 52
567426 AAATAACGAG
* *
567436 GTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
* * * *
567488 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTG-TTTTGAAAATAAAATCGGG
1 GTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
*
567540 GTTGGAGTATCCCCGATTATGAACAATTG
1 GTTGGAGTATCCCCGATTATGAAAAATTG
567569 AGAAGCTTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
51 8 0.11
52 52 0.73
53 11 0.15
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
Found at i:569944 original size:13 final size:13
Alignment explanation
Indices: 569926--569951 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
569916 ACAAAGATCG
569926 ATGTATCGATACA
1 ATGTATCGATACA
569939 ATGTATCGATACA
1 ATGTATCGATACA
569952 TTTTCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:571036 original size:78 final size:78
Alignment explanation
Indices: 570901--571079 Score: 189
Period size: 78 Copynumber: 2.3 Consensus size: 78
570891 AGTCTCTGGG
* * * * *
570901 TTCATATTGATACATGTCTATTAGAGTCATTTAGGTAATAGCACTTTAATACAAAGTCTCTAGGT
1 TTCATATTGATACATGTCCATTAGAGTCATTTAGATAAAAGCACATTAATACAAAGTCTCTAGGG
570966 TTATGTGGGTACT
66 TTATGTGGGTACT
* * * ** *
570979 TTCATGTTGATACATGTCCATTAG-GATCCTTTAGATAAAAGTACATTAATATTAAGTCTTTAGG
1 TTCATATTGATACATGTCCATTAGAG-TCATTTAGATAAAAGCACATTAATACAAAGTCTCTAGG
*** *
571043 GTTATGTAAATATT
65 GTTATGTGGGTACT
* *
571057 TTCATATCGATGCATGTCCATTA
1 TTCATATTGATACATGTCCATTA
571080 AGGTCACTTA
Statistics
Matches: 82, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
77 1 0.01
78 81 0.99
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (78 bp):
TTCATATTGATACATGTCCATTAGAGTCATTTAGATAAAAGCACATTAATACAAAGTCTCTAGGG
TTATGTGGGTACT
Found at i:572691 original size:13 final size:13
Alignment explanation
Indices: 572673--572700 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
572663 ATACATTTCT
572673 CATTGTATCAATA
1 CATTGTATCAATA
572686 CATTGTATCAATA
1 CATTGTATCAATA
572699 CA
1 CA
572701 GTACTCATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (13 bp):
CATTGTATCAATA
Found at i:572700 original size:33 final size:33
Alignment explanation
Indices: 572655--572722 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
572645 TTTTTACAAT
* * *
572655 TTGTATCGATACATTTCTCATTGTATCAATACA
1 TTGTATCAATACAGTACTCATTGTATCAATACA
*
572688 TTGTATCAATACAGTACTCATTGTATCGATACA
1 TTGTATCAATACAGTACTCATTGTATCAATACA
572721 TT
1 TT
572723 TTACAATGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (33 bp):
TTGTATCAATACAGTACTCATTGTATCAATACA
Found at i:575126 original size:51 final size:51
Alignment explanation
Indices: 575046--575244 Score: 213
Period size: 51 Copynumber: 3.9 Consensus size: 51
575036 ATTTTTCATC
* * *
575046 TCGGGGATACTTCAATCTCGGTTTCATTTCCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAATCTCGATTTTATTTCCAAAACATCAATTTTTCTTAA
* * * * * ** *
575097 TCGGGGATATTCCAA-CTCCGATTTTATTTCTAAAGCCTCGATTTACCATAA
1 TCGGGGATACTCCAATCT-CGATTTTATTTCCAAAACATCAATTTTTCTTAA
* * *
575148 CCGGGGATACTCCAATCTCGGTTTTATCTCCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAATCTCGATTTTATTTCCAAAACATCAATTTTTCTTAA
* * *
575199 TCAGGGATACTCCAA-CTCCGATTTTATTTCCAAAATACCAATTTTT
1 TCGGGGATACTCCAATCT-CGATTTTATTTCCAAAACATCAATTTTT
575245 TACAATTGGA
Statistics
Matches: 117, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
50 4 0.03
51 111 0.95
52 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.37
Consensus pattern (51 bp):
TCGGGGATACTCCAATCTCGATTTTATTTCCAAAACATCAATTTTTCTTAA
Found at i:575264 original size:102 final size:102
Alignment explanation
Indices: 575051--575242 Score: 269
Period size: 102 Copynumber: 1.9 Consensus size: 102
575041 TCATCTCGGG
* * * *
575051 GATACTTCAATCTCGGTTTCATTTCCAAAACATCAATTTTTCTTAATCGGGGATATTCCAACTCC
1 GATACTCCAATCTCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCAGGGATACTCCAACTCC
* * * * *
575116 GATTTTATTTCTAAAGCCTCGATTTACCATAACCGGG
66 GATTTTATTTCAAAAGACTCAATTTACCACAACCGGA
*
575153 GATACTCCAATCTCGGTTTTATCTCCAAAACATCAATTTTTCTTAATCAGGGATACTCCAACTCC
1 GATACTCCAATCTCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCAGGGATACTCCAACTCC
*
575218 GATTTTATTTCCAAAATAC-CAATTT
66 GATTTTATTT-CAAAAGACTCAATTT
575243 TTTACAATTG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 75 0.94
103 5 0.06
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (102 bp):
GATACTCCAATCTCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCAGGGATACTCCAACTCC
GATTTTATTTCAAAAGACTCAATTTACCACAACCGGA
Found at i:575281 original size:28 final size:28
Alignment explanation
Indices: 575249--575304 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
575239 ATTTTTTACA
575249 ATTGGAGATACTCCAACCCCGTCATTTC
1 ATTGGAGATACTCCAACCCCGTCATTTC
* * *
575277 ATTGGGGATACTCCAACCTCGTTATTTC
1 ATTGGAGATACTCCAACCCCGTCATTTC
575305 CGAGAGGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (28 bp):
ATTGGAGATACTCCAACCCCGTCATTTC
Found at i:575313 original size:28 final size:28
Alignment explanation
Indices: 575255--575323 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
575245 TACAATTGGA
** *
575255 GATACTCCAACCCCGTCATTTCATTGGG
1 GATACTCCAACCCCGTCATTTCAGAGAG
* * *
575283 GATACTCCAACCTCGTTATTTCCGAGAG
1 GATACTCCAACCCCGTCATTTCAGAGAG
575311 GATACTCCAACCC
1 GATACTCCAACCC
575324 TGGCTTTATA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (28 bp):
GATACTCCAACCCCGTCATTTCAGAGAG
Found at i:575442 original size:110 final size:108
Alignment explanation
Indices: 575202--575461 Score: 292
Period size: 110 Copynumber: 2.4 Consensus size: 108
575192 TTCTTAATCA
* *
575202 GGGATACTCCAACTCCGATTTTATTTCCAAAATACCAA-TTTTTTACAATTGGAGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAATACTAATTTTTTTACAATTGGAGATACTCCAAC
* ** *
575266 CCCGTCATTTCATTGGGGATACTCCAACCTCGTTATTTCCGAG
66 CCCGTCATGTCATCAGGGATACTCCAACCTCGTTATTTCCAAG
* * ** * * * * **
575309 AGGATACTCCAACCCTGGCTTTATATCCAAAATA-TAGATTTTTTTCATAATTAGGGGGTACTTT
1 GGGATACTCCAACCCCGATTTTATTTCCAAAATACTA-ATTTTTTT-ACAATT-GGAGATACTCC
* *
575373 AACCCTGTTATGTCATCAGGGATACTCCAATCC-CGTTATTTCCAAG
63 AACCCCGTCATGTCATCAGGGATACTCCAA-CCTCGTTATTTCCAAG
*
575419 GGGATACTCCAACCCCGATTTTATTTCTAAAATACTAATTTTT
1 GGGATACTCCAACCCCGATTTTATTTCCAAAATACTAATTTTT
575462 CACAATCAGG
Statistics
Matches: 123, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
106 1 0.01
107 29 0.24
108 6 0.05
109 5 0.04
110 78 0.63
111 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (108 bp):
GGGATACTCCAACCCCGATTTTATTTCCAAAATACTAATTTTTTTACAATTGGAGATACTCCAAC
CCCGTCATGTCATCAGGGATACTCCAACCTCGTTATTTCCAAG
Found at i:575488 original size:51 final size:51
Alignment explanation
Indices: 575419--575537 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
575409 TATTTCCAAG
* * * * * *
575419 GGGATACTCCAACCCCGATTTTATTTCTAAAATACTAATTTTTCACAATCA
1 GGGATACTTCAACCCCGATTTTAGTTCCAAAACACCAATTTCTCACAATCA
* *
575470 GGGATACTTCAACTCCGATTTTAGTTCCAAAACACCAATTTCTCACAATCG
1 GGGATACTTCAACCCCGATTTTAGTTCCAAAACACCAATTTCTCACAATCA
575521 GGGATACTTCAACCCCG
1 GGGATACTTCAACCCCG
575538 TTATTTTCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (51 bp):
GGGATACTTCAACCCCGATTTTAGTTCCAAAACACCAATTTCTCACAATCA
Found at i:577807 original size:12 final size:13
Alignment explanation
Indices: 577792--577841 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 13
577782 ACTGTGCAGC
577792 CAATTTTG-AATT
1 CAATTTTGAAATT
577804 CAA-TTTGAAATAGT
1 CAATTTTGAAAT--T
*
577818 TAATTTTGAAATT
1 CAATTTTGAAATT
577831 CAA-TTTGAAAT
1 CAATTTTGAAAT
577842 AGTAAAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
11 4 0.12
12 14 0.44
13 3 0.09
14 3 0.09
15 8 0.25
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (13 bp):
CAATTTTGAAATT
Found at i:577835 original size:27 final size:26
Alignment explanation
Indices: 577793--577844 Score: 95
Period size: 27 Copynumber: 2.0 Consensus size: 26
577783 CTGTGCAGCC
577793 AATTTTGAATTCAATTTGAAATAGTT
1 AATTTTGAATTCAATTTGAAATAGTT
577819 AATTTTGAAATTCAATTTGAAATAGT
1 AATTTTG-AATTCAATTTGAAATAGT
577845 AAAAGTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (26 bp):
AATTTTGAATTCAATTTGAAATAGTT
Found at i:577917 original size:9 final size:9
Alignment explanation
Indices: 577903--577935 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
577893 AGAAGGCTCA
577903 AGCAGAGAC
1 AGCAGAGAC
577912 AGCAGAGAC
1 AGCAGAGAC
*
577921 AGCAGAGAT
1 AGCAGAGAC
577930 AGCAGA
1 AGCAGA
577936 AAGAGAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.45, C:0.18, G:0.33, T:0.03
Consensus pattern (9 bp):
AGCAGAGAC
Found at i:582552 original size:14 final size:14
Alignment explanation
Indices: 582533--582560 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
582523 AAAAAAGGTT
582533 GGCGCAGCCAACAA
1 GGCGCAGCCAACAA
582547 GGCGCAGCCAACAA
1 GGCGCAGCCAACAA
582561 AGACTGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.29, T:0.00
Consensus pattern (14 bp):
GGCGCAGCCAACAA
Done.