Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold345
Parameters: 2 7 7 80 10 50 1000
Length:  201931

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
167944--167988
10
4.5
10
86
8
65
68
2
0
28
1.01
167952--167989
19
2.0
19
94
0
67
68
2
0
28
1.03
168383--168428
21
2.2
21
84
7
58
30
0
4
65
1.12
168434--168473
17
2.4
17
87
8
55
67
0
0
32
0.91
168447--168495
17
2.7
18
84
9
55
61
0
0
38
0.96
168555--168590
19
1.9
19
88
5
56
47
0
0
52
1.00
168603--168643
21
1.9
22
85
5
57
46
0
0
53
1.00
168653--168698
14
3.2
14
81
3
56
54
0
0
45
0.99
168651--168723
28
2.7
26
76
15
85
49
1
0
49
1.09
168660--168706
14
3.4
14
82
11
60
59
0
0
40
0.97
168749--168785
15
2.4
15
90
4
56
48
8
0
43
1.32
169984--170073
16
5.6
16
75
9
76
48
1
2
47
1.21
170009--170072
16
3.9
16
87
2
92
50
0
3
46
1.17
169984--170068
32
2.7
30
80
7
98
50
1
2
45
1.22
170270--170328
26
2.4
23
79
17
73
32
0
1
66
1.02
171297--171352
18
2.9
20
84
12
57
55
0
0
44
0.99
171297--171352
19
2.9
20
84
7
71
55
0
0
44
0.99
173898--174023
60
2.1
60
82
5
148
61
0
0
38
1.02
173879--173999
16
7.4
16
68
24
74
60
0
0
38
1.03
173899--174020
24
4.8
28
70
19
86
60
0
0
38
1.02
175598--175633
15
2.5
15
90
4
56
50
2
0
47
1.15
175730--175802
27
2.8
27
79
6
71
61
0
2
35
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175747--175789
14
3.1
14
75
18
54
65
0
0
34
0.93
175749--175802
27
2.0
27
85
3
74
62
0
1
35
1.06
176207--176254
16
2.9
17
82
14
64
41
0
0
58
0.98
176581--176611
2
15.5
2
93
0
53
51
0
0
48
1.00
177497--177529
2
16.5
2
100
0
66
0
48
0
51
1.00
179234--179316
20
4.3
19
69
14
62
53
0
0
46
1.00
180066--180250
64
2.9
62
77
9
185
33
22
13
30
1.93
180605--180652
23
2.1
23
88
11
73
50
2
4
43
1.33
182316--182386
23
3.2
22
76
9
58
54
1
0
43
1.08
183293--183513
34
6.5
33
80
5
244
41
24
7
27
1.81
183295--183509
68
3.2
68
84
2
272
40
24
7
27
1.81
183293--183513
102
2.2
101
84
1
298
41
24
7
27
1.81
187766--187983
34
6.4
34
76
9
178
42
23
6
27
1.79
187767--187983
68
3.2
67
80
3
231
41
23
6
27
1.80
187768--187967
102
2.0
102
81
2
240
42
23
7
27
1.79
188775--188833
27
2.1
28
84
9
75
49
20
3
27
1.65
189402--189506
51
2.0
53
82
10
128
40
1
0
56
1.17
189745--189774
15
1.9
16
93
6
53
50
3
0
46
1.18
189828--189878
16
3.0
19
68
31
60
47
0
0
52
1.00
189829--189898
32
2.2
31
85
10
88
50
1
0
48
1.09
190030--190130
49
2.0
50
92
3
168
15
12
10
60
1.59
190925--190955
15
2.0
16
93
6
55
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
190926--190976
15
3.2
16
74
20
54
56
0
0
43
0.99
191862--191896
18
1.9
18
88
0
52
31
2
8
57
1.44
192091--192125
17
2.1
17
89
10
54
37
0
0
62
0.95
193862--193898
19
1.9
19
89
10
58
48
0
0
51
1.00
194340--194387
19
2.8
16
79
14
51
56
0
0
43
0.99
194346--194414
9
8.1
9
76
18
60
57
1
0
40
1.07
194900--194925
2
13.0
2
100
0
52
50
0
0
50
1.00
196990--197090
37
2.9
34
80
8
121
29
1
26
41
1.67
197058--197112
22
2.5
22
90
0
83
32
5
25
36
1.79
201680--201725
22
2.1
22
84
4
58
23
2
34
39
1.67
201686--201783
37
2.8
34
79
8
106
29
1
28
40
1.63
201751--201793
22
2.0
22
90
0
68
34
2
20
41
1.65
201760--201805
22
2.1
22
83
0
56
34
2
21
41
1.66

Tables:   1   2

The End!