Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold347
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 182017
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
File 1 of 2
Found at i:174 original size:51 final size:52
Alignment explanation
Indices: 70--179 Score: 138
Period size: 51 Copynumber: 2.1 Consensus size: 52
60 TTAATTACGG
* *
70 GTTGGAGTGTCCCCGATGTGAAGAAATAGTGTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTCTCCCCGATGTGAAGAAATAG-CTTTTTTTGGAAATAAAATCGGA
123 GTTGGAGTCTCCCCGAT-T-ATAGAAATA-CTTTTTTT-GAAAGTAAAAATCGGA
1 GTTGGAGTCTCCCCGATGTGA-AGAAATAGCTTTTTTTGGAAA-T-AAAATCGGA
174 GTTGGA
1 GTTGGA
180 ATATCCTCGA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
49 4 0.08
50 8 0.15
51 16 0.31
52 8 0.15
53 16 0.31
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (52 bp):
GTTGGAGTCTCCCCGATGTGAAGAAATAGCTTTTTTTGGAAATAAAATCGGA
Found at i:2567 original size:13 final size:13
Alignment explanation
Indices: 2549--2574 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2539 ACAAAGATCC
2549 ATGTATCGATACA
1 ATGTATCGATACA
2562 ATGTATCGATACA
1 ATGTATCGATACA
2575 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2570 original size:33 final size:33
Alignment explanation
Indices: 2528--2594 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2518 AAAATTTCCA
***
2528 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2561 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2594 A
1 A
2595 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2638 original size:19 final size:18
Alignment explanation
Indices: 2614--2681 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
2604 CAGTAGCTAA
2614 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2633 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2648 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2665 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2682 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2654 original size:13 final size:13
Alignment explanation
Indices: 2636--2660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2626 ACAATACTTA
2636 TGTATCGATACAT
1 TGTATCGATACAT
2649 TGTATCGATACA
1 TGTATCGATACA
2661 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2658 original size:32 final size:32
Alignment explanation
Indices: 2617--2679 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2607 TAGCTAATTA
*
2617 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
2649 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2680 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2761 original size:21 final size:21
Alignment explanation
Indices: 2737--2793 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
2727 CATTTGTAGG
2737 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
2758 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
2779 ATGTATCGATACATT
1 ATGTATCGATACATT
2794 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:2826 original size:18 final size:18
Alignment explanation
Indices: 2803--2838 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2793 TTAAATTTTT
2803 TTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTCAA
2821 TTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTCAA
2839 ACACTTTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTTTTTTCAA
Found at i:3515 original size:55 final size:55
Alignment explanation
Indices: 3431--3998 Score: 864
Period size: 55 Copynumber: 10.3 Consensus size: 55
3421 ATAAATTGTA
* * * * * *
3431 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3486 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3541 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3596 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3651 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
3706 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3761 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
3816 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3871 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
3926 TCCTGCTCTTTGAGGACTGGACAA--TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3981 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
3999 AAAAAGCGGA
Statistics
Matches: 480, Mismatches: 23, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
54 10 0.02
55 456 0.95
56 12 0.03
57 2 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:4984 original size:1 final size:1
Alignment explanation
Indices: 4980--5031 Score: 68
Period size: 1 Copynumber: 52.0 Consensus size: 1
4970 CTTTTCTCTC
* * * *
4980 TTTTTCTTTGTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5032 GAAGAGAAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.02, G:0.06, T:0.92
Consensus pattern (1 bp):
T
Found at i:17492 original size:28 final size:28
Alignment explanation
Indices: 17411--17492 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
17401 TTTTGGAGAT
*
17411 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
17439 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
17467 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
17493 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:17635 original size:51 final size:51
Alignment explanation
Indices: 17475--17645 Score: 207
Period size: 51 Copynumber: 3.3 Consensus size: 51
17465 GAAATAACGA
* *
17475 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
17527 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
17580 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
17631 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
17646 TCAGAAATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 33 0.34
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:17670 original size:79 final size:81
Alignment explanation
Indices: 17577--17726 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
17567 AAAATAAAAC
* **
17577 CGGGGTTGGAGTATCCCCGATTATGAAAAA-TCG-ATATTTTGAAAATAAAGTCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTCGTATATTTTGAAAATAAAATCGGAATTGGAGT
17640 ATCCCCTCAGAAATAA
66 ATCCCCTCAGAAATAA
* * *
17656 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTTGAAAATAAAATCGGAATTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTCGTATATTTTGAAAATAAAATCGGAATTGGAGT
17721 ATCCCC
66 ATCCCC
17727 GATTAAAGGA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 29 0.46
80 2 0.03
81 32 0.51
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (81 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTCGTATATTTTGAAAATAAAATCGGAATTGGAGT
ATCCCCTCAGAAATAA
Found at i:17727 original size:53 final size:52
Alignment explanation
Indices: 17656--17830 Score: 203
Period size: 53 Copynumber: 3.3 Consensus size: 52
17646 TCAGAAATAA
*
17656 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGG-ATATTTTGAAAATAAAAT
** * * * *
17709 CGGAATTGGAGTATCCCCGATTAAAG-GAGAAATTGG-TGTTGTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT---GTGAAAAATTGGATATTTTGAAAATAAAAT
* * *
17762 CGGGGTTGGAGTATCCCCGATTATGAAAAA-TCGATATTTTGAAAATAAAGT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGATATTTTGAAAATAAAAT
17813 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
17831 TCAGAAATAA
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
50 2 0.02
51 36 0.35
53 54 0.53
55 9 0.09
56 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (52 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGATATTTTGAAAATAAAAT
Found at i:17756 original size:185 final size:184
Alignment explanation
Indices: 17444--17861 Score: 784
Period size: 185 Copynumber: 2.3 Consensus size: 184
17434 TCGGAAGTAA
* * *
17444 CGGGGTTGGAGTATCCCC-GATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTA
1 CGGGGTTGGAGTATCCCCTCA-GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTA
17508 TTTTTGAAAATAAAATCGGAATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATA
65 TTTTTGAAAATAAAATCGGAATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATA
17573 AAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGT
130 AAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGT
17628 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTAT
1 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTA-
17693 TTTTTGAAAATAAAATCGGAATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATA
65 TTTTTGAAAATAAAATCGGAATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATA
17758 AAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGT
130 AAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGT
17813 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
17862 GATTAACGGG
Statistics
Matches: 229, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
184 59 0.26
185 170 0.74
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (184 bp):
CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTAT
TTTTGAAAATAAAATCGGAATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAA
AACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGT
Found at i:17876 original size:27 final size:28
Alignment explanation
Indices: 17813--17888 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
17803 AAAATAAAGT
*
17813 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
17841 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
17868 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
17889 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:17941 original size:56 final size:51
Alignment explanation
Indices: 17872--18004 Score: 135
Period size: 51 Copynumber: 2.5 Consensus size: 51
17862 GATTAACGGG
* *
17872 GTTGGAGTGTCCCCGATTGTGAAGAAATTAGTGTTTTTTTTGGAAA-TAAAATCGGA
1 GTTGGAGTATCCCCGATTGTG-AGAAATTAATG----TTTT-GAAAGTAAAATCGGA
*
17928 GTTGGAGTATCCCCGATTAT-AGAAAATTAATGTTTTGAAAGTAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAG-AAATTAATGTTTTGAAAGTAAAATCGGA
* *
17979 GTTGGAATATCCTCGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGT-GAGAA
18005 TTGAGCAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
50 4 0.06
51 31 0.46
52 2 0.03
53 2 0.03
54 2 0.03
55 8 0.12
56 18 0.27
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.33
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTAATGTTTTGAAAGTAAAATCGGA
Found at i:20368 original size:13 final size:13
Alignment explanation
Indices: 20350--20375 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20340 ACAAAGATCC
20350 ATGTATCGATACA
1 ATGTATCGATACA
20363 ATGTATCGATACA
1 ATGTATCGATACA
20376 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:20371 original size:33 final size:33
Alignment explanation
Indices: 20329--20395 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
20319 AAAATTTCCA
***
20329 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
20362 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
20395 A
1 A
20396 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:20439 original size:19 final size:18
Alignment explanation
Indices: 20415--20482 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
20405 CAGTAGCTAA
20415 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
20434 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
20449 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
20466 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
20483 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:20455 original size:13 final size:13
Alignment explanation
Indices: 20437--20461 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20427 ACAATACTTA
20437 TGTATCGATACAT
1 TGTATCGATACAT
20450 TGTATCGATACA
1 TGTATCGATACA
20462 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20459 original size:32 final size:32
Alignment explanation
Indices: 20418--20480 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
20408 TAGCTAATTA
*
20418 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
20450 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
20481 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:20562 original size:21 final size:21
Alignment explanation
Indices: 20538--20594 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
20528 CATTTGTAGG
20538 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
20559 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
20580 ATGTATCGATACATT
1 ATGTATCGATACATT
20595 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:20605 original size:1 final size:1
Alignment explanation
Indices: 20599--20640 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
20589 TACATTTAAA
***
20599 TTTTTTTTTTTTTTTTTTTTTTCAATTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
20641 CAAACACTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.05, C:0.02, G:0.00, T:0.93
Consensus pattern (1 bp):
T
Found at i:20629 original size:20 final size:20
Alignment explanation
Indices: 20604--20643 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
20594 TTAAATTTTT
20604 TTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTTCAA
20624 TTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTTCAA
20644 ACACTTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTTTCAA
Found at i:22858 original size:50 final size:50
Alignment explanation
Indices: 22783--22906 Score: 194
Period size: 50 Copynumber: 2.5 Consensus size: 50
22773 TGGGTGCAAA
* *
22783 AAAGGTGACTGTAATTGTTGACTATTCTTCACCAACTTTTGACAATCGAG
1 AAAGGTGACTGTAATTGTTGACTATTCTTCACCAACCTTTAACAATCGAG
*
22833 AAAGGTGACTGTAATTGTTGACTATTCTTTACCAACCTTTAACAATCGAG
1 AAAGGTGACTGTAATTGTTGACTATTCTTCACCAACCTTTAACAATCGAG
* * *
22883 AGAGGTGGCCGTAATTGTTGACTA
1 AAAGGTGACTGTAATTGTTGACTA
22907 CCGTAATTGT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (50 bp):
AAAGGTGACTGTAATTGTTGACTATTCTTCACCAACCTTTAACAATCGAG
Found at i:22912 original size:16 final size:16
Alignment explanation
Indices: 22891--22922 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22881 AGAGAGGTGG
22891 CCGTAATTGTTGACTA
1 CCGTAATTGTTGACTA
22907 CCGTAATTGTTGACTA
1 CCGTAATTGTTGACTA
22923 TTCTTCACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (16 bp):
CCGTAATTGTTGACTA
Found at i:22953 original size:66 final size:66
Alignment explanation
Indices: 22843--22972 Score: 224
Period size: 66 Copynumber: 2.0 Consensus size: 66
22833 AAAGGTGACT
* *
22843 GTAATTGTTGACTATTCTTTACCAACCTTTAACAATCGAGAGAGGTGGCCGTAATTGTTGACTAC
1 GTAATTGTTGACTATTCTTCACCAACCTTTAACAATCGAAAGAGGTGGCCGTAATTGTTGACTAC
22908 C
66 C
* *
22909 GTAATTGTTGACTATTCTTCACTAACCTTTGACAATCGAAAGAGGTGGCCGTAATTGTTGACTA
1 GTAATTGTTGACTATTCTTCACCAACCTTTAACAATCGAAAGAGGTGGCCGTAATTGTTGACTA
22973 TTCTTCACCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (66 bp):
GTAATTGTTGACTATTCTTCACCAACCTTTAACAATCGAAAGAGGTGGCCGTAATTGTTGACTAC
C
Found at i:22986 original size:50 final size:50
Alignment explanation
Indices: 22906--23017 Score: 161
Period size: 50 Copynumber: 2.2 Consensus size: 50
22896 ATTGTTGACT
* ** *
22906 ACCGTAATTGTTGACTATTCTTCACTAACCTTTGACAATCGAAAGAGGTG
1 ACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAAAAAAAGGTG
* *
22956 GCCGTAATTGTTGACTATTCTTCACCAACCTTTGATAATAAAAAAAGGTG
1 ACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAAAAAAAGGTG
*
23006 ACCATAATTGTT
1 ACCGTAATTGTT
23018 AACTCTAAGC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (50 bp):
ACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAAAAAAAGGTG
Found at i:23005 original size:116 final size:116
Alignment explanation
Indices: 22793--23017 Score: 317
Period size: 116 Copynumber: 1.9 Consensus size: 116
22783 AAAGGTGACT
* *
22793 GTAATTGTTGACTATTCTTCACCAACTTTTGACAATCGAGAAAGGTGACTGTAATTGTTGACTAT
1 GTAATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAAAGGTGACCGTAATTGTTGACTAT
* ** * * * *
22858 TCTTTACCAACCTTTAACAATCGAGAGAGGTGGCCGTAATTGTTGACTACC
66 TCTTCACCAACCTTTAACAATAAAAAAAGGTGACCATAATTGTTGACTACC
* *
22909 GTAATTGTTGACTATTCTTCACTAACCTTTGACAATCGA-AAGAGGTGGCCGTAATTGTTGACTA
1 GTAATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAA-AGGTGACCGTAATTGTTGACTA
* *
22973 TTCTTCACCAACCTTTGATAATAAAAAAAGGTGACCATAATTGTT
65 TTCTTCACCAACCTTTAACAATAAAAAAAGGTGACCATAATTGTT
23018 AACTCTAAGC
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
115 2 0.02
116 93 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (116 bp):
GTAATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAAAGGTGACCGTAATTGTTGACTAT
TCTTCACCAACCTTTAACAATAAAAAAAGGTGACCATAATTGTTGACTACC
Found at i:23617 original size:15 final size:15
Alignment explanation
Indices: 23599--23636 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
23589 TGATAAATGA
23599 ATTAAATTTAAAAAT
1 ATTAAATTTAAAAAT
*
23614 ATT-AATTTTAAAAT
1 ATTAAATTTAAAAAT
23628 ATTTAAATT
1 A-TTAAATT
23637 AGTTGATATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 11 0.55
15 5 0.25
16 4 0.20
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATTTAAAAAT
Found at i:27982 original size:80 final size:79
Alignment explanation
Indices: 27876--28083 Score: 240
Period size: 79 Copynumber: 2.6 Consensus size: 79
27866 GAGATAATAA
* * * * * **
27876 CGGGGTTGGAGTGTTCCCTT-GAAAATAGCGGGGCTGGAGTATCCCCGGTTGTGAGAAATTGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-
27940 A-TCAGAAAAAAAAAAT
64 ATTCAG-AAAAAAAAAT
* *
27956 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
** * * *
28021 TTTGGAAATAAAGT
66 TCAGAAAAAAAAAT
*
28035 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
28084 GATTAACGGG
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 60 0.55
80 49 0.45
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TCAGAAAAAAAAAT
Found at i:28098 original size:27 final size:27
Alignment explanation
Indices: 28035--28110 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
28025 GAAATAAAGT
28035 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTAT-CCC-CGATAAATAA
* *
28063 CGGGGTTGGAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCGATAAATAA
28090 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
28111 TGTGAAAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 3 0.07
27 28 0.62
28 14 0.31
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGATAAATAA
Found at i:28162 original size:54 final size:51
Alignment explanation
Indices: 28094--28219 Score: 162
Period size: 51 Copynumber: 2.4 Consensus size: 51
28084 GATTAACGGG
* * * *
28094 GTTGGAGTATCCCCGATTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTG---TCTTGAAAATAAAATCGGA
* *
28148 GTTGGAGTATCCCCGATTATTAAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTCTTGAAAATAAAATCGGA
*
28199 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
28220 GAGAATTGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
51 35 0.56
54 28 0.44
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTCTTGAAAATAAAATCGGA
Found at i:30588 original size:13 final size:13
Alignment explanation
Indices: 30570--30597 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
30560 ACAAAGATCC
30570 ATGTATCGATACA
1 ATGTATCGATACA
30583 ATGTATCGATACA
1 ATGTATCGATACA
30596 AT
1 AT
30598 ACTTATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:30607 original size:19 final size:18
Alignment explanation
Indices: 30583--30648 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 18
30573 TATCGATACA
30583 ATGTATCGATACAATACTT
1 ATGTATCGATACAA-ACTT
30602 ATGTATCGATAC--A--T
1 ATGTATCGATACAAACTT
30616 -TGTATCGATACAAAACTT
1 ATGTATCGATAC-AAACTT
30634 ATGTATCGATACAAA
1 ATGTATCGATACAAA
30649 TTGTAGAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.27
14 1 0.02
16 2 0.05
18 4 0.10
19 23 0.56
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (18 bp):
ATGTATCGATACAAACTT
Found at i:30611 original size:32 final size:32
Alignment explanation
Indices: 30549--30647 Score: 146
Period size: 32 Copynumber: 3.1 Consensus size: 32
30539 AAAATTTCCA
*
30549 AATGTATCGATACAAAGA-TCCATGTATCGATAC
1 AATGTATCGATACAAA-ACT-TATGTATCGATAC
*
30582 AATGTATCGATACAATACTTATGTATCGATAC
1 AATGTATCGATACAAAACTTATGTATCGATAC
*
30614 ATTGTATCGATACAAAACTTATGTATCGATAC
1 AATGTATCGATACAAAACTTATGTATCGATAC
30646 AA
1 AA
30648 ATTGTAGAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
32 44 0.73
33 16 0.27
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (32 bp):
AATGTATCGATACAAAACTTATGTATCGATAC
Found at i:30621 original size:13 final size:13
Alignment explanation
Indices: 30603--30627 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30593 ACAATACTTA
30603 TGTATCGATACAT
1 TGTATCGATACAT
30616 TGTATCGATACA
1 TGTATCGATACA
30628 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:30710 original size:21 final size:21
Alignment explanation
Indices: 30684--30739 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
30674 GTTGGGACCC
*
30684 TGTATCGACGCATTCCACAAA
1 TGTATCGACACATTCCACAAA
* *
30705 TGTATCGATACATTCTACAAA
1 TGTATCGACACATTCCACAAA
*
30726 TGTATCGATACATT
1 TGTATCGACACATT
30740 TGGATAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.32
Consensus pattern (21 bp):
TGTATCGACACATTCCACAAA
Found at i:31537 original size:28 final size:28
Alignment explanation
Indices: 31506--31647 Score: 66
Period size: 28 Copynumber: 5.1 Consensus size: 28
31496 TGAGGAGTAA
31506 AAAGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGTGCCACCAACTTGTGTGGGCTTTG
** ** * * *
31534 AAAG-GCGTCCTGCTCTTTGAGGAC--TG
1 AAAGTGCCACCAACT-TGTGTGGGCTTTG
31560 AAAGGTGCCACCAACTTGTGTGGGCTTT-
1 AAA-GTGCCACCAACTTGTGTGGGCTTTG
* * * *
31588 AAGAGGTGTCCTA-C-TCTT-TGAGGAC-TGG
1 AA-A-GTG-CC-ACCAACTTGTGTGGGCTTTG
*
31616 AAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGTGCCACCAACTTGTGTGGGCTTTG
31644 AAAG
1 AAAG
31648 GTGTCCTGCT
Statistics
Matches: 77, Mismatches: 24, Indels: 26
0.61 0.19 0.20
Matches are distributed among these distances:
24 1 0.01
25 3 0.04
26 10 0.13
27 20 0.26
28 30 0.39
29 9 0.12
30 3 0.04
31 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (28 bp):
AAAGTGCCACCAACTTGTGTGGGCTTTG
Found at i:31573 original size:55 final size:55
Alignment explanation
Indices: 31489--32010 Score: 768
Period size: 55 Copynumber: 9.5 Consensus size: 55
31479 AAGTGTATCT
* * * * *
31489 TGCTCATTGAGGAGTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
31544 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* *
31599 TACTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* *
31654 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* *
31709 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * *
31764 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * * *
31819 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
31874 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
*
31929 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
31984 TGCTCTTTGGGGACTGAAAGGTGCCAC
1 TGCTCTTTGAGGACTGAAAGGTGCCAC
32011 TTTAAGAGGT
Statistics
Matches: 423, Mismatches: 32, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
54 21 0.05
55 381 0.90
56 21 0.05
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (55 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
Found at i:31671 original size:26 final size:26
Alignment explanation
Indices: 31642--31786 Score: 71
Period size: 26 Copynumber: 5.3 Consensus size: 26
31632 GTGTGGGCTT
31642 TGAAAGGTGTCCTGCTCTTTGGGGAC
1 TGAAAGGTGTCCTGCTCTTTGGGGAC
** * **
31668 TGAAAGGTG-CCACCAACTTGTGTGGGTT
1 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC
* *
31696 TTAAGAGGTGTCCTGCTCTTTGAGGAC
1 TGAA-AGGTGTCCTGCTCTTTGGGGAC
* ** * * *
31723 TGGAAA-ATG-CCACCAACTTGGGTGGGC
1 T-GAAAGGTGTCCTGC-TCTTTGG-GGAC
31750 TTTGAAAGGTGTCCTGCTCTTTGGGGAC
1 --TGAAAGGTGTCCTGCTCTTTGGGGAC
31778 TGAAAGGTG
1 TGAAAGGTG
31787 CCACCAACTT
Statistics
Matches: 81, Mismatches: 26, Indels: 24
0.62 0.20 0.18
Matches are distributed among these distances:
25 6 0.07
26 27 0.33
27 9 0.11
28 17 0.21
29 16 0.20
30 6 0.07
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGGGGAC
Found at i:31688 original size:110 final size:110
Alignment explanation
Indices: 31505--32010 Score: 872
Period size: 110 Copynumber: 4.6 Consensus size: 110
31495 TTGAGGAGTA
* *
31505 AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
1 AAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCA
*
31570 CCAACTTGTGTGGGCTTTAAGAGGTGTCCTACTCTTTGAGGACTGG
65 CCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
31616 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
1 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
*
31681 CAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
66 CAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
*
31726 AAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
1 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
* * *
31791 CAACTTGTGTGGGCTTTGAA-AGGCGTCTTGCTCTTTGAGGACT-A
66 CAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGG
* * *
31835 AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
1 AAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCA
31900 CCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
65 CCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
31946 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
1 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
32011 TTTAAGAGGT
Statistics
Matches: 372, Mismatches: 19, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
109 6 0.02
110 356 0.96
111 10 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (110 bp):
AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
CAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
Found at i:31712 original size:165 final size:165
Alignment explanation
Indices: 31489--34139 Score: 3806
Period size: 165 Copynumber: 16.1 Consensus size: 165
31479 AAGTGTATCT
* * * * * *
31489 TGCTCATTGAGGAGTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTG
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTGCTCTTTG
* *
31553 AGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTACTCTTTGAGGACTGG
65 AGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGG
31616 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
128 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
31654 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
* *
31719 GGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACT-GAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
* * *
31783 GGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCT
131 -ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * * * *
31819 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTG
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTGCTCTTTG
*
31883 AGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGG
65 AGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGG
31946 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
128 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
31984 TGCTCTTTGGGGACTGAAAGGTG---CC-AC----------TTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
*
32035 GGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
*
32100 ATGCCAACAACTTGTGTGGGCTTTGAAAGGTGTCC
131 ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * *
32135 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
* * * *
32200 GGATTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCTTGCTCTTTGGGGACT-GAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
*
32264 GGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
131 -ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* * * * *
32300 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTG
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTGCTCTTTG
* * *
32364 AGGACT-GAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTACTCTTTGAGGACTGG
65 AGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGG
32427 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
128 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* *
32465 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
* *
32530 GGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACTGGAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
32595 ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
131 ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
32630 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
*
32695 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACT-GAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
* *
32759 GGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
131 -ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * * * *
32795 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTG
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTGCTCTTTG
*
32859 AGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGG
65 AGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGG
32922 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
128 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
32960 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
*
33025 GGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
33090 ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
131 ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * * *
33125 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTTCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
* *
33190 GGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACT-GAAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
* *
33254 GGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCT
131 -ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* * * *
33290 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTTTT
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTG
* * *
33354 AGGACT-AAAAAGTGCAACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GA
65 AGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGA
*
33417 AAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
129 AA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* * *
33455 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTATGTGGGCTTTGAA-AGGTGTCCTGCTCTTT
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTGCTCTTT
* * *
33518 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTTTTAGGACT-AA
64 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGA
* *
33582 AAAGTGCAACCAACTTGTGTGGGCTTTGAAAGGCGTCC
129 AAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
33620 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
*
33685 GGACTGGAAAATGCCACCAACTTATGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAA
66 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGGAA
*
33749 AATGCCACCAACTTATGTGGGCTTTGAAAGGTGTCC
130 AATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
33785 TGCTCTTTG-GAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTG
1 TGCTCTTTGAG-GACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTG
*
33849 AGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAA
65 AGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAA
*
33914 AATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCC
130 AATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* *
33950 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTT
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGG-TTTTAAGAGGTGTCCTGCTCTTT
** * *
34013 GAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGA
64 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGA
*
34077 CTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGTGTCC
124 CTGGAAAATGCCACCAACTTGTGTGGGCTTT----G--AAAGGTGTCC
34125 TGCTCTTTGAGGACT
1 TGCTCTTTGAGGACT
34140 AAAAAGCGGA
Statistics
Matches: 2267, Mismatches: 148, Indels: 132
0.89 0.06 0.05
Matches are distributed among these distances:
150 4 0.00
151 129 0.06
152 5 0.00
154 2 0.00
155 2 0.00
161 2 0.00
162 2 0.00
164 94 0.04
165 1874 0.83
166 76 0.03
168 1 0.00
169 51 0.02
173 1 0.00
175 24 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (165 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAGAGGTGTCCTGCTCTTTGA
GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA
ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
Found at i:32082 original size:55 final size:55
Alignment explanation
Indices: 32017--34144 Score: 3081
Period size: 55 Copynumber: 38.5 Consensus size: 55
32007 CCACTTTAAG
32017 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
32072 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCAACAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
32127 AGGTGTCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* * *
32181 GAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGGGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* * **
32237 AGGTGTCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
*
32291 GAGGTGTCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAA
* ** *
32347 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
32401 GAGGTGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* **
32457 AGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
32511 GAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
32567 AGGTGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* ** *
32622 AGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
*
32676 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* **
32732 AGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
32787 AGGCGTCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAA
* **
32842 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
*
32896 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* ** *
32952 AGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGG-TTTTAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33006 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
*
33062 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33117 AGGTGTCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* * *
33171 GAGGTGTTCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* **
33227 AGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* * *
33281 GAGGTGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33337 AGGTGTCCTGCTCTTTTAGGACT-AAAAAGTGCAACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAA
* **
33392 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33446 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33502 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33557 AGGTGTCCTGCTCTTTTAGGACT-AAAAAGTGCAACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAA
* **
33612 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33666 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTT-AA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33721 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
**
33777 AGGTGTCCTGCTCTTTG-GAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AGGTGTCCTGCTCTTTGAG-GACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33831 GAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
33887 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
*
33942 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
**
33997 AGGTGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT----G-AA
* * * *
34056 AGGCGTCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGAAAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT----G--AA
34117 AGGTGTCCTGCTCTTTGAGGACT-AAAAA
1 AGGTGTCCTGCTCTTTGAGGACTGAAAAA
34145 GCGGAAGGAG
Statistics
Matches: 1877, Mismatches: 155, Indels: 77
0.89 0.07 0.04
Matches are distributed among these distances:
54 73 0.04
55 1677 0.89
56 45 0.02
58 1 0.00
59 24 0.01
60 33 0.02
61 24 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (55 bp):
AGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA
Found at i:32647 original size:26 final size:26
Alignment explanation
Indices: 32618--32762 Score: 73
Period size: 26 Copynumber: 5.3 Consensus size: 26
32608 GTGTGGGCTT
32618 TGAAAGGTGTCCTGCTCTTTGGGGAC
1 TGAAAGGTGTCCTGCTCTTTGGGGAC
** * **
32644 TGAAAGGTG-CCACCAACTTGTGTGGGTT
1 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC
* *
32672 TTAAGAGGTGTCCTGCTCTTTGAGGAC
1 TGAA-AGGTGTCCTGCTCTTTGGGGAC
* ** *
32699 TGGAAA-ATG-CCACCAACTTGTGTGGG-C
1 T-GAAAGGTGTCCTGC-TCTT-TG-GGGAC
32726 TTTGAAAGGTGTCCTGCTCTTTGGGGAC
1 --TGAAAGGTGTCCTGCTCTTTGGGGAC
32754 TGAAAGGTG
1 TGAAAGGTG
32763 CCACCAACTT
Statistics
Matches: 83, Mismatches: 22, Indels: 28
0.62 0.17 0.21
Matches are distributed among these distances:
25 6 0.07
26 26 0.31
27 12 0.14
28 19 0.23
29 14 0.17
30 6 0.07
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGGGGAC
Found at i:33089 original size:27 final size:27
Alignment explanation
Indices: 33007--33089 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
32997 GGGTTTTAAG
33007 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
33034 A-ATG-CCACCAACTTGTGTGGCCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
33062 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
33089 A
1 A
33090 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:33529 original size:27 final size:27
Alignment explanation
Indices: 33389--33529 Score: 65
Period size: 28 Copynumber: 5.1 Consensus size: 27
33379 TGTGGGCTTT
*
33389 GAAAGGCGTCCTGCTCTTTGAGGACT-
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
** * * * *
33415 GAAAGGTG-CCACCAACTTGTGTGGGCTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGACTG
*
33443 TAAGAGGTGTCCTGCTCTTTGAGGACTG
1 GAA-AGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
33471 GAAA-ATG-CCACCAACTTATGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
33499 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
33526 GAAA
1 GAAA
33530 ATGCCACCAA
Statistics
Matches: 77, Mismatches: 28, Indels: 19
0.62 0.23 0.15
Matches are distributed among these distances:
25 6 0.08
26 15 0.19
27 17 0.22
28 20 0.26
29 13 0.17
30 6 0.08
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:35155 original size:13 final size:13
Alignment explanation
Indices: 35132--35187 Score: 64
Period size: 13 Copynumber: 4.4 Consensus size: 13
35122 TTTTTCTCTG
*
35132 TTTTG-TTTTTTG
1 TTTTGTTTTTTTC
35144 TTTTGTTTTTTTCC
1 TTTTGTTTTTTT-C
35158 TTTT-TTTTTTTC
1 TTTTGTTTTTTTC
35170 TTTTGCTTTTTTT-
1 TTTTG-TTTTTTTC
35183 TTTTG
1 TTTTG
35188 AAGAGAAGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
12 10 0.26
13 18 0.46
14 11 0.28
ACGTcount: A:0.00, C:0.07, G:0.09, T:0.84
Consensus pattern (13 bp):
TTTTGTTTTTTTC
Found at i:35161 original size:26 final size:27
Alignment explanation
Indices: 35132--35182 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
35122 TTTTTCTCTG
*
35132 TTTTGTTTTTTGTTTTG-TTTTTTTCC
1 TTTTGTTTTTTCTTTTGCTTTTTTTCC
*
35158 TTTTTTTTTTTCTTTTGCTTTTTTT
1 TTTTGTTTTTTCTTTTGCTTTTTTT
35183 TTTTGAAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (27 bp):
TTTTGTTTTTTCTTTTGCTTTTTTTCC
Found at i:35165 original size:18 final size:18
Alignment explanation
Indices: 35138--35186 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
35128 TCTGTTTTGT
*
35138 TTTTTGTTTTGTTTTTTTCC
1 TTTTT-TTTT-TTCTTTTCC
*
35158 TTTTTTTTTTTCTTTTGC
1 TTTTTTTTTTTCTTTTCC
35176 TTTTTTTTTTT
1 TTTTTTTTTTT
35187 GAAGAGAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 18 0.67
19 4 0.15
20 5 0.19
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (18 bp):
TTTTTTTTTTTCTTTTCC
Found at i:47693 original size:79 final size:79
Alignment explanation
Indices: 47589--47795 Score: 238
Period size: 79 Copynumber: 2.6 Consensus size: 79
47579 GAGATAATAA
* * * ** * **
47589 CGGGGTTGGAGTGTTCCCTT-GAAAATAGCGGGGCTGGAGTATCCCCGGTTGTGAGAAATTGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-
47653 A-TCAAAAAAAAAAAT
64 ATTCAAAAAAAAAAAT
*
47668 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
**** * *
47733 TTTGGAAATAAAGT
66 TCAAAAAAAAAAAT
*
47747 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAAT
47796 GATTAACGGG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 7 0.06
79 102 0.94
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
TCAAAAAAAAAAAT
Found at i:47819 original size:28 final size:28
Alignment explanation
Indices: 47747--47819 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
47737 GAAATAAAGT
*
47747 CGGGGTTGGAGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATTCCCTCGAAAATAA
*
47775 CGGGGTTGGAGTA-TCCC-C-AATGATTAA
1 CGGGGTTGGAGTATTCCCTCGAA--AATAA
47802 CGGGGTTGGAGTATTCCC
1 CGGGGTTGGAGTATTCCC
47820 GATTGTGAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
25 2 0.05
26 1 0.03
27 20 0.50
28 17 0.43
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATTCCCTCGAAAATAA
Found at i:50303 original size:13 final size:13
Alignment explanation
Indices: 50285--50310 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50275 ACAAAGATCC
50285 ATGTATCGATACA
1 ATGTATCGATACA
50298 ATGTATCGATACA
1 ATGTATCGATACA
50311 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:50306 original size:33 final size:33
Alignment explanation
Indices: 50264--50330 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
50254 AAAATTTCCA
***
50264 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
50297 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
50330 A
1 A
50331 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:50374 original size:19 final size:18
Alignment explanation
Indices: 50350--50417 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
50340 CAGTAGCTAA
50350 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
50369 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
50384 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
50401 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
50418 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:50390 original size:13 final size:13
Alignment explanation
Indices: 50372--50396 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50362 ACAATACTTA
50372 TGTATCGATACAT
1 TGTATCGATACAT
50385 TGTATCGATACA
1 TGTATCGATACA
50397 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:50394 original size:32 final size:32
Alignment explanation
Indices: 50353--50415 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
50343 TAGCTAATTA
*
50353 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
50385 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
50416 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:50479 original size:21 final size:21
Alignment explanation
Indices: 50453--50529 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
50443 GTTGGGACCC
* *
50453 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACA-TTCTACAAA
*
50474 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
50495 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
50516 TGTATCGATACATT
1 TGTATCGATACATT
50530 TGGATAATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:51513 original size:14 final size:14
Alignment explanation
Indices: 51496--51526 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
51486 CAAATTTCTA
51496 ATTAAAAATATTTT
1 ATTAAAAATATTTT
51510 ATTAAAAATATTTT
1 ATTAAAAATATTTT
51524 ATT
1 ATT
51527 TATTTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTAAAAATATTTT
Found at i:54203 original size:178 final size:177
Alignment explanation
Indices: 53940--54263 Score: 411
Period size: 178 Copynumber: 1.8 Consensus size: 177
53930 TACCTTTGAA
**
53940 AAGCTAAATCAACAAGATTTCACATAAAAATAATGTAAAATATCAAAAAAATTGCCTCATGGGTC
1 AAGCTAAATCAACAAGATTTCACATAAAAATAATGTAAAATATCAAAAAAATTGCCTCATGAATC
* * * *
54005 AAAAATGAGATGCTACTTGCTTTAATTTTTAGCTGA-ATGG-GTTCTAAGCAACAAACAAAGAAA
66 AAAAAAGAGATGCCACTTGCTTTAATTGTTAGAT-ATA-GGAGTTCTAAGCAACAAACAAAG-AA
54068 AATTCATAATTTATTCAAACGAACTCAAAAAGTTGTGTTATGTTGTTAGC
128 AATTCATAATTTATTCAAACGAACTCAAAAAGTTGTGTTATGTTGTTAGC
* * * * **
54118 AAGCTAACTCAACAAGGTTTTACATAAAAATAATGTAAAATATCTAAAAAATTGTTTCATGAAT-
1 AAGCTAAATCAACAAGATTTCACATAAAAATAATGTAAAATATCAAAAAAATTGCCTCATGAATC
* * * * * *
54182 AAAAAAGGGCATTCCACTTGCTTTAGTTGTTAGATATAGGAGTTCTGAGCAATAGACAAAGAAAA
66 AAAAAAGAG-ATGCCACTTGCTTTAATTGTTAGATATAGGAGTTCTAAGCAACAAACAAAGAAAA
**
54247 TTTGTAATTTATTCAAA
130 TTCATAATTTATTCAAA
54264 TGGAAGTCAT
Statistics
Matches: 123, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
177 29 0.24
178 94 0.76
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (177 bp):
AAGCTAAATCAACAAGATTTCACATAAAAATAATGTAAAATATCAAAAAAATTGCCTCATGAATC
AAAAAAGAGATGCCACTTGCTTTAATTGTTAGATATAGGAGTTCTAAGCAACAAACAAAGAAAAT
TCATAATTTATTCAAACGAACTCAAAAAGTTGTGTTATGTTGTTAGC
Found at i:54942 original size:2 final size:2
Alignment explanation
Indices: 54929--54960 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
54919 GATCTCGAAA
*
54929 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54961 TTGTTCCAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:58967 original size:2 final size:2
Alignment explanation
Indices: 58962--58997 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
58952 GTGTGTGTAA
58962 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58998 GGCATTTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62004 original size:2 final size:2
Alignment explanation
Indices: 61999--62037 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
61989 TCTTAAAAAA
61999 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
62038 GTGAGAAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63369 original size:24 final size:24
Alignment explanation
Indices: 63337--63383 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
63327 AAAATAAACT
63337 AAAAATATCACCA-CCAAGATGGTG
1 AAAAATATCACCATCC-AGATGGTG
63361 AAAAATATCACCATCCAGATGGT
1 AAAAATATCACCATCCAGATGGT
63384 CTGCCATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.19
Consensus pattern (24 bp):
AAAAATATCACCATCCAGATGGTG
Found at i:72994 original size:20 final size:20
Alignment explanation
Indices: 72932--72996 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
72922 TCAGTTGAAG
*
72932 TGTAAAAATATTAACATAAC
1 TGTAAAAATATTAAAATAAC
* * * *
72952 TCTAAAAGT-TAACAAATGA-
1 TGTAAAAATATTA-AAATAAC
72971 TGTAAAAATATTAAAATAAC
1 TGTAAAAATATTAAAATAAC
72991 TGTAAA
1 TGTAAA
72997 GCTTGATTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
19 14 0.42
20 19 0.58
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (20 bp):
TGTAAAAATATTAAAATAAC
Found at i:74142 original size:180 final size:182
Alignment explanation
Indices: 73838--74173 Score: 437
Period size: 180 Copynumber: 1.9 Consensus size: 182
73828 ATTCAAATGG
* * * * *
73838 AAGTCATGTATTATAAGTTATTGGAAAGATAACTTAATAAGATTTCATATAAAAATAATGTAAAA
1 AAGTCATATATGATAAGTTATTGAAAAGATAACTTAATAAGATTTAAAATAAAAATAATGTAAAA
* * * * *
73903 TACTTATAAAATCGTTTTATGGGTCAAAAAATGGATGCCACTTGCTCTAGTTACTGGGCATAGAA
66 AACTCATAAAATCGTTTCATGGGTCAAAAAAGGGATGCCAATTGCTCTAGTTACTGGGCATAGAA
* * *
73968 GTTTTAAGTAACAGACAAAGAAAAATTCGAAACTTATTCAAACGGATTCAAA
131 ATTCTAAGTAACAGACAAAAAAAAATTCGAAACTTATTCAAACGGATTCAAA
*
74020 AAGTCATATATGAT-AGTTATTGAAAAGATAACTTGATAA-AGTTTAAAAT-AAAATAATGTAAA
1 AAGTCATATATGATAAGTTATTGAAAAGATAACTTAATAAGA-TTTAAAATAAAAATAATGTAAA
* * * * *
74082 AAACTCATAGAATCGTTTCATGGGT-AAAAAAGGGGATGCTAATTGCTTTGGTTGCTGGGCATAG
65 AAACTCATAAAATCGTTTCATGGGTCAAAAAA-GGGATGCCAATTGCTCTAGTTACTGGGCATAG
**
74146 AAATTCTAAGTAATGGACAAAAAAAAAT
129 AAATTCTAAGTAACAGACAAAAAAAAAT
74174 AATGGACATA
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
179 6 0.05
180 84 0.64
181 29 0.22
182 12 0.09
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (182 bp):
AAGTCATATATGATAAGTTATTGAAAAGATAACTTAATAAGATTTAAAATAAAAATAATGTAAAA
AACTCATAAAATCGTTTCATGGGTCAAAAAAGGGATGCCAATTGCTCTAGTTACTGGGCATAGAA
ATTCTAAGTAACAGACAAAAAAAAATTCGAAACTTATTCAAACGGATTCAAA
Found at i:75858 original size:2 final size:2
Alignment explanation
Indices: 75851--75893 Score: 61
Period size: 2 Copynumber: 21.5 Consensus size: 2
75841 TATAAATTAA
*
75851 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT CAT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
75893 A
1 A
75894 GTAGAAAGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 1 0.03
2 34 0.92
3 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:79742 original size:26 final size:28
Alignment explanation
Indices: 79696--79751 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 28
79686 TGATTCGTGA
79696 TATTTTTAAATTAAAATATTA-T-TTAT
1 TATTTTTAAATTAAAATATTAGTATTAT
* *
79722 TATTTTTTAA-TAAATTAATTAGTATTAT
1 TATTTTTAAATTAAAAT-ATTAGTATTAT
79750 TA
1 TA
79752 ATATGTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 5 0.20
26 13 0.52
27 1 0.04
28 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (28 bp):
TATTTTTAAATTAAAATATTAGTATTAT
Found at i:79796 original size:33 final size:34
Alignment explanation
Indices: 79759--79831 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 34
79749 TTAATATGTG
79759 TAAAATTTATTTATAAATTATAATAATCATA-TT
1 TAAAATTTATTTATAAATTATAATAATCATATTT
* *
79792 TAAAATTTATTTATAAATTATGATAATTATATTT
1 TAAAATTTATTTATAAATTATAATAATCATATTT
79826 TAAAAT
1 TAAAAT
79832 GATAATTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
33 29 0.78
34 8 0.22
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (34 bp):
TAAAATTTATTTATAAATTATAATAATCATATTT
Found at i:80731 original size:21 final size:22
Alignment explanation
Indices: 80679--80731 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
80669 TAGATTTAGT
*
80679 TTATAATTTATAAATAAATCTA
1 TTATAATTTATAAATAAATATA
*
80701 TT-TTATTTATAAATAAA-ATA
1 TTATAATTTATAAATAAATATA
*
80721 TTATAAATTAT
1 TTATAATTTAT
80732 GCTACACTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 4 0.15
21 20 0.77
22 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TTATAATTTATAAATAAATATA
Found at i:85716 original size:2 final size:2
Alignment explanation
Indices: 85709--85746 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
85699 AGTCTAATAC
85709 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85747 TTGTTCCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86218 original size:29 final size:27
Alignment explanation
Indices: 86177--86232 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
86167 TTAAGTTATG
86177 ATTTAAAAATAATTAAAATTTAAGTTTAA
1 ATTTAAAAATAA-TAAAATTTAA-TTTAA
** *
86206 ATTTAAATTTAATATAATTTAATTTAA
1 ATTTAAAAATAATAAAATTTAATTTAA
86233 CTTGAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.21
28 9 0.38
29 10 0.42
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTTAAAAATAATAAAATTTAATTTAA
Found at i:87128 original size:16 final size:17
Alignment explanation
Indices: 87107--87143 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
87097 TCTTTGCATA
87107 ATATAAAATAATATA-T
1 ATATAAAATAATATATT
87123 ATAT-AAATAATATATT
1 ATATAAAATAATATATT
87139 ATATA
1 ATATA
87144 GTTGAAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAAAATAATATATT
Found at i:87825 original size:12 final size:12
Alignment explanation
Indices: 87800--87835 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
87790 AAATCAAATC
*
87800 ATTA-AAAATTA
1 ATTATAAAATAA
87811 ATTATAAAATAA
1 ATTATAAAATAA
87823 ATTATAAAATAA
1 ATTATAAAATAA
87835 A
1 A
87836 AATAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATTATAAAATAA
Found at i:90976 original size:26 final size:25
Alignment explanation
Indices: 90947--91006 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
90937 TGATTCATGA
90947 TATTTTTAAATTAAAAT-ATTATTTAT
1 TATTTTTAAA-TAAAATAATTA-TTAT
* *
90973 TATTTTTTAATAAATTAATTATTAT
1 TATTTTTAAATAAAATAATTATTAT
*
90998 TATTATTAA
1 TATTTTTAA
91007 TATATGTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 16 0.55
26 13 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTTTTAAATAAAATAATTATTAT
Found at i:90989 original size:22 final size:24
Alignment explanation
Indices: 90956--91008 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
90946 ATATTTTTAA
*
90956 ATTAA-AATATTATTTATTATT-TT
1 ATTAATAA-ATTAATTATTATTATT
90979 -TTAATAAATTAATTATTATTATT
1 ATTAATAAATTAATTATTATTATT
91002 ATTAATA
1 ATTAATA
91009 TATGTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 16 0.62
23 4 0.15
24 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTAATAAATTAATTATTATTATT
Found at i:91050 original size:33 final size:32
Alignment explanation
Indices: 91004--91085 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 32
90994 TTATTATTAT
*
91004 TAATATATGTAAAATTTATTTATAAATTATAA
1 TAATATATTTAAAATTTATTTATAAATTATAA
*
91036 TAATCATATTTAAAATTTATTTATAAATTATGA
1 TAAT-ATATTTAAAATTTATTTATAAATTATAA
91069 TAATTATATTTTAAAAT
1 TAA-TATA-TTTAAAAT
91086 GATAATTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
32 4 0.09
33 32 0.71
34 9 0.20
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (32 bp):
TAATATATTTAAAATTTATTTATAAATTATAA
Found at i:93693 original size:18 final size:19
Alignment explanation
Indices: 93670--93707 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
93660 AAAATATGTT
* *
93670 AAATTATTTATATT-TTAA
1 AAATTAATTAAATTATTAA
93688 AAATTAATTAAATTATTAA
1 AAATTAATTAAATTATTAA
93707 A
1 A
93708 TTATTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATTAATTAAATTATTAA
Found at i:94733 original size:15 final size:15
Alignment explanation
Indices: 94713--94747 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
94703 TATTTTTTAA
**
94713 ATATTTAATAGTAAT
1 ATATTTAATAAAAAT
94728 ATATTTAATAAAAAT
1 ATATTTAATAAAAAT
94743 ATATT
1 ATATT
94748 ATATTTATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (15 bp):
ATATTTAATAAAAAT
Found at i:94791 original size:16 final size:19
Alignment explanation
Indices: 94760--94801 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
94750 ATTTATACGT
94760 AATTTTATTAATATC-TAA
1 AATTTTATTAATATCTTAA
94778 AATTTT-TT-ATATCTTAA
1 AATTTTATTAATATCTTAA
94795 AATTTTA
1 AATTTTA
94802 ATTTTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.23
17 11 0.50
18 6 0.27
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
AATTTTATTAATATCTTAA
Found at i:95270 original size:13 final size:13
Alignment explanation
Indices: 95252--95276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95242 GATTGATCGA
95252 ATATATTTATAAT
1 ATATATTTATAAT
95265 ATATATTTATAA
1 ATATATTTATAA
95277 AAAGATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATTTATAAT
Found at i:95763 original size:39 final size:37
Alignment explanation
Indices: 95720--95804 Score: 84
Period size: 39 Copynumber: 2.2 Consensus size: 37
95710 TAAATATTAA
95720 AATTAAAATTTTTAATTT-ATTAAATATTATTTT-TAAAAT
1 AATTAAAA--TTTAATTTAATTAAA-ATT-TTTTATAAAAT
**
95759 AATTATATAATTTAATTTAATTAAAATTTTTTATTCAAT
1 AATTA-A-AATTTAATTTAATTAAAATTTTTTATAAAAT
95798 AATTAAA
1 AATTAAA
95805 TTAACTTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
37 1 0.03
38 5 0.12
39 25 0.62
40 7 0.17
41 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (37 bp):
AATTAAAATTTAATTTAATTAAAATTTTTTATAAAAT
Found at i:100030 original size:22 final size:22
Alignment explanation
Indices: 100000--100052 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
99990 TGTTGATTAA
100000 ATTG-TGATTTGATAATTTATC
1 ATTGTTGATTTGATAATTTATC
* *
100021 ATTGTTGATTTGGTGATTTATC
1 ATTGTTGATTTGATAATTTATC
100043 ATTGTTGATT
1 ATTGTTGATT
100053 AAATTAGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 4 0.14
22 25 0.86
ACGTcount: A:0.23, C:0.04, G:0.19, T:0.55
Consensus pattern (22 bp):
ATTGTTGATTTGATAATTTATC
Found at i:100075 original size:34 final size:34
Alignment explanation
Indices: 100037--100175 Score: 158
Period size: 34 Copynumber: 4.1 Consensus size: 34
100027 GATTTGGTGA
100037 TTTATCATTGTTGATTAAATTAG-AGATTTGATAG
1 TTTATCATTGTTGATTAAATTAGTA-ATTTGATAG
* *
100071 TTTATCATTGTTGATTAAATAAGTAATTT-AGTGG
1 TTTATCATTGTTGATTAAATTAGTAATTTGA-TAG
* * * *
100105 TTTACCATTGTTGACTAAATGAG-AGATTTGGTAG
1 TTTATCATTGTTGATTAAATTAGTA-ATTTGATAG
* *
100139 TTTGTCATTGTTGATTAAATTGGTAATTTGATAG
1 TTTATCATTGTTGATTAAATTAGTAATTTGATAG
100173 TTT
1 TTT
100176 TTAACAAACC
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
33 2 0.02
34 83 0.95
35 2 0.02
ACGTcount: A:0.29, C:0.04, G:0.19, T:0.47
Consensus pattern (34 bp):
TTTATCATTGTTGATTAAATTAGTAATTTGATAG
Found at i:100124 original size:68 final size:68
Alignment explanation
Indices: 100028--100167 Score: 199
Period size: 68 Copynumber: 2.1 Consensus size: 68
100018 ATCATTGTTG
* * * *
100028 ATTTGGTGATTTATCATTGTTGATTAAATTAGAGATTTGATAGTTTATCATTGTTGATTAAATAA
1 ATTTAGTGATTTACCATTGTTGACTAAATGAGAGATTTGATAGTTTATCATTGTTGATTAAATAA
100093 GTA
66 GTA
* * * **
100096 ATTTAGTGGTTTACCATTGTTGACTAAATGAGAGATTTGGTAGTTTGTCATTGTTGATTAAATTG
1 ATTTAGTGATTTACCATTGTTGACTAAATGAGAGATTTGATAGTTTATCATTGTTGATTAAATAA
100161 GTA
66 GTA
100164 ATTT
1 ATTT
100168 GATAGTTTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.29, C:0.04, G:0.20, T:0.46
Consensus pattern (68 bp):
ATTTAGTGATTTACCATTGTTGACTAAATGAGAGATTTGATAGTTTATCATTGTTGATTAAATAA
GTA
Found at i:100526 original size:19 final size:18
Alignment explanation
Indices: 100475--100542 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
100465 TTGTCGATGC
* *
100475 ACTA-TCACGTATACAGAT
1 ACTATTCACGTATA-TGAA
100493 ACTATTCACGTATATGGAA
1 ACTATTCACGTATAT-GAA
*
100512 ACTATTCACGTATATGAGC
1 ACTATTCACGTATATGA-A
100531 ACTATTCACGTA
1 ACTATTCACGTA
100543 AAATAGTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
18 6 0.14
19 38 0.86
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATATGAA
Found at i:107618 original size:10 final size:11
Alignment explanation
Indices: 107584--107630 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
107574 TAATTGAATT
*
107584 TATAAACATAA
1 TATAAAAATAA
*
107595 CATAAAAAATTAA
1 TAT-AAAAA-TAA
107608 T-TAAAAATAA
1 TATAAAAATAA
107618 TATAAAAATAA
1 TATAAAAATAA
107629 TA
1 TA
107631 CGAATATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 4 0.13
11 18 0.60
12 5 0.17
13 3 0.10
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (11 bp):
TATAAAAATAA
Found at i:107629 original size:21 final size:19
Alignment explanation
Indices: 107599--107646 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
107589 ACATAACATA
107599 AAAAATTAATTAAAAATAATAT
1 AAAAA-TAA-TAAAAAT-ATAT
**
107621 AAAAATAATACGAATATAT
1 AAAAATAATAAAAATATAT
107640 AAAAATA
1 AAAAATA
107647 TACAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 5 0.21
21 3 0.12
22 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATAATAAAAATATAT
Found at i:107659 original size:18 final size:19
Alignment explanation
Indices: 107619--107660 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
107609 TAAAAATAAT
* * *
107619 ATAAAAATAATACGAATAT
1 ATAAAAATAATACAAAAAA
107638 ATAAAAAT-ATACAAAAAA
1 ATAAAAATAATACAAAAAA
107656 ATAAA
1 ATAAA
107661 TTATCAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.21
Consensus pattern (19 bp):
ATAAAAATAATACAAAAAA
Found at i:107708 original size:12 final size:13
Alignment explanation
Indices: 107656--107707 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
107646 ATACAAAAAA
107656 ATAAA-TTATCAAT
1 ATAAATTTAT-AAT
* *
107669 ATAAATTTTTTAT
1 ATAAATTTATAAT
107682 ATAAATTTATAAT
1 ATAAATTTATAAT
107695 A-AAATTTATAAT
1 ATAAATTTATAAT
107707 A
1 A
107708 ATTTAAGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
12 12 0.35
13 19 0.56
14 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (13 bp):
ATAAATTTATAAT
Found at i:107787 original size:21 final size:22
Alignment explanation
Indices: 107761--107803 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
107751 TTTTCTTCCC
107761 TTTCTTTC-ACTTTCTCTATTT
1 TTTCTTTCTACTTTCTCTATTT
*
107782 TTTCTTTCTTCTTTCTCTATTT
1 TTTCTTTCTACTTTCTCTATTT
107804 CTTAATTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTCTTTCTACTTTCTCTATTT
Found at i:107847 original size:11 final size:11
Alignment explanation
Indices: 107831--107888 Score: 61
Period size: 10 Copynumber: 5.5 Consensus size: 11
107821 ATACAACATA
107831 AAAAATTAAT-T
1 AAAAA-TAATAT
107842 AAAAATAATAT
1 AAAAATAATAT
107853 AAAATATAATAT
1 AAAA-ATAATAT
*
107865 -AATAT-ATAT
1 AAAAATAATAT
107874 AAAAAT-ATAT
1 AAAAATAATAT
107884 AAAAA
1 AAAAA
107889 ATAAATTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
9 4 0.10
10 19 0.45
11 12 0.29
12 7 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAAATAATAT
Found at i:107998 original size:232 final size:230
Alignment explanation
Indices: 107569--107999 Score: 534
Period size: 232 Copynumber: 1.9 Consensus size: 230
107559 TTAAACTTTT
* * * *
107569 TTTCTTAATTGAATTTATAAACATAACATAAAAAATTAATTAAAAATAATATAAAAATAATACGA
1 TTTCTTAATTGAATTCACAAACACAACATAAAAAATTAATTAAAAATAATATAAAAATAATACAA
* **
107634 ATATATAAAAATATACAAAAAAATAAATTATCAATATAAATTTTTTATATAAATTTATAATAAAA
66 ATATATAAAAATATACAAAAAAATAAATTATCAATAAAAAAATTTTATATAAATTTATAATAAAA
* * ** * *
107699 TTTATAATAATTTAAGTATAAAAACCACAAGATACAAATTTATATATTTTCCTTTTCTTCCCTTT
131 TTTATAATAATTTAAATATAAAAA-CACAACATACAAACATAAATATTATCCTTTTCTT-CCTTT
107764 CTTTCACTTTCTCTATTTTTTCTTTCTTCTTTCTCTA
194 CTTTCACTTTCTCTATTTTTTCTTTCTTCTTTCTCTA
* *
107801 TTTCTTAATTGAATTCACAAATACAACATAAAAAATTAATTAAAAATAATATAAAATATAATATA
1 TTTCTTAATTGAATTCACAAACACAACATAAAAAATTAATTAAAAATAATATAAAA-ATAATACA
* *
107866 ATATATATAAAAATATA-TAAAAAATAAATTATTAATGTAAAAAAATTTTATATAAATTTATAAT
65 A-ATATATAAAAATATACAAAAAAATAAATTATCAA--TAAAAAAATTTTATATAAATTTATAAT
** *
107930 GATTAGTTTTATAATAATTTAAATATAAAAA-A-ACCATA-AAACATAAATA-TATCCATATTT-
127 -A--AAATTTATAATAATTTAAATATAAAAACACAACATACAAACATAAATATTATCC-T-TTTC
107990 TT-CTTTCTTT
187 TTCCTTTCTTT
108000 TCTCCTTCAT
Statistics
Matches: 170, Mismatches: 20, Indels: 18
0.82 0.10 0.09
Matches are distributed among these distances:
232 60 0.35
233 27 0.16
234 26 0.15
235 31 0.18
236 2 0.01
238 24 0.14
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (230 bp):
TTTCTTAATTGAATTCACAAACACAACATAAAAAATTAATTAAAAATAATATAAAAATAATACAA
ATATATAAAAATATACAAAAAAATAAATTATCAATAAAAAAATTTTATATAAATTTATAATAAAA
TTTATAATAATTTAAATATAAAAACACAACATACAAACATAAATATTATCCTTTTCTTCCTTTCT
TTCACTTTCTCTATTTTTTCTTTCTTCTTTCTCTA
Found at i:108018 original size:22 final size:21
Alignment explanation
Indices: 107993--108051 Score: 52
Period size: 22 Copynumber: 2.8 Consensus size: 21
107983 CATATTTTTC
107993 TTTCTTTTCTCCTTCATTTCTT
1 TTTCTTTT-TCCTTCATTTCTT
*
108015 TTTCCTTATTTTCTT--TCTTCTT
1 TTT-CTT-TTTCCTTCAT-TTCTT
108037 TTTCTTTTT-CTTCAT
1 TTTCTTTTTCCTTCAT
108052 GCCTTTCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 5 0.16
22 11 0.35
23 7 0.23
24 2 0.06
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTCTTTTTCCTTCATTTCTT
Found at i:108027 original size:15 final size:15
Alignment explanation
Indices: 107993--108046 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
107983 CATATTTTTC
107993 TTTCTTTTCTCCTTCA-
1 TTTCTTTT-TCCTT-AT
108009 TTTCTTTTTCCTTAT
1 TTTCTTTTTCCTTAT
108024 TTTCTTTCTT-C-T-T
1 TTTCTTT-TTCCTTAT
108037 TTTCTTTTTC
1 TTTCTTTTTC
108047 TTCATGCCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 8 0.23
14 2 0.06
15 13 0.37
16 10 0.29
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTCTTTTTCCTTAT
Found at i:108034 original size:27 final size:27
Alignment explanation
Indices: 107987--108046 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
107977 TATATCCATA
* *
107987 TTTTTCTTTCTTTTCTCCTTC-ATTTC
1 TTTTTCCTTATTTTCTCCTTCTATTTC
* *
108013 TTTTTCCTTATTTTCTTTCTTCTTTTTC
1 TTTTTCCTTATTTTC-TCCTTCTATTTC
108041 TTTTTC
1 TTTTTC
108047 TTCATGCCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.46
27 5 0.18
28 10 0.36
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTTTCCTTATTTTCTCCTTCTATTTC
Found at i:108348 original size:19 final size:19
Alignment explanation
Indices: 108321--108369 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
108311 AAGTTGATTG
*
108321 ATAATTTTTTATAT-AGGTC
1 ATAAATTTTTATATGA-GTC
108340 ATAAATTTTTATATGAGTC
1 ATAAATTTTTATATGAGTC
*
108359 AAAAATTTTTA
1 ATAAATTTTTA
108370 ATTTTATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (19 bp):
ATAAATTTTTATATGAGTC
Found at i:109249 original size:15 final size:16
Alignment explanation
Indices: 109229--109266 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
109219 TGTCTCTGGG
109229 TAAAAAATATTTT-TT
1 TAAAAAATATTTTATT
109244 TAAAAAATATTTTATT
1 TAAAAAATATTTTATT
*
109260 TTAAAAA
1 TAAAAAA
109267 CAAATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAAAAATATTTTATT
Found at i:109512 original size:2 final size:2
Alignment explanation
Indices: 109505--109536 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
109495 AAATGCCAAA
109505 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
109537 TATGATAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111763 original size:20 final size:19
Alignment explanation
Indices: 111727--111791 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
111717 GTTTGAGTTT
*
111727 TTAATTT-TTATATTTTAAA
1 TTAATTTATT-TAATTTAAA
111746 TTAAATTTATTTAATTTAAA
1 TT-AATTTATTTAATTTAAA
* * *
111766 ATAATATATTTTATTTAAA
1 TTAATTTATTTAATTTAAA
111785 TTTAATT
1 -TTAATT
111792 ATAAAATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
19 17 0.46
20 18 0.49
21 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTAATTTATTTAATTTAAA
Found at i:112153 original size:23 final size:24
Alignment explanation
Indices: 112099--112153 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
112089 TTCTCTTCTC
*
112099 TTCTCTCTCTTTTGTTGCCTCCCT
1 TTCTCTCTCCTTTGTTGCCTCCCT
* * *
112123 TT-TTTCTCCTTTGTT-TCTCGCT
1 TTCTCTCTCCTTTGTTGCCTCCCT
112145 TTCTCTCTC
1 TTCTCTCTC
112154 TGGAATCTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 7 0.28
23 16 0.64
24 2 0.08
ACGTcount: A:0.00, C:0.35, G:0.07, T:0.58
Consensus pattern (24 bp):
TTCTCTCTCCTTTGTTGCCTCCCT
Found at i:114382 original size:51 final size:50
Alignment explanation
Indices: 114321--114470 Score: 250
Period size: 51 Copynumber: 3.0 Consensus size: 50
114311 AACTGCTACG
114321 TTTTTTATATTTCCATTTTAAGTATGAAGTGTTTGGAACATGTTTTTGTT
1 TTTTTTATATTTCCATTTTAAGTATGAAGTGTTTGGAACATGTTTTTGTT
* *
114371 TTTTTTAATATTTCCATTTTAAGTATGACGCTTTTTGGAACATGTTTTTG-T
1 TTTTTT-ATATTTCCATTTTAAGTATGAAG-TGTTTGGAACATGTTTTTGTT
114422 TTTTTT-TATTTCCATTTTAAGTATGAAGTGTTTGGAACATGTTTTTGTT
1 TTTTTTATATTTCCATTTTAAGTATGAAGTGTTTGGAACATGTTTTTGTT
114471 ATTCTTTCTT
Statistics
Matches: 93, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
48 18 0.19
49 22 0.24
50 6 0.06
51 29 0.31
52 18 0.19
ACGTcount: A:0.21, C:0.07, G:0.15, T:0.56
Consensus pattern (50 bp):
TTTTTTATATTTCCATTTTAAGTATGAAGTGTTTGGAACATGTTTTTGTT
Found at i:121439 original size:2 final size:2
Alignment explanation
Indices: 121432--121459 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
121422 GGTAAGAAAC
121432 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121460 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122064 original size:19 final size:19
Alignment explanation
Indices: 122023--122068 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
122013 ACAACCTAAA
*
122023 CTTGATCTTTTATAAATCT
1 CTTGATATTTTATAAATCT
*
122042 CTTGATATTTTATTCAATC-
1 CTTGATATTTTA-TAAATCT
122061 CTTGATAT
1 CTTGATAT
122069 GAAACAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (19 bp):
CTTGATATTTTATAAATCT
Found at i:123214 original size:16 final size:16
Alignment explanation
Indices: 123193--123239 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
123183 TTTAATTATT
123193 TATTATATTATTAAAA
1 TATTATATTATTAAAA
* **
123209 TATTATTTTATTTTAA
1 TATTATATTATTAAAA
*
123225 TATTTTATTATTAAA
1 TATTATATTATTAAA
123240 TTTAAATAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTATATTATTAAAA
Found at i:123413 original size:3 final size:3
Alignment explanation
Indices: 123398--123427 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
123388 ATAACAAATA
123398 TAT TAT ATAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TA
123428 CTTTTTTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:123605 original size:27 final size:28
Alignment explanation
Indices: 123575--123651 Score: 68
Period size: 32 Copynumber: 2.6 Consensus size: 28
123565 ATATATTTAT
*
123575 ATATATAAATATTTTAAAATTTACATA-
1 ATATATAAATATATTAAAATTTACATAG
*
123602 ATATAAATTATTAATATATTAAAATTTATATAG
1 ATAT--A-TA--AATATATTAAAATTTACATAG
*
123635 ATAT-TAAATATCTTAAA
1 ATATATAAATATATTAAA
123652 TATAATTCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
27 14 0.34
29 3 0.07
30 2 0.05
32 18 0.44
33 4 0.10
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (28 bp):
ATATATAAATATATTAAAATTTACATAG
Found at i:123615 original size:24 final size:24
Alignment explanation
Indices: 123569--123615 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
123559 ATATAGATAT
* *
123569 ATTTATATATATAAATATTTTAAA
1 ATTTACATATATAAATATATTAAA
123593 ATTTACATAATATAAAT-TATTAA
1 ATTTACAT-ATATAAATATATTAA
123616 TATATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTTACATATATAAATATATTAAA
Found at i:123785 original size:6 final size:6
Alignment explanation
Indices: 123774--123804 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
123764 TATATCAATT
123774 ATATAA ATATAA ATATAA ATA-AA ATATAA AT
1 ATATAA ATATAA ATATAA ATATAA ATATAA AT
123805 TATTAAATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATATAA
Found at i:124739 original size:2 final size:2
Alignment explanation
Indices: 124732--124767 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
124722 TTTCATATTT
124732 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
124768 AAACTTAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125323 original size:50 final size:50
Alignment explanation
Indices: 125260--125358 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
125250 TTTATTCTCA
* **
125260 AAGTGAATTGATTCGACTCGAGTTAAATTAACTGAAA-TTCAGTAAACTCG
1 AAGTGAATCGATTCGACTCGAACTAAATTAA-TGAAAGTTCAGTAAACTCG
* *
125310 AAGTGAATCGATTCGACTCGAACTGAATTAATTAAAGTTCAGTAAACTC
1 AAGTGAATCGATTCGACTCGAACTAAATTAATGAAAGTTCAGTAAACTC
125359 TCGCATGCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 4 0.09
50 39 0.91
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (50 bp):
AAGTGAATCGATTCGACTCGAACTAAATTAATGAAAGTTCAGTAAACTCG
Found at i:126335 original size:2 final size:2
Alignment explanation
Indices: 126328--126356 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
126318 GTGAATATGC
126328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126357 GAGCAAGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126988 original size:28 final size:27
Alignment explanation
Indices: 126956--127008 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
126946 ATATTTAATT
126956 TTTA-TATAAAATAATAAATATTAAAAAA
1 TTTATTAT-AAATAATAAAT-TTAAAAAA
*
126984 TTTATTATCAATAATAAATTTAAAA
1 TTTATTATAAATAATAAATTTAAAA
127009 GAGATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.26
28 14 0.61
29 3 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
TTTATTATAAATAATAAATTTAAAAAA
Found at i:129260 original size:13 final size:13
Alignment explanation
Indices: 129242--129267 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
129232 CAATTTTTTG
129242 TGTATCGATACAT
1 TGTATCGATACAT
129255 TGTATCGATACAT
1 TGTATCGATACAT
129268 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:129390 original size:20 final size:20
Alignment explanation
Indices: 129338--129392 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
129328 CATCTTTTTT
*
129338 ATGTATCGATACATTGCAAC
1 ATGTATCGATACTTTGCAAC
129358 ATGTATCGATACTTTG-AAC
1 ATGTATCGATACTTTGCAAC
*
129377 TGTGTATCGATACTTT
1 -ATGTATCGATACTTT
129393 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAC
Found at i:131838 original size:13 final size:13
Alignment explanation
Indices: 131820--131844 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131810 ATAATCCCCC
131820 TGTATCGATACAT
1 TGTATCGATACAT
131833 TGTATCGATACA
1 TGTATCGATACA
131845 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:133944 original size:15 final size:15
Alignment explanation
Indices: 133924--133954 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
133914 ATTTCGTTTG
*
133924 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
133939 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
133954 G
1 G
133955 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:135792 original size:22 final size:20
Alignment explanation
Indices: 135744--135792 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 20
135734 TATGCAAGTT
*
135744 TTTATTTTCTTAGCTAACTC
1 TTTATTTTCTTAGCAAACTC
* *
135764 ATTATTTTCATTAGCCAAATTC
1 TTTATTTTC-TTAG-CAAACTC
135786 TTTATTT
1 TTTATTT
135793 CAACTTGCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 8 0.35
21 4 0.17
22 11 0.48
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.55
Consensus pattern (20 bp):
TTTATTTTCTTAGCAAACTC
Found at i:138017 original size:13 final size:13
Alignment explanation
Indices: 137999--138024 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
137989 CAATTTTTTG
137999 TGTATCGATACAT
1 TGTATCGATACAT
138012 TGTATCGATACAT
1 TGTATCGATACAT
138025 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Done.