Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold344
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1758742
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 5 of 11
Found at i:769961 original size:25 final size:26
Alignment explanation
Indices: 769924--769972 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
769914 CATTTTGGTT
*
769924 CTTTTTTTATCTT-TTTTCTTTCCTTC
1 CTTTTTCTATCTTCTTTT-TTTCCTTC
769950 CTTTTTCT-TCTTCTTTTTTTCCT
1 CTTTTTCTATCTTCTTTTTTTCCT
769973 CACTAATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.73
Consensus pattern (26 bp):
CTTTTTCTATCTTCTTTTTTTCCTTC
Found at i:773988 original size:20 final size:21
Alignment explanation
Indices: 773946--773992 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
773936 TTCTACAATT
*
773946 TGTATCGATACAATAAGTGAA
1 TGTATCGATACAATAAGTAAA
*
773967 TGTATCGATAC-GTAAGTAAA
1 TGTATCGATACAATAAGTAAA
773987 TGTATC
1 TGTATC
773993 AATAAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (21 bp):
TGTATCGATACAATAAGTAAA
Found at i:778112 original size:6 final size:6
Alignment explanation
Indices: 778091--778164 Score: 64
Period size: 6 Copynumber: 11.8 Consensus size: 6
778081 AGAAAGGAGA
778091 AAAATAG AAGAAAG AAAAAG AAAATAG AAAGAA- AAAAAG AAAAAG AAAGAGAG
1 AAAA-AG AA-AAAG AAAAAG AAAA-AG AAA-AAG AAAAAG AAAAAG AAA-A-AG
*
778144 AAAAAG --AAGG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAA
778165 AATGGCTTAA
Statistics
Matches: 57, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
4 3 0.05
5 2 0.04
6 30 0.53
7 14 0.25
8 8 0.14
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:778116 original size:20 final size:20
Alignment explanation
Indices: 778091--778151 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
778081 AGAAAGGAGA
778091 AAAATAGAAGAAAGAAAAAG
1 AAAATAGAAGAAAGAAAAAG
778111 AAAATAGAA-AGAA-AAAAAG
1 AAAATAGAAGA-AAGAAAAAG
*
778130 AAAA-AGAAAGAGAGAAAAAG
1 AAAATAG-AAGAAAGAAAAAG
778150 AA
1 AA
778152 GGAAAAAGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 2 0.06
19 14 0.39
20 20 0.56
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (20 bp):
AAAATAGAAGAAAGAAAAAG
Found at i:778123 original size:24 final size:24
Alignment explanation
Indices: 778096--778163 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
778086 GGAGAAAAAT
*
778096 AGAAGAAAGAAAAAGAAAATAGAA
1 AGAAGAAAGAAAAAGAAAAGAGAA
*
778120 AGAAAAAAAGAAAAAGAAAGAGAGAA
1 AG-AAGAAAGAAAAAGAAA-AGAGAA
*
778146 A-AAGAAGGAAAAAGAAAA
1 AGAAGAAAGAAAAAGAAAA
778164 AAATGGCTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
23 1 0.03
24 16 0.42
25 15 0.39
26 6 0.16
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.01
Consensus pattern (24 bp):
AGAAGAAAGAAAAAGAAAAGAGAA
Found at i:778129 original size:25 final size:24
Alignment explanation
Indices: 778101--778164 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 24
778091 AAAATAGAAG
778101 AAAGAAAAAGAAAATAGAAAGAAAA
1 AAAGAAAAAGAAAA-AGAAAGAAAA
*
778126 AAAGAAAAAG--AAAGAGAGAAAA
1 AAAGAAAAAGAAAAAGAAAGAAAA
778148 AGAAGGAAAAAGAAAAA
1 A-AA-GAAAAAGAAAAA
778165 AATGGCTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
22 10 0.29
23 4 0.12
24 7 0.21
25 10 0.29
26 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (24 bp):
AAAGAAAAAGAAAAAGAAAGAAAA
Found at i:778137 original size:18 final size:18
Alignment explanation
Indices: 778105--778166 Score: 72
Period size: 20 Copynumber: 3.3 Consensus size: 18
778095 TAGAAGAAAG
778105 AAAAAGAAAATAGAAAGAA
1 AAAAAGAAAA-AGAAAGAA
778124 AAAAAGAAAAAGAAAGAGA
1 AAAAAGAAAAAGAAAGA-A
*
778143 GAAAAAGAAGGAA-AAAGAA
1 -AAAAAGAA-AAAGAAAGAA
778162 AAAAA
1 AAAAA
778167 TGGCTTAAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
18 12 0.31
19 12 0.31
20 13 0.33
21 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (18 bp):
AAAAAGAAAAAGAAAGAA
Found at i:784752 original size:44 final size:43
Alignment explanation
Indices: 784684--784769 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 43
784674 GATAAAATCA
* * *
784684 TATCTTATTATAATTTTTTTAAACTAAAAATTAAAAAAATAAT
1 TATCTTAATATAAATTTTTAAAACTAAAAATTAAAAAAATAAT
* *
784727 TATCATTAATATAAATTTTTAAAACTAAAATTTAAACAAATAA
1 TATC-TTAATATAAATTTTTAAAACTAAAAATTAAAAAAATAA
784770 AAGTTTTGGA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 4 0.11
44 33 0.89
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (43 bp):
TATCTTAATATAAATTTTTAAAACTAAAAATTAAAAAAATAAT
Found at i:796404 original size:2 final size:2
Alignment explanation
Indices: 796397--796437 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
796387 AGATATGAGG
*
796397 TC TC TC TC TC TC AC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
796438 ACACACATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:797092 original size:20 final size:20
Alignment explanation
Indices: 797063--797101 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
797053 GATTACCATG
*
797063 TTTGATTTTAAATTTAATTA
1 TTTGAGTTTAAATTTAATTA
*
797083 TTTGAGTTTATATTTAATT
1 TTTGAGTTTAAATTTAATT
797102 TTAAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (20 bp):
TTTGAGTTTAAATTTAATTA
Found at i:800114 original size:12 final size:11
Alignment explanation
Indices: 800096--800147 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 11
800086 TAAACTCAAT
*
800096 TAAAAAATTTA
1 TAAAAAAATTA
800107 TAAAAAAA-TA
1 TAAAAAAATTA
800117 TAAATAAAATTA
1 TAAA-AAAATTA
800129 TTAAAATAAATATA
1 -TAAAA-AAAT-TA
800143 TAAAA
1 TAAAA
800148 TTAAATATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 6 0.17
11 11 0.31
12 3 0.09
13 13 0.37
14 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TAAAAAAATTA
Found at i:800134 original size:22 final size:22
Alignment explanation
Indices: 800099--800150 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
800089 ACTCAATTAA
800099 AAAATTTATAAAAA-AATATAAAT
1 AAAA-TTATAAAAATAA-ATAAAT
* *
800122 AAAATTATTAAAATAAATATAT
1 AAAATTATAAAAATAAATAAAT
800144 AAAATTA
1 AAAATTA
800151 AATATATCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATTATAAAAATAAATAAAT
Found at i:800152 original size:14 final size:13
Alignment explanation
Indices: 800100--800157 Score: 52
Period size: 14 Copynumber: 4.6 Consensus size: 13
800090 CTCAATTAAA
*
800100 AAATTTATAAAA-
1 AAATATATAAAAT
*
800112 AAATATA-AATA-
1 AAATATATAAAAT
800123 AAAT-TATTAAAAT
1 AAATATA-TAAAAT
800136 AAATATATAAAATT
1 AAATATATAAAA-T
800150 AAATATAT
1 AAATATAT
800158 CCATACCTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 2 0.05
11 7 0.18
12 9 0.24
13 9 0.24
14 11 0.29
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AAATATATAAAAT
Found at i:800920 original size:37 final size:37
Alignment explanation
Indices: 800876--800973 Score: 112
Period size: 37 Copynumber: 2.6 Consensus size: 37
800866 AATTATTTTG
800876 AAGTTTAAATCAATTGAGTTTAACACTT-AAATTAATT
1 AAGTTTAAATCAATTGAGTTTAACA-TTCAAATTAATT
* * *
800913 -AGATTTAAATCAATCGATTTTAGCATTCAAATTAATT
1 AAG-TTTAAATCAATTGAGTTTAACATTCAAATTAATT
*
800950 AAGTTTAGATCAATT-AGATTTAAC
1 AAGTTTAAATCAATTGAG-TTTAAC
800974 TTTTTCGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
36 5 0.10
37 43 0.86
38 2 0.04
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (37 bp):
AAGTTTAAATCAATTGAGTTTAACATTCAAATTAATT
Found at i:805498 original size:28 final size:28
Alignment explanation
Indices: 805458--805514 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
805448 ATTATAAAAC
805458 AGTCTTTATAAGTGTTTTCATGAACCAA
1 AGTCTTTATAAGTGTTTTCATGAACCAA
805486 AGTCTTTATAAGTGTTTTCATGAACCAA
1 AGTCTTTATAAGTGTTTTCATGAACCAA
805514 A
1 A
805515 ACAGCCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (28 bp):
AGTCTTTATAAGTGTTTTCATGAACCAA
Found at i:809111 original size:126 final size:127
Alignment explanation
Indices: 808981--809632 Score: 397
Period size: 126 Copynumber: 5.2 Consensus size: 127
808971 AAGGCAAAAA
* * *
808981 TATAATAGTAAAAAAGATGACAAGAGTGGAACCTTTTGTCAAAATGATTGAATAAGGCGAAACCA
1 TATAATAGTAAAAAAGATGACAAGAGTGGAACCTTTTGTCAAAAAGATTGACTAAGGCAAAACCA
* * * *
809046 TAATAGTCAAAGAGATTACCAGGACAAAACATTTAGTTGGAAAA-ATTGACTAGGGTGAAAC
66 TAATAGTCAAAGAGATGACTAGGACAAAACCTTTAGTCGGAAAACATTGACTAGGGTGAAAC
* * ** * *
809107 TATAATAGTCAAAGAGATGATTAG-G-GCGAAACTTTCTGTCAAAAAGATTGATTAAGGCAAAAC
1 TATAATAGTAAAAAAGATGACAAGAGTG-GAACCTTT-TGTCAAAAAGATTGACTAAGGCAAAAC
* * * * * * * * * ** *
809170 CATTATAGTTAAA-AGATAACTAGGATAGAACTTTTAATCAG-AAAGATT-ACTCAATGTGAAAA
64 CATAATAGTCAAAGAGATGACTAGGACAAAACCTTTAGTCGGAAAACATTGACT-AGGGTGAAAC
* * * * *
809232 TGTAATAGTTAAAGAGGTGATCAAG-GTGGAA-CTTTTAGTCAAAAAGATT-AGCCAAGGCAAAA
1 TATAATAGTAAAAAAGATGA-CAAGAGTGGAACCTTTT-GTCAAAAAGATTGA-CTAAGGCAAAA
* ** * * * **
809294 CCATAATAGTTAAAGAGATGACTACAATAAAACCTTTAGTC-GAAAAGATTGATTAGGGCAAAAC
63 CCATAATAGTCAAAGAGATGACTAGGACAAAACCTTTAGTCGGAAAACATTGACTAGGGTGAAAC
* * * * * ** * * * **
809358 CATAATAGTTAAAAAGGTGACTAAGA-CGAAACCTTCAGTTAAAAAGAATGACTAGGGTGAAA-C
1 TATAATAGTAAAAAAGATGAC-AAGAGTGGAACCTTTTGTCAAAAAGATTGACTAAGGCAAAACC
* * * * *
809421 ATAATAGCCAAAGA-AGTGACTAGGGCAAAACCTTTAGTCGAAAAACATTGATTAGGATGAAAGC
65 ATAATAGTCAAAGAGA-TGACTAGGACAAAACCTTTAGTCGGAAAACATTGACTAGGGTGAAA-C
* * * * * * *
809485 -ATAATAATAAAAAAAATGACTAAGA--GGAA-CTTTCAGTTGAAATA-ATTGACCAAGACAAAA
1 TATAATAGTAAAAAAGATGAC-AAGAGTGGAACCTTT-TG-TCAAAAAGATTGACTAAGGCAAAA
* * * *** * * *
809545 CCATAATAGTCAAATAGGTGATTAGGGTGAAACCTTTAGTC-AAAAAGATTGACTAGGGCGAAAC
63 CCATAATAGTCAAAGAGATGACTAGGACAAAACCTTTAGTCGGAAAACATTGACTAGGGTGAAAC
* * *
809609 CATAATAGTCAAAAAGGTGACAAG
1 TATAATAGTAAAAAAGATGACAAG
809633 CTTGAAACCT
Statistics
Matches: 410, Mismatches: 93, Indels: 48
0.74 0.17 0.09
Matches are distributed among these distances:
124 17 0.04
125 176 0.43
126 209 0.51
127 8 0.02
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (127 bp):
TATAATAGTAAAAAAGATGACAAGAGTGGAACCTTTTGTCAAAAAGATTGACTAAGGCAAAACCA
TAATAGTCAAAGAGATGACTAGGACAAAACCTTTAGTCGGAAAACATTGACTAGGGTGAAAC
Found at i:809275 original size:125 final size:125
Alignment explanation
Indices: 808977--809317 Score: 339
Period size: 125 Copynumber: 2.7 Consensus size: 125
808967 CCCTAAGGCA
* * *
808977 AAAATATAATAGTAAAAAAGATGA-CAAGAGTGGAACCTTTTGTCAAAATGATTGAATAAGGCGA
1 AAAATATAATAGTAAAAGAGATGATCAAG-GTGGAA-CTTTTGTCAAAAAGATTGAATAAGGCAA
* * * * ** *
809041 AACCATAATAGTCAAAGAGATTACCAGGACAAAACATTTAGTTGGAAAAATTGACTAGGGTG
64 AACCATAATAGTTAAAGAGATAACTAGGACAAAACATTTAATCAGAAAAATTGACTAAGGTG
* * * * * * *
809103 AAACTATAATAGTCAAAGAGATGATTAGGGCGAAACTTTCTGTCAAAAAGATTGATTAAGGCAAA
1 AAAATATAATAGTAAAAGAGATGATCAAGGTGGAACTTT-TGTCAAAAAGATTGAATAAGGCAAA
* * * * * *
809168 ACCATTATAGTTAAA-AGATAACTAGGATAGAACTTTTAATCAGAAAGATT-ACTCAATGTG
65 ACCATAATAGTTAAAGAGATAACTAGGACAAAACATTTAATCAGAAAAATTGACT-AAGGTG
* * * **
809228 AAAATGTAATAGTTAAAGAGGTGATCAAGGTGGAACTTTTAGTCAAAAAGATT-AGCCAAGGCAA
1 AAAATATAATAGTAAAAGAGATGATCAAGGTGGAACTTTT-GTCAAAAAGATTGA-ATAAGGCAA
*
809292 AACCATAATAGTTAAAGAGATGACTA
64 AACCATAATAGTTAAAGAGATAACTA
809318 CAATAAAACC
Statistics
Matches: 174, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
124 5 0.03
125 99 0.57
126 68 0.39
127 2 0.01
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (125 bp):
AAAATATAATAGTAAAAGAGATGATCAAGGTGGAACTTTTGTCAAAAAGATTGAATAAGGCAAAA
CCATAATAGTTAAAGAGATAACTAGGACAAAACATTTAATCAGAAAAATTGACTAAGGTG
Found at i:809639 original size:63 final size:63
Alignment explanation
Indices: 808982--809684 Score: 265
Period size: 63 Copynumber: 11.2 Consensus size: 63
808972 AGGCAAAAAT
* * * * * * * *
808982 ATAATAGTAAAAAAGATGACAAGAGTGGAACCTTTTGTCAAAATGATTGAATAAGGCGAAACC
1 ATAATAGTCAAAAAGGTGACAAGCGTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAAACC
* * * * ** * ** * *
809045 ATAATAGTCAAAGAGATTACCAG-GACAAAACATTTAGTTGGAAAA-ATTGACTAGGGTGAAACT
1 ATAATAGTCAAAAAGGTGACAAGCG-TGAAACCTTTAG-TCAAAAAGATTGACTAGGGCGAAACC
* * ** * * * * * *
809108 ATAATAGTCAAAGAGATGATTAGGGCGAAA-CTTTCTGTCAAAAAGATTGATTAAGGCAAAACC
1 ATAATAGTCAAAAAGGTGACAAGCGTGAAACCTTT-AGTCAAAAAGATTGACTAGGGCGAAACC
* * * * * * * * ** * *
809171 ATTATAGT-TAAAAGATAACTAG-GAT-AGAACTTTTAATCAGAAAGATT-ACTCAATGTGAAAA
1 ATAATAGTCAAAAAGGTGACAAGCG-TGA-AACCTTTAGTCAAAAAGATTGACT-AGGGCGAAAC
*
809232 T
63 C
* * * * * * * *
809233 GTAATAGTTAAAGAGGTGATCAAG-GTGGAACTTTTAGTCAAAAAGATT-AGCCAAGGCAAAACC
1 ATAATAGTCAAAAAGGTGA-CAAGCGTGAAACCTTTAGTCAAAAAGATTGA-CTAGGGCGAAACC
* * * * * * * * *
809296 ATAATAGTTAAAGAGATGACTA-CAATAAAACCTTTAGTCGAAAAGATTGATTAGGGCAAAACC
1 ATAATAGTCAAAAAGGTGACAAGC-GTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAAACC
* * * * *
809359 ATAATAGTTAAAAAGGTGACTAAGAC--GAAACCTTCAGTTAAAAAGAATGACTAGGGTGAAA-C
1 ATAATAGTCAAAAAGGTGAC-AAG-CGTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAAACC
* * * ** * * ** *
809421 ATAATAGCCAAAGAA-GTGACTAGGGCAAAACCTTTAGTCGAAAAACATTGATTAGGATGAAAGC
1 ATAATAGTCAAA-AAGGTGACAAGCGTGAAACCTTTAGTC-AAAAAGATTGACTAGGGCGAAACC
* * ** * * * * * * *
809485 ATAATAATAAAAAAAATGACTAAGAG-G-AA-CTTTCAGTTGAAATA-ATTGACCAAGACAAAAC
1 ATAATAGTCAAAAAGGTGAC-AAGCGTGAAACCTTT-AG-TCAAAAAGATTGACTAGGGCGAAAC
809546 C
63 C
* ** *
809547 ATAATAGTCAAATAGGTGATTAGGGTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAAACC
1 ATAATAGTCAAAAAGGTGACAAGCGTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAAACC
* * * * * *
809610 ATAATAGTCAAAAAGGTGACAAGCTTGAAACCTTCAATCGAAAAA-ATTGATTAGAGTGAAACC
1 ATAATAGTCAAAAAGGTGACAAGCGTGAAACCTTTAGTC-AAAAAGATTGACTAGGGCGAAACC
809673 ATAATAGTCAAA
1 ATAATAGTCAAA
809685 GAAATAACCA
Statistics
Matches: 474, Mismatches: 133, Indels: 66
0.70 0.20 0.10
Matches are distributed among these distances:
61 9 0.02
62 107 0.23
63 318 0.67
64 36 0.08
65 3 0.01
66 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.23
Consensus pattern (63 bp):
ATAATAGTCAAAAAGGTGACAAGCGTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAAACC
Found at i:809672 original size:126 final size:124
Alignment explanation
Indices: 809291--809687 Score: 370
Period size: 126 Copynumber: 3.2 Consensus size: 124
809281 AGCCAAGGCA
* **** * *
809291 AAACCATAATAGTTAAAG-AGATGACTACAATAAAACCTTTAGTCGAAAAGATTGATTAGGGCAA
1 AAACCATAATAGTCAAAGAAG-TGACTAGGGCAAAACCTTTAGTCAAAAAGATTGATTAGGGCGA
* * * *
809355 AACCATAATAGTTAAAAAGGTGACTAAGACGAAACCTTCAGTTAAAAAGAATGACTAGGGTG
65 AACCATAATAGTAAAAAAGGTGACTAAG-CGAAACCTTCAGTGAAAAA-ATTGACTAGAGTG
* * **
809417 AAA-CATAATAGCCAAAGAAGTGACTAGGGCAAAACCTTTAGTCGAAAAACATTGATTAGGATGA
1 AAACCATAATAGTCAAAGAAGTGACTAGGGCAAAACCTTTAGTC-AAAAAGATTGATTAGGGCGA
* * ** * * * * * **
809481 AAGCATAATAATAAAAAAAATGACTAAGAGGAACTTTCAGTTGAAATAATTGACCA-AGACA
65 AACCATAATAGTAAAAAAGGTGACTAAGCGAAACCTTCAG-TGAAAAAATTGACTAGAG-TG
* * * ** *
809542 AAACCATAATAGTCAAATAGGTGATTAGGGTGAAACCTTTAGTCAAAAAGATTGACTAGGGCGAA
1 AAACCATAATAGTCAAAGAAGTGACTAGGGCAAAACCTTTAGTCAAAAAGATTGATTAGGGCGAA
* * *
809607 ACCATAATAGTCAAAAAGGTGAC-AAGCTTGAAACCTTCAATCGAAAAAATTGATTAGAGTG
66 ACCATAATAGTAAAAAAGGTGACTAAGC--GAAACCTTCAGT-GAAAAAATTGACTAGAGTG
809668 AAACCATAATAGTCAAAGAA
1 AAACCATAATAGTCAAAGAA
809688 ATAACCAGAG
Statistics
Matches: 210, Mismatches: 52, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
124 4 0.02
125 85 0.40
126 119 0.57
127 2 0.01
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.22
Consensus pattern (124 bp):
AAACCATAATAGTCAAAGAAGTGACTAGGGCAAAACCTTTAGTCAAAAAGATTGATTAGGGCGAA
ACCATAATAGTAAAAAAGGTGACTAAGCGAAACCTTCAGTGAAAAAATTGACTAGAGTG
Found at i:809943 original size:29 final size:29
Alignment explanation
Indices: 809901--809963 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
809891 CTTTCGATCA
*
809901 AAAAAATGACTAAGGTAAAATCTCTAGTC
1 AAAAAATGACTAAGGTAAAACCTCTAGTC
*
809930 AAAAAATGACTAAGGTAAAACCTCTAGTT
1 AAAAAATGACTAAGGTAAAACCTCTAGTC
809959 AAAAA
1 AAAAA
809964 GATTGACCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.22
Consensus pattern (29 bp):
AAAAAATGACTAAGGTAAAACCTCTAGTC
Found at i:810197 original size:63 final size:64
Alignment explanation
Indices: 810104--810246 Score: 152
Period size: 63 Copynumber: 2.3 Consensus size: 64
810094 ACCAAGGCGG
* * * * *
810104 AACCATAATAGT-CAAAGAGATGACAAAAGTG-GAGCTTTCAGTTTGAAA-GATTGACCAAGATG
1 AACCATAATAGTAAAAAAAAATGACAAAAGTGAAAGCTTT--GTTTGAAATGATTGACCAAGATA
810166 A
64 A
* * *
810167 AACCATAATAGTAAAAAAAAATGAC-CAAGTGAAATCTTTGTTTGAAATGATTGACCAAGGTAA
1 AACCATAATAGTAAAAAAAAATGACAAAAGTGAAAGCTTTGTTTGAAATGATTGACCAAGATAA
*
810230 AATCAT-ATAGTAAAAAA
1 AACCATAATAGTAAAAAA
810247 GGTAATTAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
62 19 0.28
63 35 0.51
64 14 0.21
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.24
Consensus pattern (64 bp):
AACCATAATAGTAAAAAAAAATGACAAAAGTGAAAGCTTTGTTTGAAATGATTGACCAAGATAA
Found at i:810822 original size:60 final size:60
Alignment explanation
Indices: 810758--810955 Score: 193
Period size: 60 Copynumber: 3.3 Consensus size: 60
810748 AAATGTAATA
* * * *
810758 AGAAACCTAAATAATGAGTTAGGTGAAACCAAGACCTAATGAAATGACTTGGACGAAACC
1 AGAAACCTAAACAATGACTTAGGTGAAACCAAGACCTAATGAAATGGCTTGGATGAAACC
* * * * * * *
810818 AGAAACCTAAACAATGACTTAGATGAAACTAGGA-CTCAATGAAATGGCCTAGATAAAATC
1 AGAAACCTAAACAATGACTTAGGTGAAACCAAGACCT-AATGAAATGGCTTGGATGAAACC
* * * * * ** *
810878 AGAAACCTAAACAATAATTTAAGTGGAACCAAGACTTAAACAAATGGCTTGGATGAAACT
1 AGAAACCTAAACAATGACTTAGGTGAAACCAAGACCTAATGAAATGGCTTGGATGAAACC
*
810938 ACAAACCTAAA-AATGACT
1 AGAAACCTAAACAATGACT
810956 ATATAAATAA
Statistics
Matches: 107, Mismatches: 29, Indels: 5
0.76 0.21 0.04
Matches are distributed among these distances:
59 7 0.07
60 99 0.93
61 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.20
Consensus pattern (60 bp):
AGAAACCTAAACAATGACTTAGGTGAAACCAAGACCTAATGAAATGGCTTGGATGAAACC
Found at i:810834 original size:30 final size:29
Alignment explanation
Indices: 810758--810846 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 29
810748 AAATGTAATA
*
810758 AGAAACCTAAATAATGAGTTAGG-TGAAACC
1 AGAAACCTAAA-AATGACTT-GGATGAAACC
* *
810788 A-AGACCTAATGAAATGACTTGGACGAAACC
1 AGAAACCTAA--AAATGACTTGGATGAAACC
*
810818 AGAAACCTAAACAATGACTTAGATGAAAC
1 AGAAACCTAAA-AATGACTTGGATGAAAC
810847 TAGGACTCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
29 10 0.21
30 30 0.62
31 8 0.17
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (29 bp):
AGAAACCTAAAAATGACTTGGATGAAACC
Found at i:812595 original size:16 final size:16
Alignment explanation
Indices: 812523--812587 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
812513 GCTAGTGTAT
812523 AAATATAATAAT-ATT-
1 AAATATAA-AATAATTA
*
812538 AAATATAAATATACATGA
1 AAATATAAA-ATA-ATTA
*
812556 CATATATAAAATAATTA
1 -AAATATAAAATAATTA
*
812573 AAATATAATATAATT
1 AAATATAAAATAATT
812588 TTAATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 1 0.03
15 10 0.25
16 13 0.32
17 5 0.12
18 3 0.08
19 8 0.20
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (16 bp):
AAATATAAAATAATTA
Found at i:817273 original size:15 final size:16
Alignment explanation
Indices: 817241--817273 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
817231 TTTTATATTG
817241 ATTTTATGTATTTAAA
1 ATTTTATGTATTTAAA
*
817257 ATTTTAT-TATTTTAA
1 ATTTTATGTATTTAAA
817272 AT
1 AT
817274 ATATTAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
ATTTTATGTATTTAAA
Found at i:818126 original size:14 final size:16
Alignment explanation
Indices: 818107--818139 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
818097 TTGAAATAAT
818107 TTTAAA-TATTT-TTA
1 TTTAAATTATTTATTA
818121 TTTAAATTATTTATTA
1 TTTAAATTATTTATTA
818137 TTT
1 TTT
818140 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTAAATTATTTATTA
Found at i:818141 original size:22 final size:20
Alignment explanation
Indices: 818113--818155 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 20
818103 TAATTTTAAA
818113 TATTTTTATTTAAATTATTTAT
1 TATTTTTATTTAAA--ATTTAT
818135 TATTTTTATTTAAAATTTAT
1 TATTTTTATTTAAAATTTAT
818155 T
1 T
818156 GAGGTGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.33
22 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTTTATTTAAAATTTAT
Found at i:819432 original size:16 final size:16
Alignment explanation
Indices: 819411--819452 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
819401 ATAACATAAT
*
819411 TATTTAATTTATTAAA
1 TATTTAATTTATAAAA
*
819427 TATTTATTTTATAAAA
1 TATTTAATTTATAAAA
*
819443 TAATTAATTT
1 TATTTAATTT
819453 TAATTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTTAATTTATAAAA
Found at i:819570 original size:20 final size:21
Alignment explanation
Indices: 819537--819576 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
819527 AAATAAAAAA
819537 TTATTTTAAAAAAT-TTTAAT
1 TTATTTTAAAAAATATTTAAT
**
819557 TTATTTTATTAAATATTTAA
1 TTATTTTAAAAAATATTTAA
819577 ATTTTATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATTTTAAAAAATATTTAAT
Found at i:819614 original size:33 final size:31
Alignment explanation
Indices: 819555--819654 Score: 98
Period size: 33 Copynumber: 3.2 Consensus size: 31
819545 AAAAATTTTA
* *
819555 ATTTATTTTATTAAAT-ATTTAAATTTTATAAT
1 ATTTATTTTATTAAATAAATT--ATTTTATTAT
*
819587 ATTTTATTTTATTAAATAAAATTATTTTATTTT
1 A-TTTATTTTATTAAAT-AAATTATTTTATTAT
*
819620 ATTT-TTTTATAAAAT-AATTATTTTATTAT
1 ATTTATTTTATTAAATAAATTATTTTATTAT
819649 AATTTA
1 -ATTTA
819655 ATCACATTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
29 13 0.22
30 4 0.07
31 10 0.17
32 4 0.07
33 24 0.41
35 3 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (31 bp):
ATTTATTTTATTAAATAAATTATTTTATTAT
Found at i:819619 original size:38 final size:37
Alignment explanation
Indices: 819537--819621 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 37
819527 AAATAAAAAA
* ** *
819537 TTATTTTAAAAAATTTTAATTTATTTTATTAAATATT
1 TTATTTTATAAAATTTTAATTTATTAAATAAAATATT
* * *
819574 TAAATTTTATAATATTTTATTTTATTAAATAAAATTATT
1 T-TATTTTATAAAATTTTAATTTATTAAATAAAA-TATT
819613 TTATTTTAT
1 TTATTTTAT
819622 TTTTTTATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
37 1 0.03
38 32 0.84
39 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (37 bp):
TTATTTTATAAAATTTTAATTTATTAAATAAAATATT
Found at i:819978 original size:20 final size:18
Alignment explanation
Indices: 819927--819997 Score: 56
Period size: 17 Copynumber: 3.9 Consensus size: 18
819917 TTATATTTAC
* *
819927 ATAATTATAATTTTTATAT
1 ATAATT-TAATTATTATAA
* *
819946 TTATTTTAA-TATTATCATA
1 ATAATTTAATTATTAT-A-A
819965 ATAATTTAATTATTA-AA
1 ATAATTTAATTATTATAA
*
819982 ATAATTTTATTATTAT
1 ATAATTTAATTATTAT
819998 GATGATGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
17 20 0.49
18 5 0.12
19 11 0.27
20 5 0.12
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (18 bp):
ATAATTTAATTATTATAA
Found at i:819995 original size:17 final size:17
Alignment explanation
Indices: 819964--819996 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
819954 ATATTATCAT
819964 AATAATTTAATTATTAA
1 AATAATTTAATTATTAA
*
819981 AATAATTTTATTATTA
1 AATAATTTAATTATTA
819997 TGATGATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AATAATTTAATTATTAA
Found at i:820989 original size:16 final size:15
Alignment explanation
Indices: 820953--820994 Score: 68
Period size: 14 Copynumber: 2.8 Consensus size: 15
820943 AAATTTAAAA
820953 TTAAAAATAATTTTT
1 TTAAAAATAATTTTT
820968 TT-AAAATAATTTTT
1 TTAAAAATAATTTTT
820982 TTAAAAAATAATT
1 TT-AAAAATAATT
820995 AATTAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 14 0.56
15 2 0.08
16 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAAAATAATTTTT
Found at i:822908 original size:13 final size:13
Alignment explanation
Indices: 822890--822936 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
822880 AAAGGGTCAT
822890 TTTTATTATTTTA
1 TTTTATTATTTTA
* *
822903 TTTTATTTTTTTG
1 TTTTATTATTTTA
*
822916 TTTTATT-TTATA
1 TTTTATTATTTTA
822928 TTTTTATTA
1 -TTTTATTA
822937 AAAAAATCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
12 3 0.11
13 25 0.89
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:822919 original size:18 final size:18
Alignment explanation
Indices: 822888--822935 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
822878 TAAAAGGGTC
822888 ATTTTTATTATTTTATTTT
1 ATTTTT-TTATTTTATTTT
*
822907 ATTTTTTTGTTTTATTTT
1 ATTTTTTTATTTTATTTT
*
822925 ATATTTTTATT
1 ATTTTTTTATT
822936 AAAAAAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (18 bp):
ATTTTTTTATTTTATTTT
Found at i:823051 original size:14 final size:14
Alignment explanation
Indices: 823032--823072 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
823022 TTTTCTTTAA
823032 AAAAATAAAAAATT
1 AAAAATAAAAAATT
*
823046 AAAAATTAAAAATT
1 AAAAATAAAAAATT
**
823060 AAATTTAAAAAAT
1 AAAAATAAAAAAT
823073 CGAATCTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAATAAAAAATT
Found at i:823710 original size:28 final size:27
Alignment explanation
Indices: 823679--823733 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
823669 TTAATTTCCA
823679 GATTGCAATGTCTTTTTTTTTT-TTTTTG
1 GATTGCAAT-T-TTTTTTTTTTGTTTTTG
**
823707 GATTTTAATTTTTTTTTTTTGTTTTTG
1 GATTGCAATTTTTTTTTTTTGTTTTTG
823734 TATAATTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.42
27 7 0.29
28 7 0.29
ACGTcount: A:0.11, C:0.04, G:0.13, T:0.73
Consensus pattern (27 bp):
GATTGCAATTTTTTTTTTTTGTTTTTG
Found at i:824142 original size:27 final size:27
Alignment explanation
Indices: 824079--824130 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
824069 TATTCATGGT
* *
824079 TTTTGCTTATTCATATATTTTATTACC
1 TTTTACTTATTCATATATTCTATTACC
*
824106 TTTTATTTATTCATATATTCTATTA
1 TTTTACTTATTCATATATTCTATTA
824131 TTTATTACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTTACTTATTCATATATTCTATTACC
Found at i:829403 original size:18 final size:19
Alignment explanation
Indices: 829380--829418 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
829370 ATTTTAATTA
829380 TTTAATAGAAATAT-TATT
1 TTTAATAGAAATATATATT
*
829398 TTTAATATAAATATATATT
1 TTTAATAGAAATATATATT
829417 TT
1 TT
829419 ATTTTTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTAATAGAAATATATATT
Found at i:829432 original size:28 final size:26
Alignment explanation
Indices: 829393--829474 Score: 70
Period size: 25 Copynumber: 3.3 Consensus size: 26
829383 AATAGAAATA
829393 TTATTTTT--AATATAAATATATATT
1 TTATTTTTAAAATATAAATATATATT
829417 TTATTTTTACTAAATAT-AAT-T-TATT
1 TTATTTTTA--AAATATAAATATATATT
*
829442 ATTATTATTTAACATA-AAATATAT-TT
1 -TTATT-TTTAAAATATAAATATATATT
829468 TTATTTT
1 TTATTTT
829475 ATTTTATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 18
0.72 0.01 0.27
Matches are distributed among these distances:
24 10 0.21
25 16 0.33
26 9 0.19
27 8 0.17
28 5 0.10
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (26 bp):
TTATTTTTAAAATATAAATATATATT
Found at i:829480 original size:28 final size:28
Alignment explanation
Indices: 829413--829480 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 28
829403 TATAAATATA
*
829413 TATTTTATTTTTACTAAATATAATTTAT
1 TATTTTATTTTAACTAAATATAATTTAT
829441 TATTATTA-TTTAACATAAA-ATATATTT-T
1 TATT-TTATTTTAAC-TAAATATA-ATTTAT
829469 TATTTTATTTTA
1 TATTTTATTTTA
829481 TTTTATTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 3 0.09
28 21 0.60
29 11 0.31
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
TATTTTATTTTAACTAAATATAATTTAT
Found at i:829598 original size:90 final size:88
Alignment explanation
Indices: 829393--829603 Score: 213
Period size: 90 Copynumber: 2.4 Consensus size: 88
829383 AATAGAAATA
* * * * *
829393 TTATTTTTAATATAAATAT-ATATTTTA-TTTTT-ACTAAATATAATTTATTATTATTATTTAAC
1 TTATTTTTAATTTAAATATAAAATTTAATTTTTTAACTAAATATAATCTATTATTATTATTCAAC
*
829455 ATAAAATATATTTTTATTTTATT
66 ATAAAATATAATTTTATTTTATT
*
829478 TTA-TTTT-ATTATAAATATAAATTTAATAATTTTTTAACATAAATAT-ATCTATTAATTATTAT
1 TTATTTTTAATT-TAAATATAAAATT--TAATTTTTTAAC-TAAATATAATCTATT-ATTATTAT
*
829540 TCAGA-AT-AAATATAATTTTGTTTATATT
61 TCA-ACATAAAATATAATTTTATTT-TATT
*
829568 TTATTATTTAATTTAAATATAAAATTTAATTATTTA
1 TTATT-TTTAATTTAAATATAAAATTTAATTTTTTA
829604 TTGTACACAT
Statistics
Matches: 103, Mismatches: 10, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
83 2 0.02
84 11 0.11
85 6 0.06
87 2 0.02
88 5 0.05
89 22 0.21
90 35 0.34
91 2 0.02
92 15 0.15
93 3 0.03
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (88 bp):
TTATTTTTAATTTAAATATAAAATTTAATTTTTTAACTAAATATAATCTATTATTATTATTCAAC
ATAAAATATAATTTTATTTTATT
Found at i:829743 original size:21 final size:20
Alignment explanation
Indices: 829697--829759 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
829687 ATACGTTTTT
*
829697 TATTATTAAT-TTTAATATTA
1 TATTA-TAATATTTAATCTTA
829717 TCATTATAATATTTAATCTTA
1 T-ATTATAATATTTAATCTTA
*
829738 CTATTA-AAGTAATTAATCTTA
1 -TATTATAA-TATTTAATCTTA
829759 T
1 T
829760 CAGTATCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
20 8 0.22
21 28 0.76
22 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (20 bp):
TATTATAATATTTAATCTTA
Found at i:830159 original size:112 final size:111
Alignment explanation
Indices: 829962--830179 Score: 337
Period size: 112 Copynumber: 2.0 Consensus size: 111
829952 TGTTTCCTTC
*
829962 TTTATAATTGATCAGCACATTAAATAAAATTAAAGCTATTCAAAAGTTTATGAATCTGAATATTA
1 TTTATAATCGATCAGCACATTAAATAAAATTAAAGCTATTCAAAAGTTTATGAATCTGAATATTA
* *
830027 AATAAAATTAAAACTGTTTTTTTCCTCGTAGCACTTTCAATGACATT
66 AATAAAATTAAAACT-ATTTTTTCCTCATAGCACTTTCAATGACATT
* * * * * *
830074 TTTATAATCGGTCAGTATATTAAATAAAATTAAAGCTGTTCAATAGTTTATGAATCTGTATATTA
1 TTTATAATCGATCAGCACATTAAATAAAATTAAAGCTATTCAAAAGTTTATGAATCTGAATATTA
*
830139 AATAAAATTAAAGCTATTTTTTCCTCATAGCACTTTCAATG
66 AATAAAATTAAAACTATTTTTTCCTCATAGCACTTTCAATG
830180 GCGATTCCAC
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
111 24 0.25
112 72 0.75
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (111 bp):
TTTATAATCGATCAGCACATTAAATAAAATTAAAGCTATTCAAAAGTTTATGAATCTGAATATTA
AATAAAATTAAAACTATTTTTTCCTCATAGCACTTTCAATGACATT
Found at i:831347 original size:20 final size:22
Alignment explanation
Indices: 831322--831362 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
831312 CAACATATAA
831322 TCAAATAATTA-A-AAATTAAC
1 TCAAATAATTATATAAATTAAC
831342 TCAAATAATTATATAAATTAA
1 TCAAATAATTATATAAATTAA
831363 TTAAACTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 1 0.05
22 7 0.37
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (22 bp):
TCAAATAATTATATAAATTAAC
Found at i:836197 original size:27 final size:27
Alignment explanation
Indices: 836159--836211 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
836149 ATGAGCCACC
836159 GGAAGAAGTATCAGAATTATGTGGACT
1 GGAAGAAGTATCAGAATTATGTGGACT
836186 GGAAGAAGTATCAGAATTATGTGGAC
1 GGAAGAAGTATCAGAATTATGTGGAC
836212 CAACAGAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.30, T:0.25
Consensus pattern (27 bp):
GGAAGAAGTATCAGAATTATGTGGACT
Found at i:836219 original size:27 final size:27
Alignment explanation
Indices: 836161--836237 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
836151 GAGCCACCGG
**
836161 AAGAAGTATCAGAATTATGTGGACTGG
1 AAGAAGTATCAGAATTATGTGGACTCA
836188 AAGAAGTATCAGAATTATGTGGAC-CA
1 AAGAAGTATCAGAATTATGTGGACTCA
*
836214 ACAGAAGT-TCCAGAAGTATGTGGA
1 A-AGAAGTAT-CAGAATTATGTGGA
836238 ATAGCACATG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.23
Consensus pattern (27 bp):
AAGAAGTATCAGAATTATGTGGACTCA
Found at i:837183 original size:34 final size:34
Alignment explanation
Indices: 837119--837301 Score: 260
Period size: 34 Copynumber: 5.4 Consensus size: 34
837109 CCTCGATTTA
* *
837119 TGTTGATTAAAT-GGTGATTTGGTAGTTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* *
837152 TGTTGACTAAATGGGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
837186 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* * * *
837220 TATTGATTAAATGGGTGATTTGGTGGTTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* * *
837254 TGTTGACTAAATGGGAGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
837288 TGTTGATTAAATGG
1 TGTTGATTAAATGG
837302 TGGTTTTTAC
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 11 0.08
34 121 0.92
ACGTcount: A:0.26, C:0.08, G:0.27, T:0.40
Consensus pattern (34 bp):
TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
Found at i:837665 original size:19 final size:19
Alignment explanation
Indices: 837609--837671 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
837599 TGGTTGTCGA
**
837609 GGTACTATTCACGTATATA
1 GGTACTATTCACGTATACG
*
837628 GGTACTATTTACGTATACG
1 GGTACTATTCACGTATACG
*
837647 GGTACTATTCAAGTATACG
1 GGTACTATTCACGTATACG
*
837666 GTTACT
1 GGTACT
837672 GTACACGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (19 bp):
GGTACTATTCACGTATACG
Found at i:841803 original size:34 final size:34
Alignment explanation
Indices: 841737--841921 Score: 264
Period size: 34 Copynumber: 5.5 Consensus size: 34
841727 AAGTGGGAGA
* *
841737 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* *
841770 ATTGTTGACTAAATGGGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
841804 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
841838 ATTATTGATTAAATGGGTGATTTGGTGGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * *
841872 ATTGTTGACTAAATGGGAGATTTGGTAGGTTGCC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
841906 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
841922 TGGTTTTTAC
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 13 0.10
34 121 0.90
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.40
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
Found at i:842681 original size:57 final size:58
Alignment explanation
Indices: 842613--842730 Score: 193
Period size: 57 Copynumber: 2.1 Consensus size: 58
842603 ATGATAAATT
* * * *
842613 TTTAATTTATTTATAAAATTAAAAATTTTTTACTATCATATCTGAAATATTAATC-TA
1 TTTAATTTATTTATAAAATTAAAAAATTTTTACTATCACATATAAAATATTAATCATA
842670 TTTAATTTATTTATAAAATTAAAAAATTTTTACTATCACATATAAAATATTAATCATA
1 TTTAATTTATTTATAAAATTAAAAAATTTTTACTATCACATATAAAATATTAATCATA
842728 TTT
1 TTT
842731 TATTAGATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
57 51 0.91
58 5 0.09
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (58 bp):
TTTAATTTATTTATAAAATTAAAAAATTTTTACTATCACATATAAAATATTAATCATA
Found at i:843105 original size:15 final size:17
Alignment explanation
Indices: 843055--843107 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 17
843045 TAATAATTTA
*
843055 TATTATAAATTAAGTTATT
1 TATTATAAAAT-A-TTATT
843074 T-TT-TAAAATATTATT
1 TATTATAAAATATTATT
843089 TATTATAAAA-ATT-TT
1 TATTATAAAATATTATT
843104 TATT
1 TATT
843108 TCTATTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
15 12 0.39
16 6 0.19
17 10 0.32
18 2 0.06
19 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TATTATAAAATATTATT
Found at i:843131 original size:29 final size:28
Alignment explanation
Indices: 843082--843137 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
843072 TTTTTTAAAA
* *
843082 TATTATTTATTATAAAAATTTTTATTTC
1 TATTAATTATTATAAAAATTTTCATTTC
843110 TATTAATT-TTATAAAATTATTTTCATTT
1 TATTAATTATTATAAAA--ATTTTCATTT
843138 TTTAAGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 7 0.29
29 9 0.38
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTAATTATTATAAAAATTTTCATTTC
Found at i:843132 original size:28 final size:29
Alignment explanation
Indices: 843082--843137 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
843072 TTTTTTAAAA
*
843082 TATTATTTATTATAAAAATTTTT-ATTTC
1 TATTAATTATTATAAAAATTTTTCATTTC
*
843110 TATTAATT-TTATAAAATTATTTTCATTT
1 TATTAATTATTATAAAAAT-TTTTCATTT
843138 TTTAAGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 9 0.38
28 11 0.46
29 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (29 bp):
TATTAATTATTATAAAAATTTTTCATTTC
Found at i:843142 original size:27 final size:28
Alignment explanation
Indices: 843091--843147 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
843081 ATATTATTTA
*
843091 TTATAAAAATTTTTATTTCTATTAA-TT
1 TTATAAAAATTTTCATTTCTATTAAGTT
843118 TTATAAAATTATTTTCATTT-T-TTAAGTT
1 TTATAAAA--ATTTTCATTTCTATTAAGTT
843146 TT
1 TT
843148 CTCTTTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 12 0.46
28 5 0.19
29 9 0.35
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (28 bp):
TTATAAAAATTTTCATTTCTATTAAGTT
Found at i:843380 original size:17 final size:18
Alignment explanation
Indices: 843342--843395 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
843332 AATGTAAATA
843342 AAATT-TTTATATTTTAT
1 AAATTATTTATATTTTAT
843359 AAATTATTTA-ATTTTA-
1 AAATTATTTATATTTTAT
*
843375 ATAATTAATTTATATTATAT
1 A-AATT-ATTTATATTTTAT
843395 A
1 A
843396 TAAAGTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 1 0.03
17 15 0.48
18 9 0.29
19 5 0.16
20 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AAATTATTTATATTTTAT
Found at i:843724 original size:15 final size:15
Alignment explanation
Indices: 843704--843736 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
843694 TTATTTATAA
843704 AAAAGAGAAAA-GAAG
1 AAAAGA-AAAAGGAAG
843719 AAAAGAAAAAGGAAG
1 AAAAGAAAAAGGAAG
843734 AAA
1 AAA
843737 TAAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAGGAAG
Found at i:846149 original size:3 final size:3
Alignment explanation
Indices: 846141--846180 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
846131 GTTCCAAAAT
846141 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
846181 AAGGATGGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:846760 original size:87 final size:87
Alignment explanation
Indices: 846604--846781 Score: 302
Period size: 87 Copynumber: 2.0 Consensus size: 87
846594 CACCACGAAC
* *
846604 CAAATCAGCACAAACTATCAACCAAACACAAATACATTAGACTAACCAATACAAAGTGATTCAAT
1 CAAAGCAGCACAAACTATCAACCAAACACAAATACATAAGACTAACCAATACAAAGTGATTCAAT
846669 TGAATCCATATCATTAATCAAA
66 TGAATCCATATCATTAATCAAA
* * * *
846691 CAAAGCAGCGCAAACTATCAATCAAACAGAAATACATAAGACTAACCAATACCAAGTGATTCAAT
1 CAAAGCAGCACAAACTATCAACCAAACACAAATACATAAGACTAACCAATACAAAGTGATTCAAT
846756 TGAATCCATATCATTAATCAAA
66 TGAATCCATATCATTAATCAAA
846778 CAAA
1 CAAA
846782 AGTCCTGTCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.49, C:0.22, G:0.07, T:0.21
Consensus pattern (87 bp):
CAAAGCAGCACAAACTATCAACCAAACACAAATACATAAGACTAACCAATACAAAGTGATTCAAT
TGAATCCATATCATTAATCAAA
Found at i:847508 original size:3 final size:3
Alignment explanation
Indices: 847500--847539 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
847490 ATCAAAATAC
847500 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
847540 GAAAAGCGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:849346 original size:157 final size:156
Alignment explanation
Indices: 849091--849374 Score: 550
Period size: 157 Copynumber: 1.8 Consensus size: 156
849081 TGGTGTTTGT
849091 GAAATTATAGCACAAGCGAAATACAAATGAGCTTTCAAAGAATAATAATAATGAAATAAAAGCTC
1 GAAATTATAGCACAAGCGAAATACAAATGAGCTTTCAAAGAATAATAATAATGAAATAAAAGCTC
849156 TTTGAAATGTAGAATGATAAAACTTTGATTGCTTGGTTTTCTTGGTAGTTCTTGTTAGTTTTCAA
66 TTTGAAATGTAGAATGATAAAACTTTGATTGCTTGGTTTTCTTGGTAGTTCTTGTTAGTTTTCAA
849221 AGATAAAAGCTCTTTGTAGAATGATA
131 AGATAAAAGCTCTTTGTAGAATGATA
849247 GAAATTATAAGCACAAGCGAAATACAAATGAGCTTTCAAAGAATAATAATAATGAAATAAAAGCT
1 GAAATTAT-AGCACAAGCGAAATACAAATGAGCTTTCAAAGAATAATAATAATGAAATAAAAGCT
*
849312 CTTTGAAATGTAGAATGATAAAACTTTGATTGCTTGGTTTTCTTGGTATTTCTTGTTAGTTTT
65 CTTTGAAATGTAGAATGATAAAACTTTGATTGCTTGGTTTTCTTGGTAGTTCTTGTTAGTTTT
849375 TTTTATCTTT
Statistics
Matches: 126, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
156 8 0.06
157 118 0.94
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (156 bp):
GAAATTATAGCACAAGCGAAATACAAATGAGCTTTCAAAGAATAATAATAATGAAATAAAAGCTC
TTTGAAATGTAGAATGATAAAACTTTGATTGCTTGGTTTTCTTGGTAGTTCTTGTTAGTTTTCAA
AGATAAAAGCTCTTTGTAGAATGATA
Found at i:849857 original size:23 final size:23
Alignment explanation
Indices: 849820--849864 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
849810 ACTTTGAATT
*
849820 ATTTTTACTT-GAAAAACATTTG
1 ATTTTTACTTAAAAAAACATTTG
849842 ATTTATTACTTAAAAAAACATTT
1 ATTT-TTACTTAAAAAAACATTT
849865 AAACTTATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.44
Consensus pattern (23 bp):
ATTTTTACTTAAAAAAACATTTG
Found at i:852705 original size:13 final size:13
Alignment explanation
Indices: 852687--852711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
852677 ACATAAGTGT
852687 TGTATCGATACAA
1 TGTATCGATACAA
852700 TGTATCGATACA
1 TGTATCGATACA
852712 TAAGTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:852710 original size:32 final size:32
Alignment explanation
Indices: 852666--852738 Score: 112
Period size: 32 Copynumber: 2.3 Consensus size: 32
852656 ATAAACAGAA
*
852666 AATGTATTGATACATAAGTGT-TGTATCGATAC
1 AATGTATCGATACATAAGT-TATGTATCGATAC
*
852698 AATGTATCGATACATAAGTTATGTATTGATAC
1 AATGTATCGATACATAAGTTATGTATCGATAC
852730 AATGTATCG
1 AATGTATCG
852739 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 1 0.03
32 37 0.97
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.37
Consensus pattern (32 bp):
AATGTATCGATACATAAGTTATGTATCGATAC
Found at i:855301 original size:52 final size:52
Alignment explanation
Indices: 855172--855515 Score: 227
Period size: 51 Copynumber: 6.6 Consensus size: 52
855162 TTAAGTTTCT
* * *
855172 CAATTGTTCATAATCGGGGATACTCCAACCCCGATTTTATTTC-CAAAATAT
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTCAAAACAC
* * * * *
855223 TAATTTCTCATGATCGGGGATACTCCAACTCCGATTTTATTTCTAAAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTCAAAACAC
* * * * * *
855275 TAATTTTTCACAATCGAGGATACTCCAA--CC--TTGTTATTTCATCGGGGATACTC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATT-TTATTTC-TC---AAAACAC
** * * **** ** * *
855328 CAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTC-CAAAATAT
1 CAA---TTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTCAAAACAC
** * *
855382 TGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTCAAAACAC
* * *
855433 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAACAC
1 CAATTTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTC-AAAACAC
* *
855486 CAATTTTTCACAATCGAGGATACTCCAACC
1 CAATTTTTCATAATCGGGGATACTCCAACC
855516 TCGTTATTTC
Statistics
Matches: 217, Mismatches: 59, Indels: 33
0.70 0.19 0.11
Matches are distributed among these distances:
48 2 0.01
49 7 0.03
50 3 0.01
51 78 0.36
52 77 0.35
53 21 0.10
54 3 0.01
56 15 0.07
57 1 0.00
58 2 0.01
59 7 0.03
60 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTCAAAACAC
Found at i:855338 original size:28 final size:28
Alignment explanation
Indices: 855287--855363 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
855277 ATTTTTCACA
* ** **
855287 ATCGAGGATACTCCAACCTTGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACCTC
855315 ATCGGGGATACTCCAACCCCGTTACCTC
1 ATCGGGGATACTCCAACCCCGTTACCTC
***
855343 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
855364 GCTTTATTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACCTC
Found at i:855489 original size:53 final size:51
Alignment explanation
Indices: 855172--855515 Score: 203
Period size: 52 Copynumber: 6.6 Consensus size: 51
855162 TTAAGTTTCT
* *
855172 CAATTGTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAATAT
1 CAATT-TTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * * *
855223 TAA-TTTCTCATGATCGGGGATACTCCAACTCCGATTTTATTTCTAAAAACAC
1 CAATTTTC-CATAATCGGGGATACTCCAACCCCGATTTTATTTC-CAAAACAC
* * * * ** * ***** * *
855275 TAATTTTTCACAATCGAGGATACTCCAACCTTGTTATTTCATCGGGGATACTC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCG--ATTTTATTTCCAAAACAC
** * * ** * *
855328 CAA--CCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATAT
1 CAATTTTCC-ATA-AT-C--GGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
** * *
855382 TGA-TTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTC-CATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* *
855433 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACAC
* * *
855486 CAATTTTTCACAATCGAGGATACTCCAACC
1 CAATTTTCCATAATCGGGGATACTCCAACC
855516 TCGTTATTTC
Statistics
Matches: 213, Mismatches: 64, Indels: 31
0.69 0.21 0.10
Matches are distributed among these distances:
49 2 0.01
50 1 0.00
51 70 0.33
52 80 0.38
53 26 0.12
54 15 0.07
55 3 0.01
56 16 0.08
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
Found at i:855542 original size:211 final size:210
Alignment explanation
Indices: 855179--855623 Score: 739
Period size: 211 Copynumber: 2.1 Consensus size: 210
855169 TCTCAATTGT
* ** *
855179 TCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAATATTAATTTCTCATGATCGGGGAT
1 TCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCTCATAATCGGGGAT
* * *
855244 ACTCCAACTCCGATTTTATTTCTAAAAACACTAATTTTTCACAATCGAGGATACTCCAACCTTGT
66 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGT
* *
855309 TATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTC
131 TATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGACTTTATTTC
855374 CAAAATATTGATTTC
196 CAAAATATTGATTTC
* * *
855389 TCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTT-TCCTTTAATCGGGG
1 TCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCT-C-ATAATCGGGG
855453 ATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTC
64 ATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTC
*
855518 GTTATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCTCGACTTTATT
129 GTTATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGACTTTATT
855583 TCCAAAATATTGATTTC
194 TCCAAAATATTGATTTC
*
855600 TCATAATTGGGGATACTCCAACCC
1 TCATAATCGGGGATACTCCAACCC
855624 TGTTATTTTC
Statistics
Matches: 219, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
209 1 0.00
210 46 0.21
211 172 0.79
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (210 bp):
TCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCTCATAATCGGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGT
TATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGACTTTATTTC
CAAAATATTGATTTC
Found at i:855621 original size:79 final size:78
Alignment explanation
Indices: 855532--855762 Score: 250
Period size: 79 Copynumber: 2.9 Consensus size: 78
855522 TTTCATCGGA
** * *
855532 GATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCTCGACTTTATTTCCAAAATATTGAT
1 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACC-CGATTTTATTTCCAAAATATTGAT
**
855597 TTCTCATAATTGGG
65 TTCTCATAACCGGG
* * * *
855611 GATACTCCAACCCTGTTATTTTCGATGGGATACTCCAATCCCGATTTTATTTCC-TAATCATCGA
1 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCGATTTTATTTCCAAAAT-ATTGA
* *
855675 TTTTTCACAACCGGG
64 TTTCTCATAACCGGG
* * * *
855690 GATACTCCAACCCCTTTATTTTCAAGGGGATACTCCAACCCCG-TTATTATCTCCAAAATATTAA
1 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCGATT-TTATTTCCAAAATATT-G
855754 ATTTCTCAT
63 ATTTCTCAT
855763 CGGAACATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
78 5 0.04
79 107 0.86
80 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (78 bp):
GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCGATTTTATTTCCAAAATATTGATT
TCTCATAACCGGG
Found at i:855645 original size:107 final size:106
Alignment explanation
Indices: 855238--855653 Score: 377
Period size: 107 Copynumber: 3.9 Consensus size: 106
855228 TCTCATGATC
* * *
855238 GGGGATACTCCAACTCCGATTTTATTTCTAAAAACACTAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGACTTTATTTC-CAAAACACTAATTTCTCACAATCGAGGATACTCCAA
*
855303 CCTTGTTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGA
65 CCCTGTTATTTCATC-GGGATACTCCAACCCCGTTACCTCCGA
* * * * * * *
855346 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACTCCGACTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAA-
* * * * ** * *
855411 CCCGGTTTTATTT--TC--AAAACACCAATTTTCCTTTA-AT-C--
65 CCC--TGTTATTTCATCGGGATACTCCAA--CCCCGTTACCTCCGA
* * *
855449 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGACTTTATTTCC-AAAACACTAATTTCTCACAATCGAGGATACTCCAA
855514 -CCTCGTTATTTCATCGGAGATACTCCAACCCCGTTACCTCCGA
65 CCCT-GTTATTTCATCGG-GATACTCCAACCCCGTTACCTCCGA
* * * * * *
855557 GGGGATACTCCAAC-CTCGACTTTATTTCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACTC-CGACTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAA
*
855621 CCCTGTTATTTTCGAT-GGGATACTCCAATCCCG
65 CCCTGTTA-TTTC-ATCGGGATACTCCAACCCCG
855654 ATTTTATTTC
Statistics
Matches: 241, Mismatches: 47, Indels: 41
0.73 0.14 0.12
Matches are distributed among these distances:
100 1 0.00
101 6 0.02
102 2 0.01
103 28 0.12
104 33 0.14
105 9 0.04
106 9 0.04
107 80 0.33
108 64 0.27
109 2 0.01
110 7 0.03
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (106 bp):
GGGGATACTCCAACTCCGACTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAAC
CCTGTTATTTCATCGGGATACTCCAACCCCGTTACCTCCGA
Found at i:857783 original size:4 final size:4
Alignment explanation
Indices: 857774--857802 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
857764 TATTTTAAGG
857774 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
857803 GTTTTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:868108 original size:1 final size:1
Alignment explanation
Indices: 868102--868162 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
868092 CTTCTTTTCT
* ** * * * * *
868102 AAAAAAAACAAAAGCAAAAAAAACAAAAAAATAACAAAAAAAAAAAAAAACAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
868163 GAAGAATCTG
Statistics
Matches: 45, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.87, C:0.08, G:0.03, T:0.02
Consensus pattern (1 bp):
A
Found at i:868140 original size:16 final size:16
Alignment explanation
Indices: 868102--868162 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 16
868092 CTTCTTTTCT
868102 AAAAAAAACAAAAGCAAA-
1 AAAAAAAA-AAAA--AAAC
*
868120 AAAAACAAAAAAATAAC
1 AAAAA-AAAAAAAAAAC
868137 AAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAC
868153 AAAGAAAAAA
1 AAA-AAAAAA
868163 GAAGAATCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 15 0.39
17 11 0.29
18 9 0.24
19 3 0.08
ACGTcount: A:0.87, C:0.08, G:0.03, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAC
Found at i:869305 original size:100 final size:100
Alignment explanation
Indices: 869132--869314 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 100
869122 CATTCCGCTT
* ** *
869132 TTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
1 TTTAGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
869197 GTCCTCAAAGAGCAGGACACTCTCTCCTTTCGCCC
66 GTCCTCAAAGAGCAGGACACTCTCTCCTTTCGCCC
* **
869232 TTTAGTCCTCAAAGAGCAGGGCACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
1 TTTAGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
869297 GTCCTCAAAGAGCAGGAC
66 GTCCTCAAAGAGCAGGAC
869315 GCCTTTCAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (100 bp):
TTTAGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
GTCCTCAAAGAGCAGGACACTCTCTCCTTTCGCCC
Found at i:869310 original size:61 final size:61
Alignment explanation
Indices: 869235--870068 Score: 894
Period size: 61 Copynumber: 14.3 Consensus size: 61
869225 TTCGCCCTTT
*
869235 AGTCCTCAAAGAGCAGGGCACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
869296 AGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * * *
869351 AGTCCTCAAAGAGCA--AGA---T-GCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
869406 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT-
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* * *
869467 AGTCCTCAAAGAGTAGG--A----CGCCTTTTAAAG-CCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
869521 AGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
** * * **
869580 AGTCCTCAAAGAGCAGGA-TGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTC
*
869641 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT-
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* * *
869702 AGTCCTCAAAGAGTAGGACGCCTT-T-C----AAAG-CCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
869756 AGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
** * *
869815 AGTCCTCAAAGAGCAGGA-TGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTT-C
* * * *
869876 AGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCATACAAGTTGGTGGCAC-CTTC
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* ** * *
869935 AGTCCTCAAAGAGCAGGACGCCAAC-ACTTCTTAAAGCCCACATAAGTTGGTGGCACCTTTT-
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTT-TTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* * *
869996 AGTCCTCAAAGAGCAGGACACCTT-T-C----AAAGCCCACACTAGTTGATGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
870051 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
870069 TGCACTTTAT
Statistics
Matches: 676, Mismatches: 53, Indels: 94
0.82 0.06 0.11
Matches are distributed among these distances:
50 1 0.00
51 1 0.00
53 9 0.01
54 81 0.12
55 139 0.21
57 2 0.00
58 6 0.01
59 98 0.14
60 138 0.20
61 181 0.27
62 20 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (61 bp):
AGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:869654 original size:120 final size:115
Alignment explanation
Indices: 869261--870076 Score: 1056
Period size: 120 Copynumber: 7.0 Consensus size: 115
869251 GGCACCTTCT
*
869261 CCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-TTTC--
1 CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
*
869322 --AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGATG
66 TTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATG
* * *
869371 CC-TTTCAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTCTCCT
1 CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTT-TTCT
* * * *
869435 TTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
65 TTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATG
869487 CCTTTT-AAAG-CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
1 CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
869550 TTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
* *
869600 CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACACCTT
1 C-----CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTT
* * * * *
869665 CTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
61 -TTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATG
869722 CC-TTTCAAAG-CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
1 CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
869785 TTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
*
869835 CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCT
1 C-----CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCT
* *
869899 TTTCTTTTAAAGCCCATACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG
60 TTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
* * *
869955 CCAACACTTCTT-AAAGCCCACATAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACC-
1 ----C-CTT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
* * * *
870018 TTTC----AAAGCCCACACTAGTTGATGGCACTTTTTAGTCCTCAAAGAGCAGGATG
60 TTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGATG
870071 CACTTT
1 C-CTTT
870077 ATTTTCCTCT
Statistics
Matches: 631, Mismatches: 43, Indels: 63
0.86 0.06 0.09
Matches are distributed among these distances:
109 3 0.00
110 50 0.08
111 2 0.00
112 7 0.01
113 42 0.07
114 60 0.10
115 113 0.18
116 80 0.13
117 4 0.01
118 6 0.01
119 19 0.03
120 188 0.30
121 35 0.06
122 21 0.03
124 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (115 bp):
CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTT
TTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
Found at i:869657 original size:235 final size:231
Alignment explanation
Indices: 869261--870071 Score: 1203
Period size: 235 Copynumber: 3.5 Consensus size: 231
869251 GGCACCTTCT
*
869261 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* *
869326 CCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGATGC-----C-TTTCAAAGCCTA
66 CCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCA
869385 CACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCACACA
130 CACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCACACA
869450 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
195 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
869487 CCTTTTAAAG-CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCC-TTTC---
869551 TAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAG
62 -AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAG
*
869616 CCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCA
126 CCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCA
869681 CACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
191 CACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
*
869722 CCTTTCAAAG-CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCC-TTTC---
869786 TAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAG
62 -AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAG
* * * *
869851 CCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCC
126 CCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCC
* * *
869914 ATACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACG
190 ACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
* * *
869955 CCAACACTTCTTAAAGCCCACATAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTT
1 ----C-CTT-TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTT
* * * *
870020 TCAAAGCCCACACTAGTTGATGGCACTTTTTAGTCCTCAAAGAGCAGGATGC
60 TCAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGATGC
870072 ACTTTATTTT
Statistics
Matches: 544, Mismatches: 21, Indels: 30
0.91 0.04 0.05
Matches are distributed among these distances:
225 45 0.08
226 14 0.03
229 23 0.04
230 25 0.05
233 21 0.04
234 32 0.06
235 305 0.56
236 23 0.04
237 1 0.00
238 3 0.01
239 9 0.02
240 43 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (231 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
CCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCAC
ACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCACACAA
GTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACG
Found at i:870883 original size:19 final size:19
Alignment explanation
Indices: 870859--870920 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
870849 TTTTGAATTT
870859 CAAACAGTTTGTATCGATA
1 CAAACAGTTTGTATCGATA
***
870878 CAAACAAAAAATGTATCGATA
1 CAAAC--AGTTTGTATCGATA
*
870899 CATA-AGTGTTGTATCGATA
1 CAAACAGT-TTGTATCGATA
870918 CAA
1 CAA
870921 TGTATCGATA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
21 14 0.44
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (19 bp):
CAAACAGTTTGTATCGATA
Found at i:870926 original size:13 final size:13
Alignment explanation
Indices: 870908--870932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
870898 ACATAAGTGT
870908 TGTATCGATACAA
1 TGTATCGATACAA
870921 TGTATCGATACA
1 TGTATCGATACA
870933 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:870928 original size:32 final size:32
Alignment explanation
Indices: 870887--870957 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
870877 ACAAACAAAA
870887 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
870919 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
870951 AATGTAT
1 AATGTAT
870958 TGCTACGAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:870945 original size:19 final size:18
Alignment explanation
Indices: 870889--870951 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
870879 AAACAAAAAA
870889 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
870908 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
870921 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
870940 TGTATCGATACA
1 TGTATCGATACA
870952 ATGTATTGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:871002 original size:21 final size:21
Alignment explanation
Indices: 870976--871016 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
870966 AGCTACTGCC
870976 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
870997 AAGGAAATGTATCGATACAT
1 AAGGAAATGTATCGATACAT
871017 CGATCTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.27
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:873581 original size:52 final size:52
Alignment explanation
Indices: 873281--873624 Score: 204
Period size: 52 Copynumber: 6.6 Consensus size: 52
873271 TTAAGTTTCT
* * * *
873281 CAATTGTT-CATAATCGGGGATACTCCAACCTCGGTTTTATTTCC-AAAATAT
1 CAATT-TTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * * *
873332 TAATTTTTCATGATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * * * * * * *
873384 TAATTTTTCACAATCGAGGATAC-CTCAACCTC-A--TTATTTCATCAGGGATACTC
1 CAATTTTCCATAATCGGGGATACTC-CAACCCCGATTTTATTTC--CA--AAAACAC
* * * ** ** * *
873437 CAACCCCGTTACC-TCAGAGGGGATACTCCAACCCCGGCTTTATTTCC-AAAATAT
1 CAA----TTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
** * *
873491 TGA-TTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
1 CAATTTTC-CATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* *
873542 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * *
873595 CAATTTTTCACAATCGAGGATACTCCAACC
1 CAATTTTCCATAATCGGGGATACTCCAACC
873625 TCGTTATTTC
Statistics
Matches: 221, Mismatches: 52, Indels: 39
0.71 0.17 0.12
Matches are distributed among these distances:
49 10 0.05
50 3 0.01
51 76 0.34
52 82 0.37
53 21 0.10
54 3 0.01
56 14 0.06
57 5 0.02
59 7 0.03
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
Found at i:873643 original size:28 final size:28
Alignment explanation
Indices: 873607--873683 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 28
873597 ATTTTTCACA
* * **
873607 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACCTC
*
873635 ATCGGGGATACTCTAACCCCGTTACCTC
1 ATCGGGGATACTCCAACCCCGTTACCTC
*
873663 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
873684 CCTTTATTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACCTC
Found at i:873655 original size:211 final size:210
Alignment explanation
Indices: 873288--873734 Score: 734
Period size: 211 Copynumber: 2.1 Consensus size: 210
873278 TCTCAATTGT
* * ** * *
873288 TCATAATCGGGGATACTCCAACCTCGGTTTTATTTCCAAAATATTAATTTTTCATGATCGGGGAT
1 TCATAATCGGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCATAATCGGGGAT
*
873353 ACTCCAACTCCGATTTTATTTCCAAAAACACTAATTTTTCACAATCGAGGATACCTCAACCTCAT
66 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACCTCAACCTCAT
*
873418 TATTTCATCAGGGATACTCCAACCCCGTTACCTCAGAGGGGATACTCCAACCCCGGCTTTATTTC
131 TATTTCATCAGGGATACTCCAACCCCGTTACCTCAGAGGGGATACTCCAACCCCGCCTTTATTTC
873483 CAAAATATTGATTTC
196 CAAAATATTGATTTC
* *
873498 TCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
1 TCATAATCGGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCC-ATAATCGGGGA
873563 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATA-CTCCAACCTC
65 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACCT-CAACCTC
* * * *
873627 GTTATTTCATCGGGGATACTCTAACCCCGTTACCTCTGAGGGGATACTCCAACCCCGCCTTTATT
129 ATTATTTCATCAGGGATACTCCAACCCCGTTACCTCAGAGGGGATACTCCAACCCCGCCTTTATT
873692 TCCAAAATATTGATTTC
194 TCCAAAATATTGATTTC
*
873709 TCATAATTGGGGATACTCCAACCCCG
1 TCATAATCGGGGATACTCCAACCCCG
873735 TTATTTTCGA
Statistics
Matches: 220, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
210 49 0.22
211 171 0.78
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (210 bp):
TCATAATCGGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCATAATCGGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACCTCAACCTCAT
TATTTCATCAGGGATACTCCAACCCCGTTACCTCAGAGGGGATACTCCAACCCCGCCTTTATTTC
CAAAATATTGATTTC
Found at i:873747 original size:79 final size:79
Alignment explanation
Indices: 873637--873836 Score: 244
Period size: 79 Copynumber: 2.5 Consensus size: 79
873627 GTTATTTCAT
* ** *
873637 CGGGGATACTCTAACCCCGTTA-CCTCTGAGGGGATACTCCAACCCCGCCTTTATTTCCAAAAT-
1 CGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGACTTTATTTCC-AAATC
* *
873700 ATTGATTTCTCATAAT
64 ATTGATTTCTCACAAC
* * * *
873716 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTATTTCCTAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCAAATCAT
*
873781 TGATTTTTCACAAC
66 TGATTTCTCACAAC
* *
873795 CGAGGATACTCC-ACCCCGTTATTTTCAAGGGGATACTCCAAC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAC
873837 ATCGTTATTA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 31 0.30
79 71 0.68
80 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCAAATCAT
TGATTTCTCACAAC
Found at i:879108 original size:17 final size:19
Alignment explanation
Indices: 879067--879108 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
879057 TTAATATATT
879067 TATATTATATTATTTATAA
1 TATATTATATTATTTATAA
* *
879086 TGTATTATA-T-TTTGTAA
1 TATATTATATTATTTATAA
879103 TATATT
1 TATATT
879109 TTAATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 11 0.55
18 1 0.05
19 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TATATTATATTATTTATAA
Found at i:879411 original size:2 final size:2
Alignment explanation
Indices: 879404--879433 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
879394 AAATACACAA
879404 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
879434 GAAGACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:880180 original size:12 final size:12
Alignment explanation
Indices: 880145--880188 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
880135 TTAATCAAAT
880145 AATAAAATTTAA
1 AATAAAATTTAA
* *
880157 ATTTAAATTTAA
1 AATAAAATTTAA
*
880169 AATAAAAATT-A
1 AATAAAATTTAA
880180 AATAAAATT
1 AATAAAATT
880189 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATAAAATTTAA
Found at i:880484 original size:2 final size:2
Alignment explanation
Indices: 880477--880506 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
880467 GATCATTTTC
*
880477 CT CT CT CT CT CT CT CT GT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
880507 ATATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:884160 original size:11 final size:12
Alignment explanation
Indices: 884139--884164 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
884129 ATCTCAACCC
884139 TTTTTCTTTTTT
1 TTTTTCTTTTTT
884151 TTTTTCTTTTTT
1 TTTTTCTTTTTT
884163 TT
1 TT
884165 CTTCACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:884572 original size:25 final size:25
Alignment explanation
Indices: 884544--884593 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
884534 TATATTTCGT
*
884544 AAATTATTAGTTTTATATAA-TATTA
1 AAATTATTA-ATTTATATAATTATTA
884569 AAATTATTAATTTATATAATTATTA
1 AAATTATTAATTTATATAATTATTA
884594 TATATGCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
AAATTATTAATTTATATAATTATTA
Found at i:885952 original size:20 final size:20
Alignment explanation
Indices: 885901--885953 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
885891 TTTAAAATTG
885901 TATTAAATAAAAAAATAATTAA
1 TATT-AATAAAAAAAT-ATTAA
* *
885923 TAATATTAAAAAAAT-TTAAA
1 TATTAATAAAAAAATATT-AA
885943 TATTAATAAAA
1 TATTAATAAAA
885954 TGTTGATGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.08
20 11 0.42
21 10 0.38
22 3 0.12
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TATTAATAAAAAAATATTAA
Found at i:886049 original size:25 final size:24
Alignment explanation
Indices: 886012--886058 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
886002 ATTTATTTTT
886012 ATATAAAATTTAAAATTTTATATC
1 ATATAAAATTTAAAATTTTATATC
* *
886036 ATATAATATGTTAATATTTTATA
1 ATATAAAAT-TTAAAATTTTATA
886059 AATATTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
ATATAAAATTTAAAATTTTATATC
Found at i:888561 original size:20 final size:20
Alignment explanation
Indices: 888536--888575 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
888526 CCCCTCGTTT
888536 AAAAGGATTAATTCATGTCC
1 AAAAGGATTAATTCATGTCC
888556 AAAAGGATTAATTCATGTCC
1 AAAAGGATTAATTCATGTCC
888576 CTGCTGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
AAAAGGATTAATTCATGTCC
Found at i:888840 original size:12 final size:12
Alignment explanation
Indices: 888814--888847 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
888804 GCCTCTATTT
888814 GAAAAA-AAAAA
1 GAAAAAGAAAAA
888825 -AAAAAGAAAAA
1 GAAAAAGAAAAA
888836 GAAAAAGAAAAA
1 GAAAAAGAAAAA
888848 ATCATGACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 5 0.24
12 11 0.52
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
GAAAAAGAAAAA
Found at i:891683 original size:13 final size:15
Alignment explanation
Indices: 891665--891696 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
891655 TTTTTTAATT
891665 TTATTCA-AT-TAAC
1 TTATTCATATCTAAC
891678 TTATTCATATCTAAC
1 TTATTCATATCTAAC
891693 TTAT
1 TTAT
891697 GATATTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATTCATATCTAAC
Found at i:893746 original size:12 final size:12
Alignment explanation
Indices: 893731--893778 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
893721 AATTATTTAA
*
893731 ATTATTATTGTT
1 ATTATTAATGTT
*
893743 ATTA-TAATATT
1 ATTATTAATGTT
*
893754 TTTATTAATGTT
1 ATTATTAATGTT
*
893766 ATAATTAATGTT
1 ATTATTAATGTT
893778 A
1 A
893779 ATAATATTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
11 8 0.28
12 21 0.72
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
ATTATTAATGTT
Found at i:894223 original size:27 final size:27
Alignment explanation
Indices: 894188--894299 Score: 95
Period size: 26 Copynumber: 4.0 Consensus size: 27
894178 TAAAATATTG
*
894188 TAAACAAAATTATAAAAAATTA-AAAA
1 TAAATAAAATTATAAAAAATTATAAAA
* *
894214 TAAAGTAAAATTCAT-AAAATTTAAAAAA
1 TAAA-TAAAATT-ATAAAAAATTATAAAA
* *
894242 T-CATAAGATTATAAAAAATTATAAAA
1 TAAATAAAATTATAAAAAATTATAAAA
*
894268 AAAATTCAAGAATTATAAAAAATGTATAAAA
1 TAAA-T-AA-AATTATAAAAAAT-TATAAAA
894299 T
1 T
894300 TTAAAAATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
25 2 0.03
26 21 0.31
27 15 0.22
28 8 0.12
29 2 0.03
30 12 0.18
31 7 0.10
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (27 bp):
TAAATAAAATTATAAAAAATTATAAAA
Found at i:894241 original size:18 final size:18
Alignment explanation
Indices: 894220--894306 Score: 66
Period size: 18 Copynumber: 5.2 Consensus size: 18
894210 AAAATAAAGT
894220 AAAATTCATAAAATTTAA
1 AAAATTCATAAAATTTAA
*
894238 AAAA-TCATAAGATTATAA
1 AAAATTCATAAAATT-TAA
894256 AAAATT-AT--AA---AA
1 AAAATTCATAAAATTTAA
*
894268 AAAATTCA-AGAATTATAA
1 AAAATTCATAAAATT-TAA
894286 AAAATGT-ATAAAATTTAA
1 AAAAT-TCATAAAATTTAA
894304 AAA
1 AAA
894307 TAATTATTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 22
0.69 0.04 0.28
Matches are distributed among these distances:
12 8 0.15
13 1 0.02
14 2 0.04
16 1 0.02
17 9 0.16
18 27 0.49
19 7 0.13
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAATTCATAAAATTTAA
Found at i:894331 original size:8 final size:8
Alignment explanation
Indices: 894312--894375 Score: 57
Period size: 8 Copynumber: 8.2 Consensus size: 8
894302 AAAAATAATT
894312 ATTTTAATA
1 ATTTT-ATA
894321 ATTTTATA
1 ATTTTATA
894329 ATTTTAT-
1 ATTTTATA
894336 -TTTTAT-
1 ATTTTATA
894342 -TTTTATA
1 ATTTTATA
*
894349 ATTTTTTGA
1 ATTTTAT-A
894358 ATTTTATA
1 ATTTTATA
894366 TATTTT-TA
1 -ATTTTATA
894374 AT
1 AT
894376 ACTTTTAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
6 12 0.24
7 2 0.04
8 18 0.37
9 17 0.35
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (8 bp):
ATTTTATA
Found at i:894343 original size:28 final size:29
Alignment explanation
Indices: 894310--894382 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
894300 TTAAAAATAA
*
894310 TTATTTTAATAATTTTAT-AATTTTATTT
1 TTATTTTAATAATTTTATGAATTTTATAT
* *
894338 TTATTTTTATAATTTTTTGAATTTTATAT
1 TTATTTTAATAATTTTATGAATTTTATAT
* *
894367 AT-TTTTAATACTTTTA
1 TTATTTTAATAATTTTA
894383 AAAATTTTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
28 27 0.73
29 10 0.27
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (29 bp):
TTATTTTAATAATTTTATGAATTTTATAT
Found at i:895041 original size:28 final size:28
Alignment explanation
Indices: 894965--895043 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
894955 ATAAATATGG
* *
894965 TATAAATATATAGATATATT-AAAATTTA
1 TATAAATTTATA-ATATTTTAAAAATTTA
* *
894993 TGTAATATTTATTAAGA-TTTAAAAATTTA
1 TATAA-ATTTA-TAATATTTTAAAAATTTA
895022 TATAAATTTATAATATTTTAAA
1 TATAAATTTATAATATTTTAAA
895044 TAAATAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
27 4 0.10
28 17 0.41
29 18 0.44
30 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (28 bp):
TATAAATTTATAATATTTTAAAAATTTA
Found at i:895570 original size:18 final size:18
Alignment explanation
Indices: 895544--895578 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
895534 ATATAACATA
*
895544 AATAAAAAATTAAAATAC
1 AATAAAAAAATAAAATAC
*
895562 AATATAAAAATAAAATA
1 AATAAAAAAATAAAATA
895579 AAATGACACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
AATAAAAAAATAAAATAC
Found at i:895676 original size:11 final size:11
Alignment explanation
Indices: 895662--895809 Score: 62
Period size: 11 Copynumber: 13.4 Consensus size: 11
895652 TATAATATCT
895662 TAAAAATAATA
1 TAAAAATAATA
* * *
895673 TAAATACAACA
1 TAAAAATAATA
895684 TAAAAATAAT-
1 TAAAAATAATA
895694 TAAAATATAATA
1 TAAAA-ATAATA
*
895706 CAAAAAATAAATA
1 -TAAAAAT-AATA
* *
895719 TGATACA-AATA
1 T-AAAAATAATA
895730 TAAAAAT-A-A
1 TAAAAATAATA
895739 T--AAAT-ATA
1 TAAAAATAATA
895747 TAAAAATATTATA
1 TAAAAATA--ATA
*
895760 TAAATTTATAATA
1 TAAA--AATAATA
**
895773 TTTTAAAT-A-A
1 -TAAAAATAATA
895783 TAAAAATAATA
1 TAAAAATAATA
895794 TAAAAATAAATA
1 TAAAAAT-AATA
895806 TAAA
1 TAAA
895810 TACGTAAATT
Statistics
Matches: 101, Mismatches: 18, Indels: 35
0.66 0.12 0.23
Matches are distributed among these distances:
7 5 0.05
8 2 0.02
9 7 0.07
10 15 0.15
11 34 0.34
12 12 0.12
13 21 0.21
14 2 0.02
15 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:895687 original size:22 final size:22
Alignment explanation
Indices: 895662--895740 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 22
895652 TATAATATCT
895662 TAAAAATAATATAAATACAACA
1 TAAAAATAATATAAATACAACA
*
895684 TAAAAATAAT-TAAAATATAATACA
1 TAAAAATAATAT-AAATA-CA-ACA
* *
895708 -AAAAATAA-ATATGATACAAATA
1 TAAAAATAATATA-AATAC-AACA
895730 TAAAAATAATA
1 TAAAAATAATA
895741 AATATATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
21 1 0.02
22 18 0.40
23 22 0.49
24 4 0.09
ACGTcount: A:0.68, C:0.05, G:0.01, T:0.25
Consensus pattern (22 bp):
TAAAAATAATATAAATACAACA
Found at i:895736 original size:46 final size:47
Alignment explanation
Indices: 895631--895749 Score: 120
Period size: 46 Copynumber: 2.5 Consensus size: 47
895621 AATAATTAAC
* *
895631 ATATAAAAATTTATATAAAATTATAATATCTTAAAAATAATATAAATACA
1 ATATAAAAA-TAAT-TAAAA-TATAATATCTAAAAAATAATATAAATACA
* *
895681 ACATAAAAATAATTAAAATATAATA-C-AAAAAATAA-ATATGATACAA
1 ATATAAAAATAATTAAAATATAATATCTAAAAAATAATATA-AATAC-A
895727 ATATAAAAATAA-TAAATATATAA
1 ATATAAAAATAATTAAA-ATATAA
895750 AAATATTATA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
44 3 0.05
45 16 0.26
46 19 0.31
47 7 0.11
48 5 0.08
49 3 0.05
50 8 0.13
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (47 bp):
ATATAAAAATAATTAAAATATAATATCTAAAAAATAATATAAATACA
Found at i:895754 original size:36 final size:36
Alignment explanation
Indices: 895714--895790 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
895704 TACAAAAAAT
895714 AAATATGATACAAATATA-AAAATAATAAATATATAA
1 AAATATGATACAAATATATAAAATAATAAATA-ATAA
* * * * **
895750 AAATATTATATAAATTTATAATATTTTAAATAATAA
1 AAATATGATACAAATATATAAAATAATAAATAATAA
895786 AAATA
1 AAATA
895791 ATATAAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
36 24 0.71
37 10 0.29
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (36 bp):
AAATATGATACAAATATATAAAATAATAAATAATAA
Found at i:895762 original size:21 final size:21
Alignment explanation
Indices: 895738--895811 Score: 61
Period size: 21 Copynumber: 3.8 Consensus size: 21
895728 TATAAAAATA
895738 ATAAATATATAAAAATATTAT
1 ATAAATATATAAAAATATTAT
*
895759 ATAAAT-T-T-ATAATATT-T
1 ATAAATATATAAAAATATTAT
*
895776 -TAAATA-ATAAAAATAATAT
1 ATAAATATATAAAAATATTAT
* * *
895795 AAAAATAAATATAAATA
1 ATAAATATATAAAAATA
895812 CGTAAATTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
16 5 0.12
17 2 0.05
18 13 0.31
19 2 0.05
20 6 0.14
21 14 0.33
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
ATAAATATATAAAAATATTAT
Found at i:895803 original size:17 final size:17
Alignment explanation
Indices: 895694--895808 Score: 61
Period size: 17 Copynumber: 6.5 Consensus size: 17
895684 TAAAAATAAT
*
895694 TAAAATATAATACAAAAAA
1 TAAAA-ATAATA-TAAAAA
* * * *
895713 TAAATATGATACAAATA
1 TAAAAATAATATAAAAA
*
895730 TAAAAATAATA-AATATA
1 TAAAAATAATATAA-AAA
* *
895747 TAAAAATATTATATAAAT
1 TAAAAATAATATA-AAAA
* * * *
895765 TTATAATATTTTAAATAA
1 TAAAAATAATATAAA-AA
895783 TAAAAATAATATAAAAA
1 TAAAAATAATATAAAAA
*
895800 TAAATATAA
1 TAAAAATAA
895809 ATACGTAAAT
Statistics
Matches: 74, Mismatches: 18, Indels: 10
0.73 0.18 0.10
Matches are distributed among these distances:
16 2 0.03
17 38 0.51
18 29 0.39
19 5 0.07
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (17 bp):
TAAAAATAATATAAAAA
Found at i:895805 original size:12 final size:12
Alignment explanation
Indices: 895776--895809 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
895766 TATAATATTT
895776 TAAATAATAAAAA
1 TAAAT-ATAAAAA
895789 T-AATATAAAAA
1 TAAATATAAAAA
895800 TAAATATAAA
1 TAAATATAAA
895810 TACGTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 8 0.40
12 11 0.55
13 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
TAAATATAAAAA
Found at i:895908 original size:18 final size:21
Alignment explanation
Indices: 895863--895908 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 21
895853 TAAAAATAAC
895863 ACATATATTAATATCAAATTT
1 ACATATATTAATATCAAATTT
**
895884 ATTTATA-TAAT-T-AAATTT
1 ACATATATTAATATCAAATTT
895902 ACATATA
1 ACATATA
895909 CATATAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
18 11 0.52
19 1 0.05
20 4 0.19
21 5 0.24
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.46
Consensus pattern (21 bp):
ACATATATTAATATCAAATTT
Found at i:899673 original size:31 final size:31
Alignment explanation
Indices: 899610--899685 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
899600 AAGTGTGATC
* * *
899610 TTTAAATTTTAAATTATATTTTATATTAATT
1 TTTAAATTTTAAAATATATTATACATTAATT
*
899641 TTTAAATTTTAAAATATATTATCCA-TACATT
1 TTTAAATTTTAAAATATATTATACATTA-ATT
* *
899672 TTAAAATTTAAAAA
1 TTTAAATTTTAAAA
899686 CTCATATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (31 bp):
TTTAAATTTTAAAATATATTATACATTAATT
Found at i:903640 original size:20 final size:20
Alignment explanation
Indices: 903611--903682 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
903601 AAAAAGACAT
*
903611 AATGTATCGATATATTGCAG
1 AATGTATCGATATATTGCAA
* *
903631 AATATATCGATACATT-CATA
1 AATGTATCGATATATTGCA-A
* *
903651 CATGTATCGATATATTGAAA
1 AATGTATCGATATATTGCAA
903671 AATGTATCGATA
1 AATGTATCGATA
903683 CATTTGGGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 2 0.05
20 39 0.93
21 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (20 bp):
AATGTATCGATATATTGCAA
Found at i:903667 original size:40 final size:39
Alignment explanation
Indices: 903608--903686 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 39
903598 GGTAAAAAGA
* *
903608 CATAATGTATCGATATATTGCAGAATATATCGATACATT
1 CATAATGTATCGATATATTGAAAAATATATCGATACATT
*
903647 CATACATGTATCGATATATTGAAAAATGTATCGATACATT
1 CATA-ATGTATCGATATATTGAAAAATATATCGATACATT
903687 TGGGTAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 32 0.89
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATATATTGAAAAATATATCGATACATT
Found at i:904258 original size:31 final size:31
Alignment explanation
Indices: 904205--904263 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
904195 GATTTGAAAA
*
904205 GGGTTGCCACCAACTTGCGTGGGTTTTAGAT
1 GGGTTGCCACCAACTTGCGTGGGCTTTAGAT
** *
904236 GGGTTGCCACCGGCTTGTGTGGGCTTTA
1 GGGTTGCCACCAACTTGCGTGGGCTTTA
904264 AAAGGGTACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.12, C:0.20, G:0.36, T:0.32
Consensus pattern (31 bp):
GGGTTGCCACCAACTTGCGTGGGCTTTAGAT
Found at i:904286 original size:28 final size:28
Alignment explanation
Indices: 904253--904439 Score: 230
Period size: 28 Copynumber: 6.6 Consensus size: 28
904243 CACCGGCTTG
*
904253 TGTGGGCTTTAAAAGGGTACCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACTGACT
* * *
904281 TGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGGTGCCACTGACT
* * * *
904309 TGTGAGCTTTGAAAAGAGTGCCATTGATT
1 TGTGGGCTTT-AAAAGGGTGCCACTGACT
*
904338 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGGTGCCACTGACT
* *
904367 TGTGGGCTTTAAAAGGGTGCCATTAACT
1 TGTGGGCTTTAAAAGGGTGCCACTGACT
* *
904395 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACTGACT
*
904423 TGTGGGCTTTGAAAGGG
1 TGTGGGCTTTAAAAGGG
904440 CTTTGAAAAG
Statistics
Matches: 138, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
28 88 0.64
29 50 0.36
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGGTGCCACTGACT
Found at i:904462 original size:40 final size:39
Alignment explanation
Indices: 904398--904476 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 39
904388 ATTAACTTGT
* *
904398 GGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA
1 GGGCTTTGAAAAGATGCCACTGACTTATGGGCTTTGAAA
904437 GGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAA
1 GGGCTTTGAAAAGA-TGCCACTGACTTATGGGCTTTGAAA
904477 AGGTGCCACT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
39 13 0.35
40 24 0.65
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (39 bp):
GGGCTTTGAAAAGATGCCACTGACTTATGGGCTTTGAAA
Found at i:904486 original size:68 final size:67
Alignment explanation
Indices: 904370--904507 Score: 215
Period size: 68 Copynumber: 2.0 Consensus size: 67
904360 ACTGACTTGT
* * *
904370 GGGCTTTAAAAGGGTGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA
1 GGGCTTTAAAAGAGTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA
904435 AA
66 AA
*
904437 GGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTT
1 GGGCTTT-AAAAGAGTGCCACTAACTTATGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTT
904501 GAAA
64 GAAA
904505 GGG
1 GGG
904508 TGCCACTGAC
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
67 7 0.11
68 53 0.82
69 5 0.08
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (67 bp):
GGGCTTTAAAAGAGTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA
AA
Done.