Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold346
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 475321
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 1 of 3
Found at i:4828 original size:42 final size:42
Alignment explanation
Indices: 4773--4891 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
4763 TTCTTCTCTC
* *
4773 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
4815 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
4857 CTCCTCCTATCACCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
4892 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.47, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:4833 original size:24 final size:24
Alignment explanation
Indices: 4797--4882 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
4787 CCTCCTCTCT
* *
4797 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
4821 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
4842 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
4863 CTATCACCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
4883 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 4 0.08
24 21 0.44
ACGTcount: A:0.10, C:0.47, G:0.02, T:0.41
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:4857 original size:18 final size:18
Alignment explanation
Indices: 4788--4858 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
4778 CCTGTCATCC
* *
4788 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
4806 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
4828 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
4848 CTCCTGTCTCT
1 CTCCTGTCTCT
4859 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:8999 original size:42 final size:42
Alignment explanation
Indices: 8944--9062 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
8934 TTCTTCTCTC
* *
8944 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
8986 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
9028 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
9063 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:9004 original size:24 final size:24
Alignment explanation
Indices: 8968--9053 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
8958 CCTCCTCTCT
* *
8968 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
8992 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
9013 CTATC-T--CTCTTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
9034 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
9054 TCTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 3 0.06
20 5 0.11
21 14 0.30
22 5 0.11
24 20 0.43
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:11914 original size:475 final size:473
Alignment explanation
Indices: 10674--12397 Score: 2136
Period size: 476 Copynumber: 3.6 Consensus size: 473
10664 GTTTTCATCA
* * * * * * * *
10674 ATTAGGCACCATAAACATAGTCTACTCATTAGGATACATGATTTTGACGCTTTAGTTTCGCAAGA
1 ATTAGGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
* * * *
10739 AAGGCTTTCTT-CCCATCAGA-TTTTGTAAAGTCTAAATTCATGTCTCAAATGAGACAAACATAG
66 AAGGCTTTCTTCCCCCT-A-ATTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGACAAACATGG
* * * * *
10802 ATTCTAGGAAAGATCTTCATTAATTTTATGATTAGTCACTGTTAACACATTCTCCTCACTCGGAT
129 ATTCTAGGAATGATCTTCATTCATTTTATGATTAGTCACTATAAACACATTCTCCTCACTAGGAT
* * * * * *
10867 AAAAGATATTGATGAATTTCTTTCGCATGAAAATCTTTTATTTGCCCTATTTTTCATAAAATCAA
194 AAATGATATTGATGATTTTCTTT-GCATGGAAATCTTTTCTTGGCCCTATTTTCCATAAAATCAA
* * *
10932 AGTTCATCCCTTCAATTAGGCAAGCTTTGATTCTCGTAATAGACTCCATTCTTTTCAATATTGGG
258 AGTTCATCCCTTAAATTAGGCAAGCATTGATTCTCATAATAGACTCCATTCTTTTCAATA-TGGG
* * *
10997 -AGCCAAAAATACTTTTCCTTCAATA-GCATAAATGACATTGATGCTTTGGTATTGCAAGAAAAG
322 AAGCCAAAAATAC-ATTCCTTCATTATG-ATAAATGACATTGATGCTTTGGTGTTGCAAGAAAAG
* *
11060 GTTTTCTTTCCACAATGTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCC
385 GTTTTCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCC
*
11125 GC-TACTAATCCCCATTTATTTCAAA
450 -CATACTAATCCCCA-TTATTTCAAG
* * * *
11150 ATTAGGAACCATAAGCATAGTCTTCTCGTAAGGGTACACGATATTAATGCTTTGGTTTCGCAATA
1 ATTAGGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
* * * *
11215 AAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAAAGAGATC-AACATTGA
66 AAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGA-CAAACATGGA
* ** * **
11279 TTCTAGTAATGATCTTCATTCATTTTGCGATTAGGCACTATAAACACATTCTCCTCTTTAGGATA
130 TTCTAGGAATGATCTTCATTCATTTTATGATTAGTCACTATAAACACATTCTCCTCACTAGGATA
* * * * * * *
11344 AATGATATTGATGATTTTCTTTTGCTTAGAAATCTTTTCTTTGCCCCATTTTCCTTACAATGAAA
195 AATGATATTGATGATTTTC-TTTGCATGGAAATCTTTTCTTGGCCCTATTTTCCATAAAATCAAA
* *
11409 GTTTATCCCTTAAATTAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCAATATGGGAA
259 GTTCATCCCTTAAATTAGGCAAGCATTGATTCTCATAATAGACTCCATTCTTTTCAATATGGGAA
* * * * ** *
11474 ACCAAAAACACATTCCGTTCCTTATGACACTTGACATTGATGTTTTGGTGTTGCAAGAAAAGGTT
324 GCCAAAAATACATTCC-TTCATTATGATAAATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTT
* * * *
11539 TTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAACACAAGCATGAATGCCCAT
388 TTCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCAT
11604 ACTAATCCCCATTCATTTCAAG
453 ACTAATCCCCATT-ATTTCAAG
* * *
11626 ATTAGGCACCATAAGCATAGTCTTCTCGTACGGATACACGATATTGGTGC-TTGGTTTCGCAGGA
1 ATTAGGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
* * *
11690 AAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAATTCTTGTCTCAAATGAGACAAACGTGGAT
66 AAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGACAAACATGGAT
* * *
11755 TCTAGGAATGATCTTCATTCATTTTATGATTGGTCACCATAAACACATTCTCCTCATTAGGATAA
131 TCTAGGAATGATCTTCATTCATTTTATGATTAGTCACTATAAACACATTCTCCTCACTAGGATAA
* * * *
11820 ATGATATTGATGATTTTCTTCTGCGTGGAAATCTTTTCTTGGCCTTATTTTCCTTAAAATCAATG
196 ATGATATTGATGATTTTCTT-TGCATGGAAATCTTTTCTTGGCCCTATTTTCCATAAAATCAAAG
* * * * * * *
11885 TTCATCTCTTAAATAAGGCAAGCATTGATTCTCATAACAAACTCCATT-ATTTCAACATTGGAAG
260 TTCATCCCTTAAATTAGGCAAGCATTGATTCTCATAATAGACTCCATTCTTTTCAATATGGGAAG
** * * *
11949 GAAAAAATACATTCCCTTCATTATGATAAATGACATTGTTGCCTTGGTGTTGCAGGAAAAGGTTT
325 CCAAAAATACATT-CCTTCATTATGATAAATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTT
* * *
12014 TCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAGATAAGACAAACTTGAATGGCCATA
389 TCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCATA
*
12079 CTAATCCCCCTTATTTTCAAG
454 CTAATCCCCATTA-TTTCAAG
* * * * * *
12100 AATAGGCACCGTAAGCATAGTCTTCTCTTAAGAATATACCATATTGACT-CTTTGGTTTCGCAAG
1 ATTAGGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGA-TGCTTTGGTTTCGCAAG
* * **
12164 AAAGGCTTTCTTCCCACC-AATTTTTGTAAATTCTAAGTTCGCACCTCAAATGAGACAAACATGG
65 AAAGGCTTTCTTCCC-CCTAATTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGACAAACATGG
**
12228 ATTCTAGGAATGATCTTCATTCATTTTATGATTAGTCACTATAAACACATTCTGTTCACTAGGAT
129 ATTCTAGGAATGATCTTCATTCATTTTATGATTAGTCACTATAAACACATTCTCCTCACTAGGAT
** * * *
12293 AAATGATATTGACAATTTTCCTTTGCATGGAAATCTTTTATTTGCCCTGCCTTATTTTTCATAAA
194 AAATGATATTGATGATTTT-CTTTGCATGGAAATCTTTT-CTTG----GCCCTATTTTCCATAAA
* * *
12358 ATCAAAGTTCAACCCTTAAATTAGGCATGCTTTGATTCTC
253 ATCAAAGTTCATCCCTTAAATTAGGCAAGCATTGATTCTC
12398 GTAACTGTAG
Statistics
Matches: 1072, Mismatches: 154, Indels: 40
0.85 0.12 0.03
Matches are distributed among these distances:
473 1 0.00
474 182 0.17
475 395 0.37
476 436 0.41
477 9 0.01
480 49 0.05
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
ATTAGGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
AAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGACAAACATGGAT
TCTAGGAATGATCTTCATTCATTTTATGATTAGTCACTATAAACACATTCTCCTCACTAGGATAA
ATGATATTGATGATTTTCTTTGCATGGAAATCTTTTCTTGGCCCTATTTTCCATAAAATCAAAGT
TCATCCCTTAAATTAGGCAAGCATTGATTCTCATAATAGACTCCATTCTTTTCAATATGGGAAGC
CAAAAATACATTCCTTCATTATGATAAATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTC
TTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCATACT
AATCCCCATTATTTCAAG
Found at i:12751 original size:19 final size:19
Alignment explanation
Indices: 12701--12752 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
12691 ATTTCAATAA
* *
12701 TTTGTATCTATAAATAAGT
1 TTTGTATCGATACATAAGT
*
12720 GTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
12739 TTTGTATCGATACA
1 TTTGTATCGATACA
12753 ATGTATCGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:12807 original size:20 final size:20
Alignment explanation
Indices: 12782--12850 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
12772 CTGCCAAGGA
12782 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
12802 AATGTATCGATACA----T-
1 AATGTATCGATACATTTTTC
12817 --TGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
12835 AATGTATCGATACATT
1 AATGTATCGATACATT
12851 GTATCGATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 12 0.29
16 1 0.02
17 1 0.02
20 28 0.67
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTTTTC
Found at i:12822 original size:13 final size:13
Alignment explanation
Indices: 12804--12862 Score: 67
Period size: 13 Copynumber: 5.0 Consensus size: 13
12794 CATTTTTCAA
12804 TGTATCGATACAT
1 TGTATCGATACAT
12817 TGTATCGATACAT
1 TGTATCGATACAT
*
12830 T-T-T---T-CAA
1 TGTATCGATACAT
12837 TGTATCGATACAT
1 TGTATCGATACAT
12850 TGTATCGATACAT
1 TGTATCGATACAT
12863 CGATCTTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 3 0.08
8 2 0.05
9 1 0.03
11 1 0.03
12 2 0.05
13 29 0.76
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:12826 original size:33 final size:33
Alignment explanation
Indices: 12784--12862 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
12774 GCCAAGGAAA
12784 TGTATCGATACATTTTTCAATGTATCGATACAT
1 TGTATCGATACATTTTTCAATGTATCGATACAT
12817 TGTATCGATACATTTTTCAATGTATCGATACAT
1 TGTATCGATACATTTTTCAATGTATCGATACAT
12850 TGTATCGATACAT
1 TGTATCGATACAT
12863 CGATCTTTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTTTTCAATGTATCGATACAT
Found at i:12844 original size:53 final size:53
Alignment explanation
Indices: 12782--12882 Score: 141
Period size: 53 Copynumber: 1.9 Consensus size: 53
12772 CTGCCAAGGA
* **
12782 AATGTATCGATACATT-TTTCAATGTATCGATACATTGTATCGATACATTTTTC
1 AATGTATCGATACATTGTATCAATACATCGAT-CATTGTATCGATACATTTTTC
* *
12835 AATGTATCGATACATTGTATCGATACATCGATCTTTGTATCGATACAT
1 AATGTATCGATACATTGTATCAATACATCGATCATTGTATCGATACAT
12883 CTAGGAAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 31 0.74
54 11 0.26
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.41
Consensus pattern (53 bp):
AATGTATCGATACATTGTATCAATACATCGATCATTGTATCGATACATTTTTC
Found at i:12874 original size:33 final size:33
Alignment explanation
Indices: 12784--12882 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 33
12774 GCCAAGGAAA
***
12784 TGTATCGATACATTTTTCAATGTATCGATACAT
1 TGTATCGATACATCGATCAATGTATCGATACAT
***
12817 TGTATCGATACATTTTTCAATGTATCGATACAT
1 TGTATCGATACATCGATCAATGTATCGATACAT
**
12850 TGTATCGATACATCGATCTTTGTATCGATACAT
1 TGTATCGATACATCGATCAATGTATCGATACAT
12883 CTAGGAAGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATCGATCAATGTATCGATACAT
Found at i:15235 original size:51 final size:50
Alignment explanation
Indices: 15160--15338 Score: 182
Period size: 51 Copynumber: 3.5 Consensus size: 50
15150 AAATTTCTAG
* * * * *
15160 ATTTTTCAT-CTCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAGACATCA
1 ATTTTTCATAATCAGGGATACTCCAACT-CCGATTTTATTTCCAAAACA-CA
* * * *
15210 ATTTTTCTTAATCAGGGATACTCCAACTCTGATTTTATTTCTAAAACACCC
1 ATTTTTCATAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAACA-CA
* *
15261 ATTTTCCATAATTAGGGATACTCCAACTCCGATTTTATTTCCAAAACACTA
1 ATTTTTCATAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAACAC-A
* * *
15312 ACTTTTCACAATCAGAGATACTCCAAC
1 ATTTTTCATAATCAGGGATACTCCAAC
15339 CCCGTTATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
50 9 0.09
51 95 0.90
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (50 bp):
ATTTTTCATAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAACACA
Found at i:15512 original size:28 final size:28
Alignment explanation
Indices: 15480--15609 Score: 176
Period size: 28 Copynumber: 4.8 Consensus size: 28
15470 ATTCTCCACA
* * *
15480 ATCGGGGATATTCCAACTCCGATATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
15508 ATCGGGGATACTCCAACCCCGTTA-TTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
15535 --CGGGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
15561 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
***
15589 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
15610 GCTTTATTTC
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
25 21 0.23
26 3 0.03
27 3 0.03
28 64 0.70
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:15527 original size:79 final size:78
Alignment explanation
Indices: 15275--15527 Score: 271
Period size: 79 Copynumber: 3.2 Consensus size: 78
15265 TCCATAATTA
* * * * * *
15275 GGGATACTCCAACTCCGATTTTATTTCCAAAACACTAACTTTTCACAATCAGAGATACTCCAACC
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACACCAA-TTTTCACAATCGGAGATACTCCAACT
15340 CCGTTATTTC-TGAG
65 CCGTTATTTCAT-AG
* * * * *
15354 GGGACACTCCAA-CCCAGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGAAATACTCCAA-
1 GGGATACTCCAACCCCA-ATTTTATTTCTAAAACACCAA-TTTTCACAATCGGAGATACTCCAAC
15417 TCTCGTTATTTCCA-AG
64 TC-CGTTATTT-CATAG
* * *
15433 GGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATATTCCAACT
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATT-TTCACAATCGGAGATACTCCAACT
* *
15498 CCGATATTTCATCG
65 CCGTTATTTCATAG
15512 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
15528 GTTATTCCGG
Statistics
Matches: 144, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
78 7 0.05
79 130 0.90
80 7 0.05
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (78 bp):
GGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCACAATCGGAGATACTCCAACTC
CGTTATTTCATAG
Found at i:15540 original size:53 final size:54
Alignment explanation
Indices: 15482--15606 Score: 191
Period size: 53 Copynumber: 2.3 Consensus size: 54
15472 TCTCCACAAT
*
15482 CGGGGATATTCCAA-CTCCGATATTTCATCGGGGATACTCCAACCCCGTTA-TTC
1 CGGGGATACTCCAACCT-CGATATTTCATCGGGGATACTCCAACCCCGTTATTTC
*
15535 CGGGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
1 CGGGGATACTCCAACCTCGATATTTCATCGGGGATACTCCAACCCCGTTATTTC
15589 CGAGGGGATACTCCAACC
1 C--GGGGATACTCCAACC
15607 CCGGCTTTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
53 45 0.68
54 6 0.09
56 15 0.23
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.26
Consensus pattern (54 bp):
CGGGGATACTCCAACCTCGATATTTCATCGGGGATACTCCAACCCCGTTATTTC
Found at i:15658 original size:51 final size:51
Alignment explanation
Indices: 15592--15710 Score: 186
Period size: 51 Copynumber: 2.3 Consensus size: 51
15582 TTATTTCCGA
* * *
15592 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTTCAACCCCGACCTTATTTCCAAAATATTGATTTCTCACAATC
*
15643 GGGGATACTTCAACCCCGACCTTATTTCTAAAATATTGATTTCTCACAATC
1 GGGGATACTTCAACCCCGACCTTATTTCCAAAATATTGATTTCTCACAATC
15694 GGGGATAC-TCTAACCCC
1 GGGGATACTTC-AACCCC
15711 ATTATTTTCA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 2 0.03
51 61 0.97
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (51 bp):
GGGGATACTTCAACCCCGACCTTATTTCCAAAATATTGATTTCTCACAATC
Found at i:18613 original size:476 final size:476
Alignment explanation
Indices: 16820--19764 Score: 3548
Period size: 476 Copynumber: 6.2 Consensus size: 476
16810 CAATAGGATA
* ** * *
16820 AATGATCTTCATTCATTTTGTGATTAGGTGCTACAAACACATTCTCCTCATTGGGATAAATGATA
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * *
16885 CAT-ATGGTTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTGCCCTATTTTCTTTAAAATC
66 -TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT-TCC-A-------TAAAATC
* * *
16949 AATGTTCATCCCTCAAATAAGGCAAGCATTGATTCTCGTAACAGTCGCCATTCTTTTCAATATTG
121 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTG
* * * * *
17014 GGAACAAAAAACACATTCCCTTTATTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAATG
186 GGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAG
* * ** * *
17079 TTTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTACCTTTTAAAAAAGAAAAACATGAATAGT
251 GTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGT
* * * * **
17144 CACAATATTCCCTATTCTTTTCAAGGCTAGGCACCATAAACATAGTCTTCTCATAAGGATACATG
316 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATG
* *
17209 ATATTGATGCTTTGGTTACA-CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
381 ATATTGACGCTTTGGTTA-AGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
** *
17273 GTGTCTCATTTGCTCATTTGAGACAAACATGGATTCTAGG
445 GTG---C-----CTCAAATGAGACAAACATGGATTCTAGT
*
17313 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATA
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
17378 TTGATGA-TTTCATTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCATGAAATCAAAGTTCAT
66 TTGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAT
* ** * *
17442 CCCTTAAATAAGGCAAGCTTTGATTCTCGTAACAAACTCCATTTTTTTCAATATTGGGAGCCAAA
130 CCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAA
* * * * *
17507 AACGCGTTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTTGCAAGAAAAAGTTTTCTTT
195 AACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTT
** * * * * * *
17572 CCATAATTTTTTATAGAAACAAAATTTGTCTCTTAAATAAGACAAACATAAAT-GCCCATACTAA
260 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAG-TCATACTAA
* * * * * *
17636 TCCCTATTCATTTCAAGATTAAGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGAC
324 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGAC
* ** * *
17701 GATTTGGTTTCGCAAGAAAGGCTTTCTTCCTC-CCAATTTTTGAAAAGTCTAAGTTTGTGCCTCA
389 GCTTTGGTTAAGCAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* **
17765 AATGAGATAAACATTCATTCTAGT
453 AATGAGACAAACATGGATTCTAGT
***
17789 AATGATCTTCATTCATTTTGCAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * *
17854 TTGATG-CTTTCTTTTGC-TCGGATATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCAT
66 TTGATGATTTTCTTTTGCAT-GGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAT
* * *
17917 CCCTTAAATATGGCAAGCATCGATTCTCGTAACACTCTCCATTCTTTTCAATATTGGGAACCAAA
130 CCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAA
* * * * * *
17982 AACACATTCCCTTCGTTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAATGCTTTTTTTT
195 AACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTT
* * * * * * * * * *
18047 CCACCATTTTTGAGAGAATCAAAATTTGCCTTTTAAAAAAGAAAAACATGATTACTCACAGTATT
260 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAAT
* * ** * *
18112 CCCTATTCTTTTCAATACCAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATG
325 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACG
* * * ** * * *
18177 CTTTGGTTAAGCAACAAAGTCTTTCTTCACACCAACATTCGTAAAGTCTATA-TTCATGTCTCAA
390 CTTTGGTTAAGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA-AGTTCGTGCCTCAA
* * *
18241 ATAAGACAAACAAGGATTCTAGG
454 ATGAGACAAACATGGATTCTAGT
*
18264 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATA
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
18329 TTGATGATTTTCTTTTGCTTGGAAATCTATTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATC
** ** * *
18394 CCTTAAATAAAACAAGCATCAATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
131 CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAA
* * *
18459 ACATATTCCCTTCATTAAGATACCA-GACATTGATGCTTTGGTGTTGTAAGAAAAGGTTTTCTGT
196 ACACATTCCCTTCATTAAGATA-CATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTT
* * * ** * *
18523 CCACCATTTTTCATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACAAAAATAGGCATGCTAAT
260 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAAT
* * * *
18588 CCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACACGATATTGACG
325 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACG
* *
18653 CTTTGGTTATGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
390 CTTTGGTTAAGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* *
18718 TGAGACAAACCTGAATTCTAGT
455 TGAGACAAACATGGATTCTAGT
* * *
18740 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAACGATA
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * *
18805 CTGATGATTTTCTTTTGCATGG-AATCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTAATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATC
* * * * * *
18869 CCTTAAATAAGGCAAGCATTGATTCCCGTACCAATCTACATTCTTTTCAACATTGAGAACCAAAA
131 CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAA
* * * * * *
18934 ACACATTCCTTTCATTAGGATACAAGACATTGAAGCTTTGGTTTTGCAAGAAAAGGTTTTCTGTC
196 ACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTC
*
18999 CACCATATTTT-ATAGAATCAAAG-TT-TCTCTTAAAAAAGACAAACATGAATAGTCATTCTAAT
261 CACCAT-TTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAAT
* * * *
19061 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACAAGATATTGATG
325 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACG
* * * * *
19126 CTTTGGTTATGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAATCTAAATTCGTGCCGCAAA
390 CTTTGGTTAAGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
**
19191 CAAGACAAACATGGATTCTAGT
455 TGAGACAAACATGGATTCTAGT
* * * *
19213 AATGATCTTCATTCATTTTATGATTAGGCACAATAAACAAATTCTCCAT-ATTAAGATAAATAAT
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGAT
* * * *
19277 ATTGATGATTTT-TTTTACAGGGAAATCTTTTCTTTACCCTATTTTTCATAAAATCAAAGTTCAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAT
* * * * * * * *
19341 TCTTTAAATCAGGCAAGCTTTGATTCTCGTAATAGTTTCCATTCTTTTCAATATGGGGAACCGAA
130 CCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAA
* * *
19406 AACACATTCCCTTCTTTAAGATACATGACATTTATGCTTTGGGGTTGCAAGAAAAGGTTTTCTTT
195 AACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTT
* * * ** *
19471 CCACTATTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACCCAAACTAA
260 CCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAA
* * *
19536 TCCCCATT-TATTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTGG
324 TCCCCATTCT-TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGA
* * * * * * * **
19600 CACTTTGGCTT-CGTAAGAAAGGCTTTTTTCCTACCAATTTTTGTGAAGTCTAAGTTCATATCTC
388 CGCTTTGG-TTAAGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* *
19664 AAATGTGACAAACATAGATTCTAGT
452 AAATGAGACAAACATGGATTCTAGT
* * * * **
19689 AATGATCTTCATTCAATTTGTGATTAGGCACAATAAACACATTCTCCTTATTAAAATAAATGATA
1 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
19754 CTGATGATTTT
66 TTGATGATTTT
19765 TTTGTTATAG
Statistics
Matches: 2105, Mismatches: 322, Indels: 67
0.84 0.13 0.03
Matches are distributed among these distances:
472 8 0.00
473 391 0.19
474 20 0.01
475 562 0.27
476 738 0.35
477 5 0.00
481 1 0.00
483 1 0.00
484 279 0.13
485 1 0.00
491 1 0.00
492 7 0.00
493 91 0.04
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (476 bp):
AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATC
CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAA
ACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTC
CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAATC
CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGC
TTTGGTTAAGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGT
Found at i:18669 original size:951 final size:946
Alignment explanation
Indices: 16820--19768 Score: 3883
Period size: 951 Copynumber: 3.1 Consensus size: 946
16810 CAATAGGATA
** * *
16820 AATGATCTTCATTCATTTTGTGATTAGGTGCTACAAACACATTCTCCTCATTGGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
16885 CAT-ATGGTTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTGCCCTATTTTCTTTAAAATC
66 C-TGAT-GTTTTCTTTTGCATG-GAATC---T-TTT---C--TTTGCCCTATTTTCCTTAAAATC
* * *
16949 -AATGTTCATCCCTCAAATAAGGCAAGCATTGATTCTCGTAACAGTCGCCATTCTTTTCAATATT
119 GAA-GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAATATT
* *
17013 GGGAACAAAAAACACATTCCCTTTATTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAAT
183 GGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAAT
17078 GTTTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTACCTTTTAAAAAAGAAAAACATGAATAG
248 GTTTTT-TTTCCACCATTTTTGAGAGAATCAAAGTTT-CCTTTTAAAAAAGAAAAACATGAATAG
*
17143 TCACAATATTCCCTATTCTTTTCAAGGCTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT
311 TCACAATATTCCCTATTCTTTTCAAGACTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT
17208 GATATTGATGCTTTGGTTACA-CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
376 GATATTGATGCTTTGGTTA-AGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA-TT
* *
17272 CGTGTCTCATTTGCTCATTTGAGACAAACATGGATTCTAGGAATGATCTTCATTCATTTTATGAT
439 CGTGTCTCA-------A-ATAAGACAAACATGGATTCTAGGAATGATCTTCATTCATTTTATGAT
17337 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGA-TTTCATTTTGCATGGA
496 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTC-TTTTGCATGGA
* *
17401 AATCTTTTATTTGCCCTATTTTCCATGAAATCAAAGTTCATCCCTTAAATAAGGCAAGCTTTGAT
560 AATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCTTTGAT
** * * * * * *
17466 TCTCGTAACAAACTCCATTTTTTTCAATATTGGGAGCCAAAAACGCGTTCCCTTCATTAGGATAA
625 TCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAACACATTCCCTTCATTAAGATAC
* * * *
17531 ATGACATTGATGCTTTGGTGTTGCAAGAAAAAGTTTTCTTTCCATAATTTTTTATAGAAACAAAA
690 ATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACAATTTTTTATAGAATCAAAG
* *
17596 TTTGTCTCTTAAATAAGACAAACATAAAT-GCCCATACTAATCCCTATTCATTTCAAGATTAAGC
755 TTTGTCTCTTAAATAAGACAAACATAAATAG-CCATACTAATCCCCATTCATTTCAAGATTAGGC
* * *
17660 ACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGACGATTTGGTTTCGCAAGAAAGGCTT
819 ACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTT-GCAAGAAAGGCTT
* * * **
17725 TCTTCCTCCCAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGATAAACATTCATTCTAGT
883 TCTTCCTCCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAAATTCTAGT
**
17789 AATGATCTTCATTCATTTTGCAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
17854 TTGATGCTTTCTTTTGC-TCGGATATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATC
66 CTGATGTTTTCTTTTGCAT-GGA-ATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATC
* * *
17918 CCTTAAATATGGCAAGCATCGATTCTCGTAACACTCTCCATTCTTTTCAATATTGGGAACCAAAA
129 CCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAATATTGGGAACCAAAA
*
17983 ACACATTCCCTTCGTTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAATGCTTTTTTTTC
194 ACACATTCCCTTCATTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAATG-TTTTTTTTC
* * * *
18048 CACCATTTTTGAGAGAATCAAAATTTGCCTTTTAAAAAAGAAAAACATGATTACTCACAGTATTC
258 CACCATTTTTGAGAGAATCAAAGTTT-CCTTTTAAAAAAGAAAAACATGAATAGTCACAATATTC
* * *
18113 CCTATTCTTTTCAATACCAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGC
322 CCTATTCTTTTCAAGACTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGC
* * ** * *
18178 TTTGGTTAAGCAACAAAGTCTTTCTTCACACCAACATTCGTAAAGTCTATATTCATGTCTCAAAT
387 TTTGGTTAAGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA-ATTCGTGTCTCAAAT
*
18243 AAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTC
451 AAGACAAACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTC
* * * *
18308 TCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTATTCTTTGCCCTATTT
516 TCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
** * ** *
18373 TCCATAAAATCAAAGTTCATCCCTTAAATAAAACAAGCATCAATTCTTGTAACAGTCTCCATTCT
581 TCCATAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCTTTGATTCTCGTAACAGTCTCCATTCT
* *
18438 TTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAAGATACCA-GACATTGATGCTTTGGTG
646 TTTCAATATTGGGAACCAAAAACACATTCCCTTCATTAAGATA-CATGACATTGATGCTTTGGTG
* * * * *
18502 TTGTAAGAAAAGGTTTTCTGTCCACCATTTTTCATAGAATCAAAGTTTTTCTCTTAAATAAGACA
710 TTGCAAGAAAAGGTTTTCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * *
18567 AACAAAAATAGGCATGCTAATCCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTATTCTCA
775 AACATAAATAGCCATACTAATCCCCATTCATTTCAAGATTAGGCACCATAAACATAGTCTTCTCA
18632 TAAGGATACACGATATTGACGCTTTGGTTATGCAAGAAAGGCTTTCTTCC-CTCCAATTTTTGTA
840 TAAGGATACACGATATTGACGCTTTGGTT-TGCAAGAAAGGCTTTCTTCCTC-CCAATTTTTGTA
* *
18696 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACCTGAATTCTAGT
903 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAAATTCTAGT
* * * *
18740 AATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAACGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
18805 CTGATGATTTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-GAAAGTTAATC
66 CTGATG-TTTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCG-AAGTTCATC
* * * * *
18869 CCTTAAATAAGGCAAGCATTGATTCCCGTACCAATCTACATTCTTTTCAACATTGAGAACCAAAA
129 CCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAATATTGGGAACCAAAA
* * * * * * * * * *
18934 ACACATTCCTTTCATTAGGATACAAGACATTGAAGCTTTGGTTTTGCAAGAAAAGGTTTTCTGTC
194 ACACATTCCCTTCATTAAGATACATGACATTGATGCCTTGGTGTCGCAAG-AAATGTTTTTTTTC
* * * *** *
18999 CACCATATTTT-ATAGAATCAAAGTTT-CTCTTAAAAAAGACAAACATGAATAGTCATTCTAATC
258 CACCAT-TTTTGAGAGAATCAAAGTTTCCTTTTAAAAAAGAAAAACATGAATAGTCACAATATTC
* * * * *
19062 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACAAGATATTGATGC
322 CCTATTCTTTTCAAGACTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGC
* * * * * * *
19127 TTTGGTTATGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAATCTAAATTCGTGCCGCAAAC
387 TTTGGTTAAGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT-AATTCGTGTCTCAAAT
* * *
19192 AAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACAATAAACAAATTC
451 AAGACAAACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTC
* * * *
19257 TCCAT-ATTAAGATAAATAATATTGATGATTTT-TTTTACAGGGAAATCTTTTCTTTACCCTATT
516 TCC-TCATTAGGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * * *
19320 TTTCATAAAATCAAAGTTCATTCTTTAAATCAGGCAAGCTTTGATTCTCGTAATAGTTTCCATTC
580 TTCCATAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCTTTGATTCTCGTAACAGTCTCCATTC
* * * * *
19385 TTTTCAATATGGGGAACCGAAAACACATTCCCTTCTTTAAGATACATGACATTTATGCTTTGGGG
645 TTTTCAATATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTG
*
19450 TTGCAAGAAAAGGTTTTCTTTCCACTATTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAC
710 TTGCAAGAAAAGGTTTTCTTTCCAC-AATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
19515 AAACATGAATACCCAAACTAATCCCCATTTATTTCAAGATTAGGCACCATAAACGTAGTCTTCTC
774 AAACATAAATAGCCATACTAATCCCCATTCATTTCAAGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * * * *
19580 ATAAGGATGCATGATATTGGCACTTTGGCTTCGTAAGAAAGGCTTTTTTCCTACCAATTTTTGTG
839 ATAAGGATACACGATATTGACGCTTTGG-TTTGCAAGAAAGGCTTTCTTCCTCCCAATTTTTGTA
* ** * *
19645 AAGTCTAAGTTCATATCTCAAATGTGACAAACATAGATTCTAGT
903 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAAATTCTAGT
* * * **
19689 AATGATCTTCATTCAATTTGTGATTAGGCACAATAAACACATTCTCCTTATTAAAATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
19754 CTGATGATTT-TTTTG
66 CTGATGTTTTCTTTTG
19769 TTATAGTCTC
Statistics
Matches: 1742, Mismatches: 215, Indels: 68
0.86 0.11 0.03
Matches are distributed among these distances:
947 7 0.00
948 160 0.09
949 466 0.27
950 6 0.00
951 662 0.38
952 29 0.02
953 1 0.00
958 1 0.00
959 318 0.18
960 8 0.00
961 1 0.00
964 3 0.00
965 1 0.00
967 2 0.00
968 16 0.01
969 61 0.04
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (946 bp):
AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
CTGATGTTTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCC
TTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAATATTGGGAACCAAAAAC
ACATTCCCTTCATTAAGATACATGACATTGATGCCTTGGTGTCGCAAGAAATGTTTTTTTTCCAC
CATTTTTGAGAGAATCAAAGTTTCCTTTTAAAAAAGAAAAACATGAATAGTCACAATATTCCCTA
TTCTTTTCAAGACTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTG
GTTAAGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAATTCGTGTCTCAAATAAGAC
AAACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCAT
AAAATCAAAGTTCATCCCTTAAATAAGGCAAGCTTTGATTCTCGTAACAGTCTCCATTCTTTTCA
ATATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAA
GAAAAGGTTTTCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATA
AATAGCCATACTAATCCCCATTCATTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
TACACGATATTGACGCTTTGGTTTGCAAGAAAGGCTTTCTTCCTCCCAATTTTTGTAAAGTCTAA
GTTCGTGCCTCAAATGAGACAAACATAAATTCTAGT
Found at i:18769 original size:158 final size:158
Alignment explanation
Indices: 17157--19251 Score: 508
Period size: 158 Copynumber: 13.2 Consensus size: 158
17147 AATATTCCCT
* ** * * *
17157 ATTCTTTTCAAGGCTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTT
1 ATTCTTTTCATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAAGATATTGATGCTTT
** * * * *
17222 GGTTACACAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCATTTGCT
66 GGTTATGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAATCAAAGTTCGTG---C-----CT
** * * * *
17287 CATTTGAGACAAACATGGATTCTAGGAATGATCTTC
123 CAAATAAGACAAACATGAATTCTAGTAATAATCTTC
* * * * * * *
17323 ATTCATTTT-ATGATTAGGCACTATAAACACATTCTCCTCATTAGGATA-AATAATATTGATGAT
1 ATTC-TTTTCATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAA-GATATTGATGCT
** * * * * ** * ** * * * *
17386 TTCATTTTGCATGGAAA-TCTTTTATTTGC-CCTATTTTCCATGAAATCAAAGTTCATCCCTTAA
64 TTGGTTATGCA-AGAAAGGC-TTTCTTCCCTCCAATTTT-TGTAAAATCAAAGTTCGTGCCTCAA
* * * * * * *
17449 ATAAGGCAAGCTTTG-ATTCTCGTAACAAACTCC
126 ATAAGACAAAC-ATGAATTCTAGTAATAATCTTC
* * * * * * *
17482 ATTTTTTTCAAT-ATT-GGGAGCCAAAAACGC-GT-TCCCTTCATTAGGATA-AATGACATTGAT
1 ATTCTTTTC-ATGATTAGGCA-CCATAAACACAGTAT-TC-TCATAAGGATACAA-GATATTGAT
* * * * * *
17542 GCTTTGGTGT-TGCAAGAAAAAGTTTTCTTTCCAT--AATTTTT-TATAGAAACAAAATTTGT-C
61 GCTTTGGT-TATGCAAG-AAAGGCTTTC-TTCCCTCCAATTTTTGTA-A-AATCAAAGTTCGTGC
* * * * * *
17602 TCTTAAATAAGACAAACATAAATGCCCA-TACTAATC-CC
121 -CTCAAATAAGACAAACATGAAT-TCTAGTAATAATCTTC
* * * * * * * * * *
17640 TATTCATTTCAAGATTAAGCACCATAAGCATAGTCTTCTCGTAAGGATACACGATATTGACGATT
1 -ATTCTTTTCATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAAGATATTGATGCTT
* *
17705 TGGTT-TCGCAAGAAAGGCTTTCTT-CCTCCCAATTTTTG-AAAAGTCTAAGTTTGTGCCTCAAA
65 TGGTTAT-GCAAGAAAGGCTTTCTTCCCT-CCAATTTTTGTAAAA-TCAAAGTTCGTGCCTCAAA
* * ** *
17767 TGAGATAAACATTCATTCTAGTAATGATCTTC
127 TAAGACAAACATGAATTCTAGTAATAATCTTC
* * * * *
17799 ATTCATTTTGCA--ATTAGGCACTATAAACACATTCTCCTCATTAGGATA-AATGATATTGATGC
1 ATTC-TTTT-CATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAA-GATATTGATGC
* * ** * * ** * * * * *
17861 TTT-CTTTTGCTCGGATA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCGAAGTTCATCCCTT
63 TTTGGTTATGC-AAGAAAGGC-TTTCTTCCCTCCAATTTT--TGTAAAATCAAAGTTCGTGCCTC
* * * * * * *
17922 AAATATGGCAAGCATCG-ATTCTCGTAACACTCTCC
124 AAATAAGACAAACAT-GAATTCTAGTAATAATCTTC
* * * * * * *
17957 ATTCTTTTCAAT-ATTGGGAACCAAAAACACA-T-TCCCTTCGTTAA-GATACATGACATTGATG
1 ATTCTTTTC-ATGATTAGGCACCATAAACACAGTAT-TC-TC-ATAAGGATACAAGATATTGATG
* * * * * * *
18018 CCTTGGTGT-CGCAAGAAATGCTTTTTTTTCCACC-ATTTTTG-AGAGAATCAAAATT--TGCCT
62 CTTTGGT-TATGCAAGAAAGGC-TTTCTTCCCTCCAATTTTTGTA-A-AATCAAAGTTCGTGCC-
* * * * * * *
18078 TTTAAAAAAGAAAAACATG-ATTACTCA-CAGTATTC-CC
122 -TCAAATAAGACAAACATGAATT-CT-AGTAATAATCTTC
** * * * *
18115 TATTCTTTTCAAT-ACCAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCT
1 -ATTCTTTTC-ATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAAGATATTGATGCT
* * * * * ** * * * * *
18179 TTGGTTAAGCAACAAAGTCTTTCTTCACACCAACATTCGTAAAGTCTATA-TTCATGTCTCAAAT
64 TTGGTTATGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAATC-AAAGTTCGTGCCTCAAAT
* * * *
18243 AAGACAAACAAGGATTCTAGGAATGATCTTC
128 AAGACAAACATGAATTCTAGTAATAATCTTC
* * * * *
18274 ATTCATTTT-ATGATTAGGCACTATAAACACATTCTCCTCA-ATAGGATA-AATGATATTGATGA
1 ATTC-TTTTCATGATTAGGCACCATAAACACAGTATTCTCATA-AGGATACAA-GATATTGATGC
** * ** * ** * ** * * *
18336 TTTTCTTTTGCTTGGAAA-TCTATTCTTTGC-CCTATTTTCCATAAAATCAAAGTTCATCCCTTA
63 TTTGGTTATGC-AAGAAAGGCT-TTCTTCCCTCCAATTTT-TGTAAAATCAAAGTTCGTGCCTCA
* * * * * * *
18399 AATAAAACAAGCATCAATTCTTGTAACAGTCTCC
125 AATAAGACAAACATGAATTCTAGTAATAATCTTC
* * * * *
18433 ATTCTTTTCAAGATTGGGAACCA-AAA-ACA-TATTCCCTTCATTAA-GATACCAGACATTGATG
1 ATTCTTTTCATGATTAGGCACCATAAACACAGTATT--C-TCA-TAAGGATACAAGATATTGATG
* * * * * * *
18494 CTTTGGTGT-TGTAAGAAAAGGTTTTCTGT-CCACC-ATTTTTCATAGAATCAAAGTT-TTTCTC
62 CTTTGGT-TATGCAAG-AAAGGCTTTCT-TCCCTCCAATTTTT-GTAAAATCAAAGTTCGTGC-C
* ** * ** **
18555 TTAAATAAGACAAACAAAAATAGGC-A-TGCTAATCCCC
122 TCAAATAAGACAAACATGAAT--TCTAGTAATAATCTTC
* * * * *
18592 ATTCCTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACACGATATTGACGCTTT
1 ATTCTTTTCATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAAGATATTGATGCTTT
* * *
18657 GGTTATGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
66 GGTTATGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAATCAAAGTTCGTGCCTCAAATAAG
* *
18722 ACAAACCTGAATTCTAGTAATGATCTTC
131 ACAAACATGAATTCTAGTAATAATCTTC
* * * * * * *
18750 ATTCATTTT-ATGATTAGGCACTATAAACACATTCTCCTTA-ATAGGATA-AACGATACTGATGA
1 ATTC-TTTTCATGATTAGGCACCATAAACACAGTATTCTCATA-AGGATACAA-GATATTGATGC
** * * * * ** * * ** * *
18812 TTTTCTTTTGCATGGAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATGAAAGTTAATCCCTTA
63 TTTGGTTATGCAAGAAAGGC-TTTCTTCCCTCCAATTTT--TGTAAAATCAAAGTTCGTGCCTCA
* * ** ** *
18874 AATAAGGCAAGCATTG-ATTCCCGTACCAATCTAC
125 AATAAGACAAACA-TGAATTCTAGTAATAATCTTC
** * * * * * * *
18908 ATTCTTTTCAACATT-GAGAACCAAAAACACATTCCTT-TCATTAGGATACAAGACATTGAAGCT
1 ATTCTTTTCATGATTAG-GCACCATAAACACAGT-ATTCTCATAAGGATACAAGATATTGATGCT
* * * * * *
18971 TTGGTTTTGCAAGAAAAGGTTTTCTGT-CCACC-ATATTTTATAGAATCAAAGTT--T-CTCTTA
64 TTGGTTATGCAAG-AAAGGCTTTCT-TCCCTCCAAT-TTTTGTAAAATCAAAGTTCGTGC-CTCA
* ** **
19031 AAAAAGACAAACATGAATAGTC-A-TTCTAATCCCC
125 AATAAGACAAACATGAAT--TCTAGTAATAATCTTC
* *
19065 ATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACAAGATATTGATGCTTT
1 ATTCTTTTCATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAAGATATTGATGCTTT
* *
19130 GGTTATGCAAGAAAGGCTTTCTTCCCAT-CAATTTTTGTAAAATCTAAA-TTCGTGCCGCAAACA
66 GGTTATGCAAGAAAGGCTTTCTTCCC-TCCAATTTTTGTAAAATC-AAAGTTCGTGCCTCAAATA
* *
19193 AGACAAACATGGATTCTAGTAATGATCTTC
129 AGACAAACATGAATTCTAGTAATAATCTTC
*
19223 ATTCATTTT-ATGATTAGGCACAATAAACA
1 ATTC-TTTTCATGATTAGGCACCATAAACA
19252 AATTCTCCAT
Statistics
Matches: 1384, Mismatches: 400, Indels: 298
0.66 0.19 0.14
Matches are distributed among these distances:
155 1 0.00
156 39 0.03
157 149 0.11
158 545 0.39
159 512 0.37
160 42 0.03
161 6 0.00
162 4 0.00
164 1 0.00
165 1 0.00
166 59 0.04
167 25 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (158 bp):
ATTCTTTTCATGATTAGGCACCATAAACACAGTATTCTCATAAGGATACAAGATATTGATGCTTT
GGTTATGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAATCAAAGTTCGTGCCTCAAATAAG
ACAAACATGAATTCTAGTAATAATCTTC
Found at i:20126 original size:397 final size:398
Alignment explanation
Indices: 19372--20138 Score: 1074
Period size: 397 Copynumber: 1.9 Consensus size: 398
19362 GATTCTCGTA
* *
19372 ATAGTTTCCATTCTTTTCAATATGGGGAACCGAAAACACATTCCCTTCTTTAAGATACATGACAT
1 ATAGTCTCCATTCTTTTCAATATGGGGAACCAAAAACACATTCCCTTCTTTAAGATACATGACAT
* ** * * * *
19437 TTATGCTTTGGGGTTGCAAGAAAAGGTTTTCTTTCCACTATTTTTTTATAGAATCAAAGTTTGTC
66 TGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCAACTAGTTTTTGATAGAATCAAAGTTTGTC
* *
19502 TCTTAAATAAGACAAACATGAATACCCAAACTAATCCCCATTTATTTCAAGATTAGGCACCATAA
131 TCTTAAATAAGACAAACATGAATACCC-AACTAATCCCCATTCATTTCAAGATTAGGCACCACAA
* * * * *
19567 ACGTAGTCTTCTCATAAGGATGCATGATATTGGCACTTTGGCTTCGTAAGAAAGGCTTTTTTCCT
195 ACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGCTTCGCAAGAAAGGCTTTTTTCCC
* * ** *
19632 ACCAATTTTTGTGAAGTCTAAGTTCATATCTCAAATGTGACAAACATAGATTCTAGTAATGATCT
260 ACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATAGATTCTAGAAATGATCT
*
19697 TCATTCAATTTGTGATTAGGCACAATAAACACATTCTCCTTATTAAAATAAATGATACTGATGAT
325 TCATTCAATTTGTGATTAGGCACAATAAACACATTCTCCTCATTAAAATAAATGATACTGATGAT
19762 TTTTTTGTT
390 TTTTTTGTT
* * *
19771 ATAGTCTCCATTCTTTTCAATATTGGGAACCAAAAACATATTCCCTT-TATTAGGATACATGACA
1 ATAGTCTCCATTCTTTTCAATATGGGGAACCAAAAACACATTCCCTTCT-TTAAGATACATGACA
* * *
19835 TTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCAAC-CGTTTTTGATAGAATCAAAGTTTGT
65 TTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCAACTAGTTTTTGATAGAATCAAAGTTTGT
* * * *
19899 CTTTTAAATAAGGCAAACATGAATACCC-A-TAATCCCCATTCGTTTCAAGATTAGGCACTACAA
130 CTCTTAAATAAGACAAACATGAATACCCAACTAATCCCCATTCATTTCAAGATTAGGCACCACAA
* * ** * *
19962 ACATAGTCTTCTCATTAGGATACATGGTATTGATTCTTTGGTTTTGCAAGAAAGGCTTTTTTTCC
195 ACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGCTTCGCAAGAAAGGC-TTTTTTCC
* * *
20027 CACCAATTTTTTGTAAAGTCTAGGTTCATGCCTCAAATAAGACAAACATGGATTCTAGAAATGAT
259 CACCAA-TTTTTGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATAGATTCTAGAAATGAT
* * *
20092 CTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
323 CTTCATTCAATTTGTGATTAGGCACAATAAACACATTCTCCTCATTA
20139 GGATAAATAA
Statistics
Matches: 321, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
395 76 0.24
396 14 0.04
397 93 0.29
398 49 0.15
399 89 0.28
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (398 bp):
ATAGTCTCCATTCTTTTCAATATGGGGAACCAAAAACACATTCCCTTCTTTAAGATACATGACAT
TGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCAACTAGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACATGAATACCCAACTAATCCCCATTCATTTCAAGATTAGGCACCACAAA
CATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGCTTCGCAAGAAAGGCTTTTTTCCCA
CCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATAGATTCTAGAAATGATCTT
CATTCAATTTGTGATTAGGCACAATAAACACATTCTCCTCATTAAAATAAATGATACTGATGATT
TTTTTGTT
Found at i:20855 original size:448 final size:453
Alignment explanation
Indices: 20023--21111 Score: 1182
Period size: 448 Copynumber: 2.4 Consensus size: 453
20013 AAGGCTTTTT
* * *
20023 TTCCCACCAATTTTTTGTAAAGTCTAGGTTCATGCCTCAAATAAGACAAACATGGATTCTAGAAA
1 TTCCCACCAA-TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGGAA
* * *
20088 TGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT-AAATT
65 TGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * * * * * * *
20152 AATGAGTTTCATTTGCATGGAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAATTCATCCT
130 GATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTATTTTCCATAAAATCAAAGTTCATCCC
* * ** * * * **
20217 TTAAATAAGACAAACAACGATTCTCGTAGCAGTCTCCATTCTCTTCAAGATTGAAAACCAAAAAC
195 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAAC
* * * ** ** *
20282 ACGA-T-CCTTCATGAGGATACACGACATTAATGCTTAAGTGTCACAAGAAAA-GCTTT-TTTCC
260 AC-ATTCCCTTCAT---TATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCC
* ** *
20343 -CCCTTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATAG-TCACACTAAT
321 ACCATTTTTT-ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-GCCCACACTAAT
** * *
20406 CCTTATTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTAGGATAC-A-TGCTTTGGT
384 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAATTGCTTTGGT
20469 -TTT-
449 ATTTA
*
20472 TTCCCACCATTTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGGAAT
1 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGGAAT
* ** *
20537 GATCTTCATTTATTTTATGATTAGAG-ACTATAAACACATTCTCCTCACCAGGATAAATGACATT
66 GATCTTCATTCATTTTATGATTAG-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * *
20601 GATAATTTTCTTTTGCATCAAAATCTTTTATTTGCCCTATTTTTCATAAAATCAAAGTTCACCCC
130 GATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTATTTTCCATAAAATCAAAGTTCATCCC
* * * *
20666 TTAAATCAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTTTTCAATATTGGGAACCAAAAAC
195 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAAC
*
20731 ACATTCCCTTCATT-TACATGACATTGATGCTTAGGTGTTGCAAGAAAAGGTTTTCTTTCCACCA
260 ACATTCCCTTCATTATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCA
* * * * *
20795 TTTTTTATAGAATCTAAGTTTATCTCATAAATAAGACAAACACGAATGCCCACACTAATCCACAT
325 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCACACTAATCCCCAT
* * *
20860 TCGTTTCAAGATTAGGCACCATAAGCATACTCTTCTCATAAGGATACATGATATTGATGCTTTGG
390 TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC---A-A-T--TGCTTTGG
20925 T-TTTGCAAGAAA
448 TATTT-------A
20937 GGCTCTCTTTCCACCAATTTTTGTAAAGTCTAAGTTCGA-GCCTCAAATGAGACAAACATGGATT
1 ---T-TC---CCACCAATTTTTGTAAAGTCTAAGTTC-ATGCCTCAAATGAGACAAACATGGATT
* * * * *
21001 CTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGCTAAA
58 CTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* *
21066 TGATACTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
123 TGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTA
21112 GGAAGCATTG
Statistics
Matches: 536, Mismatches: 70, Indels: 45
0.82 0.11 0.07
Matches are distributed among these distances:
446 29 0.05
447 5 0.01
448 201 0.38
449 129 0.24
450 7 0.01
453 1 0.00
457 12 0.02
468 1 0.00
469 2 0.00
471 1 0.00
472 147 0.27
473 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (453 bp):
TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGGAAT
GATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
ATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCT
TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAACA
CATTCCCTTCATTATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCAT
TTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCACACTAATCCCCATT
CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAATTGCTTTGGTATTTA
Found at i:22494 original size:158 final size:156
Alignment explanation
Indices: 21857--23599 Score: 561
Period size: 158 Copynumber: 11.0 Consensus size: 156
21847 TGTAAAGTAT
* * * * * *
21857 AAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGGAATGAT-TTCATTCATTATATGATTA
1 AAGTTCGT-CTCTCAAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTATGATTA
* * * ** *
21920 GGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAAT
65 GGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGC-AAGAAAG
* *
21985 CTTTTCATTGCCCTATTTTCCTTAAAATCA
129 CTTTTCTTTGCCCCATTTT--TTAAAATCA
* * * * * **
22015 AAGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTACCAATCTCCATTC-TTTTCGAT-ATT
1 AAGTTCGTCTCTCAAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTT--ATGATT
* * * * * * * * *
22078 GGGAACCAAAAACACATTC-CCTTTATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAA
64 AGGCACCATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAG-AA
*
22142 AGGTTTTCTTT-CCACCATTTTTTATAGAATCA
127 AGCTTTTCTTTGCC-CCATTTTTTA-A-AATCA
* * * * * * * *
22174 AAGTTTGTCTCTTAAATAAGACAAACA-TGAATGCCCA-TACTAATCCCCATTCATTTCAAGATT
1 AAGTTCGTCTCTCAAATAAGACAAACATTG-AT-TCTAGTAATAATCTCCATTCATTTTATGATT
* * * * * * * * * *
22237 AGGCACCATAAGCATAATCTTCTCATAAGGATACATGATATTAATGCTTTGGTTTCGCAAGAAAG
64 AGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAGAAAG
** * * *
22302 GATTTCTTCCT-CCCAATTTTTGTAAAGTCT
129 CTTTTCTT--TGCCCCATTTTT-TAAAATCA
* * * *
22332 AAGTTCGTGC-CTCAAATAAGATAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
1 AAGTTCGT-CTCTCAAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTATGATTA
* * * * * *
22396 GGCTCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACTTAGAAAT
65 GGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGC-AAGAAAG
22461 CTTTT-TTTGCCCCATTTTCCTTAAAATCA
129 CTTTTCTTTGCCCCATTTT--TTAAAATCA
** * * * * *
22490 AAGTTTATC-CTTTAAATGAGGCAAGCATTGATTCTCA-TAATAGTCTCCATTC-TTTTCAAT-A
1 AAGTTCGTCTC-TCAAATAAGACAAACATTGATTCT-AGTAATAATCTCCATTCATTTT--ATGA
* * * * * * * * * * * ** *
22551 TCAGGAACAAAAAACACATTC-CGTTTATTAGGATACATGAAATTGATGCTTTGGTGTCACAAAA
62 TTAGGCACCATAAACACATTCTC-CTCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAGA
** *** * * * *
22615 AATGC----CCAT-AAACATTGGTGTCACAACTGTTA
126 AA-GCTTTTCTTTGCCCCATT--TTTTA-AA--ATCA
* * * * * * * *
22647 AAGTTTGTCTCTTAAATAAGACAAACA-TGTATACCCA-TACTAATCCCCATTCATTTCAAGATT
1 AAGTTCGTCTCTCAAATAAGACAAACATTG-AT-TCTAGTAATAATCTCCATTCATTTTATGA-T
* * * * * * * * * *
22710 TAGGCACCATAAACATAGTGTTCTCATAAGGATACATGATATTGA-CACTTTGGTTTCGTAAGAA
63 TAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTGCTTTTGCAAGAA
* * ** *
22774 A--TGATT-TTTCCCACCAAATTTGGTAAATTCTA
127 AGCT-TTTCTTTGCC-CC--ATTTTTTAAAATC-A
* * ** * * *
22806 AA-TTCATATCTCAAATAAGACAAACAAGGATTCTAGCAATGATC-CTCGTTCATTTTATGATTA
1 AAGTTCGTCTCTCAAATAAGACAAACATTGATTCTAGTAATAATCTC-CATTCATTTTATGATTA
* * * * * * *
22869 GGCACTATAAACAAATTCTCCACATTAGGATAAATGATATTGATGATTTTCTTTTACAGGAAAAT
65 GGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAG-AAAG
* *
22934 CTTTTCTTTGCCCTATTTTCCATAAAATCA
129 CTTTTCTTTGCCCCATTTT--TTAAAATCA
* * * * * * * * *
22964 AAGTTCATCTCTTAAATCAGGCAAGCTTTGATTCTTGTAATAGTCTCCATTC-TTTTCAAT-ATG
1 AAGTTCGTCTCTCAAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTT--ATGATT
* * * * * * * ***
23027 GGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTTATGCTTTGGGGTTGCAAGAAA
64 AGGCACCATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAG-AA
*
23091 AGGTTTTCTTT-CCACCATTTTTTTATAGAATCA
127 AGCTTTTCTTTGCC-CCA-TTTTTTA-A-AATCA
* * * * * ** * *
23124 AAGTTCGTCTCTTAAATAAGACAAAC-GTGAATACCCA--AACTAATCCCCATTTGTTTCAAGAT
1 AAGTTCGTCTCTCAAATAAGACAAACATTG-AT-TCTAGTAA-TAATCTCCATTCATTTTATGAT
* * * * * * ** * * * * *
23186 TAGGCACCATAAACATAGTCTTCTCGTAAGGATACACAATATTAACGCTTTAGC-TTCGTAAGAA
63 TAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT-GCTTTTGCAAGAA
* * * * *
23250 AGCCTTTC-TTCCCACCAAATTTTGTAAATTCT
127 AGCTTTTCTTTGCC-CC--ATTTTTTAAAATCA
* ** * * * * * * *
23282 ATGTTCGTGGCTCAAATGAGACTAACATGGATTCCAGGAA-AGATCTTCTTTCATTTTATGATTA
1 AAGTTCGTCTCTCAAATAAGACAAACATTGATTCTAGTAATA-ATCTCCATTCATTTTATGATTA
* * * * * * *** *
23346 CGCACTATAAATACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTGGTTGGAAATC
65 GGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAGAAAGC
* * *
23411 TTTACTTCGCCCTATTTTCCTTAAAATCA
130 TTTTCTTTGCCCCATTTT--TTAAAATCA
* * * * * * *
23440 AAGTACATC-CCCTAAATAAGACAAGCATTGATTCTCA-TAACACTCTCCATTC-TTTTCAAGAT
1 AAGTTCGTCTCTC-AAATAAGACAAACATTGATTCT-AGTAATAATCTCCATTCATTTT-ATGAT
* * * * * * *
23502 TGGGAACCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGA
63 TAGGCACCATAAACACATTCTCC-TCATTAGGATA-AATGATATTGATGATTTGCTTTTGCAAG-
* * *
23565 AAAGGTTTTCTGT-CCACCATTTTTATAGAATCA
125 AAAGCTTTTCTTTGCC-CCATTTTT-TAAAATCA
23598 AA
1 AA
23600 AGACAAACAT
Statistics
Matches: 1132, Mismatches: 353, Indels: 200
0.67 0.21 0.12
Matches are distributed among these distances:
154 6 0.01
155 3 0.00
156 10 0.01
157 131 0.12
158 523 0.46
159 332 0.29
160 113 0.10
161 11 0.01
163 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (156 bp):
AAGTTCGTCTCTCAAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTATGATTAG
GCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGCAAGAAAGCT
TTTCTTTGCCCCATTTTTTAAAATCA
Found at i:23354 original size:477 final size:474
Alignment explanation
Indices: 21621--29004 Score: 5080
Period size: 477 Copynumber: 15.6 Consensus size: 474
21611 CTCCGTTCTT
* * * * * *
21621 TTCATTAGGATAC-TAGAAATCGATGCTTTAGTGTTGTAAGAAAAGGTTTTCTGTCCACTATTTT
1 TTCATTAGGATACAT-GACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTT
* * *
21685 TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATAATAGTCATACTAATCCCCATT
65 TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG---AATACTCAAACTAATCCCCATT
* * * * * * ** *
21750 CTTTTCAGGATTACGCTCTATAAACATAGTATTCTCATAAAGATACACAATATTGACACTTTGGT
127 CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGT
** ** * * * *
21815 CACACAAGAAAGGCTTTCTTCACTCCAATTTTTGTAAAGTATAAGTTCGTGCCTCAAATGAGACA
192 TTCGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* *
21880 AACATGGATTCTAGGAATGAT-TTCATTCATTATATGATTAGGCACTATAAACATATTCTCCTCA
257 AACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCA
* *
21944 TTAGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCATTGCCCTATTTTCCTTA
322 TTAGGATAAATGATATTGATGATTTTCTTTTGC-AGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
22009 AAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTACCAATCTCCATTCTTTTCGA
386 AAATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAA
22074 TATTGGGAACCAAAAACACATTCCC
450 TATTGGGAACCAAAAACACATTCCC
*
22099 TTTATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* * * *
22164 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCATACTAATCCCCATTCATT
66 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTT
* * * *
22229 TCAAGATTAGGCACCATAAGCATAATCTTCTCATAAGGATACATGATATTAATGCTTTGGTTTCG
131 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCG
* * * * *
22294 CAAGAAAGGATTTCTTCCTC-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGATAAAC
196 TAAGAAAGGCTTTCTTCC-CACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * *
22358 ATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCTCTATAAACACATTCTCCTCATTA
260 ATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTA
* *
22423 GGATAAATGATATTGATGATTTTCTTTTACTTA-GAAATCTTTT-TTTGCCCCATTTTCCTTAAA
325 GGATAAATGATATTGATGATTTTCTTTTGC--AGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * *
22486 ATCAAAGTTTATCCTTTAAATGAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCAATA
388 ATCAAAGTTCATCC-TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATA
** * *
22551 TCAGGAACAAAAAACACATTCCG
452 TTGGGAACCAAAAACACATTCCC
* * ** ** ** * *
22574 TTTATTAGGATACATGAAATTGATGCTTTGGTGTCACAA-AAAA---TGCCCAT-AAACATTGGT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATT--T
* * * * * * * *
22634 GTCACA-ACTGTTAAAGTTTGTCTCTTAAATAAGACAAACATGTATACCCATACTAATCCCCATT
64 TTTATAGA--ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATT
* * *
22698 CATTTCAAGATTTAGGCACCATAAACATAGTGTTCTCATAAGGATACATGATATTGACACTTTGG
127 CTTTTCAAGA-TTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGG
* * * * * * ** *
22763 TTTCGTAAGAAATGATTT-TTCCCACCAAATTTGGTAAATTCTAAATTCATATCTCAAATAAGAC
191 TTTCGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * * * * *
22827 AAACAAGGATTCTAGCAATGATCCTCGTTCATTTTATGATTAGGCACTATAAACAAATTCTCCAC
256 AAACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTC
* *
22892 ATTAGGATAAATGATATTGATGATTTTCTTTTACAGGAAAATCTTTTCTTTGCCCTATTTTCCAT
321 ATTAGGATAAATGATATTGATGATTTTCTTTTGCAGG-AAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
22957 AAAATCAAAGTTCATCTCTTAAATCAGGCAAGCTTTGATTCTTGTAATAGTCTCCATTCTTTTCA
385 AAAATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA
*
23022 ATATGGGGAACCAAAAACACATTCCC
449 ATATTGGGAACCAAAAACACATTCCC
* *
23048 TTCATTAGGATACATGACATTTATGCTTTGGGGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCA-TTTT
* * *
23113 TTATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACGTGAATACCCAAACTAATCCCCATT-TG
65 TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCT-
* ** * * *
23177 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCGTAAGGATACACAATATTAACGCTTTAGCTT
129 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTT
* * * * *
23242 CGTAAGAAAGCCTTTCTTCCCACCAAATTTTGTAAATTCTATGTTCGTGGCTCAAATGAGACTAA
194 CGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * * * *
23307 CATGGATTCCAGGAAAGATCTTCTTTCATTTTATGATTACGCACTATAAATACATTTTCCTCATT
259 CATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATT
* ** * *
23372 AGGATAAATGATATTGATGATTTTCTTTGGTTGGAAATCTTTACTTCGCCCTATTTTCCTTAAAA
324 AGGATAAATGATATTGATGATTTTCTTTTGCAGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * * *
23437 TCAAAGTACATCCCCTAAATAAGACAAGCATTGATTCTCATAACACTCTCCATTCTTTTCAAGAT
389 TCAAAGTTCAT-CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATAT
23502 TGGGAACCAAAAACACATTCCC
453 TGGGAACCAAAAACACATTCCC
* *
23524 TTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTGTCCACCA-TTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* *
23588 TATAG-----AA-------TC---AA-AAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
66 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTT
* * * *
23637 TTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-CATATTGACACTTTGGCTTT-
131 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGG-TTTC
*** * *
23700 GTAAGAAA-GCTTTTCTTTTTACC-AATTTCTGTAAAGTCTAAGTTCATGCCTCAAATGAGAGAA
195 GTAAGAAAGGC-TTTCTTCCCACCAAATTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * * * * *
23763 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAAAACATTCTCTTTAT
258 ACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAT
*** **
23828 TAGGATAAATGACCCTGATGATTTTCTTTTGCATGGAAATC-ACTCTTTG-CC-----T-CTT-A
323 TAGGATAAATGATATTGATGATTTTCTTTTGCA-GGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* ** * * * * * *
23884 AAT--AAG-ACAAACATGAAT-A--C--CCA-T-A----C-T-A-A-TCCCCATTCGTTTCAAGA
387 AATCAAAGTTCATCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATA
* * * * *
23931 TTAGGCACCATAAACA-AGT-CT
452 TTGGGAACCAAAAACACATTCCC
* * * * ** * * * **
23952 TCTCATTAGGATACACGATATTGACGCTTTGGT-TTCTCAAG-AAAGCCTTTCATCCCATCAAAT
1 T-TCATTAGGATACATGACATTGATGCTTTGGTGTT-GCAAGAAAAGGTTTTCTTTCCACCATTT
* * * * * * * * **
24015 TTTGTA-AAGTCTAAA-TTCGTGTCTCAAATCAGACAAACATGGATTCT-AGGAA-TGATCTTCA
64 TTTATAGAA-TC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA--AACTAATCCCCA
* * * * * ** * * * * * *
24076 TTCACTTT-AAGATTAGTCACTATAAACACATTCACCTGATTAGGATAAATGATACTGATGATTT
125 TTC-TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACG-CTT
** * * * ** ** * * **
24140 TCTTTTC-CATGGAA--CTCTT-TT-CCTTC-AA-TAGGATAAA-T-GACA-TT-GATGCTTTGG
188 TGGTTTCGTAAGAAAGGCT-TTCTTCCCACCAAATTTTG-TAAAGTCTA-AGTTCG-TGC-CTCA
* ** ** * * * * ** * * * * * *
24194 TATTTGTTAGACAAGGTTTTCTTTCA-CAATTTTTTATAGAATCAAAGTTTGTCTTTTAAATAAG
248 AATGAGACAAACATGG-ATTC--T-AGGAATGATCT-T-CATTC--A---T-T-TTAT-GATTAG
* * * * * * * * **
24258 ACAAAC-ATGAATACCCATGCTAATCCCCATTCATTTCAAGAT-TAGGCACCA-T-AAGCATAGT
299 GC--ACTAT-AA-A--CA--C-ATTCTCC--TCA-TT-AGGATAAATG-A-TATTGATG-ATTTT
* * ** ** * * * *
24319 CTTCTTGTAAGGATACA-CGATATT-GATGCTTTAGTTTTGC--AAGA--AAGGCTTTCTTCCCC
348 CTT-TTG-CAGGA-A-ATC--TTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAG--TTCAT--CC
** * *** * * * * * * **** * * * *
24378 CCAATTTTTGTAA--AGTCTAAGT-TCGT----GCCTCAAATGAGATAAACATT--GATTCTAGT
402 TTAAATAAGGCAAGCA-T-TGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGA-ACCA--
* * **
24434 AATGATCTTCATTCATT
462 AA--AAC-ACATTC-CC
* ** * * * * * * *
24451 TTGCGATTAGGCACTATAAACACATT-CTTCTCATTGG-GAT-AAATGATATTTATGTTTCTTTT
1 TT-C-ATTAGG-A-TA-CATGACATTGATGCT--TTGGTGTTGCAA-GA-A---AAGGTT-TTCT
* * * ** * * * * *
24513 TTGCATTATTTGCCTTATTTTTCATAAAATCAAAGTTCATCCCTTAAAGT-AGGCAAGCTTTGAC
53 TT-C--CA----CC--ATTTTTTATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAAC-ATGAA
* * * * *
24577 T-CTCATAAC-AGA-CTCCATTCTTTCCAATATT-GGGAGCCA-AAA-ATACT-TTCCCTTCA-A
107 TACTCA-AACTA-ATCCCCATTCTTTTCAAGATTAGGCA-CCATAAACATAGTCTT--C-TCATA
* * * * * * * *
24634 TAGGATAAATGACATTGATGCTTTGGTTTTGTGAGAAAAGGTTTTCTTTCCA-C-AATTTTTTAT
166 -AGGATACATGATATTGACGCTTTGGTTTCGTAAG-AAAGGCTTTCTTCCCACCAAATTTTGTA-
* * * * * * * * * * * **
24697 AGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATGCCCA-TACTAATCCCCATTCATTT
228 A-AGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGAT-TCTAGGAATGATCTTCATTCATTT
* * * * * * * * * * * * **
24760 CAAGATTAGGCACCATAAGCATAGTCTTCTCGTAAGGATACATGATATTGATGCTCTGGTTTTGC
290 TATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * * * ** * **
24825 AAGAAAGGC-ATTC-TTCCCCTCAATTTT--TGTGAAGTCTAAGTTTGTACCTCAAA-AGAGATA
355 AGGAAA-TCTTTTCTTTGCCCT--ATTTTCCT-TAAAATCAAAGTTCAT-CCTTAAATA-AGGCA
* * * ** * * * * * *
24885 AACATTGATTCTAGTAA-TGATCTTTATTCATTTT--GTGATTAGGCACTATAAACACATTCTC
414 AGCATTGATTCTCGTAACAG-TCTCCATTC-TTTTCAAT-ATTGGGAACCAAAAACACATTCCC
* * * ** * * ** *
24946 TTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTAG-AAATCTTTTCCTTGCC-CCATTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGC-AAGAAAAGGTTTT-CTTTCCACCATTT
* * * * * * *
25009 TCCTTA-A-AATCAAAGTTTATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAA-TAGTCTCCA
64 T--TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTCA-AACTAATCCCCA
* ** * * * * * * * * *
25070 TTCTTTTCAATATGGGGGACCAAAAACACA-T-TTCGTTCATTAGGGTATATGACATTGATGTTT
125 TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC--TCATAAGGATACATGATATTGACGCTT
* * ** * * * * *
25133 TGGTGTT-GTAAGAAAAGGTTTTCTTTCCACCATTTTTTATAAAATCAAAGTTTGT-CTCTTAAA
188 TGGT-TTCGTAAG-AAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGC-CTCAAA
* * * * * * * ** * * * * * *
25196 TAAGACAAACATGAATGCCCA-TACTAATCCCCATTCATTTCAAGATTAGGCACCATAAGCATAG
250 TGAGACAAACATGGAT-TCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACAT
* * * * * * * * * *
25260 TCTTCTCGTAAGGATACATGATATTGATGCTTTTGTTTTG-TGAGAAAGGC-ATT-TTTCCCCTC
314 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAG-GAAA-TCTTTTCTTTGCCCT-
* * * * * * * * *
25322 AATTTT--TGTAAAGTCTAAGTTTATGCCTCAAATGACATTG-ATGCTTTGGTGT-T-G-CA-AG
376 -ATTTTCCT-TAAAATCAAAGTTCAT-CCTTAAAT-A-A-GGCAAGCATTGAT-TCTCGTAACAG
***** ** *
25380 AAAAGATTCCCTT-AA-A-T--------AAGACACATTCCC
434 TCTCCATTCTTTTCAATATTGGGAACCAAAAACACATTCCC
* * **
25410 TTCATTAGGATACATGATATTGATGCTTTGGGTGTTGCAAGAAAAGATTTTCTTTCCATAATTTT
1 TTCATTAGGATACATGACATTGATGCTTT-GGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTT
* * * * * **
25475 TTGTAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACCCATACTAATCCTCATTCAG
65 TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTT
* * * *
25540 TTCAAGATTTAGGCACCATAAACATAGTTTTCTCATAACGAAACATGATATTGACACTTTGGTTT
130 TTCAAGA-TTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTT
* * * * * * **
25605 CGTAAGAAATGATTTCTTCCCTCCAAATTTTGTAAAGTCTAAGTTTGTGACTCAAATGAGGCTGA
194 CGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * * * * *
25670 GATGGATTCTAGGAAAGATCTTCTTTCATTTTATGAGTACGCACTATAAACATAGTCTCCTCATT
259 CATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATT
* * *
25735 AGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTACTTCGCCCTATTTTCCTTAAA
324 AGGATAAATGATATTGATGATTTTCTTTTGC-AGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * *
25800 ATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCACATAACACTCTCCATTCTTTTCAAGA
388 ATCAAAGTTCAT-CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATA
25865 TTGGGAACCAAAAACACATTCCC
452 TTGGGAACCAAAAACACATTCCC
* * * **
25888 TTCAATAAGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTGCCCACCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* *
25953 TATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATAA-TAATCCCCATTCTT
66 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA-AACTAATCCCCATTCTT
* * * * * *
26017 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGATGCTTTGGCTTC
130 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTC
* * *
26082 ATAAGAAA-GCTTTTCTTCCTACC-AA----GT----TC---G-T-G-G-CTCAAATGAGACTAA
195 GTAAGAAAGGC-TTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * * *
26130 CATGGATTCTAGGAATGATCCTCATTTATTTTATGATTAGGCACTATAAACAAATTCTGCACATT
259 CATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATT
* *
26195 AGGATAAATGATATTGATGATTTTCTTTTACAGGGAAATCTTTTCTTTGCCCTATTTTCCATAAA
324 AGGATAAATGATATTGATGATTTTCTTTTGCA-GGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
26260 ATCAAAGTTCATCTCTTAAATCAGGCAAGCTTTGATTCTCGTAATAGTGTCCATTGTTTTCAATA
388 ATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATA
*
26325 TGGGGAACCAAAAACACATTCCC
452 TTGGGAACCAAAAACACATTCCC
* * *
26348 TTCATTAGGATACATGACATTTATGCTTCGGGGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCA-TTTT
* * *
26413 TTATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACCTGAATACCCAAACTAATCCCCATT-TG
65 TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCT-
*
26477 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTT
129 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTT
* * * *
26542 CGTAAGAAA-GCTTTTCTTCCTACC-AATTTCTGTGAAGTCTAAGTTCGTGCCTCAAAAGAGCCA
194 CGTAAGAAAGGC-TTTCTTCCCACCAAATTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
26605 AACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAACACATTCTCCTTA
257 AACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCA
* * * * *
26670 TTAGGGTAAATGACACTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTA
322 TTAGGATAAATGATATTGATGATTTTCTTTTGCA-GGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
26735 AAATCAAAGTTTATCTGTTAAATAAGGCAAGCACTGATTCTCGTACCAGTCTCTATTCTTTTTCA
386 AAATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC-TTTTCA
* *
26800 ATATTGGGAACTAAAAACATATTCCC
449 ATATTGGGAACCAAAAACACATTCCC
* * ** * * * *
26826 TTCACTAGGATACATGACATTGATGGTTTGGTGTCACAAGAAAAGCTTTTCTTTCAATCGTTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* * * * * *
26891 GATAGAATCAAAGTTTTTTCTCTTAAACAAGGCAAACATGAATACCCAAACTAATCCCCATTCGT
66 TATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTT
* ** * *
26956 TTCAAGATTTGGCATTACAAACATAGTCTTCTCATTAA-GATACATGATATTGAAGCTTTGGTTT
130 TTCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACATGATATTGACGCTTTGGTTT
** * * * * * *
27020 CGCGAGAAACGCTTTTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATGCCTCAAATTAGACAAA
194 CGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * * * * *
27085 CATAGATTCTAGAAAAGATTTTCATTCATTCTATGATTAGGGACTCTAAACACATTCTCCTTTCT
259 CATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCC--TC-
* * * *
27150 GTGGCTAGGGATTCTAAATGATACTGATGAGTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTAT
321 AT---TA-GGA---TAAATGATATTGATGATTTTCTTTTGC-AGGAAATCTTTTCTTTGCCCTAT
* * * * *
27215 TTTCCTTAAAATCCAAGTTCATCTCTTAAATAAGTCAAGCATTGATTCTTGTACCAGTCTCTATT
378 TTTCCTTAAAATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
* *
27280 CTTTTCAATATCGAGAACCAAAAACACATTCCC
442 CTTTTCAATATTGGGAACCAAAAACACATTCCC
* * * * *
27313 CTCATTAGGATACAAGACATTGAAGC-TTGATTGTTGCAGGAAAAGGTTTT-TTGTCCACCATTT
1 TTCATTAGGATACATGACATTGATGCTTTG-GTGTTGCAAGAAAAGGTTTTCTT-TCCACCATTT
* * *
27376 TTTATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATGAATAATAGTCATACTAATCCCCAT
64 TTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG---AATACTCAAACTAATCCCCAT
* * * * * *
27441 TCTTTTCAGGATTAGGCACCATAAACATAGTATTCTGATAGGGTTACATGATATTGATGCTTTGG
126 TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGG
* * * * * *
27506 TTACGCAAGAAAGGCTCTCTTCCCACCAATTTTTGTAAAGTCTATA-TTTGCGCCTCAAATGAGA
191 TTTCGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTA-AGTTCGTGCCTCAAATGAGA
* * * * *
27570 CAAACAT-G----T---AATGATCTTC-TCTAATTTTGTCATTAAGCACTATAAATACATTCTCC
255 CAAACATGGATTCTAGGAATGATCTTCAT-TCATTTTATGATTAGGCACTATAAACACATTCTCC
* * ** * *
27626 TTATTAGGATAAATGATACTGACAATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCC
319 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-GGAAATCTTTTCTTTGCCCTATTTTCC
* * * *
27691 TTAAAATCAAAGTTTATCACTTAAATAAGGCAAGTATTGAGTCTCGTACCAGTCTCCATTCTTTT
383 TTAAAATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* *
27756 CAAGATTGGGAACCAAAAACAAATTCCC
447 CAATATTGGGAACCAAAAACACATTCCC
* * * * * *
27784 TTCATTAGGATACAAGACATTGAAGCTTTAGTGTTGCAGGAAAAGCTTTTCTGTCCACCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* * * * * *
27849 TATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACATGAATAGTCACACTATTCCCTATTCTTT
66 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTT
* * * *
27914 TCAGGATTAGGCACCATAAAAATAGTCTTCTCATAAGGATACATGATATTCACGCTTTGGTTACG
131 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCG
* * * * * *
27979 CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAACGTCTAAGCTCGTGTCTCAAATGAGATAAA-A
196 TAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * * * * * * *
28043 TGGATTCCAAGTATGATCTTCAGTCATTTTATAATTAGGTACAATAAACACATTCTCTTCATTAG
261 TGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAG
* * * *
28108 GATAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCATAAAAT
326 GATAAATGATATTGATGATTTTCTTTTGCA-GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * *
28173 AAAAGTTAATCCTTTAAATTAGGCAAGCTTTGATTCTCATTACAGTCTCCATTCTTTTCAATATG
390 CAAAGTTCATCC-TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATT
28238 GGGAACCAAAAACACATTCCC
454 GGGAACCAAAAACACATTCCC
* *
28259 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCGTTCCACCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* * * * * * *
28324 TATAGAATCAAAGTTTTTCTCTCAAATAAGACAAACATGAATGCCCATACAAATCCCCATTCGTT
66 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTT
* * * *
28389 TCAAGATTAGGCACCATAAGCATAGTCTTCTCA-AATGAACAAACATAATATTGACGCTTTGGTT
131 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAA-G--GATACATGATATTGACGCTTTGGTT
* * * * * * **
28453 TTGCAAGAAAGGCTTTCTTCCTATCAATTTTTGTAAAGTCTAAGTCCGTTTCTCAAATGA-ACAA
193 TCGTAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * * * * * *
28517 ATATGGATTCTAGGAACGATCATCATTCATTTCATAATTAGGCACTATAAAAACATTCTCTTCAT
258 ACATGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAT
* **
28582 TAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTAACCTTAA
323 TAGGATAAATGATATTGATGATTTTCTTTTGCA-GGAAATCTTTTCTTTGCCCTATTTTCCTTAA
*
28647 AATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTACCAGTCTCCATTCTTTTCAAT
387 AATCAAAGTTCAT-CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAT
* *
28712 ATTGGGAATCAAACACACATTCCC
451 ATTGGGAACCAAAAACACATTCCC
* * * * *
28736 TTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCAATCATTTTT
1 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
* * * *
28801 GATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAAACTAATCCCCTTTCGTT
66 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTT
* * * * * **
28866 TCAAGTTTTGGCACTACAAACATAGTCTTCTCATTAA-GATACATGATACTGGTGCTTTGGTTTC
131 TCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACATGATATTGACGCTTTGGTTTC
* * * * * *
28930 AG-AAGAAATGCTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGGCAA
195 -GTAAGAAAGGC-TTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* *
28994 GCATTGATTCT
258 ACATGGATTCT
29005 TGTTACAGTC
Statistics
Matches: 5487, Mismatches: 1072, Indels: 695
0.76 0.15 0.10
Matches are distributed among these distances:
428 17 0.00
429 40 0.01
430 29 0.01
431 1 0.00
432 1 0.00
433 1 0.00
434 1 0.00
435 2 0.00
438 1 0.00
439 1 0.00
440 8 0.00
441 15 0.00
442 9 0.00
443 3 0.00
444 13 0.00
445 64 0.01
446 23 0.00
447 6 0.00
448 1 0.00
449 4 0.00
450 3 0.00
451 2 0.00
452 1 0.00
453 3 0.00
454 4 0.00
455 2 0.00
456 12 0.00
457 143 0.03
458 81 0.01
459 5 0.00
460 255 0.05
461 145 0.03
462 7 0.00
463 4 0.00
464 61 0.01
465 191 0.03
466 79 0.01
467 29 0.01
468 144 0.03
469 4 0.00
470 10 0.00
471 230 0.04
472 10 0.00
473 198 0.04
474 215 0.04
475 633 0.12
476 696 0.13
477 895 0.16
478 439 0.08
479 18 0.00
480 5 0.00
481 36 0.01
482 3 0.00
484 3 0.00
485 6 0.00
486 32 0.01
487 85 0.02
488 109 0.02
489 132 0.02
490 9 0.00
491 7 0.00
492 13 0.00
493 8 0.00
494 7 0.00
495 21 0.00
496 15 0.00
497 9 0.00
498 7 0.00
499 14 0.00
500 18 0.00
501 7 0.00
502 7 0.00
503 10 0.00
504 5 0.00
505 1 0.00
506 2 0.00
508 3 0.00
509 7 0.00
510 3 0.00
511 5 0.00
512 2 0.00
513 1 0.00
514 1 0.00
516 4 0.00
517 18 0.00
518 61 0.01
519 13 0.00
520 2 0.00
521 12 0.00
522 4 0.00
523 2 0.00
524 14 0.00
525 4 0.00
526 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCATTTTT
TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTT
TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCG
TAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
TGGATTCTAGGAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAG
GATAAATGATATTGATGATTTTCTTTTGCAGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGG
GAACCAAAAACACATTCCC
Found at i:24849 original size:159 final size:158
Alignment explanation
Indices: 24635--29276 Score: 730
Period size: 159 Copynumber: 29.4 Consensus size: 158
24625 TCCCTTCAAT
* ** * * *
24635 AGGATAAATGACATTGATGCTTTGGTTTTGTGAGAAAAGGTTTTCTT-TCCACAATTTTTTATAG
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTCTTCCCCTCAATTTTTTATAG
*
24699 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCATACTAATCCCCATTCATTTCAAG
65 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAAG
* *
24764 ATTAGGCACCATAAGCATAGTCTTCTCGTA
129 ATTAGGCACCATAAACATAGTCTTCTCATA
* * * *
24794 AGGATACATGATATTGATGCTCTGGTTTTGCAAGAAAGGCATTCTTCCCCTCAA-TTTTTGT-GA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCTCAATTTTTTATAGA
* * * * * * * ** *
24857 AGTCTAAGTTTGTAC-CTCAAA-AGAGATAAACATTG-ATTCTAGTAATGATCTTTATTCATTTT
66 A-TCAAAGTTTGT-CTCTTAAATA-AGACAAACA-TGAATCCCA-TACTAATCTCCATTCATTTC
** * * * *
24919 GTGATTAGGCACTATAAACACATTC-TCTTCATT
126 AAGATTAGGCACCATAAACATAGTCTTC-TCATA
* ** * * *
24952 AGGATAAATGATATTGATGATTTTCTTTTGCTTAGAAA-TCTTTTCCTTGCCC-C-ATTTTCCTT
1 AGGATAAATGATATTGATGCTTTGGTTTTGC-AAGAAAGGC-TTT-CTTCCCCTCAATTTT--TT
* * * * * * * * *
25014 A-A-AATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTT
61 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATCCCATACTAATCTCCATTCATTT
* ** * * * *
25077 CAATATGGGGGACCAAAAACACA-T-TTCGTTCATT
125 CAAGATTAGGCACCATAAACATAGTCTTC--TCATA
* * * * * * * *
25111 AGGGTATATGACATTGATGTTTTGGTGTTGTAAGAAAAGGTTTTCTTTCCAC-C-ATTTTTTATA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTC-TTCCCCTCAATTTTTTATA
* *
25174 AAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCCCATACTAATCCCCATTCATTTCAA
64 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAA
* *
25239 GATTAGGCACCATAAGCATAGTCTTCTCGTA
128 GATTAGGCACCATAAACATAGTCTTCTCATA
* * **
25270 AGGATACATGATATTGATGCTTTTGTTTTGTGAGAAAGGCATTT-TTCCCCTCAATTTTTGTA-A
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCCTCAATTTTT-TATA
* * * * * * * ** * * ****
25333 -AGTCTAAGTTTATGC-CTCAAAT--GAC--A-TTG-AT-GC-T-TTGGTGT---TGCAAGAAAA
64 GAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATCCCATACTAATCTCCATTCATTTCAA
** * * * * *
25384 GATT-CCCTTA-AATAAGACACATTC-CCTTCATT
128 GATTAGGC--ACCATAA-ACATAGTCTTC-TCATA
* * ** * * *
25416 AGGATACATGATATTGATGCTTTGGGTGTTGCAAGAAAAGATTTTCTTTCCAT-AATTTTTTGTA
1 AGGATAAATGATATTGATGCTTT-GGTTTTGCAAG-AAAGGCTTTCTTCCCCTCAATTTTTTATA
* *
25480 GAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACCCATACTAATC-CTCATTCAGTTCA
64 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTC-CATTCATTTCA
*
25544 AGATTTAGGCACCATAAACATAGTTTTCTCATA
127 AGA-TTAGGCACCATAAACATAGTCTTCTCATA
* ** * * * * *
25577 ACGA-AACATGATATTGACACTTTGGTTTCGTAAGAAATGATTTCTT-CCCTCCAAATTTTGTA-
1 AGGATAA-ATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCT-C-AATTTTTTAT
* * ** * * * ** * * * * * * * * *
25639 A-AGTCTAAGTTTGTGACTCAAATGAGGCTGAGATGGATTCTAGGA-AAGATCTTCTTTCATTTT
63 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATCCCA-TACTA-ATCTCCATTCATTTC
* * * * * *
25702 ATGAGTACGCACTATAAACATAGTCTCCTCATT
126 AAGATTAGGCACCATAAACATAGTCTTCTCATA
* ** ** *
25735 AGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAA-TCTTTACTTCGCCCT--ATTTTCCTT
1 AGGATAAATGATATTGATGCTTTGGTTTTGC-AAGAAAGGCTTT-CTTC-CCCTCAATTTT--TT
** * * * * * * *
25797 A-A-AATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCACATAAC-ACTCTCCATTCTTT
61 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATCCCAT-ACTAATCTCCATTCATT
* * * * * *
25859 TCAAGATTGGGAACCAAAAACACATTCCCTTC-AATA
124 TCAAGATTAGGCACCATAAACATAGT--CTTCTCATA
* * * *
25895 A-GATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTGCCCAC-C-ATTTTTTAT
1 AGGATA-AATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTCTTCCC-CTCAATTTTTTAT
* ** * * * *
25956 AGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATAATAATCCCCATTCTTTTTA
63 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCA
*
26021 GGATTAGGCACCATAAACATAGTCTTCTCATA
127 AGATTAGGCACCATAAACATAGTCTTCTCATA
* * * * *** **
26053 AGGATACACGAAATTGATGCTTTGGCTTCATAAGAAA-GCTTTTCTT--CCT--A----CCA-AG
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCCTCAATTTTTTATAG
* * * * * * * * * * * * *
26108 -TTC---G--TGGCTC--AAATGAGACTAACATGGATTCTAGGAATGATC-CTCATTTATTTTAT
65 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATCCCA-TACTAATCTC-CATTCATTTCAA
* * * * * *
26164 GATTAGGCACTATAAACAAATTCTGCACATT
128 GATTAGGCACCATAAACATAGTCTTCTCATA
* ** * * * * **
26195 AGGATAAATGATATTGATGATTTTCTTTTACAGGGAAA-TCTTTTCTTTGCCCT--ATTTTCCAT
1 AGGATAAATGATATTGATGCTTTGGTTTTGCA-AGAAAGGC-TTTC-TTCCCCTCAATTTTTTAT
* ** * * * * * * * * * * **
26257 AAAATCAAAGTTCATCTCTTAAATCAGGCAAGCTTTGATTCTCGTAATAGTGTCCATTGTTTTCA
63 AGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATCCCATACTAATCTCCATTCATTTCA
* ** * * * * * *
26322 ATATGGGGAACCAAAAACACATTC-CCTTCATT
127 AGATTAGGCACCATAAACATAGTCTTC-TCATA
* * * * ** * * *
26354 AGGATACATGACATTTATGCTTCGGGGTTGCAAGAAAAGGTTTTCTTTCCAC-CATTTTTTTATA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTC-TTCCCCTCAATTTTTTATA
* * * * **
26418 GAATCAAAGTTTGTCTTTTAAATAAGACAAACCTGAATACCCAAACTAATCCCCATTTGTTTCAA
64 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAA
26483 GATTAGGCACCATAAACATAGTCTTCTCATA
128 GATTAGGCACCATAAACATAGTCTTCTCATA
* * * * * * * *
26514 AGGATACATGATATTGACGCTTTGGCTTCGTAAGAAA-GCTTTTCTTCCTAC-CAA-TTTCTGT-
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCC-CCTCAATTTTTTATA
* * * * * * * * * *
26575 GAAGTCTAAGTTCGTGC-CTCAAA-AGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTT
64 GAA-TCAAAGTTTGT-CTCTTAAATA-AGACAAACATGAATCCCA-TACTAATCTCCATTCATTT
*** * * * * * * *
26638 TGTGATTTGGCACTATAAACACATTCTCCTTATT
125 CAAGATTAGGCACCATAAACATAGTCTTCTCATA
* * * * * ** * ** *
26672 AGGGTAAATGACACTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT--ATTTTCCTTA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTC-TTCCCCTCAATTTT--TTA
* * * * * * * * * * *
26735 -A-AATCAAAGTTTATCTGTTAAATAAGGCAAGCACTGATTCTCGTACCAGTCTCTATTCTTTTT
62 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATCCCATACTAATCTCCATTC-ATTT
* * * * * * *
26798 CAATATTGGGAACTAAAAACATATTC-CCTTCACT-
125 CAAGATTAGGCACCATAAACATAGTCTTC-TCA-TA
* * * * ** * * ** * *
26832 AGGATACATGACATTGATGGTTTGGTGTCACAAGAAAAGCTTTTCTTTCAATC-GTTTTTGATAG
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCCTCAATTTTTTATAG
* * * * * *
26896 AATCAAAGTTTTTTCTCTTAAACAAGGCAAACATGAATACCCAAACTAATCCCCATTCGTTTCAA
65 AATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAA
* ** *
26961 GATTTGGCATTACAAACATAGTCTTCTCATTA
128 GATTAGGCACCATAAACATAGTCTTCTCA-TA
* * * * * * *
26993 A-GATACATGATATTGAAGCTTTGGTTTCGCGAGAAACGCTTTTTTCCCAC-CAA-TTTTTGT-G
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-CTCAATTTTTTATAG
* * * * * * ** * *
27054 AAGTCTAAGTTCATG-C-CTCAAATTAGACAAACAT-AGATTCTAGAAAAGATTTTCATTCA-TT
65 AA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGA-ATCCCATACTA-ATCTCCATTCATTT
* * **
27115 CTATGATTAGGGACTC-TAAACACATTCTCCTTTCTGTGGC-TA
125 C-AAGATTAGGCAC-CAT-AA-ACATAGT-C-TTC--T--CATA
* * * * ** * *
27157 GGGATTCTAAATGATACTGATGAGTTT-CTTTTGCTTGGAAA-TCTTTTCTTTGCCCT--ATTTT
1 AGGA---TAAATGATATTGATG-CTTTGGTTTTGC-AAGAAAGGC-TTTC-TTCCCCTCAATTTT
* ** * * * *** * * *
27218 CCTTA-A-AATCCAAGTTCATCTCTTAAATAAGTCAAGCATTGATTCTTGTACCAGTCTCTATTC
59 --TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATCCCATACTAATCTCCATTC
* * * * * * * ** *
27281 TTTTCAATA-TCGAGAACCAAAAACACATTCCCCTCATT
121 ATTTCAAGATTAG-GCACCATAAACATAGTCTTCTCATA
* * * * * * *
27319 AGGATACAA-GACATTGAAGC-TTGATTGTTGCAGGAAAAGGTTTTTTGTCCAC-C-ATTTTTTA
1 AGGATA-AATGATATTGATGCTTTGGTT-TTGCAAG-AAAGGCTTTCT-TCCCCTCAATTTTTTA
* ** * *
27380 TAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATGAATAATAGTCATACTAATCCCCATTCTT
62 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG---AAT-CCCATACTAATCTCCATTCAT
* * *
27445 TTCAGGATTAGGCACCATAAACATAGTATTCTGATA
123 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATA
* * * ** *
27481 GGGTTACATGATATTGATGCTTTGGTTACGCAAGAAAGGCTCTCTTCCCAC-CAATTTTTGTA-A
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-CTCAATTTTT-TATA
* * * * * * *
27544 -AGTCTATA-TTTG-CGCCTCAAATGAGACAAACATGTAAT--GAT-CT--TCTCTAATT--TTG
64 GAATC-AAAGTTTGTC-TCTTAAATAAGACAAACATG-AATCCCATACTAATCTC-CATTCATT-
* * * * * * * *
27599 TC---ATTAAGCACTATAAATACATTCTCCTTATT
124 TCAAGATTAGGCACCATAAACATAGTCTTCTCATA
* *** ** * ** *
27631 AGGATAAATGATACTGACAATTTTCTTTTGCATGAAAATCTTTTCTTTACCCT--ATTTTCCTTA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTC-TTCCCCTCAATTTT--TTA
* * * ** * * * * * *
27694 -A-AATCAAAGTTTATCACTTAAATAAGGCAAGTATTGAGTCTCGTACCAGTCTCCATTCTTTTC
62 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATCCCATACTAATCTCCATTCATTTC
* * * * * * *
27757 AAGATTGGGAACCAAAAACAAATTC-CCTTCATT
126 AAGATTAGGCACCATAAACATAGTCTTC-TCATA
* * * * * * *
27790 AGGATACAA-GACATTGAAGCTTTAGTGTTGCAGGAAAAGCTTTTCTGTCCAC-C-ATTTTTTAT
1 AGGATA-AATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCT-TCCCCTCAATTTTTTAT
* * ** * * *
27852 AGAATCAAAGTTTATCTCTTAAAAAAGACAAACATGAATAGTCACACTATTC-CCTATTCTTTTC
63 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCC-ATTCATTTC
* *
27916 AGGATTAGGCACCATAAAAATAGTCTTCTCATA
126 AAGATTAGGCACCATAAACATAGTCTTCTCATA
* * * **
27949 AGGATACATGATATTCACGCTTTGGTTACGCAAGAAAGGCTTTCTTCCCAC-CAATTTTTGTA-A
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-CTCAATTTTT-TATA
* * * * * * * * * * * * *
28012 CG--TCTAAGCTCGTGTCTCAAATGAGATAAA-ATGGATTCCAAGTA-TGATCTTCAGTCATTTT
64 -GAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATCCCA-TACTAATCTCCATTCATTTC
* * * * *
28073 ATA-ATTAGGTACAATAAACACATTC-TCTTCATT
126 A-AGATTAGGCACCATAAACATAGTCTTC-TCATA
* * ** * ** ** ** *
28106 AGGATAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCATAA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCCTCAATTTTTTATAG
* ** * * * * * * * *
28170 AATAAAAGTTAATC-CTTTAAATTAGGCAAGCTTTGATTCTCATTAC-AGTCTCCATTCTTTTCA
65 AATCAAAGTTTGTCTC-TTAAATAAGACAAAC-ATGAATCCCA-TACTAATCTCCATTCATTTCA
* ** * * * * * *
28233 ATATGGGGAACCAAAAACACATTC-CCTTCATT
127 AGATTAGGCACCATAAACATAGTCTTC-TCATA
* * * * * *
28265 AGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCGTTCCAC-C-ATTTTTTATA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTC-TTCCCCTCAATTTTTTATA
* * * * *
28328 GAATCAAAGTTTTTCTCTCAAATAAGACAAACATGAATGCCCATACAAATCCCCATTCGTTTCAA
64 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAA
*
28393 GATTAGGCACCATAAGCATAGTCTTCTCA-A
128 GATTAGGCACCATAAACATAGTCTTCTCATA
* * * * **
28423 ATGAACAAACATAATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTATCAATTTTTGTA
1 A-GGA-TAA-ATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCTCAATTTTT-TA
* * ** * * * * * * * * *
28488 -A-AGTCTAAGTCCGTTTCTCAAATGA-ACAAATATGGATTCTAGGAAC-GATCAT-CATTCATT
62 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATCCCA--TACTAATC-TCCATTCATT
* * * * *
28548 TCATA-ATTAGGCACTATAAAAACATTC-TCTTCATT
124 TCA-AGATTAGGCACCATAAACATAGTCTTC-TCATA
* ** * * * * **
28583 AGGATAAATGATATTGATGATTTTCTTTTACATGGAAA-TCTTTTCTTTGCCCT--ATTAACCTT
1 AGGATAAATGATATTGATGCTTTGGTTTTGCA-AGAAAGGC-TTTC-TTCCCCTCAATT--TTTT
** * * * * * * * * *
28645 A-A-AATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTACCAGTCTCCATTCTTTT
61 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATCCCATACTAATCTCCATTCATTT
* * * * * * * *
28708 CAATATTGGGAATCA-AACACACATTC-CCTTCATT
125 CAAGATTAGGCACCATAA-ACATAGTCTTC-TCATA
* * * * * * * ** *
28742 AGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCAATC-ATTTTTGATAG
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCCTCAATTTTTTATAG
* * * * * *
28806 AATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAAACTAATCCCCTTTCGTTTCAAG
65 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAAG
* * * *
28871 TTTTGGCACTACAAACATAGTCTTCTCATTA
129 ATTAGGCACCATAAACATAGTCTTCTCA-TA
* * * * * *
28902 A-GATACATGATACTGGTGCTTTGGTTTCAG-AAGAAATGCTTTTTTTCCCAC-CAATTTTTGTA
1 AGGATAAATGATATTGATGCTTTGGTTT-TGCAAGAAAGGC-TTTCTTCCC-CTCAATTTTT-TA
* * * * * * *** * *
28964 -A-AGTCTAAGTTCATG-C-CTCAAATAAGGCAAGCATTGATTCTTGTTAC-AGTCTCCATTCTT
62 TAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-TGAATC-CCATACTAATCTCCATTCAT
* * * * * * *
29024 TTCAATATTGGGAACCAAAAACACATTCCTT-TCATT
123 TTCAAGATTAGGCACCATAAACATAGT-CTTCTCATA
* * * * *
29060 AGGATATATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCAC-C-A-TTTTTATA
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTC-TTCCCCTCAATTTTTTATA
* ** * * *
29122 GAATCAAAGTTTGTCTCTAAAATAAGACAAACCCGAATGCCCACACTAATCCCCATTCGTTTCAA
64 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CCCATACTAATCTCCATTCATTTCAA
* * ** *
29187 GATTATGCACCGTAAGGATAGTCTTCTCGTA
128 GATTAGGCACCATAAACATAGTCTTCTCATA
* * * *
29218 AGGATACACGATATTGATGCTTTGGTTTCGCACGAAAGGCTTTCTTCCCAC-CAATTTTT
1 AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-CTCAATTTTT
29277 GTAAAGTCTA
Statistics
Matches: 3114, Mismatches: 1055, Indels: 628
0.65 0.22 0.13
Matches are distributed among these distances:
141 2 0.00
142 78 0.03
143 10 0.00
144 8 0.00
145 14 0.00
146 38 0.01
147 19 0.01
148 26 0.01
149 3 0.00
150 63 0.02
151 29 0.01
152 15 0.00
153 10 0.00
154 7 0.00
155 8 0.00
156 24 0.01
157 183 0.06
158 569 0.18
159 1290 0.41
160 370 0.12
161 161 0.05
162 77 0.02
163 11 0.00
164 3 0.00
165 3 0.00
166 2 0.00
167 4 0.00
168 25 0.01
169 45 0.01
170 14 0.00
171 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
AGGATAAATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCTCAATTTTTTATAGA
ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATCCCATACTAATCTCCATTCATTTCAAGAT
TAGGCACCATAAACATAGTCTTCTCATA
Found at i:29793 original size:475 final size:475
Alignment explanation
Indices: 28970--30023 Score: 1388
Period size: 475 Copynumber: 2.2 Consensus size: 475
28960 TGTAAAGTCT
* * * * *
28970 AAGTTCATGCCTCAAATAAGGCAAGCATTGATTCTTGTTACAGTCTCCATTCTTTTCAATATTGG
1 AAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGG
* * * * *
29035 GAACCAAAAACACATTCCTTTCATTAGGATATATGACATTGATGCTTTGGTGTTGCAAGAAAAGG
66 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGC
* * **
29100 TTTTCTTTCCACCATTTTTATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACCCGAATGCCCA
131 TTTTCTTTCCACCATTTTTATAGAATCAAAGTTTGCCTCTAAAATAAGAAAAACAAGAATGCCCA
* * ** * * *
29165 CACTAATCCCCATTCGTTTCAAGATTATGCACCGTAAGGATAGTCTTCTCGTAAGGATACACGAT
196 CACTAATCCCCATTCGTTTCAAGATTAGGCACCATAAAAATAGTCCTCTCATAAGGATACAAGAT
* ** * *
29230 ATTGATGCTTTGGTTTCGCACGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATG
261 ATTGATGATTTGGAATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * *
29295 CCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTTTAA
326 CCTCAAATGAGACAAACATGGATTCTAGGAATGATCATCATTCATTTTATAATTAGGCACTATAA
* * * * * *
29360 AAACATTCTCCTCATTAGGGTAAATGATACTGATGGTTTTCTTTTGCGTGAAAATCTTTTCTTTG
391 AAACATTCTCCTCATTAGGATAAATGAAACTGATGATTTTCATTTGCATGAAAATCTTTTATTTG
*
29425 CCCTATTTTCCTTAAAATCA
456 CCCTATTTTCCATAAAATCA
* * *
29445 ATGTTCATCTCTTAAATAAGGCAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCACTATTGG
1 AAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGG
* * * * *
29510 GAACCAAAAGCACATTCCCTTCCTTAAGATACATGATATGGATGCTTTGGTGTCGCAAGAAATGC
66 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGC
* *
29575 TTTTCTTTCCCCCCATTTTTGCA-AGAATCAAAGTTTGCCTCTTAAA-AAGAAAAACAAGAATAG
131 TTTTCTTT-CCACCATTTTT--ATAGAATCAAAGTTTGCCTCTAAAATAAGAAAAACAAGAAT-G
* * **
29638 -TCACACTATTCCTGA-T-G-TTCATTAGGATTAGGCACCATAAAAATAGTCCTCTCATAAGGAT
192 CCCACACTAATCCCCATTCGTTTCA--A-GATTAGGCACCATAAAAATAGTCCTCTCATAAGGAT
29699 ACAAGATATTGATGATTTGGCAAT-GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
254 ACAAGATATTGATGATTTGG-AATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
** *
29763 AGTTCATTTCTCAAATGA-ACAAATATGGATTCTAGGAATGATCATCATTCATTTTATAATTAGG
318 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGGAATGATCATCATTCATTTTATAATTAGG
* *
29827 CACTATAAAAACATTCTCTTCATTAGGATAAATGAAATTGATGATTTTCATTTGCATGAAAATCT
383 CACTATAAAAACATTCTCCTCATTAGGATAAATGAAACTGATGATTTTCATTTGCATGAAAATCT
*
29892 TTTATTTGCCCTATTTTTCATAAAATCA
448 TTTATTTGCCCTATTTTCCATAAAATCA
* * *
29920 AAGTTCATCCCTTAAATAAGGCAAGCT-TTGATTCTCGTAACAGACTCCGTTCTTTCCAATATTG
1 AAGTTCATCCCTTAAATAAGGCAAG-TATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTG
* *
29984 GGAGCCAAAAACACATTCCCTTCATTAGGGTACATGACAT
65 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
30024 TTGATGACAA
Statistics
Matches: 499, Mismatches: 71, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
473 4 0.01
474 1 0.00
475 334 0.67
476 136 0.27
477 23 0.05
478 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
AAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGG
GAACCAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGC
TTTTCTTTCCACCATTTTTATAGAATCAAAGTTTGCCTCTAAAATAAGAAAAACAAGAATGCCCA
CACTAATCCCCATTCGTTTCAAGATTAGGCACCATAAAAATAGTCCTCTCATAAGGATACAAGAT
ATTGATGATTTGGAATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
CCTCAAATGAGACAAACATGGATTCTAGGAATGATCATCATTCATTTTATAATTAGGCACTATAA
AAACATTCTCCTCATTAGGATAAATGAAACTGATGATTTTCATTTGCATGAAAATCTTTTATTTG
CCCTATTTTCCATAAAATCA
Found at i:30841 original size:18 final size:18
Alignment explanation
Indices: 30818--30882 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
30808 ATCTTCTTCT
30818 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
30836 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
30857 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
30878 CTCCT
1 CTCCT
30883 ATCTCTACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 2 0.05
20 2 0.05
21 4 0.11
22 2 0.05
23 2 0.05
24 7 0.19
25 3 0.08
ACGTcount: A:0.09, C:0.49, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:30873 original size:42 final size:42
Alignment explanation
Indices: 30821--30939 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
30811 TTCTTCTCTC
*
30821 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
30863 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
30905 CTCCTCCTATCATCCCTTCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
30940 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:30905 original size:18 final size:18
Alignment explanation
Indices: 30836--30906 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
30826 CCTATCATCC
* *
30836 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
30854 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
30876 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
30896 CTCCTGTCTCT
1 CTCCTGTCTCT
30907 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:32742 original size:242 final size:242
Alignment explanation
Indices: 32317--32800 Score: 950
Period size: 242 Copynumber: 2.0 Consensus size: 242
32307 ACCAGCAGGC
32317 CCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATG
1 CCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATG
*
32382 CAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCAT
66 CAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCAT
32447 CTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCA
131 CTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCA
32512 ACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCA
196 ACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCA
*
32559 CCTTTATTACAAAATAACCCAAGTCCTAATTTAATCCATTGGAGCCCATATCTTCCAAATATATG
1 CCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATG
32624 CAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCAT
66 CAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCAT
32689 CTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCA
131 CTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCA
32754 ACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCA
196 ACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCA
32801 ACCCCTCCTT
Statistics
Matches: 240, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 240 1.00
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (242 bp):
CCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATG
CAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCAT
CTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCA
ACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCA
Found at i:35769 original size:42 final size:42
Alignment explanation
Indices: 35723--35841 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
35713 TCTTCTCAAC
* * *
35723 CTCCTTCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
35765 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
35807 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
35842 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:35782 original size:12 final size:11
Alignment explanation
Indices: 35756--35831 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
35746 TCTATTATCT
*
35756 CTCCTGTCTCTC
1 CTCCTATCTC-C
35768 CTCCTATCATCC
1 CTCCTATC-TCC
35780 CTCCTATCT--
1 CTCCTATCTCC
*
35789 CTACTATCT--
1 CTCCTATCTCC
*
35798 CTCCTGTCTCTC
1 CTCCTATCTC-C
35810 CTCCTATCATCC
1 CTCCTATC-TCC
*
35822 CTCCTCTCTC
1 CTCCTATCTC
35832 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:35783 original size:24 final size:24
Alignment explanation
Indices: 35747--35832 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
35737 CCTCCTCTCT
* *
35747 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
35771 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
35792 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
35813 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
35833 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:35807 original size:18 final size:18
Alignment explanation
Indices: 35738--35808 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
35728 TCTGTCATCC
* *
35738 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
35756 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
35778 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
35798 CTCCTGTCTCT
1 CTCCTGTCTCT
35809 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:38110 original size:708 final size:708
Alignment explanation
Indices: 36754--38127 Score: 2748
Period size: 708 Copynumber: 1.9 Consensus size: 708
36744 AACCAAAGCT
36754 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
1 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
36819 AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAAATAAGAAAAT
66 AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAAATAAGAAAAT
36884 GGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCG
131 GGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCG
36949 CCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCA
196 CCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCA
37014 CTCTCACACAAAAATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAA
261 CTCTCACACAAAAATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAA
37079 GAGCTTATATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAA
326 GAGCTTATATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAA
37144 GCCCAACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
391 GCCCAACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
37209 ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTTAATCCATTGGAGCCCATATCTTC
456 ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTTAATCCATTGGAGCCCATATCTTC
37274 CAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGC
521 CAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGC
37339 CAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGA
586 CAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGA
37404 AATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCAA
651 AATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCAA
37462 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
1 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
37527 AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAAATAAGAAAAT
66 AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAAATAAGAAAAT
37592 GGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCG
131 GGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCG
37657 CCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCA
196 CCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCA
37722 CTCTCACACAAAAATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAA
261 CTCTCACACAAAAATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAA
37787 GAGCTTATATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAA
326 GAGCTTATATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAA
37852 GCCCAACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
391 GCCCAACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
37917 ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTTAATCCATTGGAGCCCATATCTTC
456 ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTTAATCCATTGGAGCCCATATCTTC
37982 CAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGC
521 CAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGC
38047 CAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGA
586 CAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGA
38112 AATCCTTCCAACGCCT
651 AATCCTTCCAACGCCT
38128 CCTTGGTTTT
Statistics
Matches: 666, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
708 666 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (708 bp):
CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAAATAAGAAAAT
GGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCG
CCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCA
CTCTCACACAAAAATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAA
GAGCTTATATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAA
GCCCAACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTTAATCCATTGGAGCCCATATCTTC
CAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGC
CAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGA
AATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCAA
Found at i:38264 original size:18 final size:18
Alignment explanation
Indices: 38241--38305 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
38231 ATCTTCTTCT
38241 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
38259 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
38280 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
38301 CTCCT
1 CTCCT
38306 ATCTCTACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 2 0.05
20 2 0.05
21 4 0.11
22 2 0.05
23 2 0.05
24 7 0.19
25 3 0.08
ACGTcount: A:0.09, C:0.49, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:38296 original size:42 final size:42
Alignment explanation
Indices: 38244--38362 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
38234 TTCTTCTCTC
*
38244 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
38286 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
38328 CTCCTCCTATCATCCCTTCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
38363 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:38328 original size:18 final size:18
Alignment explanation
Indices: 38259--38329 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
38249 CCTATCATCC
* *
38259 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
38277 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
38299 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
38319 CTCCTGTCTCT
1 CTCCTGTCTCT
38330 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:42357 original size:476 final size:475
Alignment explanation
Indices: 39970--44957 Score: 6220
Period size: 476 Copynumber: 10.5 Consensus size: 475
39960 CTTGGTTTTC
* * *
39970 ATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCACATTCTTTTCAGGA
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * * * * * * *
40035 TCAGGCACCATAAACGTAGTCTTTTCATTAGGATACAAGGT-TTGTA-ACTTTGGTTTCGCAAGA
66 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTG-ACGCTTTGGTTTCGCAAGA
* ** *
40098 AAGGCTTTCTTACCACCAAATTTTGTAAAGTCTAAGTTAATGCGTCAAATGAGACAAACATGGGT
130 AAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGT
* * *
40163 TCTAGTAAAGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCCCCTCAATAGCGTAA
195 TCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAG-GTAA
*
40228 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTTTATTTTCCTTAAAATCAAAA
259 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
* **
40293 TTCATCCCTTAAATATGACAAGCATCAATTCTCGCAACAGTCTCCATTCTTTTC-A-A----GAA
324 TTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA
*
40352 CCAAGAACATATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
389 CCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
*
40417 TCTTTCCAACATTTTTGATAGA
454 TCTTTCCACCATTTTTGATAGA
* * * * ** *
40439 ATCAATGATTGTCTCCTAAATAAGACAAACAGGAATAGTCATACAAATCCCCATTCACTTCAAGA
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * *
40504 GTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTTGCAAGAA
66 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * * * *
40569 AGGCATTT-TTCCCGCCAATTTTTGTAAAGTTTAAGTTCGTGCCTCAATTGAGACAAACATGGGC
131 AGGC-TTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGT
* * * *
40633 TCTTGTAAGGAT-TTCCACT-CATTTTGTGATCAGGTACTATAAACAAATTCTCCTCATTAGGAA
195 TCTAGTAAGGATCTT-CA-TACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGG-T
* * * * * *
40696 AAAAGATATTAACGATTTT-TTTTGCATGGAAATCTTTTCTTCGCCTTATTTTCCCTAAAATCAT
257 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAA
* * * * ** * *
40760 AGTTTATCCCATAAATAAGACAAGCATCGATTCTCATAGTAGTCTCCAATCTTTTCAAGATTGTG
322 AATTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * * *
40825 AGCCAAGAACAGATTCCCTTCATTGGGATACATGACATTGATGCTTTGGTGTCGCAAGGAAAGCT
387 AACCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCT
*
40890 TTT-TTGTCCATCATTTTTGATAGA
452 TTTCTT-TCCACCATTTTTGATAGA
* *
40914 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGA
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * * * * * * * *
40979 TTAGACAACATAAACTTAGTCTTCTCATAAGGATACATGATATTGTCACTTTGGTTTTGTAAGAA
66 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* ** * * *
41044 AGGCTTTCTT-CTGACCAATTTTTGTAAAGTCTAAGTTAATGCCTCAACTAAGATAAACATGGGT
131 AGGCTTTCTTAC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGT
* *
41108 TCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTTTCCTCATTAGAATAA
195 TCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAG-GTAA
* * *
41173 ATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTG-CTCTATTCTCCTTAAACTCAAA
259 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCCTTAAAATCAAA
** * * * *
41237 ATTCATCCCTT-AATATGACAAGCATCGATTCTTGTAATAGTCCCCATTTTTTTAAAGATTGGGA
323 ATTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGA
** * ** *
41301 ACCAAGAACACATT-TTTATCATTAGGATACATGACAATGGTGCTTTGGTGTTGCGAGAAAAGCT
388 ACCAAGAACACATTCCCT-TCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCT
* *
41365 TTTCTTTCCACCGTTTTTGTTAGA
452 TTTCTTTCCACCATTTTTGATAGA
*
41389 ATCAATGTTTGTCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTCTTT-AGG
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTCAGG
* * * **
41453 ATTAGGCACTATAAACATAGTCTTCTCATAAGGATATACGATATTGATGTTTTGGTTTCATAAGA
65 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGA
* * *** * *
41518 AAGGCTTTTTTATCGTTAATTTTTGTAAAGTCTAAGTTCGTGCCTCGATTGAGAC-AACATGGGT
130 AAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGT
* * * * *
41582 TCTTGTAAGGATCTCCACT-CATTTTGTGATCAAGCACTATAAACAAATTCTCCTCATTAGGCAA
195 TCTAGTAAGGATCTTCA-TACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGG-TA
* *
41646 AATGATA-T--TGATTTTCTTTTGCATGGAAATCCTTTCTTTACCTTATTTTCCTTAAAA-CTAA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATC-AA
* * * * * * *
41707 TATTTATCCCATAAATAAGATAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCCAGATTGGG
322 AATTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * * * * *
41772 AACCAAGAACAGATTTCCTTCCTTAGGATACTTGACATTGATGCTTTGGTGGCACAGGAAATGCT
387 AACCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCT
* *
41837 TTT-TGGTCCACCGTTTTTGATAGA
452 TTTCT-TTCCACCATTTTTGATAGA
* * *
41861 ATCTATGTTTTTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCACATTCTTTTCAGGA
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * * * * * * *
41926 TCAGGCACCATAAACATAGTCTTCTCATAAGGATACAAGGTTTTGTA-ACTTTGGTTTCACAATA
66 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTG-ACGCTTTGGTTTCGCAAGA
* * *
41990 AAGGCTTTCTTACCACCAAATTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGACAAACATGGGT
130 AAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGT
* * * *
42055 TCTAGTAAAGATCTTCATACATTTTGTGATTAGACACTATAAACAAATTCCCCTCAATAGCGTAA
195 TCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAG-GTAA
* *
42120 ATGGTATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
259 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
* * **
42185 TTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTTAGAA
324 TTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * *
42250 CTAAGAACACATTCCCTTCATTAAGATACATGACAATGATGCCTTGGTGTCACAAAAAAAGCTTT
389 CCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
* * *
42315 TCCTTCCACCGTTTTTGATGGA
454 TCTTTCCACCATTTTTGATAGA
* * ** *
42337 ATTAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACAAATCCCCATTCACTTCAAGA
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * *
42402 GTAGGCACCATAAACATAGTGTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAA
66 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * * *
42467 AAGCTTTCTTACCACCAAATTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGGTT
131 AGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTT
* *
42532 CTAGTGAA-GATCTTCATGCATTTTGTGATTAGGCACTATAAACAAATTCCCCTCATTAGTGTAA
196 CTAGT-AAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAG-GTAA
* **
42596 ATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCTTATTTAACTTAAAATCAAAA
259 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
* * * *
42661 TTTATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAA
324 TTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * *
42726 CCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCATGAAAAGCTTT
389 CCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
42791 T-TTGTCCACCATTTTTGATAGA
454 TCTT-TCCACCATTTTTGATAGA
* *
42813 ATCTAA-GTTTGCCTCTTAAATAAGACAAACATGAATAGTCAAACT-ATCCCCATTCCTTTT-AG
1 ATC-AATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-CTTTTCAG
* * * *
42875 GATCAAGCACCATAAACATAGTCTTCTCATAAGGATAAACGATATTGACGCTTTGGTTTCTCAAG
64 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAG
** *
42940 AAAGGCTTTCTT-CCTACCAATTTTTGTAAAGTCCGAGTTCGTGCCTCAAATGAGACAAATATGG
129 AAAGGCTTTCTTACC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
43004 ATTCTAGTAAGGATCTTCGTACATTTTGTGATTAGGCACTATAAACAAATTCCCCTCATTAGCGT
193 GTTCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAG-GT
* * *
43069 AAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCATTGCCTTATTTTCCTTAAAATCAA
257 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAA
* * ** * * * *
43134 AATTCGTCCCTTAAAAATGACAAGCATTAATTCTCCTAACAATCTCCATTCTTTTCAAGATTCGA
322 AATTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* *
43199 AACCAGGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGTT
387 AACCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCT
* *
43264 TTTCTTTTCACCGTTTTTGATAGA
452 TTTCTTTCCACCATTTTTGATAGA
** * * *
43288 ATCAATGTTTGTCTCTTAAATAAGATGAGCATGAATAGTCATACAAATCCCCACTCTCTTT-AGG
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTCAGG
* * *
43352 AGTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCAGGA
65 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGA
* * *
43417 AAGGCTTTCTT-CTTACCAATTTCCTTG--AAGTCTAAGTTCGTGCCTCAATTAAGACAAACATG
130 AAGGCTTTCTTAC-CACCAATTT--TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * *
43479 GGTTCTTGTAAGGATCTCCATTCGTTTTGTGATCAGGCACTATAAACAAATTCTTCTCATTAGGT
192 GGTTCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGT
** * * * * *
43544 AAATAGATATTGATTTTTTTCCTTTGCATGGAAATCTATTCATTACCTTATTTTCCTAAAAATCA
257 AAAT-GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCA
* * * * *
43609 AAGGTT-ATCGCTTAAATACGATAAGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGATTG
321 AA-ATTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTG
* * *
43673 GGAACTAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTATCGCAAGAAAAG
385 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAG
43738 CTTTT-TTGTCCACCATTTTTGATAGA
450 CTTTTCTT-TCCACCATTTTTGATAGA
* * *
43764 ATCAAAGTTTGTCTCTTAAA-AACGATAAATATGAATAGTCATACTAATCCCCATTCTTTTTC-G
1 ATCAATGTTTGTCTCTTAAATAA-GACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCAG
* * * * * *
43827 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGTCACTTTGGTTTCACATG
64 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAG
* * * ** *
43892 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGAGTTCATTACTCAAATTAGACAAACATGGG
129 AAAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * *
43957 TTCTAGTAAGGATCTTCATACATTTTGTGATTAGGTACTATAAACACATTCTCCTCATTAGGACA
194 TTCTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGG-TA
* * * * * * *
44022 AATGATATTTATGATTTTATTTTGCACGAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAA
* *
44087 ATTCATCCCTT--A-AT-ACAAGCATC-AGTTCTCATAATAGTCTCCATTCTTTTCAAGATTCGG
323 ATTCATCCCTTAAATATGACAAGCATCGA-TTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * * **
44147 AACCAAGAACATATTCCCCTCAGTAGGATACATGACAATGATGCTTTGGTGTTGCAAGAAAAGCT
387 AACCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCT
44212 TTTCTTTCCACCATTTTTGATAGA
452 TTTCTTTCCACCATTTTTGATAGA
* * * * * * * *
44236 ATTAATGTTTGTCTATTAAATAAGACAAACATGAATTGTTATACAAATCTCCACTCTCTTCAGGA
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* *
44301 TTAGGCACCATAAACATTGTCTTCTCATAAGGATATACGATATTGACGCTTTAGTTTCGCAAGAA
66 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * * * * * *
44366 AGGCTTTTTTCCCACCAATTTTTTTGAAGTCTAAGTTCGTGCCTCAATTGAGACGAACATGGGCT
131 AGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTT
* * * * *
44431 CTTGTAAGGATCTCTC-TTCGTTTTGTGATCAGGCACTATAAACAAATTCTCCTCATTAGGAAAA
196 CTAGTAAGGATCT-TCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGG-TAA
* * *
44495 AAGATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCTTATTTTCCTTAAAATCAAAG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
* * * * * *
44560 TTTATCGCATAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
324 TTCATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA
* *
44625 CCAAGAAAACTTTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
389 CCAAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
*
44690 TCTTTCCACCATTTTTTATAGA
454 TCTTTCCACCATTTTTGATAGA
* * *
44712 ATCAATGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACAAATCCCTATTCTCTTT-AGG
1 ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTCAGG
* * * *
44776 ATTAGGCACCATAAACATAGTCTTCTCACAAGGATATACGATACTGATGCTTTGGTTTTGCAAGA
65 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGA
* * ** * * * * *
44841 AAGGCTTTTTTTCTTGCCAATTTTTGTAAAGTTTAAGTTCGTACCTCAATTGAGACAACCATAGG
130 AAGGCTTTCTTAC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * * * * *
44906 TTCTTGTAAGGATCTCCGCT-CATGTTGCGATCAGGCACTATAAACAAATTCT
194 TTCTAGTAAGGATCTTC-ATACATTTTGTGATTAGGCACTATAAACAAATTCT
44958 TGTAAGGCTT
Statistics
Matches: 3880, Mismatches: 559, Indels: 152
0.85 0.12 0.03
Matches are distributed among these distances:
469 179 0.05
470 137 0.04
471 66 0.02
472 662 0.17
473 76 0.02
474 91 0.02
475 1004 0.26
476 1560 0.40
477 101 0.03
478 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
ATCAATGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
AGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTT
CTAGTAAGGATCTTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGTAAAT
GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATT
CATCCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACC
AAGAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCACAAGAAAAGCTTTTC
TTTCCACCATTTTTGATAGA
Found at i:45065 original size:118 final size:118
Alignment explanation
Indices: 44857--45075 Score: 298
Period size: 118 Copynumber: 1.9 Consensus size: 118
44847 TTTTTTCTTG
* * *
44857 CCAATTTTTGTAAAGTTTAAGTTCGTACCTCAATTGAGACAACCATAGGTTCTTGTAAGGATCTC
1 CCAATTTTTGTAAAGTCTAAGTTCGTACCTCAATTGAGACAAACATAGGTTCTGGTAAGGATCTC
*
44922 CGCTCATGTTGCGATCAGGCACTATAAACAAATTCTTGTAAGGCTTTCTTCCA
66 CGATCATGTTGCGATCAGGCACTATAAACAAATTCTTGTAAGGCTTTCTTCCA
* *
44975 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCCAATT-AGACAAACATGGGTTCTGGTAAGGATCT
1 CCAATTTTTGTAAAGTCTAAGTTCGTACCT-CAATTGAGACAAACATAGGTTCTGGTAAGGATCT
* * * * * *
45039 TC-ATACATTTTGTGTTTAGGCACTATAAACACATTCT
65 CCGAT-CATGTTGCGATCAGGCACTATAAACAAATTCT
45076 CCTCATTAGG
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
117 1 0.01
118 81 0.93
119 5 0.06
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (118 bp):
CCAATTTTTGTAAAGTCTAAGTTCGTACCTCAATTGAGACAAACATAGGTTCTGGTAAGGATCTC
CGATCATGTTGCGATCAGGCACTATAAACAAATTCTTGTAAGGCTTTCTTCCA
Found at i:45285 original size:137 final size:136
Alignment explanation
Indices: 45038--45296 Score: 403
Period size: 137 Copynumber: 1.9 Consensus size: 136
45028 GGTAAGGATC
* * * *
45038 TTCATACATTTTGTGTTTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
1 TTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATAATATTGATAA
** * *
45103 TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCATTTAACA
66 TTTTTTTTGCACAAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAAATTCATCATTTAACA
45168 ATGATT
131 ATGATT
* *
45174 TTCATTCATTTTGTGATTAGGCACTATAAA-AAATTCTCCTCATTAGGATGAATAATATTTGATA
1 TTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATAATA-TTGATA
45238 ATTTTATTTTGCACAAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAAATTCATC
65 ATTTT-TTTTGCACAAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAAATTCATC
45297 CCTTAAATAA
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
135 24 0.22
136 38 0.34
137 49 0.44
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (136 bp):
TTCATACATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATAATATTGATAA
TTTTTTTTGCACAAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAAATTCATCATTTAACA
ATGATT
Found at i:47085 original size:476 final size:474
Alignment explanation
Indices: 45167--51898 Score: 6905
Period size: 476 Copynumber: 14.1 Consensus size: 474
45157 ATCATTTAAC
* * * *
45167 AATGATTTTCATTCATTTTGTGATTAGGCACTATAAA-AAATTCTCCTCATTAGGATGAATAATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *** * *
45231 TTTGATAATTTTATTTTGCACAAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAAATTCAT
66 -TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * ** * * *
45296 CCCTTAAATAATACAAGCATCAATTCTTATAACAGACTCCATTCTTTTCAAGATTGGGAACCAAG
130 CCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAG
* * * *
45361 AATACATTCCCTTCATTAAGATACATGACATTGA--------TGTCGCAAGAACAGCCTTTTTGT
195 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTTTT
* * * * *
45418 CCATCGTTTTTGATAGAATCAAAGTTTGTCTCATAAA-ATAGACAAATATAAATAGTCATACTAA
259 CCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATA-AGACAAACATGAATAGTCATACTAA
* * * *
45482 TCCCTATTCCTTTT-AGGATTAGGCACCATAAATATAGTCTTCTCAAAAAGATATACA-G-TATT
323 TCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAG-GATACATGATATT
* * * * * *
45544 GATGCTTTGG-TTTGTAGGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTATAAGTTCGTGCCT
385 GATGCTTTGGATTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTAAGTTCATGCCT
* *
45608 CAAATGAAACAAACATGGGTTCTAGT
449 CAAATGAGACAAACATGGATTCTAGT
*
45634 AAGGATCTTCATTCATTTTGTGATTAGGCACTATAAA-A-AGTTCTCCTCATTAGGATAAATGAT
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-TTCTCCTCATTAGGATAAATGAT
*
45697 ATTGAT-ATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * * * * * * *
45761 CTCTTAATTATGACAAACATCATTTCTCGTAATATTCTCCACTCTTTTCAAGATTGGGAACCAAG
130 CCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAG
* *
45826 ATA-ACATTCCCATT-A-TATGGATACATGACATTGATGCTTTGGTGTCTCTAGAAAAGCTTTTA
195 A-ACACATTCCC-TTCATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-
* * *
45888 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGATAAACTTGAATAGTCATGCT
256 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACT
* * * * * *
45953 AATCCCCATACTTTTCAGGATTAGGCACCATAAACTTAGACTTGTCATAAGGACACATAATATTG
321 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTG
* * ** *** * **
46018 ATGTTTTGGTTTTTCAAGAAAGGCTTTCTTCCCATTGATTTTT-TAAGGTCTAAGTTCGGGCCTC
386 ATGCTTTGGATTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTAAGTTCATGCCTC
46082 AAATGAGACAAACATGGATTCTAGT
450 AAATGAGACAAACATGGATTCTAGT
* * ** * * * * *
46107 AATAATCTTTATTGGTTTTGTGATTTGGCACTCTAAAAACATTATGCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
46172 TTGATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTGTTTTCCTTAAAATCAAAATTCATT
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
*** * *
46237 TTTTAAATATGACAAGCATCAATTCTTGTAATAGTCT-CAAGTCTTTTCAAGATTGGGAACCAAG
131 CCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAA-TCTTTTCAAGATTGGGAACCAAG
** * ** * * *
46301 ATGACATTCCTTTTGTTGGGATACACGACATTGATGCTTTGGTGTCTCCAA-AAAAGCTTTTTTT
195 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTTTT
* *
46365 CCACCGTTTTTTATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACCAAT
259 CCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * *
46430 CTCCATTCTTTTTAGGATTAGGCACCACAAACTTAGTCTTGTCATAAGGACACATAATATTGATG
324 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATG
* * *** * * *
46495 CATTGGTTTCGCAAGAAAGGCTTTCTTCCTATTAATTTTTGTAAAGTCTAAGTTTAGGCCCCAAA
389 CTTTGGATTCGCAAGAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
*
46560 TGAGACAAACATAGATTCTAGT
453 TGAGACAAACATGGATTCTAGT
* * * * * *
46582 AAAGATCTTTATTCGTTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGGTAAATAATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* ** *
46647 TTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCAGC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * * * * *
46712 CCATAAATAAGACAAGCATCGATTCTCATAATACTCTCCAATCGTTTCAGGATTGGGAACCAAAA
131 CCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAGA
* * *
46777 ACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCTTTC
196 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTC
* * * * *
46842 AACCGTTTTTGATAGGATCAATA-TTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAAT
260 CACCGTTTTTGATAGAATCAA-AGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAAT
* *
46906 CCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-TAAATGATACATGATATTGAT
324 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-AAGGATACATGATATTGAT
* * * *
46970 GCTTTGGACTCGCAGGAGAGGCTTTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTCATGCCTCAA
388 GCTTTGGATTCGCAAGAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTAAGTTCATGCCTCAA
*
47035 ATGAGATAAACATGGATTCTAGT
452 ATGAGACAAACATGGATTCTAGT
* ** * *
47058 AATGATCTTCGTTGGTTTTGGGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
47123 TTGATGATTTTTTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAATTCAT-
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * * *
47187 -CAGTCAAATATGACAAGCATCAATTCTCGTAATACTCT-CAAGTCTTTTCAAGACTGGAAACCA
131 CCA-T-AAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAA-TCTTTTCAAGATTGGGAACCA
* * * *
47250 AGATCGCATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTC-TACAGAAAAGCTTTTA
193 AGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA-AGAAAAGCTTTT-
* * ** * *
47314 TTTCCATCGTTTTT--TATAATCAAAGTTTGTATCTTAAACCAGACAAACATTAAAAGTCATACT
256 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACT
** * *
47377 AATCCCCATTCTTTTCAGGATTAGAAATCATAAACATAGTCTTCTCATAAGGATACATGGTATTG
321 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTG
** * * * *
47442 ACACTTT-GATTTCGCAAGAAAAGCTTTCTTTCCACCAATTTTTGCAAAGTATAAGTTCATGCCT
386 ATGCTTTGGA-TTCGCAAGAAAGGCTTTC-TTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCT
* *
47506 TAAA-GAGACAAACTTGGATTCTAGT
449 CAAATGAGACAAACATGGATTCTAGT
* * *
47531 AATGATCTCCTTTCATTTTGTGATTAGG-ATCCATAAACACATTCTCCTCATTAGGATAAATGAT
1 AATGATCTTCATTCATTTTGTGATTAGGCA-CTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
47595 ATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTTCTAAAAATCTAAGTTCAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * * * *
47660 CCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAA
130 CCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAG
** * * * *
47725 AACACATTTGCTTCATTAGGATGCATGATATTGATGCTATGGTGTCGCAAGAAAAGCCTTTTTGT
195 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTTTT
** * * * *
47790 CCACTATTTTTGATAGAATCAAAGTTTGTATAC-TAAAAAAGACAACCATGAATAGTCAAACTTA
259 CCACCGTTTTTGATAGAATCAAAGTTTGTAT-CTTAAATAAGACAAACATGAATAGTCATACTAA
** * * * * * *
47854 TCCGTATTCTTTTCAGGATTGGGCACCATAAACTTACTCTTCTCATAAGGATAGACGATATTGAC
323 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGAT
* * * *
47919 GCTTT-GATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCAGGCCTTA
388 GCTTTGGA-TTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
**
47983 AATGAGATGAACATGGATTCTAGT
451 AATGAGACAAACATGGATTCTAGT
* * ** *
48007 AATGATCTTCATTCATTTTGTGGTTAGGCACTATGAACACATTCTCCTCGCTAGGGTAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
48072 TTTATGATTTTCTTTTGCATGGAAATTTTTTCTTTGTCCTA-TTTCTCTTAAAAT-AAAAGTTCA
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CTTAAAATCAAAA-TTCA
* ** *
48135 TCCCATAAATAAGACAAGAATTGATTCTCGTAATAGTCTCCAATCTTTTCAGGATTGGGAACCAA
129 TCCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAA
* * * *
48200 AAACACATTCCCTTCATTAGGATACATGAAATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCTT
194 GAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TT
* * * * * * * * *
48265 TCAACCGTTTTTGATAGAATTAATGTTTGTCTCTTAAATAGGACAAATATAAAAACTCATACTAA
258 TCCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAA
* *
48330 TCCCCATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCCA-AAGGATACATGATATTGA
323 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAAGGATACATGATATTGA
* * * * * **
48394 TG-TGTTGGTTTCACAAGAGAGGCTTTCTTCCCCCTATTTTTGAAAAGTCTAAGTTTGTGCCTCA
387 TGCT-TTGGATTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
**
48458 AATGAGATGAACATGGATTCTAGT
451 AATGAGACAAACATGGATTCTAGT
* ** * ** *
48482 ATTGATCTTCATTGGTTTTTGTGATTAGGCACTATAAACACATTTTCCTTGTTAGGGTAAATGAT
1 AATGATCTTCATT-CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
*
48547 ATTGATGA---T-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATACAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * * * * * *
48608 CCCTTAAATATGACAAGCATCAATTCTCGTAATATTCTCCATTATTTTCAAGATTGAGAACCAGG
130 CCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAG
** * * * ** *
48673 ATGACATTTCCTT-TTTTGGATACATGACATTGATGCTTTGGCATCTTCAA-AAAAGCTTTTATT
195 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTT-TT
* * *
48736 TCCACCATTTTTGA-ACGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAAAAGTCATTCTA
258 TCCACCGTTTTTGATA-GAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTA
* ** * * ** *
48800 ATCCCCATTCTTTTCAAGATTAGAAACCATAAACATAGCCTTCTGATAAGGATACACAATATTGC
322 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGA
** * * * *
48865 CACTTT-GATTTCACAAGAAAAGCTTTCTTTTCCCCAATTTTTGTAAAGTATAAGTTCATGCCTC
387 TGCTTTGGA-TTCGCAAGAAAGGCTTTC-TTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* *
48929 AAA-GAGGCAAACTTGGATTCTAGT
450 AAATGAGACAAACATGGATTCTAGT
* * * **
48953 AATGATCTTCTTTCATTTTATGAATAGGCACTATAAACACATTCTCCTCATTACAATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * *
49018 TTGATGATTTTATTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * ** * *
49083 CCATAAATAAGACAAGCATCGATTCTCATAGCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
131 CCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAGA
* * * * * *
49148 ACACATTCCCTTCATTTGGATAGATGACACTAATGCTTTGGTGTCGTAAGAAAAGCCTTTTTGTC
196 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTTTTC
* * * * *
49213 CACTGTTTTT-ATAAAAGCAAAGTTTGTTTGC-TAAATAAGACAAACATGAATAGTCAAACTAAT
260 CACCGTTTTTGATAGAATCAAAGTTTGTAT-CTTAAATAAGACAAACATGAATAGTCATACTAAT
** * * *
49276 CCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCCA-AAAGATACGTGATACTGAT
324 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAAGGATACATGATATTGAT
* *
49340 GCTTTGGTTTCGCAAGAGAGGCTTTCTTCCCCCCAATTTTTG-AAATGTCTAAGTTCATGCCTCA
388 GCTTTGGATTCGCAAGAAAGGCTTTCTT-CCCCCAATTTTTGTAAA-GTCTAAGTTCATGCCTCA
* * *
49404 AATAAGATAAACAAGGATTCTAGT
451 AATGAGACAAACATGGATTCTAGT
* ** ** * * *
49428 AATGAACTTTGTTGGTTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAAAGATT
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
49493 TTGATGATTTTTTTTTTGCATGGAAATCTTTTCTTGGCCCTATTTTCCTTAAAATCAAAATTCAT
66 TTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * * *
49558 CCCTTAAATATA-ACAAGCATCAATTCTCGTAATAGTCTCCAGTATTTTCAAGATTGGAAACCAA
130 CCCATAAATA-AGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAA
* * * *
49622 GATCACATTCCCTTTATTAGGATGCATGACATTGATGCTTTGG-GTTC-TACAGAAAAGCTTTTA
194 GAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCA-AGAAAAGCTTTT-
* * * * *
49685 TTTCCACCGTTTTTTTATAGAATCAAAGTATGTATCTTAAATAAGACAAACTTCAAAAGTCATAC
256 TTTCCACCG-TTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATAC
** ** * * *
49750 TAATCCCCATTCTTTTCAAAATTAGAAATCACAAACATAGTCTTCTCATAAGGATACA-CAGTAT
320 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGA-TAT
* * * * ** *
49814 TGA--CATGTT-GATTTTGCAAGAAAAGCTTTCTTTCCACCAATTTTTGTAAAGTATCTGTTCGT
384 TGATGC-T-TTGGA-TTCGCAAGAAAGGCTTTC-TTCCCCCAATTTTTGTAAAGTCTAAGTTCAT
*
49876 GCCTCAAA-GAGACAAACTTGGATTCTAGT
445 GCCTCAAATGAGACAAACATGGATTCTAGT
* *
49905 AATGATCTTCTTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTATGATAAATGAT
1 AATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
49970 ATTGATGACTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * *
50035 CCCATAAATAAGACAAGCATCGATTCTCATAACAGTCT-CAATTCTTTTCAAGATTGGGAACCAA
130 CCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAA-TCTTTTCAAGATTGGGAACCAA
* *
50099 GAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGTAAGAAAAGCTTTTTTG
194 GAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT-
** * * * * *
50164 TCCACCAATTTTGGTAGAATCAAAGTTTCTCTGC-TAAATAAGACAAACATGAATAGTTAAACTA
258 TCCACCGTTTTTGATAGAATCAAAGTTTGTAT-CTTAAATAAGACAAACATGAATAGTCATACTA
** * * * *
50228 ATCCCCATTCTTTTCAGGGCTAGGCAGCATAAACAT-GCTTTTCTCATAAGGGTAGATGAT-TTG
322 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG-TCTTCTCATAAGGATACATGATATTG
* * * * * * * **
50291 ACGCTTTGGTTTCACAAGAAAGGCTTTCTTCTCACCAA-ATTTGTAAAGCCTATGTTCGGGCCTC
386 ATGCTTTGGATTCGCAAGAAAGGCTTTCTTC-CCCCAATTTTTGTAAAGTCTAAGTTCATGCCTC
*
50355 AAATGAGACGAACATGGATTCTAGT
450 AAATGAGACAAACATGGATTCTAGT
* * * * ** * *
50380 AAGGATCTTCATTCACTTTGT-AGTTAGGTACTAT-AATACATTCTCCTTGTTAAGTTAAATGAT
1 AATGATCTTCATTCATTTTGTGA-TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* *
50443 ATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
** * * *** *
50508 CCCATAAATAAGACAAGCATTGATTCTCATAATAGTCTCGAATCTTTTTGGGATTGGGAACCAAA
130 CCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAG
* *
50573 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGACAAGTTTTTCTTT
195 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTT
* * * * * *
50638 CAACCATTTTTGATCA-AATCAATGTTTGTCTCTTAAATAGGACAAACATGAATACTCATACTAA
259 CCACCGTTTTTGAT-AGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
50702 TCCCAATTCTTTTCAGGATTATGCACCATGAACATAGTCTTCTCCA-AAGGATACATGATATTGA
323 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAAGGATACATGATATTGA
* * *
50766 TGCTTTGGACTT-GCAGGAGAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTC
387 TGCTTTGGA-TTCGCAAGAAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTC
*
50830 AAATGAGATAAACATGGATTCTAGT
450 AAATGAGACAAACATGGATTCTAGT
* ** * *
50855 AATGATCTTCGTTGGTTTTGGGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
50920 TTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * * * * * * *
50985 TCTTAAATATGACAAACATCAATTCCCGTAATAGTCTCTAGTCTTTTCAAGGTTGGGAACCAAGA
131 CCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAGA
* ** * ** * * *
51050 TCACATTCTTTTTATTAGGATACATGACATTGATTTTTTGGTGTCTTCAAAAAAATCTTTTATTT
196 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTT-TTT
* ** * * * *
51115 CCACTGGATTTGATAGAATCAAAGTTTGTATTTTAAATATGACAAACATAAAAAGTCATACTAAT
259 CCACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAAT
* ** * *
51180 CCCCATTCTTTTCAAGATTAGAAACCGTAAACATAGTCTTCTCATAAGGATACACGATATTGACT
324 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGA-T
* * ** * * * * *
51245 -CTTT-GATTTCGCTAGAAAAGCTCATAAGGATACACGGTATTGACTC-TTTGATTTCTCAAG-A
388 GCTTTGGA-TTCGCAAGAAAGGCT--T-----T---C----TTCCCCCAATT--TTTGTAAAGTC
* * * * * * * *
51306 AAAGCTTTCTTTCCACCAATTTTTGTAGA-ATACAAGTTCGTGCTTCAAAG-
436 TAAG--TTCATGCC-TCAA---ATG-AGACAAAC-A--T-G-GATTC-TAGT
** * * *
51356 AGACAAACTTGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAAATACATTCT
1 A-ATGATCTT-CA------------------TTCATTTTGTGATTAGGCACTATAAACACATTCT
*
51421 CCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
46 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* ** * * * * *
51486 CCTTATAATCAATGTTAATCTCATAAATAAGACAAGCATCGATTCTCATAAAAGTCT-CAATTCT
111 CCTTAAAATCAAAATTCATCCCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAA-TCT
* * * *
51550 TTTCAAGATTGGGAACTAAGAACACATTCTCGTCATTAGGATACATGACATTGATGCTTTGGTAT
175 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * *
51615 CGCAAGAAAAGCCTTTTTGTCCACCATTTTTGATAGAATTAAAGTTTGTCTGC-TAAATAAGACA
240 CGCAAGAAAAG-CTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTAT-CTTAAATAAGACA
* * * * ** * * * *
51679 AGCATGAATAGTCAAACTAACCCCCATTCTTTTTAGGGCTAGGCACCATAAACGTACTTTTCTGA
303 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* ** * * *
51744 TAAGGATAGATGATATTGACACTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAA-ATTTGTAA
368 TAAGGATACATGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAA
** **
51808 AGTCTGTGTTCGA-GCCTCAAATGAGATGAACATGGATTCTAGT
432 AGTCTAAGTTC-ATGCCTCAAATGAGACAAACATGGATTCTAGT
* * *
51851 AAAGATCTTCATTCTTTTTGT-AGTTAGGCACTATGAACACATTCTCCT
1 AATGATCTTCATTCATTTTGTGA-TTAGGCACTATAAACACATTCTCCT
51899 TGTGATGAAA
Statistics
Matches: 5203, Mismatches: 870, Indels: 376
0.81 0.13 0.06
Matches are distributed among these distances:
464 2 0.00
465 131 0.03
466 9 0.00
467 58 0.01
470 52 0.01
471 195 0.04
472 155 0.03
473 730 0.14
474 717 0.14
475 928 0.18
476 1267 0.24
477 335 0.06
478 192 0.04
479 6 0.00
484 1 0.00
487 1 0.00
489 2 0.00
490 5 0.00
491 8 0.00
492 6 0.00
493 4 0.00
494 7 0.00
495 5 0.00
496 6 0.00
497 5 0.00
499 5 0.00
500 5 0.00
501 5 0.00
502 7 0.00
503 3 0.00
504 5 0.00
505 7 0.00
506 4 0.00
507 1 0.00
510 1 0.00
513 1 0.00
518 1 0.00
520 127 0.02
521 204 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
CCATAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAGA
ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCC
ACCGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAATCC
CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCT
TTGGATTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTCTAGT
Found at i:47884 original size:949 final size:944
Alignment explanation
Indices: 45167--51262 Score: 6649
Period size: 949 Copynumber: 6.4 Consensus size: 944
45157 ATCATTTAAC
* * * *
45167 AATGATTTTCATTCATTTTGTGATTAGGCACTATAAA-AAATTCTCCTCATTAGGATGAATAATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *** * *
45231 TTTGATAATTTTATTTTGCACAAAAATCTTTTCCTTGCCCTATTATCCTTAAAATCAAAATTCAT
66 -TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* ** * * * *
45296 CCCTTAAATAAT-ACAAGCATCAATTCTTATAACAGACTCCATTCTTTTCAAGATTGGGAACCAA
130 --CATAAAT-ATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAA
* * *
45360 GAAT-ACATTCCCTTCATTAAGATACATGACATTGATG---T--CG-C-A-AGAACAGCCTTTTT
192 G-ATCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTACAGAAAAG-CTTTTT
* * * * *
45416 GTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCATAAA-ATAGACAAATAT-AAATAGTCATAC
255 TTCCACCGTTTTT--TAGAATCAAAGTTTGTATCTTAAATA-AGACAAACATGAAA-AGTCATAC
* * * *
45479 TAATCCCTATTCCTTTT-AGGATTAGGCACCATAAATATAGTCTTCTCAAAAAGATATACA-G-T
316 TAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAG-GATACATGAT
* * * * * *
45541 ATTGATGCTTTGGTTT-GTAGGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTATAAGTTCGTG
378 ATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * *
45605 CCTCAAATGAAACAAACATGGGTTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAA
442 CCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCTTTCATTTTGTGATTAGGCACTATAA
*
45670 A-A-AGTTCTCCTCATTAGGATAAATGATATTGAT-ATTTTCTTTTGCAT-AGAAATCTTTTCTT
506 ACACA-TTCTCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTT
* * * * * *
45731 TGCCCTATTTTCCTTAAAATCAAAATTCATCTCTTAATTATGACAAACATC-ATTTCTCGTAATA
569 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCATAAATAAGACAAGCATCGA-TTCTCATAATA
* * *
45795 TTCTCCACTCTTTTCAAGATTGGGAACCAAGATA-ACATTCCCATT-A-TATGGATACATGACAT
633 GTCTCCAATCTTTTCAAGATTGGGAACCAA-AAACACATTCCC-TTCATTA-GGATACATGACAT
* * *
45857 TGATGCTTTGGTGTCTCTAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTTGTAT
695 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTAT
* * * *
45922 CTTAAATAAGATAAACTTGAATAGTCATGCTAATCCCCATACTTTTCAGGATTAGGCACCATAAA
760 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * * * **
45987 CTTAGACTTGTCATAAGGACACATAATATTGATGTTTTGGTTTTTCAAGAAAGGCTTTCTTCCCA
825 CATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTCTTCCC-
*** * **
46052 TTGATTTTT-TAAGGTCTAAGTTCGGGCCTCAAATGAGACAAACATGGATTCTAGT
889 CCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * ** * * * * *
46107 AATAATCTTTATTGGTTTTGTGATTTGGCACTCTAAAAACATTATGCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
46172 TTGATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTGTTTTCCTTAAAATCAAAATTCATT
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCA--
** *
46237 TTTTAAATATGACAAGCATCAATTCTTGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAGA
129 TCATAAATATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAGA
* * ** * * * *
46302 TGACATTCCTTTTGTTGGGATACACGACATTGATGCTTTGGTGTCTCCAAAAAAGCTTTTTTTCC
194 TCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTACAGAAAAGCTTTTTTTCC
* * *
46367 ACCGTTTTTTATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACCAATCT
259 ACCG-TTTTT-TAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAAAAGTCATACTAATCC
* * * * * * * *
46432 CCATTCTTTTTAGGATTAGGCACCACAAACTTAGTCTTGTCATAAGGACACATAATATTGATGCA
322 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCT
** * * *
46497 TTGGTTTCGCAAGAAAGGCTTTCTTCCTATTAATTTTTGTAAAGTCTAAGTTTAGGCCCCAAATG
387 TTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
46562 AGACAAACATAGATTCTAGTAAAGATCTTTATTCGTTTTGTGATTAGGCACTATAAACACATTCT
451 AGACAAACATGGATTCTAGTAATGATCTCT-TTCATTTTGTGATTAGGCACTATAAACACATTCT
* *
46627 CCTCGTTAGGGTAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
515 CCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
** * * *
46692 CCTTAAAATCAATGTTCAGCCCATAAATAAGACAAGCATCGATTCTCATAATACTCTCCAATCGT
580 CCTTAAAATCAAAATTCATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCAATCTT
* *
46757 TTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTC
645 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * * * *
46822 ACAAGAAAAGTTTTTCTTTCAACCGTTTTTGATAGGATCAATA-TTTGTCTCTTAAATAAGACAA
710 GCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAA-AGTTTGTATCTTAAATAAGACAA
* * *
46886 ACAAGAATACTCATACTAATCCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-T
774 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
46950 AAATGATACATGATATTGATGCTTTGGA-CTCGCAGGAGAGGCTTTCTTCCCCCTAATTTTTGAA
839 -AAGGATACATGATATTGATGCTTT-GATTTCGCAAGAAAGGCTTTCTTCCCCC-AATTTTTGTA
*
47014 AAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGT
901 AAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* ** * *
47058 AATGATCTTCGTTGGTTTTGGGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
47123 TTGATGATTTTTTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAATTCATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * *
47188 AGTCAAATATGACAAGCATCAATTCTCGTAATACTCTCAAGTCTTTTCAAGACTGGAAACCAAGA
131 A-T-AAATATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAGA
* *
47253 TCGCATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCTACAGAAAAGCTTTTATTTC
194 TCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTACAGAAAAGCTTTT-TTTC
* * ** *
47318 CATCGTTTTTTATAATCAAAGTTTGTATCTTAAACCAGACAAACATTAAAAGTCATACTAATCCC
258 CACCGTTTTTTAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAAAAGTCATACTAATCCC
** * * *
47383 CATTCTTTTCAGGATTAGAAATCATAAACATAGTCTTCTCATAAGGATACATGGTATTGACACTT
323 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTT
* * * * *
47448 TGATTTCGCAAGAAAAGCTTTCTTTCCACCAATTTTTGCAAAGTATAAGTTCATGCCTTAAA-GA
388 TGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* *
47512 GACAAACTTGGATTCTAGTAATGATCTCCTTTCATTTTGTGATTAGG-ATCCATAAACACATTCT
452 GACAAACATGGATTCTAGTAATGATCT-CTTTCATTTTGTGATTAGGCA-CTATAAACACATTCT
* *
47576 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTT
515 CCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * * *
47641 TCTAAAAATCTAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTT
580 CCTTAAAATCAAAATTCATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCAATCTT
* ** * * *
47706 TTCAAGATTGAGAACCAAAAACACATTTGCTTCATTAGGATGCATGATATTGATGCTATGGTGTC
645 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * *
47771 GCAAGAAAAGCCTTTT-TGTCCACTATTTTTGATAGAATCAAAGTTTGTATAC-TAAAAAAGACA
710 GCAAGAAAAG-CTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTAT-CTTAAATAAGACA
* * * ** * * *
47834 ACCATGAATAGTCAAACTTATCCGTATTCTTTTCAGGATTGGGCACCATAAACTTACTCTTCTCA
773 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * *
47899 TAAGGATAGACGATATTGACGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
838 TAAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAA
* * * **
47964 AGTCTATGTTCAGGCCTTAAATGAGATGAACATGGATTCTAGT
902 AGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * ** *
48007 AATGATCTTCATTCATTTTGTGGTTAGGCACTATGAACACATTCTCCTCGCTAGGGTAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
48072 TTTATGATTTTCTTTTGCATGGAAATTTTTTCTTTGTCCTA-TTTCTCTTAAAAT-AAAAGTTCA
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CTTAAAATCAAAA-TTCA
* * ** *
48135 TCCCATAAATAAGACAAGAATTGATTCTCGTAATAGTCTCCAA-TCTTTTCAGGATTGGGAACCA
129 T--CATAAATATGACAAGCATCAATTCTCGTAATAGTCT-CAAGTCTTTTCAAGATTGGGAACCA
* * * *
48199 AAAACACATTCCCTTCATTAGGATACATGAAATTGATGCTTTGGTGTC-ACAAGAAAAGTTTTTC
191 AGATCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTAC-AGAAAAGCTTTT-
* * * * * * * *
48263 TTTCAACCGTTTTTGATAGAATTAATGTTTGTCTCTTAAATAGGACAAATATAAAAACTCATACT
254 TTTCCACCGTTTTT--TAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAAAAGTCATACT
* *
48328 AATCCCCATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCCA-AAGGATACATGATATT
317 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAAGGATACATGATATT
* * * * * * **
48392 GATG-TGTTGGTTTCACAAGAGAGGCTTTCTTCCCCCTATTTTTGAAAAGTCTAAGTTTGTGCCT
381 GACGCT-TTGGTTTCGCAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
** * ***
48456 CAAATGAGATGAACATGGATTCTAGTATTGATCTTCATTGGTTTTTGTGATTAGGCACTATAAAC
445 CAAATGAGACAAACATGGATTCTAGTAATGATC-TC-TTTCATTTTGTGATTAGGCACTATAAAC
* * * *
48521 ACATTTTCCTTGTTAGGGTAAATGATATTGATGA---T-TTTTGCATGGAAATCTTTTCTTTGCC
508 ACATTCTCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * * *
48582 CTATTTTCCTTAAAATCAAAATACATCCCTTAAATATGACAAGCATCAATTCTCGTAATATTCTC
573 CTATTTTCCTTAAAATCAAAATTCATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTC
* * * ** ** * * *
48647 CATTATTTTCAAGATTGAGAACCAGGATGACATTTCCTT-TTTTGGATACATGACATTGATGCTT
638 CAATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
** *
48711 TGGCATCTTCAA-AAAAGCTTTTATTTCCACCATTTTTGA-ACGAATCAAAGTTTGTATCTTAAA
703 TGGTGTC-GCAAGAAAAGCTTTTATTTCCACCATTTTTGATA-GAATCAAAGTTTGTATCTTAAA
* * * ** *
48774 TAAGACAAACATGAAAAGTCATTCTAATCCCCATTCTTTTCAAGATTAGAAACCATAAACATAGC
766 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* ** *** * * *
48839 CTTCTGATAAGGATACACAATATTGCCACTTTGATTTCACAAGAAAAGCTTTCTTTTCCCCAATT
831 CTTCTCATAAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTC-TTCCCCCAATT
* * *
48904 TTTGTAAAGTATAAGTTCATGCCTCAAA-GAGGCAAACTTGGATTCTAGT
895 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * * **
48953 AATGATCTTCTTTCATTTTATGAATAGGCACTATAAACACATTCTCCTCATTACAATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * *
49018 TTGATGATTTTATTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT-
* * * ** * * *
49083 CCATAAATAAGACAAGCATCGATTCTCATAGCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
130 -CATAAATATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAGA
* * * * * *
49148 ACACATTCCCTTCATTTGGATAGATGACACTAATGCTTTGGTGTCGTA-AGAAAAGCCTTTTTGT
194 TCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-TACAGAAAAG-CTTTTTTT
* * * * * *
49212 CCACTGTTTTTATAAAAGCAAAGTTTGTTTGC-TAAATAAGACAAACATGAATAGTCAAACTAAT
257 CCACCGTTTTT-TAGAATCAAAGTTTGTAT-CTTAAATAAGACAAACATGAAAAGTCATACTAAT
** * * * *
49276 CCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCCA-AAAGATACGTGATACTGAT
320 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAAGGATACATGATATTGAC
* *
49340 GCTTTGGTTTCGCAAGAGAGGCTTTCTTCCCCCCAATTTTTG-AAATGTCTAAGTTCATGCCTCA
384 GCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAA-GTCTAAGTTCATGCCTCA
* * * * * **
49404 AATAAGATAAACAAGGATTCTAGTAATGAACTTTGTTGGTTTTGTGATTAGGCACTATAAACACA
447 AATGAGACAAACATGGATTCTAGTAATGATCTCT-TTCATTTTGTGATTAGGCACTATAAACACA
* * * * * *
49469 TTCTCCTCTTTAGGATAAAAGATTTTGATGATTTTTTTTTTGCATGGAAATCTTTTCTTGGCCCT
511 TTCTCCTCGTTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * *
49534 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATA-ACAAGCATCAATTCTCGTAATAGTCTCC
575 ATTTTCCTTAAAATCAAAATTCATCCCATAAATA-AGACAAGCATCGATTCTCATAATAGTCTCC
* * * * * * *
49598 AGTATTTTCAAGATTGGAAACCAAGATCACATTCCCTTTATTAGGATGCATGACATTGATGCTTT
639 AATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * *
49663 GG-GTTC-TACAGAAAAGCTTTTATTTCCACCGTTTTTTTATAGAATCAAAGTATGTATCTTAAA
704 GGTG-TCGCA-AGAAAAGCTTTTATTTCCACC-ATTTTTGATAGAATCAAAGTTTGTATCTTAAA
* * * ** ** * *
49726 TAAGACAAACTTCAAAAGTCATACTAATCCCCATTCTTTTCAAAATTAGAAATCACAAACATAGT
766 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
49791 CTTCTCATAAGGATACA-CAGTATTGA--CATGTTGATTTTGCAAGAAAAGCTTTCTTTCCACCA
831 CTTCTCATAAGGATACATGA-TATTGATGC-T-TTGATTTCGCAAGAAAGGCTTTC-TTCCCCCA
* ** * *
49853 ATTTTTGTAAAGTATCTGTTCGTGCCTCAAA-GAGACAAACTTGGATTCTAGT
892 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* *
49905 AATGATCTTCTTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTATGATAAATGAT
1 AATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
49970 ATTGATGACTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCAT
65 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* * * * *
50035 CCCATAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTTCAAGATTGGGAACCAAG
130 --CATAAATATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAG
* *
50100 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGTA-AGAAAAGCTTTTTTG
193 ATCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-TACAGAAAAGCTTTTTT-
* * * * * * *
50164 TCCACCAATTTTGGTAGAATCAAAGTTTCTCTGC-TAAATAAGACAAACATGAATAGTTAAACTA
256 TCCACC-GTTTT-TTAGAATCAAAGTTTGTAT-CTTAAATAAGACAAACATGAAAAGTCATACTA
** * * * *
50228 ATCCCCATTCTTTTCAGGGCTAGGCAGCATAAACAT-GCTTTTCTCATAAGGGTAGATGAT-TTG
318 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG-TCTTCTCATAAGGATACATGATATTG
* * * * **
50291 ACGCTTTGGTTTCACAAGAAAGGCTTTCTTCTCACCAA-ATTTGTAAAGCCTATGTTCGGGCCTC
382 ACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * * * *
50355 AAATGAGACGAACATGGATTCTAGTAAGGATCTTCATTCACTTTGT-AGTTAGGTACTAT-AATA
446 AAATGAGACAAACATGGATTCTAGTAATGATC-TCTTTCATTTTGTGA-TTAGGCACTATAAACA
* * * * *
50418 CATTCTCCTTGTTAAGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
509 CATTCTCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * *
50483 TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATTGATTCTCATAATAGTCTCG
574 TATTTTCCTTAAAATCAAAATTCATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCC
***
50548 AATCTTTTTGGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
639 AATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * * * *
50613 GGTGTCGCAAGACAAGTTTTTCTTTCAACCATTTTTGATCA-AATCAATGTTTGTCTCTTAAATA
704 GGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGAT-AGAATCAAAGTTTGTATCTTAAATA
* * * * *
50677 GGACAAACATGAATACTCATACTAATCCCAATTCTTTTCAGGATTATGCACCATGAACATAGTCT
768 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
* * *
50742 TCTCCA-AAGGATACATGATATTGATGCTTTGGACTT-GCAGGAGAGGCTTTCTTCCCCCCAATT
833 TCT-CATAAGGATACATGATATTGATGCTTT-GATTTCGCAAGAAAGGCTTTCTT-CCCCCAATT
* *
50805 TTTGAAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGT
895 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* ** * *
50855 AATGATCTTCGTTGGTTTTGGGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATA
1 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
50920 TTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
66 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCA--
* * * * *
50985 TCTTAAATATGACAAACATCAATTCCCGTAATAGTCTCTAGTCTTTTCAAGGTTGGGAACCAAGA
129 TCATAAATATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAGA
** * ** * * *
51050 TCACATTCTTTTTATTAGGATACATGACATTGATTTTTTGGTGTCTTCAAAAAAATCTTTTATTT
194 TCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTAC-AGAAAAGCTTTT-TTT
* ** * * *
51115 CCACTGGATTTGATAGAATCAAAGTTTGTATTTTAAATATGACAAACATAAAAAGTCATACTAAT
257 CCAC-CG-TTTTTTAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAAAAGTCATACTAAT
* ** * * *
51180 CCCCATTCTTTTCAAGATTAGAAACCGTAAACATAGTCTTCTCATAAGGATACACGATATTGACT
320 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACG
* *
51245 CTTTGATTTCGCTAGAAA
385 CTTTGGTTTCGCAAGAAA
51263 AGCTCATAAG
Statistics
Matches: 4374, Mismatches: 659, Indels: 235
0.83 0.13 0.04
Matches are distributed among these distances:
939 4 0.00
940 165 0.04
941 22 0.01
942 1 0.00
943 1 0.00
944 1 0.00
945 186 0.04
946 304 0.07
947 307 0.07
948 244 0.06
949 1009 0.23
950 912 0.21
951 530 0.12
952 322 0.07
953 272 0.06
954 94 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (944 bp):
AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
ATAAATATGACAAGCATCAATTCTCGTAATAGTCTCAAGTCTTTTCAAGATTGGGAACCAAGATC
ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTACAGAAAAGCTTTTTTTCCAC
CGTTTTTTAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAAAAGTCATACTAATCCCCAT
TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGG
TTTCGCAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACA
AACATGGATTCTAGTAATGATCTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCGT
TAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
AATCAAAATTCATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCAATCTTTTCAAG
ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
AAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAA
TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
CATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTAAGT
TCATGCCTCAAATGAGACAAACATGGATTCTAGT
Found at i:51286 original size:45 final size:45
Alignment explanation
Indices: 51220--51311 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
51210 ACATAGTCTT
*
51220 CTCATAAGGATACACGATATTGACTCTTTGATTTCGCTAGAAAAG
1 CTCATAAGGATACACGATATTGACTCTTTGATTTCGCAAGAAAAG
* *
51265 CTCATAAGGATACACGGTATTGACTCTTTGATTTCTCAAGAAAAG
1 CTCATAAGGATACACGATATTGACTCTTTGATTTCGCAAGAAAAG
51310 CT
1 CT
51312 TTCTTTCCAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (45 bp):
CTCATAAGGATACACGATATTGACTCTTTGATTTCGCAAGAAAAG
Found at i:54199 original size:474 final size:474
Alignment explanation
Indices: 52987--55182 Score: 2478
Period size: 472 Copynumber: 4.7 Consensus size: 474
52977 CTCAAGGCTT
* * * *
52987 TCTTCATTCGTTTTGTGATTAGGCACTATAATCACATTCTCATCGTTAAGATAAATGATATTGAT
1 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCATCCTTAGGATAAATGATATTGAT
*
53052 GGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTA
66 GGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* *
53117 AATAAGGCAAGCAAT-GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAATCC-AAAACA
131 AATAAGACAAGC-ATCGATTCTCATAACAGTCTCCA-TCTTTTCAAGATTGGGAA-CCAAAAACA
* * * * * * * *
53180 CATTCCTTTCATTAGAAAACATGACATTGATGCTTTGGTGTCACAGGAAAAGCTTTTCATTCCAC
193 CATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTC-TTTCAC
** * * * * * * *
53245 TATTTTTGATAAAAGCAAAGTTTGCCTCTTATATAAGAAAAACATGAATACTCATACTAATCCCC
257 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAACCCC
** ** * * ** *
53310 ATTCTTTTTTGGATTTCGCACCATAAACATAGTTTTCTCATTAGGATAGATGATATTGATGCTTT
322 ATTCTTTTCAGGATTAGGCACCAGAAACATAGTCTTCTCATTAGGATAGACAATATTGATGCATT
* * * ** * * *
53375 CGTCTT-GCAGGAAAGGC-TT-TTCCCATTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
387 GGT-TTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGACAAAGTTCGTGCCTCAAATGA
* **
53437 GACAAACAAGGATTCTAGTAGGGA
451 GACAAACATGGATTCTAGTAATGA
* * * *
53461 TCTTCATTCATTTTGTG-TTCAGGCACTA-AAACCACATTCTCCTCTTTAGTATAAATGATGTTG
1 TCTTCATTCATTTTGTGATT-AGGCACTATAAA-CACATTCTCATCCTTAGGATAAATGATATTG
* * * * *
53524 ATGATTTACTTTTCCATGAAAATC-TTT-TTTCCCCTATTTTCCTTAAAATCAAAATTCATCCCT
64 ATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * * * *
53587 TAAATGAGACAAGAATCGATTCTCGTAATAGTCTCTGATCTTTTCAAGATTAGAAACCAAAAACA
129 TAAATAAGACAAGCATCGATTCTCATAACAGTCTC-CATCTTTTCAAGATTGGGAACCAAAAACA
* * * * * *
53652 CATTCCCTTCATTAGCATACACGGCATAGGTGCTTTGGTGTCGTAAGAAAAGGTTTTTTTTCACC
193 CATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCACC
* * * *
53717 GTTTTTGATAAAATCAAAGTTTATCTCTTAAACAAGACAAACATGAATAGTCATACTAAACCCTA
258 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAACCCCA
*
53782 TTCTTTTCAGGATTAGGCACCAGAAACATAGTCTTCTCTTTAGGATAGACAATATTGATGCATTG
323 TTCTTTTCAGGATTAGGCACCAGAAACATAGTCTTCTCATTAGGATAGACAATATTGATGCATTG
* * ** * *
53847 GTTTCACAGGAAAGGCTTTCTTCCCACCAATTTTTATAAAGAGAAAGTTTATGCCACAAATGATA
388 GTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGACAAAGTTCGTGCCTCAAATGAGA
* *
53912 CAAACATCGATTCCAGTAATGA
453 CAAACATGGATTCTAGTAATGA
* *
53934 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATT-TCTATCCTTAGGATAAAAGATTTTGA
1 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC-ATCCTTAGGATAAATGATATTGA
* * * *
53998 TGGTTTT-TTTTGCTTGAAAATCTTTTCTTTGCCGTATTTTCCTTAAAATCGAAGTTAATCCCTT
65 TGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * *
54062 AAATAAGACAAACATCAATTCTCATAACATTGTCCACTCTTTTCAAGATTGGGAACCAAGAACAC
130 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCA-TCTTTTCAAGATTGGGAACCAAAAACAC
* ** * *
54127 ATTCCCTTCATTAGGATATATGATATTGATGCTTTGGTG-CAGCAAGAAAAGGTTTGCTTTCACT
194 ATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC-GCAAGAAAAGGTTTTCTTTCACC
* ** * * * * *
54191 GTTTTTGATAGATTCAAAGAGTATCTCTCAAATAAGACAAA-ATAAATAGTCATACTAATCCTCA
258 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAACCCCA
* * * * * * * * * *
54255 TTCTTTTTACG-TTCAGGTACCACAAACATAGTCTTTTCGTTAGGATAGACGATATCGATCCTTT
323 TTCTTTTCAGGATT-AGGCACCAGAAACATAGTCTTCTCATTAGGATAGACAATATTGATGCATT
* ** *
54319 GGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTT-GGAAGACATAAGTTCGTACCTC-AAT-A
387 GGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGACA-AAGTTCGTGCCTCAAATGA
* *
54381 GGACAAACATTGATTCTAATAATGA
451 -GACAAACATGGATTCTAGTAATGA
* * * **
54406 TCTTCATTCATTTTGTAATTAGGCACTATAATCA-ATTCTCCTTGTTAGGATAAATGATATTGAT
1 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCATCCTTAGGATAAATGATATTGAT
54470 GGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
66 GGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
** * * *
54535 AATAAGGTAAGCATTGATTCTAATAACAATCTCCATCCTTTTCAAGATTGGGAACCAAAAACACA
131 AATAAGACAAGCATCGATTCTCATAACAGTCTCCAT-CTTTTCAAGATTGGGAACCAAAAACACA
* * *
54600 TTCCCTTCATTAAGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTGCCACCA
195 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTT-TCACCG
* * * * *
54665 TTTTTTATAGAATCAAAGTTTGTTTCTTAAATAAGATAAACAAGAATAGTCATACTAATCCCCAT
259 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAACCCCAT
* * * * **
54730 TCTTTTTC-GGATTAGGCACTAGAAACATAGTCTTCTCCTTAGGATGGACAATATTTATATATTG
324 TC-TTTTCAGGATTAGGCACCAGAAACATAGTCTTCTCATTAGGATAGACAATATTGATGCATTG
* *
54794 GTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATCAAGAGAAAGTTCGTGCCTCAAATGAGA
388 GTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGACAAAGTTCGTGCCTCAAATGAGA
*
54859 CAAACATGGATTGTAGTAATGA
453 CAAACATGGATTCTAGTAATGA
* * *
54881 TCTTCATTCA-TTT-TG--T--G-ACTATAAACACATTCTCCTCCTTAGGATAAAAGATTTTGAT
1 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCATCCTTAGGATAAATGATATTGAT
* * * *
54939 GGTTTTCTTTTGCTTG-AAAT-TTTT-TTAT--CGTATTTTCCTTAAAATCGAAGTTAATCCCTT
66 GGTTTTCTTTTGCATGAAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * ** * *
54999 AAATAAGACAAGCATTGATTCTCGTAATTGTCTCCAATCTTTTCAA-ATTTAGAAACCAAAAACA
130 AAATAAGACAAGCATCGATTCTCATAACAGTCTCC-ATCTTTTCAAGA-TTGGGAACCAAAAACA
* * * * * *
55063 CCTTCCCTTCATTAGGATACACGGCATTGATACTTTGCTGTCGCAAGCAAATGTTTTCTTTCCAC
193 CATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTT-CAC
*
55128 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAACAAGAC-AACATGAATAGTCATA
257 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA
55183 TGATGACAAC
Statistics
Matches: 1453, Mismatches: 235, Indels: 78
0.82 0.13 0.04
Matches are distributed among these distances:
464 16 0.01
465 169 0.12
466 4 0.00
467 5 0.00
468 13 0.01
469 42 0.03
470 2 0.00
471 161 0.11
472 369 0.25
473 269 0.19
474 357 0.25
475 45 0.03
476 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCATCCTTAGGATAAATGATATTGAT
GGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
AATAAGACAAGCATCGATTCTCATAACAGTCTCCATCTTTTCAAGATTGGGAACCAAAAACACAT
TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCACCGTT
TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAACCCCATTC
TTTTCAGGATTAGGCACCAGAAACATAGTCTTCTCATTAGGATAGACAATATTGATGCATTGGTT
TCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGACAAAGTTCGTGCCTCAAATGAGACAA
ACATGGATTCTAGTAATGA
Found at i:60211 original size:42 final size:42
Alignment explanation
Indices: 60143--60274 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
60133 TCACTCTTCC
* * *
60143 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCTCCTCTCTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCCTCTCTCTACT
* *
60185 ATCTCTCTTGTCTCTCCTCTTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
* *
60227 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTCT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
*
60269 TTCTCT
1 ATCTCT
60275 TTGAGGGCTA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 72 0.91
43 7 0.09
ACGTcount: A:0.08, C:0.44, G:0.02, T:0.45
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
Found at i:65509 original size:475 final size:476
Alignment explanation
Indices: 61889--72334 Score: 10888
Period size: 475 Copynumber: 22.2 Consensus size: 476
61879 TTTTCATCAC
* * * * * *
61889 CATACTAAACCCCATTCTTTTTCGGATTAGGCACCAGAAACATAGTCTTCTCCTTAGGATAGACA
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * * *
61954 ATATTGGTGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGAGAAAGTTCA
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
*
62019 TGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
62084 AAACACATT-T-TTCTCCTTAGGATAAAAGAT-TTCGATGGTTCTCTTTTGCTTGAAAATCTTTT
196 AAACACATTCTCTTCT--TTAGGATAAATGATATT-GATGGTTTTCTTTTGCATGAAAATCTTTT
** * * * * * * *
62146 CTTTATCGTATTTTCCCTAAAATCGAAGTTAATCCCATAAATAAAACAAGCATCAATTCTCGTAA
258 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* ** * * * * *
62211 CACTGACCACTCTTTTCGAGATTGGGAACCAAGAACGCATTCCCTTCATTAGGATACATGACACT
323 CAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * *
62276 GATGCTTTGGTGTAGCAAAAAAAGGTTTTCTTTCCACCATTTTTGATAGATTCAAA-TATTGTCT
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT-TTGTCT
* *
62340 CTCAAATGAGACAAA-ATGAATAGT
452 CTTAAATAAGACAAACATGAATAGT
* * * * * *
62364 TATACTAAT-CCTCATTCTTTTTACGTTTAGACACCATAAGCATAGTCTTTTCATTAGGATAGAC
1 CATACTAATCCCT-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* * * ** * * * *
62428 AATATCGATCCTTCAGTTTCGCAAGAAAGGCTTT-TTCCTACCAATTTTTGTAGAGTATAAGTAC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * *
62492 GTGCCTC-AATGAGACAAACATGGATTCCAATACTGATCTTTATTCATTTTGTGATTAGGTACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * *
62556 TAATCACATTCTCCTCGTTAGGATAAATGA-ATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* ** *
62620 TTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGGTAAGCATTGATTCTCGTAACA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC-
* * *
62685 AG-CTCCAATCTTTTCAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACGTGACATTG
324 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
62749 ATGCTTTGGTGTCGTAAGAAAAGCTTTT-TATTCCATCATTTTTGATAGAA-CAAAGTTTGTCTG
389 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
* * *
62812 TTAAGTAAGACAGACATGAATACT
453 TTAAATAAGACAAACATGAATAGT
* * * * * *
62836 CATACTAA-CCCCAATCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTGGGATAGACA
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * *
62900 ATATTGATGCATTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTGAAAGTTCG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
*
62965 TGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
63030 AAACACATTCTTTTCCTTAGGATAAAAGATTTTAATGGTTTTCTTTTGCTTAAAAATCTTTTCTT
196 AAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
* * * * * * ** *
63095 TGCCATATTTTCCTTTAAATCGAAGTTAATCCCTTAAATAAGATAAGCATCAATTCTTATAACAC
261 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * * ** *
63160 TATCCACTCTTTTCAAGATTGGGAACTAGGAACACATTCCCTTCATTAGGATGCATGACATTGAT
326 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * *
63225 GCTTTAGTGTTGCAAGAAAAGGTTTTCTTTTCACCGTTTTTGATAGAATCAATGATTGTCTCTTA
391 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
63290 AATAAGACAAA-ATGAATAGT
456 AATAAGACAAACATGAATAGT
* * ** * *
63310 CATACTTAT-TCTCATTCTTTTTATCATTAGGCACCATAAACATAGTCTTTTCACTAGGATAGAC
1 CATACTAATCCCT-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* *
63374 GATATCGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT-CAAAGTGTAAGTTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * *
63438 ATGCCT-TAATGAGACAAACATGGCTTTCT-GTAATGATCTTCATTCATATTGGGATTAGGCACT
130 GTGCCTCAAATGAGACAAACATGG-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
** * *
63501 ATATTCACATTCTCCTCGTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTC
194 ATAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTC
* * *
63566 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAAC
259 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * *
63631 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAACCACAGTCTCTTCATTATGATACATGACATTG
324 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * *
63696 ATGCTTTGGTGTCGCAAGAAAAGTTTTTCATTCCACCATTTTTCATAGAA-CAAAATTTGTCTC-
389 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
*** *
63759 TAAAGTAAGATGGACATGAATACT
454 TAAA-TAAGACAAACATGAATAGT
* * *
63783 CATACTAATTCCTAATCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
1 CATACTAATCCCTATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* * ** * *
63847 AATATTGATGCATTGGTTTCGCAAG-AAGGACTTTCTTCCCAGTAATTTTTATAAAGTGAAAGTT
65 GATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTT
63911 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* *
63976 ATAAACACATTCT-TCTCTTTAGGATAAATGATATTGATGATTTT-TTTTGTATGGAAAA-CTTT
194 ATAAACACATTCTCT-TCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCAT-GAAAATCTTT
* * * * * *
64038 TCTTTGCCCTATTTTCCTGAAATTCAAAGTTCATCCCTTAAATAAGGCAAGCTTTGATTCTCGGA
257 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* ** *
64103 ACAGTCTCAATTCTTTTCAAGATTGGGAACTTAAAACACATTCCCTTTATTAGGATACATGACAT
322 ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * *
64168 TGATGCCTTGGTGT--C---ATAA--TATT-TTT-CA-TAGTTATTAATAGAATCAAAGTTTCTC
387 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTC
*
64223 TCTTAAATAAGACAAATATGAATCA-T
451 TCTTAAATAAGACAAACATGAAT-AGT
* * * * * * *
64249 TAGACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * *
64314 ATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACCAATTTTTTTAAACTGTAAGTTCG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
* * * * * * * *
64379 GGCTTCAAAAGACACAAACATGTATTCTAGTAATTATCTTCATTTATTTTGGGATTAGGCACTAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
64444 AAACACATTCT-TCTCATTAGGATAAAAGATTTTGATGGTTTTCTTTTGCTTGAAAATCTTTTCT
196 AAACACATTCTCT-TCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
** * * * * *
64508 TTGCTGTATTTTCCTTAAAATCGAGGTTAATCCCTTAAAAAAGACAAGCATCAATTCTCGTAACA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * * *
64573 CTGTCCACTCTTTTCAAGATTAGGAACCAAGAACACATTCCTTTCATTAGGATACAAGACATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
64638 TGCTTTGGTGTTGCAAGAAATGGTTTTCTTTCCACCGTTTTT-ACTAGAATCAAAGATTGTCTCT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA-TAGAATCAAAGTTTGTCTCT
** *
64702 TAAATAAGTTAAA-ACGAATAGT
454 TAAATAAGACAAACATGAATAGT
* * * * *
64724 CATACCAAT-CCTCAGTCCTTTTACGG-TCAGGCACCATAAACATAGTCTTTTCATTAGGATAGA
1 CATACTAATCCCT-ATTCTTTTTA-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGA
* ** * * *
64787 CGATATCGATGCTTTCATTTTGCAAGAAAGGCTTTTTTTCCCCACCAATTTTTGTATAGTGTAAG
64 CGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTT-CCCACCAATTTTTGTAAAGTGTAAG
* * *
64852 TTTGTGCCTC-AATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGCGATTAGGCA
127 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * *
64916 CTATAATCACATTCTCATT-GTTAGGATAAATGATATTGATGGTTTTCTTTTGCATTAAAATCTT
192 CTATAAACACATTCTC-TTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* ** * * * *
64980 TTCTTTGCCTTACATTCCTTAAAATCAAAGTTCATACCTTAAATAAGCCAAGCATTGATTCTTGT
256 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
* * * * *
65045 AATAATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACATGTCA
321 AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * *
65110 TTGATGCTTTGTTATCGTAAGAAAAGCTTTTCATTCCACCATTTTTGATAGAA-CAAAGTTTGTA
386 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
* * *
65174 TCTTAAATAAGACAGACACGAATACT
451 TCTTAAATAAGACAAACATGAATAGT
* * * * * *
65200 CATACTAATCTCTAATATTTTTAGGATTAGGCACCATAAACACAGTCTTCTCATTAGGATACATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * *
65265 ATATTGATGCATTGGTTTCGCAAGAAAGGGTTT-TTCCCCACCAATTTTTGTAAAGTCTAAGTTA
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * * * * *
65329 ATTCCTGAAATGAGATAAACATGGATTCTAGTTAGGATCTTCATTCATTTTTTTATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * ** *
65394 GAAACATATTCTCTTCTTTAGTATAAATGATATTGATCATTTTCTTTTGCATGAGAATCTTTTCT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * *
65459 TTGCCTTATTTTCCTTATAATCAAAATTCATCCCTTAGATAAGACAAGCATCGATTCTCGTAATA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
** * *
65524 GTCTCCATTCTTTTCAAGATTGTAAACCAAAAACACATT-CCTATCATAAGGATACATGACATAG
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT-TCATTAGGATACATGACATTG
* * * * * * * *
65588 ATGCTTTGCTGTGGCATGAAAAACTTTTTTTTCCACCGTTTTTAATAGAATCAAAGTTTGTATCT
389 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* *
65653 TAAAAAAGACAAAGATGAATAGT
454 TAAATAAGACAAACATGAATAGT
* * * * *
65676 CATACTAATCCCCAATCTTTTTAGGATTAGGCACCATAAACATAGCCTTCTCATGAGGATACACG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * *** * * * *
65741 ATATTGATGCTTTGGTTTTGCAAGAGAGGCTTTTTTCCTTGCAATTTTTGTAGAGTCTATGTTCT
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
* * * * *
65806 TGCCAT-AATTGAGACTAACATGGATTCTAGTAACGATCTTCACTCATTTTGTGACTAGGCACTA
131 TGCC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * *
65870 TAAACACATTCGTC-TATTTAGGGTAAATGATATTGATGATTTT-TTTTGGTATAAAAAACTTTT
195 TAAACACATTC-TCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTT-GCATGAAAATCTTTT
** * * * * * *
65933 CTTTGCCCTATCCTCCTTTAAATTAAAGTTCATCCCTTAACTAAGGA-AAACATTGATTCTCGGA
258 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-GACAAGCATCGATTCTCGTA
* * ** *
65997 ACAGTCTCCATTTTTTTGAAGATTGGGAATAAAAAACACATT-CCTTCATTAGGATATATGACAT
322 ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * *
66061 TGATACTTTGGGGTCCCAAGAAAAGCTTTTCTTTCCA-TAGTTATTAATAGAATCATAGTTTGTC
387 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTC
66125 TCTTAAATAAGACAAACATGAATCA-T
451 TCTTAAATAAGACAAACATGAAT-AGT
* * * * * *
66151 TACACTAATCCCCATT-TTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAT
1 CATACTAATCCCTATTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* * * * * *
66215 GATATTGATGCTTTGGTTT-ACAAGAAAGGCATTCTTTCCGCCAATTTTT-CAAACTGTAAGTTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * *
66278 GGGCCTCAAAAGAGACATACATGTATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * *
66343 TAAACACATT-T-TTCTCATCAAGATAAAAGATTTTGATTGTTTTCTTTTGCTTGAAAATCTTTT
195 TAAACACATTCTCTTCT--TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTT
** * * * * *
66406 CTTTGCTGTATTTTCCTTAAAATCGAAGTTAATCCCTTAAATAAGACAGGCATCAATTCTCATAA
258 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * ** * * * *
66471 CACTGTCCACTCTTTTGTAGATTGAGAACCAAGAACACATTCCCTTCATTAGGATACAAGATATT
323 CAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * *
66536 GATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCTACCATTTTTGATAGAATCAAAGATTGTCTC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
66601 TTAAATAAGACAAA-ATGAATAGT
453 TTAAATAAGACAAACATGAATAGT
* * * *
66624 CATACCAAT-CCTCATTCTTTTTACGATTAGGCACCACAAACATAGTCTTTTCATTAGGATAGAC
1 CATACTAATCCCT-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* * * *
66688 GATATCGATGCTTTGGTTTCGTAAGAAAGGATTTCTTCCTACCAATTTTTGTAAAGTGTAAGTTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* *
66753 GTGCCTC-AATGAGACAAACATAGATTCTAGTAATGATCTTCATACATTTTGTGATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * *
66817 TAATCACATTCTCCTCGTTAGGATAAATGATATTGATGGTTTTCTTTTGCATTAAAATCTTTTCT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * *
66882 TCGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATTGATTCTCGTAACA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
66947 GTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGGCATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* ** *
67012 TGATTTGGTGTTACAAGAAAAGCTTTTCATTCCACCATTTTTGATAGAA-CAAAGTTTGTCTCTT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* *
67076 AAATAAGACACACATGAATACT
455 AAATAAGACAAACATGAATAGT
* * * * * * * * *
67098 TATACTAATCCCTAGTCGTTTCAAGATTAGGCACCCTAAACATAGTCTGCTCATTAGGATACATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * **
67163 ATATTGATGCATTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAATATAAGTTAA
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
* * * * * * * *
67228 TGCCTTAATTGAGACAAACATAGATTCCAGTAAAGATCTTCATTCATTTTGGGATTAGGCACGAG
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
** ** **
67293 AAACACATTCT-TCTCTTTAATATAAATGATATTGATTATTTTCTTTTGCATGGGAATCTTTTCT
196 AAACACATTCTCT-TCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * * * * *
67357 TTGCCCTATTTGCCTCAAAATCAAAATTCATCCATTATATAAGACAAGCATCGATTATCATAATA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * ** *
67422 GTCTCCATTATTTTTAATATTGGAAACCTAAAATGCATTCCCATCATTAGGATACATGACATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
** * * *
67487 TGCTTTGGCAT-GCAAGAAATGCTTTTCTTTTCACCATTTTTAATAGAATCAAAGTTTGTCTCTT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
*
67551 AAATAAGAAAAACATGAATAGT
455 AAATAAGACAAACATGAATAGT
* * * * *** * ** * *
67573 CACACTAATCCCCATTCTTTTCAAGATTAGTTGCTATAAACATAGTCTTCTCATGCGGATACATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * * * *
67638 ATACTGATGCTTTGGTTTTGCAAGAGAGGCTTTTTTCCC-CGTAATTTTTGTAGAGTCTATGTTC
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC-CAATTTTTGTAAAGTGTAAGTTC
* *
67702 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * **
67767 TAAACACATTCT-TCTCTTTAGGATAAATGGTATTGATGATTTTCTTCTATATGGAAAA-CTTTT
195 TAAACACATTCTCT-TCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCAT-GAAAATCTTTT
* * * * * * *
67830 CTTTGCCTTATTTTCCTTAAATTCAAAGTTCCTCCTTTAAATAAGGCAAGCATTGATTCTCGGAA
258 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
*
67895 CAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGAAATT
323 CAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* ** * * * * * * *
67959 GTTGCTTTGGTGTCATAGGAAAAGCTTTAT-TTTCCA-TAGTTGTTAATAGAATTAAATTTTTTC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTT-TCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTC
68022 TCTTAAATAAGACAAACATGAATCA-T
451 TCTTAAATAAGACAAACATGAAT-AGT
* * ** * * *
68048 CATACTAATCCCTATTCTTTTCAAGATTAGGCACTGTAAACATAGTCTTCTTATTAGGATACATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * *
68113 ATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTTCTACCAATTTTTTTAAACTGTAAGTTCG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
** ** *
68178 AACCTCAAATGAGACAAACATATATTCTAGTAATGATCATT-ATTCATTTTATGATTAGGCACTA
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TTCATTCATTTTGTGATTAGGCACTA
*
68242 TAAACACATTCT-TCTCTTTAGGATAAATGA-ATTTGATGGTTTTCTTTTGCTTGAAAATCTTTT
195 TAAACACATTCTCT-TCTTTAGGATAAATGATA-TTGATGGTTTTCTTTTGCATGAAAATCTTTT
* * * * * * * * *
68305 CTTTTCTCTACTTTCCCTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTTGAAA
258 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * * *
68370 TAGTC-CCTAAAATCTTTTC----TT-TG-----------C--T--CTACTTTAGGATACATG-C
323 CAGTCTCC---ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* ** **
68413 ATTGATGCATTGGTGTATCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCAT
385 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * *
68478 C-CCTAAAAAAGACAAACATGAATTGT
450 CTCTTAAATAAGACAAACATGAATAGT
* * * *
68504 CTTACTAATCCCCT-TTCTTTTTAGGATTAGGCACCATAAATATAGTCTTCTTATTAGGATAGAT
1 CATACTAAT-CCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* *** * * ** * *
68568 GATACTGACATTTTGGTTT-GCAAGAAAGGCTTTCTTTCCACCAATTTTGGTGTAGTATAAGCTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * * * *
68632 ATGCCTGAAATTAGACAAACATGGTTTCTAGTAATGATCTTTATTTATTTTGTGATTAGGCACGA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* ** * * * * ** *
68697 TAAACACATTCTCCTAATCAGGATAAATGACATTGATGATTTTCATTTATATGGAAATCTTTTCT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * * ** *
68762 TTGCCTTATTTTTCTTAAAATTAAAATTCATCCCTTAAATAAAACAAGCATCGATTCTCACAATA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * ** ** *
68827 GTCTCCACTCTTTTCAAGATTTGGATTCAAAAATGCATTCCCTTCATTAGGATACATGGCATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * * **
68892 TGCTTTAGTATCGGAAGAAAAGGTTTTCTTTCCACCATTTTGGATAGAATCAAAGTTCGTCCCGC
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
*
68957 AAA-AGAGACAAACATGAATTGT
455 AAATA-AGACAAACATGAATAGT
** * ** ** *
68979 CGCACTAATCCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTTGTTAGGATAGACA
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* ** ** ** *
69044 ATATTGATGCTTTTGTTTCTTAAGAAAGG-TTTGCTTCTTAATAATTTTTATAAAGTGTAAGTTC
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-CTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * * * *
69108 GTGCTTCAAATCAGCCAAGCATGGATTCTAGCAATGATCTTTACTCATTTTGTGATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * *
69173 TAAACACATTCTTTTCATTAGGACAAATGATATTGATGATTTTCTTTTGTATGAGAATCTTTTCT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * * *
69238 TTGCCCTATTTTTCTTAAAATTAAAATTCAACCCTTAAATAAGACAAGCATCGATTCTCGCAATA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * *
69303 GTCTCCACTCTTTTCTAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
** * * * * * * *
69368 TGCTTTGGTGTTACAAGAAAAGGTTTTCCTTCCACCGTTTTGGATAAAATCAAAGTTTGACTCCT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
69433 AAATAAGACAAAC-T---TAG-
455 AAATAAGACAAACATGAATAGT
* * * ** *
69450 GATAC-ATTCCC--TTCTTTTTAGGATTTGGCACTGTAAACATAGTCTTCTCATTAGGATTGACG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * *
69512 AAATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACTAATTTTTGT-AACTCTAAGTTCG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
* * *
69576 TGCCTGAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
69641 AAACACATTCTCCTCGTTAGGATAAATGATACTGATTGTTTTCTTTTGCATGGAAATCTTTTCTT
196 AAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
* * * ** *
69706 TGCCTTATTTTCCTTAAAATGAAAGTTCAT-CCTATAAATAAGACAAGTATTAATTCTCGTGACA
261 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT-TAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * *
69770 GTCTTCATTCTTTTCCAA-ATTGGAAACCAAAAACACATT-CCTCCATTAGCATACAAGACTTTG
325 GTCTCCATTCTTTT-CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * * * * * * * *
69833 TTGGTTTGGCGTTGTAAAAAAAGCTTTTCCTTCCATCGTTTTTGATAAAATCAAAGTTTGTCTTT
389 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
*
69898 TAAATAAGACAAACATAAATAGT
454 TAAATAAGACAAACATGAATAGT
* * * * *
69921 CATACTAATCCC-ATTCTTTTCAAGATTAGGCACCATAATCATAGTCTTCTCATAAGGATAGAAG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* ** * ** * *
69985 ATATTAATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCAGTAATTTTTGTAAACTCTAAGTTCG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
* * *
70050 CGCCTGACAA-GAGACAAACATGGATTTTAGTAAT-ATCTTCATTCATTTTGTGATTAGGCACTA
131 TGCCTCA-AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * ** * *
70113 TAAACACATTCTCCTCATTAGGATAAATGATACTGATTATTTTTTTTTGCATTG-AAATCTTTTT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCA-TGAAAATCTTTTC
* * * *
70177 TTTG-CCTCATTTTCCTTAAAATTAAAATTAATCTCTTAAATAAGACAAGCATCGATTCTCGTAA
259 TTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* *
70241 CAGTCTCCAATCTTTTCAAGATTGGGAACCAAAAACACA-TCCCTTCATTAGGATACATGATATT
323 CAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* ** * * * *
70305 GATGCATTAATGTCGCAAGAAAAACTTTTCTTTCCACC-GTTTTGATTA-AATCAAAGTTCGTCC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA-TAGAATCAAAGTTTGTCT
*
70368 CTCAAA-AGAGACAAACATGAATTA-T
452 CTTAAATA-AGACAAACATGAA-TAGT
* * * * *
70393 CTTACTAATCCCTATTCTTTTTTGGATTAGGCACCATAAACATAGTTTTTTCATTAGG-TAGATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * *
70457 ATACTAACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGTTC-
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
** * * *
70521 CACCTCAAATGAGACAAACATGGA-TCTAGTAAGGATCTTCATTCATTTTGTGATCAGGCACTAG
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
70585 AAACACATTCTCCTT-TTTAGTATAAATGATATTGATGATTTTCTTTTACATGAAAATCTTTT-T
196 AAACACATTCT-CTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * *
70648 TTCCCCTATTTTCCTTAAAATCAAAATCCATCCCTTAATTAAGACAAGCATCGATTCTCATAACA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * ** * *
70713 GTATCCAATCTTTTTAAGATTGAAAACCAAAAACACATTCCCTTTACTAGGATACATGACATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * *** * *
70778 TGCATTGGTGTCACAAGAAAAGCTTTT-TTTCCACCGTTTTTTATTGAATCAAAGTTCACCCCTG
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
*
70842 AAA-AGAGACAAACATGAATTGT
455 AAATA-AGACAAACATGAATAGT
* * * * *
70864 CTTACTAATCCCCATTATTTTTAGGATTAGGCACCATATACATACTCTTCTCATTAGGATAGAC-
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * * * *
70928 ATTACTAACGCTTTGGTTTTGCAAGAAAGGCTTTTTTTCCCATCAATTTTTGTAAAATCTAAGTT
66 A-TATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTGTAAGTT
* *
70993 CATGCCTCAAATGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT-ACTTAGGCAC
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAGGCAC
* * *
71057 TATAAACACATTCT-TCTCCTTAGGATAAAAGAGT-TTGATGGTTTTCTTTTGCTTGAAAATCTT
193 TATAAACACATTCTCT-TCTTTAGGATAAATGA-TATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * * * *
71120 TT-TATTGTCGTATTTTCCTTAAAATCGAAGTTAATCTCC-TAAATATGACAAGCATCAATTCTC
256 TTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTC
* * * * * * * * * * *
71183 GTACCACTATCCACTCATTTCAAGAATGGGAATCAAGAACACATTCCCTTCATTAAGATATAAGA
319 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* * * * *
71248 CATTAATGCTTTGGTGTCACAAGAAAAACTTTTCTTTCCA-CGTTTTTGATAGAATCAAAGATTG
384 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* *
71312 TCCCTTAAATTAGACAAA-ATGAATAGT
449 TCTCTTAAATAAGACAAACATGAATAGT
* * * *
71339 CATACCAAT-CCTCATTCTTTTTATGATTAGGCACCATAAACATAGTCTTTTCATTAGGATAAAC
1 CATACTAATCCCT-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
* * * * * * *
71403 GATATCGATGCTTTGGTTTCGCAAGAAAAGCTTTCCTCCCCCCAAATTTTGTAAAGTGCAAGTTT
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
*
71468 GTGCCTC-AATGAGAC--A-A---A---TA-T-A--ATC-ACATTCATTTTGTGATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * *
71518 TAATCACATTCTCCTCGTTAGGATAAATGATATTGATGGTTTCCTTTTGCATGAAAATCTTTTCT
195 TAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * *
71583 TTGCCCTACTTTCTTTAAAATCAAAGTTCATGCCTTAAATAAGGCAAGCATTGATTCTCGTAACA
260 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * **
71648 GTCTCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCCTCATTAGGATAGTTGACATTGA
325 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* ** *
71713 TGCTTTGGTGTCACAAGAAAAGCTTTT-TATTCCAAAATTTTTGATAGAA-CAAAGTTTGTCACT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
71776 TAAATAAGATAGACATGAATACT
454 TAAATAAGACAAACATGAATAGT
* * * * * *
71799 CATAGTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATG
1 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
* * * *
71864 AGATTGATGCATTGGTTTCGCAAGAAAGGCATTT-TTCCTACCAATTTTTGTAAAGTCTAAGTTC
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTC
* * * * * * * * * * *
71928 ATGTCTCACAT-ATGACAAACATAGATTCTAGTAAGGATTTTCATCCATTCTATGATTAGGCTCG
130 GTGCCTCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * * * **
71992 AGAAACACATTCTC--CTCTA-G--AAA-CACATTCA--------TTTTGCATGGGAATCTTTTC
194 ATAAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTC
* * * *
72043 TTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCGTAAATAAGACAAACATCGATTCTCGTAAC
259 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * ** *
72108 AGTCTCTATTGTTTTCAAGATTGGAAATCAAAAACACATTCCAATCATTAGGATACATGACATAG
324 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * ** *
72173 ATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCTACCATTTTAAATAGAATCAAAGTTCGTCTCT
389 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
72238 TAAATAAGACAAACATGAATAGT
454 TAAATAAGACAAACATGAATAGT
* * * *
72261 CATACTAAT-CCTCATTCTTTTCAGGATTAGGCACCCTAAACATAGTCTTCTCATGAGGATACAC
1 CATACTAATCCCT-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAC
72325 GATATTGATG
65 GATATTGATG
72335 TTCGTGCCTC
Statistics
Matches: 8318, Mismatches: 1441, Indels: 437
0.82 0.14 0.04
Matches are distributed among these distances:
453 8 0.00
454 2 0.00
455 192 0.02
456 92 0.01
457 55 0.01
458 21 0.00
459 230 0.03
460 134 0.02
461 182 0.02
462 99 0.01
463 2 0.00
464 4 0.00
465 12 0.00
466 322 0.04
467 346 0.04
468 83 0.01
469 13 0.00
470 123 0.01
471 346 0.04
472 409 0.05
473 1187 0.14
474 1224 0.15
475 1984 0.24
476 1191 0.14
477 56 0.01
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACG
ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCG
TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
AAACACATTCTCTTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAAACATGAATAGT
Found at i:73071 original size:158 final size:157
Alignment explanation
Indices: 72427--74929 Score: 505
Period size: 159 Copynumber: 15.9 Consensus size: 157
72417 TCTCTAAGAT
* * *
72427 AAATAAGACAAACATGAATTGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACAT
1 AAATGAGACAAACATGAA-TCTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACAC
* *
72492 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAGGGC-TTTCTTTCCACT
65 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCACC
* * * **
72556 AATTTTT-ATACTGTAAGATCGGGCCTC
130 AATTTTTAAAAATATAAGATTAGGCCTC
* * * * * ** ** *
72583 AAATGAGACAAATATGGATTCTAATAATGATCTTCATTCATTTT-GGGATTAGGCACTATAAACA
1 AAATGAGACAAACAT-GAATCTCATACTAATCCCCATT-ATTTTCAAGATTAGGCACCATAAACA
* * * * ** * * * *
72647 CATTCTTCTC-TCTAGGATAAACGATATTGATGATTTTCTTTTGTATGGAAA-ACTTTTCTTTAC
64 CAGTCTTCTCAT-TAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTCTTTCC
* * * * ** *
72710 -CCTATTTTCCTTAAAAT-CAAGGTTCATCCCTT
127 ACCAATTTT--TAAAAATATAAGATT-AGGCCTC
* * * * * * * * * * * *
72742 AAATAAGGCAAGCATTGATTCTCAGAAC-AGTCTCCTTTGTTTTCAAGATTGGGAACCAAAAACA
1 AAATGAGACAAACA-TGAATCTCA-TACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* * * * * ** *
72806 CATTCCTT-TCATTAAGATACAAGACATTGATGCTTTGGTGTCCCAAGAAAAGCTTTTCTTTCCA
64 CAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCA
* * * * * *
72870 --AGTTATTGATAGAATCA-AAG-TTTGTCTCTT
128 CCAATT-TTTA-AAAAT-ATAAGATTAGGC-CTC
*
72900 AAAT-ATGGCAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
1 AAATGA-GACAAACATGAATC-TCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* *
72964 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGC-TTTCTTTCCAC
64 CAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCAC
73028 CAATTTTTAAAAACTATAAGATTAGGCCTC
129 CAATTTTTAAAAA-TATAAGATTAGGCCTC
* * * * * ** ** *
73058 GAATGAGATAAACATGTAT-TCTAGTAATGATCTTCATTTATTTT-GTGATTAGGCACTATAAAC
1 AAATGAGACAAACATGAATCTC-A-TACTAATCCCCA-TTATTTTCAAGATTAGGCACCATAAAC
* * * * * * ** ** *
73121 ACATTCTTTTCATTAGGATAAATGATTTTGATGGTTTTGTTTTGCTTGAAAATCTTTTCTTTGC-
63 ACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCA
* * * **
73185 CCTATTTTCCTTAAACTCA-AAG-TTCATCCCTC
128 CCAATTTT--TAAAAAT-ATAAGATT-AGGCCTC
* * * * * * * * * * * *
73217 AAAT-AAAGTAAGCATTGATTCTCAGAAC-AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAT
1 AAATGAGA-CAAACA-TGAATCTCA-TACTAATCCCCATTATTTTCAAGATTAGGCACCATAAAC
* * * * * * ** * *
73280 ACATTCCTT-T-TTTAGGATACATGATATTAATGCCTTGCTGTCCCATGAGAA-GCTTTTCTTTT
63 ACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AAGGCTTTTCTTTC
* * *
73342 CACC-ATTTTTGATAGAATCA-AAG-TTCGTCCCTC
126 CACCAATTTTT-A-AAAAT-ATAAGATTAG-GCCTC
* * * * ** *
73375 AAATGGGACAAACATGAATCACCATGCTAATCCCCA-T-TCTT-----TTAGGCATTATAAACAT
1 AAATGAGACAAACATGAATC-TCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACAC
* * *
73433 ATTCTTCTCATTAGGATACATGATATTGATGCTTTGATTTTGCAAGAAAGGC-TTTCTTTCTACC
65 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCACC
* * * * *
73497 AATTTTTATAAATTGTAAGTTTGGGCCTT
130 AATTTTTA-AAAATATAAGATTAGGCCTC
* * * * *** ** * * *
73526 AAATGAGATAAACATGTAT-TCTAGTAATGATCTTAATTCATTTT-GTGATTAAGCACTAGAAAC
1 AAATGAGACAAACATGAATCTC-A-TACTAATCCCCATT-ATTTTCAAGATTAGGCACCATAAAC
* * * ** * ** ** **
73589 ACATTCTTCTCATTAGGATAAATGATTTTGATG-TTTTCTTTTACTTGAAAATCTTTTCTTT-GT
63 ACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCA
** * ** *
73652 CGTATTTTCCTTAAAATCA-AAG-TTCATCCCTT
128 CCAATTTT--TAAAAAT-ATAAGATT-AGGCCTC
* * * * * * * *
73684 AAAT-ACGACAAGCATTGATTCTCGA-AATAATCTCCATTCTTTTCAGGATTGGGAACCA-AAAG
1 AAATGA-GACAAACA-TGAATCTC-ATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAA-
* ** * * * * *
73746 CACATTCCTT-TCATTAGGATACAAAACATTGATGTTTTGG-TGTCCTAAGAAAAGCTTTTCTTT
62 CACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGC-AAGAAAGGCTTTTCTTT
* ** * * **
73809 CTA-CTGTTTTTGATAGAATCA-AAGTTTATTCCTC
125 CCACCAATTTTT-A-AAAAT-ATAAGATTAGGCCTC
* * ** * * *
73843 AAAAGAGACAAACATGAATTGTTGTACTAATCCCTATT-TTTTCCAAGATTAGGCACCATAAGCG
1 AAATGAGACAAACATGAA-TCTCATACTAATCCCCATTATTTT-CAAGATTAGGCACCATAAACA
* ** * * ** * * * *
73907 TAGTCTTCTTGTTATGATAGACAATATTGATGCTTTTGTTTCGCAAGTAAGG-TTTT-TTTCCTG
64 CAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCC-A
* * *
73970 CCAATTTTTATAAAGTGTAAG-TTCATGCCTC
128 CCAATTTTTA-AAAATATAAGATT-AGGCCTC
* * * * * * *** * * *
74001 AAATTAGCCAAGCATGGAT-TCTAGTAATGATCTTGATTCATTTT-ATGATTAGGTACTATAAAC
1 AAATGAGACAAACATGAATCTC-A-TACTAATCCCCATT-ATTTTCAAGATTAGGCACCATAAAC
* ** * * ** ** *
74064 ACATTCTGATCATTTA-GATAAATGATATTGATGATTTTCTTTTGCACA-AAAATCTTTTCTTTG
63 ACAGTCTTCTCA-TTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTCTTTC
* * * * *
74127 C-CCTATTTTCCTTAAAAT-TAAAATTCA-TCCTTT
126 CACCAATTTT--TAAAAATATAAGATT-AGGCC-TC
* * * * * * ** * * *
74160 AAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACAC
1 AAATGAGACAAACATGAA-TCTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACAC
* * * * * *
74225 ATTC-CCTTCATTACGG-TACTTGACATTGATGCATTGGTGTCT-CAAGAATA-GCTTTTCTTTC
65 AGTCTTC-TCATTA-GGATACATGATATTGATGCTTTGGT-TTTGCAAGAA-AGGCTTTTCTTTC
* * ***
74286 CACC-GTTTTTAATAGAATCA-AAGTTTCTCCCTC
126 CACCAATTTTTAA-A-AAT-ATAAGATTAGGCCTC
* * * * *
74319 TAAA-GAGATAAACATGAATACTCATACTAATCCCCATTATTTTTAGGAATAGGCACCCGTAAAC
1 -AAATGAGACAAACATGAAT-CTCATACTAATCCCCATTATTTTCAAGATTAGGCA-CCATAAAC
** * * * * *
74383 TGAGTCTTCTCATAAGGATATAGGATATTGATGCCTTGGTTTCT-CAAGAAAGGC-TTTCTTCCC
63 ACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTT-TGCAAGAAAGGCTTTTCTTTCC
* * * *
74446 ACCAATTTTTGTAAAGTCTAAG-TTCATGCCTC
127 ACCAATTTTT-AAAAATATAAGATT-AGGCCTC
* * * * * * *** * ** * *
74478 AAATGAGACAGAGATGGAT-TCGTAATGATCTTTATTCATTAT-GTGATTAGGCACTAAAAACAC
1 AAATGAGACAAACATGAATCTCATACTAATCCCCATT-ATTTTCAAGATTAGGCACCATAAACAC
* * * * * ** * *** *
74541 ATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTTGC-CC
65 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCACC
* * * ** *
74605 TATTTTCCTTAAAATA-AAAATTCAACCCTT
130 AATTTT--TAAAAATATAAGATT-AGGCCTC
* * * * * * * * * *
74635 AAAT-ATGACAAGCATCAATTGTCAAAAC-AGTCTCCATTCTTTTCAAGATTGGGAATCA-AGAA
1 AAATGA-GACAAACATGAA-TCTC-ATACTAATCCCCATTATTTTCAAGATTAGGCACCATA-AA
* * * * *
74697 CACATTC-TCTTCTTTAGGATACATGATATTGATGCTTTAGTGTCGCAAGAAAAGG-TTTTCTTT
62 CACAGTCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTTCTTT
* * * * *
74760 CCACC-ATTTTGGATAGAATCA-AAG-TTTGTCTCTT
125 CCACCAATTTT-TA-AAAAT-ATAAGATTAGGC-CTC
* * * * * *
74794 AAATAAGTCAAACATGAATACTCATGCTAACCCCCAATT-TTTTCAGGATTAGGCACCATAAATA
1 AAATGAGACAAACATGAAT-CTCATACTAATCCCC-ATTATTTTCAAGATTAGGCACCATAAACA
* * * * * ** *
74858 TAGTCTTCTCATTAAGATAGATGAAATTGATGCTTTAGTTTCACAAGAAAGGC-TTT-ATTCTCA
64 CAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTC-CA
74921 CCAATTTTT
128 CCAATTTTT
74930 GTTAAGTCTA
Statistics
Matches: 1668, Mismatches: 518, Indels: 320
0.67 0.21 0.13
Matches are distributed among these distances:
149 1 0.00
150 4 0.00
151 59 0.04
152 42 0.03
154 3 0.00
155 2 0.00
156 143 0.09
157 143 0.09
158 549 0.33
159 598 0.36
160 118 0.07
161 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
AAATGAGACAAACATGAATCTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACACA
GTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCCACCA
ATTTTTAAAAATATAAGATTAGGCCTC
Found at i:73356 original size:475 final size:473
Alignment explanation
Indices: 72426--78260 Score: 6186
Period size: 475 Copynumber: 12.4 Consensus size: 473
72416 CTCTCTAAGA
*
72426 TAAATAAGACAAACATGAATTGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* *
72491 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAGGGCTTTCTTTCCACT
66 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACC
* * * ** * *
72556 AA-TTTT-TATACTGTAAGATCGGGCCTCAAATGAGACAAATATGGATTCTAATAATGATCTTCA
131 AATTTTTGTAAAGTCTAAG-TTAGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * *
72619 TTCATTTTGGGATTAGGCACTATAAACACATTCTTCTC-TCTAGGATAAACGATATTGATGATTT
195 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT-TAGGATAAATGATATTGATGATTT
* * *
72683 TCTTTTGTATGGAAAA-CTTTTCTTTACCCTATTTTCCTTAAAATCAAGGTTCATCCCTTAAATA
259 TCTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * *
72747 AGGCAAGCATTGATTCTCAG-AACAGTCTCCTTTGTTTTCAAGATTGGGAACCAAAAACACATTC
323 A-GCAAGCATCGATTCTC-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC
* * * *
72811 CTTTCATTAAGATACAAGACATTGATGCTTTGGTGTCCCAAGAAAAGCTTTTCTTTCCA--AGTT
386 CCTTCATTAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TT
*
72874 ATTGATAGAATCAAAGTTTGTCTCT
449 TTTGATAGAATCAAAGTTTGTCTCT
* *
72899 TAAATATGGCAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
*
72964 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTCTTTCCACC
66 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACC
** * * * * *
73029 AATTTTTAAAAACTATAAGATTAGGCCTCGAATGAGATAAACATGTATTCTAGTAATGATCTTCA
131 AATTTTTGTAAAGTCTAAG-TTAGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* ** * *
73094 TTTATTTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATTTTGATGGTTTT
195 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * *
73159 GTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAACTCAAAGTTCATCCCTCAAATAAA
260 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AA
* * *
73224 GTAAGCATTGATTCTCAG-AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAATACATT-CC
324 GCAAGCATCGATTCTC-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
** * * * * * * *
73287 TTTTTTAGGATACATGATATTAATGCCTTGCTGTCCCATGAGAAGCTTTTCTTTTCACCATTTTT
388 TTCATTAGGATACATGACATTGATGCTTTG-TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
73352 GATAGAATCAAAGTTCGTCCCT
452 GATAGAATCAAAGTTTGTCTCT
* ** ** * * **
73374 CAAATGGGACAAACATGAATCACCATGCTAATCCCCA-T-TCTT-----TTAGGCATTATAAACA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* * *
73432 TATTCTTCTCATTAGGATACATGATATTGATGCTTTGATTTTGCAAGAAAGGCTTTCTTTCTACC
66 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACC
* * * * * * * *
73497 AATTTTTATAAATTGTAAGTTTGGGCCTTAAATGAGATAAACATGTATTCTAGTAATGATCTTAA
131 AATTTTTGTAAAGTCTAAG-TTAGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * * *
73562 TTCATTTTGTGATTAAGCACTAGAAACACATTCTTCTCATTAGGATAAATGATTTTGATG-TTTT
195 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
73626 CTTTTACTTGAAAATCTTTTCTTTGTCGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATACG
260 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * * * *
73691 ACAAGCATTGATTCTCGAAATAATCTCCATTCTTTTCAGGATTGGGAACCAAAAGCACATTCCTT
325 -CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
** * * **
73756 TCATTAGGATACAAAACATTGATGTTTTGGTGTC-CTAAGAAAAGCTTTTCTTTCTACTGTTTTT
389 TCATTAGGATACATGACATTGATGCTTT-GTGTCGC-AAGAAAAGCTTTTCTTTCCACCATTTTT
*
73820 GATAGAATCAAAGTTTAT-TCCT
452 GATAGAATCAAAGTTTGTCT-CT
* * ** * *
73842 CAAA-AGAGACAAACATGAATTGTTGTACTAATCCCTATT-TTTTCCAAGATTAGGCACCATAAG
1 TAAATA-AGACAAACATGAATCGTCATACTAATCCCCATTATTTT-CAAGATTAGGCACCATAAA
* ** * * ** * * * *
73905 CGTAGTCTTCTTGTTATGATAGACAATATTGATGCTTTTGTTTCGCAAGTAAGG-TTTTTTTCCT
64 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCC-
* * * * * * *
73969 GCCAATTTTTATAAAGTGTAAGTTCATGCCTCAAATTAGCCAAGCATGGATTCTAGTAATGATCT
128 ACCAATTTTTGTAAAGTCTAAGTT-AGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* * * **
74034 TGATTCATTTTATGATTAGGTACTATAAACACATTCTGATCATTTA-GATAAATGATATTGATGA
192 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGATATTGATGA
** * * *
74098 TTTTCTTTTGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAATTCATCCTTTAAA
256 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
74163 TAAGACAAGCATCAATTCTCATAATAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACACATT
321 TAAG-CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
* * * * *
74228 CCCTTCATTACGG-TACTTGACATTGATGCATTGGTGTCTCAAGAATAGCTTTTCTTTCCACCGT
385 CCCTTCATTA-GGATACATGACATTGATGC-TTTGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * *
74292 TTTTAATAGAATCAAAGTTTCTCCCT
448 TTTTGATAGAATCAAAGTTTGTCTCT
* * * * * *
74318 CTAAA-GAGATAAACATGAATAC-TCATACTAATCCCCATTATTTTTAGGAATAGGCACCCGTAA
1 -TAAATAAGACAAACATGAAT-CGTCATACTAATCCCCATTATTTTCAAGATTAGGCA-CCATAA
* * * * *
74381 AC-TGAGTCTTCTCATAAGGATATAGGATATTGATGCCTTGGTTTCT-CAAGAAAGGCTTTCTTC
63 ACAT-AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTT-TGCAAGAAAGGCTTTCTTT
* * *
74444 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAGAGATGGATTC--GTAATGAT
126 CCACCAATTTTTGTAAAGTCTAAGTT-AGGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * *
74507 CTTTATTCATTATGTGATTAGGCACTAAAAACACATTCTCCTCTTTAGGATAAATGATATTGATG
190 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
74572 ATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCAACCCTTAA
255 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * ** * *
74637 ATATGACAAGCATCAATTGTCAAAACAGTCTCCATTCTTTTCAAGATTGGGAATCAAGAACACAT
320 ATAAG-CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
* * * *
74702 TCTCTTCTTTAGGATACATGATATTGATGCTTTAGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT
384 TCCCTTCATTAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
*
74767 TTTGGATAGAATCAAAGTTTGTCTCT
448 TTTTGATAGAATCAAAGTTTGTCTCT
* * * *
74793 TAAATAAGTCAAACATGAATAC-TCATGCTAACCCCCAATT-TTTTCAGGATTAGGCACCATAAA
1 TAAATAAGACAAACATGAAT-CGTCATACTAATCCCC-ATTATTTTCAAGATTAGGCACCATAAA
* * * * * ** *
74856 TATAGTCTTCTCATTAAGATAGATGAAATTGATGCTTTAGTTTCACAAGAAAGGCTTT-ATTCTC
64 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTC-C
* * * * * *
74920 ACCAATTTTTGTTAAGTCTAAGTTTGTGCTTCCAATGCA-ATAAACTTGGATTCTAGTAATGATC
128 ACCAATTTTTGTAAAGTCTAAGTTAG-GCCTCAAATG-AGACAAACATGGATTCTAGTAATGATC
* **
74984 TTCATTCATTTTGTGATTAAGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGATG-
191 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
75048 TTTT-TTTTTCATTG-AAATCTTTTCTTTACCCTATTTTCATTAGAATCAAAGTTCAT-CCTTAA
256 TTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * **
75110 ATAAGTCAAACATCGATTCTCGTAACTA-TTTCCATTCTTTTCAAGATTTGGAACCAAGTACACA
320 ATAAG-CAAGCATCGATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * *
75174 TTCCCTTCATTAGGATACATGACATTGATGCTTTGACGGT-GCAAGAAAATG-ATTTCTTTCCAT
383 TTCCCTTCATTAGGATACATGACATTGATGCTTTG--TGTCGCAAGAAAA-GCTTTTCTTTCCAC
*
75237 CATTTTTGATAGAAACAAAGTTTGTCTCT
445 CATTTTTGATAGAATCAAAGTTTGTCTCT
* * * **
75266 TAAATAAG------ATTAA-----A-A--AAT-CTC-TTATTTTCAGGATTAGGCATAATAAACA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* * ** * * *** * * *
75315 TAGTCTTCTCGTTAGGATAGACAAAATTGATGCTTAGGTTTCATAAGAAATGCTTTCTTCCCACA
66 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACC
* * * * * * *
75380 AATTTTTGCAAAGTCTTAGTTCGTGCCTCAAGTGTGACAAACATGGATTCTATTAATGATCTTAA
131 AATTTTTGTAAAGTCTAAGTTAG-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * * *
75445 TTCATTTTGTGATTAGGCATTATAAACACATTCTCCACATTAGGATAAATGATACTAATGATTTT
195 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTT
* * * * * * * * *
75510 TTTTTTGCATGGAAATATTTTTTTTGCCATGTTTTTCTTAAAATCGAAGTTCATCCCATAAATAA
259 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-A
* * * * * * * * *
75575 AACAAACATCAATTCTCGTAATAGTCTCTATTCTTTTCTAGATTAGGAACTAGAAACACATTCCC
323 AGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * ** *
75640 TTCATTAGG----ATGTCATTGATGCTTTGGTGTCCCAAGAAAAGCTATTCTTTTAACCATATTT
388 TTCATTAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
75701 GATAGAATTAAAGTTTGTCTCT
452 GATAGAATCAAAGTTTGTCTCT
* * * *
75723 TAAATAAGACAAACATTAATAC-TCATACTACTCCCCATTCTTTTTAAGATTAGGCACCATAAAC
1 TAAATAAGACAAACATGAAT-CGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAAC
* ** * ** *
75787 TTAGAATTCTCATAAGGATACATGATATTGATGCTTTGGTTTTGCAAGAATTGCTTTC-TTCCAT
65 ATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCAC
* * * *
75851 TAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA-T-TAGTAACGACCTTC
130 CAATTTTTGTAAAGTCTAAGTT-AGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * *
75914 ATCCATTTTGTGATTAGGTACTACAAAAACATTCTCCTCATTAGGATAAATGATATTGATGATTT
194 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * ** *
75979 TCTTTTGAATAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTCCCATAAATAA
259 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * * * *
76044 GACAAGCGTTGATTCACGTAATAGTCTCCATTCTTTTCTAGATT-AGAGACCAAAAACAGAATT-
324 G-CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA-ACCAAAAACA-CATTC
* *
76107 CCTTCATTAGGATACATGACATTGATGCTTTGTGTCGTAAGAAAAGCTTTTCTTTCAACCATTTT
386 CCTTCATTAGGATACATGACATTGATGCTTTGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
76172 TGATACAATCAAAGTATGTCTCT
451 TGATAGAATCAAAGTTTGTCTCT
* * * * *
76195 TAAATAAGATAAACATTAATAC-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAAC
1 TAAATAAGACAAACATGAAT-CGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAAC
* * * * * **
76259 TTAGTCATCTCATAAGTATACATGATATTGATGCTTTTG-TTT-CACTAAAGGCTTTC-TTCACA
65 ATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTC-CA
* *
76321 CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT-ACGACAAACATGG-TT-TAGTAATAATCT
129 CCAATTTTTGTAAAGTCTAAGTTAG-GCCTCAAATGA-GACAAACATGGATTCTAGTAATGATCT
*
76383 CCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
192 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * * * * * * **
76448 TTTGTTTTGCATGGAAATCATTTCATTGCCCTATTTTTCGTAAAATAAAAATTCATCCGATAAAT
257 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* ** ** * *
76513 ATAACAAGCATTAATTCTCGTAACAGTCTCTTTTCTTCTT-AAGTATTGGGAACCAAGAATACAT
322 A-AGCAAGCATCGATTCTCGTAACAGTCTCCATTCTT-TTCAAG-ATTGGGAACCAAAAACACAT
* * * *** *
76577 TCACTTCATTAGGATACATGACATTGATGCTTTGGGTTGCAAGAAAAAGGGCTTCTTTCCACCGT
384 TCCCTTCATTAGGATACATGACATTGATGCTTTGTGTCGCAAG-AAAAGCTTTTCTTTCCACCAT
*
76642 TTTCGATAGAATCAAAGTTTGTCTCT
448 TTTTGATAGAATCAAAGTTTGTCTCT
* * * *
76668 TAAATAAGACAAACATGAATAGTCCTACTAATCCCCATTATTTTCAGGATTAGGCACAATAAACA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* * * * * *
76733 TAGTATTCTCATTAGAATAGATGA-ATTGATGCTTTGGGTTTCGCAAGAAAGGTTTTCTTCCCAC
66 TAGTCTTCTCATTAGGATACATGATATTGATGCTTT-GGTTTTGCAAGAAAGGCTTTCTTTCCAC
* * * * * *
76797 TAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGAGATAAGCAAGGATTCTAGTAATGATCTTC
130 CAATTTTTGTAAAGTCTAAGTTAG-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* *
76862 ACTT-ATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGGTATTGATGATT
194 A-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * *
76926 TTCTTTCGCATGAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATA
258 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-
* * * ** * *
76991 AATCCAGTATCGATTCTCACAACAGTCTCCATT-TTTTTAAGATTGGGAACCAAGAACACATTCC
322 AAGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
* * *
77055 CTTCATTAGGATACATGACATTGATGCTTTAGTGTCGTAAGAAAAGGTTTTCTTACCACCATTTT
387 CTTCATTAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
77120 CGATAGAATCAAAGTTTGTCTCT
451 TGATAGAATCAAAGTTTGTCTCT
* * * * * * * *
77143 TAGATAAGACAAACATGAATAGTCATCCTAATACCCATTCTTTTTAGGATTAGGCACCCTAAACA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
* * * * *
77208 TAGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTTGTAGGAAATGCTTTCTTTCCACC
66 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACC
* * * * *
77273 AATTTTTGTAAAGTGTTAGTTCGTGCCTCAAATGAGGCAAACAAGGATTCTAGTAATGATCTTCA
131 AATTTTTGTAAAGTCTAAGTTAG-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * *
77338 TTCATTTTGTGAGTT-GGCACTATAAACATATTCTCCTCATTAGGATAAAAGATATTGATGGTTC
195 TTCATTTTGTGA-TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT-GAT-
* * * *
77402 TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCAAAGTTCATCCCATAAAT
257 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* *
77467 AAGACAAGCATCGATTCTCGT-A-AGTCTCTATTCTTTTCAAGATTGGGAACCAAGAACACATTC
322 AAG-CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC
* * * * * * *
77530 CCATCATTAGGATACATGACATTGATGCTTTAGTGTCACAAGAAAAGGTTTTCTTTCGATCGTGT
386 CCTTCATTAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
*
77595 TTGATAAAATCAAAGTTTGTCTCT
450 TTGATAGAATCAAAGTTTGTCTCT
* * * * * *
77619 TAAATAAGTCAAACATAAATAGTCATACTAATCTCCATTCTTTTC-AGCGTTAGGCACCATAAAC
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAG-ATTAGGCACCATAAAC
* * * * *** *
77683 TTAGTCTTCTCGTAAGGATACATGATATTGGTGCTTTGGTTTCATAAGAAAGGCTTTC-TTCTCG
65 ATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTC-CA
* * * *
77747 CTAATTTTTGTAAAGTCTGAGTTCATGCCTCAAAT-AGAAAAACATGGA-T-TAGTAATGATCTT
129 CCAATTTTTGTAAAGTCTAAGTT-AGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* *
77809 CATTCATTTTGTGATTAGGCAATATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAAT
193 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* *
77874 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAGTA
258 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * *
77939 AGGAAAGCATTGATTCTCGTAATAATCTCCATTCTTTTAAAGATTGAGAACCAAAAACACATTCC
323 A-GCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
* *** * *
78004 CTTCATTAGGATACATGGCATTGATGCTTTTGTGTTAAAAGAAAAG-TTTTCTTTCCAACGTTTT
387 CTTCATTAGGATACATGACATTGATGC-TTTGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
78068 TGATAGAATCAGAGTTTGTCTCT
451 TGATAGAATCAAAGTTTGTCTCT
* * **
78091 TAAATAAGACAAACATGAATAGTCATACTAATTCCC-TCCCTTTTC-AGAATTAGGCACCATAAA
1 TAAATAAGACAAACATGAATCGTCATACTAATCCCCAT-TATTTTCAAG-ATTAGGCACCATAAA
* ** *
78154 CATAGTCTTCTCATTAGTATTGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTC---CCA
64 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCA
* * * * *
78216 CCAAATTTTCTAAAGTGTAAGTTTGTGCCT-TAATAGAGACAAACA
129 CCAATTTTTGTAAAGTCTAAGTTAG-GCCTCAAAT-GAGACAAACA
78261 AGGCTTTCAT
Statistics
Matches: 4522, Mismatches: 708, Indels: 267
0.82 0.13 0.05
Matches are distributed among these distances:
456 5 0.00
457 242 0.05
458 5 0.00
459 8 0.00
460 40 0.01
461 67 0.01
462 3 0.00
463 5 0.00
466 3 0.00
467 117 0.03
468 289 0.06
469 138 0.03
470 90 0.02
471 281 0.06
472 394 0.09
473 615 0.14
474 223 0.05
475 1098 0.24
476 567 0.13
477 322 0.07
478 10 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
TAAATAAGACAAACATGAATCGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACA
TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACC
AATTTTTGTAAAGTCTAAGTTAGGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGC
AAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
GAATCAAAGTTTGTCTCT
Found at i:80018 original size:21 final size:21
Alignment explanation
Indices: 79974--80030 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
79964 CGTTTGGCCA
* *
79974 CATGTATCGATA-AAATTCAT
1 CATGTATCGATACAATTTAAT
79994 CATGTATCGATACAATTTAAT
1 CATGTATCGATACAATTTAAT
80015 CATGTATCGATACAAT
1 CATGTATCGATACAAT
80031 GTTTCGATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 12 0.35
21 22 0.65
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.35
Consensus pattern (21 bp):
CATGTATCGATACAATTTAAT
Found at i:83228 original size:476 final size:475
Alignment explanation
Indices: 81349--84281 Score: 3350
Period size: 476 Copynumber: 6.2 Consensus size: 475
81339 GATCCTAATC
* * * *
81349 TGGAGACTATTACGAGAATTGATGCTTGTCATATATTTAAAGGATGAATTTTGATTTTAAGGAAA
1 TGGAGACTGTTATGAGAATCGATGCTTGTC--ATATTTAAGGGATGAATTTTGATTTTAAGGAAA
*
81414 ATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAAAT-ATCAATATCATTTATCCTAATGAGGAG
64 ATAAGGCAAAGAAAAGATTTCCATGCAAAAG-AAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * *
81478 AATGTGTTTATAGTGCCTAACCACAAAATGAATGAAGATCATTACTGGAATCCATATTTATCTTA
128 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * * * ** *
81543 TTTTAGGCACAAACTTACACTTCA-AAAAAATGAGTGGGAAGCAAGTTTTTCTTGTGAAACCAAA
193 TTTCAGGCACAAACTTAGACTTTACAAAAATTG-GTGGGAAGAAAGCCTTTCTTGCGAAACCAAA
* * * *
81607 GCAACAATATCATGTATCTTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAAAATGGG
257 GCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGG
* * *
81672 GATTAGTATGACTATTCATGTTTGCCTTATTTAAGCA-ACAAACTTTTATTCTATCAAAAACGGT
322 GATTAGTATGACTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAACAGT
* * ** *
81736 AGAAGGAAAA--------GC--CACTAAAGCATCAAAT-TCATGTATCCTAATATAGGGATTGTG
386 GGAAGGAAAACCTTTTTTGCGACACCAAAGCATC-AATGTCATGTATCCTAATGGAGGGAATGTG
* *
81790 TTTTTAGTTCCCAACCTTGAAAAGAA
450 TTTTTGGTTCCCAATCTTGAAAAGAA
* * * * *
81816 TAGAGGCTGTAACGAGAATCGCTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
1 TGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
** * * * * * *
81881 AAGATAAATAAAAGATTTTCATACAAAAGAAAATCATCAGTATTATTTATTCTAATGAGGAGAAT
66 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
81946 GTGTTTATAGTGCCTAATCACAGAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTT
131 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
** * * **
82011 -AGGCAGGAACATAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCAT
196 CAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* * * *
82075 CAACATCGTGTATCCTTTTGAGAAGACTATGATTATGGTGCTTAGTCCTGAAAAGAATGGGGATT
261 CAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
82140 AGTATGACTATTCACGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTA-TGGAT
326 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-AGTGGAA
* * * * * *
82204 GGAAAAGCTTTTTTTGCAACACCAAAGCATC-ATAGTCATGCATGCAAATGGAGGGAATGTGGTT
390 GGAAAA-CCTTTTTTGCGACACCAAAGCATCAAT-GTCATGTATCCTAATGGAGGGAATGTGTTT
*
82268 TTGGTTCCAAATCTTGAAAAGAA
453 TTGGTTCCCAATCTTGAAAAGAA
** * * *
82291 TGGAGGTTGTAATGAGAATCGATGCTTGT-ATAATTTCAGGGATTAATTTTGATTTTAAGGAAAA
1 TGGAGACTGTTATGAGAATCGATGCTTGTCAT-ATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * * *
82355 TAGGGCGAAGAAAAGATTTTCGTGCAAAA-AAAATCATCAATATCATTTATCCTAACGAGGCGAA
65 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
82419 TGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCTCATT
130 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * *
82484 TGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCG--A--TAGGCA
195 TCAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* ** * * *
82545 TCAATATCGTGTATCTTTACAAGAAGACTATGTTTATGGTGCCTAGTCCTGAATAGAATGGGGAT
260 TCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
82610 TAGTATGACTATTCATGTTTGTCTTAGTTAAGGGACAAACTTTGATTCGATCAAAAACCGTGGAC
325 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA-
* * * * * *
82675 A-GAAAAGCTTTTCATGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGGAGGGAATGTGTTC
389 AGGAAAACCTTTT-TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGGAGGGAATGTGTTT
*
82739 TTGGTTCCCAATCTT-AAAAGGAC
453 TTGGTTCCCAATCTTGAAAA-GAA
* * * * * * *
82762 TAGAGACTGTTATGAAAATCGATGCTTGTCATATTTATGAGATGAATTTTGATTTGAATGAAGAT
1 TGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
**
82827 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATTATAATGAGGAGAAT
66 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
82892 GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAGTGCATGTTTGTATCATTT
131 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* *
82957 CAAG-AGCGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
196 CAGGCA-CAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
** * * * * *
83021 AGAATATCATGTATCCTTATGAGAAGACTAAGATTATAGTGCCTAATCTTGAAAAGAATGGAGAT
260 TCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
83086 TAGTATGACTATT-TTCGTTTTTCTTATTGAAGAGACAAACTTTGATTTTATCAAAAACAGTGGA
325 TAGTATGACTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
* *
83150 AGGAAAAACCTTTTTTGCGACACCAAAGCATCAATGTCATGCA-CGTTAATGGAGGGAATGTGTT
389 AGG-AAAACCTTTTTTGCGACACCAAAGCATCAATGTCATGTATC-CTAATGGAGGGAATGTGTT
83214 TTTGGTTCCCAATCTTGAAAAGAA
452 TTTGGTTCCCAATCTTGAAAAGAA
* * * ** ** * *
83238 TGGAGGCTATAACAAGAATTAATGCTTATC-TTTTTCAAGGGATGAATTTTGATTTTAAGGAAAA
1 TGGAGACTGTTATGAGAATCGATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAA
* * * *
83302 TAGGGC---GAAGA-ATTT-CTTACAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAA
65 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
83361 TGTGTTTATAGTGCCTGATGACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
130 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
83426 TGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTCTTGC-AGAACCAAAGT
195 TCAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGA-AACCAAAGC
* * * * * *
83490 GTCAATATCTTTTA-CCATTATGAGGAGACTATGTTTATGGTGCCTAAT-CTTAAATAGAATGGG
259 ATCAATATCGTGTATCC-TTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAA-AGAATGGG
* * *
83553 GATTACTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAA-TGAT
322 GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAG-T
* * ** * * * * * *
83617 GGTTA-GAAAAGCTTTTCTTATGACACCAAAGCATCAGTATCTTATATCCTAGA-GAAAGGAATG
386 GG-AAGGAAAACCTTTT-TTGCGACACCAAAGCATCAATGTCATGTATCCTA-ATGGAGGGAATG
** * *
83680 TGTTCCTGGTTACTAATCTTGAAAAGAA
448 TGTTTTTGGTTCCCAATCTTGAAAAGAA
** *
83708 TGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAACCGATGAATTTTGATTTTATGGAAAAT
1 TGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * * * *
83773 AAGGAAAAGAAAAGATTTCCATGCAAAAGTAAATCATTAATATCATTTATTCAAAAGAAGG-GAA
66 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAA
*
83837 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATT
130 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
83902 TCAGGCACAAACATAGGCTTTACAAGAATTAGG-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
195 TCAGGCACAAACTTAGACTTTACAAAAATT-GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
* * * * * * * *
83966 ATCAACATTGTATATCCTTATGAAAAGACTATGATTATGGTGCCTAGTCATGAAAAAAATTGGGA
259 ATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGA
* **
84031 TTAGTATGACTATTGACAT-TTT-TCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTG
324 TTAGTATGACTATT--CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTG
* * * *
84094 GAAGGAAAAGCTTTTTTTGCGACATCAAAAGCAAT-AATGTCATGTATGCTAAGGGAGGGAATGT
387 GAAGGAAAA-CCTTTTTTGCGACA-CCAAAGC-ATCAATGTCATGTATCCTAATGGAGGGAATGT
84158 GTTTTTGGTTCCCAATCTTGAAAAGAA
449 GTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * ** * *
84185 TGGAGCCTATAATGAGAATCAACACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
1 TGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * *
84250 AGGGCAAAGAAAATATTTCAATGCAAAA-AAAA
66 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
84282 CTGTTAGGAT
Statistics
Matches: 2071, Mismatches: 328, Indels: 125
0.82 0.13 0.05
Matches are distributed among these distances:
463 1 0.00
464 168 0.08
465 151 0.07
467 24 0.01
469 17 0.01
470 361 0.17
471 268 0.13
472 146 0.07
473 13 0.01
474 99 0.05
475 190 0.09
476 469 0.23
477 159 0.08
478 5 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
TGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
CAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
CAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATT
AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAG
GAAAACCTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGGAGGGAATGTGTTTTTG
GTTCCCAATCTTGAAAAGAA
Found at i:83627 original size:946 final size:940
Alignment explanation
Indices: 81390--84259 Score: 3628
Period size: 946 Copynumber: 3.0 Consensus size: 940
81380 TATATTTAAA
** *
81390 GGATGAATTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAAAT-ATC
1 GGATGAATTTTGATTTTAAGGAAAAT-AGG--GCGAAGAGATTT-CATGC-AAA-AAAAATCATC
*
81454 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAATGAAGATCA
60 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * *
81519 TTACTGGAATCCATATTTATCTTATTTTAGGCACAAACTTACACTTCA-AAAAAATGAGTGGGAA
125 TTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGA-TGGGAA
* ** * * *
81583 GCAAGTTTTTCTTGTGAAACCAAAGCAACAATATCATGTATCTTTATGAGAAGACTATGATTATG
189 GAAAGCATTTCTTGCG-AACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTATGTTTATG
* * * *
81648 GTGCCTAATCCTGAAA-AAAATGGGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGCA-AC
253 GTGCCTAAT-CTTAAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGGAGAC
* * * *
81711 AAACTTTTATTCTATCAAAAACGGTAGAAGGAAAAG-----C----CACTAAAGCATCAAATTCA
316 AAACTTTGATTCTATCAAAAAC-GTGGAA-GAAAAGCTTTTCTTGACACCAAAGCATC-AATTCT
* * * * * * * *
81767 TGTATCCTAATA-TAGGGATTGTGTTTTTAGTTCCCAACCTTGAAAAGAATAGAGGCTGTAACGA
378 TGTATCCTAA-AGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGA
* * * *
81831 GAATCGCTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAA-GATAAATAAAAG
442 GAATCGATGCTTGTCATATTTAAGAGATGAATTTTGA-TTTAATGAAAATAAGGA-AAAGAAAAG
* * * * *
81895 ATTTTCATACAAAAGAAAATCATCAGTATTATTTATTCTAATGAGGAGAATGTGTTTATAGTGCC
505 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATTATAATGAGGAGAATGTGTTTATAGTGCC
* *
81960 TAATCACAGAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTT-AGGCAG-GAACAT
570 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCAGCGAACAT
* **
82023 AGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAACATCGTGTAT
635 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCGTGTAT
* * *
82088 CCTTTTGAGAAGACTATGATTATGGTGCTTAGTCCTGAAAAGAATGGGGATTAGTATGACTATTC
700 CCTTATGAGAAGACTATGATTATGGTGCCTAGTCATGAAAAGAAT-GGGATTAGTATGACTATTC
*
82153 ACGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTA-TGGATGGAAAAGCTTTTT
764 ACGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-AGTGGAAGGAAAAGCTTTTT
* * * *
82217 TTGCAACACCAAAGCATC-ATAGTCATGCATGCAAATGGAGGGAATGTGGTTTTGGTTCCAAATC
828 TTGCGACACCAAAGCATCAAT-GTCATGCATGCTAATGGAGGGAATGTGTTTTTGGTTCCCAATC
* * * * *
82281 TTGAAAAGAATGGAGGTTGTAATGAGAATCGATGCTTGTATAATTTC-AG
892 TTGAAAAGAATGGAGGCTATAATGAGAATCAATGCTTGTCT-TTTTCAAG
* *
82330 GGATTAATTTTGATTTTAAGGAAAATAGGGCGAAGAAAAGATTTTCGTGCAAAAAAAATCATCAA
1 GGATGAATTTTGATTTTAAGGAAAATAGGGCGAAG---AGA-TTTCATGCAAAAAAAATCATCAA
* * *
82395 TATCATTTATCCTAACGAGGCGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
62 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
82460 ACTAGAATCCATGTTTTTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAA
127 ACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGATGGGAAGAA
* * * **
82525 AGCATTTCTTGCG-A--TAGGCATCAATATCGTGTATCTTTACAAGAAGACTATGTTTATGGTGC
192 AGCATTTCTTGCGAACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTATGTTTATGGTGC
* * * *
82587 CTAGTCCTGAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGG-GACAAACT
257 CTAATCTTAAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAGGAGACAAACT
*
82651 TTGATTCGATCAAAAACCGTGGACAGAAAAGCTTTTCATGTGACACCAAAGCATCAATGTCTTGT
321 TTGATTCTATCAAAAA-CGTGGA-AGAAAAGCTTTTC-T-TGACACCAAAGCATCAAT-TCTTGT
* * *
82716 ATCCTAAAGGAGGGAATGTGTTCTTGGTTCCCAATCTT-AAAAGGACTAGAGACTGTTATGAAAA
381 ATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-GAATAGAGACTGTTATGAGAA
* * *
82780 TCGATGCTTGTCATATTTATGAGATGAATTTTGATTTGAATGAAGATAAGGCAAAGAAAAGATTT
445 TCGATGCTTGTCATATTTAAGAGATGAATTTTGATTT-AATGAAAATAAGGAAAAGAAAAGATTT
82845 CCATGCAAAAGAAAATCATCAATATCATTTATTATAATGAGGAGAATGTGTTTATAGTGCCTAAT
509 CCATGCAAAAGAAAATCATCAATATCATTTATTATAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * *
82910 CACAAAATAAATGAAGATCATTACTAGAGTGCATGTTTGTATCATTTCAAG-AGCGAACTTAGAC
574 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCAGCGAACATAGAC
** * *
82974 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAAGAATATCATGTATCCTT
639 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCGTGTATCCTT
* * * * **
83039 ATGAGAAGACTAAGATTATAGTGCCTAATCTTGAAAAGAATGGAGATTAGTATGACTATTTTCGT
704 ATGAGAAGACTATGATTATGGTGCCTAGTCATGAAAAGAATGG-GATTAGTATGACTATTCACGT
* * * *
83104 TTTTCTTATTGAAGAGACAAACTTTGATTTTATCAAAAACAGTGGAAGGAAAAACCTTTTTTGCG
768 TTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGCTTTTTTTGCG
* *
83169 ACACCAAAGCATCAATGTCATGCACGTTAATGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA
833 ACACCAAAGCATCAATGTCATGCATGCTAATGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA
** * *
83234 AGAATGGAGGCTATAACAAGAATTAATGCTTATCTTTTTCAAG
898 AGAATGGAGGCTATAATGAGAATCAATGCTTGTCTTTTTCAAG
* *
83277 GGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGA-ATTTCTTACAAAAAAAATCATCAATATC
1 GGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGAGATTTCATGCAAAAAAAATCATCAATATC
* *
83341 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTGATGACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * *
83406 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCC
131 GAATCCATGTTTATCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGATGGGAAGAAAGCA
** * * * * *
83471 TTTCTTGCAGAACCAAAGTGTCAATATCTTTTACCATTATGAGGAGACTATGTTTATGGTGCCTA
196 TTTCTTGC-GAACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTATGTTTATGGTGCCTA
*
83536 ATCTTAAATAGAATGGGGATTACTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGA
260 ATCTTAAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGA
* * * *
83601 TTCTATCAAAAATGATGGTTAGAAAAGCTTTTCTTATGACACCAAAGCATCAGTATCTTATATCC
325 TTCTATCAAAAACG-TGG-AAGAAAAGCTTTTC-T-TGACACCAAAGCATCAAT-TCTTGTATCC
* * * * * *
83666 TAGAGAAAGGAATGTGTTCCTGGTTACTAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
385 TAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGAT
** *
83731 GCTTGTCATATTTAACCGATGAATTTTGATTTTATGGAAAATAAGGAAAAGAAAAGATTTCCATG
450 GCTTGTCATATTTAAGAGATGAATTTTGATTTAAT-GAAAATAAGGAAAAGAAAAGATTTCCATG
* * *
83796 CAAAAGTAAATCATTAATATCATTTATTCA-AAAGAAGG-GAATGTGTTTATAGTGCCTAATCAC
514 CAAAAGAAAATCATCAATATCATTTATT-ATAATG-AGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
83859 AAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTCAGGCA-CAAACATAGGCTTT
577 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCAGCGAACATAGACTTT
* * *
83923 ACAAGAATTAGG-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATTGTATATCCTTAT
642 ACAAAAATT-GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCGTGTATCCTTAT
* * * *
83987 GAAAAGACTATGATTATGGTGCCTAGTCATGAAAAAAATTGGGATTAGTATGACTATTGACATTT
706 GAGAAGACTATGATTATGGTGCCTAGTCATGAAAAGAA-TGGGATTAGTATGACTATTCACGTTT
* **
84052 TTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTTTTGCGAC
770 TTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGCTTTTTTTGCGAC
* * *
84117 ATCAAAAGCAAT-AATGTCATGTATGCTAAGGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA
835 A-CCAAAGC-ATCAATGTCATGCATGCTAATGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* **
84181 AGAATGGAGCCTATAATGAGAATCAACACTTGTCTTATTT-AAG
898 AGAATGGAGGCTATAATGAGAATCAATGCTTGTCTT-TTTCAAG
* *
84224 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
1 GGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGA
84260 AAATATTTCA
Statistics
Matches: 1671, Mismatches: 209, Indels: 93
0.85 0.11 0.05
Matches are distributed among these distances:
934 3 0.00
935 113 0.07
936 4 0.00
937 4 0.00
938 6 0.00
939 128 0.08
940 40 0.02
941 3 0.00
942 153 0.09
943 2 0.00
944 2 0.00
945 19 0.01
946 752 0.45
947 435 0.26
948 7 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (940 bp):
GGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGAGATTTCATGCAAAAAAAATCATCAATATC
ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTATCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGATGGGAAGAAAGCA
TTTCTTGCGAACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAA
TCTTAAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGAT
TCTATCAAAAACGTGGAAGAAAAGCTTTTCTTGACACCAAAGCATCAATTCTTGTATCCTAAAGA
AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGATGCTTGT
CATATTTAAGAGATGAATTTTGATTTAATGAAAATAAGGAAAAGAAAAGATTTCCATGCAAAAGA
AAATCATCAATATCATTTATTATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCAGCGAACATAGACTTTACAAAAATT
GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTA
TGATTATGGTGCCTAGTCATGAAAAGAATGGGATTAGTATGACTATTCACGTTTTTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGCTTTTTTTGCGACACCAAAGCATC
AATGTCATGCATGCTAATGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCTA
TAATGAGAATCAATGCTTGTCTTTTTCAAG
Found at i:84607 original size:13 final size:13
Alignment explanation
Indices: 84589--84615 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84579 ATATTATGCT
84589 TTGTATCGATACA
1 TTGTATCGATACA
84602 TTGTATCGATACA
1 TTGTATCGATACA
84615 T
1 T
84616 GAAACTGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:84670 original size:13 final size:13
Alignment explanation
Indices: 84652--84677 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84642 TGTTTGTACC
84652 ATGTATCGATACA
1 ATGTATCGATACA
84665 ATGTATCGATACA
1 ATGTATCGATACA
84678 TGATGAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:86298 original size:9 final size:9
Alignment explanation
Indices: 86281--86314 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
86271 GTCAACCATC
86281 AATGATGAT
1 AATGATGAT
86290 GAA-GATGAT
1 -AATGATGAT
86299 AATGATGAT
1 AATGATGAT
86308 AATGATG
1 AATGATG
86315 GTGACTCGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.29
Consensus pattern (9 bp):
AATGATGAT
Found at i:89533 original size:13 final size:13
Alignment explanation
Indices: 89492--89577 Score: 70
Period size: 13 Copynumber: 7.5 Consensus size: 13
89482 CGGTTACAAG
89492 CAATGTATCGATA
1 CAATGTATCGATA
89505 CAA--T-TC-AT-
1 CAATGTATCGATA
89513 C-ATGTATCGATA
1 CAATGTATCGATA
*
89525 CATTGTATCGATA
1 CAATGTATCGATA
89538 CAATGTA-C----
1 CAATGTATCGATA
89546 C-ATGTATCGATA
1 CAATGTATCGATA
*
89558 CATTGTATCGATA
1 CAATGTATCGATA
89571 CAATGTA
1 CAATGTA
89578 CCATGTATCG
Statistics
Matches: 57, Mismatches: 4, Indels: 24
0.67 0.05 0.28
Matches are distributed among these distances:
7 6 0.11
8 3 0.05
9 3 0.05
10 4 0.07
11 3 0.05
12 3 0.05
13 35 0.61
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:89537 original size:33 final size:33
Alignment explanation
Indices: 89495--89592 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
89485 TTACAAGCAA
*
89495 TGTATCGATACAAT-TCATCATGTATCGATACAT
1 TGTATCGATACAATGT-ACCATGTATCGATACAT
89528 TGTATCGATACAATGTACCATGTATCGATACAT
1 TGTATCGATACAATGTACCATGTATCGATACAT
89561 TGTATCGATACAATGTACCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
89593 AACAGTGATA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
33 62 0.98
34 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:89553 original size:20 final size:20
Alignment explanation
Indices: 89528--89593 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
89518 ATCGATACAT
89528 TGTATCGATACAATGTACCA
1 TGTATCGATACAATGTACCA
89548 TGTATCGATAC-A--T----
1 TGTATCGATACAATGTACCA
89561 TGTATCGATACAATGTACCA
1 TGTATCGATACAATGTACCA
89581 TGTATCGATACAA
1 TGTATCGATACAA
89594 ACAGTGATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 1 0.03
17 1 0.03
19 1 0.03
20 24 0.62
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAATGTACCA
Found at i:89680 original size:13 final size:13
Alignment explanation
Indices: 89662--89688 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89652 TACAATAAAG
89662 ATGTATCGATACA
1 ATGTATCGATACA
89675 ATGTATCGATACA
1 ATGTATCGATACA
89688 A
1 A
89689 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:91983 original size:13 final size:13
Alignment explanation
Indices: 91965--91989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91955 CATCAAGTGT
91965 TGTATCGATACAA
1 TGTATCGATACAA
91978 TGTATCGATACA
1 TGTATCGATACA
91990 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:92070 original size:13 final size:13
Alignment explanation
Indices: 92052--92076 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92042 ATCACTTAAA
92052 TGTATCGATACAT
1 TGTATCGATACAT
92065 TGTATCGATACA
1 TGTATCGATACA
92077 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:92141 original size:52 final size:52
Alignment explanation
Indices: 92085--92213 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
92075 CACTGATTTT
* *
92085 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
92137 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTTAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
92189 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
92214 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:95679 original size:13 final size:13
Alignment explanation
Indices: 95661--95687 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
95651 ACAATATTCC
95661 TTGTATCGATACA
1 TTGTATCGATACA
95674 TTGTATCGATACA
1 TTGTATCGATACA
95687 T
1 T
95688 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:98230 original size:33 final size:32
Alignment explanation
Indices: 98188--98250 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
98178 CACCCAGATG
* * *
98188 TATCGATACATTATGCTTTGTATCGATACATTA
1 TATCGATACATGAT-CATTGTATCAATACATTA
98221 TATCGATACATGATCATTGTATCAATACAT
1 TATCGATACATGATCATTGTATCAATACAT
98251 GGACAATGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (32 bp):
TATCGATACATGATCATTGTATCAATACATTA
Found at i:98243 original size:19 final size:19
Alignment explanation
Indices: 98215--98269 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
98205 TTGTATCGAT
*
98215 ACATTATATCGATACAT-G
1 ACATTGTATCGATACATGG
*
98233 ATCATTGTATCAATACATGG
1 A-CATTGTATCGATACATGG
*
98253 ACAATGGTATCGATACA
1 AC-ATTGTATCGATACA
98270 GGAAATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 1 0.03
19 15 0.50
20 14 0.47
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:98268 original size:20 final size:19
Alignment explanation
Indices: 98221--98269 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
98211 CGATACATTA
*
98221 TATCGATACATGATCATTG
1 TATCGATACATGATCATGG
*
98240 TATCAATACATGGA-CAATGG
1 TATCGATACAT-GATC-ATGG
98260 TATCGATACA
1 TATCGATACA
98270 GGAAATTGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (19 bp):
TATCGATACATGATCATGG
Found at i:98337 original size:13 final size:13
Alignment explanation
Indices: 98316--98345 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
98306 CGATACATGG
*
98316 TACATTGTATCGA
1 TACAATGTATCGA
98329 TACAATGTATCGA
1 TACAATGTATCGA
98342 TACA
1 TACA
98346 TGATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:98343 original size:33 final size:33
Alignment explanation
Indices: 98301--98365 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
98291 TACCACTGTT
* *
98301 TGTATCGATACATGGT-ACATTGTATCGATACAA
1 TGTATCGATACATGATGA-ATTGAATCGATACAA
98334 TGTATCGATACATGATGAATTGAATCGATACA
1 TGTATCGATACATGATGAATTGAATCGATACA
98366 TTGCTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGATGAATTGAATCGATACAA
Found at i:101135 original size:476 final size:475
Alignment explanation
Indices: 99120--105761 Score: 7058
Period size: 476 Copynumber: 14.0 Consensus size: 475
99110 ACCATGAATG
* * *
99120 TCATTTATCCTTATGAGGA-AAGTGTGTTTA-AGTGCCTGATCACAAAATGAATAAAGATCATTA
1 TCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * * * *
99183 CTAGAATCTATGTTTGTCTCATTTCAGGCGCGGACTTAGAGTTTACAAAATTTAGTGAGAAGAAA
65 CTAGAATCCATGTTTGTCTCATTTC-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * * * * *
99248 GCCCTTCTTGCAAAACCAAAGCATTAATATTGTCTAT-CTTAACGAGAAAACTATGTTTATGGTG
129 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT-ATGAGAAGACTATGATTATGGTG
* * * * *
99312 CCTAATCTTGAAAAGAATGGCGATTAGTAGGACTATTTAAGTTTGT-TATATTTAAGAGACAAAC
193 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT-TATTTAAGAGACAAAC
* * * * *
99376 TTTGATTCTATAAAAAAAGGTGGAATGAAAACCTCTTT-TTG-CAGCACCAAAGCGTCAATGTCA
257 TTTGATTCTATAAAAAACGGTGGAA-GAAAAGCTTTTTCTTGTGA-CACCAAAGCATCAATGTCA
* * * * * *
99439 TATATCCTAATGAAGGGACTATGTTCTTGGTTCCTAATCTTTAAAAGAAT-GAGGACTATTGC-A
320 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGG-CTATTACGA
* * * * * * * * *
99502 TGAATCGATGGTTGTCTTATATATGAGATGAACTTTGATTTTAAGGAAAATCAGGCAAGGAATAG
384 -GAATCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
** * * *
99567 ATTTTTACGCTAAAGAAAATCATCAGTA
448 ATTTCCATGCAAAAGAAAATCATCAATA
* * * * *
99595 TCATTTATCCTAACT-TGGAAAATGTGTTTTTAGTGCTTAATCACAAAATGAATAAAGATCATTA
1 TCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
99659 CTAGAATTCATGTTTGTCTCATTTAAGGCACGAGCTTAGACTTTACAAAAATTGGTGGGAAGAAA
65 CTAGAATCCATGTTTGTCTCATTT-CGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * * *
99724 GCCTTTCTTGAGAAACGAAAACGA-CAATATTGTGTATCCTTATGAAAAGACTACGATTATGGTG
129 GCCTTTCTTGCGAAACCAAAGC-ATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTG
* * * * * * * *
99788 CCTAAACTTGAAAAGAATGGTGATTAGTACGACTATACATGTTTGTCTTAGTTAAGAAACAAGCT
193 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * * *
99853 TTGATTTTATCAAAAACAGTGGACAAAAAAGC-TTTGCCTGTGACACCAAAGCTTCAATGTCATG
258 TTGATTCTATAAAAAACGGTGGA-AGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * *
99917 TATCCCAATGAAGGGAATGTGTTCTTAGTGCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
322 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAA
* * * *
99982 TCGATGCTTGTCATATTTGAGGGATGAATTTTGATTTCAAGGAAAATAAGGCAAAGAAAAGATTT
387 TCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
100047 TCATGCAAAAAAAAAATCATTAATA
452 CCATGC-AAAAGAAAATCATCAATA
* * * *
100072 TCATTTATCCTAATGAGAAGAAAGTTTTTATAGTGCCCAATCACAAAATGAATGAAGATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * *
100137 TAGAATCCATGATTGTATCATTTCAGGCATGAACCTACACCTTACAAAAATTGATGGGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTTC-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
**
100202 CCTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
* * * * *
100267 TAGTCCTGAAAAGAATGGGGATTAG--T-ACAATTCACGTTTGTCTTATTTAAGAGGCAAAATTT
195 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *** *
100329 GATTCTATCAAAAACGACAGAAGGAAAAGCTTTTT-TTGTGACACTAAAGCATCAATGTCATGTA
260 GATTCTATAAAAAACGGTGGAA-GAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
* * * ** * * * * *
100393 TACTAATGGAGGGAATGTGTTTTTGAATCCCACTCTTGAAAAGAATGGAGGTTGTAAAGAGAATC
324 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAATC
* *
100458 GATGCTTTTCTTATTGAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGTCAAAGAAAAGATTTC
389 GATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTC
* *
100522 CATGCAAAA-AAAATCAACATTA
453 CATGCAAAAGAAAATCATCAATA
* * * ** *
100544 TCATTTATCCTATTGAGGGGAATGTGTTTATAGTGCCTAATCTCAAAATGGGTGAAGATTATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* ** * * * * *
100609 TGGAATCCACATTTGTCTCTTTTGAGGCATGAACTTAAACTTTGCAAAAATTGGTGGGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTT-CGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
** * * * * * * ** *
100674 TTTTTCTGGCGAAATCGAAGCTTGAATATCGTATATTTTTATAAGAAGACTATG-TCTATGGTGC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGAT-TATGGTGC
* * * * *
100738 CTAATCTTGAATAGAATGGGGATTATTATGACTATTCATGTTTGTCTTATTTAAGGGATAAACTT
194 CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
100803 TGATTCTATAAAAAATGGTGGACAGAAAAGCTTTTTCTTATGACACCAAAGCATCAAGGTCTTGT
259 TGATTCTATAAAAAACGGTGGA-AGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGT
* * * *
100868 ATCCTAAAT-AAGGGAATGTGTACGTGGTTCCCAATCATGAAAAGAATGGAGGCTACTACGAGAA
323 ATCCT-AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAA
* * *
100932 TCGATGATTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
387 TCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
100997 CCATGCAAAAGAAAATCATCAATA
452 CCATGCAAAAGAAAATCATCAATA
** * * *
101021 TCATTTATTGTAATGAGGAGAATGTGTATATAGTGCCTAATCATAAAATGAATGAAGATAATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
101086 TAGAATCCATATTTGTCTCATTTTCGACATGAACTTAGACTTT-CAAAAATTGGTGGGAAGAAAG
66 TAGAATCCATGTTTGTCTCA-TTTCGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* *
101150 -CTTTTTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGGAGA-TAATGATTATGGTGC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT-ATGATTATGGTGC
* * * ** *
101213 CTAACCCTAAAAAGAATGGGGATTAGTATAACTATTCATGTTTACCTTATTTAAGAGGCAAACTT
194 CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* ** ** *
101278 TGATTTTAGCAAAAACGAAGGAAGAAAAAGC-TTTT-TTGCGACACCAAAGCATCAATGTCATGT
259 TGATTCTATAAAAAACGGTGGAAG-AAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGT
* * * * * * *
101341 ATGCTAATGGAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAGTGGAGGCTGTAACGAGAAT
323 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAAT
* * *
101406 CAATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTA
388 CGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
** * *
101471 TGTGCAAAA-ACAACTCATCAGT-
453 CATGCAAAAGA-AAATCATCAATA
* ** * * * *
101493 GCATTTATCCTAACAAGGAGAATGTGTTTATAGTACCAAATCACAAAAGGAATGAAAATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * **
101558 TAGAATCCATGTTTCTCTCATTTCAGGCACGAACTTAGACTTTGC-AAAATTGGTCAGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTTC-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
*
101622 CCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
* * * * * *
101687 TAATCGTGAATAA-AAT-GGGAGTTCGTATGACTATTCTTATTTGTCTTATTTAAGGGATAAACT
195 TAATCCTGAA-AAGAATGGGGA-TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * * * * *
101750 TTGATTCTATCAAAAATGGAGGACAGAAAAGC-TTTTCTTGTGACATCAAAGGATCAGTGCCTTA
258 TTGATTCTATAAAAAACGGTGGA-AGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * * * *
101814 TATCCTAAAGAAAGAAATGTGTTCTTGGTTCCCAATCTTGAAAATAATGGA-GCTGTTATGAAAA
322 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAA
* * * *
101878 TCGATGCTTGTCATATTTATGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGACTT
387 TCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
101943 CCATGCAAAAGAAAATCATCAATA
452 CCATGCAAAAGAAAATCATCAATA
* * ** * *
101967 TCATTTATTCAAATGATTAGAAGGTGTTTATAGTGCCTTATCACAAAATGAATGAAGATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
102032 TAGAGTCCATGTTTGTTTCAATTCAAGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
66 TAGAATCCATGTTTGTCTCATTTC-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* *
102097 CCTTTTTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
* * *
102162 TAATCCTGAAAAGAATGGGGATTGGTATGACTATTCATG-TT-TCTTATTTAAAAGACAAACGTT
195 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * * *
102225 GATTCTATCAAAAACAGCGGAGGGAAAAGCTTTTT-TTGAGACACCAAAGCATTAATGTCTTGTA
260 GATTCTATAAAAAACGGTGGA-AGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
* * *
102289 TCCTAA-GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATC
324 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAATC
* * * * *
102353 GATGCTTGTTTTATTTAA-GGATGAACTTTT-ATTTTAAGGAAAATAGGGCAAATAAAATATTTC
389 GATGCTTATCTTATTTAAGGGATGAA-TTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
* * *
102416 CATGCAAAAGAAAACCATCAGTG
453 CATGCAAAAGAAAATCATCAATA
* * * *
102439 TTATTTATCCTTATGAGGAAAATATGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * * * *
102503 TAGAATCCATGTTTGTCTCATTTCAAGCGCAAACTTGGAGTTTAGAAAATTTAGTGAGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTTC-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* * * * * *
102568 CCTTTCTTGCGAAACCAAAGCATTACTATTGTCTATCC-TAGTAAGAAGACTATGTTTATGGTGC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA-TGAGAAGACTATGATTATGGTGC
* * * ** * ** ** *
102632 TTAATCCTTAAAAGAATGGGGATTAGCATGACTATTTGTATTTGTAATATTTAAGAGTTAAAGTT
194 CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * ** * *
102697 TGATTTTATAAAAAACGGTGGAAAGAAAA-CCTTTTCTTGCGATGCCAAAGCATCAATGTCTTAT
259 TGATTCTATAAAAAACGGTGG-AAGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGT
* * * *
102761 ATCCTAATGAAGGGACTGTGTTCTTCGTTCCCAATCTTGAAAAGAATGGAGGCTGTTGCGAGAAT
323 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAAT
* * * * * * * ** * * *
102826 CAATTCTTATCTTATATATGAGATGAACTTTGATTTCAAGGAAAATTGGGTAAAGAAAATATTTT
388 CGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
* * *
102891 CATGCTAAAGAAAACCATCAGTA
453 CATGCAAAAGAAAATCATCAATA
* ** * *
102914 TCATTTATCCTAACT-AGAAGAACATGTTTATAGTGCCTAATCCCAGAATGAATGAAGATCATTA
1 TCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* ** *
102978 CTAGAATCTATGTTTGTCTCA-TTCGAGGCACGAACTTAGACAATACAAAAATTTGTGGGAAGAA
65 CTAGAATCCATGTTTGTCTCATTTC--GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * * * ** *
103042 AGCCTTTCCTACAAAACCAAAGCATCAATATTGCATATCCTTATTG-GAAGACTATGTTTATGGT
128 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA-TGAGAAGACTATGATTATGGT
* * * *
103106 GCCTAATCCTGAAAAGAATGGTGATTAGTGTAACTATTCAAGTTTGTCTTATTTAAGAGACAAAC
192 GCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * * * *
103171 TTTGATTGTATAAGAAACAGTGGATAGAAAAGC-TTTTCTTATGACACCAAAGCATTAACGTTAT
257 TTTGATTCTATAAAAAACGGTGGA-AGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCAT
* * * * *
103235 GTATCCTAAAGAAGGGAATGTGTTCTTAGTTCCCAATCTTAAAAAGAATGGAGAC-AGTTATGAG
321 GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTA-TTACGAG
* * * * *
103299 AATCGATGCTTATCATATTTGAGGGATAAATTTTGATTTTAAAGAAAAGAAGGCAAAGAAAAGAT
385 AATCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
*
103364 TTTCATGCAAAAGAAAATCATCAATA
450 TTCCATGCAAAAGAAAATCATCAATA
* * *
103390 TCATTTATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAGCATTGC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* *
103455 TAGAATCCATGTTTGTATCATTTCTG---G--C--A-ACTTTACAAAAATTGGTGGGAAGAAAGC
66 TAGAATCCATGTTTGTCTCATTTCGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * * *
103512 CTTTCTTGTG-AACCAAAGCATCAATGTCGTGTATCCTTATGAGAAGACTATGATTACGGTGACT
131 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCT
* * *
103576 AATCCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACATTG
196 AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * **
103641 ATTCTATCAAAAACTGTGGAAGTAAAAGCTTTTT-TTAAGACACCAAAGCATCAATGTCATGTAT
261 ATTCTATAAAAAACGGTGGAAG-AAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
* * * * * * * * ** *
103705 GCGAATTG-AGGGAATGTGTTTTTGTTTCCCACTCTTGAAAAGAATGGAGGTTGTAATAAAAATC
325 CCTAA-TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAATC
* * *
103769 GATGTTTTTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGTCAAAGAAAGGATTTC
389 GATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTC
103833 CATGCAAAA-AAAATCATCAATA
453 CATGCAAAAGAAAATCATCAATA
** * * * * * *
103855 TCATTTATCCTAACAAGGGGAATGGGTTTATAATTCCTAATCACAAAATGAGTGAAGATTATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* *** * *
103920 TAGAATCCATGTTTGTTTCATCGGAGGTACGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAG
66 TAGAATCCATGTTTGTCTCAT-TTCGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* ** * * * * * * *
103985 CCTTTCTTGTGAAATTAAAGCTTGAATATTGTATATCTTTATGAGAAGACTTTGTTTATGGTGCC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
* * * *
104050 TAATCTTGAATAGAATGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGGGA-AAAGCTT
195 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA-CTT
* * * * * * *
104114 TGATTCTATCAAAAATGGTAGATAGAAAAG-GTTTTCTTGTGACACCAAAGCCTCTATGTCTTGT
259 TGATTCTATAAAAAACGGTGGA-AGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGT
* * * * * * *
104178 ATCCTAAAGAAGAGAATGTGCTCTTGGTTCCCAA-CTTTGAAAACAGTGGAGACTATTATGAGAA
323 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATC-TTGAAAAGAATGGAGGCTATTACGAGAA
* * * * **
104242 TCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGTAAATAAAACAAAGAAAAGATTT
387 TCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
104307 CCATGTACAAGAAAATCATCAATT
452 CCATGCAAAAGAAAATCATCAATA
* * * *
104331 TCATTTATTCTAATGAAGAGAATGTGTTTATTGTGCCTAATCAAAAAAATGAATGAAGATCATTA
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTA
* * * * *
104396 CTAGAATCTATGTTTGTCTTATTTTCGGCATGAACTTAGACTTCACAAAAATTGGTGGGAAGAAT
65 CTAGAATCCATGTTTGTCTCA-TTTCGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * *
104461 GCCTTTCTTGCAAAACCAAAGCCTCAATATCGTTTATCCTTATGAGAAGATTATGATTATGGTGC
129 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGC
* *
104526 CTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTT
194 CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * ** *
104591 TGATTCTATCAAAAACAGTGGAAGGAAAAG-TTTTTTTTACGACACCAAAGCATCAGTGTCATGT
259 TGATTCTATAAAAAACGGTGGAA-GAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGT
* * * * * * * *
104655 ATGCTAATGTAGGGAATATGTTTTTTGTTCCTAATCTTGAAAAGAATGGAGGCTGTAACGAGAAT
323 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAAT
* * * * * **
104720 CGATGCTTATCTTATTTAAGGGATGAACTTTAATATTAAGGAAAACAGGGCAAAGAAACTATTTC
388 CGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
* * **
104785 CATGCAAAAAAAAAGCCATCCGTA
453 CATGCAAAAGAAAA-TCATCAATA
* * * *
104809 TCATTTATCCTAATGAGGAAAATGTGTTTA-GGTGCCAAATCACAAAATGAATGAATATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * *
104873 TAGAATCAATGTTTGTCTCATTTCGAGCGCGAACTTAGAGTTAACAAAATTTAGTGAGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTTCG-GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* * * * * *
104938 CCTTTCTTGCGAAACCAAAGCATTAATATCATCTATCCTAATGAGAAGACTATGTTTTTGGTGCC
130 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
* * *
105003 TAATCCTGAAAAGAATGGGGATTAGGATGACTATTAATGTTTGT-TATTTTTAAGAGACAAACTT
195 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT-TATTTAAGAGACAAACTT
* * *
105067 TGATTCTATAAAAAATGGTGGAAAGAAAA-CCTTTTCTTGCT-ACACCAAAGCATCAATGTCATA
259 TGATTCTATAAAAAACGGTGG-AAGAAAAGCTTTTTCTTG-TGACACCAAAGCATCAATGTCATG
* *
105130 TATCCTAATGAAGGGACTGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GAGGACTATTACGGGA
322 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGG-CTATTACGAGA
* ** ** * * **
105194 ATCAATGCTTATCTTATTTGTGAAATAAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAAGATT
386 ATCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT
** * *
105259 TTTATGCTAAAGAAAATCATCAGTA
451 TCCATGCAAAAGAAAATCATCAATA
** * * * *
105284 TCATTTATCCTAACT-AGGAGAATGTGTTTATAGTGTTTAACCAGAAAACGAATGAAGATCATCA
1 TCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * ** * * **
105348 CAAGAATCCATGTTTGTCTCATTTGAGGCGTGAACCTAGACCTTACAAAAATTGGTTTGAAGAAA
65 CTAGAATCCATGTTTGTCTCATTT-CGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * ** * *
105413 GCCCTTCTTGCGAAACCAAAACGTCAATATTATGTATCCTTATGAGAAGACTATGTTTATGGTAC
129 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGC
* * **
105478 CTAAT-CTAGAAAAGAATGGGGATTAGTATAACTATTTATGTTTGTAATATTTAAGAGACAAACT
194 CTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * * *
105542 TTGATTATGTAAAAAACGGTGGAAAGGAAA-CCTTTTCTTGCGGCACCAAAGCATCAATGTCATA
258 TTGATTCTATAAAAAACGGTGG-AAGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * *
105606 TATCCTAATGAAGGGACTGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG-GGACTGTTAGGAGA
322 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGG-CTATTACGAGA
* * **
105670 ATCGATGCTTATCTTATTTGTAA--GATGAACTTTGGGTTTTAAGGAAAATTGGGCAAAGAAAAG
386 ATCGATGCTTATCTTA-TT-TAAGGGATGAA-TTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* * * *
105733 ATTTTCACGCTAGAGAAAATCATCAATA
448 ATTTCCATGCAAAAGAAAATCATCAATA
105761 T
1 T
105762 GTGTTAGGAT
Statistics
Matches: 5132, Mismatches: 922, Indels: 224
0.82 0.15 0.04
Matches are distributed among these distances:
465 94 0.02
466 258 0.05
467 36 0.01
468 1 0.00
469 1 0.00
470 3 0.00
471 178 0.03
472 424 0.08
473 544 0.11
474 476 0.09
475 691 0.13
476 1652 0.32
477 733 0.14
478 41 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
TAGAATCCATGTTTGTCTCATTTCGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCT
AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
ATTCTATAAAAAACGGTGGAAGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATTACGAGAATCGA
TGCTTATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATA
Found at i:106072 original size:13 final size:13
Alignment explanation
Indices: 106050--106079 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
106040 GACATATATC
106050 TACA-TGTATCGA
1 TACATTGTATCGA
106062 TACATTGTATCGA
1 TACATTGTATCGA
106075 TACAT
1 TACAT
106080 AATGCTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:106091 original size:33 final size:32
Alignment explanation
Indices: 106054--106129 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
106044 TATATCTACA
* *
106054 TGTATCGATACATTGTATCGATACATAATGCTT
1 TGTATCGATACATTGTATCAATACAT-ATGCAT
* * *
106087 TGTATTGATACATTGTATCAATACATGTTCAT
1 TGTATCGATACATTGTATCAATACATATGCAT
106119 TGTATCGATAC
1 TGTATCGATAC
106130 GTACTCAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 13 0.35
33 24 0.65
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATTGTATCAATACATATGCAT
Found at i:114847 original size:13 final size:13
Alignment explanation
Indices: 114829--114855 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
114819 ACATAATGCT
114829 TTGTATCGATACA
1 TTGTATCGATACA
114842 TTGTATCGATACA
1 TTGTATCGATACA
114855 T
1 T
114856 GTTCATTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:114891 original size:20 final size:19
Alignment explanation
Indices: 114841--114894 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
114831 GTATCGATAC
* *
114841 ATTGTATCGATACATGTTC
1 ATTGTATCGATACATCTTA
*
114860 ATTGCATCGATACATACTTA
1 ATTGTATCGATACAT-CTTA
*
114880 ATTGTATTGATACAT
1 ATTGTATCGATACAT
114895 GAAACTGGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (19 bp):
ATTGTATCGATACATCTTA
Found at i:114961 original size:13 final size:13
Alignment explanation
Indices: 114940--114969 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
114930 CGATACATGG
*
114940 TACATTGTATCGA
1 TACAATGTATCGA
114953 TACAATGTATCGA
1 TACAATGTATCGA
114966 TACA
1 TACA
114970 TGAAGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:114967 original size:33 final size:32
Alignment explanation
Indices: 114925--114989 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
114915 TATCACTGTT
114925 TGTATCGATACATG-GTACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
114958 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATG-AGAATTGTATCGATACA
114990 CTATACCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:119427 original size:476 final size:474
Alignment explanation
Indices: 118419--125626 Score: 7054
Period size: 476 Copynumber: 15.2 Consensus size: 474
118409 TTCTATCACC
* * * *
118419 AAAGCTTTTCTAGTGACACCAAAGCATCAATGTCTTTTATCCTAATGAATGGAATGTGTTCTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * * * * *
118484 TTCCTAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATACTTGTCATATTTAAGCGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * *
118549 TTTTGATTTTAAAGAAAATAAGGCAAAGAAGAAAAGATTTTCATGCAAAAAAAAATCACCAATAT
131 TTTTGATTTTAAAGAAAATAAGGC--A-AAGAAAAGATTTCCATGC-AAAAAAAATCATCAGTAT
** * * * * * *
118614 TGTTTGTCCTAATAAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAGTGAAGATTATTACT
192 CATTTATCCTAATGAGGAAAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *
118679 ACAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGC
256 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
**
118744 CTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACTAT-TATTATGGTGCC
321 CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT-TTATGGTGCC
* * * * * *
118808 TAGT-CTTAAAAAAATGGGGATTAGTATGACTGTTCATGTTTGTCTTATTTAAGAGATAAACTTT
385 TAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *
118872 GATTCTATCAAAAATGGT-GAAAGGA
450 GATTCTATCAAAAACGGTGGACA-GA
* * * * * * * *
118897 AATGCTTTTTTTGCGAGACCAAAGCATCAATGTCATGTTTGCTAATGGAGGGAATGTGTTTTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * * * * * * * *
118962 TTCCCAATCTTAAAAAGAATGGGGGCTGTAACAAGAATCGATGATTGTCTAATTTTAGGGATTAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * *
119027 CTTTGATTTTAAAGAAAATAGGGCAAAGAGAATATTTCCATGCAAAAGAAAA-CTATCAGTGTCA
131 TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA-AAAATC-ATCAGTATCA
* * *
119091 TTTATCCTTATGAGGAAAATGTGTTAAAGTGCCTAATCACAAAATTAATGAAGATCATTACTA-A
194 TTTATCCTAATGAGGAAAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * *
119155 CATCCATGTTTGTCTCATTTCAGGCACGAACTTAGAGTTTACAAAATTTAGTGAGAAGAAAGGCT
259 -ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GCC
* * *
119220 TTTCTAGTGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
322 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * *
119285 ATCCTGAATAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGGGATAAACTTTGA
387 ATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
119350 TTATATCAAAAACGGTTGACAGA
452 TTCTATCAAAAACGGTGGACAGA
* * *
119373 AAAGCTTTTCTTGTGACATCAAAGCATCATTGTCTTGTATCCTAATGAAGGGAATGTGTTCTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* *
119438 TTCCTAATC-------G-AT---G-C---T-C--G--TC-A---------TATTTAAGTGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* ** * *
119473 TTTTGATTTTTAAGAAAATAAGGTGAAGAAAATATTTCCATG--AAAAAAATCATCAATATCATT
131 TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAGTATCATT
* * * * *
119536 TATCCTAATGAAGAAAATGTATTTATAGTGCCTAATCACAAGAT-AAGTGAAGATTATTACGAGA
196 TATCCTAATGAGGAAAATGT-GTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGA
*
119600 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTT
259 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * * * * *
119665 TCTTGCGAAACCAAGGCACCAATATCGTGTATCCTTGTAAGAAAACTATGATTATGGTGTCTAAT
324 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
119730 CCTAAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATT
389 CCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *
119795 CTTTCAAAAACGGTGGAAAGA
454 CTATCAAAAACGGTGGACAGA
* * * * * * *
119816 AAAGCTTTTTTTGTGACACCAAAGCAACAATGTCATGTATGCGAATGGAGGGAATATCCTT-TTG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-GTTCTTG
** * * * * *
119880 GTTCCC-A-CTTGAAAAGAATGGAGGTTGTAACAAGACTTGATGCTTGTCTTATCTAAGGGATGA
65 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * ** * * *
119943 ATTTTGGTTTT-AAGAAAAATAGGGGGAAGAAAAGATTTTCGTGCCAAAAAAAATCATCAATATC
130 ATTTTGATTTTAAAG-AAAATAAGGCAAAGAAAAGATTTCCATG-CAAAAAAAATCATCAGTATC
* * *
120007 ATTTATCCTAACGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
193 ATTTATCCTAATGAGGAAAATGT-GTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * **
120072 GAATCCATGTTTGTCTCATTTTAGTCATGAACTTAGACTTTACAAAAATTGATAAGAAGAAAGCC
257 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
* * * *
120137 TTTCTTGTGAAACCAAAGCATCAATATCATGTATCCATATGAGAAGGCTATGATTATGGTGCCTA
322 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
120202 GTCTTGAATAGAATAGGGATTAGTTTGACTGTTCACGTTTGTCTTATTTAAGAGACAAACTTTGA
387 ATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
120267 TTCTATCAAAAACGGT-AAAAGGA
452 TTCTATCAAAAACGGTGGACA-GA
* * * * * * *
120290 AATGCTTTTTTTGTGACACCAAAGCATCAATGTCAAGTTTGCTAATGGAGGGAATGTGTTTTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * *
120355 TTCCCAATCTTGAAAAGAATGGAGGCTGTAACGAGAATCGATGCTTGTCTTATTTAAGAGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * * *
120420 CTTTGATTTCAATGAAAAT-AGGCCAAAGAGAATATTTCCATGCAAAAGAAAA-CTATCAGTGTC
131 TTTTGATTTTAAAGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAAA-AAAATC-ATCAGTATC
* *
120483 ATTTATCCTTATGAGGAAAATGTGTT-TGCGTGCCTAATCACAAAATGAATGAAGATCATTACTA
193 ATTTATCCTAATGAGGAAAATGTGTTAT-AGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * ** * * * *
120547 GAATCCATATTTGTCTCATTTTAGGTGCGAACTTAGAATTTACAAAATTTTGTGAGAAGAAAGCC
257 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
* * * *
120612 TTTTTTTGCGAAATCAAAGCATTAATATCACT-TATCC-TAGTGAGAAGACTATGCTTATGGTGC
322 -TTTCTTGCGAAACCAAAGCATCAATATCA-TGTATCCTTA-TGAGAAGACTATGTTTATGGTGC
* * * * * * * * * *
120675 GTAACCCTAAAAAGAACACGGATTAGTACGATTATTCATGTTTCTCTTTTTTAGGAGACAAACTT
384 CTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
**
120740 TGATTCTATCAAAAATAGTGGTACAGA
449 TGATTCTATCAAAAACGGTGG-ACAGA
* * * * *
120767 AAAGCTTTTCTTGTGACACCAAAGCTTCATTGTCTTGTATCCTAAAGAAGGAAATGTGTTCTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
** ** *
120832 TTCCCAATCTTGAAAAGAATGGAGACCATTATAAGAATCGATGCTTGTCATATTTAAGGGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * * *
120897 TTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGTTTTCTATGCAAAAATAATCATCAATATCATT
131 TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAGTATCATT
** * * * * *
120962 TATTATAATGAGTAGAATGTGTGTATAGTCCCTAATCACAGAATGATTGAAGATCATTA-TAAGA
196 TATCCTAATGAGGAAAATGTGT-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGA
* * * *
121026 ATCCATGTTTGTCTCATTTCAAGCACGAACTTAGACTATATAAAAATTGGTGGGAAGAAAGCCTT
259 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * ** *
121091 TCTTGCAAAACTAAAGCATCAATATTGTGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAAT
324 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * *
121156 CTTGAAAAGAATGGGGTTTAGTATGACTATTTATGTTTGTCATATTTAAGAGATAAACTTTGATT
389 CCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *
121221 CTATAAAAAACAG-GG-CAACGA
454 CTATCAAAAACGGTGGAC-A-GA
** * * * * ** *
121242 AATCCTTTTCTTGCGGCACCAAAGCATCAATGTCATATATCCTAATAAAAAGATTGTGTTCTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * **
121307 TACCCAATCTTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTACGTAAGGGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * ** * *
121372 TTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGTTTTCTACACAAAAGAAAAACATCAATATCAT
131 TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAGTATCAT
* * * *
121437 TTATTCTAAT-AAGAAGAATATGTGTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAG
195 TTATCCTAATGAGGAA-AATGTGT-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * ** * * * * *
121501 ATTCCATGCTTGTCTCATTTCACGTGCGAACTTAAAGTTTACAAAATTTAGTGAGAAGAAAGCCT
258 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* *
121566 TTTTTGCGAAACCAAAGCATTAATAT--TGCTTATCC-TAGTGAGAAGACTATGTTTATGGTGCC
323 TTCTTGCGAAACCAAAGCATCAATATCATG--TATCCTTA-TGAGAAGACTATGTTTATGGTGCC
* * * *
121628 TAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTTAAGGGACAAACTTT
385 TAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
121693 GATTCTATCACAAATGGTGGATAGA
450 GATTCTATCAAAAACGGTGGACAGA
* *
121718 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * * * *
121783 TTCCTAATCTTGAAAAGAATGGGGACTGTTATGAGAAACAATGCTTGTCTTATTTGTAA--GATG
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA-TT-TAAGGGATG
* * * * * * *
121846 AACTTCGATTTTAAGGAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTA-C
129 AATTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAGTATC
* * *
121910 TATTCATCCTAACT-A-GAAGAATGTGTTTATAGTGCCTAATCACCAAATAAATGAAGATCATTA
193 -ATTTATCCTAA-TGAGGAA-AATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * * * **
121973 CAAGAATCCATGTTTCTCTCATTTGAGGCGCAAACTTAGACTTTACTAAAATTAGTAAGAAGAAA
254 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * *
122038 GCCTTTCTTGTGAAACCAAAGCATTAATATCATCTATCCTAATGAGAAGATTATGTTTATGGTGC
319 GCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * *
122103 CTAATCCTGAAAAGAATAGGGATTAGTATGACTATTTATGTTTGTCATATTTAAAAGATAAACTT
384 CTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * ** *
122168 TGATTCCATAAAAAACTATGGAAAGA
449 TGATTCTATCAAAAACGGTGGACAGA
* * ** * * * *
122194 AAACCCTTTCTTGTGATGCCAAGGCATCAATGTCATATATCCTAATGAAGGGACTGTGTTCTTAG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * ** *
122259 TTCCCAATCTTGAAAAGAATGGGGACTGTTGCGAGAATCGATGCTTGTCTTATTTGTGAGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* ** * ** * * * *
122324 CTTTGATTTT-AAGAAAAATTGGGTAATCAAAAGATTTTCACGCTAAAGAAATCATCAGTATCAT
131 TTTTGATTTTAAAG-AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAGTATCAT
* * * * * * *
122388 TTATCTTAACT-AGGAGAATGTGTTTGTAGTGCCAAATCATAAAGTGAATGAAGATCATTTCTAG
195 TTATCCTAA-TGAGGAAAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * * *
122452 AATCCATGTTTGTATTATTTCAGGCATGAACTTTGACTTTACAAAAATTGGTGGGGAGAAAGCCA
258 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* ** * * * *
122517 CTCTTGTAAAACCAAAGCATTAATATCATGTCTCCTTATGAGAAGGCTATGATTATGGTGCCTAA
323 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
* * *
122582 TCCTCAAAAGAATGGGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
388 TCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* *
122647 TCTATCAAAAACGGTAGAAAGA
453 TCTATCAAAAACGGTGGACAGA
* * *
122669 AAAGC-TTTCTTTGCGACACCATAGCATCAATGTCATG-----T-AT---GCGAA----TTC--G
1 AAAGCTTTTC-TTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTG
* ** * * * * * * * *
122718 GTTCCC-ACCATTGAAAAGAATGGAGGTTGTAATGAGAATTGTTGCTTTTCTTGTTTAAAGGTTG
65 GTTCCCAATC-TTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
122782 AATATTGATTTTAAGGAAAAT-AGGTCAAAGAAAAGATTTCCAAGCAAAAAAAAATCATCAGTAC
129 AATTTTGATTTTAAAGAAAATAAGG-CAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAGTAT
* * ** * *
122846 CATTTATCCTAATGAGGAGAATGTGTT-TACCGTGCCTAATTACAAAATGTGTTAAGAT-TTTAC
192 CATTTATCCTAATGAGGAAAATGTGTTATA--GTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
122909 TAGAATCCATGTATGTCTCATTAGAGGCACGAACTTAGACTTTGA-AAAAATGGGTAGGAAAAAA
255 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGAAGAAA
* * * * * * *
122973 GCCTTTCTTGTGAAACTAAATCTTGAATATCGTATATCTTTCTGAGAAGACTTTGTTTATGGTAT
319 GCCTTTCTTGCGAAACCAAAGCATCAATATC----ATGTATC--------C-----TTAT-G-A-
** * * * *
123038 GACTATTCATGAAAAAACTATAGTTATGGTGCCTAATCTTGAATAGAATGGGGATTGGTATGACT
364 G---A---A-G-----ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACT
* * *
123103 ATTCATG-TTGTTCTTATTTAAGGGACAAACTTTGATCCTATCAAAAACAGTGGA-AGGA
417 ATTCATGTTTG-TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGACA-GA
* * * * * * *
123161 AAAGCTTTTTTTGCGACACTAAAGCATCAATTTCATGTATCATAAAGAAGGGAATGTATTCTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * * * *
123226 TTCCCAATCTTGAAAAGAATGGAGACTATTACGAAAATTGATGCTTGTCATATTTAAGGGATAAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * *
123291 TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAACAGAAAATCATTAGTGTCAT
131 TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAA-AAAAAATCATCAGTATCAT
** * * * *
123356 TTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAGGACGATCAATACTAGA
195 TTATCCTAATGAGGAAAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * **
123421 ATCCATGTTTGCCTCATTTGAGGCACGAACTTAGAATTTAAAAAAATTGGTGGGAAGAAAAACTT
259 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * ** * ** *
123486 TCTTACGAAACCAAGGCGTGAATATTGTGTATCCTTAGGAGAAGACTATGTTTATTATGCTTAAT
324 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* *
123551 CCTGAAAAGAAT-GGTGATTACTATAACTATTC-TAGTTT-TCCTTATTTAAGAGACAAACTTTG
389 CCTGAAAAGAATAGG-GATTAGTATGACTATTCAT-GTTTGT-CTTATTTAAGAGACAAACTTTG
* *
123613 ATTGTATCAAAAACAGTGGACAGA
451 ATTCTATCAAAAACGGTGGACAGA
* * * ** * **
123637 AAAGCATTTCTTGTGACACCAAAGCATCAAT-TCCTTTTATGTTAACGAAGGGAATGTACTCTT-
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGT-CATGTATCCTAATGAAGGGAATGTGTTCTTG
* * * * * * *
123700 ATTCCCAATCTTGGAAAGAATGGAGACTATTACAACAATCGATGCTTGTCATATTTAAGCGATGA
65 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * *
123765 ATTTTTGATTTTAAAGAAAATAAAGTAAAGAAAAGATTTTCATGCAACAAAAAAATCACCAATAT
130 A-TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGC-A-AAAAAAATCATCAGTAT
* *
123830 CATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGATTATTACT
192 CATTTATCCTAATGAGGAAAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*
123895 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGC
256 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * ** * *
123960 CTTTCTTGTGAAACAAAAGCATCAATATTGTGTATCCTTATGAGAAGACTATGATTATGGTGTCT
321 CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* ** *
124025 AATCCTGAAAAGAATGGGGATTAGTATGGTTATTCACGTTTGTCTTATTTAAGAGACAAACTTTG
386 AATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
** *
124090 ATTCTAAAAAAAAACGATGGA-AGGA
451 ATTCT-ATCAAAAACGGTGGACA-GA
* * * * * * * * * *
124115 AAAGCTTTTTTTGCGACTCTAAAGCAACAATGTCATGTA-CACAAATGGAGGGAAGGTCTTTTTG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC-CTAATGAAGGGAATGTGTTCTTG
* * * *** * * *
124179 ATTCCTAATCTTGAAAAGAATGGAGGCTAAAACGAGAATTGATTCTTGTCTTATTTAAAGGATGA
65 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * ** * * *
124244 GTTTTGGTTTTAAGGAAAATAGGGTGAAGAAAATATTTTCGTGCAAAAAAAATCATCAGTATCAT
130 ATTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAGTATCAT
** * * *
124309 TTATCCTAACAAGGATAATGTGTTTATAGTCCCTAATCACAAAATGAGTGAAGATCATTACTAGA
195 TTATCCTAATGAGGAAAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * *
124374 ATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAAATAGTGGGAAGAAAGCCTT
259 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * *** * * **
124439 TCATGCAAAATCAAAGCATCAAATATCGCATAT-CTTAATGAGAAGACAATGTTTCTAATGCCTA
324 TCTTGCGAAACCAAAGCATC-AATATCATGTATCCTT-ATGAGAAGACTATGTTTATGGTGCCTA
*
124503 ATCCTGAACAGAA-AGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG-GTACAAACTTT
387 ATCCTGAAAAGAATA-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTT
*
124566 GATTTTATCAAAAACGGTGGACAGA
450 GATTCTATCAAAAACGGTGGACAGA
* * * * * * *
124591 AAAGCTTTTCTTTTGACACCAAAGCATCAATGTCTTCTATCTTAAAGAAAGGAATGTGTTTTTGG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
* * * * * *
124656 GTCCTAAGCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAA
66 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * *
124721 TTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCAATATCAT
131 TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAGTATCAT
* * *
124786 TTATTCTAATAAGGAGAATGTGTGTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
195 TTATCCTAATGAGGAAAATGTGT-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * *
124851 ATCCATGTTTCTCCCATTTTAGGCATGAACTTAGATTTTACAAAAATTGGTGGGAAGAAAGCCTT
259 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* ** * * *
124916 TCTTGCGAAACCAAAGCATCAACATTGTGTATCCTTATGAAAAGACTATGATTATGGTGCCTAGT
324 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * ** * *
124981 CTTGAAAAGAATAGGGATTAGTATGATTGTTCACATTTGTCTTATTTGAGAGATAAACTTTGATT
389 CCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** *
125046 CTATCAAAAAAAGTAGA-AGGA
454 CTATCAAAAACGGTGGACA-GA
* * * * * *
125067 AATGC-TTTCTTTGTGATACCAAAGCATCAATGTCATGTTTGCTAATGGAGGGAATGTGTTTTTG
1 AAAGCTTTTC-TTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTG
* * * *
125131 GTTCCCAATCTTGAAAAGAATAGAGGCTGTAACGAGAATCGATGTTTGTCTTATTTAAGGGATGA
65 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * * * *
125196 ACTTTGATTGTGAAGAAAATAAGGCAAAGAGAATATTTCCATGCAAAAAAAAAAAACCATCTGTG
130 ATTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGC----AAAAAAAATCATCAGTA
* * * * * *
125261 TCATTTATCCTTATGAGAAAAATGTGTT-TAAGTGCCTAACCACAAAATAAATAAAGATTATTAC
191 TCATTTATCCTAATGAGGAAAATGTGTTAT-AGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * * * *
125325 GAGAATCCCTGTTTATCTCATTTTAGGCGCGAACTTTGAGTTTAC-AAAATCTAGTGAGAAGAAA
255 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT-TGGTGGGAAGAAA
* * * * *
125389 GCCTTTCTTACGAAACCAAAGCATTAATATCATCTATCCTAATGAGAAGACTATGTTTTATGCTG
319 GCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG-TTTATGGTG
* * * * * * * *
125454 CCTAATCTTGAAAATAGTAAGGATTAGTATGACTATTCATGTTTTTCTTATTTGAGGGATAAACT
383 CCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* **
125519 TTGATTCTATAAAAAATAGTGGACAGA
448 TTGATTCTATCAAAAACGGTGGACAGA
* * * * *
125546 AAAGCTTTTCTTGTGACACCAAAGCATTAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCATAG
1 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
125611 TTCCCAATCTTGAAAA
66 TTCCCAATCTTGAAAA
125627 TATTTGAGGG
Statistics
Matches: 5553, Mismatches: 980, Indels: 393
0.80 0.14 0.06
Matches are distributed among these distances:
441 1 0.00
442 1 0.00
443 222 0.04
444 93 0.02
445 1 0.00
446 47 0.01
448 1 0.00
449 2 0.00
452 1 0.00
455 1 0.00
456 2 0.00
457 1 0.00
458 1 0.00
459 7 0.00
460 157 0.03
461 61 0.01
462 4 0.00
464 6 0.00
465 1 0.00
466 3 0.00
468 2 0.00
469 3 0.00
470 4 0.00
471 45 0.01
472 1 0.00
473 7 0.00
474 423 0.08
475 716 0.13
476 2000 0.36
477 750 0.14
478 360 0.06
479 234 0.04
480 10 0.00
481 1 0.00
482 1 0.00
483 1 0.00
485 1 0.00
486 1 0.00
487 1 0.00
488 1 0.00
489 1 0.00
490 1 0.00
491 7 0.00
492 118 0.02
493 3 0.00
496 1 0.00
497 1 0.00
498 1 0.00
501 4 0.00
504 4 0.00
505 3 0.00
506 2 0.00
507 144 0.03
508 86 0.02
509 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
TTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAGTATCATT
TATCCTAATGAGGAAAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTC
TTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGTGGACAGA
Found at i:128077 original size:474 final size:469
Alignment explanation
Indices: 127185--128607 Score: 1757
Period size: 474 Copynumber: 3.0 Consensus size: 469
127175 GATCATTACT
* * * *
127185 GAAAAAAAGCCTTTCTTGCGAGACCAAAGCCTCAATATCATGTATCCTTATGAGAAGACTATGTT
1 GAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGT-TCCTTATGAGAAGACTATGTT
* * *
127250 TATGGTGTCTAATTCTGAAAAGAATGGGGATTAGTATGACTATTCACGTCTGTTTTATTTAAGGC
65 TATGGTGTCTAA-TCTG-AAAGAATGGGGATTAGTATGACTATTCACATTTGTCTTATTTAAGG-
* * * * * *
127315 ATAAACTTTGATTCTATCAAAAACGGTGGACGAAAAAACTTTTCTTATGACACCAAAGCATCAAC
127 ACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTTATGACACTAAAGCATCAAT
* * *
127380 GTCGTGTATCCTAAAT-AAGGGAATGTGTTCTT-GATCCCAATCTTAAAAAGAATAGAGACTATT
192 GTCATGTATTCT-AATGAAGGGAATGTGTTCTTGGATCCCAATCTTGAAAAGAATA-AGACTATT
* * * * * *
127443 ACGAGAATTGATGCTTGTCATATTTAAGGAATTAATTTTACTTTTGAGGAAAATAAGG-AAAAAA
255 ATGAGAATTGATGCTTGTCATATTTAAGGGATGAATTTTGCTTTTAAGGAAAAT-AGGCAAAGAA
* * * *
127507 AAGTTTTTTATGCAAAAGAAAATCATCAATATGATTTATTCTAATAAGAAGAATGTGTGTATAGT
319 AAGATTTTTATGCAAAA-AAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTGTATAGT
* * * *
127572 GCCTAATCACAAAATGATTGAAGATCATTACTAGAATTCATGTTTGTCTCATTTTAGGCACGAAC
383 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAAC
*
127637 TTAGACTTTTCAAAAATTGGTC
448 TTAGACTTTACAAAAATTGGTC
* *
127659 GAAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATTGTGTGTCCTTATGAGAAGACTAT-TA
1 GAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGT-TCCTTATGAGAAGACTATGT-
* *
127723 TTATGGTGTCTAATCTAGAGAAGAATGGGGATTAGTATGGCTATTCACATTTATCTTATTTAAGA
64 TTATGGTGTCTAATCT-GA-AAGAATGGGGATTAGTATGACTATTCACATTTGTCTTATTTAAG-
* * *
127788 GACAAACTTTGATTCTATCAAAGACGATGGAAGGAAAAGCTTTT-TT-TGCAACACTAAAGCAAC
126 GACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTTATG--ACACTAAAGCATC
* * * * *
127851 AATGTCATGTATTCTAATGGAGGGAATGTCTTTTTGGATCCCAATCTTGAAAAGAATGAAGGCTG
189 AATGTCATGTATTCTAATGAAGGGAATGTGTTCTTGGATCCCAATCTTGAAAAGAAT-AAGACTA
* * * * *
127916 TAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGGTTTTAAGGAAAATAGGCGAAGA
253 TTATGAGAATTGATGCTTGTCATATTTAAGGGATGAATTTTGCTTTTAAGGAAAATAGGCAAAGA
* * * *
127981 AAAGATTTTTGTGCAAAAAAAATCATCAATCTCATTTATCCTAGTGAGGAGAATGTGCT-TATAG
318 AAAGATTTTTATGCAAAAAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTG-TGTATAG
* * *
128045 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAG
382 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAA
* * * *
128110 CTTAGACATCACAAAAATTAGTG
447 CTTAGACTTTACAAAAATTGGTC
* * * *
128133 GGAAGAAAGCCTTTCTTACGAAACCAAAGCTTCAATATCGTGTACCTTTATGAGAAGACTATGTT
1 GAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTTCC-TTATGAGAAGACTATGTT
* * * **
128198 TGTGGTGCCTATTCCTGAATAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATTTAAGGG
65 TATGGTGTCTAAT-CTGAA-AGAATGGGGATTAGTATGACTATTCACATTTGTCTTATTTAA-GG
* *
128263 ACAAACTTTGATTCTATCAAAAATGGTGGTCA-GAAAAGCTTTTCTTATGACACTAAAGCATCAA
127 ACAAACTTTGATTCTATCAAAAACGGTGG-AAGGAAAAGCTTTTCTTATGACACTAAAGCATCAA
* * * * * *
128327 TGTCATGT-TTCCTAAAGAAAGAAATGTGTTCTTGGGTCTCAATCTTGAAAAGAATCAAGATTAT
191 TGTCATGTATT-CTAATGAAGGGAATGTGTTCTTGGATCCCAATCTTGAAAAGAAT-AAGACTAT
* * *
128391 TATGAGAATTGGTGCTTGTCATATTTAAGGGATGAATTTTGTTTTTAAGGAAAACAAGGCAAAGA
254 TATGAGAATTGATGCTTGTCATATTTAAGGGATGAATTTTGCTTTTAAGGAAAA-TAGGCAAAGA
* *
128456 AAAGATTTTTATGCCAAAGAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTGTATAA
318 AAAGATTTTTATG-CAAAAAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTGTATAG
* * * * * *
128521 TGTCTTATCGCAAAATGAATGAAGATCATTACTAAAATCCATGTTTCTCTCATCTCAGGCATGAA
382 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAA
*
128586 CTTAGAATTTACAAAAATTGGT
447 CTTAGACTTTACAAAAATTGGT
128608 GGGAAGAATG
Statistics
Matches: 811, Mismatches: 115, Indels: 44
0.84 0.12 0.05
Matches are distributed among these distances:
472 2 0.00
473 15 0.02
474 553 0.68
475 120 0.15
476 121 0.15
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (469 bp):
GAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTTCCTTATGAGAAGACTATGTTT
ATGGTGTCTAATCTGAAAGAATGGGGATTAGTATGACTATTCACATTTGTCTTATTTAAGGACAA
ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTTATGACACTAAAGCATCAATGTCA
TGTATTCTAATGAAGGGAATGTGTTCTTGGATCCCAATCTTGAAAAGAATAAGACTATTATGAGA
ATTGATGCTTGTCATATTTAAGGGATGAATTTTGCTTTTAAGGAAAATAGGCAAAGAAAAGATTT
TTATGCAAAAAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTGTATAGTGCCTAATC
ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTT
TACAAAAATTGGTC
Found at i:133937 original size:476 final size:471
Alignment explanation
Indices: 131781--134118 Score: 2566
Period size: 476 Copynumber: 4.9 Consensus size: 471
131771 AAATCATTAC
* * * * * ** *
131781 TAGAATTTACAAGAATTGGTGGGAAGAAAGCCTTTGTTGCGAAATCAATGCATTAATATTATGTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTA
* * * * * *
131846 TCCTTCTAAAAAGACTATGATTATGGTGCCTAGTCTTGAAAAAATGGGGATTAGTATGACTATTC
66 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAGAATGGGGATTAGTATGACTATTC
* *
131911 ACGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAA-TGGTGGAAGGAAAAGCTTTTT
131 ACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGT-GTGGAA-GAAAAGCTTTTC
* * * * *
131975 TTACGACACCAAAGCATCAATGTCATGT-TCGCTAATAGAGGGAATGTGTTTTTGGTTCCTAATC
194 TTGCGACACCAAAGCATCAATGTCTTGTATC-CTAAGA-AGGGAATGTGTTCTTGGTTCCCAATC
* * * * * *
132039 TTAAAAAGAATGAGGGCTATAACGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTT
257 TTGAAAAGAATGA-GACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTT
* * * *
132104 TAAGGAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTAGTGTCATTTATCCTAA
321 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT-CTAA
* * * *
132169 CTTAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGATTGACGATCATTACTAGAATCTATGT
385 -TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGT
** **
132234 TTATCTCATTTTGGGCATGAACT
449 TTATCTCATTTCAGGCACAAACT
* * *
132257 TAGAATTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTA
** ** * * * **
132322 TCCTGCTGAGAAGACTATGTTTATGGCACCTAATCCTGAAAATAATTGGCTTTAGTATGACTATT
66 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTG-AAAGAATGGGGATTAGTATGACTATT
* *
132387 CATGTTTGTCTTATTTAAGATACAAACTTTGATTCTATCAAAAACG-GTGGACAGAAAAGCTTTT
130 CACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GTGTGGA-AGAAAAGCTTTT
* *
132451 CTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTTCCAATC
193 CTTGCGACACCAAAGCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATC
* * * * *
132516 TTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCATTTTTAAGGAATGAATTTTAATTT
257 TTGAAAAGAAT-GAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTT
* * * *
132581 TAAGGAAAATAAGGCAAAGAAAAGTTTTCTATGCAAAAGAAAATCATCAATATGATTTATTCTAA
321 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA-TCTAA
* * * * * * *
132646 TAAGAAGAATGTGTGTATAGTACCTAATCATAAAATGATTGAAGA-CTATTACTAGAATCAATG-
385 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCTATGT
*
132709 TT-T-GC----C--GCACAAACT
449 TTATCTCATTTCAGGCACAAACT
* * *
132724 TAGACTTTACAAAAATTGGTGGGAACAAAGCCATTCTTACGAAACCAAAGCATTAATATCGTCTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTA
* * * * * *
132789 TACTTATGAAAAGACTATGATTT-T-GTGCCTAGTCCTGAAAGGAATGGGGATTAGTGTGACTTT
66 TCCTTATGAGAAGACTATG-TTTATGGTGCCTAATCTTGAAA-GAATGGGGATTAGTATGACTAT
** *
132852 TCACGTTTGTCGAATTTAAGAGTCAAACTTTGATTCTATCAAAAACG-GTGGAAGGAAAAGC-TT
129 TCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GTGTGGAA-GAAAAGCTTT
* * * * * * * *
132915 T-TTGGGACACCAAAGCATTAATGTCATCTTTACTAATGGAGGGGAA-GTGTTTTTGGTTCCCAA
192 TCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA--GAAGGGAATGTGTTCTTGGTTCCCAA
** * * * *
132978 TCTTGAAAAGAATGA-AGGGTATAATGAGAATCGATGCTTATCTTACTTAAGGGATGAACTTTGA
255 TCTTGAAAAGAATGAGACTGT-T-ATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA
* * * * *
133042 TTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGTAAAAGAAAACCATCAGTTTCATTTATCC
318 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT-C
* * * * *
133107 TTATGATGAAAATGTGTTTA-AGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCAT
382 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAT
** * *
133171 GTTTATCT-ATTTCAGGTGCGAAGT
447 GTTTATCTCATTTCAGGCACAAACT
* * * * *
133195 TAGAGTTTACAAAATTTAGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATACCGTCTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTA
* * *
133260 TCCTAATGAGAAGTCTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAATACT
66 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTG-AAAGAATGGGGATTAGTATGACTA-T
* * * * * *
133325 T-ATGTTTGTCATATTTAAGAGACAAACTTTGTTTCTAT-AAAAAATGTTAGAAAGAAAACCTTT
129 TCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGTG-T-GGAAGAAAAGCTTT
* * * **
133388 TCTTGCGACACCAAATCATCAATGTCTTGCATCCAAAAGAAAAGAATGTGTTCTTGGTTCCCAAT
192 TCTTGCGACACCAAAGCATCAATGTCTTGTATCC-TAAGAAGGGAATGTGTTCTTGGTTCCCAAT
* * * * *
133453 CTTGAAAAGAATAGAGATTGTTATGAGAATTGATGCTTGCCATATTTAAGGTATAAATTTTGATT
256 CTTGAAAAGAAT-GAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
* *
133518 TTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCATA
320 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-TA
* * * *
133583 ATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTTCTGGAATCTATTT
384 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGT
* *
133648 TTGTCTCATTTCAAGCACAAACT
449 TTATCTCATTTCAGGCACAAACT
* * * * * * *
133671 TATACTTTGCAAAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATTGTGTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTA
* * * * *
133736 TCTTTATGAGAAGACTATGTTTATGATGCCTAAT-TTGAATAGAGTGGGAATTAGTATGACTTTT
66 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA-AGAATGGGGATTAGTATGACTATT
* * * * ** * *
133800 CAGGTTTGCCTTATATAACAGACAAACAATGATTCTGTCAAAAAGTAGTGGACAGAGAAGCTTTT
130 CACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGT-GTGGA-AGAAAAGCTTTT
** * ** * * *
133865 CTTGTTACACCAAGGTGTCAGTGTCTTGTATCCTAGAGAAGGGAATGTGCTCTTGGTTGCCAATC
193 CTTGCGACACCAAAGCATCAATGTCTTGTATCCTA-AGAAGGGAATGTGTTCTTGGTTCCCAATC
133930 TTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTT
257 TTGAAAAGAAT-GAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTT
* * **
133995 TAAGGAAAATAAGGTAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATTCTAA
321 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA-TCTAA
* * *
134060 TGAGGAGAATGTGTTTATAGTGCCTAATGACAAAAGGAATGAAGATAATTACTAGAATC
385 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
134119 CATGAGGAGA
Statistics
Matches: 1553, Mismatches: 259, Indels: 100
0.81 0.14 0.05
Matches are distributed among these distances:
462 2 0.00
463 44 0.03
464 159 0.10
465 15 0.01
466 80 0.05
467 82 0.05
468 3 0.00
469 1 0.00
470 3 0.00
471 84 0.05
472 68 0.04
473 18 0.01
474 164 0.11
475 105 0.07
476 471 0.30
477 245 0.16
478 9 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (471 bp):
TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTA
TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAGAATGGGGATTAGTATGACTATTC
ACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGTGTGGAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATGTCTTGTATCCTAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGA
AAAGAATGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGG
AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTAATGAGGA
GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTATCTC
ATTTCAGGCACAAACT
Found at i:134128 original size:61 final size:61
Alignment explanation
Indices: 134059--134183 Score: 241
Period size: 61 Copynumber: 2.0 Consensus size: 61
134049 ATTTATTCTA
*
134059 ATGAGGAGAATGTGTTTATAGTGCCTAATGACAAAAGGAATGAAGATAATTACTAGAATCC
1 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATAATTACTAGAATCC
134120 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATAATTACTAGAATCC
1 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATAATTACTAGAATCC
134181 ATG
1 ATG
134184 TTTGTCTCAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.26
Consensus pattern (61 bp):
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATAATTACTAGAATCC
Found at i:134500 original size:208 final size:208
Alignment explanation
Indices: 134134--134548 Score: 591
Period size: 208 Copynumber: 2.0 Consensus size: 208
134124 GGAGAATGTG
* * * **
134134 TTTATAGTGCCTAATCACAAAAGGAATGAAGATAATTACTAGAATCCATGTTTGTCTCATTTTCG
1 TTTATAGTGCCTAATCACAAAAGAAACGAAGATAATTACTAGAATCCATATTTGTCTCATTTGAG
* *
134199 ACACGAACTTAGACTTTACAAAAATTAAAGGGAAGAAAGCCTTTCTTGCAAAACTAAAGCCTCAA
66 ACACGAACTTAGACTTTACAAAAATTAAAGAGAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAA
* * **
134264 TATCGTGTATCCTTATGAGAAGACTATGATTATGGCGCCTAATCTTGAAAA-AGATGGGGATTAG
131 TATCGTGTATCCTTATAAGAAAACTATGATTATGGCGCCTAATCTTGAAAAGA-ATAAGGATTAG
134328 TATAACTATTCACC
195 TATAACTATTCACC
* *
134342 TTTATAGTGCCTAATCACAAAATAAACGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAAGAAACGAAGATAATTACTAGAATCCATATTTGTCTCATTTGAG
* * *** *
134407 GCACGAACTTAGGCTTTACAAAAATTGGTGAGAAGAAAGCTTTTCTTGCAAAA-TCAAAGCATCA
66 ACACGAACTTAGACTTTACAAAAATTAAAGAGAAGAAAGCCTTTCTTGCAAAACT-AAAGCATCA
* * *
134471 ATGTTGTGTATCCTTATAAGAAAACTATGATTATGGTGCCTAATCTTGAAAAGAATAAGGATTAG
130 ATATCGTGTATCCTTATAAGAAAACTATGATTATGGCGCCTAATCTTGAAAAGAATAAGGATTAG
*
134536 TATGACTATTCAC
195 TATAACTATTCAC
134549 ATTTGTCTTA
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
207 1 0.01
208 180 0.99
209 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (208 bp):
TTTATAGTGCCTAATCACAAAAGAAACGAAGATAATTACTAGAATCCATATTTGTCTCATTTGAG
ACACGAACTTAGACTTTACAAAAATTAAAGAGAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAA
TATCGTGTATCCTTATAAGAAAACTATGATTATGGCGCCTAATCTTGAAAAGAATAAGGATTAGT
ATAACTATTCACC
Found at i:138231 original size:476 final size:475
Alignment explanation
Indices: 137317--144685 Score: 7467
Period size: 476 Copynumber: 15.6 Consensus size: 475
137307 GAAGACTATG
*
137317 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * *
137382 CGGTGGAATGAAAAGCCTTTT-TTGCGACACCAAAGCATCAATGTCATATATGCTAATGGAGGGA
66 CGATGGAA-GAAAAG-CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGA
* ** * * * *
137446 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAA---AGGTTGTAAAGAGAATCAATGCTTGTCTTAT
129 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* * * * *
137508 TTAAAGGATGAATTTTTATTTTAAGGAAAATAGGGCGAAGAATAGATTTTCATGCAAAAGAAAAT
194 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * *
137573 CATCAATATCATTTGTCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAGT-ATA
259 CATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-A
* * * * *
137637 GATCATT-TTTGAAATCCATGTTTGTCTCATTTTAGGCACGAGCTTAGACTTTACGAAAATTGGT
323 GATCATTACTAG-AATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGT
* * *** * *
137701 TGGAAGAAAGGCTTTCTTGCGAAACCAAAGTGCCAATATCGTGTATCTTTATGAGAAGACTATGT
387 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* * * *
137766 TTGTGGTACCTAATCCTTAATAGA
452 TTATGGTGCCTAATCCTGAAAAGA
* * * * * *
137790 ATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGGGATAAACTTTAATTCTACCAGAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * *
137855 CGATGGAGAGAAAAGCTTTTCTTATGACATCAAAGCATCAATGTCTTATATCATAAAGAAGGGAA
66 CGATGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAA
* *
137920 TGTGTTCTTGGTTCCCAATCTTGAAAA-ACATAGAGACTGTTGCGAGAATCGATGCTTGTCATAT
130 TGTGTTCTTGGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
*
137984 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAAT
194 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * **
138049 CATCATTATCATTTGTCCTAATAAGGAAAATGTGCCTATAGTGCCTAATCACAAAATGAAT-ATA
259 CATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-A
*
138113 GATCATTACT-GAAATCCATGTTTGTCTAATTTCAGGCACGAACTTAGACTTTACAAAAATTGGT
323 GATCATTACTAG-AATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGT
* ** * *
138177 GGGAAGAAAGACTTTCTTGCGAAACCAAAGTGTCAATATTATGTATGCTTATGAGAAGACTATGT
387 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* *
138242 TTATGATGCCTAACCCTGAAAAGA
452 TTATGGTGCCTAATCCTGAAAAGA
* * ** * *
138266 ATAGGTATTAGTATGACTATTCACATTTGTTTTATTTAAGAGGCAAACTTTGATTCTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * ** * *
138331 CGGTAGAAGGAAAAGCTTTTTTTGTGACACTAAACCATCTGTGTCATGTA-CGCTAACGGAGGGA
66 CGATGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC-CTAAAGAAGGGA
* * * * * * *
138395 ATCTGTTTTTGGTTTCCAATCTTGAAAAGAATGAAGGCTGTAACGAGAATCGATACTTGT-ATTA
129 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCA-TA
* * * * *
138459 TTCAAGGGATGAATATTT-ATTTTAGGGAAAATAAGGCGAAGAAAAGATATT-CGTGCAAAA-AA
193 TTTAAGGGATGAAT-TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT-TTCCATGCAAAAGAA
* * * * * *
138521 AAGTCATTAGTATCATTTATCCTAACGAGGAGAATGCGTTTATAATGCCTAATCACAAAATGAAT
256 AA-TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* ** * * * *
138586 GAAGCTCATTACTAGAATATATGTTTGTCTCTTTTGAGGCACAAACTTAGACTTTGCAAAAATTG
320 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * * *
138651 GGGGGAAGAAAGCCTTTCATGCGAAACCAAAGTGTTAATATCTTGTATCCTTGTGAGAAAACTAT
385 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAT
*
138716 GTTTATGGTGCCTAATCCTGAATAGA
450 GTTTATGGTGCCTAATCCTGAAAAGA
** * * * * *
138742 ATATGGATTTGTATGACCATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATGAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
138807 C-AGTGGACAAAAAAGCTTTTCTTGTGACACCAAAGGATCAATGACTTGCATCTTAAA-AGGGGA
66 CGA-TGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGA
* * *
138870 ATGTG--C-----T--C-A---TGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCATAT
129 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* * * * * *
138922 TTAAGGGATGAATTTTGATTCTAAGGAAGATAAGGCAATGAACAGATTTCCATGTAAAAGAAAAT
194 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * ** * * *
138987 CATCAATATCCTTTTTTCTAACAAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGAATAAAA
259 CATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAA
* * *
139052 AATCA-T--T---A--CATGTTTCTCTCATTTCAGGCACGAACTTATACTTTACAAAAATTGGTG
323 GATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * *
139109 GGAAGAAAGCTTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAAAACTATGAT
388 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTT
* * *
139174 TATGGTGCCTAATCTTGGAATGA
453 TATGGTGCCTAATCCTGAAAAGA
* * *
139197 AAGGGGATTAGTATAACTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * *
139262 CGGTGGAAGGAAATGCTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGGACGGAA
66 CGATGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAA
* * ** * * ** *
139327 TGTGTTTTTGGTTCCCAATCTTGAATAGAATGGAGGTTGTAATGAGAATTAATGCTTGTCTTA-T
130 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* * * * * *
139391 TATGGGATGAACTTTT-ATTTTAATGAAAATAGGGCAAAGAGAATATTTTCACGCAAAAGAAAA-
195 TAAGGGATGAA-TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * ** * * * * *
139454 CAATCAGTGTTGTTTATCCTTATGAGAAAAATTTGTTTA-AGTGCCCAATCAAAAAATGAATGAA
259 C-ATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * * * *
139518 GATCATTACGAGAATCCATATTTATCTCATTTCTGATGCA--AACTTAGAGTTTACAAAATTTAG
323 GATCATTACTAGAATCCATGTTTGTCTCATTTC--AGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * * * * *
139581 TGAGAAGAAAGCCTTTCTTGTGAAAACAAAGTATTAATATCGTCTATCCTAATAAGAAGACTATA
386 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG
* *
139646 TTCACGGTGCCTAATCCTGAAAATG-
451 TTTATGGTGCCTAATCCTGAAAA-GA
* * * * *
139671 ACGGGGATTAGTATAACTATTTATGTTTGTCATATTTAAGAGACAAACTTTGA-TCTTATAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-TATCAAAA
** * * * *
139735 ATAATGGAAAGAAAACCTTTTCTT-TCGACACCAAAGCATCAATGTCATATATCCTCACA-AAGA
65 ACGATGG-AAGAAAAGCTTTTCTTGT-GACACCAAAGCATCAATGTCATGTATCCT-AAAGAAGG
* * * * ** *
139798 GACTATGTTCTCGGTTCCTAATCTTGAAAAGAATAGG-GACTGTTGTGAGAATCGATGCTTGTAA
127 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGTCA
* * * * * * * * ** *
139862 TATTTATGAGATGAACTTTGACTATAAGGAAAATTGGGCAAAGAAAATATTTTCAAACTAAAGAA
191 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * *
139927 AATCATCACTATCGTTTATCCTAACT-AGGAGAATGAGTTTATAGTGCCTAATCACAAAATGAAT
256 AATCATCAATATCATTTATCCTAA-TGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * * **
139991 GAAAATCTTTACTAGAATCCGTGTTTGTCTCATTTGAGGTAC-AAATTCA-ATCATTGTAAAAAT
320 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTT-AGA-CTTTACAAAAAT
* * * * * * * ** *
140054 TAGTAGGAGGAAAGGCATTCTAGCGAAACCAAA-CTGTCAATATTGTGTATCCTTATGAGAAAAC
383 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC-ATCAATATCATGTATCCTTATGAGAAGAC
* *
140118 TATGATTATAGTGCCTAATCCTGAAAAGA
447 TATGTTTATGGTGCCTAATCCTGAAAAGA
* *
140147 ATGGGGATTAGTATGACTATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * * * *
140212 CGGTGGAAGGAAAAGCTTTT-TGCGCGACACCAAAGCATTAATGTCATGCATGCTAATGGAGGAA
66 CGATGGAA-GAAAAGCTTTTCT-TGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGA
* * * * *
140276 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGATG-CTGTAACGAGAATAGATGCTTGCCTTA
129 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GACTGTTACGAGAATCGATGCTTGTCATA
* * * * * *
140340 TTTAAAGGATGAATTTTGATTTTAAGAAAAATAGGGCCAAA-AAAATATTTTCGTGCAAAA-AGA
193 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-CAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * * * * *
140403 ATCATCAGTATCGTTTATCATAACGAGGAGAATGCGTTTATTGTGCCTAATCACAAAAAGAATAA
257 ATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
*
140468 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
322 AGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGT
*
140533 GGGAAGAAAGCCTTT-TTG-GAAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATG
387 GGGAAGAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG
* *
140596 TTTTTGTTGCCTAATCCT-AAATAGA
451 TTTATGGTGCCTAATCCTGAAA-AGA
* *
140621 ATGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATAT-TATCAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAAAA
* * * *
140685 AC-AGTGGACAAAAAAGCTTTTCTTGTGACTCCAAAGCATTAATGTCTTGTATCCTAAAGAAGGG
65 ACGA-TGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGG
*
140749 AATGTGCTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCAT
128 AATGTG-TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCAT
* * * ** * * * *
140813 TTTTAGGGGGTGAATTTTGATTTTAAGGAAAATAAAGTAAA-AAAAGGATTTCCCTGTAGAAGAA
192 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-GATTTCCATGCAAAAGAA
* *
140877 AATTATCAATATCATTTATTCC-AATGA-GAAGGATGTGTTTATAGTGCCTAATCACAAAATGAA
256 AATCATCAATATCATTTA-TCCTAATGAGGAA-AATGTGTTTATAGTGCCTAATCACAAAATGAA
* *
140940 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTCTC-GGCACGAACTTAAACTTTACAAATAT
319 TGAAGATCATTACTAGAATCCATGTTTGTCTCATT-TCAGGCACGAACTTAGACTTTACAAAAAT
* * * *
141004 TGGAGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACT
383 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* **
141069 ATGATTATGGTGCCTAGCCCTGAAAAGA
448 ATGTTTATGGTGCCTAATCCTGAAAAGA
* * * *
141097 ATGGGGATTAGTATGACCATTCAAGTTTGTATTATTTAAGAGACAAACTTTGATTCTATAAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAA
* * * * *
141162 AC-AGTGGAACGAAAAGC-TTTATTGCGACACCAAAGCATCAATGTCATGTATGCGAATGAAGGG
65 ACGA-TGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGG
* ** * * * * * * * *
141225 AATGTGTTTTTGGTTCTTAACCTTGAAAAGAATCGAGGCTATAACAAGAATCGATGCATGTCTTA
128 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * * * * * * *
141290 TTTAAGGAATGAACTTTAATATTAAGGAAAACAGGGCAAAGAAAATATTTCTATGCAAAAGAACA
193 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
141355 CCATCTATGTCATTTATCCTAATGAGGAAAATGTGTTTAT-GTGCATAATTAGAAAATGAATGAA
258 TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * * * * * *
141419 TATCATTACTAGAATCCAAGTTTCTCTCATTTCAGGCGCGTACTTAGAGTTTACAAAATTTAGTA
323 GATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTG
** * * * * * * *
141484 AAAAGAAAGCCTTTCTCGCAAAACCAAAGCATTAATATCGTCTATCCTAAAGAGAAGACTATGTT
388 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTT
* **
141549 TATGGTGCGTAATCCCAAAAAGA
453 TATGGTGCCTAATCCTGAAAAGA
* * * * * *
141572 ATAGGGATTATTATGACTATTTATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATAAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
141637 CGATGGAAAGAAAACCTTTTCTTGCGGCACCAAAGCATCAATGTCATATATCCTAATGAAGAGAT
66 CGATGG-AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAA
* * * * * * * **
141702 TGCGTTCTTGGTTCCTAATCTTGAAAGGAATGGGGACTGTTGCAAGAATCAATGCTTGTTTTATT
130 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* * * * * * * * *
141767 TATGAGATGAACTTTGACTTTACGAAAAATTGGGCAAAGAAAAGATTTCCATACTAAAGAAAATC
195 TAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * *
141832 ATCAGTTTCATTTATCCTAACT-A-GAAGAATGTGTTTATAATGCCTAATCCCAAAATGAATAAA
260 ATCAATATCATTTATCCTAA-TGAGGAA-AATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * *
141895 GATCATTACTAGAATCCATGTTTGTCTTATTTTC-GGTACGAACTTAGACTTTACAAAAATTGGA
323 GATCATTACTAGAATCCATGTTTGTCTCA-TTTCAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * *
141959 AGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAAAAGACTATGA
387 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* *
142024 TTATGGTGCCTAGTCCTGAAAATA
452 TTATGGTGCCTAATCCTGAAAAGA
* * *
142048 ATGGGGATTAGTATGACTATTCACGTTTGTATTATTTAAGAGACAAACTTTGGTTCTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * *
142113 -TAGTGGAAAGAAAAGCTTTTTTTGCT-ACACCAAAGCAACAATGTCATGTATGCTAATGAAGGG
66 CGA-TGG-AAGAAAAGCTTTTCTTG-TGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGG
* * * * * * * * * *
142176 ATTGTGTTTTTGGTTTCCAACCTTGAAAAAAATGGAGGCTATAATGAGAATCGATGCTTGTCTTA
128 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * *
142241 TTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAG--AA
193 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* *
142304 TC--C-GTGTCATTTATCCTAATGAGGAAAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAA
258 TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * *
142365 GATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCGCGAACTTAGAGTTTAC-AAAATGTAGT
323 GATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAAT-TGGT
* * * * * * ** * * *
142429 GAGAAAAAAGCCTTTTTTGCAAAACCAAAGCATTAATGTCATCCATCCTAATGAGAAAACTAGGT
387 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* *
142494 TTATGCTGCCTAATCTTGAAAAGA
452 TTATGGTGCCTAATCCTGAAAAGA
* *
142518 ATGGGGATTAGTATGACTATTTATGTTTGTCATATTTAAGAGACAAACTTTGATTCTAT-AAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
142582 -TAGTAGAAAGAAAACCTTTTCTTG-GAGCTCCAAAGCATCAACGTCATATATCCTAATGAAGGG
66 CGA-T-GGAAGAAAAGCTTTTCTTGTGA-CACCAAAGCATCAATGTCATGTATCCTAAAGAAGGG
* * * * *
142645 -ATGTTTTCTTGGTTCCCAATCTTGAAAA-AAT-GAGGACTATTATGAGAATCAATGCTTGTCTT
128 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GACTGTTACGAGAATCGATGCTTGTCAT
**** * * * * * *
142707 ATTTATCAAATGAACTTTGATTTTAAGAAAAATTGGACAAAGAAAAGATTTACACG-ATAAAGAA
192 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA-AAAGAA
* * *
142771 AATCATTAGTATCATTTATCCAAACT-A-GAAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
256 AATCATCAATATCATTTATCCTAA-TGAGGAA-AATGTGTTTATAGTGCCTAATCACAAAATGAA
** * * * * *
142834 TGAAGATTTTTATTAGAATCCATTTTTGTCTCATTTGAGGCATGAACTTAGACTTTTCAAAAATT
319 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATT
* ** * * ** * *
142899 GGTGGGAA-AAGAGGCTTTCTTGTAAAACTAAAGCATCAATGTTGTGTATCCTTATAAGAAAACT
384 GGTGGGAAGAA-AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* *
142963 ATGATTATGGTGCCTAATCCTAAAAAGA
448 ATGTTTATGGTGCCTAATCCTGAAAAGA
* ** * ** *
142991 ATAGGGATTAGTATGACTATTCACATTTGTTTTACGTAAGAGACAAACTTTGATTCTATCAAAAG
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
143056 CGGTAGAAGGAAAAGCTTTTTTTGCGACACCAAACCATCAATGTCATGTATGCTAATGGAA-GGA
66 CGATGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGA
* * * * * * *
143120 ATGTGTTTTTGGTTCCCAATCTTGAAAAAGAGTGGAGGCTGTAACAAGAATCGATACTTGTCTTA
129 ATGTGTTCTTGGTTCCCAATCTTG-AAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * * *
143185 TTTAAGCGATGAATTTTGATTTTAAGGAAAATAAGGCGAAGAAAA-ATTTTCATGCAAAA-AAAA
193 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * *
143248 TCATCAGTATCATCTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
258 TCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * * * * *
143313 GCTCATTGCTAGAATCTATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTACAAAAATTGGTC
323 GATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * **
143378 AGAAGAAAGCCTTTCCTATGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC--TGTT
388 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTT
*
143441 TATGGTGCCTAATACT-AAATAGA
453 TATGGTGCCTAATCCTGAAA-AGA
* * * *
143464 ATGGGGATTAGTATGACCATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCCATGAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *
143529 C-AGTAGACAAAAAAGCTTTTCTTGTGACACCAAATG-ATCAATGTCTTGTATCCTAATAG--GG
66 CGA-TGGA-AGAAAAGCTTTTCTTGTGACACCAAA-GCATCAATGTCATGTATCCTAA-AGAAGG
* * * * * ** * **
143590 GAATGCGCTCTTAGTTCCTAATATTGAAAAGAATGGAGGTTGTTACAAGAATCGATGCTCATCAT
127 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCAT
* * * * * * ** *
143655 ATTTAAAGGAAGAATTTTGATTCTAAGTAAAATAAGGCAAAGAAAAGATTTTCATATAAATG-AA
192 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
143719 ATCATCAATATCATTTATTCTAATGAGCG-AAATGTGTTTATAGTGCCTAATCACAAAATGAATA
257 ATCATCAATATCATTTATCCTAATGAG-GAAAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
143783 AAGAACATTACTAGAATCCATGTTTGTCTCATTACAAGCATGAACTTAGACTTTACAAAAATTAG
321 AAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGG
* ** *
143848 TGGGAAGAAAGTCTTTCTTGCGAAACCAAAGTGTCAATATCATGTATCTTTATGAGGAA-ACTAT
386 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGA-GAAGACTAT
* *
143912 GTTTATGGTGCCTAATCCTTAATAGA
450 GTTTATGGTGCCTAATCCTGAAAAGA
* * * * * *
143938 ATAGGGATTAGTATGACTACTAATGTTTGTCTTATTTAAGGGACAAACTTTAATTTTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * ** *
144003 TGGTGGACAGAAAAGCATTTCTACTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAA-GGAA
66 CGATGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAA
* * *
144067 TGTG---TTGGTTCCCAATCTTGAAAAGAATAGG-GACTGTTATGAGAATCCATGGTTGTCATAT
130 TGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGTCATAT
* *
144128 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGTAAAAGAAAAT
194 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * *
144193 CATCAATATCATTTATCCTAATGTA-GAGAATGTGTTTATAGTGCGTAATCATAAAAAGAAT-AT
259 CATCAATATCATTTATCCTAATG-AGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-
* * * * *
144256 AGATCATTACTGGAATCTATGTCTGTCTCATTTTAGGCATGAACTTAGACTTTACAAAAATTGGT
322 AGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGT
* * ** **
144321 GGGAAGAATGACTTTCTTGCGAAACCAAAGCATCAATATTGTGTATGGTTATGAGAAGACTATGT
387 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
*
144386 GTATGGTGCC-AATCCTGAAAAGA
452 TTATGGTGCCTAATCCTGAAAAGA
* * * *
144409 ATGGTGATTAGCATGACTATTCATGTTTGTCTTATTTGAGAGACAAACCTTGATTCTATCAAAAA
1 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * *
144474 CGGTGGGAAGGAAAGCTTTTCTTGTGGCACCAAAGCATCAATGTCATTTATCCTAATA-AAGGGA
66 CGAT-GGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGA
* *
144538 ATGTGTTCTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCATAT
129 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA-
* * * *
144603 TTTTAGGGATGAATTTTGATTTTAAGGAAATTAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAA
193 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
144668 TCATCAATATCATTTATC
258 TCATCAATATCATTTATC
144686 TTGACAAGGA
Statistics
Matches: 5690, Mismatches: 1031, Indels: 347
0.81 0.15 0.05
Matches are distributed among these distances:
454 1 0.00
455 217 0.04
456 8 0.00
457 1 0.00
460 1 0.00
461 5 0.00
462 131 0.02
463 11 0.00
465 2 0.00
466 11 0.00
467 99 0.02
468 96 0.02
469 103 0.02
470 196 0.03
471 312 0.05
472 423 0.07
473 475 0.08
474 727 0.13
475 969 0.17
476 1790 0.31
477 110 0.02
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
CGATGGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAAT
GTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTT
AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
TCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
CATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
GGTGCCTAATCCTGAAAAGA
Found at i:145821 original size:475 final size:475
Alignment explanation
Indices: 144703--146586 Score: 2156
Period size: 475 Copynumber: 4.0 Consensus size: 475
144693 GGAGAATGTT
* * * *
144703 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGGAAGCCTTTCTTGTGAAAA-CAAAGCGTCAA
1 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTG-CAAAACCAAAGCATCAA
* * * * * * * * ** * * *
144767 TATTGTGTATCTTTATGAGAAGACTATGTTTACGATGCTTAATCTTGAGTATAATAGAATTACTA
65 TATCGTGCATC-TTATGCGAAGACTATGATTATGATGCCTAATCCTAAAAAGAATAGGATTAGTA
* * * * *
144832 TGATTATTCATGTTTGTCTCATTTAGGAGACAAAATTTGATTTTATCAAAAACGGTGGAAGGAAA
129 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * *
144897 AGCTT-TTTTTGTGACACCAAAGCATCAATGTCTTATATCCTAAAGTAGAGAATGTGTTCTTGGT
194 AGCTTATTCTTGTGACACCAAAGCATCAATGTCTTATATCCTAAAGAAGGGAATGTGTTCTTGGT
* * * * *
144961 TCCTAATCTTGAAAAGAATGGAGACTATTATGAGAA-TCGATGCTTATCCTATTTAAGAGATGAA
259 TCCCAATCTTGAAAAGAATAGAGACTATTACGAGAACT-GATGCTTGTCATATTTAAGAGATGAA
* * * *
145025 TTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCACACTAAAAG-AAATCATTAGTATCA
323 TTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATAC-AAAAGAAAATCATCAATATCA
* * * *
145089 TTTATCCTAACT-AGGAGAATTTGTTTATAGTGCTTAATCACAAAATGAATGAAGATCATCACTA
387 TTTATCCTAA-TGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* *
145153 GAATCCATGTTTATCTCATTTGAGG
451 GAATCCATGTTTGTCTCATTTCAGG
* * *
145178 CATGAACTTAGACTTTGCAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAA
1 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAA-CCTTTCTTGCAAAACCAAAGCATCAA
* * * * * * * *
145242 TATCGAGTATACTTATGGGAAGATTATGACTATGGTGCCTAA-CACTGAAAAGAATGGAGATTAG
65 TATCGTGCAT-CTTATGCGAAGACTATGATTATGATGCCTAATC-CTAAAAAGAATAG-GATTAG
*
145306 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGA
127 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * * * * * *
145371 AAAGCTTATT-TTGTTACACCACAGCATCAATTTCGTT-TATGCTAATGGAGGGAATGTGTTTTT
192 AAAGCTTATTCTTGTGACACCAAAGCATCAATGTC-TTATATCCTAAAGAAGGGAATGTGTTCTT
* * * * *
145434 GGTTCCCAATCTTGAAAGGAATAGAGGCTATAACGAGAATCTG-TGCTTGTCTTATTTAAGGGAT
256 GGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAA-CTGATGCTTGTCATATTTAAGAGAT
* * * * * * * *
145498 GAACTTTT-ATATTAAGGAAAATAGGGTAAAGAAAATATTTCCATGCAAAAGAAAACCATCTATG
320 GAA-TTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATA
145562 TCATTTATCCTAATGAGGAAAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTAC
384 TCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
145626 TAAAATCTATGTTTGTCTCATTTTAGG
449 TAGAATCCATGTTTGTCTCATTTCAGG
** ** * * *
145653 TGCGAACTTAGAGATTACAAAATTTAGTGAGAAGAAAACCTTTCTTGCAAAACCAAAG-AGTCAA
1 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAAACCAAAGCA-TCAA
* *
145717 TATCGTGCATCTTTATGCGAAGACTATG-TTAATTATGCCAAATCCTAAAAAGAATAGCGATTAG
65 TATCGTGCATC-TTATGCGAAGACTATGATT-ATGATGCCTAATCCTAAAAAGAATAG-GATTAG
* * * * * **
145781 TATGACTATGCATGTTTGTCTAATTTGATAGACAAACTTTGATTCTATCAAAAATGGTGG-ACTA
127 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * *
145845 AAATGCTT-TTCTTGTGACCCCAAAGCATCACTGTCTTGTATCCTAAAGAAGGGAATGTGTTCTT
192 AAA-GCTTATTCTTGTGACACCAAAGCATCAATGTCTTATATCCTAAAGAAGGGAATGTGTTCTT
* * * * * *
145909 AGTTCCCAATCTTGAAAAGAATAGAAACTGTTACGAGAACCGATGCTTCTCATATTTAAGGGATG
256 GGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAACTGATGCTTGTCATATTTAAGAGATG
* *
145974 AATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCTTACAAGAGAAAATCATCAATATC
321 AATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATC
*
146039 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
386 ATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
146104 GAATCCA--TTTGTAC-CATTTCAGG
451 GAATCCATGTTTGT-CTCATTTCAGG
* * * *
146127 CACGAACTTAGACTTTAAAAAAATTTGTGGGAAGAAAACCTTTCTTGCGAAACCAAAGTATCAAT
1 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAAACCAAAGCATCAAT
* * * *
146192 GTCGTGCATC-----C-----CTATGATTATGGTGCCCAATCCTAAAAAGAATGGGGATTAGTAT
66 ATCGTGCATCTTATGCGAAGACTATGATTATGATGCCTAATCCTAAAAAGAAT-AGGATTAGTAT
* * * * * * * *
146247 GACTATTAATTTTTGTCTTATGTAAGAGACAAGCTTTAATTCCATCAAAAATGGTGGAAGAAAAA
130 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAA
* * * *
146312 GC-TATTCTTATGACACCAAAGCAT-AATGTCTTGTGTCATAAAGAAGGGAATGTGTTCTTGGTT
195 GCTTATTCTTGTGACACCAAAGCATCAATGTCTTATATCCTAAAGAAGGGAATGTGTTCTTGGTT
* * * * *
146375 CCCAATCTTGAAAAGAATATATACTGTTATGAGAAATGATGCTTGTCATATTTAAGAGATGAATT
260 CCCAATCTTGAAAAGAATAGAGACTATTACGAGAACTGATGCTTGTCATATTTAAGAGATGAATT
* * * * *
146440 TTGATTTCAAGGAAAATAAGGCAAAGAAATGAATTCCATGCAAAAGAAAATCATGAATATCATTT
325 TTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTT
** *
146505 ATTTTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAAT
390 ATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
146570 CCATGTTTGTCTCATTT
455 CCATGTTTGTCTCATTT
146587 GAGACACAAA
Statistics
Matches: 1201, Mismatches: 176, Indels: 75
0.83 0.12 0.05
Matches are distributed among these distances:
462 216 0.18
463 103 0.09
464 18 0.01
468 1 0.00
474 100 0.08
475 475 0.40
476 278 0.23
477 9 0.01
478 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAAACCAAAGCATCAAT
ATCGTGCATCTTATGCGAAGACTATGATTATGATGCCTAATCCTAAAAAGAATAGGATTAGTATG
ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
CTTATTCTTGTGACACCAAAGCATCAATGTCTTATATCCTAAAGAAGGGAATGTGTTCTTGGTTC
CCAATCTTGAAAAGAATAGAGACTATTACGAGAACTGATGCTTGTCATATTTAAGAGATGAATTT
TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
CATGTTTGTCTCATTTCAGG
Found at i:147683 original size:475 final size:476
Alignment explanation
Indices: 146789--147691 Score: 1215
Period size: 475 Copynumber: 1.9 Consensus size: 476
146779 CTTGTATGCT
* * * *
146789 AATCGATGCTTGTCTATTTAGGGGATGAATTTTGATTTTAAGGAAAATAAGGCGAAGAAAAGATT
1 AATCGATGCTTGTCTATTTAAGGGATGAATTTTAATTTCAAGGAAAATAAGGCAAAGAAAAGATT
*** * *
146854 TTTGTGCAAAAAAAAATCATCAGCATCATTTATCCTAACGAGGAGAATGTATTCAGGGTGCCTAA
66 TCCATGCAAAAAAAAATCATCAACATCATTTATCCTAACGAGGAGAATGTATTCAGAGTGCCTAA
* *
146919 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTATAC
131 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
146984 TTCACAAGAATTAGTGAGAAGAAAGCCTTCCGTGGGAAAACAAAGCATCAATATCGTGTATCTTA
196 TTCACAAAAATTAGTGAGAAGAAAGACTTCCGTGCGAAAACAAAGCATCAATATCGGGTATCTTA
* * * * * * **
147049 ATGAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTCTTTTTG
261 ATGAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAAAATAGGGATCAGCATGACTATTCATG
**
147114 TTTATCTTATTTAAGGGACAAACTTTGATTCTATCAAAAATGGTGGACAGAAAAGCTTTTCTTGT
326 TTTATCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGACAGAAAAGCTTTTCTTGT
147179 GACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGATTGTGTTCTTGGTTCCCAATCTTGAA
391 GACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGATTGTGTTCTTGGTTCCCAATCTTGAA
147244 AAGAGTAAATACCGTTATGAG
456 AAGAGTAAATACCGTTATGAG
* * *
147265 AATCGATGCTTGTCATCTTTAAGGGATGAATTTTAATTTCAAGGAAAATAGGGCAAAGAATAGAT
1 AATCGATGCTTGTC-TATTTAAGGGATGAATTTTAATTTCAAGGAAAATAAGGCAAAGAAAAGAT
* * * * *
147330 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATAGTGCCTA
65 TTCCATGCAAAAAAAAATCATCAACATCATTTATCCTAACGAGGAGAATGTATTCAGAGTGCCTA
* * * * * *
147394 ATCACAAAATGAAT-ATAGATCATTATTGGAATGCATGTTTGTCTCATTTTAGGTACGAACTTAG
130 ATCACAAAATGAATGA-AGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
*** * * * * * ** *
147458 ACTTTGTAAAAATTGGTGGGAAGAAAGACTTTCTTGCGAAACCAAAGTGTCAATATTGGGTATGC
194 ACTTCACAAAAATTAGTGAGAAGAAAGACTTCCGTGCGAAAACAAAGCATCAATATCGGGTAT-C
*
147523 TT-ATG-AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAAAATAGTGATCAGCATGACTATTC
258 TTAATGAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAAAATAGGGATCAGCATGACTATTC
* * *
147586 ATGTTTGTTTTATTTGAAAAG-CAAACTTTGATTCTATCAAAAATGGTGGACAGAAAAGGTTTTC
323 ATGTTTATCTTATTT-AAAAGACAAACTTTGATTCTATCAAAAATGGTGGACAGAAAAGCTTTTC
* *
147650 TTGTGACACCAAATCATCAATGTCATT-TATCCTAATGAAGGG
387 TTGTGACACCAAAGCATCAATGTC-TTGTATCCTAAAGAAGGG
147692 TTCTTCGTAC
Statistics
Matches: 366, Mismatches: 56, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
475 142 0.39
476 132 0.36
477 92 0.25
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (476 bp):
AATCGATGCTTGTCTATTTAAGGGATGAATTTTAATTTCAAGGAAAATAAGGCAAAGAAAAGATT
TCCATGCAAAAAAAAATCATCAACATCATTTATCCTAACGAGGAGAATGTATTCAGAGTGCCTAA
TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
TTCACAAAAATTAGTGAGAAGAAAGACTTCCGTGCGAAAACAAAGCATCAATATCGGGTATCTTA
ATGAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAAAATAGGGATCAGCATGACTATTCATG
TTTATCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGACAGAAAAGCTTTTCTTGT
GACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGATTGTGTTCTTGGTTCCCAATCTTGAA
AAGAGTAAATACCGTTATGAG
Found at i:149098 original size:71 final size:71
Alignment explanation
Indices: 149014--149154 Score: 212
Period size: 71 Copynumber: 2.0 Consensus size: 71
149004 GATTAGCATG
* *** *
149014 ACTATTCATGTTTGTCTTATTTGAA-AGGCAAACTTTGATTCTATCAAAAATGGTGGACAGAAAA
1 ACTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAA
149078 GCTTTTA
65 GCTTTTA
*
149085 ACTATTCATGTTTGTCTTCTTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAG
1 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAG
149150 CTTTT
66 CTTTT
149155 TTTGCGACAC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 2 0.03
71 61 0.97
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36
Consensus pattern (71 bp):
ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAG
CTTTTA
Found at i:150831 original size:476 final size:476
Alignment explanation
Indices: 149528--152761 Score: 3889
Period size: 476 Copynumber: 6.8 Consensus size: 476
149518 TATTCATGGA
* * * * * * * *
149528 AAGACTATGGTTAAGGTGCCTAATCTTGAATAGAATGGGGATTGGGATAACTATTCATGTTTTTC
1 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * **
149593 TTATTTAAG-GGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTTTTGCAACAC
66 TTATTTAAGAGG-CAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACAC
* * * * *
149657 CAAAGCATCGATTTCATGTATCATAAAGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAA
130 CAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA
* * * * * * *
149722 TGGAGATTGTAACGAAAATTGATGCTTGTCATATTTAAGGGATAAATTTTGATTTTAAGGAAAAT
195 TGGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * * * * *
149787 AGGGCAAATAAAAGATTTCCATACAAAAGAAAATCATTAGTGTCATTTATCCTAATAAGGAGAAT
260 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
149852 GTGTTTATAGTGCCTAATCACAAAATGAATGACGACCAATACTAGAATCCATGTTTGCCTCATTT
325 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * * * *
149917 GAGGCATGAACTTAGAATTTAAAAAAATTGGTGGGAAAAAAGACTTTCTTGCGAAAGCAAAGCGT
390 CAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* *
149982 GAATATTGTGTATCCTTATGAG
455 CAATATCGTGTATCCTTATGAG
* * * *
150004 AAGACTATGTTTATGGTGCTTAATCCTGAATAGAATGGGGATTAGTATGACTATTCATGTTTATC
1 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* *
150069 TTATTTAA-AGGACAAACTTTGATTCTATCAAAAAC-AAGGACA-GAAAAGCTTTTCTTGTGATA
66 TTATTTAAGAGG-CAAACTTTGATTCTATCAAAAACGATGGA-AGGAAAAGCTTTTCTTGTGACA
* *
150131 CCAAAGCATCAATGTCTTGTATCCTACAGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
129 CCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
* * * * *
150196 ATAGAGACTGTTATGAGAATTGATGCTTATCATCTTTAAGGGATGAATTTTGATTTTAAGGAAAA
194 ATGGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * *
150261 TATGGCAAAGAATAGGTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
259 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
150326 TGTGTTTATAGTGCCTAATCACAAAATGAAT-ATAGATGATTATTGGAATGCATGTTTGTCTTAT
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGTCTCAT
* * * **
150390 TTCAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAATAAATACTTTCTTGCGAAACCAAAGC
388 TTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
150455 GTTAATATTG-GATATGCTTATGAGG
453 ATCAATATCGTG-TATCCTTATGA-G
* * * * *
150480 AA-ACTATGTTTATGGTGCCTAATCCTAAAAAGAGTGGTGATTAGCT-TGAATATTCATGTTTGT
1 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGT
* * *
150543 CTTATTTGAGAGGCAAACTTTGATTCTATCAAAAACGATGGACA-AAAAAGCATTTCTTGTGACA
65 CTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATGGA-AGGAAAAGCTTTTCTTGTGACA
* * * * * *
150607 CCAATGCATCAATGTCATT-TATCCTAATGAAGGGAACGTGTTCTTGGTACCAAATCTTGAAAAA
129 CCAAAGCATCAATGTC-TTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
* *
150671 AAGGGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGCGATGAATTTTGATTTTAAGGAAA
193 AATGGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAA
** * *
150736 ATAAGGCATGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGAAGA
258 ATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
150801 ATGTGTTTATATTGCCTAATCACGAAATGAATGAAGATCATTACTAGAATCCATGTTTGTATCAT
323 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * ** *
150866 TTCAAGCATGAACTTAGACTTTTCAAAAATTGGCCGGAA-AAAGGCCTTTCTTGCAAAACCAAAG
388 TTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTGCGAAACCAAAG
* *
150930 TATCAATGTCGTGTATCCTTATGAG
452 CATCAATATCGTGTATCCTTATGAG
* * * *
150955 AAGACGATGATTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTATGACTATTCATCTTTGT-
1 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * ***
151019 TATATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAGGAAAAGCTTTTCTTACAACAC
66 T-TATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACAC
* * **
151084 CAAAGCATCAATGTCTTGGATCTTAAAGAAGTAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA
130 CAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA
* * * *
151149 TGGACACTATTATGTGAATCGATGCTTCTCATATTTAAGGGTTGAATTTTGATTTTAAGGAAAAT
195 TGGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * ** * * * * ** *
151214 GAGGTAATGAAAAGATTTCCACACAAACGAAAATCATCAAAATCTTTTATTCTAATGACAAGAAA
260 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * *
151279 GTGTTTATAATGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTT
325 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
151344 CAAGG-ATGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGTCTTTCTTGCAAAACCAAAGCA
390 C-AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* * * * *
151408 TAAATGTTGAGCATCCTTATGAG
454 TCAATATCGTGTATCCTTATGAG
* * * * *
151431 AAAACTATGACTATGGTGCCTAA-CAC--AAAAAAATAGGGATTAGTATGACTATTCATGTTTAT
1 AAGACTATGATTATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* ** *
151493 CTTATTTTAGAGATAAACTTTGATTCCATCAAAAAC-AGTGGAAGGAAAAGCTTTT-TCTGTGAC
65 CTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGA-TGGAAGGAAAAGCTTTTCT-TGTGAC
* * * * * *
151556 ACCAAA-CATCAATGTCATGTGTGCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
128 ACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
* * *
151620 AATGGAG-GT-TGTAGTGAGAATCGTTGCTTGTCTTATTTCAA-GGATGAATTTTGATTTTAAGG
193 AATGGAGACTAT-TA-TGAGAATCGATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGG
* * * * * ** *
151682 AAAATAGGGCGAAGAAAAGATTTTCATGCAAAAAAAAATAATCAGCATCATTTATCCTAACGAGG
255 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * *
151747 ATAATCTGTTCATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCT
320 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * *
151812 CATTTGAGGCACGAACTTAGACTTTACAAGAATTGGTGGGAAGAAAGCCTTTCTTGCTAAACCAA
385 CATTTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAA
* * * *
151877 AGCATCAATATCATTTATCTTTCTGAG
450 AGCATCAATATCGTGTATCCTTATGAG
* * * * * *
151904 AAGACTATGTTTTTGGTGCCAAATCATGAATAGAATGGGGATTAGTATGACTCTTCATGTTTGTC
1 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* *
151969 TTATTTAAG-GGACAAACTTTGATTCTGTCAAAAACGATGGAAAGAAAAGCTTTTCTTGTGACAC
66 TTATTTAAGAGG-CAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACAC
* * * *
152033 CAAAGCATTAATGTCTTGTATCCTAAAGAAGAGAATGTGTTCTTGGTTTCTAATCTTGAAAAGAA
130 CAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA
* * * *
152098 TAGG-GACTACTACGAGAATCGATGCTTGTCATATTTAACGAATGAATTTTGATTTTAAGGAAAA
195 T-GGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * *
152162 TAGGGCAAAGAATAGATTTCCATGCACAAGAAAGTCATCAATATCATTTATCCTAATGAGGAGAA
259 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
** *
152227 TGTGTTTATAGCACCTAATCACAAAATGAAT-ATAGATCATTA-TCGGAATCCATGTTTGTCTCA
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACT-AGAATCCATGTTTGTCTCA
* * * * * * *
152290 CTTCAAGTAAGAACATAGACTTTAAAAAAAATT-GTAGGAAGAAAGCCTTTCTTGCGAAACCAAA
387 TTTCAGGCATGAACTTAGACTTT-ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAA
* * * *
152354 GTATCAATGTCGTGTATCCTTTTAAG
451 GCATCAATATCGTGTATCCTTATGAG
152380 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
1 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * * * *
152445 ATATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTAGAAGGAAAAGCTTTTATTGTGACACC
66 TTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACACC
* * * ** * *
152510 AAAGCATCAATGCCTTGTGTCCTAAAAAACCGAATGTGTTCTTCGTTCTCAATCTTGAAAAGAAT
131 AAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* * *
152575 GG-GCAATGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
196 GGAG-ACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * *
152639 AA-GCTAAAGAAAAGATCTCCATGCAAAAGAAAATCATCAATATCATTTATTCTAATGAAGAGAA
260 AAGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
152703 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATTTTTGT
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
152762 TTCTTTTGAG
Statistics
Matches: 2356, Mismatches: 356, Indels: 92
0.84 0.13 0.03
Matches are distributed among these distances:
471 1 0.00
472 6 0.00
473 291 0.12
474 93 0.04
475 512 0.22
476 1429 0.61
477 24 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
TTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACACC
AAAGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
GGAGACTATTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTC
AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
AATATCGTGTATCCTTATGAG
Found at i:154294 original size:474 final size:472
Alignment explanation
Indices: 152779--154383 Score: 1840
Period size: 474 Copynumber: 3.4 Consensus size: 472
152769 GAGGCACCAA
* * * * * * *
152779 CTTGCGAAACCAAAGCATTAATATCGA-GTATTCTCATCAAAAGACTATGACTGTGGTGCCTAA-
1 CTTGCAAAACCAAAGCATCAATATC-ATGTA-TCTTATGAGAAGACTATGATTATGGTGCCTAAT
* * * * *
152842 CACTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAATTAAGAGATAAACTTTGTT
64 C-CTGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAA-AGACAAACTTTGAT
* * * *
152907 TCTATCAAAAACAGTGGAGGAAAAGCTTTTTTTGCGACACCAAAGCATCAAA-GTCTTGTATGCT
127 TCTATCAAAAACGGTGGAAGAAAAGCTTTTTTTGTGACACCAAAGCAT-AAATGTCTTGTATCCT
* * * * *
152971 AGTTAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGA-AGCTGTAACGAGAATCGAT
191 AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA-CTGTTACGAGAATCGAT
* * * * * *
153035 ACTTGTCTTATTTAGGGGATGAATTTTGATTTTCATGAAAA-AAGGGCGAAGAAAAGATTTTC-T
255 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAA-GGC-AAGAAAAGATTTCCAT
* * * **
153098 -TATAAA-AAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTCA-AAGTGCAGAATCA
318 GCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAA-TGCCTAATCA
* * * * * **
153160 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTATTTCATTTGAGGCATGAACTTATACCAT
381 CAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTATCATTTCAGGCATGAACTTAGACTTT
* * * *
153225 ATAAGAATTGGTGGGAAGAAAGCCTTC
446 ACAAAAATTGGTGGGAAGAAAGACTTT
* * * *
153252 CTTGCAAAAACAAAGCGTCAATATCATGTATCTTAATGAGAATACTATGTTTATGGTGCCTAATC
1 CTTGCAAAACCAAAGCATCAATATCATGTATCTT-ATGAGAAGACTATGATTATGGTGCCTAATC
* * *
153317 CTGAATAGAATGGGGATTAGTATGACTATT-ATTGTTTATCTTATTTAAAGGACAAACTTTGATT
65 CTGAAAAGAATGGAGATTAGTATGACTATTCA-TGTTTGTCTTATTTAAA-GACAAACTTTGATT
* * *
153381 TTATCAAAAACGGTGGACAGAAAAG-TTTTTCTTGTGACAACAAAGCATCAATGTCTTGTATCCT
128 CTATCAAAAACGGTGGA-AGAAAAGCTTTTT-TTGTGACACCAAAGCATAAATGTCTTGTATCCT
* * *
153445 AAAGAAGGGAATGTGTTCTTGGTTCGCC-ATCTTGAAAAGAATAGAGACTGTTATGAGAATCGAT
191 AATGAAGGGAATGTGTTCTTGGTTC-CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* * *
153509 GCTTGTCATCTTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATG
255 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGC-AAGAAAAGATTTCCATG
*
153574 CAAAAGAAAATCATCAATATCATTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
319 CAAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACA
* * * * * *
153639 AAATGAAT-AGAGATCATTATTCGAA-CTCATGTTTGTCGT-GTTTCGGGCACGAACTTAGACTT
383 AAATGAATGAG-GATCATTACTAGAATC-CATGTTTGT-ATCATTTCAGGCATGAACTTAGACTT
* *
153701 TGCAAAAATT-ATGGGAAGAAAGACTTT
445 TACAAAAATTGGTGGGAAGAAAGACTTT
*
153728 CTTGCAAAACCAAAGCATCAATAT--TGGATATGCTTATGAGAAGACTATGTTTATGGCATG--T
1 CTTGCAAAACCAAAGCATCAATATCAT-G-TAT-CTTATGAGAAGACTATGATTATGG--TGCCT
* * * **
153789 AATCCTAAAAATAATGGTA-ATTAGCATGACTATTCATGTTTGTCTTATTTGAAAGGTAAACTTT
61 AATCCTGAAAAGAATGG-AGATTAGTATGACTATTCATGTTTGTCTTATTT-AAAGACAAACTTT
*
153853 GATTCTATCAAAAACGGTGGACAGAAAAGCTTTTATTGTGACACCAAAGCATAAATGTCATT-TA
124 GATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTTTTGTGACACCAAAGCATAAATGTC-TTGTA
*** * * *
153917 TCCTAATGAACAAAATGTGTTCTTGGTACCCAATCTTGAAAATAATGGAGATTGTTACGAGAATC
187 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
* * *
153982 AATGCTTGTCATATTTAAGGGATGAA-ATTGATTTTAAGGAAAATAAGGCATCGAAAAGATTTCC
252 GATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCA-AGAAAAGATTTCC
*
154046 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAATGCCTAATCA
316 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCA
* *
154111 CGAAATGAATGAGGACCATTACTAGAATCCATGTTTGTATCATTTCAGGCATGAACTTAGACTTT
381 CAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTATCATTTCAGGCATGAACTTAGACTTT
**
154176 ACAAAAATTGGTGGGAA-AAAGTTTTT
446 ACAAAAATTGGTGGGAAGAAAGACTTT
*
154202 CTTGCAAAACCAAAGCATCAATGTCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC
1 CTTGCAAAACCAAAGCATCAATATCATGTAT-CTTATGAGAAGACTATGATTATGGTGCCTAATC
* * * * *
154267 CTGAAAAGAATAGAGATTAGTATGACTATTCTTATTTGTTTTATTTAGAGACAAACTTTGATTC-
65 CTGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAAGACAAACTTTGATTCT
* * *
154331 ATTCAAAAACTGTGGAAGGAAAAGCTTTTTTTGTGGCA-CAAAGCATCAATGTC
130 A-TCAAAAACGGTGGAA-GAAAAGCTTTTTTTGTGACACCAAAGCATAAATGTC
154384 ATGTGCTATA
Statistics
Matches: 963, Mismatches: 127, Indels: 85
0.82 0.11 0.07
Matches are distributed among these distances:
472 24 0.02
473 170 0.18
474 331 0.34
475 77 0.08
476 258 0.27
477 99 0.10
478 4 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (472 bp):
CTTGCAAAACCAAAGCATCAATATCATGTATCTTATGAGAAGACTATGATTATGGTGCCTAATCC
TGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAAGACAAACTTTGATTCTA
TCAAAAACGGTGGAAGAAAAGCTTTTTTTGTGACACCAAAGCATAAATGTCTTGTATCCTAATGA
AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAGAAAAGATTTCCATGCAAAAGA
AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAAT
GAGGATCATTACTAGAATCCATGTTTGTATCATTTCAGGCATGAACTTAGACTTTACAAAAATTG
GTGGGAAGAAAGACTTT
Found at i:156374 original size:475 final size:472
Alignment explanation
Indices: 155476--163803 Score: 8213
Period size: 475 Copynumber: 17.5 Consensus size: 472
155466 TCACAAAAAG
* * *
155476 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATGCTTATAAGAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * *
155541 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGTGATTAGCAAGACTATTCATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTA
* * * * * *
155606 CTTAAGAGAGAAACTTTGATTTTATCAAAAATAGTAGAAGGAAAAGCTTTTCTTGTGAGACCAAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAAA
* **
155671 GCATCAATGTCTTGTGTCCTAAAAAAGCAAATGTG-TCTTGGTTCCCAATCTTGAAAAGAATGGG
195 GCATCAATGTCTTGTATCCT-AAAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGG
* * * *
155735 CACTATTACGAGAATCGATCCTTGACATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGA
259 -ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* * * *
155800 CAAAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGAGT
323 CAAA-AAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
*
155865 TTATAGCGCCTAATCACAAAATGAAT-ATAGATCATTACT-GAAATCCATGTTTGTCTCATTTCA
387 TTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATTTCA
* * *
155928 GGCATGAACGTAAACTTTACAAA
450 GGCACGAACTTAGACTTTACAAA
* *
155951 AATTTATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATGCTTATGAGAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * *
156016 ACTATGTTTATGGTGCCTAATCCTAAAAAAAATGGTGATTAGCATGACTATTCGTGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTA
* *
156081 TTTAAGAGACAAACTTTGATTTTATCAAAAATAGTGGAAGGGAAAGCTTTTCTTCTGACACCAAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAAA
* * * ***
156146 GCTTCAATGTTTTGTGTCCTAAAAAAAAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGGC
195 GCATCAATGTCTTGTATCCTAAAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGG-
* * *
156211 ACTGTTACAAGAATCGATGCTTATCATATTTAAGGGATCAATTTTGATTTTAAGGAAAATAGGGC
259 ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
156276 AAAAAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
324 AAAAAA-AGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
156341 TATAGTGTCTACTCACAAAATGAATGAAGATCATTACTAGAATTCTTGTTTATCTCATTTCAAGG
388 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTC-AGG
* *
156406 -ATGAACTTAGACTGTAC-AA
452 CACGAACTTAGACTTTACAAA
* * * *
156425 AATTTGGTGGGATGAAAGCCTTTCTTGCAAAACCAAAGCATCAATGTCGAGTATCCTTATGAGAA
1 AATTT-GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
* ** * * * *
156490 AACTATGACTATGGTGCCTAA-CACTAAAAAGAAAGGGGATTCGTATGGCTATTCATGTTTGTCT
65 GACTATGTTTATGGTGCCTAATC-CTGAAAAG-AATGGGATTAGTATGACTATTCATGTTTGTCT
* * * * *
156554 TATTGAAGAGACAAACTTAGATTCTATCAAAGATAGTGGATGGAAAAGCTTTTTTTGC-GACACC
128 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTT-CTGACACC
* *** * * * * * * *
156618 AAAGCATCAGTGTGAGGCATGCTAAAGGAGGAAATGTGTTTTTGGTTCCTAAACTTGAAAAGAAT
192 AAAGCATCAATGTCTTGTATCCTAAA-AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
** * * *
156683 GGAGGTTG-TAGTGAGAATC-ATTGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAGGGAAAA
256 GG-GACTGTTA-CGAGAATCGA-TGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * *
156746 TAGGGCGAAGAAAAGATTGTC-GTGCAAAA-AGAATCATCAGTATCATTTATCCTAATGAGGAGA
318 TAGGGC-AAAAAAAGATT-TCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
156809 ATGTGTTTATAGTGCCTAATCATAAAATAAATAAAGATCATTACTAAAATCCATGTTTGTCTCAT
381 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
156874 TTGAGGCACAAACTTGGACTTTAAAAA
446 TTCAGGCACGAACTTAGACTTTACAAA
* * *** * *
156901 AATTGGTGGGAAGAAAGCCTTTCTTGCGGAACCAAAATGTCAATATCGTGTATCTTTATGAGAAA
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
** ** * * *
156966 ACTATGTTTATGGTGCCTAATTATGAATTGAATAGGGATTAGTATGAGTATTCTTGTTTTTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA
* * * ** *
157031 TCTAATG-GATAAACTTTGATTTTATCAAAAACGGTGGACA-GAAAAGCTTTTCTTGTGACACCA
130 TTTAA-GAGACAAACTTTGATTCTATCAAAAATAGTGGA-AGGAAAAGCTTTTCTTCTGACACCA
* * * *
157094 AAGTATCAATGTCATT-CATTCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
193 AAGCATCAATGTC-TTGTATCCTAA-AAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* * * * * * *
157158 GGAGACTATTATGAGAATCGATACTTATCATATTTAAGGGATGAACTTTAATTTTAAAGAAAATA
256 GG-GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * * * * * * *
157223 GGGCAAAGAAAACATTT-TCATGCAAAAGAAAACCTTCAGTGTCATTTATCCTTATGAGGAAAAC
320 GGGCAAA-AAAAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * *
157287 ATGTTTATAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTT
383 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
*
157352 GAGGCACGAACTTAGACTTTACAAA
448 CAGGCACGAACTTAGACTTTACAAA
* * * * * * * *
157377 AATTGGTGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCGTCAATGTTGTGTATCCTTATAAGAA-
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * ** * * *
157441 ACTATGATTATGGTGCCTAATCCTGAAAAGAATAGGATTAGTACAACTACTCATATTTGTTTTAT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * *
157506 TTAAGAGACAAACTTTGATTCTATGAAAAA-CGATGGAAGGAAAAGCTTTTTTTGC-GACACCAA
131 TTAAGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAGGAAAAGCTTTTCTT-CTGACACCAA
* * * * * *
157569 AACATTAATGTCATGTATGCTAACAGAGGGAATGTGTT-TGTGGTTCCCAATCTTGGAAAGAATG
194 AGCATCAATGTCTTGTATCCTAA-AAAGGGAATGTGTTCT-TGGTTCCCAATCTTGAAAAGAATG
* * * * * *
157633 GAGGCTGTAACGAGAATCGATGCTTCTCTTATTTAAAGGATGAATTTTGGTTTTAAGGAAAATGA
257 G-GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-A
** * * * * * *
157698 GGTG-ATGAAAAGATGTTC-GTGCAAAAAAAAATCATTAGTATCATTTATCCTAACGAGGAAAAT
320 GG-GCAAAAAAAGAT-TTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * * *
157761 GTGTTTATGGTGCCTAATCGCAAAATGAATCAAGCTCATTACAAGAA-CCTATGTTTATCTCCTT
383 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATT
* * *
157825 TGAGGCACAAACTTAGCCTTTACAAA
447 TCAGGCACGAACTTAGACTTTACAAA
* ** * * * * *
157851 AATTAGTTAGAAGAAAGCCTTTCCTACGAAACCAAAGCGTCAATATCATGTATCCTTATGAAAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * * * *
157916 ACTGTGTTTACGGTGCCTAATCCTGTATAGAATGGGGATTAGTATGACTATTCATGTTCGTTTTT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA
* * ** *
157981 TTTAAGGGACAAACTTTGATTCTATGAAAAGCAGTGGATA-GAAAAGCTTTTCTTGTGACACCAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGA-AGGAAAAGCTTTTCTTCTGACACCAA
* * * * *
158045 AGGATCAATGTCTTGTATTCTAAAAGGGGAATATGCTT-TTGGTTCCTAATCTTGAAAAGAAT--
194 AGCATCAATGTCTTGTATCCTAAAAAGGGAATGTG-TTCTTGGTTCCCAATCTTGAAAAGAATGG
* * * * *
158107 G---G--A-GA-AA-CAATGCTTGTCATATTTAAGGGATGAATTTTAATTCTAAGTAAAATACGG
258 GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* * * * *
158164 CAAAAAAAGATTT-TCATGTAAATGAAAATCATCAATATCATTTATTCTAACGAAGAGAATGTGT
323 CAAAAAAAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * * *
158228 TTACAGCGTCTAATCACAAAATGAATGAAGATAATTACTAGAATCCATG-TT-TCTCATTTCCGA
387 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGG
158291 CACGAACTTAGACTTTACAAA
452 CACGAACTTAGACTTTACAAA
* * *
158312 AATTGGTGGGAAGAAAG-CTTTCTTGTGAAACTAAAAG-ATCAATATCGTGTATCCTTATGAGAA
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAA
* * * * * * *
158375 GACTATGATTATGGTGCCTAGTCCTAAAAAGAATAGGGATTAGTACGACTATTCAAGTTTTTCAT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTT
* * * * * * * *
158440 ATTTAGGATATAAACTTTGATTCCATCAAAAACAGTGGAAGTGGAAGGTAAAGCTTTTTTTGTGG
129 ATTTAAGAGACAAACTTTGATTCTATC-AAAA-A-T---AGTGGAAGGAAAAGCTTTTCTTCTGA
* * * ** * * *
158505 CACCAAAGCATCAATGTCTGGAATGCTAATGGAGGGAATGTGTTTTTGGTTACCAACCTTGAAAA
188 CACCAAAGCATCAATGTCTTGTATCCTAA-AAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
* * * * * ** * * * **
158570 GAATAGAGG-TTATAACAATAATCGATGCTTGTTTTACTTAAGGGATAAACTTTGACATTAAGGA
252 GAAT-G-GGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * * ** * * *
158634 AAATAGGGCAAGGAAAATATTTCCATGCAAAAGAAAACCATCTGTGTCATTAATCCTAGTGAGGA
315 AAATAGGGCAA-AAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * * * * * * * *
158699 AAATGTGTTCA-AGTGCCTACTCGCGAAATGAATGAAGCTCATTACAATAATCTATGTCTATCTC
379 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* *** * * *
158763 ATTTCACGTGTGAACTTAAAGTTAAC-AA
444 ATTTCAGGCACGAACTTAGACTTTACAAA
* * ** * * * * *
158791 AATTTAGTGAGAGGAAAGCCTTTGATGTGAAACCAAAGCATTAATATCATCTATCCTAATGAGAA
1 AATTT-GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
* *
158856 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTTATGTTTGTCAT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTT
* * * * * * * *
158921 ATTTTAGAGAGAAACTTTGATTCCATAAAAAATGGTGGAAAGAAAACCTCTTCTTGCTG-CACCA
129 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTT-CTGACACCA
* * * * * * *
158985 AAACATCAATGTCATATATCCTAATGAAGAGACTATGTTCTTGGTTCCCAATCTTGAAAA-AGAT
193 AAGCATCAATGTCTTGTATCCTAA-AAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-AT
* * * * *** *
159049 GGGGTCTGTTTCGAGAATCGATGCTTGTCTTACTTATCTGATGAACTTTGATTTTAAGGAAAATT
256 -GGGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA-T
159114 A-GGCAAAGAAAAGATTT-TCATGCTAAAA-AAAATCATCAATATCATTTATCCTAACT-AGGAG
319 AGGGCAAA-AAAAGATTTCT-ATGC-AAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAG
* * * * *
159175 AATGTGCTTATAGTGCCTAATTACCAAATGAATGAAGATCATTACTAGATTCCTTGTTTGTCTCA
380 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
*
159240 TTTAAGGCACGAACTTAGACTTTACAAA
445 TTTCAGGCACGAACTTAGACTTTACAAA
* * *
159268 AATTAGTGGGAAGAAAGCCTTTCTTG-GAAAACCAAAGCGTCAAT-GCTGTGTATCCTTATGAGA
1 AATTTGTGGGAAGAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATC-GTGTATCCTTATGAGA
* * * * * *
159331 AAACTATGATTATGGCGCCTAATCCTGAAAAGAATTGGGATTAGTACGACTATTCATATTTGTTT
64 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGACTATTCATGTTTGTCT
* * *
159396 TATTTAAGAGACAAACTTTGATT-TGTTCAAAAACT-GTGGAAGGCAAAGCTTTTTTTGC-GACA
128 TATTTAAGAGACAAACTTTGATTCT-ATCAAAAA-TAGTGGAAGGAAAAGCTTTTCTT-CTGACA
* ** * * *
159458 CCAAAGCATCAATGTCATGT-TCTCTAACGGAGGGAATCTGTT-TTGGATCCCGATCTTGAAAAG
190 CCAAAGCATCAATGTCTTGTATC-CTAA-AAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
* * * ** * *
159521 AATAGAAGCTGTAACGAGAATCGATGCTTGTTTTATTTAAAGGATGAATTTTGATTATAAGGAAA
253 AATGGGA-CTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAA
* * ** * * *
159586 ATAAGGCAAAGAAAAGACTTTC-ATACAAAA-AAAATCATCGGTATCATTTATCATAACGAGGAT
317 ATAGGGCAAA-AAAAGA-TTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* ** * * * * *
159649 AATGCGTAAATAGTGCCTAATCACAAAATGAAAGAAGCTCATTACTAGAATCTATGTTTGTATCC
380 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * *
159714 TTTGAGGCATGAACTTAGAATTTACAAA
445 TTTCAGGCACGAACTTAGACTTTACAAA
* * * * * * * ** *
159742 AATTGGTGGGAAAAAAGACTTTCTTGCGAAATCAATGCGTTAATATTTTGTATCCTTACGAGAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* *
159807 ACTATGTTTATGGTGCCTAATCCTGAAAGGATTGGGAATTA-TATGACTATTCATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGACTATTCATGTTTGTCTTA
* * * * * *
159871 CTTAAGGGACAAACTTTGATTCTATGAAAAATAGTGGATAAG-AAAGCTTTTCTTGTGACATCAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGA-AGGAAAAGCTTTTCTTCTGACACCAA
* * * ** *
159935 AGCATCAATGTCATGTGTGCT-AATGGCGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
194 AGCATCAATGTCTTGTATCCTAAAAAG-GG-AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
* * * ** * *
159999 GAGGCTATAATAAGAATTGATGCTTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
257 G-GACTGTTACGAGAATCGATGC-TTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * ** * *
160064 GGGCGAAGAAACA-ATTTTTGGGCAAAA-AAAATCATCAGTATCATTTATCGTAATGAGGAGAAT
320 GGGC-AA-AAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
160127 GTGTTCATAGTGCCTAATCACAAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTT
383 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
160191 GAGGCACAAACTTAGACTTTACAAG
448 CAGGCACGAACTTAGACTTTACAAA
* * * *
160216 AATTGGTGGGAAGAAAGCCTTTTTTGCGAAACCAAAGCATCAATATCGT-TGATCTTTATTAGAA
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGT-ATCCTTATGAGAA
* * * * * * *
160280 GACTATGTTTATGGTGCCAAATCATGAATATAACGGGGATTAGTATGACTATTCATGTTTATTTT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGACTATTCATGTTTGTCTT
** * * * * * *
160345 ATTTGTGAGACAAAATTTGATTTTATCAAAAA-CGACGGATA-GAAAAGCTTTTCTTGTGACACT
129 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAG-TGGA-AGGAAAAGCTTTTCTTCTGACACC
* *
160408 AAAGCATCAATGTCTTGTATCCTAAAGAAGAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAAT
192 AAAGCATCAATGTCTTGTATCCTAAA-AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* * * * *
160473 AGAGACTGCTATGAGAATCTATGCTTGTCATATTT-AGGGCATGAACTTTGATTTTAAGGAAAAT
256 -GGGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGG-ATGAATTTTGATTTTAAGGAAAAT
**
160537 AGGGCAAAGAATGGATTT-TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
319 AGGGCAAA-AAAAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* ** * * *
160601 TGCGTTTATAGCACCTAATCACAAAAAGAAT-ATAGATCATTTCT-GAAATCTATGTTTGTCTCA
382 TGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAG-AATCCATGTTTGTCTCA
160664 TTTCAGGCACGAACTTAGACTTTACAAA
445 TTTCAGGCACGAACTTAGACTTTACAAA
* * ** * * * *
160692 AATTGGTGAGAAGAAAGTTTTTCTTGCGAAACCAAAGCATCAATTTTGTGTATGCATATGAGAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * *
160757 ACTATGTTTATTGTGCCTAATCCCGAAAAGAATGGTGATTAGCATGACTATTCATGTTGGTTTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTA
* * * *
160822 TTTAAGAGACAAA-TTTGATTTTAT-AAAAACAATGGAAGGAAAAGCTTTTCTTGTGACACCAAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAAA
* * * * *
160885 GCATCAATGTCTTGTGTGCTAAAAAAGTGAATGTGTTCTTGGTTCCTAATCTTGAACAGAATGAG
195 GCATCAATGTCTTGTATCCT-AAAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG-G
* * * *
160950 CACTATTACGAGAATCAATGCTTGTCATATTTAGGGGATGAATTTTGATTTTAAGGAAAATAGGG
258 GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* * *
161015 CAAAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGT
323 CAAA-AAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
** *
161080 TTATAGCACCT-ATCACAAAATGAAT-ATAGATCATTACT-GAAATCCATGTTTGTCTCATTTCC
387 TTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATTTCA
161142 GGCACGAACTTAGACTTTACAAA
450 GGCACGAACTTAGACTTTACAAA
* * * * * *
161165 AATTTATGAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCATGTATGCTTATGAGAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
*
161230 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGTGATTA-TCATGACTATTCGTGTTTGTCTT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGT-ATGACTATTCATGTTTGTCTT
*
161294 ATTTAAGAGACAAACTTTGATTTTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAA
129 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAA
* * ** *
161359 AGCATCAATGTTTTGTGTCCTAAAAAAAGAATGTGTTCTTGGTTGCCAATCTTGAAAAGAATGGG
194 AGCATCAATGTCTTGTATCCTAAAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGG
* * *
161424 CACTGTTACAAGAATCGATGCTTATCATATTTATGGGATGAATTTTGATTTTAAGGAAAATAGGG
259 -ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* * * ** *
161489 CAAAGAATAGATTTCTATGC-AAAGAAAAACATCAATATCTTTTATTATAACGAGGAGAATGTGT
323 CAAA-AAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
161553 TTATAGTGTCTACTCACAAAATGAATGAAGGTCATTACCAGAATCCATGTTTGCCTCATTTCAAG
387 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTC-AG
* * *
161618 G-ATGAACTTAAACTATAC-AA
451 GCACGAACTTAGACTTTACAAA
* * * * * * *
161638 AATTGGTGGGAAGAAAGCCTGTCTTGCGAAACCAAAGCGTCAATGTTGTGTATCCTTATAAGAAA
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * * *
161703 ACTATGATTATGGTGCCTATTCTTGAAAAGAATAGGATTAGTATGACTATTCATATTTGTTTTAT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
161768 TTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGAAGGAAAAGCTTTTCTTGC-GACACCAAA
131 TTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTT-CTGACACCAAA
* * * ** ** * *
161832 ACATTAATGTCATGTATGGTAACTGAGGGAATATGTTTTTGGTTCCCAATCTTGAAAAGAATGAA
195 GCATCAATGTCTTGTATCCTAA-AAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG--
* * *
161897 GG-CTATAACGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATGAG
257 GGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AG
* * * *
161961 GTG-AAGAAAAGATTT-TCGTGCAAAACAAAAATCATCAATATCATTTATCCT-ATCGAGGAAAA
321 G-GCAAAAAAAGATTTCT-ATGCAAAA-GAAAATCATCAATATCATTTATCCTAAT-GAGGAGAA
* * * * * *
162023 TGTGTTTATGGTGCCTAATCGA-AAAATGAATGAAGCTCATTAGTAGAGTCTATGTTTATCTCAT
382 TGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
162087 TTGAGGCACAAACTTAGCCTTTACAAA
446 TTCAGGCACGAACTTAGACTTTACAAA
* ** * * * * * * *
162114 AATTAGTTAGAAGAAAGCCTTTCCTACGAAACCAAAGCGTTAATTTCATGTATCCTTATGAAAAG
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * *
162179 ACTATGTTTACGATTCCTAATCCTGAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA
* * ** *
162244 TTTAAGGGACAAACTTTGATTCTATGAAAAGCAGTGGACA-GAAAAGCTTTTCTTGTGACACCAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGA-AGGAAAAGCTTTTCTTCTGACACCAA
* * * *
162308 AGGATCAATGTCTTGTAT-CTGAAAAGGGGAATGTGCTCTTGGTTCCTAATCTTGAAAAGAATGG
194 AGCATCAATGTCTTGTATCCT-AAAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
* * * * * * **
162372 AGACTGTTACAAGAAACAATGCTTGTCATATTTAAGGGATGAATTTTAATTCTAAGTAAAATAAC
258 -GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
* * *
162437 GCAAAGAAAAGATTTTCATAT--AAATG-AAATCATCAATAT-ATTTTATTCTAACGAGGAGAAT
322 GCAAA-AAAAGA-TTTC-TATGCAAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAGAAT
* * * * *
162498 GTGTTTATGGTGCTTAATCACAAAATGAATGAAGATAATTACTAGAATCCATGTTTCTTTCATTT
383 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TT
* *
162563 TC-GACATGAACTTAGACTTTACAAA
447 TCAGGCACGAACTTAGACTTTACAAA
*
162588 AATTTGTGGGAAGAAAACCTCTTCTTGCGACCTTATGCCTTTTTTGCGAAACTAAAGCATCAATA
1 AATTTGTGGGAAG-AAA-----------G-CCTT-T--C----TTGCGAAACCAAAGCATCAATA
* * ** * *
162653 TCGTGTATCCTTATCAGAAGACTATGATTATGGTGCCTAGCCCTAAAAAGAATAGGGATTAGTTT
46 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTAT
* * * *
162718 GACTATTCACGTTTGTCTTATTTAGGATACAAACTTTGGTTCTATCAAAAATAGTAGAAATGGAA
110 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAA-A-TAG---TGGAA
* * * * * **
162783 GGTAAAGCAGTTTT-TGC-GACACCAAAGTATCAATGTCTTGCATGCTAATGGAGGGAATGTGTT
169 GGAAAAGC--TTTTCTTCTGACACCAAAGCATCAATGTCTTGTATCCTAA-AAAGGGAATGTGTT
* * * * * * *
162846 TTTGGTTACCAACCTTGAAAAGAATAGAGG-CTATAACGAGAATCGATGCTTGTCTTTTTTAAGG
231 CTTGGTTCCCAATCTTGAAAAGAAT-G-GGACTGTTACGAGAATCGATGCTTGTCATATTTAAGG
* * * * * * * * * * **
162910 GATAAACTTT-ATATTAGGGAAAATAGGGCAAGGAAAATATTTCCATGCAAAGGAGAACCATCTG
294 GATGAATTTTGATTTTAAGGAAAATAGGGCAA-AAAAAGATTTCTATGCAAAAGAAAATCATCAA
* * * * * **
162974 TGTCATTAATCCTAATGAGGAAAATGTGTTTA-AGTACCTACTCGTAAAATGAATGAAGATCATT
358 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * ** *
163038 ACTAGAATCTATGTTTGTCTCATTTTAGGCGTGAACTTAGAGTTTAC-AA
423 ACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAA
* * * * * * * *
163087 AATTTAGTGAGAAGAAAGCCCTTCTTGTGACACCAAAGCATTAATATCATCTATCCTAATGAGAA
1 AATTT-GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
* * * * * *
163152 GTCTATGTTTATGGTGCCTAATCCCGAAAAGAATGGTGATTAGCAAGACTATTCATGTTGGTTTT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTT
* * *
163217 ATCTAAGAGACAAA-TTTGATTTTAT-AAAAATAGTGGAAGGAAAAGCTTTTCTTGTGACACCAA
129 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAA
* *
163280 AGCATCAATGTCTTGTGTCCTAAAAAAGCGAATGTGTTCTTGGTTCCTAATCTTGAAATCTTGAA
194 AGCATCAATGTCTTGTATCCT-AAAAAGGGAATGTGTTCTTGGTTCC----C----AATCTTGAA
* * *
163345 CAGAATGGGAACTGTTACGAGAATCAATGCTTGTCATATTTAGGGGATGAATTTTGATTTTAAGG
250 AAGAATGGG-ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGG
* * *
163410 AAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCCAATGAGG
314 AAAATAGGGCAAA-AAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * *
163475 AGAATGAGTTTATAGCGCCT-ATCGCAAAATGAAT-ATAGATCATTACT-GAAATCCATGTTTGT
378 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAG-AATCCATGTTTGT
163537 CTCATTTCAGGCACGAACTTAGACTTTACAAA
441 CTCATTTCAGGCACGAACTTAGACTTTACAAA
* * * * * *
163569 AATTTATGGGAAGAAAGCCTTTTTTGCGAAACCAAAGCAACAATATCGTGTTTGCTTATGAGAAA
1 AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * *
163634 ACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGTGATTAGCATGACTATTCGTGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTA
*
163699 TTTAAGAGACAAACTTTGATTTTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAAA
130 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAAA
* * **
163764 GCATCAATGTTTTGTGTCCTAAAAAAAGAATGTGTTCTTG
195 GCATCAATGTCTTGTATCCTAAAAAGGGAATGTGTTCTTG
163804 TGAAAGCTTA
Statistics
Matches: 6477, Mismatches: 1136, Indels: 473
0.80 0.14 0.06
Matches are distributed among these distances:
460 105 0.02
461 49 0.01
462 5 0.00
463 87 0.01
464 40 0.01
465 3 0.00
466 50 0.01
467 30 0.00
469 1 0.00
470 4 0.00
471 3 0.00
472 161 0.02
473 547 0.08
474 1314 0.20
475 1792 0.28
476 984 0.15
477 130 0.02
478 81 0.01
479 68 0.01
480 184 0.03
481 358 0.06
482 41 0.01
483 57 0.01
484 1 0.00
486 2 0.00
487 7 0.00
488 2 0.00
490 1 0.00
494 108 0.02
495 4 0.00
497 2 0.00
498 2 0.00
499 18 0.00
500 128 0.02
501 100 0.02
502 7 0.00
503 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (472 bp):
AATTTGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTAT
TTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGCTTTTCTTCTGACACCAAAG
CATCAATGTCTTGTATCCTAAAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGGAC
TGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA
AAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACG
AACTTAGACTTTACAAA
Found at i:160110 original size:949 final size:944
Alignment explanation
Indices: 155476--163773 Score: 8358
Period size: 949 Copynumber: 8.7 Consensus size: 944
155466 TCACAAAAAG
* * *
155476 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATGCTTATAAGAAG
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * *
155541 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGTGATTAGCAAGACTATTCATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTTTTA
* * * *
155606 CTTAAGAGAGAAACTTTGATTTTATCAAAAA-TAGTAGAAGGAAAAGCTTTTCTTGTGAGACCAA
130 TTTAAGAGACAAACTTTGATTTT-TCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACCAA
* * ** *
155670 AGCATCAATGTCTTGTGTCCTAAAAAAGCAAATGTGTCTTGGTTCCCAATCTTGAAAAGAATGGG
194 AGCATCAATGTCTTGTATCCTAAAAGAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAAT-GG
* * * * *
155735 CA-CTATTACGAGAATCGATCCTTGACATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
258 AAGCTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
* * * *
155799 ACAAAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGAG
323 GCAAAGAAAAGATTT-CATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
155864 TTTATAGCGCCTAATCACAAAATGAATA-TAGATCATTACT-GAAATCCATGTTTGTCTCATTTC
386 TTTATAGTGCCTAATCACAAAATGAA-AGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTC
* * **
155927 AGGCATGAACGTAAACTTTACAAAAATTTATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
449 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
* * *
155992 AATATCGTGTATGCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAAAATGGTGATTA
514 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTA
* * * *
156057 GCATGACTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGTGGAAGG
578 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAG
* * * ** * * *** **
156122 GAAAGCTTTTCTTCTGACACCAAAGCTTCAATGTTTTGTGTCCTAAAAAAAAAATGTGTTCTTGG
643 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATGCTAATGGAGGAATGTGTTCTTGG
* * * * * *
156187 TTCCCAATCTTGAAAAGAATGG-GCACTGTTACAAGAATCGATGCTTATCATATTTAAGGGATCA
708 TTCCCAATCTTGAAAAGAATGGAG-GCTATAACGAGAATCGATGCTTGTCATATTTAAGGGATGA
*
156251 ATTTTGATTTTAAGGAAAATAGGGCAAAAAATAGA-TTTCTATGCAAAAGAAAATCATCAATATC
772 ATTTTGATTTTAAGGAAAATAGGGCAAGAAA-AGATTTTC-ATGCAAAA-AAAATCATCAATATC
* *
156315 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTACTCACAAAATGAATGAAGATCATTACTA
834 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * *
156380 GAATTCTTGTTTATCTCATTTCAAGG-ATGAACTTAGACTGTACAAA
899 GAATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTACAAA
* * ** * * *
156426 ATTTGGTGGGATGAAAGCCTTTCTTGCAAAACCAAAGCATCAATGTCGAGTATCCTTATGAGAAA
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
** * * * * *
156491 ACTATGACTATGGTGCCTAA-CACTAAAAAGAAAGGGGATTCGTATGGCTATTCATGTTTGTCTT
66 ACTATGTTTATGGTGCCTAATC-CTGAAAAG-AATGGGATTAGTATGACTATTCATGTTTGTTTT
* * * * * * *
156555 ATTGAAGAGACAAACTTAGATTCTATCAAAGA-TAGTGGATGGAAAAGCTTTTTTTGCGACACCA
129 ATTTAAGAGACAAACTTTGATT-TTTCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACCA
* *** * * * * * *
156619 AAGCATCAGTGTGAGGCATGCTAAAGGAGGAAATGTGTTTTTGGTTCCTAAACTTGAAAAGAATG
193 AAGCATCAATGTCTTGTATCCTAAAAGAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATG
* * ** * *
156684 GAGGTTGTAGTGAGAATC-ATTGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAGGGAAAATA
257 GAAGCTGTAACGAGAATCGA-TGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * * *
156748 GGGCGAAGAAAAGATTGTCGTGCAAAAAGAATCATCAGTATCATTTATCCTAATGAGGAGAATGT
321 GGGCAAAGAAAAGATT-TCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
156813 GTTTATAGTGCCTAATCATAAAAT-AAATAAAGATCATTACTAAAATCCATGTTTGTCTCATTTG
385 GTTTATAGTGCCTAATCACAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTC
** * * * ***
156877 AGGCACAAACTTGGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGGAACCAAAATGTC
449 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
* * ** **
156942 AATATCGTGTATCTTTATGAGAAAACTATGTTTATGGTGCCTAATTATGAATTGAATAGGGATTA
514 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTA
* * * * * * ** *
157007 GTATGAGTATTCTTGTTTTTCTTATCTAATG-GATAAACTTTGATTTTATCAAAAACGGTGGACA
578 GTATGACTATTCATGTTTGTCTTATTTAA-GAGACAAACTTTGATTCTATCAAAAATAGTGGAAA
* * *
157071 GAAAAGCTTTTCTTGTGACACCAAAGTATCAATGTCAT-TCATTCTAATGAAGGGAATGTGTTCT
642 GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGT-ATGCTAATGGA-GGAATGTGTTCT
* * * * *
157135 TGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATACTTATCATATTTAAGGGAT
705 TGGTTCCCAATCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGCTTGTCATATTTAAGGGAT
* * * * * * * *
157200 GAACTTTAATTTTAAAGAAAATAGGGCAAAGAAAACATTTTCATGCAAAAGAAAACCTTCAGTGT
770 GAATTTTGATTTTAAGGAAAATAGGGC-AAGAAAAGATTTTCATGCAAAA-AAAATCATCAATAT
* * ** *
157265 CATTTATCCTTATGAGGAAAACATGTTTATAGTGCCTACTCACAAAATGAATGAAGATCATTACT
833 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*
157330 AGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAA
898 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * * * *
157377 AATTGGTGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCGTCAATGTTGTGTATCCTTATAAGAA-
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * ** * *
157441 ACTATGATTATGGTGCCTAATCCTGAAAAGAATAGGATTAGTACAACTACTCATATTTGTTTTAT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTTTTAT
* * * * *
157506 TTAAGAGACAAACTTTGATTCTATGAAAAACGA-TGGAAGGAAAAGCTTTTTTTGCGACACCAAA
131 TTAAGAGACAAACTTTGATT-TTTCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACCAAA
* * * * * *
157570 ACATTAATGTCATGTATGCTAACAGAGGGAATGTGTTTGTGGTTCCCAATCTTGGAAAGAATGGA
195 GCATCAATGTCTTGTATCCTAAAAGAGGGAATGTGTTT-TGGTTCCCAATCTTGAAAAGAATGGA
* * * * *
157635 GGCTGTAACGAGAATCGATGCTTCTCTTATTTAAAGGATGAATTTTGGTTTTAAGGAAAATGAGG
259 AGCTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGG
* * * * * *
157700 TG--ATGAAAAGATGTTCGTGCAAAAAAAAATCATTAGTATCATTTATCCTAACGAGGAAAATGT
323 -GCAAAGAAAAGAT-TTCATGC-AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * ** * * * * *
157763 GTTTATGGTGCCTAATCGCAAAATGAATCAAGCTCATTACAAGAA-CCTATGTTTATCTCCTTTG
385 GTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTC
** * * ** * * *
157827 AGGCACAAACTTAGCCTTTACAAAAATTAGTTAGAAGAAAGCCTTTCCTACGAAACCAAAGCGTC
449 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
* * * * * *
157892 AATATCATGTATCCTTATGAAAAGACTGTGTTTACGGTGCCTAATCCTGTATAGAATGGGGATTA
514 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTA
* * * * * ** *
157957 GTATGACTATTCATGTTCGTTTTTTTTAAGGGACAAACTTTGATTCTATGAAAAGCAGTGGATAG
578 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAG
* * * * *
158022 AAAAGCTTTTCTTGTGACACCAAAGGATCAATGTCTTGTATTCTAAAAGG-GGAATATGCTT-TT
643 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATGCT-AATGGAGGAATGTG-TTCTT
*
158085 GGTTCCTAATCTTGAAAAGAATGGA-G--A-AAC----A---ATGCTTGTCATATTTAAGGGATG
706 GGTTCCCAATCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGCTTGTCATATTTAAGGGATG
* * * * * * *
158139 AATTTTAATTCTAAGTAAAATACGGCAAAAAAAGATTTTCATGTAAATGAAAATCATCAATATCA
771 AATTTTGATTTTAAGGAAAATAGGGCAAGAAAAGATTTTCATGCAAA-AAAAATCATCAATATCA
* * * * * * *
158204 TTTATTCTAACGAAGAGAATGTGTTTACAGCGTCTAATCACAAAATGAATGAAGATAATTACTAG
835 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
** *
158269 AATCCATG-TT-TCTCATTTCCGACACGAACTTAGACTTTACAAA
900 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
*
158312 AATTGGTGGGAAGAAAG-CTTTCTTGTGAAACTAAAAG-ATCAATATCGTGTATCCTTATGAGAA
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAA
* * * * * *
158375 GACTATGATTATGGTGCCTAGTCCTAAAAAGAATAGGGATTAGTACGACTATTCAAGTTT-TTCA
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTT-T
* * * ** * *
158439 TATTTAGGATATAAACTTTGATTCCATCAAAAACAGTGGAAGTGGAAGGTAAAGCTTTTTTTGTG
128 TATTTAAGAGACAAACTTTGATT-TTTCAAAAAC--T---AGTGGAAGGAAAAGCTTTTCTTGTG
* * * * ** * *
158504 GCACCAAAGCATCAATGTCTGGAATGCTAATGGAGGGAATGTGTTTTTGGTTACCAACCTTGAAA
187 ACACCAAAGCATCAATGTCTTGTATCCTAAAAGAGGGAATGTG-TTTTGGTTCCCAATCTTGAAA
* * * * * * ** * * * **
158569 AGAATAGAGGTTATAACAATAATCGATGCTTGTTTTACTTAAGGGATAAACTTTGACATTAAGGA
251 AGAATGGAAGCTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * ** * * *
158634 AAATAGGGCAAGGAAAATATTTCCATGCAAAAGAAAACCATCTGTGTCATTAATCCTAGTGAGGA
316 AAATAGGGCAAAGAAAAGATTT-CATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGA
* * * * * * * * * * * *
158699 AAATGTGTTCA-AGTGCCTACTCGCGAAATGAATGAAGCTCATTACAATAATCTATGTCTATCTC
379 GAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* ** * * * * * * * ** *
158763 ATTTCACGTGTGAACTTAAAGTTAACAAAATTTAGTGAGAGGAAAGCCTTTGATGTGAAACCAAA
444 ATTTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAA
* * * *
158828 GCATTAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
509 GCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GG
* * * * * * *
158893 GATTAGTATGACTATTTATGTTTGTCATATTTTAGAGAGAAACTTTGATTCCATAAAAAATGGTG
573 GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTG
* * * * * * * *
158958 GAAAGAAAACCTCTTCTTGCTG-CACCAAAACATCAATGTCATATATCCTAATGAAGAGACTATG
638 GAAAGAAAAGCTTTTCTTG-TGACACCAAAGCATCAATGTCATGTATGCTAATGGAG-GAATGTG
* ** * *
159022 TTCTTGGTTCCCAATCTTGAAAA-AGATGG-GGTCTGTTTCGAGAATCGATGCTTGTCTTACTTA
701 TTCTTGGTTCCCAATCTTGAAAAGA-ATGGAGG-CTATAACGAGAATCGATGCTTGTCATATTTA
*** *
159085 TCTGATGAACTTTGATTTTAAGGAAAATTA-GGCAAAGAAAAGATTTTCATGCTAAAAAAAATCA
764 AGGGATGAATTTTGATTTTAAGGAAAA-TAGGGC-AAGAAAAGATTTTCATGC-AAAAAAAATCA
* * *
159149 TCAATATCATTTATCCTAACT-AGGAGAATGTGCTTATAGTGCCTAATTACCAAATGAATGAAGA
826 TCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * *
159213 TCATTACTAGATTCCTTGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAA
890 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * *
159268 AATTAGTGGGAAGAAAGCCTTTCTTG-GAAAACCAAAGCGTCAAT-GCTGTGTATCCTTATGAGA
1 AATTGGTGGGAAGAAAGCCTTTCTTGTG-AAACCAAAGCATCAATATC-GTGTATCCTTATGAGA
* * * * *
159331 AAACTATGATTATGGCGCCTAATCCTGAAAAGAATTGGGATTAGTACGACTATTCATATTTGTTT
64 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGACTATTCATGTTTGTTT
* * *
159396 TATTTAAGAGACAAACTTTGATTTGTTCAAAAACT-GTGGAAGGCAAAGCTTTTTTTGCGACACC
128 TATTTAAGAGACAAACTTTGATTT-TTCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACC
* ** * * *
159460 AAAGCATCAATGTCATGT-TCTCTAACGGAGGGAATCTGTTTTGGATCCCGATCTTGAAAAGAAT
192 AAAGCATCAATGTCTTGTATC-CTAAAAGAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAAT
* ** * *
159524 AGAAGCTGTAACGAGAATCGATGCTTGTTTTATTTAAAGGATGAATTTTGATTATAAGGAAAATA
256 GGAAGCTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * ** * * * *
159589 AGGCAAAGAAAAGACTTTCATACAAAAAAAATCATCGGTATCATTTATCATAACGAGGATAATGC
321 GGGCAAAGAAAAGA-TTTCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
** * * * * *
159654 GTAAATAGTGCCTAATCACAAAATGAAAGAAGCTCATTACTAGAATCTATGTTTGTATCCTTTGA
385 GTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCA
* * * * * * *
159719 GGCATGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAGACTTTCTTGCGAAATCAATGCGTTA
450 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
** * * *
159784 ATATTTTGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAGGATTGGGAATTA-
515 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAG
* * *
159848 TATGACTATTCATGTTTGTCTTACTTAAGGGACAAACTTTGATTCTATGAAAAATAGTGGATAAG
579 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGA-AAG
* * * *
159913 -AAAGCTTTTCTTGTGACATCAAAGCATCAATGTCATGTGTGCTAATGGCGGAAATGTGTTTTTG
643 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATGCTAATGGAGG-AATGTGTTCTTG
** * *
159977 GTTCCCAATCTTGAAAAGAATGGAGGCTATAATAAGAATTGATGCTTTGTCTTATTTAAGGGATG
707 GTTCCCAATCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGC-TTGTCATATTTAAGGGATG
*** *
160042 AATTTTGATTTTAAGGAAAATAGGGCGAAGAAACA-ATTTTTGGGCAAAAAAAATCATCAGTATC
771 AATTTTGATTTTAAGGAAAATAGGGC-AAGAAA-AGATTTTCATGCAAAAAAAATCATCAATATC
* *
160106 ATTTATCGTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATGAAT-AAGATCATTACTA
834 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* *
160170 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAG
899 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * *
160216 AATTGGTGGGAAGAAAGCCTTTTTTGCGAAACCAAAGCATCAATATCGT-TGATCTTTATTAGAA
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGT-ATCCTTATGAGAA
* * * * * *
160280 GACTATGTTTATGGTGCCAAATCATGAATATAACGGGGATTAGTATGACTATTCATGTTTATTTT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGACTATTCATGTTTGTTTT
** * * * *
160345 ATTTGTGAGACAAAATTTGATTTTATCAAAAACGA-CGGATA-GAAAAGCTTTTCTTGTGACACT
129 ATTTAAGAGACAAACTTTGATTTT-TCAAAAACTAGTGGA-AGGAAAAGCTTTTCTTGTGACACC
* *
160408 AAAGCATCAATGTCTTGTATCCT-AAAGAAGAGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAA
192 AAAGCATCAATGTCTTGTATCCTAAAAG-AGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAA
* * * *
160472 TAG-AGACTGCT-ATGAGAATCTATGCTTGTCATATTT-AGGGCATGAACTTTGATTTTAAGGAA
255 TGGAAG-CTG-TAACGAGAATCGATGCTTGTCATATTTAAGGG-ATGAATTTTGATTTTAAGGAA
**
160534 AATAGGGCAAAGAATGGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
317 AATAGGGCAAAGAAAAGA-TTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAG
* ** * * * *
160599 AATGCGTTTATAGCACCTAATCACAAAAAGAATA-TAGATCATTTCT-GAAATCTATGTTTGTCT
380 AATGTGTTTATAGTGCCTAATCACAAAATGAA-AGAAGATCATTACTAG-AATCCATGTTTGTCT
* * **
160662 CATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGTTTTTCTTGCGAAACCAA
443 CATTTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAA
* * * * * *
160727 AGCATCAATTTTGTGTATGCATATGAGAAGACTATGTTTATTGTGCCTAATCCCGAAAAGAATGG
508 AGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * * * * *
160792 TGATTAGCATGACTATTCATGTTGGTTTTATTTAAGAGACAAA-TTTGATTTTAT-AAAAACAAT
573 -GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGT
* * * ***
160855 GGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTGTGCTAAAAAAGTGAATGTG
637 GGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATGCTAATGGAG-GAATGTG
* * * * * *
160920 TTCTTGGTTCCTAATCTTGAACAGAAT-GAGCACTATTACGAGAATCAATGCTTGTCATATTTAG
701 TTCTTGGTTCCCAATCTTGAAAAGAATGGAG-GCTATAACGAGAATCGATGCTTGTCATATTTAA
* *
160984 GGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATC
765 GGGATGAATTTTGATTTTAAGGAAAATAGGGC-AAGAAAAGATTTTCATGCAAAA-AAAATCATC
* **
161049 AATATCATTTATCCTAATGAGGAGAATGAGTTTATAGCACCT-ATCACAAAATGAAT-ATAGATC
828 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATC
**
161112 ATTACT-GAAATCCATGTTTGTCTCATTTCCGGCACGAACTTAGACTTTACAAA
892 ATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
** * * * *
161165 AATTTATGAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCATGTATGCTTATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* *
161230 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGTGATTA-TCATGACTATTCGTGTTTGTCTT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGT-ATGACTATTCATGTTTGTTTT
*
161294 ATTTAAGAGACAAACTTTGATTTTATCAAAAA-TAGTGGAAGGAAAAGCTTTTCTTCTGACACCA
129 ATTTAAGAGACAAACTTTGATTTT-TCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACCA
* * ** *
161358 AAGCATCAATGTTTTGTGTCCTAAAA-AAAGAATGTGTTCTTGGTTGCCAATCTTGAAAAGAATG
193 AAGCATCAATGTCTTGTATCCTAAAAGAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAAT-
* * * * *
161422 GGCA-CTGTTACAAGAATCGATGCTTATCATATTTATGGGATGAATTTTGATTTTAAGGAAAATA
256 GGAAGCTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * ** *
161486 GGGCAAAGAATAGATTTCTATGCAAAGAAAAA-CATCAATATCTTTTATTATAACGAGGAGAATG
321 GGGCAAAGAAAAGATTTC-ATGCAAA-AAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * * *
161550 TGTTTATAGTGTCTACTCACAAAATGAATGAAGGTCATTACCAGAATCCATGTTTGCCTCATTTC
384 TGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTC
* * * *
161615 AAGG-ATGAACTTAAACTATAC-AAAATTGGTGGGAAGAAAGCCTGTCTTGCGAAACCAAAGCGT
449 -AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* * * * * * * *
161678 CAATGTTGTGTATCCTTATAAGAAAACTATGATTATGGTGCCTATTCTTGAAAAGAATAGGATTA
513 CAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTA
* * * * *
161743 GTATGACTATTCATATTTGTTTTATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGAAGG
578 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAG
* * * * * *
161808 AAAAGCTTTTCTTGCGACACCAAAACATTAATGTCATGTATGGTAACT-GAGGGAATATGTTTTT
643 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATGCTAA-TGGA-GGAATGTGTTCTT
* *
161872 GGTTCCCAATCTTGAAAAGAATGAAGGCTATAACGAGAATCGATGCTTGTCTTATTTAAGGGATG
706 GGTTCCCAATCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGCTTGTCATATTTAAGGGATG
*
161937 AATTTTGATTTTAAGGAAAATGAGGTG-AAGAAAAGATTTTCGTGCAAAACAAAAATCATCAATA
771 AATTTTGATTTTAAGGAAAAT-AGG-GCAAGAAAAGATTTTCATGC-AAA-AAAAATCATCAATA
* * *
162001 TCATTTATCCT-ATCGAGGAAAATGTGTTTATGGTGCCTAATCGA-AAAATGAATGAAGCTCATT
832 TCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATT
* * * * * *
162064 AGTAGAGTCTATGTTTATCTCATTTGAGGCACAAACTTAGCCTTTACAAA
895 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* ** * ** * * * * *
162114 AATTAGTTAGAAGAAAGCCTTTCCTACGAAACCAAAGCGTTAATTTCATGTATCCTTATGAAAAG
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * *
162179 ACTATGTTTACGATTCCTAATCCTGAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTTTTA
* * * *
162244 TTTAAGGGACAAACTTTGATTCTATGAAAAGC-AGTGGACA-GAAAAGCTTTTCTTGTGACACCA
130 TTTAAGAGACAAACTTTGATT-TTTCAAAAACTAGTGGA-AGGAAAAGCTTTTCTTGTGACACCA
* * *
162307 AAGGATCAATGTCTTGTAT-CTGAAAAG-GGGAATGTGCTCTTGGTTCCTAATCTTGAAAAGAAT
193 AAGCATCAATGTCTTGTATCCT-AAAAGAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAAT
* * * * * * *
162370 GG-AGACTGTTACAAGAAACAATGCTTGTCATATTTAAGGGATGAATTTTAATTCTAAGTAAAAT
256 GGAAG-CTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
** ** ** * *
162434 AACGCAAAGAAAAGATTTTCATATAAATGAAATCATCAATAT-ATTTTATTCTAACGAGGAGAAT
320 AGGGCAAAGAAAAGA-TTTCATGCAAAAAAAATCATCAATATCA-TTTATCCTAATGAGGAGAAT
* * * * * *
162498 GTGTTTATGGTGCTTAATCACAAAATGAATGAAGATAATTACTAGAATCCATGTTTCTTTCATTT
383 GTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA-TT
* *
162563 TC-GACATGAACTTAGACTTTACAAAAATTTGTGGGAAGAAAACCTCTTCTTGCGACCTTATGCC
447 TCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAA-----------G-CCTT-T--C
* * *
162627 TTTTTTGCGAAACTAAAGCATCAATATCGTGTATCCTTATCAGAAGACTATGATTATGGTGCCTA
496 ----TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
** * * * * * *
162692 GCCCTAAAAAGAATAGGGATTAGTTTGACTATTCACGTTTGTCTTATTTAGGATACAAACTTTGG
557 ATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * *
162757 TTCTATCAAAAATAGTAGAAATGGAAGGTAAAGCAGTTT-TTGCGACACCAAAGTATCAATGTCT
621 TTCTATCAAAAATAGTGGAAA--G-A---AAAGC-TTTTCTTGTGACACCAAAGCATCAATGTCA
* * * * *
162821 TGCATGCTAATGGAGGGAATGTGTTTTTGGTTACCAACCTTGAAAAGAATAGAGGCTATAACGAG
679 TGTATGCTAATGGA-GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATAACGAG
* * * * * * *
162886 AATCGATGCTTGTCTTTTTTAAGGGATAAACTTT-ATATTAGGGAAAATAGGGCAAGGAAAATAT
743 AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA-GAAAAGAT
* * * * ** * * * *
162950 TTCCATGCAAAGGAGAACCATCTGTGTCATTAATCCTAATGAGGAAAATGTGTTTA-AGTACCTA
807 TTTCATGCAAA-AAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* ** * * **
163014 CTCGTAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTTAGGCGTGAACTTAGA
871 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
*
163079 GTTTACAAA
936 CTTTACAAA
* * * * * * * * *
163088 ATTTAGTGAGAAGAAAGCCCTTCTTGTGACACCAAAGCATTAATATCATCTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * *
163153 TCTATGTTTATGGTGCCTAATCCCGAAAAGAATGGTGATTAGCAAGACTATTCATGTTGGTTTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTTTTA
*
163218 TCTAAGAGACAAA-TTTGATTTTAT-AAAAA-TAGTGGAAGGAAAAGCTTTTCTTGTGACACCAA
130 TTTAAGAGACAAACTTTGATTTT-TCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACCAA
* * *
163280 AGCATCAATGTCTTGTGTCCTAAAAAAGCGAATGTGTTCTTGGTTCCTAATCTTGAAATCTTGAA
194 AGCATCAATGTCTTGTATCCTAAAAGAGGGAATGTGTT-TTGGTTCC----C----AATCTTGAA
* * * *
163345 CAGAATGGGAA-CTGTTACGAGAATCAATGCTTGTCATATTTAGGGGATGAATTTTGATTTTAAG
250 AAGAAT-GGAAGCTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
* *
163409 GAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCCAATGAG
314 GAAAATAGGGCAAAGAAAAGATTT-CATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAG
* * * *
163474 GAGAATGAGTTTATAGCGCCT-ATCGCAAAATGAATA-TAGATCATTACT-GAAATCCATGTTTG
377 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-AGAAGATCATTACTAG-AATCCATGTTTG
* ** *
163536 TCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTTATGGGAAGAAAGCCTTTTTTGCGAAAC
440 TCTCATTTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * * *
163601 CAAAGCAACAATATCGTGTTTGCTTATGAGAAAACTATGTTTATGGTGCCTTATCCTAAAAAGAA
505 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * *
163666 TGGTGATTAGCATGACTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAT
570 TGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* *
163731 AGTGGAAGGAAAAGCTTTTCTTCTGACACCAAAGCATCAATGT
634 AGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
163774 TTTGTGTCCT
Statistics
Matches: 6126, Mismatches: 1003, Indels: 433
0.81 0.13 0.06
Matches are distributed among these distances:
934 36 0.01
935 83 0.01
936 51 0.01
937 91 0.01
938 42 0.01
940 4 0.00
941 252 0.04
942 206 0.03
943 3 0.00
945 40 0.01
946 98 0.02
947 257 0.04
948 504 0.08
949 1382 0.23
950 1330 0.22
951 470 0.08
952 11 0.00
953 37 0.01
954 97 0.02
955 31 0.01
956 52 0.01
957 114 0.02
958 4 0.00
959 1 0.00
960 2 0.00
961 124 0.02
962 1 0.00
963 3 0.00
964 1 0.00
966 1 0.00
967 1 0.00
968 4 0.00
969 1 0.00
970 65 0.01
971 60 0.01
972 56 0.01
973 29 0.00
974 185 0.03
975 42 0.01
976 28 0.00
977 113 0.02
978 3 0.00
980 11 0.00
981 155 0.03
982 43 0.01
983 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (944 bp):
AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTTTTAT
TTAAGAGACAAACTTTGATTTTTCAAAAACTAGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAG
CATCAATGTCTTGTATCCTAAAAGAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAAG
CTGTAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
AAGAAAAGATTTCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
AGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATG
AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTT
TTCTTGTGACACCAAAGCATCAATGTCATGTATGCTAATGGAGGAATGTGTTCTTGGTTCCCAAT
CTTGAAAAGAATGGAGGCTATAACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
TTAAGGAAAATAGGGCAAGAAAAGATTTTCATGCAAAAAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAAA
Found at i:164595 original size:13 final size:13
Alignment explanation
Indices: 164577--164602 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
164567 AATTTTTTTG
164577 TGTATCGATACAT
1 TGTATCGATACAT
164590 TGTATCGATACAT
1 TGTATCGATACAT
164603 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:165293 original size:40 final size:41
Alignment explanation
Indices: 165247--165337 Score: 107
Period size: 39 Copynumber: 2.3 Consensus size: 41
165237 TTTTCTTTTT
*
165247 CCCTTAACTAAAG-TAATTTTAACAAATTCGTACATTCTCC
1 CCCTTAACTAAAGATAATTTTAACAAATTCATACATTCTCC
* * *
165287 CCCTTAA-T-AAGATAATTTTAGCAAATTTATGCATTCTCC
1 CCCTTAACTAAAGATAATTTTAACAAATTCATACATTCTCC
* *
165326 CCTTTTACTAAA
1 CCCTTAACTAAA
165338 AAAATCTCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
38 3 0.07
39 29 0.69
40 8 0.19
41 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.37
Consensus pattern (41 bp):
CCCTTAACTAAAGATAATTTTAACAAATTCATACATTCTCC
Found at i:171430 original size:21 final size:21
Alignment explanation
Indices: 171401--171445 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
171391 AAGTTTTTAT
*
171401 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
171421 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
171443 TTT
1 TTT
171446 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:173608 original size:20 final size:19
Alignment explanation
Indices: 173583--173622 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
173573 TCCCGTGTGA
*
173583 ATGTATCGATACAATTTTTG
1 ATGTATCGATA-AATATTTG
173603 ATGTATCGATAAATATTTG
1 ATGTATCGATAAATATTTG
173622 A
1 A
173623 AAATATAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (19 bp):
ATGTATCGATAAATATTTG
Found at i:175087 original size:475 final size:474
Alignment explanation
Indices: 174097--181935 Score: 7869
Period size: 476 Copynumber: 16.5 Consensus size: 474
174087 TCCTAACATC
* * * ** * *
174097 TTGGATCCCAATCTTGAAAAGAATGG-GCACTGTTACAAGAATCGATGCTTATCATATTTAAGGG
1 TTGGTTCCCAATCTTGAAAAGAATGGAG-GCTGTAATGAGAATC-ATGCTTGTCTTATTTAAGGG
*
174161 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGA-TTTCTATGCAAAAGAAAATCATCAA
64 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAA
* * * *
174225 TATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTACTCACAAAATGAATGAA-AGCGAT
128 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-AT
* * *
174289 TACCAGAATCCATGTTTGTCTCATTTCAAGG-ATGAACTTAAACTATT-C-AAAATTGGTGGGAT
192 TACTAGAATCCATGTTTGTCTCATTT-AAGGCATGAACTTAGACT-TTACAAAAATTGGTGGGAA
* * * *
174351 GAAAGCC-TTCTTGTGAAACCAAAGCATCAATGTCGAGTATCCTTATGAGAAAACTATG-TCTAT
255 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGAT-TAT
* * * *
174414 GGTGCCTAA-CACTAAAAAGAATGGGGATTAGTATGGCTATTCTTGTTTGTCTTATTTAAGAGAT
319 GGTGCCTAATC-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
174478 AAA-TTTAGATTCTATTAAAGATAGAGGAAGGAAAAGCTTTTTTTGTGGCACCAAAGCATCAGTG
383 AAACTTT-GATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATG
* * * * * *
174542 TGAGGCATGCTAAAGGAGGAAATGTGTTT
447 TCATGTATCCT-AATGAGGGAATGTGTTT
* *
174571 TTGGTCCCCAATCTTGAAAAGAATGGAGGCTGTAGTGAGAATCATTGCTTGTCTTATTTAAGGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATCA-TGCTTGTCTTATTTAAGGGA
* * * * *
174636 TGAATTTTAATTTTAAGGAAAAGAGGGCAAAGAAAAGATTTTCGTGCAAAAAAAAATCATCAGTA
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* * * *
174701 TCATTTATCCTAACGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATAAAGATCATTAC
130 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* *
174766 TAGAATTCATGTTTGTCTCATTTGAGGCA-GAAACTTAGACTTTA-AAAAATTTGGTGGGAAGAA
195 TAGAATCCATGTTTGTCTCATTTAAGGCATG-AACTTAGACTTTACAAAAA-TTGGTGGGAAGAA
* * * * *
174829 AGCCTGTCTTGCGAAACCAAAGCATCAATGTTGTGTATCCTTATAAGAAAACTATGATTATGGTG
258 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTG
* * * * *
174894 CCTATTCTTGAAAAGAAT-AGGATTAGTATGACTATTCATATTTGTTTTATTTAAGAGACAAACT
323 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * *
174958 TTGATTCTATGAAAAATGGTGGAAGGAAAAGCTTTTTTTGCGACACCAAAACATTAATGTCATGT
388 TTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGT
** *
175023 ATGGTAACTGAGGGAATATGTTT
453 ATCCTAA-TGAGGGAATGTGTTT
*
175046 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTATAATGAGAATCGATGCTTGTCTTATTTAAGGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATC-ATGCTTGTCTTATTTAAGGGA
** *
175111 TGAATTTTTGATTTTAAGGAAAATGAGGTG--AAGAAAAGATTTTTGTGCAAAACAAAAATCATC
65 TGAA-TTTTGATTTTAAGGAAAAT-AGG-GCAAAGAAAAGATTTTCATGCAAAA-GAAAATCATC
* * * *
175174 AATATCATTTATCCT-ATCGAGGAAAATGTGTTTATGGTGCCTAATCGCAAAATGAATGAAGCTC
126 AATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * ** * * **
175238 ATTAGTAGAATCTATGTTTATCTCATTTGAGGCACAAACTTAGCCTTTACAAAAATTAGTTAGAA
190 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * * * * *
175303 GAAAGCCTTTCCTACGAAACCAAAGCGTCAATTTCATGTATCCTTATGAAAAGACTATGTTTACG
255 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATG
* * *
175368 ATGCCTAATCCTGAATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGGGACAA
320 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* *** * * *
175433 ACTTTGATTCTATGAAAAGCAGTGGACA-GAAAAGCTTTTCTTATGGCACCAAAGGATCAATGTC
385 ACTTTGATTCTATCAAAAATGGTGGA-AGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
* * * *
175497 TTGTATCCTAA-AAGGGGAATGTGCTC
449 ATGTATCCTAATGA-GGGAATGTGTTT
* * * ** * **
175523 TTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAAACAATGCTTGTCAGATTTAAGGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATC-ATGCTTGTCTTATTTAAGGGA
* * * ** ** *
175588 TGAATTTTAATTCTAAGTAAAATAACGCAAAGAAAAGATTTTCCATATAAATGAAAATCATCAAT
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAAT
* * * * * *
175653 ATAATTTATTCTAACGAGGAGAATGTGTTTATGGTGCTTAATCACAAAATGAATGAAGATAATTA
129 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * ** *
175718 CTAGAATCCATGTTTCTTTCATTTTCGACATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
194 CTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAG---
* *
175783 ACCTCTTCTTGCGACCTATGCCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTTATCAG
256 A------------A---A-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* ** * * * *
175848 AAGACTATTATTATGGTGCCTAGCCCTAAAAAGAATAGGGATTAGTTTGACTATTCACGTTTGTC
305 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * *
175913 TTATTTAGGATACAAACTTTGGTTCTATCAAAAACAATGGAAATGGAAGGTAAAGCAGTTT-TTG
370 TTATTTAAGAGACAAACTTTGATTCTATC--AAA-AATGG---TGGAAGGAAAAGC-TTTTCTTG
* * *
175977 TGACACCAAAGTATCAATGTCATGCATACTAATGGAGGGAATGTGTTT
428 TGACACCAAAGCATCAATGTCATGTATCCTAAT-GAGGGAATGTGTTT
* * * * * * *
176025 TTGGTTACCAACCTTGAAAAGAGTAGAGGCTATAACGAGAATCGATGCTTGTCTTTTTTAAGGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATC-ATGCTTGTCTTATTTAAGGGA
** ** * * * * * * * ** *
176090 T-AAACTT-ATACTAAGAAAAATAGGGCAAGGAAAATATTTCCATGCAAAGGAGAACCATCTGTG
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* * * * *
176153 TCATTAATCCTAATGAGGAAAATGTGTTTA-AGTACCTACTCGCAAAATGAATGAAGATCATTAC
130 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * * *
176217 TAGAATCTATGTTTGTCTCATTTCAGGCGTGCACTTAGAGTTTACAAAATTTAGTGAGAAGAAAG
195 TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* * * * * ** *
176282 CCTTTCTTGTGAAACCAAAGCATTAATATCATCTATCCTAATGAGAAGTTTATGTTTATGGTGCC
260 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCC
* * * *
176347 TAATCCTGAAAAGAATCGGGATTAGTGTGACTATTTATGTTTGTCATATTCT-AGAGACAAACTT
325 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT-TAAGAGACAAACTT
* * * * * * * *
176411 TGATTCCATAAAAAATGGTGGAAAG-AAACCTCTTCTTGCTG-CACCAAAACATTAATGTCATAT
389 TGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTG-TGACACCAAAGCATCAATGTCATGT
* * * *
176474 ATCCTAATGAAGAGACTATGTTC
453 ATCCTAATG-AGGGAATGTGTTT
* **
176497 TTGGTTCCCAATCTTGAAAA-AGATGG-GGTCTGT-TTCGAGAATCGATGCTTGTCTTATTTATC
1 TTGGTTCCCAATCTTGAAAAGA-ATGGAGG-CTGTAAT-GAGAATC-ATGCTTGTCTTATTTAAG
* ** * * *
176559 TGATGAGCTTTGATTTTAAGGAAAATTGGGCAAAGAAAAGATTTTCACGCTAAAA-AAAATCATT
62 GGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATC
* * * * * *
176623 AGTATCAATTATCCTAACT-AGGAGAAAGTGTTTATAGTGCCTAATTACCAAATGAATGAAGATA
126 AATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
176687 ATTACTAGATTCCTTGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAA
190 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * *
176752 GAAAGCCTTTCTTG-GAATACCAAAGCATCAATATCATCTATCCTAATAAGAAGACTATGTTTAT
255 GAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTAT
* * * * * *
176816 GGTGCCTAATTCTGAAAAGAATAGGGATTAGTATGACAATTTATGTTTGTCATATTTTAGAGACA
319 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
** * * * * **** *
176881 AACAATGATTCCT-TAAAAAATGGTGGAAAGAAAACCTCTTCTTGCCTTACCAAAACATCAATGT
384 AACTTTGATT-CTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
* * * * *
176945 CATATATCCTAATGAAGAGACTATGTTC
448 CATGTATCCTAATG-AGGGAATGTGTTT
* * * * **
176973 TTGGTTCCCAATCTTGAAAA-AGATAGGA-TCTGT-TTCGAGAATTGATGCTCGTCTTATTTATC
1 TTGGTTCCCAATCTTGAAAAGA-AT-GGAGGCTGTAAT-GAGAA-TCATGCTTGTCTTATTTAAG
* * ** * * *
177035 TGATGAACTTTGATTTTAAAAAAAAATTGGGCAAAGAAAAGATTTTCCTGCTAAAA-AAAATTAT
62 GGATGAATTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCAT
* * * * * *
177099 CAGTATCATTTATCTTAATTAGGAAAATGTGTTTATAGTGCCTAATTACCAAATGAATGAAGATC
125 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
177164 ATTACTAGATTCCTTGTTTGTCTCATTTAAGGCATGAACTTAGACTTTGCAAAAATTAGTGGGAA
190 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * *
177229 GAAAGCCATTCTTG-GAAAACCAAAGCATCAATGTTGTGTATCCTTATGAGAAAACTATGATTAT
255 GAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTAT
** * * * * *
177293 GGCACCTAATCTTGAAAAGAATTGGGATTAGTATGAGTATTCATATTTGTTTTATTTAAGAGACA
319 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * *
177358 AACTTTGAATCGT-TCAAAAACT-GTGGAAGGAAAAGCTTTTTTTGCGACACCAAAGCATCAATG
384 AACTTTGATTC-TATCAAAAA-TGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATG
* * * *
177421 TCGTGCA-CGCTAACGGAGGGAATCTGTTT
447 TCATGTATC-CTAA-TGAGGGAATGTGTTT
* * * * * *
177450 TTGGATGCCAATCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGCTTGTTTTATTTAAAGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATC-ATGCTTGTCTTATTTAAGGGA
* * * * * * *
177515 TGAATTTTGATTATAAGGAAAATAAGGCGAAGAAAAGACTTTCGTGCAAAA-AAAATTATCAGTA
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* *
177579 TCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGCTCATTAC
130 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * **
177644 T-GAAATCTATGTTTGTCTCCTTTAAGGCATGAACTTAGACTTTATAGCAATTGGTGGGCAA-AA
195 TAG-AATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAGAA
* * * *
177707 AGACTTTCTTGTGAAACCAAAGCATCAATATCTTGTATCCTTATGAGAAGACTATGTTTATGGTG
258 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTG
* * * * *
177772 CCTAATCCTGAAAGGATTGGGGATTGGTATGACTATTCATGTTTGTCTTACTTAAGGGACAAACT
323 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
177837 TTGATTCTATGAAAAATAGTGGATA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
388 TTGATTCTATCAAAAATGGTGGA-AGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * *
177901 TGTGCTAAAGGAGGGAATGTGTTT
452 TATCCT-AATGAGGGAATGTGTTT
** * **
177925 TTGGTAGCCAATCTTGAAAAGAATGGAAGCTGTAATGAGAATTGTTGCTTGTCTTATTTAAGGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAA-TCATGCTTGTCTTATTTAAGGGA
** * ** * *
177990 TGAATTTTGATTTTAAGGAAAATAGGGTGAAGAAACGATTTTCGGGCAAAAAAAAACCATCAATA
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* ** *
178055 TCTTTTATCCTAACAAGGAGAATGTGTTCATAGTGCCTAATCACAAAATGAAT-AAGATCATTAC
130 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * *
178119 TAGAATCCATGTTTGTCTCATTTGAGGAACGAGCTTAGACTTTACAAGAATTTGTGAGAAGAAAG
195 TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* * * * ** *
178184 CATTTCTTGCGAAACCAAAGCACCAATATCGTTTAT-CTGTATAAGAAGACTATCTTTATGGCGC
260 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT-TATGAGAAGACTATGATTATGGTGC
* * * * * * * * *
178248 CAAATCATGAATATAACGGGGATTGGTATGACTATTCATGTTTGTCTTATTTGAGAGATAAATTT
324 CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * *
178313 TGATTCTATAAAAAATGGTAGATA-GAAAAGCTTTTCCTGTGACACCAAAGCATCAATCTCTTGT
389 TGATTCTATCAAAAATGGTGGA-AGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGT
* * *
178377 ATCCTAAAGAATGGAATGTGTTC
453 ATCCTAATG-AGGGAATGTGTTT
* * * * *
178400 TTGGTTCCCAATCCTGAAAAGAATAGAGACTGCT-ATGAGAATCGATGCTTGTCATCTTTAAGGG
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTG-TAATGAGAATC-ATGCTTGTCTTATTTAAGGG
* * * * *
178464 ATGAATTTTG-TATTTATGGAAAATAGGGCAAAGAATAA-ATTTCCAAGCAAAAGAAAATTATCG
64 ATGAATTTTGAT-TTTAAGGAAAATAGGGCAAAGAA-AAGATTTTCATGCAAAAGAAAATCATCA
* * *
178527 ATATCATTTAT-CTAAATAAGGAGAATGTCTTTATAGTGCCGAATCACAAAATGAAT-ATAGATC
127 ATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATC
* * * * * * *
178590 ATTATTGGAATGCATGTTTGTCTCATTTCAGGCACGAACTTAGGCTTTGCAAAAATTGGTGGGAA
190 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * ** * ** *
178655 GAAAGACTTTCTTACGAAACCAAAGTGTCAATATTAG-GTATGTTTATGAGAAGACTATGTTTAT
255 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TCGTGTATCCTTATGAGAAGACTATGATTAT
* * * * *
178719 GATGCCTAATCCTAAAAAGAATGGTGATTAGCATGACTATTCATGTTTGTCTTATTTGAGAGACA
319 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
178784 AACTTTGATTCTATCAAAAATGGTGGGCA-GAAAAGCTTTTCTTGGGACACCAAAGTATCAATTT
384 AACTTTGATTCTATCAAAAATGGT-GGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
* * *
178848 CATTTTTCCTAATGATGGGAATGTGTTC
448 CATGTATCCTAATGA-GGGAATGTGTTT
* * * * * *
178876 TTGGTACCTAATCTTGAAAAGAATGG-GGACTATTATGAGAATTGATGCTTGTCATATTTAAGGG
1 TTGGTTCCCAATCTTGAAAAGAATGGAGG-CTGTAATGAGAA-TCATGCTTGTCTTATTTAAGGG
* * *
178940 ATGAATTTTGATTTTAAGGAAAATAAGGCATAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
64 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * *
179005 ATCATTTATCCTAATGAAGAGAATGCGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTA
129 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * * *
179070 CTAGAATCCATGTTTATATCATTTCAGGCATGAACTTAGACTTCACAAAAATTGGAGGGAAAAAA
194 CTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * *
179135 GCCTTTCTCGCAAAACCAAAGCATCAATGTCATGTATTCTTATGAGAAGACTATGATTATGGTGC
259 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGC
* *
179200 CTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCATATTTAAGAGACAAACTT
324 CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * * *
179265 TGATTCCATCAAAAATGATGGAAGGAAAAGCTTTTCTTGTAACACCAAAGCATCAATGTCTTCTG
389 TGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
* * * * *
179330 TCCTAAAGAAGCGAATATATTC
454 TCCTAATG-AGGGAATGTGTTT
* * * *
179352 TTGGTTCCCAATCTTGAAAAGAATGG-GTACTGTTATGAGAATCGATGCTTGTCATATTTAAGTG
1 TTGGTTCCCAATCTTGAAAAGAATGGAG-GCTGTAATGAGAATC-ATGCTTGTCTTATTTAAGGG
* * * * * *
179416 ATTAATTTTGATTTTAAGGAAAATAAGGTAAATAAAAGATTTCCATGCAAAAGAAAATTATCAAT
64 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * * ** * *
179481 ATCATTTGTACTAATGAGGAGAATATGTTTATAGTGTTTAATCACAATATGAATAAAGATCATTA
129 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
*
179546 CTAGAATCCATGTTTGTCTTATTTCAAGG-ATGAACTTAGACTTTACAAAAATTGGTGGGAA-AA
194 CTAGAATCCATGTTTGTCTCATTT-AAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * * ** * *
179609 AGCCTTTCTTGCAAAACCTAAGCATCAATGTCGCATATCCTTATGAGAAAACTATGACTATGGTG
258 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTG
* * *
179674 CCTAA-CACTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTATTATTTAAGAGATAAAC
323 CCTAATC-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* *** * * * *
179738 TTTGATTCTATAAAAAACAATGAAAGGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCTTG
387 TTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* *
179803 TGTGCTAATAGAGGGAATGTGTTT
452 TATCCTAAT-GAGGGAATGTGTTT
* *
179827 TTGTTTCCCAATCTTGAAAAGAATGAAGGCTGTAATGAGAATCATTGCTTGTCTTATTTAAGGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATCA-TGCTTGTCTTATTTAAGGGA
* * * *
179892 TGAATTTTGATTTTAAAGAAAATAGGGCGAAGAAAAGATTTTCAAG-GAAA-AAAATCATCAATA
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* * * * *
179955 TTATTTATCCTAACGAGGAGGATGTGTTTATAGTGCTTAATCACAAAATGAATGAGGAT-ATTAC
130 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
180019 CAAAATCCATGTTTTTCTCATTTGAGGCACGAACTTAG-----AC-----TTGGTGGG-A-AAAG
195 TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* *
180072 CCTTTCTTGCGAAACCAAAGCATCAATATCGTTTA-CCTTTATGAGAGGACTATG-TTAATGGTG
260 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC-TTATGAGAAGACTATGATT-ATGGTG
* ** * * *
180135 CCAAATCAGGAATAAG-ATGGGGATTACTATGATTATTCATGTTTGTCTTATTTAAGGGACAAAC
323 CCTAATCCTGAA-AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * * *
180199 TTTGACTCTATCAAAAACGATGGACA-GAAAAGCTTCTCTTATGACACCAAAGCATCAATGTCTT
387 TTTGATTCTATCAAAAATGGTGGA-AGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAT
* * *
180263 GTATCCTAAAGAAGAGAATGTGTTC
451 GTATCCTAATG-AGGGAATGTGTTT
* * * ** * * * *
180288 TTGGTTCCTATTCTTCAAAAGAATATAGACTGCT-ATGAGAATTGATGCTTGTCATACTTAAGGG
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTG-TAATGAGAA-TCATGCTTGTCTTATTTAAGGG
* * * *
180352 TTGAATTTTG-TTTGTAAGGAAAATAGGGCAAAGAATAGATTTCCAAGCAAAAGAAAATCATCAA
64 ATGAATTTTGATTT-TAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAA
* *
180416 TATCATTTATCCTAATGAGAAGAATGTGTTTATAGCGCCTAATCACAAAATGAAT-ATAGATCAT
128 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCAT
* * *
180480 TACT-GAAATCCATGTTTGTCTTATTTCAA-GCATGAACTTAGATTTTACAAAAATTGGTAGGAA
192 TACTAG-AATCCATGTTTGTCTCATTT-AAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
*** * * * * * *
180543 GGATCCCCTTT-TTGCGAAACCAATGCATCAATATCATGTATGCTTACGAGAAGACTTTGTTTAT
255 -GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTAT
* * * * * * *
180607 GGTGCCTAATCCTGGAAAGAATGGTGACTAGCATGACTATTTATGTTTGTATTATTTAAGAGGCA
319 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* ** *
180672 AACTTT-ATTATTATCAAAAACAGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATTAATGT
384 AACTTTGATT-CTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
* * *
180736 CTTGTGTCCTAAAGAAGGGAATGTGTTT
448 CATGTATCCTAATG-AGGGAATGTGTTT
* ** * **
180764 TTGGTTCCCAATCTTGAAAAGAGTGGACACTGTTATGAGAATCGATGCTTGTCATT-TTTAAAAG
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATC-ATGCTTGTC-TTATTTAAGGG
* * *
180828 ATGAATTTTGATTTGAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAAT
64 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * *
180893 ATCTTTTATTCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTA
129 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * *
180958 CTAGAGTCTATGTTTG--TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
194 CTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * *
181021 GTCTTTCTTACGAAACCAAAGCATCAATATCGTGTCTCCTTATGAGTAGACTATGATTGTGGTGC
259 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGC
* * * * * * * *
181086 CCAA-CACT-AAAAGGATTGGGGATTAGTAAGACTATTAATATTTGACTTATTTAGGAGAAAAAC
324 CTAATC-CTGAAAA-GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* ** * * **
181149 TTTAATTCTATCAAAAATGGTATAAGGAAAAGCTTTTTTTTTTTGTGACACCAAAGCCTCAACAT
387 TTTGATTCTATCAAAAATGGTGGAAGGAAAAGC----TTTTCTTGTGACACCAAAGCATCAATGT
* * * * *
181214 CAAGCATGCTAATGGAGGGACTATG-TT
448 CATGTATCCTAAT-GAGGGAATGTGTTT
* * * * * *
181241 TTGGTTCCCAATCTTAAAAAGAATGGAGGCTATAACGAGACTTGATGCTTGTCTTATTTAAAGGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGA-ATCATGCTTGTCTTATTTAAGGGA
** * * * * *
181306 TGAATTTTGATTTTAAGGAAAATAGGGTGAAGAAAAGATTTGCATGCACAAAAAAAAATCCTTAC
65 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG--CAAAAGAAAATCATCAA
* * * **
181371 TATCATTTATCCTAACGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATTAAGATTTTT
128 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* ** *
181436 ACTAGAATCCAGGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGTGAAGAA
193 ACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * ** * *
181501 AGCCTTTCTTGCGAAACCAAAGTATCAATGTCAAGTATCCTTATGAGAAAACTATGACTATGGTG
258 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTG
* *
181566 CCTAA-CACTAAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAAC
323 CCTAATC-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* *** * * * *
181630 TTAGATTCTATCAAAAACAATGGAAGGAAAAGCTTTT-TTGCGACACCAAATCATTAATATCATG
387 TTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * *
181694 TGTCCTAAAGAAAGGAATGTATTCT
452 TATCCTAATG-AGGGAATGTGTT-T
** * * *
181719 TT-GTTCCCAATCTTGAAAAGAATGGACACTGTTATGAGAATCACTGCTTGTCATATTTAAGCGA
1 TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATCA-TGCTTGTCTTATTTAAGGGA
* * * * *
181783 TGAATTTTGGTATTAAGAAAAAT-GTGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCAAT
65 TGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
*
181847 ATCATTTATTCC-AATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
129 ATCATTTA-TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
*
181911 ACTAGATTCCATGTTTGTCTCATTT
193 ACTAGAATCCATGTTTGTCTCATTT
181936 GAGGTGCAAA
Statistics
Matches: 6135, Mismatches: 1037, Indels: 385
0.81 0.14 0.05
Matches are distributed among these distances:
460 7 0.00
461 263 0.04
462 20 0.00
463 63 0.01
464 34 0.01
465 1 0.00
467 2 0.00
469 2 0.00
471 9 0.00
472 122 0.02
473 90 0.01
474 441 0.07
475 1594 0.26
476 1711 0.28
477 865 0.14
478 152 0.02
479 202 0.03
480 2 0.00
481 173 0.03
482 4 0.00
483 1 0.00
491 1 0.00
494 1 0.00
495 117 0.02
497 3 0.00
498 79 0.01
499 40 0.01
500 27 0.00
501 43 0.01
502 65 0.01
503 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
TTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTAATGAGAATCATGCTTGTCTTATTTAAGGGAT
GAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
AGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCT
AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
ATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
CTAATGAGGGAATGTGTTT
Found at i:177049 original size:159 final size:156
Alignment explanation
Indices: 176406--177057 Score: 352
Period size: 159 Copynumber: 4.1 Consensus size: 156
176396 TCTAGAGACA
* * * *
176406 AACTTTGATTCCATAAAAAA-TGGTGGAAAG-AAACCTCTTCTTGCTGCACCAAAACATTAATGT
1 AACTTTGATT-CTTAAAAAATTGGTGGAAAGAAAACCTCTTCTTGCT-TACCAAAACATCAATAT
* * *
176469 CATATATCCTAATGAAGAGACTATGTTCT-TGGTTCCCAATCTTGAAAAAG-ATGGGGTCTGTTT
64 CATATATCCTAAT-AAGAGACTATGTT-TATGGTGCCCAAT-TTGAAAAAGAATAGGAT-TGTTT
*
176532 CGAGAATCGATGCTTGTCTTATTTATCTGATG
125 CGAGAATTGATGCTTGTCTTATTTATCTGATG
* * ** * ** * ** * *
176564 AGCTTTGATT-TTAAGGAAAATTGG-GCAAAGAAAAGATTTTCACGCTAAAAAAAATCATTAGTA
1 AACTTTGATTCTTAA--AAAATTGGTGGAAAGAAAACCTCTTCTTGCTTACCAAAA-CATCAATA
* * * * *** * * **
176627 TCA-ATTATCCTAACTAGGAGA-AAGTGTTTATAGTGCCTAATTACCAAATGAATGAAGATAATT
63 TCATA-TATCCTAA-TAAGAGACTA-TGTTTATGGTGCCCAATTTGAAAAAGAAT-AGGATTGTT
* * ** * * **
176690 ACTAG-ATTCCTTGTTTGTCTCATTTA-AGGCATG
124 TCGAGAATT-GATGCTTGTCTTATTTATCTG-ATG
* * * * * ** *
176723 AACTTAGACT-TTACAAAAATTAGTGGGAAGAAAGCCT-TTCTTGGAATACCAAAGCATCAATAT
1 AACTTTGATTCTTA-AAAAATTGGTGGAAAGAAAACCTCTTCTT-GCTTACCAAAACATCAATAT
* * *
176786 CATCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATTCTG-AAAAGAATAGGGATTAGTAT
64 CATATATCCTAATAAG-AGACTATGTTTATGGTGCCCAATT-TGAAAAAGAATA-GGATT-GTTT
* * * * ** **
176850 -GACAATTTATGTTTGTCATATTT-TAGAGACA
125 CGAGAATTGATGCTTGTCTTATTTAT-CTGATG
** *
176881 AACAATGATTCCTTAAAAAA-TGGTGGAAAGAAAACCTCTTCTTGCCTTACCAAAACATCAATGT
1 AACTTTGATT-CTTAAAAAATTGGTGGAAAGAAAACCTCTTCTTG-CTTACCAAAACATCAATAT
*
176945 CATATATCCTAATGAAGAGACTATGTTCT-TGGTTCCCAATCTTGAAAAAG-ATAGGATCTGTTT
64 CATATATCCTAAT-AAGAGACTATGTT-TATGGTGCCCAAT-TTGAAAAAGAATAGGAT-TGTTT
*
177008 CGAGAATTGATGCTCGTCTTATTTATCTGATG
125 CGAGAATTGATGCTTGTCTTATTTATCTGATG
177040 AACTTTGATT-TTAAAAAA
1 AACTTTGATTCTTAAAAAA
177058 AAATTGGGCA
Statistics
Matches: 355, Mismatches: 103, Indels: 73
0.67 0.19 0.14
Matches are distributed among these distances:
156 3 0.01
157 12 0.03
158 133 0.37
159 189 0.53
160 18 0.05
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (156 bp):
AACTTTGATTCTTAAAAAATTGGTGGAAAGAAAACCTCTTCTTGCTTACCAAAACATCAATATCA
TATATCCTAATAAGAGACTATGTTTATGGTGCCCAATTTGAAAAAGAATAGGATTGTTTCGAGAA
TTGATGCTTGTCTTATTTATCTGATG
Found at i:179029 original size:159 final size:157
Alignment explanation
Indices: 178835--179510 Score: 388
Period size: 159 Copynumber: 4.3 Consensus size: 157
178825 TTGGGACACC
* * * * * * *
178835 AAAGTATCAATTTCATTTTTCCTAATGATGGGAATGTGTTCTTGGTACCTAATCTTGAAAAGAAT
1 AAAGCATCAATATCATTTATCCTAATGAAGAGAATATGTT-TTGGTGCCTAATCTTGAAAAGAAT
** * *
178900 GGGGACTATTATGAGAATTGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-
65 GGGGACTATTATGAGAATCCATGCTTGTCATATTTAAGGGATGAACTTTGATTTCAAGGAAAATG
*
178964 AAGGCATAGAAAAGATTTCCATGCAAAAGA
130 AAGG-A-AGAAAAGATTTCCATGCAAAACA
* ** ** **
178994 AAATCATCAATATCATTTATCCTAATGAAGAGAATGCGTTTATAATGCCTAATC-ACAAAATGAA
1 AAAGCATCAATATCATTTATCCTAATGAAGAGAATATGTTT-TGGTGCCTAATCTTGAAAA-GAA
** * * * * * *
179058 TGAAGA-TCATTACT-AGAATCCATGTTTAT-ATCATTTCAGGCATGAACTTAGACTTCACA--A
64 TGGGGACT-ATTA-TGAGAATCCATGCTTGTCAT-ATTTAAGGGATGAACTTTGATTTCA-AGGA
* * *
179118 AAATTGGAGGGAA-AAAAGCCTTT-C-TCGCAAAACC
125 AAA-T-GAAGGAAGAAAAG-ATTTCCAT-GCAAAACA
* * * * * *
179152 AAAGCATCAATGTCATGTATTCTTATG-AGAAGACTATGATTATGGTGCCTAATCTTGAAAAGAA
1 AAAGCATCAATATCATTTATCCTAATGAAG-AGAATATG-TTTTGGTGCCTAATCTTGAAAAGAA
* * ** * * * ** * ***
179216 TGGGGATTAGTATGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCCATCAAAAAT
64 TGGGGACTATTATGAGAATCCATGCTTGTCATATTTAAGGGATGAACTTTGATTTCAAGGAAAAT
* * * * * * *
179281 GATGGAAGGAAAAGCTTTTCTTGTAACACC
129 GAAGGAA-GAAAAGATTTCCATGCAAAACA
* * * * * * *
179311 AAAGCATCAATGTC-TTCTGTCCTAAAGAAGCGAATATATTCTTGGTTCCCAATCTTGAAAAGAA
1 AAAGCATCAATATCATT-TATCCTAATGAAGAGAATATGTT-TTGGTGCCTAATCTTGAAAAGAA
* * * * * * *
179375 TGGGTACTGTTATGAGAATCGATGCTTGTCATATTTAAGTGATTAATTTTGATTTTAAGGAAAAT
64 TGGGGACTATTATGAGAATCCATGCTTGTCATATTTAAGGGATGAACTTTGATTTCAAGGAAAAT
* *
179440 -AAGGTAAATAAAAGATTTCCATGCAAAAGA
129 GAAGG--AAGAAAAGATTTCCATGCAAAACA
** * * *
179470 AAATTATCAATATCATTTGTACTAATGAGGAGAATATGTTT
1 AAAGCATCAATATCATTTATCCTAATGAAGAGAATATGTTT
179511 ATAGTGTTTA
Statistics
Matches: 382, Mismatches: 106, Indels: 59
0.70 0.19 0.11
Matches are distributed among these distances:
157 10 0.03
158 111 0.29
159 248 0.65
160 10 0.03
161 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (157 bp):
AAAGCATCAATATCATTTATCCTAATGAAGAGAATATGTTTTGGTGCCTAATCTTGAAAAGAATG
GGGACTATTATGAGAATCCATGCTTGTCATATTTAAGGGATGAACTTTGATTTCAAGGAAAATGA
AGGAAGAAAAGATTTCCATGCAAAACA
Found at i:182328 original size:438 final size:438
Alignment explanation
Indices: 181513--182377 Score: 1137
Period size: 438 Copynumber: 2.0 Consensus size: 438
181503 CCTTTCTTGC
* *
181513 GAAACCAAAGTATCAATGTCAAGTATCCTTATGAGAAAACTATGACTATGGTGCCTAACACTAAA
1 GAAACCAAAGCATCAATATCAAGTATCCTTATGAGAAAACTATGACTATGGTGCCTAACACTAAA
* * * *
181578 AAGAATGGGGATTAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTAGATTCTATCA
66 AAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTAATTAAGACACAAACTTAGATTCTATCA
* * * *
181643 AAAACAATGGAAGGAAAAGCTTTTTTGCGACACCAAATCATTAATATCATGTGTCCTAAAGAAAG
131 AAAACAATGGAAGGAAAAGCTTTTTTGCAACACCAAAGCATCAATATCATGTATCCTAAAGAAAG
* ** *
181708 GAATGTATTCTTTGTTCCCAATCTTGAAAAGAATGGACACTGTTATGAGAATCACTGCTTGTCAT
196 GAATGTATTCTTTGTTCCCAATCTTGAAAAGAATGGACACTGATAACAGAATCAATGCTTGTCAT
** *
181773 ATTTAAGCGATGAATTTTGGTATTAAGAAAAATGTGGCAAAGAAAAGATTTCCATGCAAAAGAAA
261 ATTTAAGCGATGAATTTTCATATTAAGAAAAATGGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * *
181838 ATAATCAATATCATTTATTCCAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
326 ATAATCAATATCATTTATCCCAACGAGGAAAATGTGTTCAGACTGCCTAATCAAAAAATGAATGA
*
181903 AGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGTGCAAACTTAT
391 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCAAACTTAT
* * *** *
181951 GAAACCAAAGCATTAATATCGAGTATCCTTATGAGAAGTTTATGACTATGGTGCCTAACACTGAA
1 GAAACCAAAGCATCAATATCAAGTATCCTTATGAGAAAACTATGACTATGGTGCCTAACACTAAA
* * *
182016 AAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTAATTAAGACACAAACTTTGTTTCTGTCA
66 AAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTAATTAAGACACAAACTTAGATTCTATCA
* * ** * * * *
182081 AAAATAGTGGTGGGAAAAGCTTTTTTTGCAACACCAAAGCATCAGA-GTCTTGTATGCTAGTAG-
131 AAAACAATGGAAGGAAAAGC-TTTTTTGCAACACCAAAGCATCA-ATATCATGTATCCTA-AAGA
* * **
182144 AGGGAATGTGTT-TTTGGTTCCCAATCTTGAAAAGAATGGAGGCT-ATAACATGAATCAATGCTT
193 AAGGAATGTATTCTTT-GTTCCCAATCTTGAAAAGAATGGACACTGATAACA-GAATCAATGCTT
* * * * * * * *
182207 GTCTTATTTAGGGGATGAATTTTCATTTTAAGGAAAATGGGGCGAAGAAAAGATTTTCGTGCAAA
256 GTCATATTTAAGCGATGAATTTTCATATTAAGAAAAATGGGGCAAAGAAAAGATTTCCATGCAAA
* * *
182272 A-AAAATCATTAATATCATTTATCCCAACGAGGAGAATGTGTTCAGACTGCCTAATCAAAAAATG
321 AGAAAATAATCAATATCATTTATCCCAACGAGGAAAATGTGTTCAGACTGCCTAATCAAAAAATG
*
182336 AATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGG
386 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
182378 CACGAAATTA
Statistics
Matches: 365, Mismatches: 57, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
438 231 0.63
439 131 0.36
440 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (438 bp):
GAAACCAAAGCATCAATATCAAGTATCCTTATGAGAAAACTATGACTATGGTGCCTAACACTAAA
AAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTAATTAAGACACAAACTTAGATTCTATCA
AAAACAATGGAAGGAAAAGCTTTTTTGCAACACCAAAGCATCAATATCATGTATCCTAAAGAAAG
GAATGTATTCTTTGTTCCCAATCTTGAAAAGAATGGACACTGATAACAGAATCAATGCTTGTCAT
ATTTAAGCGATGAATTTTCATATTAAGAAAAATGGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATAATCAATATCATTTATCCCAACGAGGAAAATGTGTTCAGACTGCCTAATCAAAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCAAACTTAT
Found at i:184099 original size:476 final size:475
Alignment explanation
Indices: 181951--196579 Score: 15510
Period size: 475 Copynumber: 30.7 Consensus size: 475
181941 GCAAACTTAT
* * ** **
181951 GAAACCAAAGCATTAATATCGAGTATCCTTATGAGAAGTTTATGACTATGGTGCCTAA-CACTGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGA
* * * *
182015 AAAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTAATTAAGACACAAACTTTG-TTTCTGT
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT-TAT
** ** ** * *
182079 CAAAAATAGTGGTGGGAAAAGCTTTTTTTGCAACACCAAAGCATCAGA-GTCTTGTATGCTAGTA
129 CAAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCA-ATGTCTTGTATCCTA-AA
* * * * *
182143 G-AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATAAC-ATGAATCAATGCT
192 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGCT
* * * ** * * *
182206 TGTCTTATTTAGGGGATGAATTTTCATTTTAAGGAAAATGGGGCGAAGAAAAGATTTTCGTGCAA
256 TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * * * * * *
182271 AA-AAAATCATTAATATCATTTATCCCAACGAGGAGAATGTGTTCAGACTGCCTAATCAAAAAAT
321 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * *
182335 GAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAAATTATACCTTACAAGA
386 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAA
* *
182400 ATTGGTGGGAAAAAAGCCTTCCTTGC
450 ATTGGTGGGAAGAAAGCCTTTCTTGC
* * * *
182426 GAAAACAAAGCGTCAATATCATGTAT-CTTAATGGGAAGACTATGTTTATGGTGCCTAATCCTGA
1 GAAACCAAAGCATCAATATCGTGTATCCTT-ATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * **
182490 ATAGAATGGGAATTAGTATGACTATTCATGTTTATCTTATTTAA-AGGATAAACTTTGATTCCAT
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTTTAT
* * * * *
182554 CACAAACGGTGGACA-AAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTTTTGTATCCTAAAG
129 CAAAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAG
* * *
182618 AAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGATGCTTG
193 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * ** * * * * **
182683 TCATCTTTAAGGGATGAATTTTGGTTTTAAGGAAAATTCGGCAAAGAATATACTTCCATACAAGT
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
*
182748 GAAAATCATC-A-CT-ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
323 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
182810 AT-ATAGATCATTATTGGAATTCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTGCAAAAA
388 ATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAA
* *
182874 TTGGAGGGAAGAAAGACTTTCTTGC
451 TTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
182899 GAAATCAAAGCGTCAATATTG-GACATGCTTATAAGAAGACTATGTTTTTGGTGCCTAATCCTAA
1 GAAACCAAAGCATCAATATCGTG-TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * *
182963 AAAGAATGGCGATTAGCATGACCATTCATGTTTATCTTATTTGAA-AGACAAACTTTGATTCTAT
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTTTAT
* *
183027 CAAAAACGGTGGATA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATT-TATCCTAAT
129 CAAAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTC-TTGTATCCTAAA
* * *
183090 GAAGGGAATGTGTTCTTGGTACCTAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
192 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * *
183155 GTCATATTTATGGGATAAATTTTGATTTTAAGGAAAATAAGGCATAGAAACGATTTCCATGCAAA
257 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
183220 AAAAAATCATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATAATGCCTAATCCCAAAATG
322 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * **
183285 AATGAAGA-C-TT-GTGAGAAAATCCATGTTTGTATCATTTTAGGCATGAACTTAGACTTCCCAA
387 AATGAAGATCATTACT-AG--AATCCATGTTTGTCTCA-TTTAGGCATGAACTTAGACTTTACAA
* *
183347 AAATTGGTGGGAAAAAAGCTTTTTTCTTGC
448 AAATTGGTGGGAAGAAAGC--CTTTCTTGC
* * * * * *
183377 AAAACAAAAGCATCAATGTCGTGTATCCTTGTGAGAAGACTATGATTGTGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* *
183442 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * *
183507 AAAATGGTGGAAGGAAAAGCTTTTATTGTGACACCAAAGCATCAATGTCTTGTGTCCTAAAGAAG
131 AAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
* * * * * * *
183572 CGAATGTGTTCTTGGTTCTCAATTTTTAAAAGAATAGG-CACCGTTATGAGAATCGATGCTTGTC
196 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGTC
* * *
183636 ATATTTAAAGGATGAATTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGA
260 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * **
183701 AAATCATTAATATCTTTTATTCTAATGAAGAGAATGTGTTTATAGTGTCTACGCACAAAATGAAT
325 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
183766 AAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAAAG-ATGAACTTAGACTTTACAAAAATT
390 GAAGATCATTACTAGAATCCATGTTTGTCTCATTT--AGGCATGAACTTAGACTTTACAAAAATT
* *
183830 AGAGGGAAGAAAGCCTTTCTTGC
453 GGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * ** *
183853 GGAACCAAAGCGTCAGTGTCGGGTATCCTTATGCGAAAACTATGACTATGGTGCCTAA-CACTAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGA
183917 ACAAG-ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
65 A-AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* ** * * * * * *
183981 CAAAGATAGTGGAATGAAAAGCTTTTTTTGCGAGACCAAAGCATCAATGTCATGTGTGCTAATAG
129 CAAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAA-AG
* * * * * * *
184046 -AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGGCTGTAATGAGAATCGTTGCTTA
193 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * **
184110 TCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGAAACA-ATTTTCGGGCAAA
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAA-AGATTTCCATGCAAA
* * * *
184174 A-AAAATCATCAGTATCATTTATCCTAACGAGGAGAATGTGTTCATAGTGCCTAATCGCAAAATG
322 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
184238 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACCTAGACTTTACAAGAA
387 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAA
*
184303 TTGGTGGGAAGAAAGCCTTTGTTGC
451 TTGGTGGGAAGAAAGCCTTTCTTGC
* * * *
184328 GAAACCAAAGCATCAATATCATTTA-CCTTTATGAGAAGACTATGTTTATGGTGCCAAATCATGA
1 GAAACCAAAGCATCAATATCGTGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * *
184392 ATACAACCGGGG-TTAGTATGGCTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT
65 AAAGAA-TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * * * * * *
184456 CAAAACCGATGGACA-GAAAAGCTTTTCTTGTGACACCAAAGCACCCATCTCTTCTATCCTAAAG
129 CAAAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAG
* * * * * * * *
184520 AAGAGAATGTGTTTTTGATTCCTAATCTTGAAAAGAATAGAGACTGCTATGAGAATCTATGCTTG
193 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * *
184585 TCATATTTAGGGGATTAAATTTTGATTTTAAGGAAAATAGGGCAGAGAATAGATTTCCATGCAAA
258 TCATATTTAAGGGA-TGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
184650 AGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCACAAAAAG
322 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * *
184715 AAT-ATAGATCATTACT-GAAATCCATGTTTGTCTTATTACAAGCATGAACTTAGGA-TTTACAA
387 AATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATT-TAGGCATGAACTTA-GACTTTACAA
184777 AAATTGGTGGGAAGAAAGCCTTTCTTGC
448 AAATTGGTGGGAAGAAAGCCTTTCTTGC
* * **
184805 GAAACCAAAGCATCAATATCCTATATGTTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * *
184870 AAGAATGGTGATTTGCATGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC-
* * * *
184935 AAAAACAGCT-GAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTGTCCTAAAAA
130 AAAAAC-GGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
** ** * *
184999 AACGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GCCACTGTTGCGAGAATCAATGCTTGT
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * * * *
185063 CATTTTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAAAC
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
185128 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAATGCCTAACCACAAAATGAA
324 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * **
185193 T-ATA-ATCATTACT-GAAATGCATGTTTGTCTCAATTCAGGCACAAACTTAGACTTTACAAAAA
389 TGA-AGATCATTACTAG-AATCCATGTTTGTCTC-ATTTAGGCATGAACTTAGACTTTACAAAAA
* *
185255 TTTGTGTGAAGAAAGCCTTTCTTGC
451 TTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
185280 GAATCCAAAGCATCCATATCGTGTATGCTTATGAGAAGACTATTTTTATGGTGCTTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
185345 AAGAATGGTGATTAGCATGACTATTCATGTTTGTCTTATTTACGAGACAAACTTTGATTTTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * * *
185410 AAAACAGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTGTCCTAAAAAAG
131 AAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
* * * *
185475 CGAATGTGTTGTTGGTTCCTAATCTTGAAAAGAATGG-GCACTGTTACGAGAATAGATGCTTGTC
196 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG-ACTGTTACGAGAATCGATGCTTGTC
* * *
185539 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGACGAAGAATAGATTTCCAAGCAAAAG
260 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAAAG
* * *
185603 AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGTCTACTCACAAAATGAA
324 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
185668 TGAAGGTCATTACTAGAATCCATGTTTGTCTAATTTCAGGCACGAACTTAGACTTTACAAAAATT
389 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAATT
* *
185733 GGTGGGATGAAAGCCTTCCTTGC
453 GGTGGGAAGAAAGCCTTTCTTGC
* * * * ** *
185756 AAAACCAAAGCATCAATGTCGAGTATCCTTATGAGAAAACTATGACTATGGTGCTTAA-CACT-A
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGA
* * * * * *
185819 TAAA-TATGGGGATTCGTATGGCTATTCATGTTTGTTTTATTTAAAAGACAAACTTAGATTTTAT
65 -AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * * ** * * ** * * *
185883 CAAAGACAGTGGATGGAAAAGCTTTTTTCTACGATACCAAAGCATCAATGCCAGGCATGCTAATG
129 CAAAAACGGTGGAAGGAAAAGCTTTTTT-TGTGACACCAAAGCATCAATGTCTTGTATCCTAAAG
* * * * *
185948 GAGGAAATGTGGTT-TTGGTTCCCAATCTTAAAAAGAATGGATG-CTATAACGAGAATCGATGCT
193 AAGGGAATGT-GTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GACTGTTACGAGAATCGATGCT
* * * * * * *
186011 TATCTTACTTAAGGGATGAATTTTGATTCTAAGGAAAATAAGGCGAAGAAAAGATTTTCATTCAA
256 TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC-A
* * * * *
186076 AAAAAAAATCATCAGTATTATTTATCCAAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAA
320 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * *
186141 TGAATGAAGCTCATTACTCGAATCTATGTTTGTCTCCTTTGAGGCATGAACTTAGACTTTACCAA
385 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAA
* * * **
186206 AATTGGTAGGAAGAAAGACTTACTTAA
449 AATTGGTGGGAAGAAAGCCTTTCTTGC
* * * *
186233 GGAACCAAAGCGTCAATATCTTGTATCCTTAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * ** * * * *
186298 AAGATTGGGGATTAGTATGATTGCTCACGTTTGTCTTACTTAAG-GAACAAACTTTGATTCTATG
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATC
** * *
186362 AAAAATAGTGGATA-GAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTATCCT-AA-A
130 AAAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
* * * * *
186424 AGGAGAATGTGCTCTT-GTTCCCAATCTTGTACAGAATGGAGATTGTTACAAGAATCGATGCTTG
194 AGG-GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * * * *
186488 TCATATTTAAAGGATGAATTTTGATTCTAAGTAAAATAAGGCAAATAAAAGATTTTCATGTAAAT
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * *
186553 GAAAATCATCAATATCATTTATTCTAACGAGAAGAAAGTGTTTATGGTGCCTAATCACAAAATAA
323 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * * *
186618 ATGAAGATAATTACTAGAATCCATGTTTCTTTCATTTTCGGCACGAACTAAGACTTTACACAAAT
388 ATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTAGGCATGAACTTAGACTTTACAAAAAT
* * *
186683 TGGTGAGAAGAAAACCTTTCTTGT
452 TGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
186707 GAAACTAAAGCATCATTATCTTGTATCCTTATGAGAAGAATATGATTGTGGTGCCTAGTCCTAAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * ** * * *
186772 AAGAATTGGGATTAGTATAACTATTCACATTTGTCTTGTTTAGGATACAAACTTTGATTTTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * * * * *
186837 AAAACAGTGGAAGTGGAAGGAAAAGCTTTTTTTGTAACACCAAAGCGTTAATGTCATGCATGCTA
131 AAAAC----G--GTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTA
* * * * * * * *
186902 ATGGAGGGAATGTGTTTTTGGTTACCAACCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGC
190 AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * * * *
186967 TTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCCTGCA
255 TTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA
* *** * * * ** *
187032 AAAGAAAACCATTTGTGTCATTTATCCTAATGAGGAAAATGTGTTTA-AGTGCCTACTCGTAAAC
320 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * * *
187096 TGAATGAAGATCATTACTAGAATCTATGTCTGTATCATTTCAAGCGTGAACATAGAGTTTACAAA
385 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAA
* * *
187161 ATTTAGTGAGAAGAAAGCCTTTCTTGC
449 AATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
187188 GAAACCAAAGCATTAATATCATCTATCC-TACTGAGAGGACTATGTTTATGGTGCCTAATCTTGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTA-TGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * ** *
187252 AAAGAATGGGGATTAGTATGACTATTTATGTTTGTCATATTTTAGAGA-AAACTTTGATTCCATA
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * ** *** * * * * *
187316 AAAAATGGTGGAAAGAAAACCTCTTCCTACCG-CACCAAAACATCAATGCCATATATCCTAATGA
130 AAAAACGGTGGAAGGAAAAGCT-TTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
* * * * ** * *
187380 AGGGACTATGTTCTTGGTTCCCAATCTTGAAAAAAATAGG-GTCTGTTTTGAGAATTGATGCTTA
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTG
** *** * * * ** *
187444 TTTTATTTATCTGATGAACTTTGATTTTAAGGAAAAT-TGGACAAAGAAAAGATTTTCACACTAA
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAA
* * * * ** * *
187508 AGAAAATCAACAGTATCATTTACCCTAACT-AGGACAATGTGTTTATAGTGATTAATTACCAAAT
322 AGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * **
187572 GAATGAAGACCATTACTTGATTCCTTGTTTGTCTCATTTAAGGCAAAAACTTAGACTTTACAAAA
386 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAA
* *
187637 ATTAGTGGGAAAAAAGCCTTTCTTG-
450 ATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * * *
187662 GAAAATCAATGCGTAAATGTCGTTTATCCTTGTGAGAAAACTATGATTATGGTGCCTAATCCTGA
1 G-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * *
187727 AAAGAATTGGGATTAGTATGACTATTCATATTTGTTTTGTTTAAGAGACAAACTTTGATTCGT-T
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TTAT
* * ** * *
187791 CAAAAACTGTGGAAGAAAAAGCTTTTTTTGCAACACCAAAGCATCAATGTCATGTA-CGCTAATG
129 CAAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATC-CTAAAG
* * * * * * *
187855 GAGAGAATCTGTTTTTGGAT-CCAATCTTGAAAAGAATGGAGGCTGTAACGAGAATCGATGCTTG
193 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
** * * * *
187919 TTTTATTTAAGGGATGAATTTTGACTATAAGGAAAATAAGGCGAAGAAAAGACTTT-CGTGCAAA
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCCATGCAAA
* *
187983 A-AAAATCATCAATATCATTTATTCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
322 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * *
188047 AATGAAGCTCATTACTAGAATCTACGTCTGTCTCCTTTGAGGCATGAACTTAGACTTTACCAAAA
387 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAA
* * *
188112 TTGGTAGGAAGAAAGACTTTCTTAC
451 TTGGTGGGAAGAAAGCCTTTCTTGC
* ** * * * *
188137 AAAACCAAAGTGTCAATGTCTTGTATCCTTATGAGAAGACTATGTTTATGGTGCTTAATCTTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
** * * * * *
188202 AAGCTTGGGGATTAGTATGACTACTCATGTTTGTCTTACTTAAGGGACAAACTTTTATTTTATGA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
** * *
188267 AAAATAGTGGATA-GAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTATCCT-AA-AA
131 AAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAA
* * * * *
188329 GGAGAATGTGCTCTT-GTTCCCAATCTTGTACAGAATGGAGATTGTTACAAGAATCGATGCTTGT
195 GG-GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * * *
188393 CATATTTAGGGGATGAATTTTGATTCTAAGGAAAATAAGGCAAAAAAAAGATTTCCATGTAAAAG
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
188458 AAAATCGTCAATATCATCTATTCTACTGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAA
324 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
188523 TGATGATCATTACTAGAATCCCTAATTT-TCCCATTTCTTGG-ATGAACTTAGACTTTAAAAAAA
389 TGAAGATCATTACTAGAATCCAT-GTTTGTCTCA-TT-TAGGCATGAACTTAGACTTTACAAAAA
* *
188586 TTGGTGGGAAGAAAGCCTTTCCTAC
451 TTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
188611 GAGACCAAAGCATCAATATCAG-GAATCTTTATGAGAAGACTATGATTATGGTGCCTAATCCTAA
1 GAAACCAAAGCATCAATATC-GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * *
188675 AAATAATGGGGATTGGCATGACTATTTAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * ** * *
188740 AAAAACGGTGGACGAAAAAGCTTTTTTT-TGCAACACCAAAGCATCAATGTCATGCGTGCTAATG
130 AAAAACGGTGGAAGGAAAAGCTTTTTTTGTG--ACACCAAAGCATCAATGTCTTGTATCCTAAAG
* ** * * * * *
188804 GAGGGAATGTG-TCTTTGGTTTTCAA-CTTGAAAAGAATGGAGGCTATAACGAAAATCAATGCTT
193 AAGGGAATGTGTTC-TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * *
188867 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAATAATAGATTTCCATGCAAA
257 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* ** * *
188932 AGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAACGCCTAATTACAAAAAG
322 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
*
188997 AAT-ATAGATCATTACT-GAAATCCATGTTTGTCTCATTTCAAGCATGAACTTAGGA-TTTACAA
387 AATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATTT-AGGCATGAACTTA-GACTTTACAA
* *
189059 GAATTGGTGGGAAAAAAGCCTTTCTTGC
448 AAATTGGTGGGAAGAAAGCCTTTCTTGC
* * *
189087 -AAAGCCAAAGCATCAATATCGTGTATCTTTAT--G-AG---A----TATGGTGCCAAATCATGA
1 GAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * *
189141 ATAGAATGGGGAGTAGTATGACTATTCATGTTTGTCATT-TTTTAGAAACAAACTTTGATTCCAT
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTG-----AT
*
189205 ACAAACTTTGATTCTATAAAAAACAGTGGAAGTGGAAGGAAAAGCTTTTTTTGTAACACCAAAGC
124 ------TTT-A-TC----AAAAAC----G--GTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGC
* * * * * * *
189270 GTCAATGTCATGCATGCTAATAG-AGGGAATGTGTTTTTGGTTACCAACCTTGAAAAGAATGGAG
171 ATCAATGTCTTGTATCCTAA-AGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * * * * **
189334 GCTATAACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATATTAAGGAAAATTGGGC
235 ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGC
** * *** * * *
189399 AAAGAAAATTTTTCCATGCAAAAGAAAACCATTTGTGTCATTTATCCTAATAAGGAAAATGTGTT
300 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* ** * * * * *
189464 TA-AGTGCCTACTCGTAAACTGAATGAAGATCATTACTAGAATCTATGTCTATATCATTTCAGGC
365 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGC
* * * * * *
189528 GTGAACATAGAGTTTACAAAATTTAGTGAGAAGAAAGCCTTTCTTGC
429 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * ** * *
189575 GAAACCAAAGCATTAATATCATCTATCCTCCTGAGAGGACTATGTTTATGGTGCCTAATCTTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * ** *
189640 AAGAATGGGGATTAGTATGACTATTTATGTTTGTCATATTTTAGAGA-AAACTTTGATTCCATAA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * * * ** * * * * * *
189704 AAAATGGTGGAAAGAAAACCTCTTCCTATCG-CACCAAAACATCAATGCCATATATCCTAATGAA
131 AAAACGGTGGAAGGAAAAGCTTTTTTTGT-GACACCAAAGCATCAATGTCTTGTATCCTAAAGAA
* * * * ** * *
189768 GGGACTATGTTCTTGGTTCCCAATCTTGAAAAAAATAGG-GTCTGTTTTGAGAATTGATGCTTAT
195 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGT
** *** * * * ** *
189832 TTTATTTATCTGATGAACTTTGATTTTAAGGAAAAT-TGGACAAAGAAAAGATTTTCACACTAAA
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAAA
* * * * ** * *
189896 GAAAATCAACAGTATCATTTACCCTAACT-AGGACAATGTGTTTATAGTGATTAATTACCAAATG
323 GAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * **
189960 AATGACA-ACCATTACTTGATTCCTTGTTTGTCTCATTTAAGGCAAAAACTTAGACTTTACAAAA
387 AATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAA
*
190024 ATTAGTGGGAAGAAAGCCTTTCTTG-
450 ATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
190049 GAAAATCAATGCGTCAATGTCGTTTATCCTTGTGAGAAAACTATGATTATGGTGCCTAATCCTGA
1 G-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * *
190114 AAAGAATTGGGATTAGTATGACTATTCATATTTGTTTTATTTAAAAGACAAACTTTGATTTGT-T
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT-TAT
* * * **
190178 CGAAAACTGTGGAAGGAAAAGCTTTTTTTTGCGACACCAAAGCATCAATGTCAGGTA-CGCTAAT
129 CAAAAACGGTGGAAGGAAAAGC-TTTTTTTGTGACACCAAAGCATCAATGTCTTGTATC-CTAA-
* * * * * * * * *
190242 AG-AGGGAATCTATTTTTGGATCCCAATCTTGAAAGGAATGGAGGCTGTAATGAAAATCGATGCT
191 AGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
** * *
190306 TGTTTTATTTAA-GGATTGAATTTTGATTATAAGGAAAATAAGGCGAAGAAAAGACTTT-CATGC
256 TGTCATATTTAAGGGA-TGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCCATGC
* * **
190369 AAAA-AAAATCATCAGTATCGTTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAA
319 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * * *
190433 ATGAATGAAGCTCATTACTAGAATCTATGTTTGTATCTTTTGAGGCACGAACTT-GACTTTATAA
384 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAA
*
190497 AAATTGGTGGGAAGAAAGACTTTCTTGC
448 AAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * *
190525 GAAACCAAAGCGTCAAAATCTTTTATCCTTATGAGAAGATTATATTTATGGTGCCTAATCCTAAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * *
190590 AAGATTGGGGATTAGTTTGACTATTCATATTTGTCTTATTTAAGGGACAAACTTTGATTCTATGA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * *
190655 AAAACAGTGGATA-GAAAAGCTTTTCTTGTGACACCAAAACATCAATGTCTTGTATCCTAAATG-
131 AAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAA-GA
* * * * * * *
190718 -GAGAATGTGCTCATGGTTCCAAATCTTGAAAACAATGGAGACTGTTACAAGAATCGATGCTTAT
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * * * *
190782 CATATTTAAGGGACGAGTTTTGATTCTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGTAAAAG
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* ** * * *
190847 AAAATCATCAATATCATTTAT-TTCGCTCAGGAGAATGTGTTTATAGTTCCTAATCACATAATGA
324 AAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
190911 ATGATGATCATTACTAGAATCCATGTTTTTCTCATTTTCGGGATGAACTTAGACTTTAAAAAAAT
388 ATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTAGGCATGAACTTAGACTTTACAAAAAT
190976 TGGTGGGAAGAAAGCCTTTCTTGC
452 TGGTGGGAAGAAAGCCTTTCTTGC
* * * *
191000 GAAACCAAAGCATCAATATCGGGAATCTTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
191065 AAGAATGGGGATTAGCATGACTAATT-ATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC
66 AAGAATGGGGATTAGTATGACT-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * *** * * *
191129 AAAAATGGTGGATGGAAAAGCTTTTTTTGCGATGGCAAAGCATCAATGTCATGTGTGCTAATAG-
130 AAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAA-AGA
* * * * * *
191193 AGGGAATTTGTTTTTGGATCCCAATCTTGAAAGGAATGGACG-CTGTAACGAGAATTGATGCTTG
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GACTGTTACGAGAATCGATGCTTG
** * * **
191257 TTTTATTTAAGGAATGAATTTTGATTATAAGGAAAATAAGGTGAAGAAAAGACTTT-CATGCAAA
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCCATGC-AA
* * * * *
191321 AAAAAAATCATC-ATATCATTTATCCTAACGAGGAGAATGCGTTTATAGTACCTAATCACAAAAA
321 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* ** * * * * * *
191385 GAATGAAGATCAATACTAGAATCTGTCTTTGTTTCATTTGAGGCACGAACATAAACTTTACAAGA
386 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAA
* *
191450 ATTGGTAGGAAGAAAGCCTTTCGTGC
450 ATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * *
191476 GAAACCAAAGCGTCAATATCGTGTATCTTTATGAGACGACCATGTTTATGGTGCCAAATCATGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * *
191541 TAGAATGGGGATTAGTATGACTATTC-TGGTTTGTCTTATTGAAGGGACAAACTTTGATTCTATC
66 AAGAATGGGGATTAGTATGACTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
*** *
191605 AAAAATAATGGACA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
130 AAAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
* ** * * * *
191669 AGAGAATGTGTTCTTTCTTCCTAATCTTGAAAAGAATAGAGGCTGTTACAAGAATCGATGCTTGT
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * * * *
191734 CATATTTCAGGGATGAATTTTGATTTTAAGGAAAACAGGGCAAAGAATAGTTTTCCATGCAAAAG
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
191799 AAAACCATCAATATCATTTATCCTAAT-ACGGAGAATGTGTTTATAGCGCCAAATCACAAGATGA
324 AAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
**
191863 AT-ATAGATCATTACTA-AAGTCCATGTTTGTCTCATTTTAGGCACAAACTTAGACTTTACAAAA
388 ATGA-AGATCATTACTAGAA-TCCATGTTTGTCTCA-TTTAGGCATGAACTTAGACTTTACAAAA
*
191926 ATTGGTTGGAAGAAAGCCTTTCTTGC
450 ATTGGTGGGAAGAAAGCCTTTCTTGC
* * * **
191952 AAAACCAAAGCATCAATATCGTCTATGCTTATGAGAAGACTATGTTTACAGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * ** *
192017 AAGAATGGTGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTAAATTCTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * * * * *
192082 AAAGCGGTGGACA-GAAAAGCTTTTCTTATGGCACCAAAGCATCAATGTCCTT-TTTCCTAATGA
131 AAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGT-CTTGTATCCTAAAGA
**** * * * *
192145 AGGGAATGTGTTCTTAAAACCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTTGT
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * *
192210 CATTTTTTAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCACGC-AAAG
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* ** * * *
192274 AAAATCATCAATATCATTTATCTTAACAAGGAGAATGTGTTTATGGTGCCTAATCAGAAAATAAA
324 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
192339 GGAAGATGATTACTAGAATCCATGATTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATT
389 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAATT
* * * *
192404 GGTGGGAAAAAAGCTTTTTTTTTC
453 GGTGGGAAGAAAGC-CTTTCTTGC
* * * * *
192428 GAAACCAAAGCATCAATATTGTGTATCTTTATGTGAAGACTATGTTTACGGTGCCTAATCTTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * *
192493 TAGAATAGGAATTAGAATGACTATTCATGTTTGTCTCATTTAATAGACAAACTTTGATTTTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * *
192558 AAAAAGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATTAGTGTCTTGTATCCTAAAGAAG
131 AAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
* *
192623 GGAATGTGTTCTTGGTTCCTAATCTTGACAAA-AATGGAGACTGTTACGGGAATCGATGCTTGTC
196 GGAATGTGTTCTTGGTTCCCAATCTTGA-AAAGAATGGAGACTGTTACGAGAATCGATGCTTGTC
** * * *
192687 ATATTTAAGAAATGAATTTTGATTTTAAGGAAAATAAGGCAAA-AAAATATTTCCACGCTAAAGA
260 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
192751 AAATCATCAGTATCATTTATCCTAACT-AGGAGAATATGTTTGTAGTGCCTAATCACAAAATGAA
325 AAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
192815 TGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGGCAAGAACTTAGACTTTAAAAAAATT
389 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAATT
*
192880 GGTAGGG-AGAAAGCCTTTTTTGC
453 GGT-GGGAAGAAAGCCTTTCTTGC
* * * * * * * *
192903 GAAATCAAAGCATCAATATAGTGTATCTTTATGAGAAAACTATGTTTACGGTGCTTAATCTTGGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * *
192968 TAGAATGGGAATTAGTATGACTATTCATGTTTGTCTAATTTAAGAGACAAATTTTGATTTTATAA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * *
193033 AAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACCACAGCATCAATGTCTTATATCCTAAAGAAG
131 AAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
* * * * * * * *
193098 GGAATGCGTTATTGGTTCCTAATCTTAAAAAGAGTAGAGACTGTTACGGGAATCAATGCTTGTCA
196 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCA
* * ** *
193163 TATTTAAGGGATGAATTTTGATTTTAAGGAATATAAGGCAAAGAAAATATTTCCACACTAAAGAA
261 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* ** * *
193228 AATCATCAGTATCATTTATCCTAACAAGGAGAATATGTTTGTAGTGCCTAATCACAAAATGAATG
326 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
193293 AAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAAATTGG
391 AAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAATTGG
*
193358 TAGGG-AGAAAGCCTTTTTTGC
455 T-GGGAAGAAAGCCTTTCTTGC
* * * * * * * * *
193379 GAAATCAAAGCATCAATATTTC-CGTATCTTTTTGTGAAAACTATGTTTACGGTCCCTAATCTTG
1 GAAACCAAAGCATCAATA--TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * *
193443 GATAGAATGGGAATTAGTATGACTATTCATGTTTGTCTAATTTAAGAGACAAACTTTGATTTTAT
64 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* *
193508 C--AAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAAGCATCAATGTCTTGTATCCTAAAGA
129 CAAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
* * * * * * *
193571 AGGGAATGTGTTCTTGGTTCCTAATCTTAAAAAGAATAGAGACTGTTACGGGAATCAACGCTTGG
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * * * ** *
193636 CATATTTAAGGGATGAATTTTGATTTTAAGGAATATAAGGGAAAGAAAAAATTTTCACACTAAAG
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
193701 AAAATCATCAGTATCATTTATCCTAACT-AGGAGAATATGTTTGTAGTGCCTAATCACAAAATGA
324 AAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
193765 ATGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAAAT
388 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAAT
* *
193830 TGATAGGG-AGAAAGCCTTTTTTGC
452 TGGT-GGGAAGAAAGCCTTTCTTGC
* * * * ** * * * *
193854 GAAATCAAAGCATCAATATTGTGTATCTTTTTCTGAAAACTATGTTTACGGTGCCTAATCTTGGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
193919 TAGAATGGGAATTAGTATGACTATTCATGTTTGTCTAATTTAAGAGACAAACTTTGATTTTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
*
193984 AAAACGGTAGAAGGAAAAGCTTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAA
131 AAAACGGTGGAAGGAAAAGC-TTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAA
* * * * *
194049 GGGAATGTGTTCTTGGTTCCTAATCTTAAAAAGAATAGAGATTGTTACGGGAATCGATGCTTGTC
195 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * *
194114 ATATTTAAGGGATGAATTTTGATTTTAAGGAATATAAGGCAAAGAAAATATTTCCACGCTAAAGA
260 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
194179 AAATCATCAGTATCATTTATCCTAACT-AGGAGAATATGTTTGTAGTGCCTAATCACAAAATGAA
325 AAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
194243 TGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAAATT
389 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAATT
* *
194308 GGTGGGGAGAAAGCCTTTTTTGC
453 GGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
194331 GAAATCAAAGCATCAATATTGTGTATCTTTATGTGAAAACTATGTTTACGGTGCCTAATCTTGGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * * *
194396 TAGAATGGGAATTAGTATGACAATTCAGGTTTGTCTAATTTAAGAAACAAACTTTGATTTTATAA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* *
194461 AAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAAGCATCAATGTCTTGTATCCTAAAGAAG
131 AAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
** * *
194526 GGAATGTGTTCTTGGTTCTTAATCTTAAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCA
196 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCA
* ** *
194591 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAATAAAAGATTTCCACACTAAAGAA
261 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
194656 AATCATCAGTATCATTTATCCTAACT-AGGAAAATGTGTTTATAGTGCCTAATCATAAAATGAAT
326 AATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
194720 GAAGATCATTACTAGAATCCATGTTTGCCTCATTTAGGGCATGAACTTAGGCTTTAC-AAAATTG
390 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTA-GGCATGAACTTAGACTTTACAAAAATTG
* *
194784 GTGGGAAAAAAGCCTTTTTTGC
454 GTGGGAAGAAAGCCTTTCTTGC
* * * **
194806 GAAACCAAACCATCAATATCGAGTATCCCTATGAGAAGACTATGACTATGGTGCCTAA-CACTGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGA
* * * * * *
194870 AAAGAATGGGGATTAGTTTGACTATTCTTGTTTTTCTTTTTTAAGCGACAATCTTTGATTTTATC
65 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * * * *
194935 AAAAACGGTGGAAGTAAAAG-TTTTTTTGCGACACCAAAGCATCAATGTCATGTATGCTAACGGA
130 AAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAA
* * * *
194999 GGGAATGTGTTTTTGCTTCCCAATCTTGAAAAGAGTGGAAGA-TGTAACGAGAATCGATGCTTGT
195 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG-AGACTGTTACGAGAATCGATGCTTGT
** * * * * *
195063 TTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGAAAAGATTTTCGTGTAAAA-
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* *
195127 AACAATCATCACTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
324 AA-AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
195192 ATGAAGATCATTACTAGAATCCATATTAGTCTCATTTCAAGCATGAACTTAAATTTTACAAGAAT
388 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAAT
195257 TGGTGGGAAGAAAGCCTTTCTTGC
452 TGGTGGGAAGAAAGCCTTTCTTGC
** ** * * * * *
195281 GAAACCAAAGTGTCAATGCCATGTATCTTTATGAGAAGAGTATGTTTATAGTGCGTAATCCT-AA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * ** * **
195345 ATAAAATGGGGATTCGTATGACTATTAATGTTTGCCTTAAATAA-AGGATAAACTTCAATTTTAT
66 A-AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTTTAT
*** * *
195409 CAAAAAAAATGGACA--AAAAGCTTTTCTTGTGACACCAAAGTATCAATGTCTTGTATCCTAAAG
129 CAAAAACGGTGGA-AGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAG
* * * * * * * *
195472 AAGAGAATGTGTTCTTGATTCCTAAACTTCAAAAGAATAGAGACTGTTATGAGAATCCATGCTTG
193 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * **
195537 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAAGGAAAAGAATGGATTTCCATGCAAAA
258 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * *
195602 GAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCATAAAATGA
323 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
195667 AT-ATGGATCTTTACTAGAATCCATGTCTGTCTTATTTCAAGCATGAACTTAGACTTTATAAAAA
388 ATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAA
* * * *
195731 TTAGTGGGAAGAAAGACTATCTTGT
451 TTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
195756 GAAACCAAAGCATCAATATTGTGTGTGCTTATGAGAAGGCTATGTTTATAGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * *
195821 AAGAATGGTGATTAGCATGACTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
* * * * ** *
195886 AAAACGGTAGGCAA--AAAAACTTTTCTTGTGACCCCAAAGCATCAATGTCATCAATCCTAATGA
131 AAAACGGT-GG-AAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
* * * *
195949 AGGGAATGTGTTCTTGGTACCTAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTAT
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * *
196014 CATATTTAAGGGATGAATTTTGGTTTTAAGGAAAATAAGGTAAAAAAAAGATTTCCATGCAAAAG
259 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* *
196079 AAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCACAAAATGAA
324 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
*
196144 TGAAGATCATTACTAGAATCCATGTTTGTGTCATTTCAGGCATGAACTTAGACTTTACAAAAATT
389 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AGGCATGAACTTAGACTTTACAAAAATT
***
196209 GGCAAGAAGAAAGCCTTTCTTGC
453 GGTGGGAAGAAAGCCTTTCTTGC
* * * * *
196232 AAAACCAAAGCATCAATGTCTTGTATCC---------GACTATGATTATGGTGCCTAATCTTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * **
196288 AATAATGGGGATTATTATGACTGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCC
66 AAGAATGGGGATTA--GT-A-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* * * * * *
196353 ATGAAGAATGGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTATGTCCTAAA
127 ATCAAAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAA
* * * *
196418 GAAGCGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGATACTGTTACGAGAATGGATGCTT
192 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * *
196483 GACGTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGAAAAGAAAAGATTTTCATGCAAA
257 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
*
196548 AG-AAATCATCAATATCATTTATACTAATGAGG
322 AGAAAATCATCAATATCATTTATCCTAATGAGG
196580 TGAAAATCAT
Statistics
Matches: 11955, Mismatches: 1915, Indels: 573
0.83 0.13 0.04
Matches are distributed among these distances:
466 60 0.01
467 38 0.00
469 2 0.00
470 32 0.00
471 210 0.02
472 12 0.00
473 612 0.05
474 1729 0.14
475 3385 0.28
476 3305 0.28
477 1233 0.10
478 553 0.05
479 11 0.00
480 74 0.01
481 181 0.02
482 128 0.01
483 6 0.00
484 1 0.00
485 1 0.00
486 1 0.00
487 3 0.00
488 151 0.01
489 155 0.01
490 2 0.00
491 1 0.00
492 2 0.00
494 1 0.00
497 9 0.00
498 57 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
AAAACGGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCA
TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCTCATTTAGGCATGAACTTAGACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTCTTGC
Found at i:186452 original size:951 final size:948
Alignment explanation
Indices: 181951--196579 Score: 15028
Period size: 951 Copynumber: 15.4 Consensus size: 948
181941 GCAAACTTAT
* * ** *
181951 GAAACCAAAGCATTAATATCGAGTATCCTTATGAGAAGTTTATGACTATGGTGCCTAA-CACTGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-CTGA
* * * *
182015 -AAAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTAATTAAGACACAAACTTTG-TTTCTG
65 TAAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT-TA
* ** * * * *
182078 TCAAAAATAGTGGTGGGAAAAGCTTTTTT-TGCAACACCAAAGCATCAGA-GTCTTGTATGCTAG
128 TCAAAAACAGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCA-ATGTCATGTATCCTAA
* * * * *
182141 TAGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATAAC-ATGAATCAATGC
191 TGGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGA-GAATCGATGC
* * * ** * * *
182205 TTGTCTTATTTAGGGGATGAATTTTCATTTTAAGGAAAATGGGGCGAAGAAAAGATTTTCGTGCA
254 TTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA
* * * * * * *
182270 AAA-AAAATCATTAATATCATTTATCCCAACGAGGAGAATGTGTTCAGACTGCCTAATCAAAAAA
319 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * *
182334 TGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAAATTATACCTTA-CAA
384 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAA
* * * * * *
182398 GAATTGGTGGGAAAAAAGCCTTCCTTGCGAAAACAAAGCGTCAATATCATGTAT-CTTAATGGGA
449 -AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT-ATGAGA
* * *
182462 AGACTATGTTTATGGTGCCTAATCCTGAATAGAATGGGAATTAGTATGACTATTCATGTTTATCT
512 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* * * *
182527 TATTTAA-AGGATAAACTTTGATTCCATCACAAACGGTGGACAAAAAAGCTTTTCTTGTGACACC
577 TATTTAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACC
* * *
182591 AAAGCTTCAATGTTTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAAT
640 AAAGCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* * * * *
182656 AGAGACTGTTATGAGAATCGATGCTTGTCATCTTTAAGGGATGAATTTTGGTTTTAAGGAAAATT
704 -GGGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * * * * ** * *
182721 CGGCAAAGAATATACTTCCATACAAGTGAAAATCATC-A-CT-ATTTATCCTAATGAGGAGAATG
768 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
* * *
182783 TGTTTATAGTGCCTAATCACAAAATGAAT-ATAGATCATTATTGGAATTCATGTTTGTCTCATTT
833 TGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
182847 CAGGCACGAACTTAGACTTTGCAAAAATTGGAGGGAAGAAAGACTTTCTTGC
897 CAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
182899 GAAATCAAAGCGTCAATATTG-GACATGCTTATAAGAAGACTATGTTTTTGGTGCCTAATCCT-A
1 GAAACCAAAGCATCAATATCGTG-TATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGA
* * * * * *
182962 AAAAGAATGGCGATTAGCATGACCATTCATGTTTATCTTATTTGAA-AGACAAACTTTGATTCTA
65 TAAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTTTA
* *
183026 TCAAAAACGGTGGATA-GAAAAGCTTTTCTTGT-GACACCAAAGCATCAATGTCATTTATCCTAA
128 TCAAAAACAGTGGA-AGGAAAAGCTTTT-TTGTGGACACCAAAGCATCAATGTCATGTATCCTAA
* * * *
183089 TGAAGGGAATGTGTTCTTGGTACCTAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
191 TGGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG-CTGTTACGAGAATCGATGCT
* * * *
183154 TGTCATATTTATGGGATAAATTTTGATTTTAAGGAAAATAAGGCATAGAAACGATTTCCATGCAA
255 TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * * * *
183219 AAAAAAATCATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATAATGCCTAATCCCAAAAT
320 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
183284 GAATGAAGA-C-TT-GTGAGAAAATCCATGTTTGTATCATTTTAGGCATGAACTTAGAC-TTCCC
385 GAATGAAGATCATTACT-AG--AATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACC
* * * * * *
183345 AAAAATTGGTGGGAAAAAAGCTTTTTTCTTGCAAAACAAAAGCATCAATGTCGTGTATCCTTGTG
447 -AAAATTGGTGGGAAGAAAGC--CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
* *
183410 AGAAGACTATGATTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
509 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* * *
183475 TCATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTATTGTGACA
574 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGCTTTTCTTGTGACA
* * * * *
183540 CCAAAGCATCAATGTCTTGTGTCCTAAAGAAGCGAATGTGTTCTTGGTTCTCAATTTTTAAAAGA
638 CCAAAGCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
* * * *
183605 ATAGGCACCGTTATGAGAATCGATGCTTGTCATATTTAAAGGATGAATTTTGATTTTAAGGAAAA
702 AT-GGGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * *
183670 TAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCTTTTATTCTAATGAA-GAGA
766 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGA
* ** *
183734 ATGTGTTTATAGTGTCTACGCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCAT
830 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
183799 TTCAAAG-ATGAACTTAGACTTTACAAAAATTAGAGGGAAGAAAGCCTTTCTTGC
895 TTC-AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
183853 GGAACCAAAGCGTCAGTGTCGGGTATCCTTATGCGAAAACTATGACTATGGTGCCTAA-CACT-A
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-CTGA
183916 -AACAAGATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
65 TAA-AA-ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * * * *
183980 TCAAAGATAGTGGAATGAAAAGCTTTTTT-TGCGAGACCAAAGCATCAATGTCATGTGTGCTAAT
128 TCAAAAACAGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * *
184044 AGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGGCTGTAATGAGAATCGTTGCTT
192 GGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGATGCTT
* * * * * **
184109 ATCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCGAAGAAACA-ATTTTCGGGCAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAA-AGATTTCCATGCAA
* * * *
184173 AA-AAAATCATCAGTATCATTTATCCTAACGAGGAGAATGTGTTCATAGTGCCTAATCGCAAAAT
320 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
184237 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACCTAGACTTTA-CAAG
385 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAA-
* * *
184301 AATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCATTTA-CCTTTATGAGAA
449 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC-TTATGAGAA
* * * * * *
184365 GACTATGTTTATGGTGCCAAATCATGAATACAACCGGGG-TTAGTATGGCTATTCATGTTTGTCT
513 GACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGGATTAGTATGACTATTCATGTTTGTCT
* * *
184429 TATTTAAGGGACAAACTTTGATTCTATCAAAACCGATGGACAGAAAAGCTTTTCTTGTGACACCA
577 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACCA
* * * * * * * *
184494 AAGCACCCATCTCTTCTATCCTAAAGAAGAGAATGTGTTTTTGATTCCTAATCTTGAAAAGAATA
641 AAGCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-
* * * * * *
184559 GAGACTGCTATGAGAATCTATGCTTGTCATATTTAGGGGATTAAATTTTGATTTTAAGGAAAATA
704 GGGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGA-TGAATTTTGATTTTAAGGAAAATA
* * *
184624 GGGCAGAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
768 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
* * *
184689 TGTTTATAGTACCTAATCACAAAAAGAAT-ATAGATCATTACT-GAAATCCATGTTTGTCTTATT
833 TGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATT
* * *
184752 ACAAGCATGAACTTAGGA-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
896 TCAGGCACGAACTTA-GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * ** *
184805 GAAACCAAAGCATCAATATCCTATATGTTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA-
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * * *
184869 AAAGAATGGTGATTTGCATGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATC
66 AAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * *
184934 AAAAAACAGCT-GAAGGAAAAGCTTTTCTTGT-GACACCAAAGCATCAATGTCTTGTGTCCTAAA
130 -AAAAACAG-TGGAAGGAAAAGCTTTT-TTGTGGACACCAAAGCATCAATGTCATGTATCCTAAT
** ** * * *
184997 AAAACGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGCCA-CTGTTGCGAGAATCAATGCTT
192 GGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG-GAGCTGTTACGAGAATCGATGCTT
* * * *
185061 GTCATTTTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
185126 ACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAATGCCTAACCACAAAATG
321 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * ** *
185191 AAT-ATA-ATCATTACT-GAAATGCATGTTTGTCTCAATTCAGGCACAAACTTAGACTTTACAAA
386 AATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAA
* * * * *
185253 AATTTGTGTGAAGAAAGCCTTTCTTGCGAATCCAAAGCATCCATATCGTGTATGCTTATGAGAAG
449 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * *
185318 ACTATTTTTATGGTGCTTAATCCTGAAAAGAATGGTGATTAGCATGACTATTCATGTTTGTCTTA
514 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * *
185383 TTTACGAGACAAACTTTGATTTTATCAAAAACAGTGGAAGGAAAAGCTTTTCTTGTGACACCAAA
579 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGCTTTTCTTGTGACACCAAA
* * * * *
185448 GCATCAATGTCTTGTGTCCTAAAAAAGCGAATGTGTTGTTGGTTCCTAATCTTGAAAAGAATGGG
643 GCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGG
*
185513 CACTGTTACGAGAATAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGG
707 -ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG
* * *
185577 ACGAAGAATAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTG
771 -CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTG
* * * *
185642 TTTATAGTGTCTACTCACAAAATGAATGAAGGTCATTACTAGAATCCATGTTTGTCTAATTTCAG
835 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAG
* *
185707 GCACGAACTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTCCTTGC
900 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * *
185756 AAAACCAAAGCATCAATGTCGAGTATCCTTATGAGAAAACTATGACTATGGTGCTTAA-CACT-A
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-CTGA
* * * * * *
185819 TAAATATGGGGATTCGTATGGCTATTCATGTTTGTTTTATTTAAAAGACAAACTTAGATTTTATC
65 TAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * * * * * * *
185884 AAAGACAGTGGATGGAAAAGCTTTTTTCTACGATACCAAAGCATCAATGCCAGGCATGCTAATGG
130 AAAAACAGTGGAAGGAAAAGCTTTTTTGT-GGACACCAAAGCATCAATGTCATGTATCCTAATGG
* * * * *
185949 AGGAAATGTGGTT-TTGGTTCCCAATCTTAAAAAGAATGGATGCTATAACGAGAATCGATGCTTA
194 AGGGAATGT-GTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGATGCTTG
* * * * * *
186013 TCTTACTTAAGGGATGAATTTTGATTCTAAGGAAAATAAGGCGAAGAAAAGATTTTCATTCAAAA
257 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC-AAA
* * * * *
186078 AAAAAATCATCAGTATTATTTATCCAAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATG
321 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * *
186143 AATGAAGCTCATTACTCGAATCTATGTTTGTCTCCTTTGAGGCATGAACTTAGACTTTACCAAAA
386 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAAAA
* * * ** * * * *
186208 TTGGTAGGAAGAAAGACTTACTTAAGGAACCAAAGCGTCAATATCTTGTATCCTTAGGAGAAGAC
451 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC
* * ** * *
186273 TATGTTTATGGTGCCTAATCCTGAAAAGATTGGGGATTAGTATGATTGCTCACGTTTGTCTTACT
516 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* ** *
186338 TAAG-GAACAAACTTTGATTCTATGAAAAATAGTGGATAGAAAAGCTTTTCTTATGACACCAAAG
581 TAAGAG-ACAAACTTTGATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACCAAAG
* * *
186402 CATCAATGTCTTGTATCCTAA-AAGGAGAATGTGCTCTT-GTTCCCAATCTTGTACAGAATGGAG
644 CATCAATGTCTTGTATCCTAAGAAGG-GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG-G
* * * * *
186465 ATTGTTACAAGAATCGATGCTTGTCATATTTAAAGGATGAATTTTGATTCTAAGTAAAATAAGGC
707 ACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGC
* * * * * ** * *
186530 AAATAAAAGATTTTCATGTAAATGAAAATCATCAATATCATTTATTCTAACGAGAAGAAAGTGTT
772 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTT
* * * * *
186595 TATGGTGCCTAATCACAAAATAAATGAAGATAATTACTAGAATCCATGTTTCTTTCATTTTC-GG
837 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTCAGG
* * * * *
186659 CACGAACTAAGACTTTACACAAATTGGTGAGAAGAAAACCTTTCTTGT
901 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * *
186707 GAAACTAAAGCATCATTATCTTGTATCCTTATGAGAAGAATATGATTGTGGTGCCTAGTCCT-AA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * ** * * *
186771 AAAGAATTGGGATTAGTATAACTATTCACATTTGTCTTGTTTAGGATACAAACTTTGATTTTATC
66 AAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * * *
186836 AAAAACAGTGGAAGTGGAAGGAAAAGCTTTTTT-TGTAACACCAAAGCGTTAATGTCATGCATGC
130 AAAAAC------AGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATCC
* * * * *
186900 TAATGGAGGGAATGTGTTTTTGGTTACCAACCTTGAAAAGAATGGAGGCTATAACGAGAATCGAT
188 TAATGGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGAT
* * * * * *
186965 GCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCCTG
252 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
* *** * * * **
187030 CAAAAGAAAACCATTTGTGTCATTTATCCTAATGAGGAAAATGTGTTTA-AGTGCCTACTCGTAA
317 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * * * *
187094 ACTGAATGAAGATCATTACTAGAATCTATGTCTGTATCATTTCAAGCGTGAACATAGAGTTTA-C
382 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACC
* * * * *
187158 AAAATTTAGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCATCTATCC-TACTGA
447 AAAA-TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA-TGA
* * *
187222 GAGGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTTATGTTTGT
510 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * * * * ***
187287 CATATTTTAGAGA-AAACTTTGATTCCATAAAAAATGGTGGAAAGAAAACCTCTTCCTACCG-CA
575 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAGAAAAGCT-TTTCTTGTGACA
* * * * * * *
187350 CCAAAACATCAATGCCATATATCCTAATGAAGGGACTATGTTCTTGGTTCCCAATCTTGAAAAAA
638 CCAAAGCATCAATGTCTTGTATCCTAA-GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
* ** * * ** *** *
187415 ATAGGGTCTGTTTTGAGAATTGATGCTTATTTTATTTATCTGATGAACTTTGATTTTAAGGAAAA
702 AT-GGGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * ** * * * * *
187480 T-TGGACAAAGAAAAGATTTTCACACTAAAGAAAATCAACAGTATCATTTACCCTAACT-AGGAC
766 TAAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TAAGGAG
** * * * * * *
187543 AATGTGTTTATAGTGATTAATTACCAAATGAATGAAGACCATTACTTGATTCCTTGTTTGTCTCA
829 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* ** * *
187608 TTTAAGGCAAAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTG-
894 TTTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
187662 GAAAATCAATGCGTAAATGTCGTTTATCCTTGTGAGAAAACTATGATTATGGTGCCTAATCCTGA
1 G-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGA
* * * * *
187727 -AAAGAATTGGGATTAGTATGACTATTCATATTTGTTTTGTTTAAGAGACAAACTTTGATTCGT-
65 TAAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TTA
* * *
187790 TCAAAAACTGTGGAAGAAAAAGCTTTTTT-TGCAACACCAAAGCATCAATGTCATGTA-CGCTAA
128 TCAAAAACAGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATC-CTAA
* * * * *
187853 TGGAGAGAATCTGTTTTTGGAT-CCAATCTTGAAAAGAATGGAGGCTGTAACGAGAATCGATGCT
191 TGGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGATGCT
** * * * *
187917 TGTTTTATTTAAGGGATGAATTTTGACTATAAGGAAAATAAGGCGAAGAAAAGACTTT-CGTGCA
255 TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCCATGCA
* *
187981 AAA-AAAATCATCAATATCATTTATTCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
319 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * *
188045 TGAATGAAGCTCATTACTAGAATCTACGTCTGTCTCCTTTGAGGCATGAACTTAGACTTTACCAA
384 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAA
* * * * ** * *
188110 AATTGGTAGGAAGAAAGACTTTCTTACAAAACCAAAGTGTCAATGTCTTGTATCCTTATGAGAAG
449 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * ** *
188175 ACTATGTTTATGGTGCTTAATCTTGAAAAGCTTGGGGATTAGTATGACTACTCATGTTTGTCTTA
514 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * * * * ** *
188240 CTTAAGGGACAAACTTTTATTTTATGAAAAATAGTGGATAGAAAAGCTTTTCTTATGACACCAAA
579 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACCAAA
* * *
188305 GCATCAATGTCTTGTATCCTAA-AAGGAGAATGTGCTCTT-GTTCCCAATCTTGTACAGAATGGA
643 GCATCAATGTCTTGTATCCTAAGAAGG-GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG-
* * * *
188368 GATTGTTACAAGAATCGATGCTTGTCATATTTAGGGGATGAATTTTGATTCTAAGGAAAATAAGG
706 GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG
* * * * * * * *
188433 CAAAAAAAAGATTTCCATGTAAAAGAAAATCGTCAATATCATCTATTCTACTGAGGAAAATGTGT
771 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGT
* * * * *
188498 TTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCCCTAATTT-TCCCATTTCTT
836 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT-GTTTGTCTCATTTC-A
* * * *
188562 GG-ATGAACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTCCTAC
899 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * *
188611 GAGACCAAAGCATCAATATCAG-GAATCTTTATGAGAAGACTATGATTATGGTGCCTAATCCT-A
1 GAAACCAAAGCATCAATATC-GTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGA
* * * * * *
188674 AAAATAATGGGGATTGGCATGACTATTTAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
65 TAAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * * * * ** *
188739 CAAAAACGGTGGACGAAAAAGCTTTTTTTTGCAACACCAAAGCATCAATGTCATGCGTGCTAATG
129 CAAAAACAGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATCCTAATG
** * * * *
188804 GAGGGAATGTG-TCTTTGGTTTTCAA-CTTGAAAAGAATGGAGGCTATAACGAAAATCAATGCTT
193 GAGGGAATGTGTTC-TTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGATGCTT
* * *
188867 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAATAATAGATTTCCATGCAAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* ** * *
188932 AGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAACGCCTAATTACAAAAAG
321 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
*
188997 AAT-ATAGATCATTACT-GAAATCCATGTTTGTCTCATTTCAAGCATGAACTTAGGA-TTTA-CA
386 AATGA-AGATCATTACTAG-AATCCATGTTTGTCTCATTTCAGGCATGAACTTA-GACTTTACCA
* *
189058 AGAATTGGTGGGAAAAAAGCCTTTCTTGC-AAAGCCAAAGCATCAATATCGTGTATCTTTAT--G
448 A-AATTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAG
* * * *
189120 -AG---A----TATGGTGCCAAATCATGAATAGAATGGGGAGTAGTATGACTATTCATGTTTGTC
511 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * *
189177 ATTTTTTAGAAACAAACTTTGATTCCATACAAACTTTGATTCTATAAAAAACAGTGGAAGTGGAA
576 -TTATTT-------AA----G-----AGACAAACTTTGATTCTATCAAAAAC----G--GTGGAA
* * * * * * * *
189242 GGAAAAGCTTTTTTTGTAACACCAAAGCGTCAATGTCATGCATGCTAATAGAGGGAATGTGTTTT
618 -GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAGA-AGGGAATGTGTTCT
* * * * * *
189307 TGGTTACCAACCTTGAAAAGAATGGAGGCTATAACGAGAATCGATGCTTGTCTTATTTAAGGGAT
681 TGGTTCCCAATCTTGAAAAGAATGG-GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGAT
* * * ** ** * *** *
189372 AAACTTTGATATTAAGGAAAATTGGGCAAAGAAAATTTTTCCATGCAAAAGAAAACCATTTGTGT
745 GAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * ** *
189437 CATTTATCCTAATAAGGAAAATGTGTTTA-AGTGCCTACTCGTAAACTGAATGAAGATCATTACT
810 CATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * ** * * * * *
189501 AGAATCTATGTCTATATCATTTCAGGCGTGAACATAGAGTTTACAAAATTTAGTGAGAAGAAAGC
875 AGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
189566 CTTTCTTGC
940 CTTTCTTGC
* * * ** * * *
189575 GAAACCAAAGCATTAATATCATCTATCCTCCTGAGAGGACTATGTTTATGGTGCCTAATCTTGA-
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * * ** *
189639 AAAGAATGGGGATTAGTATGACTATTTATGTTTGTCATATTTTAGAGA-AAACTTTGATTCCATA
66 AAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
** * * ** * * * * * *
189703 AAAAATGGTGGAAAGAAAACCTCTTCCTATCG-CACCAAAACATCAATGCCATATATCCTAATGA
130 AAAAACAGTGGAAGGAAAAGCT-TTTTTGTGGACACCAAAGCATCAATGTCATGTATCCTAATGG
* * * ** * *
189767 AGGGACTATGTTCTTGGTTCCCAATCTTGAAAAAAATAGG-GTCTGTTTTGAGAATTGATGCTTA
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAG-CTGTTACGAGAATCGATGCTTG
** *** * * * ** *
189831 TTTTATTTATCTGATGAACTTTGATTTTAAGGAAAAT-TGGACAAAGAAAAGATTTTCACACTAA
257 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAA
* * * * ** * *
189895 AGAAAATCAACAGTATCATTTACCCTAACT-AGGACAATGTGTTTATAGTGATTAATTACCAAAT
321 AGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * ** *
189959 GAATGACA-ACCATTACTTGATTCCTTGTTTGTCTCATTTAAGGCAAAAACTTAGACTTTACAAA
385 GAATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAA
* * * * * * *
190023 AATTAGTGGGAAGAAAGCCTTTCTTG-GAAAATCAATGCGTCAATGTCGTTTATCCTTGTGAGAA
449 AATTGGTGGGAAGAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
* * * * *
190087 AACTATGATTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATATTTGTTTT
513 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
* * * * * *
190152 ATTTAAAAGACAAACTTTGATT-TGTTCGAAAACTGTGGAAGGAAAAGCTTTTTTTTGCGACACC
578 ATTTAAGAGACAAACTTTGATTCT-ATCAAAAACGGTGGAA-GAAAAGC-TTTTCTTGTGACACC
** * * * * * *
190216 AAAGCATCAATGTCAGGTA-CGCTAATAGAGGGAATCTATTTTTGGATCCCAATCTTGAAAGGAA
640 AAAGCATCAATGTCTTGTATC-CTAAGA-AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA
* * * * ** *
190280 TGGAGGCTGTAATGAAAATCGATGCTTGTTTTATTTAA-GGATTGAATTTTGATTATAAGGAAAA
703 TGG-GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGA-TGAATTTTGATTTTAAGGAAAA
* * * *
190344 TAAGGCGAAGAAAAGACTTT-CATGCAAAA-AAAATCATCAGTATCGTTTATCCTAACAAGGAGA
766 TAAGGCAAAGAAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGA
* * * *
190407 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGCTCATTACTAGAATCTATGTTTGTATCTT
830 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
190472 TTGAGGCACGAACTT-GACTTTATAAAAATTGGTGGGAAGAAAGACTTTCTTGC
895 TTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
190525 GAAACCAAAGCGTCAAAATCTTTTATCCTTATGAGAAGATTAT-ATTTATGGTGCCTAATCCT-A
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGA-TTATGGTGCCTAATCCTGA
* * * *
190588 -AAAAGATTGGGGATTAGTTTGACTATTCATATTTGTCTTATTTAAGGGACAAACTTTGATTCTA
65 TAAAA-A-TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * *
190652 TGAAAAACAGTGGATA-GAAAAGCTTTTCTTGT-GACACCAAAACATCAATGTCTTGTATCCTAA
128 TCAAAAACAGTGGA-AGGAAAAGCTTTT-TTGTGGACACCAAAGCATCAATGTCATGTATCCT-A
* * * * *
190715 ATGGA--GAATGTGCTCATGGTTCCAAATCTTGAAAACAATGGAGACTGTTACAAGAATCGATGC
190 ATGGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG-CTGTTACGAGAATCGATGC
* * * * * *
190778 TTATCATATTTAAGGGACGAGTTTTGATTCTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGTA
254 TTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA
* ** * * *
190843 AAAGAAAATCATCAATATCATTTAT-TTCGCTCAGGAGAATGTGTTTATAGTTCCTAATCACATA
319 AAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * **
190907 ATGAATGATGATCATTACTAGAATCCATGTTTTTCTCATTTTC-GGGATGAACTTAGACTTTAAA
383 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTCAGGCATGAACTTAGACTTTACC
* * *
190971 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGGGAATCTTTATGAGA
447 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* *
191036 AGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGACTAATT-ATGTTTGTC
512 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT-ATTCATGTTTGTC
* * * * * ***
191100 TTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGATGGAAAAGCTTTTTTTGCGATGGC
576 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACC
* * * * * * * *
191165 AAAGCATCAATGTCATGTGTGCTAATAGAGGGAATTTGTTTTTGGATCCCAATCTTGAAAGGAAT
640 AAAGCATCAATGTCTTGTATCCTAAGA-AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* * ** * *
191230 -GGACGCTGTAACGAGAATTGATGCTTGTTTTATTTAAGGAATGAATTTTGATTATAAGGAAAAT
704 GGGA--CTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
** * **
191294 AAGGTGAAGAAAAGACTTT-CATGCAAAAAAAAAATCATC-ATATCATTTATCCTAACGAGGAGA
767 AAGGCAAAGAAAAGA-TTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGA
* * * * ** * *
191357 ATGCGTTTATAGTACCTAATCACAAAAAGAATGAAGATCAATACTAGAATCTGTCTTTGTTTCAT
830 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * *
191422 TTGAGGCACGAACATAAACTTTACAAGAATTGGTAGGAAGAAAGCCTTTCGTGC
895 TTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * *
191476 GAAACCAAAGCGTCAATATCGTGTATCTTTATGAGACGACCATGTTTATGGTGCCAAATCATGA-
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * * *
191540 ATAGAATGGGGATTAGTATGACTATTC-TGGTTTGTCTTATTGAAGGGACAAACTTTGATTCTAT
66 A-AAAATGGGGATTAGTATGACTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * * *
191604 CAAAAATAATGGACA-GAAAAGCTTTTCTTGT-GACACCAAAGCATCAATGTCTTGTATCCTAAA
129 CAAAAACAGTGGA-AGGAAAAGCTTTT-TTGTGGACACCAAAGCATCAATGTCATGTATCCTAAT
* * ** * * *
191667 GAAGAGAATGTGTTCTTTCTTCCTAATCTTGAAAAGAATAGAGGCTGTTACAAGAATCGATGCTT
192 GGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGATGCTT
* * * * *
191732 GTCATATTTCAGGGATGAATTTTGATTTTAAGGAAAACAGGGCAAAGAATAGTTTTCCATGCAAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
191797 AGAAAACCATCAATATCATTTATCCTAAT-ACGGAGAATGTGTTTATAGCGCCAAATCACAAGAT
321 AGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* ** *
191861 GAAT-ATAGATCATTACTA-AAGTCCATGTTTGTCTCATTTTAGGCACAAACTTAGACTTTACAA
385 GAATGA-AGATCATTACTAGAA-TCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCA
* * * *
191924 AAATTGGTTGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTCTATGCTTATGAGAA
448 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
** * *
191989 GACTATGTTTACAGTGCCTAATCCTGAAAAGAATGGTGATTAGCATGACTATTCATGTTTGTCTT
513 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
** * * *
192054 ATTTAAGAGACAAACTTAAATTCTATCAAAAGCGGTGGACAGAAAAGCTTTTCTTATGGCACCAA
578 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACCAA
* **** * *
192119 AGCATCAATGTCCTT-TTTCCTAATGAAGGGAATGTGTTCTTAAAACCTAATCTTGAAAGGAATG
642 AGCATCAATGT-CTTGTATCCTAA-GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
* * * *
192183 GAGACTATTACGAGAATTGATGCTTGTCATTTTTTAGGGATGAATTTTGATTTTAAGGAAAATAA
705 G-GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAA
* * *
192248 GGCAAAGAAAAGATTTCCACGC-AAAGAAAATCATCAATATCATTTATCTTAACAAGGAGAATGT
769 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGT
* * * * * * *
192312 GTTTATGGTGCCTAATCAGAAAATAAAGGAAGATGATTACTAGAATCCATGATTGTCTCATTTGA
834 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCA
* * * * *
192377 GGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCTTTTTTTTTC
899 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC-CTTTCTTGC
* * * * * *
192428 GAAACCAAAGCATCAATATTGTGTATCTTTATGTGAAGACTATGTTTACGGTGCCTAATCTTGA-
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * * * * *
192492 ATAGAATAGGAATTAGAATGACTATTCATGTTTGTCTCATTTAATAGACAAACTTTGATTTTATC
66 A-AAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * *
192557 AAAAA-AGGTGGAAGGAAAAGCTTTTTT-TGTGACACCAAAGCATTAGTGTCTTGTATCCTAAAG
130 AAAAACA-GTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATCCTAATG
* * *
192620 AAGGGAATGTGTTCTTGGTTCCTAATCTTGACAAA-AATGGAGACTGTTACGGGAATCGATGCTT
193 GAGGGAATGTGTTCTTGGTTCCCAATCTTGA-AAAGAATGGAG-CTGTTACGAGAATCGATGCTT
** * * *
192684 GTCATATTTAAGAAATGAATTTTGATTTTAAGGAAAATAAGGCAAA-AAAATATTTCCACGCTAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
192748 AGAAAATCATCAGTATCATTTATCCTAACT-AGGAGAATATGTTTGTAGTGCCTAATCACAAAAT
321 AGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * **
192812 GAATGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGGCAAGAACTTAGACTTTAAAAAA
385 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAAA
* * * * *
192877 ATTGGTAGGG-AGAAAGCCTTTTTTGCGAAATCAAAGCATCAATATAGTGTATCTTTATGAGAAA
450 ATTGGT-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * * * *
192941 ACTATGTTTACGGTGCTTAATCTTGGATAGAATGGGAATTAGTATGACTATTCATGTTTGTCTAA
514 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * * * * *
193006 TTTAAGAGACAAATTTTGATTTTATAAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACCACA
579 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGCTTTTCTTGTGACACCAAA
* * * * * * *
193071 GCATCAATGTCTTATATCCTAAAGAAGGGAATGCGTTATTGGTTCCTAATCTTAAAAAGAGTAGA
643 GCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GG
* * *
193136 GACTGTTACGGGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAATATAAGG
706 GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG
* ** * * * *
193201 CAAAGAAAATATTTCCACACTAAAGAAAATCATCAGTATCATTTATCCTAACAAGGAGAATATGT
771 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGT
* * * *
193266 TTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGG
836 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGG
* *
193331 CACGAACTTAGACTTTAAAAAAATTGGTAGGG-AGAAAGCCTTTTTTGC
901 CACGAACTTAGACTTTACAAAAATTGGT-GGGAAGAAAGCCTTTCTTGC
* * * * * * * * * *
193379 GAAATCAAAGCATCAATATTTC-CGTATCTTTTTGTGAAAACTATGTTTACGGTCCCTAATCTTG
1 GAAACCAAAGCATCAATA--TCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCT-
* * *
193443 GAT-AGAATGGGAATTAGTATGACTATTCATGTTTGTCTAATTTAAGAGACAAACTTTGATTTTA
63 GATAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * * *
193507 TC--AAACGGTAGAAGGAAAAGCTTTTTT-TGTGACACGAAAGCATCAATGTCTTGTATCCTAAA
128 TCAAAAACAGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * *
193569 GAAGGGAATGTGTTCTTGGTTCCTAATCTTAAAAAGAATAGAGACTGTTACGGGAATCAACGCTT
192 GGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG-CTGTTACGAGAATCGATGCTT
* * * * * ** *
193634 GGCATATTTAAGGGATGAATTTTGATTTTAAGGAATATAAGGGAAAGAAAAAATTTTCACACTAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
193699 AGAAAATCATCAGTATCATTTATCCTAACT-AGGAGAATATGTTTGTAGTGCCTAATCACAAAAT
321 AGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * **
193763 GAATGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAA
385 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAAA
* * * * * * ** *
193828 ATTGATAGGG-AGAAAGCCTTTTTTGCGAAATCAAAGCATCAATATTGTGTATCTTTTTCTGAAA
450 ATTGGT-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
* * * * * *
193892 ACTATGTTTACGGTGCCTAATCTTGGATAGAATGGGAATTAGTATGACTATTCATGTTTGTCTAA
514 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * *
193957 TTTAAGAGACAAACTTTGATTTTATCAAAAACGGTAGAAGGAAAAGCTTTTTTTTGTGACACCAA
579 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGC-TTTTCTTGTGACACCAA
* *
194022 AGCATCAATGTCTTGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCTAATCTTAAAAAGAATAG
642 AGCATCAATGTCTTGTATCCT-AAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-G
* * * *
194087 AGATTGTTACGGGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAATATAAG
705 GGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAG
* * * * *
194152 GCAAAGAAAATATTTCCACGCTAAAGAAAATCATCAGTATCATTTATCCTAACT-AGGAGAATAT
770 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TAAGGAGAATGT
* * * *
194216 GTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCAAGTTTGTCTCATTTAA
834 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCA
* * *
194281 GGCACGAACTTAGACTTTAAAAAAATTGGTGGGGAGAAAGCCTTTTTTGC
899 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * * *
194331 GAAATCAAAGCATCAATATTGTGTATCTTTATGTGAAAACTATGTTTACGGTGCCTAATCTTGGA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCT-GA
* * * * * * *
194396 T-AGAATGGGAATTAGTATGACAATTCAGGTTTGTCTAATTTAAGAAACAAACTTTGATTTTATA
65 TAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * * * *
194460 AAAAACGGTAGAAGGAAAAGCTTTTTT-TGTGACACGAAAGCATCAATGTCTTGTATCCTAAAGA
130 AAAAACAGTGGAAGGAAAAGCTTTTTTGTG-GACACCAAAGCATCAATGTCATGTATCCTAATGG
** * *
194524 AGGGAATGTGTTCTTGGTTCTTAATCTTAAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGT
194 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG-CTGTTACGAGAATCGATGCTTGT
* ** *
194589 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAATAAAAGATTTCCACACTAAAG
258 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
194654 AAAATCATCAGTATCATTTATCCTAACT-AGGAAAATGTGTTTATAGTGCCTAATCATAAAATGA
323 AAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* *
194718 ATGAAGATCATTACTAGAATCCATGTTTGCCTCATTT-AGGGCATGAACTTAGGCTTTA-CAAAA
387 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCA-GGCATGAACTTAGACTTTACCAAAA
* * * * *
194781 TTGGTGGGAAAAAAGCCTTTTTTGCGAAACCAAACCATCAATATCGAGTATCCCTATGAGAAGAC
451 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC
** * * * *
194846 TATGACTATGGTGCCTAA-CACTGAAAAGAATGGGGATTAGTTTGACTATTCTTGTTTTTCTTTT
516 TATGTTTATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * * *
194910 TTAAGCGACAATCTTTGATTTTATCAAAAACGGTGGAAGTAAAAG-TTTTTTTGCGACACCAAAG
580 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAG-AAAAGCTTTTCTTGTGACACCAAAG
* * * * * *
194974 CATCAATGTCATGTATGCTAACGGAGGGAATGTGTTTTTGCTTCCCAATCTTGAAAAGAGTGGAA
644 CATCAATGTCTTGTATCCTAA-GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG--
* ** *
195039 GA-TGTAACGAGAATCGATGCTTGTTTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
706 GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG
* * * * *
195103 CGAAGAAAAGATTTTCGTGTAAAA-AACAATCATCACTATCATTTATCCTAATGAA-GAGAATGT
771 CAAAGAAAAGATTTCCATGCAAAAGAA-AATCATCAATATCATTTATCCTAAT-AAGGAGAATGT
* *
195166 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTAGTCTCATTTCA
834 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCA
* * * * *
195231 AGCATGAACTTAAATTTTACAAGAATTGGTGGGAAGAAAGCCTTTCTTGC
899 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
** ** * * * * * * *
195281 GAAACCAAAGTGTCAATGCCATGTATCTTTATGAGAAGAGTATGTTTATAGTGCGTAATCCT-AA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * * ** * **
195345 ATAAAATGGGGATTCGTATGACTATTAATGTTTGCCTTAAATAA-AGGATAAACTTCAATTTTAT
66 A-AAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTTTAT
* * * * *
195409 CAAAAAAAATGGACA--AAAAGCTTTTCTTGT-GACACCAAAGTATCAATGTCTTGTATCCTAAA
129 CAAAAACAGTGGA-AGGAAAAGCTTTT-TTGTGGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * * * *
195471 GAAGAGAATGTGTTCTTGATTCCTAAACTTCAAAAGAATAGAGACTGTTATGAGAATCCATGCTT
192 GGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG-CTGTTACGAGAATCGATGCTT
* * **
195536 GTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAAGGAAAAGAATGGATTTCCATGCAAA
256 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
195601 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCATAAAATG
321 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * **
195666 AAT-ATGGATCTTTACTAGAATCCATGTCTGTCTTATTTCAAGCATGAACTTAGACTTTATAAAA
386 AATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAAA
* * * * * * * *
195730 ATTAGTGGGAAGAAAGACTATCTTGTGAAACCAAAGCATCAATATTGTGTGTGCTTATGAGAAGG
450 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGA
* * *
195795 CTATGTTTATAGTGCCTAATCCTGAAAAGAATGGTGATTAGCATGACTATTCATGTTTGTCTTAT
515 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * *
195860 TTGAGAGACAAACTTTGATTCTATCAAAAACGGTAGGCAA-AAAAACTTTTCTTGTGACCCCAAA
580 TTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GG-AAGAAAAGCTTTTCTTGTGACACCAAA
* ** * *
195924 GCATCAATGTCATCAATCCTAATGAAGGGAATGTGTTCTTGGTACCTAATCTTGAAAAGAATGGA
643 GCATCAATGTCTTGTATCCTAA-GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG-
* * *
195989 GACTATTACGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTGGTTTTAAGGAAAATAAGG
706 GACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGG
* *
196054 TAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAA-GAGAATGTG
771 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAATGTG
* *
196118 TTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTGTCATTTCAG
835 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAG
* ***
196183 GCATGAACTTAGACTTTACAAAAATTGGCAAGAAGAAAGCCTTTCTTGC
900 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * *
196232 AAAACCAAAGCATCAATGTCTTGTATCC---------GACTATGATTATGGTGCCTAATCTTGA-
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
* * *
196287 AAATAATGGGGATTATTATGACTGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTC
66 AAA-AATGGGGATTA--GT-A-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT
* * * ** * * *
196352 CATGAAGAATGGTGGAAGGAAAAGCTTTTCTTGT-GACACCAAAGCATCAATGTCTTATGTCCTA
126 TATCAAAAACAGTGGAAGGAAAAGCTTTT-TTGTGGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * *
196416 AAGAAGCGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGATACTGTTACGAGAATGGATGC
190 ATGGAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-GCTGTTACGAGAATCGATGC
* * * *
196481 TTGACGTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGAAAAGAAAAGATTTTCATGCA
254 TTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA
*
196546 AAAG-AAATCATCAATATCATTTATACTAATGAGG
319 AAAGAAAATCATCAATATCATTTATCCTAATGAGG
196580 TGAAAATCAT
Statistics
Matches: 11555, Mismatches: 1810, Indels: 634
0.83 0.13 0.05
Matches are distributed among these distances:
940 46 0.00
941 6 0.00
942 31 0.00
943 1 0.00
944 2 0.00
945 2 0.00
946 71 0.01
947 177 0.02
948 631 0.05
949 1008 0.09
950 1701 0.15
951 2858 0.25
952 2267 0.20
953 815 0.07
954 448 0.04
955 205 0.02
956 378 0.03
957 158 0.01
958 20 0.00
962 48 0.00
963 295 0.03
964 200 0.02
965 133 0.01
966 1 0.00
969 1 0.00
972 5 0.00
973 47 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (948 bp):
GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCCTGAT
AAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
AAAACAGTGGAAGGAAAAGCTTTTTTGTGGACACCAAAGCATCAATGTCATGTATCCTAATGGAG
GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGCTGTTACGAGAATCGATGCTTGTCAT
ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCATGAACTTAGACTTTACCAAAATTGGT
GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACGGTGGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAAT
GTCTTGTATCCTAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGGACTGTTACG
AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTA
GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
Found at i:194560 original size:159 final size:159
Alignment explanation
Indices: 192468--194566 Score: 546
Period size: 159 Copynumber: 13.2 Consensus size: 159
192458 ATGTGAAGAC
* * * * * *
192468 TATGTTTACGGTGCCTAATCTTGAATAGAAT-AGGA-ATTAGAATGACTATTCATGTTTGTCTCA
1 TATGTTTATGGTGCCTAATCTTAAAAAGAATGA-GACATTAGTATGACAATTCATGTTTGTCTAA
* * *
192531 TTTAATAGACAAACTTTGATTTTATCAAAAAA-GGTGGAAGGAAAAGCTTTTTTTGTGACACCAA
65 TTTAAGAGACAAACTTTGATTTTA--AAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAA
* * *
192595 AGCATTAGTGTCTTGTATCCTAAAGAAGGGAA
128 AGCATCAATATCTTGTATCCTAAAGAAGGGAA
* * * * ** *
192627 TGTGTTCT-TGGTTCCTAATCTTGACAAA-AATGGAGAC--T-GTTACGGGAA-TCGATGCTTGT
1 TATGTT-TATGGTGCCTAATCTT-AAAAAGAAT-GAGACATTAG-TATGACAATTC-ATGTTTGT
* ** * * * ** ****
192686 C-ATATTTAAGAAATGAATTTTGATTTTAAGGAAAATAAGGCA-AA--AAAATATTTCCACGCT-
61 CTA-ATTTAAGAGACAAACTTTGATTTTAA--AAAA-ACGGTAGAAGGAAAAGCTTTTTTTG-TG
* * * **
192746 A-AAGAAAATCATCAGTATCATT-TATCCT-AACTAGGAGAA
121 ACACG-AAAGCATCAATATC-TTGTATCCTAAAGAAGG-GAA
* * ** * * * *
192785 TATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTA-G--AATTCAAGTTTGTCTC
1 TATGTTTATGGTGCCTAATCTTAAAAAGAATG-AGA-CATTAGTATGACAATTCATGTTTGTCTA
* * * * * *
192847 ATTTAAG-G-CAAGAACTTAGACTTTAAAAAAATTGGTAG--GGAGAAAGCCTTTTTTGCGAAAT
64 ATTTAAGAGAC-A-AACTTTGATTTTAAAAAAA-CGGTAGAAGGA-AAAGCTTTTTTTGTGACA-
** * * * **
192908 C-AAAGCATCAATATAGTGTATCTTTATG-AGAAAA
124 CGAAAGCATCAATATCTTGTATCCTAAAGAAGGGAA
* * ** * * *
192942 CTATGTTTACGGTGCTTAATCTTGGATAGAATGGGA-ATTAGTATGACTATTCATGTTTGTCTAA
1 -TATGTTTATGGTGCCTAATCTTAAAAAGAATGAGACATTAGTATGACAATTCATGTTTGTCTAA
* * *
193006 TTTAAGAGACAAATTTTGATTTTATAAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACCACA
65 TTTAAGAGACAAACTTTGATTTTA-AAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAA
* *
193071 GCATCAATGTCTTATATCCTAAAGAAGGGAA
129 GCATCAATATCTTGTATCCTAAAGAAGGGAA
** * * * ** *
193102 TGCG-TTATTGGTTCCTAATCTTAAAAAGAGTAGAGAC--T-GTTACGGGAA-TCAATGCTTGTC
1 TATGTTTA-TGGTGCCTAATCTTAAAAAGAAT-GAGACATTAG-TATGACAATTC-ATGTTTGTC
* ** * * * ****
193162 -ATATTTAAGGGATGAATTTTGATTTTAAGGAATATAA-GGCA-AA-GAAAA---TATTTCCACA
62 TA-ATTTAAGAGACAAACTTTGATTTTAA--AA-A-AACGGTAGAAGGAAAAGCTTTTTTTGTGA
* * * *
193220 CTAAAGAAAATCATCAGTATCATT-TATCCT-AACAAGGAGAA
122 C--ACG-AAAGCATCAATATC-TTGTATCCTAAAGAAGG-GAA
* * ** * * * *
193261 TATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTA-G--AATTCAAGTTTGTCTC
1 TATGTTTATGGTGCCTAATCTTAAAAAGAATG-AGA-CATTAGTATGACAATTCATGTTTGTCTA
* * * * * * *
193323 ATTTAAG-GCACGAACTTAGACTTTAAAAAAATTGGTAG--GGAGAAAGCCTTTTTTGCGAAATC
64 ATTTAAGAG-ACAAACTTTGATTTTAAAAAAA-CGGTAGAAGGA-AAAGCTTTTTTTGTGACA-C
* *** * **
193385 -AAAGCATCAATAT-TTCCGTATCTTTTTG-TGAAAA
125 GAAAGCATCAATATCTT--GTATCCTAAAGAAGGGAA
* * ** * * *
193419 CTATGTTTACGGTCCCTAATCTTGGATAGAATGGGA-ATTAGTATGACTATTCATGTTTGTCTAA
1 -TATGTTTATGGTGCCTAATCTTAAAAAGAATGAGACATTAGTATGACAATTCATGTTTGTCTAA
**
193483 TTTAAGAGACAAACTTTGATTTT-ATCAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAAG
65 TTTAAGAGACAAACTTTGATTTTAAAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAAG
*
193547 CATCAATGTCTTGTATCCTAAAGAAGGGAA
130 CATCAATATCTTGTATCCTAAAGAAGGGAA
* * * ** * * *
193577 TGTGTTCT-TGGTTCCTAATCTTAAAAAGAATAGAGAC--T-GTTACGGGAA-TCAACGCTTGGC
1 TATGTT-TATGGTGCCTAATCTTAAAAAGAAT-GAGACATTAG-TATGACAATTC-ATGTTTGTC
* ** * * ** ****
193637 -ATATTTAAGGGATGAATTTTGATTTTAAGGAATATAA-GG--GAAAGAAAAAATTTTCACACT-
62 TA-ATTTAAGAGACAAACTTTGATTTTAA--AA-A-AACGGTAGAAGGAAAAGCTTTT-TTTGTG
* * * **
193697 A-AAGAAAATCATCAGTATCATT-TATCCT-AACTAGGAGAA
121 ACACG-AAAGCATCAATATC-TTGTATCCTAAAGAAGG-GAA
* * ** * * * *
193736 TATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTA-G--AATTCAAGTTTGTCTC
1 TATGTTTATGGTGCCTAATCTTAAAAAGAATG-AGA-CATTAGTATGACAATTCATGTTTGTCTA
* * * * * * * *
193798 ATTTAAG-GCACGAACTTAGACTTTAAAAAAATTGATAG--GGAGAAAGCCTTTTTTGCGAAATC
64 ATTTAAGAG-ACAAACTTTGATTTTAAAAAAA-CGGTAGAAGGA-AAAGCTTTTTTTGTGACA-C
* ***
193860 -AAAGCATCAATAT-TGTGTATCTTTTTCTGAA---AA
125 GAAAGCATCAATATCT-TGTATC--CTAAAGAAGGGAA
* ** * * *
193893 CTATGTTTACGGTGCCTAATCTTGGATAGAATGGGA-ATTAGTATGACTATTCATGTTTGTCTAA
1 -TATGTTTATGGTGCCTAATCTTAAAAAGAATGAGACATTAGTATGACAATTCATGTTTGTCTAA
* *
193957 TTTAAGAGACAAACTTTGATTTTATCAAAAACGGTAGAAGGAAAAGCTTTTTTTTGTGACACCAA
65 TTTAAGAGACAAACTTTGATTTTA-AAAAAACGGTAGAAGGAAAAGC-TTTTTTTGTGACACGAA
*
194022 AGCATCAATGTCTTGTATCCTAAAGAAGGGAA
128 AGCATCAATATCTTGTATCCTAAAGAAGGGAA
* * * * ** *
194054 TGTGTTCT-TGGTTCCTAATCTTAAAAAGAAT-AGAGATT-GTTACGGGAA-TCGATGCTTGTC-
1 TATGTT-TATGGTGCCTAATCTTAAAAAGAATGAGACATTAG-TATGACAATTC-ATGTTTGTCT
* ** * * ** ****
194114 ATATTTAAGGGATGAATTTTGATTTTAAGGAATATAA-GGCA-AA-GAAAATATTTCCACGCT-A
63 A-ATTTAAGAGACAAACTTTGATTTTAA--AA-A-AACGGTAGAAGGAAAAGCTTTTTTTG-TGA
* * * **
194175 -AAGAAAATCATCAGTATCATT-TATCCT-AACTAGGAGAA
122 CACG-AAAGCATCAATATC-TTGTATCCTAAAGAAGG-GAA
* * ** * * * *
194213 TATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTA-G--AATTCAAGTTTGTCTC
1 TATGTTTATGGTGCCTAATCTTAAAAAGAATG-AGA-CATTAGTATGACAATTCATGTTTGTCTA
* * * * * * * *
194275 ATTTAAG-GCACGAACTTAGACTTTAAAAAAATTGGT-G-GGGAGAAAGCCTTTTTTGCGAAATC
64 ATTTAAGAG-ACAAACTTTGATTTTAAAAAAA-CGGTAGAAGGA-AAAGCTTTTTTTGTGACA-C
* * * * **
194337 -AAAGCATCAATAT-TGTGTATCTTTATG-TGAAAA
125 GAAAGCATCAATATCT-TGTATCCTAAAGAAGGGAA
* ** * * *
194370 CTATGTTTACGGTGCCTAATCTTGGATAGAATGGGA-ATTAGTATGACAATTCAGGTTTGTCTAA
1 -TATGTTTATGGTGCCTAATCTTAAAAAGAATGAGACATTAGTATGACAATTCATGTTTGTCTAA
*
194434 TTTAAGAAACAAACTTTGATTTTATAAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAA
65 TTTAAGAGACAAACTTTGATTTTA-AAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAA
*
194499 GCATCAATGTCTTGTATCCTAAAGAAGGGAA
129 GCATCAATATCTTGTATCCTAAAGAAGGGAA
* * *
194530 TGTGTTCT-TGGTTCTTAATCTTAAAAAGAATAGAGAC
1 TATGTT-TATGGTGCCTAATCTTAAAAAGAAT-GAGAC
194567 TGTTACGAGA
Statistics
Matches: 1353, Mismatches: 395, Indels: 382
0.64 0.19 0.18
Matches are distributed among these distances:
155 25 0.02
156 33 0.02
157 114 0.08
158 426 0.31
159 551 0.41
160 150 0.11
161 33 0.02
162 19 0.01
163 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.33
Consensus pattern (159 bp):
TATGTTTATGGTGCCTAATCTTAAAAAGAATGAGACATTAGTATGACAATTCATGTTTGTCTAAT
TTAAGAGACAAACTTTGATTTTAAAAAAACGGTAGAAGGAAAAGCTTTTTTTGTGACACGAAAGC
ATCAATATCTTGTATCCTAAAGAAGGGAA
Found at i:199200 original size:475 final size:474
Alignment explanation
Indices: 198284--200140 Score: 2086
Period size: 475 Copynumber: 3.9 Consensus size: 474
198274 ATGACGTCAG
* * * * * *
198284 AAGAATAGAGACTGTTATGAGAATCAAGGCTTGTCATCTTT-AAGCGATGAATTTTGATTTTTAG
1 AAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAAG-GATGAATTTTGATTTTAAG
* * * * *
198348 TAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATTATCAATATCATTTATCTTAATAAG
65 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-TAATGAG
* * * * * *
198413 GAGAAAGTGTTTATAGTGCCTAATCACAAAATGAAT-ATAGATCATTATTGGAATGCATGTCTGT
129 AAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGT
* * * ** *
198477 CTCATTTCAGGCACGAACTTAGACTTAACAAAAATTGGTGGGAA-AAAAGATTTTCTTGCGAAAC
193 ATCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAA-CCTTTCTTGCAAAAC
** *** * * *
198541 CAAAGTGTCAATATTGGGTATACTTATGAGAAAACTATGTTTATGGTGCCTAATC-CTAAAAAAA
257 CAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGATTATGGTGCCTAATCTCGAAAAAAA
* * * *
198605 TGGTGATTAGCATGAATCTTCATGTTTGTCTTATTT-GAAAGACAAACTTTGATTCTATCAAAAA
322 TGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAG-GAGACAAACTTTGATTCTATCAAAAA
* * *
198669 TGGTGGACTA-AAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATT-TATCCTAAAGAAGGG
385 CGGTGGAC-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC-TTGTGTCCTAAAGAAGGG
* *
198732 AATGTGTTCTTGGTACCTAATCTTGAA
448 AATGTGTTCTTGGTTCCCAATCTTGAA
*
198759 AAGAATGGAGACTATTACGAGAATCGATGCTTGTCATATTT-AAGTGATGAATTTTGATTTTAAG
1 AAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAAG-GATGAATTTTGATTTTAAG
* *
198823 GAAAATAAGGCATAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCATAATGAG
65 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-TAATGAG
* * * *
198888 AAGAATGTGTTTATA-TCCCTAATCACGAAATGAATGAAAATCATGACTAGAATCCATGTTTGTA
129 AAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTA
* * *
198952 TCATTTTAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAACCTTTCTTGCAAAACCA
194 TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAAACCA
* *
199017 AAGCATCAATGTCATGTATCCTTATGAGAAAACTATGATTATGGTGCCTAATCTCGAAAAGAATG
259 AAGCATCAATATCATGTATCCTTATGAGAAAACTATGATTATGGTGCCTAATCTCGAAAAAAATG
* ** * * *
199082 AGGATTAGTATGACTTTTCATGTTTGTAATATTTAGGAGACAAACTTTGATTTTATAAAAAATGG
324 -GGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGG
* * * *
199147 TGGA-ACGAAAAGCTTTTCTTGTTACACCAAGGTATCAATGTCTTGTGTCCTAAAGAAGCGAATG
388 TGGACA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTGTCCTAAAGAAGGGAATG
199211 TGTTCTTGGTTCCCAATCTTGAA
452 TGTTCTTGGTTCCCAATCTTGAA
*
199234 AAGAATGG-GCACTGTTACGAGAATC-AGTGCTTCTCATATTTAAAGGATGAATTTTGATTTT-A
1 AAGAATGGAG-ACTGTTACGAGAATCGA-TGCTTGTCATATTTAAAGGATGAATTTTGATTTTAA
* * * * * * *
199296 TGAAATACAAGGTAAAGAAAAGATTTTCATACAAAAGAAAATCGTGAATATCATTTATTCTAATG
64 GGAAA-ATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA-TCTAATG
* * **
199361 AGGAGAATGTGTTTATAGTGTCTAATCACAATTTGAATGAAGATCATTACTAGAATCCATGTTTG
127 AGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
** * * *
199426 TCA-CATTTCAAGG-GTGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGCAAA
192 T-ATCATTT-AAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAA
* * * * * *
199489 ACCAAAGCATCAATGTCAAGTATCCTTACGAGAAAACTATGACTATGGTGCCTAA-CACAAAAAA
255 ACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGATTATGGTGCCTAATCTC-GAAAA
* * * *
199553 AAATGGGAATTAGTATCACTGTTCATGATTGTCTTATTTTA-GAGACAAACTTTGATTCTATCGA
319 AAATGGG-ATTAGTATGACTATTCATGTTTGTCTTA-TTTAGGAGACAAACTTTGATTCTATCAA
* * * * * *
199617 AAACAGTGGA-AGCAAAAG-TTTTTTTCCTGACAGCAAAGCATCAATGTCATGTGTGCTAATAG-
382 AAACGGTGGACAG-AAAAGCTTTTCTT-GTGACACCAAAGCATCAATGTCTTGTGTCCTAA-AGA
*
199679 AGGGAATGTGTT-TCGGTTCCCAATCTTGAA
444 AGGGAATGTGTTCTTGGTTCCCAATCTTGAA
* * * * * * *
199709 AAGAATCGAGGCTGTAATGAGAATTGCTGCTTGTCTTATTTAAAGGATGAATTTTGATTTTAAGG
1 AAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAAGGATGAATTTTGATTTTAAGG
* * **** * * *
199774 AAAATAGGGCAAAGAAACGATTTTTGGGCAAAAAAAAATCATCAGTATCATTTATCCTAACGAGA
66 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT-CTAATGAGA
* * *
199839 AGAATGTGTTCATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
130 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT
* * * * * * ** *
199904 CATTTGAGGTACAAACCTAGACTTTACAAGAATTTGTGGGAAGAAAGTCTTTCTTGCGAAACCAA
195 CATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAAACCAA
* * * * * * * * * *
199969 AGTACCAATATCGTTTATCTTTATGAGAAGACTATGTTTATGGTGCCAAATCAT-GAATAGAATG
260 AGCATCAATATCATGTATCCTTATGAGAAAACTATGATTATGGTGCCTAATC-TCGAAAAAAAT-
200033 GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGG-GACAAACTTTGATTCTATCAAAAACG
323 GGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGGAGACAAACTTTGATTCTATCAAAAACG
*
200097 ATGGACAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCT
387 GTGGACAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCT
200141 CTCTCATTTC
Statistics
Matches: 1170, Mismatches: 177, Indels: 70
0.83 0.12 0.05
Matches are distributed among these distances:
473 1 0.00
474 152 0.13
475 736 0.63
476 271 0.23
477 10 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
AAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAAGGATGAATTTTGATTTTAAGG
AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTAATGAGAA
GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTATC
ATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCAAAACCAAA
GCATCAATATCATGTATCCTTATGAGAAAACTATGATTATGGTGCCTAATCTCGAAAAAAATGGG
ATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGG
ACAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTGTCCTAAAGAAGGGAATGTGTT
CTTGGTTCCCAATCTTGAA
Found at i:200324 original size:241 final size:241
Alignment explanation
Indices: 199921--200369 Score: 659
Period size: 241 Copynumber: 1.9 Consensus size: 241
199911 GGTACAAACC
* * * * * *
199921 TAGACTTTACAAGAATTTGTGGGAAGAAAGTCTTTCTTGCGAAACCAAAGTACCAATATCGTTTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCTTGCGAAACCAAAGCACCAATATCATGTA
* * * *
199986 TCTTTATGAGAAGACTATGTTTATGGTGCCAAATCATGAATAGAATGGGGATTAGTATGACTATT
66 TCTTTATGAAAAGACTATGTTTATAGTGCCAAATCATGAAAAGAATGGGGATTAGCATGACTATT
*
200051 CATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATCAAAAACGATGGACAGAAAAGCTTTTC
131 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGACAGAAAAGCTTTTC
200116 TTGTGACACCAAAGCATCAATGTCTCTCTCATTTCAGGCATGAACT
196 TTGTGACACCAAAGCATCAATGTCTCTCTCATTTCAGGCATGAACT
* * * *
200162 TAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCTTGTGAAACCAAAGCATCATTATTATGTA
1 TAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCTTGCGAAACCAAAGCACCAATATCATGTA
* * *
200227 TGC-TTATGAAAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGTGATTAGCATGACTAT
66 T-CTTTATGAAAAGACTATGTTTATAGTGCCAAATCATGAAAAGAATGGGGATTAGCATGACTAT
* * * * *
200291 TCATGTTTGTCTTGTTTGAA-AGACAAACTTTGATTCTATCAAAAATGGTGGGCATAAAAGCTTT
130 TCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACGATGGACAGAAAAGCTTT
200355 TCTTGTGACACCAAA
194 TCTTGTGACACCAAA
200370 CCATAAATTT
Statistics
Matches: 183, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
241 180 0.98
242 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (241 bp):
TAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCTTGCGAAACCAAAGCACCAATATCATGTA
TCTTTATGAAAAGACTATGTTTATAGTGCCAAATCATGAAAAGAATGGGGATTAGCATGACTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGACAGAAAAGCTTTTC
TTGTGACACCAAAGCATCAATGTCTCTCTCATTTCAGGCATGAACT
Found at i:200826 original size:716 final size:715
Alignment explanation
Indices: 199440--200856 Score: 1778
Period size: 716 Copynumber: 2.0 Consensus size: 715
199430 ATTTCAAGGG
*
199440 TGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCATCAATGT
1 TGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCATCAATAT
* *
199505 CAAGTATCCTTACGAGAAAACTATGACTATGGTGCCTAACACAAAAAAAAATGGGAATTAGTATC
66 CAAGTATCCTTACGAGAAAACTATGACTATAGTGCCTAACACAAAAAAAAATGGGAATTAGCATC
* * * *
199570 ACTGTTCATGATTGTCTTATTTTAGAGACAAACTTTGATTCTATCGAAAACAGTGGAAGCAAAAG
131 ACTATTCATGATTGTCTTATTTGAAAGACAAACTTTGATTCTATCAAAAACAGTGG-AGCAAAAG
* * * * * * * *
199635 TTTTTTTCCTGACAGCAAAGCATCAATGTCATGTGTGCTAATAGAGGGAATGTGTTTCGGTTCCC
195 TTTTCTTCCTGACACCAAACCATAAATGTCATGTATCCTAATAGAGGGAATGTATTTCGGTACCC
* * * * * * * *
199700 AATCTTGAAAAGAATCGAGGCTGTAATGAGAATTGCTGCTTGTCTTATTTAAAGGATGAATTTTG
260 AAACTTGAAAAGAATCGAGACTATAACGAGAATCGATGCTTATCATATTTAAAGGATGAATTTTG
* * **** *
199765 ATTTTAAGGAAAATAGGGCAAAGAAACGATTTTTGGGCAAAAAAAAATCATCAGTATCATTTATC
325 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCAACGCAAAAAAAAATCATCAATATCATTTATC
* *
199830 CTAACGAGAAGAATGTGTTCATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCCA
390 CTAACGAGAAGAATGTGTTCATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * * *
199895 TGTTTGTCTCATTTGAGGTACAAACCTAGACTTTACAAGAATTTGTGGGAAGAAAGTCTTTCTTG
455 TGTTTGTATCATTTCAGGCACAAACCTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTCG
* * * * *
199960 CGAAACCAAAGTACCAATATCGTTTATCTTTATGAGAAGACTATGTTTATGGTGCCAAATCATGA
520 CAAAACCAAAGCACCAATATCATGTATCTTTATGAGAAGACTATGATTATGGTGCCAAATCATGA
* * * * *
200025 ATAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATC
585 AAAGAACGGGGATTAGTATGACTATTCATGTTTATCATATTTAAGGGACAAACTTTGATTCCATC
*
200090 AAAAACGATGGACAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTCTCTCATTTCAGGC
650 AAAAACGATGGACAGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCTCTCTCATTTCAGGC
200155 A
715 A
* ** *
200156 TGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGAC-TTTCTTGTGAAACCAAAGCATCATTA
1 TGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAG-CTTTTCTTGCAAAACCAAAGCATCAATA
* * * * ** ** *
200220 TTATGTATGCTTATGA-AAAGACTATGTTTATAGTGCCTAATC-CTGAAAAGAATGGTG-ATTAG
65 TCAAGTATCCTTACGAGAAA-ACTATGACTATAGTGCCTAA-CACAAAAAAAAATGG-GAATTAG
* * * **
200282 CATGACTATTCATGTTTGTCTTGTTTGAAAGACAAACTTTGATTCTATCAAAAATGGTGG-GCAT
127 CATCACTATTCATGATTGTCTTATTTGAAAGACAAACTTTGATTCTATCAAAAACAGTGGAGC--
* * *
200346 AAAAGCTTTTCTT-GTGACACCAAACCATAAATTTCATTTATCCTAAT-GAAGGGAATGTATTCT
190 AAAAG-TTTTCTTCCTGACACCAAACCATAAATGTCATGTATCCTAATAG-AGGGAATGTATT-T
* * * * *
200409 TGGTACCCAAACTTGAACA-AATGGAGACTATTACGAGAATCGATGCTTATCATATTTAAGGGAT
252 CGGTACCCAAACTTGAAAAGAATCGAGACTATAACGAGAATCGATGCTTATCATATTTAAAGGAT
* * * *
200473 GAATTTTGGTTTTAAGGAAAATAAGGCATAGAAAAGATTTCAACGCAAAAGAAAATCATTAATAT
317 GAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCAACGCAAAAAAAAATCATCAATAT
* *
200538 CATTTATCCTAATGAGAAGAATGTGTTTATAATGCCTAATCACAAAATGAA-GTAAGATCATTAC
382 CATTTATCCTAACGAGAAGAATGTGTTCATAATGCCTAATCACAAAATGAATG-AAGATCATTAC
* * *
200602 TAGAATCCATGTTTGTATCATTTCAGGCATAAACTTTGACTTTACAAAAATTGGTGGGAAGAAAG
446 TAGAATCCATGTTTGTATCATTTCAGGCACAAACCTAGACTTTACAAAAATTGGTGGGAAGAAAG
* *
200667 CCTTTCTCGCAAAACCAAAGCATCAATGTCATGTAT-TCTTATGAGAAGACTATGATTATGGTGC
511 CCTTTCTCGCAAAACCAAAGCACCAATATCATGTATCT-TTATGAGAAGACTATGATTATGGTGC
* * * *
200731 CTAATCTTGAAAATAACGGGGATTAGTATGACTATTCATGTTTATGATATTTAAGAGG-CAAACT
575 CAAATCATGAAAAGAACGGGGATTAGTATGACTATTCATGTTTATCATATTTAAG-GGACAAACT
* * *
200795 TTGATTCCATCAGAAATGGTGGA-AGGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCT
639 TTGATTCCATCAAAAACGATGGACA-GAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCT
200857 TGTGTCCTAG
Statistics
Matches: 594, Mismatches: 94, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
714 2 0.00
715 7 0.01
716 558 0.94
717 27 0.05
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (715 bp):
TGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCATCAATAT
CAAGTATCCTTACGAGAAAACTATGACTATAGTGCCTAACACAAAAAAAAATGGGAATTAGCATC
ACTATTCATGATTGTCTTATTTGAAAGACAAACTTTGATTCTATCAAAAACAGTGGAGCAAAAGT
TTTCTTCCTGACACCAAACCATAAATGTCATGTATCCTAATAGAGGGAATGTATTTCGGTACCCA
AACTTGAAAAGAATCGAGACTATAACGAGAATCGATGCTTATCATATTTAAAGGATGAATTTTGA
TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCAACGCAAAAAAAAATCATCAATATCATTTATCC
TAACGAGAAGAATGTGTTCATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
GTTTGTATCATTTCAGGCACAAACCTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTCGC
AAAACCAAAGCACCAATATCATGTATCTTTATGAGAAGACTATGATTATGGTGCCAAATCATGAA
AAGAACGGGGATTAGTATGACTATTCATGTTTATCATATTTAAGGGACAAACTTTGATTCCATCA
AAAACGATGGACAGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCTCTCTCATTTCAGGCA
Found at i:201762 original size:476 final size:474
Alignment explanation
Indices: 200142--207566 Score: 7965
Period size: 476 Copynumber: 15.7 Consensus size: 474
200132 TCAATGTCTC
* * * *
200142 TCTCATTTCAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCTTGTGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * * *
200207 CAAAGCATCATTATTATGTATGCTTATGAAAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAAT-CTGAAAAGAA
* * *
200272 TGGTGATTAGCATGACTATTCATGTTTGTCTTGTTTGAA-AGACAAACTTTGATTCTATCAAAAA
130 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
200336 TGGTGGGCATAAAAGCTTTTCTTGTGACACCAAACCATAAATTTCATTTATCCTAATGAAGGGAA
194 TGGT-GGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* * * * * *
200401 TGTATTCTTGGTACCCAAACTTGAACA-AATGGAGACTATTACGAGAATCGATGCTTATCATATT
258 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* * * *
200465 TAAGGGATGAATTTTGGTTTTAAGGAAAATAAGGCATAGAAAAGATTTCAACGCAAAAGAAAATC
323 TAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * *
200530 ATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATAATGCCTAATCACAAAATGAA-GTAAG
388 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG-AAG
200594 ATCATTACTAGAATCCATGTTTG
452 ATCATTACTAGAATCCATGTTTG
* * ** * * *
200617 TATCATTTCAGGCATAAACTTTGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTCGCAAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * *
200682 CAAAGCATCAATGTCATGTATTCTTATGAGAAGACTATGATTATGGTGCCTAATCTTGAAAATAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-TGAAAAGAA
* * ** * * *
200747 CGGGGATTAGTATGACTATTCATGTTTATGATATTTAAGAGGCAAACTTTGATTCCATCAGAAAT
130 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * * **
200812 GGTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCTTGTGTCCTAGA-GAAACAAA
195 GGTGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTA-ATGAAAGGAA
* * * * * *
200876 TGTGTTCTTGGTTCCTAATCTTGAAAAGAATAGATACTGTTATGAGAACCGATGCTTGTCGTATT
258 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* *
200941 TAAGGGATGAATTTTGATTTTAAGGAAAATAAGGTAAAGAATAGATTTCCATGCAAAAGAAAATC
323 TAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * *
201006 ATCAATATCATTTTTTTCTAATGAGGAGAATATGTTTATAGTGTCTACTCACAAAATGAATGAAG
388 ATCAATATCA-TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
201071 ATCATTACTAGAATCCATGTTTG
452 ATCATTACTAGAATCCATGTTTG
* * * * *
201094 TCTCATTTCAAGG-ATGAACTTAGACTTCACAAAAATTGTTGGGAAGAAAGCCTTTCTTGTGAAA
1 TCTCATTT-GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* * * ** * * * *
201158 ACAAAGCATCAATGTCGA-GAATTGTTATGAGAAAACTATGACTATGGTGCCCAACACT-AAACA
65 CCAAAGCATCAATATC-ATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAA-TCTGAAA-A
* * * *
201221 AAATAGGGATTAGTATCACTATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
127 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * * *
201286 AACGGTGGATAGAAAAGCTTTTCTTGTGACACTAAAGCTTCAATGCCTTGTATCCTAGA-GAAAG
192 AATGGTGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTA-ATGAAAG
* * * * *
201350 GAATGTGTTCTTAGTTCCCAATCTTTAAAAGAATAGAGACTGTTATGAGAATCAATGCTTGTCAT
255 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCAT
* * *
201415 CTTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAA
320 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
201480 ATTATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAAT-A
385 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
201544 TAGATCATTATTGGAATGCATGTTTG
450 -AGATCATTACTAGAATCCATGTTTG
* * * * * *
201570 TATCATTTTAGGTAGGAACTTGGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * * *
201635 CAAAGCATCAATGTCGTGTATCCTGATGACAAGACTATGATTGTGGTGCCTAA-CAGAAAAAGGA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCTG-AAAA-GA
* * * * *
201699 ATGGGGATTAGTAAGACTATTAATGTTTGTCATATTTAAGAGATAAACTTTGATTCCATCAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
** * * * * *
201764 CAGTGAAAGGAAAAGCTTTT-TT-TGCAGCAACAAAGCATCAATGTCATGTATGCTAATGGAGGG
194 TGGTGGAA-GAAAAGCTTTTCTTGTG-A-CACCAAAGCATCAATGTCATGTATCCTAATGAAAGG
* * * * * *
201827 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCTATAACGAGAATTGATGCTTATCATA
256 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* *
201892 TTTAAGGGATGAATTTTGATTTTTAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAC
321 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
201957 TCATCAATATCATTTATCCTAATGAGAATAATGTGTTTATATTGCCTAATCACAAAATGAATGAA
386 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
*
202022 GATCATTACTAGACTCCATGTTTG
451 GATCATTACTAGAATCCATGTTTG
* **
202046 TC-CTATTTGAGGCATGAA-TTGAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAA
1 TCTC-ATTTGAGGCACGAACTT-AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
* * * *
202109 ACCAAAGCATCAATGTCATGTATGCTTATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAAAG
64 ACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-TGAAAAG
*** * * *
202174 AATGATAATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTTTATCAAAA
128 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * *
202239 ATGGTGAGAGGAAAAG-----CTTGTGACACCAAAGCATCAATGTCTTGTGTCCTAA-AAAAGGG
193 ATGGTG-GAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GG
* * * * * * *
202298 AATGTGTTCTTGGTTTCCAATCTTGAAAAAAATGGACACTATTATGAGAATCAATGCTTGTAATA
256 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * * * * *
202363 TTTAAGGGTTGAATTTTGATTTTAACGAAAATAAGACAAAGAAAAGATTTTCAGGCAGAAGAAAA
321 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
202428 TCATCAATATTATTTATTCTAATGAGGAGAATGTGTTTATATTGCCTAATCACAAAATGAATGAA
386 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
*
202493 GATCATTACTAGAATCTATGTTTG
451 GATCATTACTAGAATCCATGTTTG
* * * * *
202517 TCTCATTTGAAGCACGAACTTAGACTTTAAAAAAATTGGTGCGAAGAAAGCCTTTTTTACGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * * *
202582 CAAAGCATCAATATCGTGTATCATTATAAGAAGACTATGATTGTGGTGCCTAACACTAAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAA-TCTGAAAAGAA
* *
202647 T-GGGATTAGTATGACTATTAATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
130 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* *
202711 GGTGGAAGGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCATGTATGCTAATGGAGAA--A
195 GGTGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT-GA-AAGGA
* * * ** * * * *
202774 ATGTGTTTTTGGTTCCTAGTCTT-AAAAGGCTTGGAGGCTGTAATGAGAATCGATGCTTGTCTTA
257 ATGTGTTCTTGGTTCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * ** * * **
202838 TTTAAGGGATGAATTTTGATTTTAAGGAAAACAGGGTGAAGAAAAGATTTTCGTATAAAA-AAAA
321 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* *
202902 TACATCAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC--AT---AAAATGAATAA
386 T-CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* *
202962 AGATCTTTACTAAAATCCATGTTTG
450 AGATCATTACTAGAATCCATGTTTG
* * * * *
202987 TCTCATTTAAGGCACAAACTTAGACTTTACAAAAATCGGTGAGAAGAAAGCCTTTCATGCGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
*** * * * * *
203052 CAAAATGTCAATATCATGTATCTTTATGAGAAGACTATGTTTATGGTTCCTAATCCCGAATAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAAT-CTGAAAAGAA
* * * * * *
203117 TGAGGATTAGTATGACTATTCATGTTTTTCTTATTT-AGTGGATAAACTTTGATTTTATTAAAAA
130 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAA
* * * * * * *
203181 TGATAGACAAAAAAGCCTTTCTTGTGACACCAAAGCATTAATGTCAT-TGATTCTAATGAAGGGA
194 TGGTGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGT-ATCCTAATGAAAGGA
* * * * * * *
203245 ATGTGTTCTTTGTTCCCAATCTTAAAAAGAAGGGAGACTCTTATGAGAGTCGACGCTTGTCATAT
257 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* ** *
203310 TTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAACGATTTTAATGCAAAATAAAAT
322 TTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * * *
203375 CATCACTATCATTTATCCTAATGAGAAAAATGTGTTTATAATACCTAATCACAAAATGAATGAAG
387 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
*
203440 ATCATTACTAGACTCCATGTTTG
452 ATCATTACTAGAATCCATGTTTG
* * *
203463 TC-CTATTTGAGGCACGAACTAAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAA
1 TCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* * * * * *
203527 CCAAAGCATCAATGTCATTTATGCTTATGAGAAGAGTATGTTTACGGTGCCTAATCCTGAAAAGA
65 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAAT-CTGAAAAGA
** * * *
203592 ATGGTAATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTTTATCAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * *
203657 TGGTGGAAGCAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTGTCCTAAAGAAGGGAA
194 TGGTGGAAG-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* * * *
203722 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGACACTGTTATGAGAATCAATGCTTGTAATATT
258 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* * *
203787 TAAGGGATGAATTTTGATTTTAATGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATC
323 TAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * *
203852 ATCAATATCATTTATTCTATTGAGGGGATTGTGTTTATAGTGCCTAATCCCAAAATGAATGAAG-
388 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
203916 --A-T-C---AATCCATGTTTG
453 TCATTACTAGAATCCATGTTTG
* *
203931 TCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGCGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * *
203996 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGATTGTGGTGCCTAA-CATTAAAAAGA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC--TGAAAAGA
*
204060 ATAGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACAAACTTTGATTCTAT-AAGAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA-AA
* *
204123 ATGGTGGAAGGAAAAGC-TTTCTTTTTGACACCAAAGCATCAATGTCATGTATGCTAAT-AAAGG
193 ATGGTGGAA-GAAAAGCTTTTC-TTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-G
* * *
204186 GAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGACTGTAACGAGAATCGATGCTTGT-AT
255 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCA-
* * ** * * **
204250 TATTTAAGGGATGAATTTTGATTTCAAGGAAAATAGGGTGAAGAATAGATTTTCATATAAAA-AA
319 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
204314 ATTCATCAGTATCATTTATCCTAACGAGAAGAATGTGTTTATAGTGCCCAATCACAAAATGAATA
384 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
*
204379 AAGATCTTTACTAGAATCCATGTTTG
449 AAGATCATTACTAGAATCCATGTTTG
* * * * *
204405 TTTCATTTGAGGCACAAACTTAGATTTTACAAAAATTAGTGAGAAGAAAGCCTTTCTTGCGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
*** * ** * * *
204470 CAAAATGTCAATATCAAGTATTTTTATGAGAGGACTATGTTTATGGTGCCTAATCCT-AAATAAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAAT-CTGAAA-AGA
* * * * * *
204534 ATGAGGATTAGTATGACTATTCATGTTTTTCTTATTTAATG-GATAATCTTTCATTTTATCAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA-GAGACAAACTTTGATTCTATCAAAA
* * * * * *
204598 ACGATGGACAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATTTTTTCTATTGAAAGGA
193 ATGGTGGA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
* * *
204663 ATGTGTTCTTGGTTCCCAATTTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCATAT
257 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* * ** * *
204728 TTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGTAGAGAAGGGATTTTCATGCAAAATAAAAT
322 TTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * *
204793 CATCATTATCATTTATCCTAATGAGAAGAATGTGTTTAT-GATGCCTAATCACAAAATAAATGAA
387 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAAAATGAATGAA
204857 GATCATTACTAGAATCCATGTTTG
451 GATCATTACTAGAATCCATGTTTG
* * * *
204881 -CATCATTTTAGGTAGGAACTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAA
1 TC-TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* * * * *
204945 CCAAAGCATCAATGTCGTGTATCCTTATGAGAAGACTATGATTATGGAGCCTAGTCTTAAAAAGA
65 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-TGAAAAGA
* * *
205010 ATGGGGATTAGTATGGCTATTCATGTTTGTATTATTTAAGAGACAAATTTTGATTCTATCAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
205075 CGATGAAAGGAAAAGTTTTTTTTGTGACACCAAAGCATCAATGTCATGTATGCTAATGGAAGGAA
194 TGGTGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* * * * * * * ** *
205140 TGTGTTTTTGGTTCCCAATCTTAAAAAGATTGGAGGCTATAACGAGAATCGATGTTTGTTTTGTT
258 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* * * * * *
205205 TAAGGGATAAACTTTGATTTTAATGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAAAAAAAA
323 TAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC---AAAAGAAA
* * * * * *
205270 ACCATCAGTGTCATTTTTCCTTATGA-GA-AA------AAT-GTGCCTAATCACAAAATGAATGA
385 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
*
205326 AGATCATTACTAGAATTCATGTTTG
450 AGATCATTACTAGAATCCATGTTTG
* * * * * * * *
205351 TCTCATTTCAGCCACGAACATAGAGTTT--AAAATTTAGTGAGAAGAAAGCCTTTCTTGCAAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * *
205414 CAAAGCATTAATAT-A-GTA-----ATGAAAAGACTACGTTTATGCTAG-CTAATCCTGAAAAGA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGT-GCCTAAT-CTGAAAAGA
* * * *
205471 ATGGGGATTAGTATGACTATTTATGTTTGTCATT-TTTAAGTGACAAACTTTAATTCTATAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAAAA
** * * * * *
205535 ACAGTCGAAAGAAAACCCTTTCTT-TGGACACCAAAGCAAT-AATGTCATATATCCTAATGAAGG
193 ATGGT-GGAAGAAAAGCTTTTCTTGT-GACACCAAAGC-ATCAATGTCATGTATCCTAATGAAAG
* * * * * * * * *
205598 GACTGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGGGACTATTGCAAGAATTGATTCTTGTCTT
255 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCAT
* * * ** * *
205663 ATTTATA-TGATGAACTTTGATTTTATGGAAAATTGGGCAAAGAAAAGATTTTCACGCAAAAGAA
320 ATTTA-AGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
*** *
205727 AATCATTTGTATCATTTATCCTAACT-AGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
384 AATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
205791 -ACTGATCATTACTAAAATCCATGTTTG
448 GA-AGATCATTACTAGAATCCATGTTTG
* * * * *
205818 CCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTACGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
** * ** * * *
205883 CAAAGTGTCAACATTGTGTATCCTTATGAGAAAACTAT-AGTTGTGGTGCCTAATCCTGGAAAGA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGA-TTATGGTGCCTAAT-CTGAAAAGA
* ** * * *
205947 ATGGGGATTAGTATGATTATTCACATTTATCTTATTTAAGAGACAAACTTCGATTTTATCAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * *
206012 CGGTGGAAGGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATGCTAGTGGAGGGAA
194 TGGTGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* * * ** * * * * * * * * * *
206077 TGTGTTTTTAGTTACTGATCTTGAAAAAAATAGAGGCTGTAATGAGGATCAATGATTGTCTTATG
258 TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATT
* * *
206142 TAAGGGATGAATTTTGATTATAAGGAAACAT--GACAAAGAAAAGATTTCCGTGCAAAA-AAAAT
323 TAAGGGATGAATTTTGATTTTAAGGAAA-ATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
** * * *
206204 CATCAGCATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAATGATG
387 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
*
206269 ATCATTTCTAGAATCCATGTTTG
452 ATCATTACTAGAATCCATGTTTG
* * *
206292 TCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAG-CTTATCTTGTGAAA
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT-TCTTGCGAAA
* ** * * *
206356 CCAAAACATCAATATTGTGTATTCTTATGAGAATACTATGGTTATGGTGCCTAATCTTGAAAAGA
65 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATC-TGAAAAGA
* * *
206421 ATGGGGATTAGTATGACTATTTATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATAAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAA
* * * * *
206486 ATGGTGGAACGAAAAGCTTTTCTTGGGATACCAAAGCCTCAATGTCATATATCCTAATAAAAGGA
193 ATGGTGGAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
* * * * * * *
206551 CTGTGTACTTGGTTCCCAATCTTGAAAAGAATGGGGACTGTTGCAAGAATCAATGCTTGTCTTAT
257 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* ** * * * * ** * *
206616 TTATA-AGATGACCTTCGA-TTTAA-AAAAAAAACTGGGTAAAGAAAAGATTTCCACACTACAGA
322 TTA-AGGGATGAATTTTGATTTTAAGGAAAATAA---GGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
206678 AAATCATTAGTATCATTTATCCTAACT-AGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAA
383 AAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
206742 TGAAGATCATTAATAGAATTCGTGTTTG
447 TGAAGATCATTACTAGAATCCATGTTTG
* * *
206770 TCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGGAAGCCTTTCTT-CTAAAA
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC-GAAA
* * * * * * *
206834 CCAAAACGTCAATATTATGTATCTTTATGAGAAAACTATGGTTATGGTGCCTAATCCTAAAAAGA
65 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAAT-CTGAAAAGA
* * * *
206899 ATAGGGATTAGTATGACTA-T--T-TATGTCATATTTAAGAGACAAACTTTGATTCT-GCAAAAA
129 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAA
* * * * *
206959 ATGGTGGAAAGAAAACCTTTTCTTGGGATACCAAAGCATCAATGCCATATATCCTAAT-AAAGGA
193 ATGGTGG-AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
* * * * * *
207023 ACTCTGTACTTGGTTCCCAATCTTGAAAAGAATAGG-GACTGTTGCAAGAATCGATGTTTGTCTT
257 A-TGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGTCAT
* * * * ** * *
207087 ATTTATA-AGATGAACTTTCATTTTGAGGAAAATTGGGCAAAGAAAAGATTTCCACGCTAAAGAA
320 ATTTA-AGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
207151 AATCATCAATATCATTTATTCTAACT-AGAAGAATGTGTTTAAAGTGCCTAATCACAAAATGAAT
384 AATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
207215 GAAGATCATTACTAGAATCCACGTTAG
448 GAAGATCATTACTAGAATCCATGTTTG
* *
207242 TCTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAAC
1 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
** * ** * * *
207307 CAAAGTGTCAATATTATGTATTTTTATGAGAAAACTATGGTTATGGTGCCTAATCCAGAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAAT-CTGAAAAGAA
* * * ** * * * * * *
207372 TGGGGATTATTATAACTATTAACATTTATCTTGTCTGAGAGATAAATTTTGATTCTATCAAAAAT
130 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * * * * * * *
207437 GATGGAAGAAAACCTTTTTTTGCGACCCCAAAGCATCAATGTCA--TATTCTAATGAAGGGACTG
195 GGTGGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
* * * * *
207500 TGTTCTTGGTTCCCAATCTTGAAGAGAATAGG-GACAGTTGCGAGAATTGATGCTTGTCTTATTT
260 TGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGTCATATTT
207564 AAG
324 AAG
207567 AGACAATATT
Statistics
Matches: 5861, Mismatches: 923, Indels: 334
0.82 0.13 0.05
Matches are distributed among these distances:
458 25 0.00
459 2 0.00
460 3 0.00
461 222 0.04
462 11 0.00
466 75 0.01
467 248 0.04
468 196 0.03
469 44 0.01
470 277 0.05
471 573 0.10
472 266 0.05
473 215 0.04
474 453 0.08
475 781 0.13
476 1769 0.30
477 446 0.08
478 223 0.04
479 32 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGCCTAATCTGAAAAGAAT
GGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
GTGGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGT
GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAA
GGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCATGTTTG
Found at i:209584 original size:475 final size:475
Alignment explanation
Indices: 207604--220273 Score: 12647
Period size: 475 Copynumber: 26.9 Consensus size: 475
207594 ATAGACGTAG
* * * *
207604 TCAATATTATGTATCCTTAAGAGAAAACTATGGTTATGGTGCCTAATCCTGAAAAAAATGGGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * *
207669 TAGTATAACTATTAACGTTTGTCTTATTTAAGAGACAAACTGTG-GTCTTATCAAAAATGGTGG-
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-TATCAAAAACGGTGGA
* * * *
207732 AAGAAAACCTTTTCTTGCGACACCAAAGGATCAATGTCATATATTCTATTGAAGGGACTGTGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
*
207797 TTGGTTCCCAATCTTGAAAAGAATGGGGAC-AGTTGCGAGAATCGATGCTTGTCTTATTTATGAG
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTA-TTGCGAGAATCGATGCTTGTCTTATTTATGAG
** * * * * *
207861 ATGAACTTCAATTTTAAGTAAAACTGGGCAAAGAAAAGATTTTCACACAAAAGAAAATCATCAGT
258 ATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGT
*
207926 ATCATTTATCCTAACTAGGAGAATGTTTTTATAGTGCCTAATCACAAAATG-ATGAAGATCATTA
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * *
207990 CTAGAATCCATGATTGCCTCATTTGACGCACGAACCTAGACTTTTA-AAAAATTGGTAGGAA-AA
388 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAA
* *
208053 ATCCTTTCTTGCGAAACCAAAGTA
452 AGCCTTTCTTGCGAAACCAAAGCA
* * * *
208077 TCAATATCGTGTATCCTTATGAGAAGACTATGATTATGGTGTCTAATCTTGAAAAGAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * * *
208142 TAGTATGACTATTCATATTTGTCTTATTCAATAAACAAACTTCGACTT-TATAAAAAACGGT-GA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGA
* * * * * ***
208205 AAGGAAAAGCATTTT-TTGCGACACCAAAGCATGAATGTCATGTATGCTAGT-ATACACAATGTG
129 AA-GAAAA-CCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGA-AGGGAATGTG
* * * * **
208268 -T-TT--TTCACAATCTTGAAAAAAAT-GGAGGCTGTAACGAGAATCGATGCTTGTCTTATTTAT
191 TTCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATTTAT
* * * * *
208328 GGGATGAATTTTGATTTTAAGAAAAA-TAGACCGAAA-AAATGATTTTCAGGC-AAA-AAAATCA
255 GAGATGAACTTTGATTTTAAGAAAAATTAG-GC-AAAGAAAAGATTTTCACGCTAAAGAAAATCA
* *
208389 TCAGTATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGAT
318 TCAGTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * * **
208454 CTTTACTAGAATCAATATTTGTCTCAATTGAGTCACGAACTTAGACTCTACAAAAATTCATGGGA
383 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* * * ***
208519 AGAAAGCGTCTCTTGTGAAACCAAAATG
448 AGAAAGCCTTTCTTGCGAAACCAAAGCA
* ** *
208547 TCAATATCGTGTATTTTTATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* *
208612 TAGTATAACT-TTTCA----TGT-TTA---ATG-GACAAACTTTGATTCTATCAAAAACGGTGGA
65 TAGTATGACTATTT-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * ** * * * *
208667 TAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTATTCTAAAGAAGGGGAATGTGTT
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAA-GGGAATGTGTT
* * * * * *
208732 ATTGGTTCCCAATCTTGAAAAGAAT-GGAGTCTACTT-TGAGAATTGATGCTTGTCATATTTAGG
193 CTTGGTTCCCAATCTTGAAAAGAATAGG-GACTA-TTGCGAGAATCGATGCTTGTCTTATTTATG
* * * * *
208795 GGATGAATTTTGATTTT-AGACAAAATAAGGCAAAGAAAAGA-TTTCGATGCAAAAGAAAAT-AG
256 AGATGAACTTTGATTTTAAGA-AAAATTAGGCAAAGAAAAGATTTTC-ACGCTAAAGAAAATCA-
* * * *** * * * * * *
208857 TCAATATCATTCATTCTAGGGAGGAGAATGTGCTTATACTGCCTAACCAGAAAATGAATAAATAT
318 TCAGTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * *
208922 CATTACT-GAAATCCATGTCTGTCTCATTT-------TAACTTACATTTTACAAAAATTGGTGAG
383 CATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* **
208979 AA-AAGTGCCTTTCTTGCGAAATGAAAGCAA
447 AAGAA-AGCCTTTCTTGCGAAACCAAAGC-A
* * * * *
209009 T-AATAT-AGTCTATCCTAATAAGAGGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGA
1 TCAATATCA-TGTATCCTTATGAGA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * *
209071 CTAGTATGACTATTTATGTTTGT-TATATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGG
64 TTAGTATGACTATTTATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * * *
209135 AAAGAAAACCCTTAT-TTGCGACACCAAAGCATCAATGTCAAATATCCTATTGAAGGGACTGTGT
128 AAAGAAAA-CCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGT
* *** *
209199 TCTTAGTTCCCAATCTTGAAAAGAATAGGGACTATCATGAGAATCGATGATTGTCTTATTTATGA
192 TCTTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGA
* *
209264 GATGAACTTTGATTTTAAGAAAAATTAGGTAAAGAAAAGATTTTCACGCTGAAGAAAATCATCAG
257 GATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAG
* * * * * *
209329 TATCATTTATCCTAACTA-GAGGAATGTGTCTATTGTGCCAAATCCCAAAATAAATGTAGATCAT
322 TATCATTTATCCTAACTAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* *
209393 TACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCGGGAAGA
386 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * *
209458 AAACCTTTCTTACGAAACGAAGGCA
451 AAGCCTTTCTTGCGAAACCAAAGCA
* * * * * *
209483 TTAATATCATCTATCCTAATGAGCAAACTATGTTTACGGTGCCTAGTCTTGAAAAGAAT-GGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * *
209547 TAGTATGACTATTTATGTTTGTCATATTTAAGAGACAAACTTTAATTCTAT-AAAAACTAGTGGA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGGA
* * ** *
209611 AAGAAAACC-TTTCTTTGCGACACCAAAGCATCCATGTCATATATCCTAATGAAAGGTTTATGTT
129 AAGAAAACCTTTTC-TTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTT
* * *
209675 CTTGGTTCCTAATCTTGAAAAGAATAGGGACTATTTCGAGAATCAATGCTTGTCTTATTTATGAG
193 CTTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAG
* * * * * *
209740 ATGAATTTTGATTTTAAGAAAAATTGGGTAAAAAAAAGATTTCCACGCTAAAGAAAATCATTAGT
258 ATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGT
* * ** * * * *
209805 ATCATTTATCCTAAGTAGAAGAATGCATTTATAGTGCTTAATCCCAAAATGAATGTATATCATTA
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * **
209870 TTAAAATCCATGTTTGTCTCATTTGAGGCTCGAACTTA-AGCTTTTTAAAAATTGGTGGGAAGAA
388 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATTGGTGGGAAGAA
209934 AGCCTTTCTTGCGAAACCAAAGCA
452 AGCCTTTCTTGCGAAACCAAAGCA
* * * * *
209958 ACAATATTATGTATCTTTATGAGAAAACTATGGTTATGGTGCCTAAT--T-------AT---GAC
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* **
210011 TA-T-T--C-A--CA--TTTGTCTTATTTAAGAGACAAACTTCAATTCTATCAAAAACGGTGG-A
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * * *
210066 AGAAAACATTTTCTTGCGACACCCAAG-AGTGAATATCATATATCCTAATGAAGGGACTGTGTTC
130 AGAAAACCTTTTCTTGCGACACCAAAGCA-TCAATGTCATATATCCTAATGAAGGGAATGTGTTC
** * * *
210130 TTATTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATTGATGTTTGTCTTATTTAAGAGA
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGA
* * * * * *
210195 TGAACTTTGACTTTAAGAAAAATTCGGCACACAAAAGATTTCCACGCTAAAG-ATATCATCAGTA
259 TGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTA
* * * * * *
210259 TCATTTATCCTAGCTAGGAGATTGTGCTTATAGTGCCTAATCACAAAATGTACGGAGATCATTAC
324 TCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
*** * * *
210324 TAGAATCCATGTTTGTCTCATTTGAGGGTTGAACTCAAACTTTATAAAAATTGGTGGGAAGAAAG
389 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* **
210389 CCTTTCTTGTGAAACCAAAGTG
454 CCTTTCTTGCGAAACCAAAGCA
** * * *
210411 TCAATATTTTGTATCCTTATGAGAAAACTATGGTTATGGTGCCTCATCCTGAAAAGACTGGGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
210476 TAGTATAACT-TTTAATGTTGGCCTTATTTAAGAGACAAACTTTGATCCTATAAAAAACGGTGG-
65 TAGTATGACTATTT-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * *
210539 AAGAAAACCTTTTCTTGCGTCACCAAAGCACCAATGTCATATATTCTAATGAAGAGAGTATGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * * *
210604 TTGGTCCCCAATCTTGAAAAGAATGGGGAC-AGTTGCGAGAATCGATGCTTTTCTTTTTTATGAG
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTA-TTGCGAGAATCGATGCTTGTCTTATTTATGAG
* * * * * *
210668 ATGAACTTCGATTTTAAGGAAAACTGGGCAAAGAAAACATTTTCATGCTAAAGAAAATCATCAGT
258 ATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGT
* * * * *
210733 ATCATTTATCCTAACTAGGAGACTGTGTTTATAGTGCTTTATCCCAAAATGAATGTAGATCATTA
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
210798 CTGGAATCCATGTTTGTCTCGTTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
388 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * **
210863 ACCTTTCTTGTGAAACCAAAGTG
453 GCCTTTCTTGCGAAACCAAAGCA
* * * * * * *
210886 TCAATATCGTGTATCTTTACGAGAAGACTATGTTCATGGTGCCGAACCCTGAATAGAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
*
210951 TAGTATCACT-TTTCATGTTT-TACTT-TTCTAATG-GACAAACTTTGATTCTATCAAAAACGGT
65 TAGTATGACTATTT-ATGTTTGT-CTTATT-TAA-GAGACAAACTTTGATTCTATCAAAAACGGT
* ** *** * * * *
211012 AGG-TAGAAAAGGTTTTCTCATGACACCAAAGCATCAATGTCTTGTATCTTAAGGAAGGGAATGT
126 -GGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGT
* ** * * * **
211076 GTTCTTGGTTCCCAGTCTTGAAAAGAAT-GGAGTTTGTTACGAGAATCGATGCTAGTCAAATTTA
190 GTTCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATTTA
* * * * * * * *
211140 -GGGCATGAATTTTGATTTTAGGGATAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-
254 TGAG-ATGAACTTTGATTTTA-AGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATC
* * * ** * **
211203 AGTCAATATCATTCATTCTAAAGAGGAGAATGTGTTTATTGTGTTTAATCACAAAATGAATGAAG
317 A-TCAGTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * * *
211268 ATCATTACTGGAATCCATGTTTGTCTTAGTTCAGGCACAAACTTACACTTTATAAAAATTGGTGG
381 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** *
211333 GAAGAAAGCCTTTCTTGCGAAATGAAGGCA
446 GAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* * * ** *
211363 TTAATATCATATATACAAATGAGCAAACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * *
211427 TAGTATGACTATTTATGTTTGTCATATTTAAGAGACAAACTTTAATTCTAT-AAAAACCAGTGGA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGA
* * * * **
211491 AAGAAAACCTTTTTTTGCGACACCAAAGCATCCATGTCATATATCCTAAAGAAAGGTTTGTGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * * * *
211556 TTGGTTCCTAATCTTGAAAAGAATAAGGACTCTTGCGAGAATTGATGCTTGTCTTGTTTATGAGA
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGA
* * *
211621 TGAACTTTGATTTTAA-AAAACATTGGGTAAAGAAAAGATTTTCACGCTAAAGAAAATAATCAGT
259 TGAACTTTGATTTTAAGAAAA-ATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGT
* * * * * *
211685 ATCATTTATCCTAGCTAGAAGAATGTGTTTATAGTGCTTAATCCCAAAATGAATGCATATCATTA
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * *
211750 TTAGAATCCATGTTTGTCTCATTTGAGGCTCAAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA
388 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* *
211815 GCCATTCTTACGAAACCAAAGCA
453 GCCTTTCTTGCGAAACCAAAGCA
* * *
211838 TCAATATTATGTATCCTTATGAGAAAACTATGGTTATGGTGCCTAA---T------AAT---GAC
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
211891 TA-T-T--C-A--CA--TTTGCCTTATTCAAGAGACAAACTTCGATTCTACCAAAAACGGTGGAA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * *
211947 A-AAAACCTTTTCTTGCGACACCAAAGCGTCAATGTCATATATCCTAATGAAGGGACTGCGTTCT
130 AGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCT
* * * * * * *
212011 TGTTTCCCATTCTTGAAAAGAAGAGGGACTGTTGCGAGATTTGATGTTTGTCTTATTTATGAGAT
195 TGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGAT
* * *
212076 GAACTTTGACTTTAAGAAAAATTTGGCAAAGAAAAGAGTTTCACGCTAAAG-AAATCATCAGTAT
260 GAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTAT
* * * * * * * *
212140 CATTTATCCTAGCTTGAAGATTGTGTTTATAGTGTCTAATCACAAAATGTATGGAGATCTTTACT
325 CATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
212205 TGAATCCATGTTTATCTCATTTGAGGCTCGAACTCAGACTTTACAAAAATTCGTGGGAAGAAAGC
390 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * *
212270 CTTTCTTGTGAAACCAAAACG
455 CTTTCTTGCGAAACCAAAGCA
* * * * * *
212291 TCAATAGCTTGTATCCTTATGAGAAAACTATGGTTATGGTGCCTCATCCTGAAAAGACTAGGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * *
212356 TAGTATAACTATTAACGTTTGCCTTATTTAAGAGACAAACTTTGATCCTATAAAAAACGGTGG-A
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* ** * *
212420 AGAAAACCTTTTCTTGCGACACCAAAGCACCAATGTCATATATTTTAATGAAGGGAGTATGTTCT
130 AGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCT
* * * * *
212485 TGG-TACCAATCTTGAAAAGAGA-GGGGA-AAGTTGCGAGAACCGATGCTTGTCTTTTTTATGAG
195 TGGTTCCCAATCTTGAAAAGA-ATAGGGACTA-TTGCGAGAATCGATGCTTGTCTTATTTATGAG
* * * * *
212547 ATGAACTTCGATTTTAAGGAAAACTGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATCAGT
258 ATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGT
* * *
212612 ATCATTTATCCTAACTAGGAAAATGTGTTTATAGTGCTTAAT-ACCAAAATGAATGCAGATCATT
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATT
* * * **
212676 ACTGGAATACATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTCAGAA-AA
387 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
** * ***
212740 AAACTTTCTTACGAAACCAAAATG
452 AGCCTTTCTTGCGAAACCAAAGCA
* * * *
212764 TCAATATCATGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAATATAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* *
212829 TTGTATGACT-TTTCATGTTT-TACTT-TTCTAATG-GACAAACTTTGATTCTATCAAAAATGGT
65 TAGTATGACTATTT-ATGTTTGT-CTTATT-TAA-GAGACAAACTTTGATTCTATCAAAAACGGT
* *** * * * *
212890 -GAATGGAAAAGGGTTT-TT-CATGACACCAAAGCATCAATGTCTTGTATCTTAAGGAAGGGAAT
126 GGAA-AGAAAACCTTTTCTTGC--GACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAAT
* * * * * **
212952 GTGTTCTTGGTTCCCAGTCTTGAAAAGAAT-GGAGTCTATTACGAGAATCGATTCTAGTCAAATT
188 GTGTTCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATT
* * * * * * * *
213016 TA-GGGATGAATTTTGATTTTAGGGATAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
252 TATGAGATGAACTTTGATTTTA-AGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAAT
* * ** * *
213080 -AGTCAATATCATTCT-TTCTAAGGAGGAGAATGCGTTTATTGTGCCTAATCACAAAATGAATGA
316 CA-TCAGTATCATT-TATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
213143 AGATCATTACTGGAATCCATGTTTGTCTCAGTTCAGGCACAAACTTACACTTTACAAAAATTGGT
379 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
** * *
213208 GGGAAGAAAGCCTTTCTTGTAAAACGAAGGCA
444 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* * * * * *
213240 TTAATATCATCTATCCTAATTAGCAAACTATGTTTATGGTGCCTAATCCAGAAAATAAT-GGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
213304 TAGTATCACTATCTATGTTTGTCATATTTAAGAGACAAACTTTAATTCTAT-AAAAATCAGTGGA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGA
* * * * ** **
213368 AAGAAAACCTTTTTTTGCTACACTAAAGCATCAATGTCATATATCCTAAAGAAAAGTCTGTGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * **
213433 TTGGTTCCTAATCTTGAAAAGAGTAGGGACTATTGCGAGAATTAATGCTTGTCTTATTTATGAGA
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGA
* * * * *
213498 TGAACTTTGATTTTAAGAAAAATTGGGTAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATA
259 TGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTA
* * * * * * * *
213563 TCACTTATCCTAACTAGAAGAATGTGTTTATAATGCGTAATCCCAAAATGAATGTATATCATTAT
324 TCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* ** * * *
213628 TAGGATCCATGTTTGTCTCATTTGAGGCTTGAACTTAGAGTTTTCAAAAATTAGTGGGAAGAAAG
389 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* * *
213693 TCTTTCTTGCAAAACCGAAGCA
454 CCTTTCTTGCGAAACCAAAGCA
* * * * *
213715 TTAATATTATGTATCCTTATGAGAAAACTATGGGTT-TGGTGCCTAATCTTGAAAAGAATAGGGA
1 TCAATATCATGTATCCTTATGAG-AAACTAT-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* ** * * *
213779 TTAGTATGACTATTCACATTTGTCTTATTTAAGAGGCAAACTTCGATTCTATCAAAAATGGTGG-
64 TTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * *
213843 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGACTGTGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * * * * * *
213908 TTGTTTCCCAATCTTGAAAAGAATGGGGACTGTTGTGAGAATTGATGTTTGTTTTATTTATGAGA
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGA
* * * * * *
213973 TGAACTTTGACTTTAAGGAAAATTAGGGAAAGAAAAGATTTCCACGCTAAAGAAAATCTTTAGTA
259 TGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTA
* * * *
214038 TCATTTATCCTAGCTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGTATGGAGATCATAAC
324 TCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * ** * *
214103 TAAAATCCCTGTTTGTCTCATTTGAGGCTTGAACTTAGACTTTACAAAAATTGATGGGAAAAAAG
389 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
*
214168 CCTTTCTTGCTAAACCAAAGCA
454 CCTTTCTTGCGAAACCAAAGCA
* * * *
214190 TCAATATTATGTATGCTTATGAGAAAACTATGGTTATGGTGCCTTATCCTGAAAA-AACT-GGGA
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGGA
* * * * ** * *
214253 TTAGTATAACTATTAACGTTTGCCTTATTTAAGAGGTAGACTTTGATCCTATCAAAAA-GGTGG-
64 TTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * *
214316 AAGAATACCTTTTCTTGCGGCACCAAAGCACCAATGTCATATATTCTAATGAA-GAAAGTATGTT
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAA-TGTGTT
* *
214380 CTTGGTTCCCAATCTTGAAAAGAATGGGGAC-AGTTACGAGAATCGATGCTTGTCTTATTTATGA
193 CTTGGTTCCCAATCTTGAAAAGAATAGGGACTA-TTGCGAGAATCGATGCTTGTCTTATTTATGA
* * * * *
214444 GATGAACTTCGATTTTAAGGAAAATTGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATCTG
257 GATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAG
* * * *
214509 TATCATTTATCCTAACTAGGAAAATGTGCTTATAGTACTTAATCACAAAATGAATGAAGATCATT
322 TATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
214574 ACTAGAATCCATGTTTGCCTCCTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
387 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * **
214639 AGCTTTTCTTACGAAACCAAAGTG
452 AGCCTTTCTTGCGAAACCAAAGCA
* * * *
214663 TCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGTCTAATCTTGAGAAGAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
214728 TAGTTTGACTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGACTT-TATGAAAAATGGT-GA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGA
* * * * * * * ** * * **
214791 AAGGAAAAGCTTTTTTTGTGACACCAAAGCATGAATGCCTTGTATATTAGTGGAGAAAATGTGTT
129 AA-GAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTT
* ** * * * * *
214856 TTTGGTTCATAATCTTGAAAA-AAAAGGAGGCTGTTACGAGAATCTG-TGCTTGTCTAATTTATG
193 CTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATC-GATGCTTGTCTTATTTATG
* * * ** * **
214919 GGATGAATTTTGATTTTAA-AGAAAATAAACCGAAGAAAAGATTTTCGTG-TAAA-AGAAATCAT
256 AGATGAACTTTGATTTTAAGA-AAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGA-AAATCAT
* * * * * **
214981 CAGTATCATTTATCCTAGCGAGGAGAATATGTTTATAGTGCCTAATTACAAAAGGAAAAAAGATC
319 CAGTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * *
215046 TTTACTAGAATCAATATTTGTCTCAATTGAGTCACGAACTTAGACTTTACAAAAATTAGTGGGAA
384 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* ***
215111 GAAAACCTTTCTTGCGAAACCAAAATG
449 GAAAGCCTTTCTTGCGAAACCAAAGCA
** * * * *
215138 TCAATATTGTGAATCTTTATGAGAAGACTATGTTTATGGGGCCTAA-CCTTGAATAGAAT-GGGA
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGA
215201 TTAGTATGACT-TTTCATGTTT-TACTT-TTCTAATG-GACAAACTTTGATTCTATCAAAAACGG
64 TTAGTATGACTATTT-ATGTTTGT-CTTATT-TAA-GAGACAAACTTTGATTCTATCAAAAACGG
* * ** * * *
215262 TGGATAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTATCCTAAGGAAGGGAATGT
125 TGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGT
* * * * * *
215327 GTTCTTGGTTCCCAGTCTTGAAAAGAAT-GGAGTCTGTTACGAGAATCGATGCTAGTCATATTTA
190 GTTCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATTTA
* * * * * * ** *
215391 -GGGCATGAATTTTGATTTTAAGGATAAATAAGGCTAAGAAAATATTTTCGTGCAAAAGAAAA-C
254 TGAG-ATGAACTTTGATTTTAA-GAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATC
* * * ** ** * * *
215454 AGTTAATATCATTCATTTTAAGGAGGAGAATGTGTTTATTGTGCCTAATTACATAATGAATGAAG
317 A-TCAGTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * *
215519 ATCATTACTGGAATCCATGTTTGTCTCAGTTT-AGGCACAAACTTACACTTTACAAAAATTAGG-
381 ATCATTACTAGAATCCATGTTTGTCTCA-TTTGAGGCACGAACTTAGACTTTACAAAAATT-GGT
* * * *
215582 GGGAAAAAAGACTTTCTTGCGAAACGAAGGCA
444 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* * * ** * *
215614 TTAATATCATCTATCCTAATGAGCCGACTATGTTTAGGGTGCCTAATCTTGAAAAGAAT-GGGAT
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
215678 TACTATGACTATTTATGTTTGTCATATTTAAGAGACAAACTTTAATTTTAT-AAAAACTGGTGGT
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGGA
* * * **
215742 AAGAAAACCTTTTTTTGCGACACCAAAGCATCCATGTCATATATCCTAATGAAAGGTTTGTGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * * *
215807 TTGGTTTCCAATCTTGAAAAGAATAAGGAC-ATTGTGAGAATCGATGCTTGTCTTATTTATAAGA
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGA
* * * * * *
215871 TAAACTTCGATTTTAAGAAAAATTGGGTAAAGAAAAGATTTCCACACTAAAGAAAATCATCAGTA
259 TGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTA
* * * * * * *
215936 TCATTTATACTAACTAGAAGAATGTGTTTATAGTGCTTAATCCCAAAATGAATGTATATCATTAT
324 TCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
216001 TAGAATCCATATTTGTCTCATTTGAGGCTCGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAG
389 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
216066 CCTTTCTTGCGAAACCAAAGCA
454 CCTTTCTTGCGAAACCAAAGCA
* * * *
216088 TCAATATTATGTATCCTTATGAGAAAACTACGGTTATGGTGCCTAAT--T-------AT---GAC
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* *
216141 TA-T-T--C-A--CA--TTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAACGGTGG-
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGGTGGA
* ** * * * *
216196 AGGAAAACCTTTTCTTGCGACATTAAAGCGTCGATGTCGTATATCCTAATGAAGGGACTGTGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * * * * *
216261 TTGTTTCCCAATCTTGAAAAGAACAGGGACTGTTGCGAGAATTGATGTTTGTCTTATTTCTGAGA
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGA
* * **
216326 TGAACTTTTACTTTAAGAAAAATTCTGCAAAGAAAAG-TTTTCCACGCTAAAG-AAATCATCAGT
259 TGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTT-CACGCTAAAGAAAATCATCAGT
* * * * *
216389 ATCATTTATCCTAGCTAGGAGATTGTGTTTATACTGCCTAATCACAAAATGTATGGAGATCATTA
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
** * *
216454 CTAGAATCCATG-TTGTCTCATTTGAGGGTCGAACTCAGACTTTAAAAAAATTGGTGGGAAGAAA
388 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
*
216518 GCCTTTCTTGCGAAACCAAAGCG
453 GCCTTTCTTGCGAAACCAAAGCA
* ** * * * *
216541 TCTATATTTTGTATCCTTATGCGAAAACTATAG-TTATGGTGCCTCATCCTGAAAAGATTAGGGA
1 TCAATATCATGTATCCTTATGAG-AAACTAT-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * ** * * *
216605 TTAGTATAACTATTAACATTTGCCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAGTGG-
64 TTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * *
216669 ATGAAAACCTTTTCTTGCGATACCAAAGCACCAATGTCATATATTCTAATGAAGGGAGTATGTTC
129 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTC
* * * *
216734 TTGGTTCCCAATCTTGAAAAGATTAGGGA-TAGTTACGACAATCAATGCTTGTCTTATTTATGAG
194 TTGGTTCCCAATCTTGAAAAGAATAGGGACTA-TTGCGAGAATCGATGCTTGTCTTATTTATGAG
* * * * *
216798 ATGAACTTCGATTTTAAGGAAAACTAGGCAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAGT
258 ATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGT
** *
216863 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGGTTAATCACAAAATGAATGAAGATCATTT
323 ATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
216928 CTCGAATCCATGTTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
388 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * **
216993 GCTTTTCTTCCAAAACGAAAGTG
453 GCCTTTCTTGCGAAACCAAAGCA
* * * * *
217016 TCAATATCATGTATCCTTATGAGAAGACTATGATTATGGTGTCTAATCTTGAGAAGAATGAGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
217081 TAGTATGACTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGACAT-TATGAAAAACGGT-GA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGA
* * * * * * * *
217144 AAGGAAAAGCTTTTTTTGCGACACCAAAGCATGAATGTCATGTATGCTAGTGGAGAGAATGTGTT
129 AA-GAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTT
* * ** * * * **
217209 TTTTGTTCGTAATCTTGAAAAAAAT-GGAGGCTGTAACGAGAATCGATGCTTGTCTTATTTATGA
193 CTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATTTATGA
* * * * *** *
217273 AATGAATTTTGATTTTAAGAAAAA-TAGATCGAAGAAAAGATTTTTGTGC-AAAAAAAATCATCA
257 GATGAACTTTGATTTTAAGAAAAATTAG-GCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCA
* * * * *
217336 GTATCATTTATCCTAGCGAGGAGAATGTGTTTATAGTGCCCAATCACAAAATGAATAAAGATCTT
321 GTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
** * * * *
217401 TACTAGAATTAATATTTGTCAT-AATTGAGTCACGAACTTAGACTTAACAAAAATTGGTGGGAAG
386 TACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG
* ***
217465 AAAGCCTTTCTTGCAAAACCAAAATG
450 AAAGCCTTTCTTGCGAAACCAAAGCA
* * * *
217491 TCAATATCATGTTTCTTTATGAGAAGACTATGTTTATGGCGCCTAATCCTGAATAGAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
*
217556 TAGTATGACT-TTTCATGTTT-TACTTTTTTAATG-GACAAACTTTGATTCTATCAAAAACGGTG
65 TAGTATGACTATTT-ATGTTTGT-CTTATTTAA-GAGACAAACTTTGATTCTATCAAAAACGGTG
* * ** * * *
217618 GATAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTATATTCTAAGGAAGGGAATGTGT
127 GAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGT
* * * * * * *
217683 TCTTGGTTCCTAGTCTTGAAAAGAAT-GGAGTCTATTACGAGAATCGATACTTGTCATATTTAAG
192 TCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATTTATG
* * * * * * * * **
217747 GGATAAATTTTGATTTTAGGGAAAATAAGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATTGTCA
256 AGATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCA
* * * * * *
217811 ATGTGATTCATTCTAA-TGAGGAGAATGTGTTTGTCA-TGCCTAATCACAAAATGAAAT-AAGAT
321 GTATCATTTATCCTAACT-AGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATG-AATGAAGAT
* * * * *
217873 CATTACTGGAATCCATGTTTGTCTTATTTCAGGCACAAACTTACACTTTACAAAAATTGGTGGGA
383 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* *
217938 AGAAAGGCTTTCTTGCGAAA-CGAAGCCA
448 AGAAAGCCTTTCTTGCGAAACCAAAG-CA
* * ** * * * ** *
217966 TTAACATCATCCATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAAAAAAGGGAC
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
218031 TAGTATGACTATTGATGTTTGTCATATTAAAGAGACAAACTTTTATTCTAT--AAAATGGTGGAA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * *
218094 AGAAAACCTTTTTTTTTTTGCGACACCAAAGCATCAAAGTCATATATCCTAATGATA-AGACTGT
130 AGAAAACC----TTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGA-AGGGAATGT
* *
218158 GTTCTTGGTTCCCAATCTTGAACAGAATAGGGACTATTGTGAGAATCGATGCTTGTCTTATTTAT
190 GTTCTTGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTAT
* * * *
218223 GGGATGAACTTTGATTTTAAGAAAAATTGGGTAAAGAAAAGATTTCCACGCTAAAGAAAATCATC
255 GAGATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATC
* * * * * * *
218288 AGTATCATTCATCCTAACTA-GATAAGTATGTTTATAGTGCTTAATCCCAAAATGAATGTATATC
320 AGTATCATTTATCCTAACTAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* *
218352 ATTATTAGAATCCATGTTTGTCTCATTTGA-GTATCGAACTTAGACTTTACAAAAATTGGTGGGA
384 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CGAACTTAGACTTTACAAAAATTGGTGGGA
*
218416 AGAAAGCCTTTCTTGCCAAACCAAAGCA
448 AGAAAGCCTTTCTTGCGAAACCAAAGCA
* * * **
218444 TCAATATTATGTATCCTTATGAGGAAACTGTGGTTATGGTGCCTAATCCTGAAAAGAATAAGGAT
1 TCAATATCATGTATCCTTATGA-GAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* ** *
218509 TAGTATGACTATTCACATTTGTCTTATTTAAGAGACAAACTTCGATTCTATCAAAAACGGTGG-A
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* ** *
218573 AGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATAAAGGGGCTGTGTTCC
130 AGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCT
* * * *
218638 TGTTTCCCAATCTTGAAAAGAATAGGGACTGTTGTGAGAATCGATGTTTGTCTTATTTATGAGAT
195 TGGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGAT
* * * *
218703 GAACTTTGACTTTAAGGAAAATTAGGCAAAGAAAAGATTTCCACGCTAAAGAAAATCATCAATAT
260 GAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTAT
* * * * *
218768 GATTTATCCTAGCTAGGAGAATGTGTTTATAGTGCATAATCACAAAATGTATGGAGATCATTACT
325 CATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
218833 AGAATCCATGTTTGTCTCATTTGAGGCTCGAGCTTAGACTTTACAAAAATTGGTGGGAATAAAGC
390 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
** *
218898 CTTTCTTGTAAAACCAAAGCG
455 CTTTCTTGCGAAACCAAAGCA
* *
218919 TCAATATTATGTATCCTTATGAGAAAACTATGGTTATGGTGCCTAATCCT-AGAAAGAATGGGGA
1 TCAATATCATGTATCCTTATGAG-AAACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGA
* * *
218983 TTAGTATAACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGA-TCTTATCAAAAACGGAGG
64 TTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-TATCAAAAACGGTGG
* * * * * *
219047 -AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGACGTATATTCTAAGGAAGGGAGTATGTT
128 AAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTT
* * * *
219111 CTTGGTTCCTAATCTTGAAAAGAATGGGGA-TAGTTGCGAGAATCGATGCTCGTCTTATTTTTGA
193 CTTGGTTCCCAATCTTGAAAAGAATAGGGACTA-TTGCGAGAATCGATGCTTGTCTTATTTATGA
** * * * *** *
219175 GATGAACTTCAATTTTAAGGAAAACTGGGCAAAGAAAAGATTTTCGTACTAAAGAAAATCATTAG
257 GATGAACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAG
* *
219240 TATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAGTGAAGATCATT
322 TATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* *
219305 ACTAGAATCCATGTTTGCCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
387 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * **
219370 A-CGTTTCTTGTGAAACCAAAGTG
452 AGCCTTTCTTGCGAAACCAAAGCA
* * ** * * *
219393 TCAACATCATGTATCCTTATGAGAAGACTATGATTATGGTGTTTTATCCTGAGAAGAATAGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* ** * *
219458 T-GTATGACTATTCACATTTGTCTTATTTAAGAGACAAACTTTTACTT-TTTCAAAAACGGT-GA
65 TAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGA
* * * * * * * * *
219520 AAGGAAAAGCATTTT-TTGCGACACCAAAGCATGACTGTCTTGTATGCTAGTGGAGAGAATGTGT
129 AA-GAAAA-CCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGT
* * * * * * ** *
219584 TTTTGGTTCACAGTCTTGAAAAAAAT-GGAGGCTGTAACGAGAATCGATGCTTGCCTTATTTATG
192 TCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGAGAATCGATGCTTGTCTTATTTATG
* * * * * * **
219648 GGATGAATTTTGATTTTGAGGAAAA-TAGACCGAAGAAAAGATTTTCGTG-TAAA-AAAATCATC
256 AGATGAACTTTGATTTTAAGAAAAATTAG-GCAAAGAAAAGATTTTCACGCTAAAGAAAATCATC
* * *
219710 AGTATCATTTATCCTAA-TGAGGAGAATATGTTTATTGTGCCTAATCACAAAATGAATAAAGATC
320 AGTATCATTTATCCTAACT-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * * *
219774 TTTACTAGAATCAATATTTATCTCAGTTGAGTCATGAACTTAGACTTTACAAAAATTGGT-GGAA
384 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* *
219838 GAAAGCCTTTCTTGCAAAACAAAATG--
449 GAAAGCCTTTCTTGCGAAACCAAA-GCA
* * * *
219864 TCGATATCGTGTAT-CTTATGATAAGACTATGTTTATGGTGCCTAATCCTGAATAGAATGGGGAT
1 TCAATATCATGTATCCTTATGAGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
*
219928 TAGTATGACT-TTTCATGTTT-TACTTATTTAATG-GACAAACTTTGATTCTATCAAAAACAGTG
65 TAGTATGACTATTT-ATGTTTGT-CTTATTTAA-GAGACAAACTTTGATTCTATCAAAAACGGTG
* ** * * * * *
219990 GACAA-AAAAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTGTCCTAAAGAAGGGAATATG
127 GA-AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTG
* * * * *
220054 -TCTTGGTTCCCAATCTTGAAAAGAAT-GGAGTCTGTTAC-AGGAATCAATGCTTGTCATATTTA
191 TTCTTGGTTCCCAATCTTGAAAAGAATAGG-GACTATTGCGA-GAATCGATGCTTGTCTTATTTA
* * * * * * * * *
220116 GGTGATGAA-TTTAGATTTTAGGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCG
254 TGAGATGAACTTT-GATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCA
* * * * ** * *
220180 TTAATATCATTCATTCTAAGGAGGAGAATGTGTTTATAGTGTCTACTCACAAAATGAATGAAGAT
318 TCAGTATCATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* *
220245 CATTACTGGAATCCATATTTGTCTCATTT
383 CATTACTAGAATCCATGTTTGTCTCATTT
220274 CATGCACAAA
Statistics
Matches: 10109, Mismatches: 1754, Indels: 669
0.81 0.14 0.05
Matches are distributed among these distances:
453 476 0.05
454 498 0.05
455 154 0.02
456 19 0.00
457 2 0.00
458 1 0.00
459 3 0.00
460 23 0.00
461 146 0.01
462 19 0.00
463 7 0.00
464 14 0.00
465 29 0.00
466 88 0.01
467 14 0.00
468 321 0.03
469 149 0.01
470 314 0.03
471 112 0.01
472 244 0.02
473 926 0.09
474 1352 0.13
475 3558 0.35
476 1003 0.10
477 383 0.04
478 228 0.02
479 17 0.00
480 9 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
TCAATATCATGTATCCTTATGAGAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
AGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
GAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCTT
GGTTCCCAATCTTGAAAAGAATAGGGACTATTGCGAGAATCGATGCTTGTCTTATTTATGAGATG
AACTTTGATTTTAAGAAAAATTAGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATCAGTATC
ATTTATCCTAACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
TTTCTTGCGAAACCAAAGCA
Found at i:220664 original size:428 final size:428
Alignment explanation
Indices: 219867--220701 Score: 1010
Period size: 428 Copynumber: 2.0 Consensus size: 428
219857 CAAAATGTCG
* * * * * *
219867 ATATCGTGTATCTTATGATAAGACTATGTTTATGGTGCCTAATCCTGAATAGAATGGGGATTAGT
1 ATATCGTCTATCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGT
* * *
219932 ATGACTTTTCATGTTTTACTTATTTAATGGACAAACTTTGATTCTATCAAAAACAGTGGACAAAA
66 ATGACTCTTCATGTTTTACATATTTAATGGACAAACTTTGATACTATCAAAAACAGTGGACAAAA
* * *
219997 AAGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTGTCCTAAAGAAGGGAATATGTCTTGGTT
131 AAGCTTTTCTTATGACACCAAAGCATCAATGTCATATATCCTAAAGAAGGGAATATGTCTTGGTT
* * * * **
220062 CCCAATCTTGAAAAGAATGGAGTCTGTTACAGGAATCAATGCTTGTCATATTTAGGTGATGAATT
196 CCCAATCTTGAAAAGAACGGAGACTATTACAAGAATCAATGCTTGTCATATTTAGGAAATGAATT
* * * *
220127 TAGATTTTAGGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTTAATATCATTC
261 TAGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTC
* * * * * * *
220192 ATTCTAAGGAGGAGAATGTGTTTATAGTGTCTACTCACAAAATGAATGAAGATCATTACTGGAAT
326 ATCCTAACGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
220257 CCATATTTGTCTCATTTCATGCACAAACAAAAGCATTA
391 CCATATTTGTCTCATTTCATGCACAAACAAAAGCATTA
* *
220295 ATATCGTCTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAAT-AGGATTTG
1 ATATCGTCTAT-CTAATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAG
*
220359 TATGACTACTT-ATGTTTGT-CATATTTCA-GAGACAAACTTTGATACTAT-AATAAACAGTGGA
65 TATGACT-CTTCATGTTT-TACATATTTAATG-GACAAACTTTGATACTATCAA-AAACAGTGGA
* *
220420 -AAGAAAA-CATTTT-TTGA-GACACCAAAGCATCAATGTCATATATCCTAATGAAGGGACTATG
126 CAA-AAAAGC-TTTTCTT-ATGACACCAAAGCATCAATGTCATATATCCTAAAGAAGGGAATATG
* * * * * **
220481 TTCTTGGTTCCCAATCTTGAAAAGAACGGGGACTATTGCAAGAATCGATGCTTGTCTTTTTTTTG
188 -TCTTGGTTCCCAATCTTGAAAAGAACGGAGACTATTACAAGAATCAATGCTTGTCATATTTAGG
* * *
220546 AAATGAACTTT-GATTTTAAGAAAAAT-TGAGTAAAGAAAAGATTTCCATGCTAAAGAAAATCAT
252 AAATGAA-TTTAGATTTTAAGAAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * *
220609 CAATGTCATTTATCCTAACTAGAAGAATATGTTTATTA-TGCCTAATCCCAAAATGAATGTAGAT
315 CAATATCATTCATCCTAACGAGAAGAATATGTTTA-TAGTGCCTAATCACAAAATGAATGAAGAT
* * *
220673 CATTACTATAGTCCATGTTTGTCTCATTT
379 CATTACTAGAATCCATATTTGTCTCATTT
220702 GAGGCATCAA
Statistics
Matches: 343, Mismatches: 52, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
427 48 0.14
428 248 0.72
429 47 0.14
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (428 bp):
ATATCGTCTATCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGT
ATGACTCTTCATGTTTTACATATTTAATGGACAAACTTTGATACTATCAAAAACAGTGGACAAAA
AAGCTTTTCTTATGACACCAAAGCATCAATGTCATATATCCTAAAGAAGGGAATATGTCTTGGTT
CCCAATCTTGAAAAGAACGGAGACTATTACAAGAATCAATGCTTGTCATATTTAGGAAATGAATT
TAGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTC
ATCCTAACGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCATATTTGTCTCATTTCATGCACAAACAAAAGCATTA
Found at i:221677 original size:476 final size:476
Alignment explanation
Indices: 220281--223060 Score: 3244
Period size: 476 Copynumber: 5.9 Consensus size: 476
220271 TTTCATGCAC
* * * * *
220281 AAACAAAAGCATTAATATCGTCTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAA
1 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * * *
220346 AGAATA-GGATTTGTATGACTACTT-ATGTTTGTCATATTTCAGAGACAAACTTTGATACTAT-A
66 AGAATAGGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
220408 ATAAACAGTGGAAAGAAAA-CATTTT-TTGAGACACCAAAGCATCAATGTCATATATCCTAATGA
130 A-AAACGGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGA
* * * * * ***
220471 AGGGACTATGTTCTTGGTTCCCAATCTTGAAAAGAACGGGGACTATTGCAAGAATCGATGCTTGT
193 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
** * * * * *
220536 CTT-TTT-TTTGAAATGAACTTTGATTTT-AAGAAAAATTGAGTAAAGAAAAGATTTCCATGCTA
258 CTTATTTAAATG--ATGAATTTTGATTTTAAAG-AAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * * * *
220598 AAGAAAATCATCAATGTCATTTATCCTAACT-AGAAGAATATGTTTATTATGCCTAATCCCAAAA
320 AAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATATGTTTATAATACCTAATCACAAAA
* * *
220662 TGAATGTAGATCATTACTATAGTCCATGTTTGTCTCATTTGAGGCATC-AACTTAGACTTTACAA
384 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CGAACTTAGACTTTACAA
* *
220726 AAATTGGTAGGAAGAAAGCCTTTCTTGGG
448 AAATTGGTGGGAAGAAAGCCTTTCTTGCG
* * * * * *
220755 AAGCCAAAGCGTCAATATCGTGTACCCTTATGAGAAAACTATGATTATGGTGCCTAATCCTGAAA
1 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * *
220820 AGAAT-GGAGATTAGTATGACTATTCACGTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCA
66 AGAATAGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
220884 AAAACGGTGG-AAGAAAACCATTTCTTGCGACACCAAAGCATCAATGTCATATTTCCTAATGAAG
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAG
* * * *
220948 GGACTATGTTCTTGGTTCCCAATCTTGAAAA-AATGGGGACTGTTGTGAGAATCGATGCTTGTCT
195 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCT
* ** * ** *
221012 TATTTATGA-GATGAACCTTGATTTTAAGGAAAATTA-GGCAAAGAAAAGATTTCCACACTAAAG
260 TATTTA-AATGATGAATTTTGATTTTAAAGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * * * *
221075 AAAATCATTAGTATCACTTATCCTAGCT-AGGAGAATGTGTTTATAATGCCTAATCACAATATGA
323 AAAATCATCAATATCATTTATCCTA-ATGAGGAGAATATGTTTATAATACCTAATCACAAAATGA
* * * * *
221139 GTGAAGATTATTACTGGAATCTATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAAT
387 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * *
221204 CAGTGGGAAGAAGGCCTTTCTTGCA
452 TGGTGGGAAGAAAGCCTTTCTTGCG
** * * * * *
221229 AAACCAAAGTTTAAATATTGTATATCTTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAT
1 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * *
221294 AGAATAGGGATTAGTATGACT-TGTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTATAA
66 AGAATAGGGATTAGTATGACTAT-TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
221358 AAAATGGTGGACAGAAAAGCGTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAG
* * * * *
221423 GGATTGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATTCTTATCA
195 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCT
221488 TATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-AAATAGATTTCCATGCAAAAGA
260 TATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAA-AGATTTCCATGCAAAAGA
* * * * * *
221552 AAATCATCAATCTC-TTCTATTCTAATGAGGAGAATTTGTTTATAGTATCTACTCACAAAATGAA
324 AAATCATCAATATCATT-TATCCTAATGAGGAGAATATGTTTATAATACCTAATCACAAAATGAA
* * *
221616 TGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTCAAGG-ATGAACTTAGACTTTACAAAAAT
388 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTACAAAAAT
* *
221680 TGTTGGGAAGAAAGCCTTTCTTGCA
452 TGGTGGGAAGAAAGCCTTTCTTGCG
* *
221705 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG-ATATTGATGCCTAATCTTGAA
1 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA-TGGTGCCTAATCTTGAA
* **
221769 TAGAATAAAGATTAGTATGAC---T-A--TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
65 AAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
221828 ATAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCTTGTACCCTAATA-AA
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-AGAA
* * * ** * *
221892 GGGGATGTGTTTTTGGTTCACAATC-CAACAAAGAATGGAGGCTGTAATGAGAATCGATGCTTGT
194 GGGAATGTGTTCTTGGTTCCCAATCTTGA-AAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* * * *
221956 CTTATTTAAGA-GATGTATTTTGATTTTAAAGAAAATAGGGCAAAAAAAAGATTTTCGTGCAAAA
258 CTTATTTAA-ATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
*
222020 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATACGTTTATAATACCTAATCACAAAATGA
322 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAATACCTAATCACAAAATGA
* * *
222085 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAAGCACGAACTGAGACTTTACAAAAAT
387 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
**
222150 TGGTGCAAAGAAAGCCTTTCTTGCG
452 TGGTGGGAAGAAAGCCTTTCTTGCG
* ** *
222175 AAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGATTT-TCATGGCTAATCTTGAA
1 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG-TTTATGGTGCCTAATCTTGAA
** *
222239 AAGAATAGGGATTAGTATGACTATTCACATTTATCTTATTTAAGAGACAAACTTTGATTCTATCA
65 AAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
222304 ATAACGGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATTAGTGTCATGTACCCTAATA-AA
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-AGAA
* * * ** *
222368 GGGAATGTGTTTTTGGTTCCGAATCTTGCAAAGAATGGAGGTTGTAATGAGAATCGATGCTTGTC
194 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTC
** * * *
222433 TTATTTAAGGGATGTATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
259 TTATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * ** * *
222498 AAATCATCAATATCATTTATCCTAACGAGGTGAATGCGTTTATAATGCCTAATCACAAAATGAAA
324 AAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAATACCTAATCACAAAATGAAT
* * * *
222563 GAAGATCATTGCTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGATTTTACAATAATTG
389 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
*
222628 GTGGGATGAAAGCCTTTCTTGCG
454 GTGGGAAGAAAGCCTTTCTTGCG
** * *
222651 AAACCAAAGTGTCAATATCTTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
1 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * *
222716 AGAATAGGGATTAGTATGACTATTCATGTTTGTCTTCTATAATAGACAAACTTTGATTGC-AGT-
66 AGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-CTA-TC
* * * * * * *
222779 AAAAACGGTGGATAGAAAAGCTTTTCTTACGACCCCAAAGCATTAATGTC-TCGCATCTTAATGA
129 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT-GTATCCTAAAGA
* * *
222843 AAGGAATGTGTTCTTGGTTCCTAATTTTG-AAAGAAATGGAGACTGTTATGAGAATCGATGCTTG
193 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG-AATGGAGACTGTTATGAGAATCGATGCTTG
* * * * *
222907 T-TATATTT-AATGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGCAAAGATTTTCACGCAA
257 TCT-TATTTAAAT-GATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * *
222970 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAA-CTGCAAAA
320 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAATACCTAATC-ACAAAA
* *
223034 TGATTGAAGATCCTTACTAGAATCCAT
384 TGAATGAAGATCATTACTAGAATCCAT
223061 TATGTTCTTT
Statistics
Matches: 1995, Mismatches: 262, Indels: 96
0.85 0.11 0.04
Matches are distributed among these distances:
469 3 0.00
470 400 0.20
471 7 0.00
472 2 0.00
473 4 0.00
474 387 0.19
475 226 0.11
476 961 0.48
477 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
AGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGG
GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTT
ATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAATACCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTCTTGCG
Found at i:222386 original size:946 final size:942
Alignment explanation
Indices: 220271--223060 Score: 3325
Period size: 946 Copynumber: 2.9 Consensus size: 942
220261 ATTTGTCTCA
* * * * *
220271 TTTCATGCACAAACAAAAGCATTAATATCGTCTATCCTAATGAGAAGACAATGTTTATGGTGCCT
1 TTTCTTGCA-AAACCAAAGCATAAATATCGTC-ATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * *
220336 AATCTTGAAAAGAATA-GGATTTGTATGACTACTT-ATGTTTGTCATATTTCAGAGACAAACTTT
64 AATCTTGAAAAGAATAGGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
220399 GATACTATAATAAACAGTGGAAAGAAAA-CATTTT-TTGAGACACCAAAGCATCAATGTCATATA
128 GATTCTATAAT-AACGGTGGAAAGAAAAGC-TTTTCTTGTGACACCAAAGCATCAATGTCATGTA
* * * * * * * ***
220462 TCCTAATGAAGGGACTATGTTCTTGGTTCCCAATCTTGAAAAGAACGGGGACTATTGCAAGAATC
191 TCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC
*** * * * *
220527 GATGCTTGTCT-TTTTTTTGAAATGAACTTTGATTTT-AAGAAAAATTGAGTAAAGAAAAGATTT
256 GATGCTTGTCTATTTAAATG--ATGAATTTTGATTTTAAAG-AAAATAGGGCAAAGAAAAGATTT
* * *
220590 CCATGCTAAAGAAAATCATCAATGTCATTTATCCTAACT-AGAAGAATATGTTTAT-TATGCCTA
318 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATATGTTTATATAT--CTA
* * * * *
220653 ATCCCAAAATGAATGTAGATCATTACTATAGTCCATGTTTGTCTCATTTGAGGCATCAACTTAGA
380 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * *
220718 CTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGGGAAGCCAAAGCGTCAATATCGTGTACCCT
445 CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCT
* *
220783 TATGAGAAAACTATGATTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACTATTCACG
510 TATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATAGAGATTAGTATGAC--TTCA-G
* * * *
220848 TTTGTCTTATTTAAGAGATAAACTTTGATTCTACCAAAAACGGTGG-AAGAAAACCATTTCTTGC
572 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
* * * * * * *
220912 GACACCAAAGCATCAATGTCATATTTCCTAATGAAGGGACTATGTTCTTGGTTCCCAATCTTGAA
637 GACACCAAAGCATTAATGTCTTGTATCCTAATAAAGGGA-TGTGTTCTTGGTT-CCAATC-TAAA
* * **
220977 AA-AATGG-GGACTGTTGTGAGAATCGATGCTTGTCTTATTTATGAGATGAACCTTGATTTTAAG
699 AAGAATGGAGG-CTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAATTTTGATTTTAAG
* * * * * * *
221040 GAAAATTA-GGCAAAGAAAAGATTTCCACACTAAAGAAAATCATTAGTATCACTTATCCTAGCT-
763 GAAAA-TAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTA-ATG
* * * * * *
221103 AGGAGAATGTGTTTATAATGCCTAATCACAATATGAGTGAAGATTATTACTGGAATCTATGTTTG
826 AGGAGAATATGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * ** *
221168 TCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCAGTGGGAAGAAGGCC
891 TCTCATTTGAAGCACAAACTGAGACTTTACAAAAATCAGTGCAAAGAAAGCC
** * * *
221220 TTTCTTGCAAAACCAAAGTTTAAATATTGTATATCTTTATGAGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCAAAACCAAAGCATAAATATCGT-CATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* *
221285 ATCTTGAATAGAATAGGGATTAGTATGACT-TGTCATGTTTGTCTTATTTAAGGGACAAACTTTG
65 ATCTTGAAAAGAATAGGGATTAGTATGACTAT-TCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * *
221349 ATTTTATAAAAAATGGTGGACAGAAAAGCGTTTCTTGTGACACCAAAGCATCAATGTCTTGTATC
129 ATTCTAT-AATAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
*
221414 CTAA-AGAAGGGATTGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCG
193 CTAATA-AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCG
* *
221478 ATTCTTATCATATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-AAATAGATTTCC
257 ATGCTTGTC-TATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAA-AGATTTCC
* * * *
221542 ATGCAAAAGAAAATCATCAATCTC-TTCTATTCTAATGAGGAGAATTTGTTTATAGTATCTACTC
320 ATGCAAAAGAAAATCATCAATATCATT-TATCCTAATGAGGAGAATATGTTTATA-TATCTAATC
* *
221606 ACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTCAAGG-ATGAACTTAGACT
383 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-GAGGCATGAACTTAGACT
* * *
221670 TTACAAAAATTGTTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTA
447 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTA
* * * *
221735 TGAGAAGACTATGA-TATTGATGCCTAATCTTGAATAGAATAAAGATTAGTATGAC-T-A-TTTG
512 TGAGAAGACTATGATTA-TGGTGCCTAATCCTGAAAAGAATAGAGATTAGTATGACTTCAGTTTG
*
221796 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
576 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
221861 CCAAAGCATTAATGTCTTGTACCCTAATAAAGGGGATGTGTTTTTGGTTCACAATCCAACAAAGA
641 CCAAAGCATTAATGTCTTGTATCCTAATAAA-GGGATGTGTTCTTGGTTC-CAATCTAA-AAAGA
* * *
221926 ATGGAGGCTGTAATGAGAATCGATGCTTGTCTTATTTAAGAGATGTATTTTGATTTTAAAGAAAA
703 ATGGAGGCTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAATTTTGATTTTAAGGAAAA
* **
221991 TAGGGCAAAAAAAAGATTTTCGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
768 TAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
222056 TACGTTTATAATACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATT
833 TATGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* **
222121 TGAAGCACGAACTGAGACTTTACAAAAATTGGTGCAAAGAAAGCC
898 TGAAGCACAAACTGAGACTTTACAAAAATCAGTGCAAAGAAAGCC
* * ** *
222166 TTTCTTGCGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGATTT-TCATGGCT
1 TTTCTTGCAAAACCAAAGCATAAATATCGT-CATCCTTATGAGAAGACTATG-TTTATGGTGCCT
** *
222230 AATCTTGAAAAGAATAGGGATTAGTATGACTATTCACATTTATCTTATTTAAGAGACAAACTTTG
64 AATCTTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
222295 ATTCTATCAATAACGGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATTAGTGTCATGTACC
129 ATTCTAT-AATAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
* * * * *
222360 CTAATAAAGGGAATGTGTTTTTGGTTCCGAATCTTGCAAAGAATGGAGGTTGTAATGAGAATCGA
193 CTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGA
** * * *
222425 TGCTTGTCTTATTTAAGGGATGTATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
258 TGCTTGTC-TATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCAT
* * **
222490 GCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGTGAATGCGTTTATA-ATGCCTAATCAC
322 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATATAT--CTAATCAC
* * * * *
222554 AAAATGAAAGAAGATCATTGCTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGATTTTA
385 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* * * *
222619 CAATAATTGGTGGGATGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCTTGTATCCTTATGA
450 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGA
* *
222684 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGT
515 GAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATAGAGATTAGTATGAC--TTCA-GTTTGT
* * * * *
222749 CTTCTATAATAGACAAACTTTGATTGC-AGT-AAAAACGGTGGATAGAAAAGCTTTTCTTACGAC
577 CTTATTTAAGAGACAAACTTTGATT-CTA-TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * * **
222812 CCCAAAGCATTAATGTCTCGCATCTTAATGAAAGGAATGTGTTCTTGGTTCCTAATTTTGAAAGA
640 ACCAAAGCATTAATGTCTTGTATCCTAAT-AAAGGGATGTGTTCTTGGTTCC-AATCTAAAAAG-
*
222877 AATGGAGACTGTTATGAGAATCGATGCTTGT-TATATTTAATG-GATGAATTTTGATTTTAAGGA
702 AATGGAGGCTGTTATGAGAATCGATGCTTGTCT-TATTTAA-GAGATGAATTTTGATTTTAAGGA
* *
222940 AAATAGAGCAAAGCAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
765 AAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
223005 GAATATGTTTATAGTGCCTAA-CTGCAAAATGATTGAAGATCCTTACTAGAATCCAT
830 GAATATGTTTATAATGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCAT
223061 TATGTTCTTT
Statistics
Matches: 1573, Mismatches: 219, Indels: 95
0.83 0.12 0.05
Matches are distributed among these distances:
944 47 0.03
945 70 0.04
946 680 0.43
947 16 0.01
948 61 0.04
949 78 0.05
950 329 0.21
951 14 0.01
952 272 0.17
953 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (942 bp):
TTTCTTGCAAAACCAAAGCATAAATATCGTCATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
TCTTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TCTATAATAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTA
ATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGC
TTGTCTATTTAAATGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATATATCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGAC
TATGATTATGGTGCCTAATCCTGAAAAGAATAGAGATTAGTATGACTTCAGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATT
AATGTCTTGTATCCTAATAAAGGGATGTGTTCTTGGTTCCAATCTAAAAAGAATGGAGGCTGTTA
TGAGAATCGATGCTTGTCTTATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
AGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAATG
CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACAAACT
GAGACTTTACAAAAATCAGTGCAAAGAAAGCC
Found at i:225458 original size:12 final size:12
Alignment explanation
Indices: 225420--225485 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
225410 TTTTTTAAAA
225420 AACAGTAATGATG
1 AACAGT-ATGATG
*
225433 AACATTACTG-TG
1 AACAGTA-TGATG
225445 AACAGTATGATG
1 AACAGTATGATG
* **
225457 AATAGTAACATG
1 AACAGTATGATG
*
225469 AACAGTGTG-TG
1 AACAGTATGATG
225480 AACAGT
1 AACAGT
225486 GCATAGATAG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
11 10 0.24
12 25 0.60
13 7 0.17
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.26
Consensus pattern (12 bp):
AACAGTATGATG
Found at i:225952 original size:43 final size:43
Alignment explanation
Indices: 225905--225992 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
225895 TAGCACAAAC
*
225905 CCTAATGGACTTATTGTGCTAACAAGCACAATTCTTAATTAAA
1 CCTAATGGACTTATTGTGCTAACAAGCACAATTCGTAATTAAA
* * *
225948 CCTAATGGATTTATTGTGCTAATAAGCCCAATTCGTAATTAAA
1 CCTAATGGACTTATTGTGCTAACAAGCACAATTCGTAATTAAA
225991 CC
1 CC
225993 AAAATAACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (43 bp):
CCTAATGGACTTATTGTGCTAACAAGCACAATTCGTAATTAAA
Found at i:231793 original size:14 final size:14
Alignment explanation
Indices: 231766--231804 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
231756 CAATTTAATC
*
231766 AAAATTTAAATAAAT
1 AAAA-TTAATTAAAT
*
231781 TAAATTAATTAAAT
1 AAAATTAATTAAAT
231795 AAAATTAATT
1 AAAATTAATT
231805 TTTTCTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAATTAATTAAAT
Found at i:232766 original size:249 final size:251
Alignment explanation
Indices: 232306--232766 Score: 657
Period size: 249 Copynumber: 1.8 Consensus size: 251
232296 GACCTTGTCC
** *
232306 TATGCGTAATACCTTCACATGATATCCATGATCAACTTAAGGATAAAATTCGTTTTACCTACTTG
1 TATGCGTAATACCTTCACATGATATCCATGATCAACTTAAGGATAAAATTCCATTT--CTACTTA
* * * *
232371 ATCATTTTATCTTAAAGTTTCGTTATACTCTCTATGTGAAAAGGATTGTTCATCATATGTGAACA
64 ATCACTTTATCTTAAAGTTTCATTATACTCTCTATGTAAAAAGGATTGTTCACCATATGTGAACA
* *
232436 ATTTATCATTTGATATACAAATGACCGAAGCCTTATCCATTTTCACAATTCTATATAATGCCTTT
129 ATTTATCATTTGATATACAAATGACCAAAGCCTCATCCATTTTCACAATTCTATATAATGCCTTT
232501 TAAGAGCATAACCTTAAGTTTTTATAGGAGCTATGATTCCAAATCTATTATCTTGTTA
194 TAAGAGCATAACCTTAAGTTTTTATAGGAGCTATGATTCCAAATCTATTATCTTGTTA
* *
232559 TATGTGTAATATCC-TCATATGATATCCATGATCAACTT-AGAGATAAAA-TCCATTT-TACTTA
1 TATGCGTAATA-CCTTCACATGATATCCATGATCAACTTAAG-GATAAAATTCCATTTCTACTTA
*
232620 ATCACTTTATCTTAAAG-TTCTATTATACTCT-TCATGTAAAAATGATTGTTCACCATATGTGAA
64 ATCACTTTATCTTAAAGTTTC-ATTATACTCTCT-ATGTAAAAAGGATTGTTCACCATATGTGAA
* * * * *
232683 TAATTTATCATTTGATATACAATTGATCAAAGTCTCATCCATTTTCACTATTCTATATAATGCCT
127 CAATTTATCATTTGATATACAAATGACCAAAGCCTCATCCATTTTCACAATTCTATATAATGCCT
232748 TTTACA-AGCATAACCTTAA
192 TTTA-AGAGCATAACCTTAA
232767 CTCTTTACAG
Statistics
Matches: 186, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
248 4 0.02
249 132 0.71
250 1 0.01
252 7 0.04
253 40 0.22
254 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.39
Consensus pattern (251 bp):
TATGCGTAATACCTTCACATGATATCCATGATCAACTTAAGGATAAAATTCCATTTCTACTTAAT
CACTTTATCTTAAAGTTTCATTATACTCTCTATGTAAAAAGGATTGTTCACCATATGTGAACAAT
TTATCATTTGATATACAAATGACCAAAGCCTCATCCATTTTCACAATTCTATATAATGCCTTTTA
AGAGCATAACCTTAAGTTTTTATAGGAGCTATGATTCCAAATCTATTATCTTGTTA
Found at i:235506 original size:82 final size:83
Alignment explanation
Indices: 235327--235542 Score: 258
Period size: 82 Copynumber: 2.6 Consensus size: 83
235317 ACCAAGACAA
* * * *
235327 TTATCTTAAGACATGTCTCCTTTAGACATTGTATTGTTAAGACAAGATTATCCATATTGTTTTAT
1 TTATCTAAAGACATGTCTACTTTAGACATTGTCTTGTTAAGACAAGATTATCCATATTGTCTTAT
* *
235392 TGAGACATCAAGAAATCT
66 TAAGACATCAAGAAAGCT
* * * * * *
235410 TTTTTTAACG-CATGTCTATTTTAGACATTGTCTTGTTAAGACAAGCTTATCCATTTTGTCTTAT
1 TTATCTAAAGACATGTCTACTTTAGACATTGTCTTGTTAAGACAAGATTATCCATATTGTCTTAT
*
235474 TAAGACATCAAGATAGC-
66 TAAGACATCAAGAAAGCT
* * *
235491 TTATCTAAAGACATGTCTACCTTAGACGTTG-CTTAGTTAAGACAAGTTTATC
1 TTATCTAAAGACATGTCTACTTTAGACATTGTCTT-GTTAAGACAAGATTATC
235543 TGCATTATCT
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
81 10 0.09
82 95 0.86
83 6 0.05
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (83 bp):
TTATCTAAAGACATGTCTACTTTAGACATTGTCTTGTTAAGACAAGATTATCCATATTGTCTTAT
TAAGACATCAAGAAAGCT
Found at i:235701 original size:28 final size:28
Alignment explanation
Indices: 235670--235723 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
235660 TCTTAGGAAA
* *
235670 ACAAGCTTATCCTTATTTTCTTAATATT
1 ACAAGCTTATCCATATTGTCTTAATATT
235698 ACAAGCTTATCCATATTGTCTTAATA
1 ACAAGCTTATCCATATTGTCTTAATA
235724 GATGTGTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (28 bp):
ACAAGCTTATCCATATTGTCTTAATATT
Found at i:243338 original size:51 final size:51
Alignment explanation
Indices: 243277--243373 Score: 131
Period size: 51 Copynumber: 1.9 Consensus size: 51
243267 GCTTTTGTCC
* * * * * *
243277 TTATTGATTACTGTTAGGACTGTGATTATGATTGTCCTTGTTTAGTTATGA
1 TTATTAATTACTGTTAAGACTATGATTAGGATTGTCATTATTTAGTTATGA
*
243328 TTATTAATTACTGTTAATACTATGATTAGGATTGTCATTATTTAGT
1 TTATTAATTACTGTTAAGACTATGATTAGGATTGTCATTATTTAGT
243374 CAAGACCCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.26, C:0.07, G:0.18, T:0.49
Consensus pattern (51 bp):
TTATTAATTACTGTTAAGACTATGATTAGGATTGTCATTATTTAGTTATGA
Found at i:245297 original size:28 final size:29
Alignment explanation
Indices: 245235--245297 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
245225 TTATTCTTTA
*
245235 TTGATTTCTTTTCCTTTGAAATTTCTTGC
1 TTGATTTCTTTTCCTTTCAAATTTCTTGC
*
245264 TT-ATTTCGTTTT-CTTTCATATTTCTTG-
1 TTGATTTC-TTTTCCTTTCAAATTTCTTGC
245291 TTGATTT
1 TTGATTT
245298 TACTTCCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 2 0.07
28 22 0.73
29 6 0.20
ACGTcount: A:0.13, C:0.14, G:0.10, T:0.63
Consensus pattern (29 bp):
TTGATTTCTTTTCCTTTCAAATTTCTTGC
Found at i:250216 original size:20 final size:20
Alignment explanation
Indices: 250170--250208 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
250160 TTTCAAATGC
*
250170 ATTGTATCAATACATTATGA
1 ATTGTATCAATACATTAGGA
250190 ATTGTATCAATACA-TAGGA
1 ATTGTATCAATACATTAGGA
250209 GTGTGTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (20 bp):
ATTGTATCAATACATTAGGA
Found at i:251729 original size:18 final size:18
Alignment explanation
Indices: 251690--251729 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
251680 ATCAAAGATG
*
251690 ATGACGAAGATGATGAAG
1 ATGACGAAGATGATGAAC
* *
251708 ATGACGATGATGATGATC
1 ATGACGAAGATGATGAAC
251726 ATGA
1 ATGA
251730 AGTTAACTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
ATGACGAAGATGATGAAC
Found at i:258692 original size:33 final size:32
Alignment explanation
Indices: 258649--258712 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
258639 CACACCCAGA
*
258649 TGTATTGATACATATTGCTTAGTATCAATACAT
1 TGTATCGATACATATT-CTTAGTATCAATACAT
* * *
258682 TGTATCGATACATGTTCTTTGTATCGATACA
1 TGTATCGATACATATTCTTAGTATCAATACA
258713 CCATAGAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTCTTAGTATCAATACAT
Found at i:258827 original size:52 final size:52
Alignment explanation
Indices: 258760--258868 Score: 139
Period size: 52 Copynumber: 2.1 Consensus size: 52
258750 ACCCCTAAGT
* *
258760 GAATTGTATTAATACATGGTAAATTGTATCGATACATTAAGCCCAAGGGCTA
1 GAATTGTATTAATACATGATAAATTGTATCGATACATTAAGCCCAACGGCTA
* * * * *
258812 TAATTGTATCT-ATACATTATGAATTGTATCGATACATTGAGTCCAACGGCTA
1 GAATTGTAT-TAATACATGATAAATTGTATCGATACATTAAGCCCAACGGCTA
258864 GAATT
1 GAATT
258869 TCAAATGCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
52 47 0.98
53 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (52 bp):
GAATTGTATTAATACATGATAAATTGTATCGATACATTAAGCCCAACGGCTA
Found at i:266828 original size:13 final size:13
Alignment explanation
Indices: 266810--266837 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
266800 ATACAAAGAT
266810 CAATGTATCGATA
1 CAATGTATCGATA
266823 CAATGTATCGATA
1 CAATGTATCGATA
266836 CA
1 CA
266838 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Done.