Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold35
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4812169
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 17994 characters in sequence are not A, C, G, or T
File 22 of 30
Found at i:3477377 original size:13 final size:13
Alignment explanation
Indices: 3477359--3477388 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3477349 TAAAATTAAT
3477359 TAATTAAAAAGAA
1 TAATTAAAAAGAA
*
3477372 TAATTAAAAATAA
1 TAATTAAAAAGAA
3477385 TAAT
1 TAAT
3477389 AATAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
TAATTAAAAAGAA
Found at i:3479216 original size:43 final size:44
Alignment explanation
Indices: 3479142--3479243 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 44
3479132 AGCAAGGCTA
** *
3479142 AACCATCACGTCAAATGAAAGTGAATTGAGTTTGACCAGGG-AG
1 AACCATCACGTCAAATGAAAGTGAAAGGAGTTTAACCAGGGTAG
* * * * *
3479185 AACTATCACGTCCAATGAAATTTAAAGGAGTTTAACCGGGGTAG
1 AACCATCACGTCAAATGAAAGTGAAAGGAGTTTAACCAGGGTAG
*
3479229 AACCATCACATCAAA
1 AACCATCACGTCAAA
3479244 CAGAATGAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
43 33 0.70
44 14 0.30
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.22
Consensus pattern (44 bp):
AACCATCACGTCAAATGAAAGTGAAAGGAGTTTAACCAGGGTAG
Found at i:3479341 original size:45 final size:44
Alignment explanation
Indices: 3479279--3479466 Score: 155
Period size: 45 Copynumber: 4.4 Consensus size: 44
3479269 CAATCAAATA
*
3479279 GGAATGAAAAAATGTTTGACTAGGGCGAGAACCATCACGTCAAAC
1 GGAATCAAAAAA-GTTTGACTAGGGCGAGAACCATCACGTCAAAC
*
3479324 GGTAAT-AAAAAGAGTTTGAC-----C-AGAA--AT-A-GTCAAATA
1 GG-AATCAAAAA-AGTTTGACTAGGGCGAGAACCATCACGTCAAA-C
* * *
3479360 GGAATGAAAAAAGTTTGACCAGGGTGAGAACCATCACGTCAAAC
1 GGAATCAAAAAAGTTTGACTAGGGCGAGAACCATCACGTCAAAC
* * * * *
3479404 AAGAATGAAAAGAGTTTGACTAGGGCAAGAACCATCACGTTAAAC
1 -GGAATCAAAAAAGTTTGACTAGGGCGAGAACCATCACGTCAAAC
3479449 GAGAATCAAAAAAGTTTG
1 G-GAATCAAAAAAGTTTG
3479467 GTCGGGTACA
Statistics
Matches: 115, Mismatches: 12, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
35 17 0.15
36 8 0.07
37 2 0.02
39 4 0.03
40 1 0.01
41 4 0.03
43 2 0.02
44 1 0.01
45 72 0.63
46 4 0.03
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (44 bp):
GGAATCAAAAAAGTTTGACTAGGGCGAGAACCATCACGTCAAAC
Found at i:3479391 original size:80 final size:81
Alignment explanation
Indices: 3479272--3479423 Score: 245
Period size: 80 Copynumber: 1.9 Consensus size: 81
3479262 TCAAATACAA
* *
3479272 TCAAATAGGAATGAAAAAATGTTTGACTAGGGCGAGAACCATCACGTCAAAC-GGTAATAAAAAG
1 TCAAATAGGAATGAAAAAATGTTTGACCAGGGCGAGAACCATCACGTCAAACAAG-AATAAAAAG
3479336 AGTTTGACCAGAAATAG
65 AGTTTGACCAGAAATAG
* *
3479353 TCAAATAGGAATGAAAAAA-GTTTGACCAGGGTGAGAACCATCACGTCAAACAAGAATGAAAAGA
1 TCAAATAGGAATGAAAAAATGTTTGACCAGGGCGAGAACCATCACGTCAAACAAGAATAAAAAGA
3479417 GTTTGAC
66 GTTTGAC
3479424 TAGGGCAAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
80 46 0.70
81 20 0.30
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.19
Consensus pattern (81 bp):
TCAAATAGGAATGAAAAAATGTTTGACCAGGGCGAGAACCATCACGTCAAACAAGAATAAAAAGA
GTTTGACCAGAAATAG
Found at i:3479440 original size:125 final size:125
Alignment explanation
Indices: 3479280--3479506 Score: 307
Period size: 125 Copynumber: 1.8 Consensus size: 125
3479270 AATCAAATAG
*
3479280 GAATGAAAAAATGTTTGACTAGGGCGAGAACCATCACGTCAAACG-GTAAT-AAAAAGAGTTTGA
1 GAATGAAAAAATGTTTGACTAGGGCAAGAACCATCACGTCAAACGAG-AATCAAAAA-AGTTTGA
*
3479343 CCAGAAATAGTCAAATAGGAATGAAAAAAGTTTGACCAGGGTGAGAACCATCACGTCAAACAA
64 CCAGAAACAGTCAAATAGGAAT-AAAAAAGTTTGACCAGGGTGAGAACCATCACGTCAAACAA
* * **
3479406 GAATGAAAAGA-GTTTGACTAGGGCAAGAACCATCACGTTAAACGAGAATCAAAAAAGTTTGGTC
1 GAATGAAAAAATGTTTGACTAGGGCAAGAACCATCACGTCAAACGAGAATCAAAAAAGTTTGACC
* ** * *
3479470 GGGTACAGTTAAATAGGAATAAAAGAGTTTGACCAGG
66 AGAAACAGTCAAATAGGAATAAAAAAGTTTGACCAGG
3479507 TATAGTCAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
124 16 0.18
125 56 0.64
126 16 0.18
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (125 bp):
GAATGAAAAAATGTTTGACTAGGGCAAGAACCATCACGTCAAACGAGAATCAAAAAAGTTTGACC
AGAAACAGTCAAATAGGAATAAAAAAGTTTGACCAGGGTGAGAACCATCACGTCAAACAA
Found at i:3479537 original size:36 final size:35
Alignment explanation
Indices: 3479480--3479574 Score: 140
Period size: 36 Copynumber: 2.7 Consensus size: 35
3479470 GGGTACAGTT
*
3479480 AAATAGGAAT-AAAAGA-GTTTGACCAGGTATAGTC
1 AAAT-GGAATGAAAAGATGTTTGACCAAGTATAGTC
3479514 AAATGAGAATGAAAAGATGTTTGACCAAGTATAGTC
1 AAATG-GAATGAAAAGATGTTTGACCAAGTATAGTC
3479550 AAATGGAAATGAAAAGATGTTTGAC
1 AAATGG-AATGAAAAGATGTTTGAC
3479575 TAGGGTGAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
33 1 0.02
34 8 0.14
35 7 0.12
36 40 0.71
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.24
Consensus pattern (35 bp):
AAATGGAATGAAAAGATGTTTGACCAAGTATAGTC
Found at i:3479656 original size:46 final size:46
Alignment explanation
Indices: 3479555--3479665 Score: 154
Period size: 46 Copynumber: 2.4 Consensus size: 46
3479545 TAGTCAAATG
* * *
3479555 GAAATGAAAAGATGTTTGACTAGGGTGAGAACCATCACGTTAAATAT
1 GAAA-GAAAAGATGTTTGACTAGGGTGAGAACCATCAAGTGAAACAT
*
3479602 GAATGAAAAGATGTTTGACTAGGGTGAGAACCATCAAGTGAAACA-
1 GAAAGAAAAGATGTTTGACTAGGGTGAGAACCATCAAGTGAAACAT
3479647 GTAAAGAAAAGA-GTTTGAC
1 G-AAAGAAAAGATGTTTGAC
3479666 CAAATACAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
45 8 0.14
46 47 0.81
47 3 0.05
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (46 bp):
GAAAGAAAAGATGTTTGACTAGGGTGAGAACCATCAAGTGAAACAT
Found at i:3483203 original size:13 final size:13
Alignment explanation
Indices: 3483185--3483212 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3483175 ATACAAAGAT
3483185 CAATGTATCGATA
1 CAATGTATCGATA
3483198 CAATGTATCGATA
1 CAATGTATCGATA
3483211 CA
1 CA
3483213 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3483209 original size:33 final size:33
Alignment explanation
Indices: 3483167--3483232 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3483157 AAATTCCTAG
3483167 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
**
3483200 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
3483233 TTTCCTTGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:3484383 original size:21 final size:22
Alignment explanation
Indices: 3484343--3484383 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
3484333 TATTATGCCT
* *
3484343 ATGCTTTAGTCCATTTTTTCTA
1 ATGCTTGAGTCCATTCTTTCTA
3484365 ATGCTTGAGT-CATTCTTTC
1 ATGCTTGAGTCCATTCTTTC
3484384 GGGTTTTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (22 bp):
ATGCTTGAGTCCATTCTTTCTA
Found at i:3494552 original size:21 final size:20
Alignment explanation
Indices: 3494522--3494572 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
3494512 TTTTATAATT
*
3494522 TGTATTGATACATTAAGTGAA
1 TGTATTGATACA-TAAGAGAA
*
3494543 TGTATCGATACATAAGAGAA
1 TGTATTGATACATAAGAGAA
*
3494563 TATATTGATA
1 TGTATTGATA
3494573 TATTTCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (20 bp):
TGTATTGATACATAAGAGAA
Found at i:3494563 original size:20 final size:21
Alignment explanation
Indices: 3494522--3494595 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 21
3494512 TTTTATAATT
* *
3494522 TGTATTGATACATTAAGTGAA
1 TGTATCGATACATTAAGAGAA
3494543 TGTATCGATACA-TAAGAGAA
1 TGTATCGATACATTAAGAGAA
* * * *** *
3494563 TATATTGATATATTTCTAAAA
1 TGTATCGATACATTAAGAGAA
3494584 TGTATCGATACA
1 TGTATCGATACA
3494596 GGACCATGTC
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 16 0.40
21 24 0.60
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTAAGAGAA
Found at i:3494977 original size:20 final size:20
Alignment explanation
Indices: 3494954--3495027 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
3494944 ACAATTCAAA
3494954 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3494974 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
3494995 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3495015 GTATCGATACATG
1 GTATCGATACATG
3495028 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3494998 original size:21 final size:21
Alignment explanation
Indices: 3494972--3495047 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
3494962 ACATGTTGCA
3494972 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
3494993 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
3495013 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
3495034 ATGTATCGATACAT
1 ATGTATCGATACAT
3495048 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:3495005 original size:41 final size:41
Alignment explanation
Indices: 3494954--3495047 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
3494944 ACAATTCAAA
3494954 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
3494995 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
3495036 GTATCGATACAT
1 GTATCGATACAT
3495048 TTCTTGGCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:3495104 original size:13 final size:13
Alignment explanation
Indices: 3495086--3495111 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3495076 TACAGCAAGT
3495086 ATGTATCGATACA
1 ATGTATCGATACA
3495099 ATGTATCGATACA
1 ATGTATCGATACA
3495112 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3497358 original size:21 final size:21
Alignment explanation
Indices: 3497325--3497369 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3497315 TTGCAAGTTG
*
3497325 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
3497347 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
3497367 AAA
1 AAA
3497370 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:3501296 original size:20 final size:20
Alignment explanation
Indices: 3501217--3501296 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
3501207 AATGTCCAAA
*
3501217 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
3501237 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
3501262 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
3501282 TTGTATCGATACATT
1 ATGTATCGATACATT
3501297 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:3501300 original size:13 final size:13
Alignment explanation
Indices: 3501282--3501320 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3501272 ACATTTTTCT
3501282 TTGTATCGATACA
1 TTGTATCGATACA
3501295 TTGTATCGATACA
1 TTGTATCGATACA
*
3501308 CTGTATCGATACA
1 TTGTATCGATACA
3501321 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3503793 original size:20 final size:20
Alignment explanation
Indices: 3503770--3503842 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3503760 ACAATTCAAA
3503770 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3503790 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
3503811 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3503831 GTATCGATACAT
1 GTATCGATACAT
3503843 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3503814 original size:21 final size:21
Alignment explanation
Indices: 3503788--3503863 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
3503778 ACATGTTGCA
3503788 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
3503809 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
3503829 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
3503850 ATGTATCGATACAT
1 ATGTATCGATACAT
3503864 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:3503821 original size:41 final size:41
Alignment explanation
Indices: 3503770--3503863 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
3503760 ACAATTCAAA
*
3503770 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
3503811 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
3503852 GTATCGATACAT
1 GTATCGATACAT
3503864 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:3503920 original size:13 final size:13
Alignment explanation
Indices: 3503902--3503927 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3503892 TACAGCAAGT
3503902 ATGTATCGATACA
1 ATGTATCGATACA
3503915 ATGTATCGATACA
1 ATGTATCGATACA
3503928 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3506433 original size:79 final size:77
Alignment explanation
Indices: 3506330--3506627 Score: 336
Period size: 79 Copynumber: 3.8 Consensus size: 77
3506320 ATAATGGGGC
* * *
3506330 TGGAGTATCCCCTGATTATGGAAAATCGGTGTTCTGAAAATAAAATCGGGGTTGGAGTATCTCCT
1 TGGAGTAT-CCCTGATTATGAAAAATCGATGTT-TGAAAATAAAATCGGGGTTGGAGTATCCCCT
*
3506395 CGAAAATAATAGGGT
64 CGAAAATAA-CGGGT
* *
3506410 TAGAGCATCCCTGATTAT-AGAAAATCGGCAT-TTTGAAAATAAAATCGGGGTTGGAGTATCCCC
1 TGGAGTATCCCTGATTATGA-AAAATC-G-ATGTTTGAAAATAAAATCGGGGTTGGAGTATCCCC
3506473 TCGAAAATAACGAGGT
63 TCGAAAATAACG-GGT
* * **
3506489 TGGAGTAT-CCTCGATTGTGAAAAATCGAAGCTTT-AGAAATAAGGTCGGGGTTGGAGTATCCCC
1 TGGAGTATCCCT-GATTATGAAAAATCGATG-TTTGA-AAATAAAATCGGGGTTGGAGTATCCCC
3506552 TC-AGAAATAACGGGTT
63 TCGA-AAATAACGGG-T
* * *
3506568 TGGAGTATCCCCGATTATGAAAAATTGATGTTTGAAAATAAAATCGGGGTTAGAGTATCC
1 TGGAGTATCCCTGATTATGAAAAATCGATGTTTGAAAATAAAATCGGGGTTGGAGTATCC
3506628 TCGAGATGAA
Statistics
Matches: 186, Mismatches: 19, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
77 1 0.01
78 34 0.18
79 138 0.74
80 12 0.06
81 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (77 bp):
TGGAGTATCCCTGATTATGAAAAATCGATGTTTGAAAATAAAATCGGGGTTGGAGTATCCCCTCG
AAAATAACGGGT
Found at i:3506640 original size:49 final size:50
Alignment explanation
Indices: 3506570--3506692 Score: 158
Period size: 50 Copynumber: 2.5 Consensus size: 50
3506560 AACGGGTTTG
* ** * *
3506570 GAGTATCCCCGATTATGAAAAATTGATGTTTGA-AAATAAAATCGGGGTTA
1 GAGTATCCCCGA-GATGAAAAATCAATATTTGAGAAATAAAACCGGGGTTA
* * *
3506620 GAGTATCCTCGAGATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTG
1 GAGTATCCCCGAGATGAAAAATCAATATTTGAGAAATAAAACCGGGGTTA
3506670 GAGTATCCCCGAGATGAAAAATC
1 GAGTATCCCCGAGATGAAAAATC
3506693 TAGAAATTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
49 15 0.24
50 48 0.76
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (50 bp):
GAGTATCCCCGAGATGAAAAATCAATATTTGAGAAATAAAACCGGGGTTA
Found at i:3513765 original size:17 final size:18
Alignment explanation
Indices: 3513729--3513766 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
3513719 TTTTGCCAAA
3513729 ATAAAATATAATAATAATT
1 ATAAAATATAAT-ATAATT
*
3513748 ATAAAATTTAAT-TAATT
1 ATAAAATATAATATAATT
3513765 AT
1 AT
3513767 TTATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
19 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAATATAATATAATT
Found at i:3519670 original size:29 final size:29
Alignment explanation
Indices: 3519638--3519721 Score: 68
Period size: 29 Copynumber: 2.9 Consensus size: 29
3519628 ATAAAAGTCT
3519638 TAAAACATGGTAAATTACTAAAATGA-CCC
1 TAAAACATGG-AAATTACTAAAATGAGCCC
* * *
3519667 TAAAATGCAT-GAAATTGC-ATAAA-GAGTCT
1 TAAAA--CATGGAAATTACTA-AAATGAGCCC
3519696 TAAAACATGGCAAATTACTAAAATGA
1 TAAAACATGG-AAATTACTAAAATGA
3519722 TGCAAAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 15
0.69 0.06 0.24
Matches are distributed among these distances:
27 3 0.07
28 4 0.09
29 29 0.67
30 4 0.09
31 3 0.07
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.25
Consensus pattern (29 bp):
TAAAACATGGAAATTACTAAAATGAGCCC
Found at i:3519716 original size:58 final size:58
Alignment explanation
Indices: 3519621--3519977 Score: 241
Period size: 58 Copynumber: 6.2 Consensus size: 58
3519611 AAACAAAATT
* * *
3519621 AAATTCCATAAA-AGTCTTAAAACATGGTAAATTACTAAAATGACCCTAAAATGCATG
1 AAATTGCATAAAGAGTCTTAAAACATGGCAAATTACTAAAATGATCCTAAAATGCATG
* * ** *
3519678 AAATTGCATAAAGAGTCTTAAAACATGGCAAATTACTAAAATGATGCAAAAATATATA
1 AAATTGCATAAAGAGTCTTAAAACATGGCAAATTACTAAAATGATCCTAAAATGCATG
* * * * ** * * *
3519736 AAATTACGT-AATA-TCCCTTAAATCATGAAAAAGTACTAGAATGAGCCTAAAATGCATG
1 AAATTGCATAAAGAGT--CTTAAAACATGGCAAATTACTAAAATGATCCTAAAATGCATG
* * * *
3519794 AAATTGTATAAATGA-TC-CAAATACAAGGCAAATTACTAAAATGATGC-AAAAGTGCATG
1 AAATTGCATAAA-GAGTCTTAAA-ACATGGCAAATTACTAAAATGATCCTAAAA-TGCATG
** * * ** * *
3519852 AAA-TGC-TAATTA-AACCCTAAATCATGAAAAATTACTAAAATGACCCAAAAATGCATG
1 AAATTGCATAA--AGAGTCTTAAAACATGGCAAATTACTAAAATGATCCTAAAATGCATG
* * * * * *
3519909 AAATTGTAT-AAGTGGTCCTAAAACATGGCAAATTACTAGAATTG-TCTTAAAATGCATA
1 AAATTGCATAAAG-AGTCTTAAAACATGGCAAATTACTA-AAATGATCCTAAAATGCATG
3519967 AAATTGCATAA
1 AAATTGCATAA
3519978 TAACCTTTAA
Statistics
Matches: 225, Mismatches: 57, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
56 6 0.03
57 52 0.23
58 157 0.70
59 8 0.04
60 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.13, T:0.26
Consensus pattern (58 bp):
AAATTGCATAAAGAGTCTTAAAACATGGCAAATTACTAAAATGATCCTAAAATGCATG
Found at i:3519792 original size:116 final size:114
Alignment explanation
Indices: 3519653--3519946 Score: 362
Period size: 116 Copynumber: 2.5 Consensus size: 114
3519643 CATGGTAAAT
*
3519653 TACTAAAATGACCCTAAAATGCATGAAATTGCATAAAGAGTCTTAAAACATGGCAAATTACTAAA
1 TACTAAAATGACCCTAAAATGCATGAAATTGTATAAAGAGTC-TAAAACATGGCAAATTACTAAA
* *
3519718 ATGATGCAAAAATATATAAAATTACGTAA-T-ATCCCTTAAATCATGAAAAAG
65 ATGATGCAAAAATACATAAAA-TAC-TAATTAAACCC-TAAATCATGAAAAAG
* * * *
3519769 TACTAGAATGAGCCTAAAATGCATGAAATTGTATAAATGA-TCCAAATACAAGGCAAATTACTAA
1 TACTAAAATGACCCTAAAATGCATGAAATTGTATAAA-GAGTCTAAA-ACATGGCAAATTACTAA
* * * * *
3519833 AATGATGCAAAAGTGCATGAAATGCTAATTAAACCCTAAATCATGAAAAAT
64 AATGATGCAAAAATACATAAAATACTAATTAAACCCTAAATCATGAAAAAG
* *
3519884 TACTAAAATGACCCAAAAATGCATGAAATTGTAT-AAGTGGTCCTAAAACATGGCAAATTACTA
1 TACTAAAATGACCCTAAAATGCATGAAATTGTATAAAG-AGT-CTAAAACATGGCAAATTACTA
3519947 GAATTGTCTT
Statistics
Matches: 153, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
113 1 0.01
114 5 0.03
115 67 0.44
116 78 0.51
117 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.13, T:0.25
Consensus pattern (114 bp):
TACTAAAATGACCCTAAAATGCATGAAATTGTATAAAGAGTCTAAAACATGGCAAATTACTAAAA
TGATGCAAAAATACATAAAATACTAATTAAACCCTAAATCATGAAAAAG
Found at i:3520102 original size:58 final size:58
Alignment explanation
Indices: 3520059--3520417 Score: 311
Period size: 58 Copynumber: 6.3 Consensus size: 58
3520049 AAATGATGCA
* * * *
3520059 AAAATGCATGAAATTACATAATAACGCATAAATCATGGCAAATTACTAAAATAACCCA
1 AAAATGCATGAAATTACATAATAACGCTTAAATCATGGAAAATTACTAAAATGACCCT
* * * * *
3520117 AAAATGTATGAAATTATATAAGT--GGTCTTAAAACATGGCAAATTACTAAAATGACCCT
1 AAAATGCATGAAATTACATAA-TAACG-CTTAAATCATGGAAAATTACTAAAATGACCCT
* * * * ***
3520175 AAAATGAATGAAAGTACTTAATAACTCTTAAATCAAAAAAAATTACTAAAATG-CCCT
1 AAAATGCATGAAATTACATAATAACGCTTAAATCATGGAAAATTACTAAAATGACCCT
* * * * * * *
3520232 AAAATGAATGAAAGTACTTAATAACTCTTAAATCAAGAAAAATTACTGAAATGACCCT
1 AAAATGCATGAAATTACATAATAACGCTTAAATCATGGAAAATTACTAAAATGACCCT
* * ** * ** **
3520290 AAAATCCATGAAATTGCATAA-ATGGCCTTAAAACATGTCAAATTACTAAAATGATGC-
1 AAAATGCATGAAATTACATAATAACG-CTTAAATCATGGAAAATTACTAAAATGACCCT
* * *
3520347 AAAATGCATGAAATCACATTATAAC-TTATAAATCATGGAAAATTACTAAAATGA-CCT
1 AAAATGCATGAAATTACATAATAACGCT-TAAATCATGGAAAATTACTAAAATGACCCT
3520404 -AAATGCATGAAATT
1 AAAATGCATGAAATT
3520418 GTATAAATGG
Statistics
Matches: 245, Mismatches: 47, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
56 15 0.06
57 98 0.40
58 131 0.53
59 1 0.00
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.26
Consensus pattern (58 bp):
AAAATGCATGAAATTACATAATAACGCTTAAATCATGGAAAATTACTAAAATGACCCT
Found at i:3520130 original size:29 final size:28
Alignment explanation
Indices: 3520057--3520132 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
3520047 GAAAATGATG
* *
3520057 CAAAAATGCATGAAATTACATAATAACG
1 CAAAAATGCATGAAATTACAAAATAACC
*
3520085 CATAAAT-CATGGCAAATTACTAAAATAACC
1 CAAAAATGCAT-G-AAATTAC-AAAATAACC
*
3520115 CAAAAATGTATGAAATTA
1 CAAAAATGCATGAAATTA
3520133 TATAAGTGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 3 0.08
28 7 0.18
29 13 0.33
30 14 0.36
31 2 0.05
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.24
Consensus pattern (28 bp):
CAAAAATGCATGAAATTACAAAATAACC
Found at i:3520169 original size:116 final size:115
Alignment explanation
Indices: 3520023--3520244 Score: 266
Period size: 116 Copynumber: 1.9 Consensus size: 115
3520013 ATTACGTAAA
* ** * *
3520023 TGGTCTTAAAACAAGGTAAATTATGAAAATGATGCAAAAATGCATGAAATTACATAATAACGCAT
1 TGGTCTTAAAACAAGGCAAATTATGAAAATGACCCAAAAATGAATGAAAGTACATAATAACGCAT
**** *
3520088 AAATCATGGCAAATTACTAAAATAACCCAAAAATGTATGAAATTATATAAG
66 AAATCAAAAAAAATTACTAAAAT-ACCCAAAAATGAATGAAATTATATAAG
* * * * *
3520139 TGGTCTTAAAACATGGCAAATTACT-AAAATGACCCTAAAATGAATGAAAGTACTTAATAACTCT
1 TGGTCTTAAAACAAGGCAAATTA-TGAAAATGACCCAAAAATGAATGAAAGTACATAATAACGCA
* *
3520203 TAAATCAAAAAAAATTACTAAAATGCCCTAAAATGAATGAAA
65 TAAATCAAAAAAAATTACTAAAATACCCAAAAATGAATGAAA
3520245 GTACTTAATA
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
115 15 0.17
116 72 0.82
117 1 0.01
ACGTcount: A:0.50, C:0.13, G:0.12, T:0.26
Consensus pattern (115 bp):
TGGTCTTAAAACAAGGCAAATTATGAAAATGACCCAAAAATGAATGAAAGTACATAATAACGCAT
AAATCAAAAAAAATTACTAAAATACCCAAAAATGAATGAAATTATATAAG
Found at i:3520192 original size:29 final size:29
Alignment explanation
Indices: 3520160--3520249 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 29
3520150 CATGGCAAAT
3520160 TACTAAAATGACCCTAAAATGAATGAAAG
1 TACTAAAATGACCCTAAAATGAATGAAAG
* * * * * ** *
3520189 TACT-TAATAACTCTTAAATCAAAAAAAAT
1 TACTAAAATGACCCTAAAAT-GAATGAAAG
3520218 TACTAAAATG-CCCTAAAATGAATGAAAG
1 TACTAAAATGACCCTAAAATGAATGAAAG
3520246 TACT
1 TACT
3520250 TAATAACTCT
Statistics
Matches: 43, Mismatches: 16, Indels: 5
0.67 0.25 0.08
Matches are distributed among these distances:
28 20 0.47
29 20 0.47
30 3 0.07
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (29 bp):
TACTAAAATGACCCTAAAATGAATGAAAG
Found at i:3520226 original size:218 final size:217
Alignment explanation
Indices: 3519816--3520227 Score: 530
Period size: 218 Copynumber: 1.9 Consensus size: 217
3519806 TGATCCAAAT
* * *
3519816 ACAAGGCAAATTACTAAAATGATGCAAAAGTGCATGAAATGCTAATTAAACCCTAAATCATGAAA
1 ACAAGGCAAATTACTAAAATGATGCAAAAATGCATGAAATACTAATTAAACCATAAATCATGAAA
* *
3519881 AATTACTAAAATGACCCAAAAATGCATGAAATTGTATAAGTGGTCCTAAAACATGGCAAATTACT
66 AATTACTAAAATAACCCAAAAATGCATGAAATTATATAAGTGGTCCTAAAACATGGCAAATTACT
* * * * * * * * *
3519946 AGAATTGTCTTAAAATGCATAAAATTGCATAATAACCTTTAAATAATGAAAATTTTCTAAAATGG
131 AGAAATGCCCTAAAATGAATAAAAGTACATAATAACCTTTAAATAATAAAAAATTACTAAAATGG
3520011 TCATTACGTAAATGGTCTTAAA
196 TCATTACGTAAATGGTCTTAAA
*
3520033 ACAAGGTAAATTA-TGAAAATGATGCAAAAATGCATGAAATTACATAA-T-AACGCATAAATCAT
1 ACAAGGCAAATTACT-AAAATGATGCAAAAATGCATGAAA-TAC-TAATTAAAC-CATAAATCAT
** * *
3520095 GGCAAATTACTAAAATAACCCAAAAATGTATGAAATTATATAAGTGGTCTTAAAACATGGCAAAT
62 GAAAAATTACTAAAATAACCCAAAAATGCATGAAATTATATAAGTGGTCCTAAAACATGGCAAAT
* *
3520160 TACTA-AAATGACCCTAAAATGAATGAAAGTACTTAATAA-CTCTTAAATCAA-AAAAAATTACT
127 TACTAGAAATG-CCCTAAAATGAATAAAAGTACATAATAACCT-TTAAAT-AATAAAAAATTACT
3520222 AAAATG
189 AAAATG
3520228 CCCTAAAATG
Statistics
Matches: 167, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
216 1 0.01
217 44 0.26
218 117 0.70
219 5 0.03
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (217 bp):
ACAAGGCAAATTACTAAAATGATGCAAAAATGCATGAAATACTAATTAAACCATAAATCATGAAA
AATTACTAAAATAACCCAAAAATGCATGAAATTATATAAGTGGTCCTAAAACATGGCAAATTACT
AGAAATGCCCTAAAATGAATAAAAGTACATAATAACCTTTAAATAATAAAAAATTACTAAAATGG
TCATTACGTAAATGGTCTTAAA
Found at i:3520248 original size:57 final size:58
Alignment explanation
Indices: 3520156--3520294 Score: 253
Period size: 57 Copynumber: 2.4 Consensus size: 58
3520146 AAAACATGGC
3520156 AAATTACTAAAATGACCCTAAAATGAATGAAAGTACTTAATAACTCTTAAATCAAAAA
1 AAATTACTAAAATGACCCTAAAATGAATGAAAGTACTTAATAACTCTTAAATCAAAAA
*
3520214 AAATTACTAAAATG-CCCTAAAATGAATGAAAGTACTTAATAACTCTTAAATCAAGAA
1 AAATTACTAAAATGACCCTAAAATGAATGAAAGTACTTAATAACTCTTAAATCAAAAA
*
3520271 AAATTACTGAAATGACCCTAAAAT
1 AAATTACTAAAATGACCCTAAAAT
3520295 CCATGAAATT
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
57 55 0.71
58 23 0.29
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (58 bp):
AAATTACTAAAATGACCCTAAAATGAATGAAAGTACTTAATAACTCTTAAATCAAAAA
Found at i:3520263 original size:29 final size:29
Alignment explanation
Indices: 3520174--3520263 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 29
3520164 AAAATGACCC
3520174 TAAAATGAATGAAAGTACTTAATAACTCT
1 TAAAATGAATGAAAGTACTTAATAACTCT
* ** * *
3520203 T-AAATCAAAAAAAATTAC-TAA-AA-TGCCC
1 TAAAAT-GAATGAAAGTACTTAATAACT--CT
3520231 TAAAATGAATGAAAGTACTTAATAACTCT
1 TAAAATGAATGAAAGTACTTAATAACTCT
3520260 TAAA
1 TAAA
3520264 TCAAGAAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 14
0.65 0.15 0.21
Matches are distributed among these distances:
26 1 0.02
27 2 0.05
28 17 0.39
29 21 0.48
30 2 0.05
31 1 0.02
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (29 bp):
TAAAATGAATGAAAGTACTTAATAACTCT
Found at i:3520264 original size:28 final size:28
Alignment explanation
Indices: 3520176--3520264 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 28
3520166 AATGACCCTA
3520176 AAATGAATGAAAGTACTTAATAACTCTT
1 AAATGAATGAAAGTACTTAATAACTCTT
* ** * * *
3520204 AAATCAAAAAAAATTAC-TAA-AATGCCCTA
1 AAAT-GAATGAAAGTACTTAATAA--CTCTT
3520233 AAATGAATGAAAGTACTTAATAACTCTT
1 AAATGAATGAAAGTACTTAATAACTCTT
3520261 AAAT
1 AAAT
3520265 CAAGAAAAAT
Statistics
Matches: 44, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
27 2 0.05
28 22 0.50
29 18 0.41
30 2 0.05
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (28 bp):
AAATGAATGAAAGTACTTAATAACTCTT
Found at i:3520278 original size:29 final size:29
Alignment explanation
Indices: 3520189--3520278 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 29
3520179 TGAATGAAAG
*
3520189 TACTTAATAACTCTTAAATCAAAAAAAAT
1 TACTTAATAACTCTTAAATCAAGAAAAAT
* * * *
3520218 TAC-TAA-AATGCCCTAAAATGAATG--AAAG
1 TACTTAATAA--CTCTTAAATCAA-GAAAAAT
3520246 TACTTAATAACTCTTAAATCAAGAAAAAT
1 TACTTAATAACTCTTAAATCAAGAAAAAT
3520275 TACT
1 TACT
3520279 GAAATGACCC
Statistics
Matches: 45, Mismatches: 9, Indels: 14
0.66 0.13 0.21
Matches are distributed among these distances:
27 3 0.07
28 18 0.40
29 22 0.49
30 2 0.04
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (29 bp):
TACTTAATAACTCTTAAATCAAGAAAAAT
Found at i:3520320 original size:115 final size:116
Alignment explanation
Indices: 3520156--3520427 Score: 281
Period size: 115 Copynumber: 2.4 Consensus size: 116
3520146 AAAACATGGC
* * * * ** *
3520156 AAATTACTAAAATGACCCTAAAATGAATGAAAGTAC-TTAATAACTCTTAAATCAAAAAAAATTA
1 AAATTACTAAAATGACCCTAAAATGCATGAAATTGCATAAATGGCTCTTAAAACAAAAAAAATTA
3520220 CTAAAATG-CCCTAAAATGAATGAAAGT-AC-TTAATAACTCT-TAAATCAAGAA
66 CTAAAATGACCC-AAAATGAATGAAA-TCACATT-ATAACT-TATAAATCAAGAA
* * ****
3520271 AAATTACTGAAATGACCCTAAAATCCATGAAATTGCATAAATGGC-CTTAAAACATGTCAAATTA
1 AAATTACTAAAATGACCCTAAAATGCATGAAATTGCATAAATGGCTCTTAAAACAAAAAAAATTA
** * * *
3520335 CTAAAATGATGCAAAATGCATGAAATCACATTATAACTTATAAATCATGGA
66 CTAAAATGACCCAAAATGAATGAAATCACATTATAACTTATAAATCAAGAA
*
3520386 AAATTACTAAAATGA-CCT-AAATGCATGAAATTGTATAAATGG
1 AAATTACTAAAATGACCCTAAAATGCATGAAATTGCATAAATGG
3520428 TAGCATGGCA
Statistics
Matches: 131, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
113 22 0.17
114 5 0.04
115 96 0.73
116 8 0.06
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.27
Consensus pattern (116 bp):
AAATTACTAAAATGACCCTAAAATGCATGAAATTGCATAAATGGCTCTTAAAACAAAAAAAATTA
CTAAAATGACCCAAAATGAATGAAATCACATTATAACTTATAAATCAAGAA
Found at i:3520585 original size:58 final size:57
Alignment explanation
Indices: 3520484--3520642 Score: 128
Period size: 58 Copynumber: 2.8 Consensus size: 57
3520474 TAATAACCTT
* * * * *
3520484 TAAATCTTGAAAAATGAC-TAAAGTGCT-ATTAAAATGTACGAAATGACA-AAAAAGTTTA
1 TAAATCATAAAAAATGACTTAAA-TG-TAATT-AAATGCATGAAATGACATAAAAA-TCTA
* * * * * * *
3520542 TAGATCATAGAAAATGACTTCAATGT-ATCTAAAATGCGTGAAATGGCATAATAATCTC
1 TAAATCATAAAAAATGACTTAAATGTAAT-T-AAATGCATGAAATGACATAAAAATCTA
3520600 TAAATCATAAAAAATGACTTAAATGTAATTAAATGCATGAAAT
1 TAAATCATAAAAAATGACTTAAATGTAATTAAATGCATGAAAT
3520643 AATCTAGTAA
Statistics
Matches: 81, Mismatches: 16, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
57 15 0.19
58 57 0.70
59 9 0.11
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (57 bp):
TAAATCATAAAAAATGACTTAAATGTAATTAAATGCATGAAATGACATAAAAATCTA
Found at i:3522697 original size:35 final size:34
Alignment explanation
Indices: 3522658--3522761 Score: 163
Period size: 34 Copynumber: 3.0 Consensus size: 34
3522648 AGACCATGAA
* **
3522658 ATATTTTCCTAGATTTCTTTAGTCTTGTTTCTTTT
1 ATATTTTCCTAGATTTCTTTAGTATT-TTTCCCTT
3522693 ATATTTTCCTAGATTTCTTTAGTATTTTTCCCTT
1 ATATTTTCCTAGATTTCTTTAGTATTTTTCCCTT
*
3522727 ATACTTTCCTAGATTTCTTTAGTATTTTTCCCTT
1 ATATTTTCCTAGATTTCTTTAGTATTTTTCCCTT
3522761 A
1 A
3522762 AAAGGCATCG
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
34 40 0.62
35 25 0.38
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.59
Consensus pattern (34 bp):
ATATTTTCCTAGATTTCTTTAGTATTTTTCCCTT
Found at i:3525657 original size:27 final size:27
Alignment explanation
Indices: 3525618--3525669 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
3525608 CAAATTTTGA
*
3525618 AGAAAAGCGGGGTTCGAGTATCCCTTC
1 AGAAAAGCAGGGTTCGAGTATCCCTTC
* *
3525645 AGAAGAGCAGGGTTGGAGTATCCCT
1 AGAAAAGCAGGGTTCGAGTATCCCT
3525670 GATAATCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (27 bp):
AGAAAAGCAGGGTTCGAGTATCCCTTC
Found at i:3527218 original size:13 final size:13
Alignment explanation
Indices: 3527200--3527225 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3527190 CAATTTTTTG
3527200 TGTATCGATACAT
1 TGTATCGATACAT
3527213 TGTATCGATACAT
1 TGTATCGATACAT
3527226 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3529601 original size:21 final size:21
Alignment explanation
Indices: 3529577--3529623 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
3529567 TTTAATGCTG
3529577 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
3529597 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
3529618 ATTTTG
1 ATTTTG
3529624 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:3529762 original size:13 final size:13
Alignment explanation
Indices: 3529744--3529782 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3529734 ATAATCACCC
*
3529744 TGTATCGATACAG
1 TGTATCGATACAA
3529757 TGTATCGATACAA
1 TGTATCGATACAA
3529770 TGTATCGATACAA
1 TGTATCGATACAA
3529783 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3529793 original size:20 final size:20
Alignment explanation
Indices: 3529768--3529846 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
3529758 GTATCGATAC
3529768 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
3529788 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
3529813 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
3529833 CATGTATCGATACA
1 AATGTATCGATACA
3529847 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:3531881 original size:15 final size:15
Alignment explanation
Indices: 3531861--3531891 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3531851 ATTTCGTTTG
*
3531861 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3531876 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3531891 G
1 G
3531892 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3533714 original size:21 final size:21
Alignment explanation
Indices: 3533685--3533729 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
3533675 AAGTTTTCAT
*
3533685 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3533705 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3533727 TTT
1 TTT
3533730 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3535939 original size:13 final size:13
Alignment explanation
Indices: 3535921--3535946 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3535911 CAATTTTTTG
3535921 TGTATCGATACAT
1 TGTATCGATACAT
3535934 TGTATCGATACAT
1 TGTATCGATACAT
3535947 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3538286 original size:13 final size:13
Alignment explanation
Indices: 3538268--3538293 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3538258 CAATTTTTTG
3538268 TGTATCGATACAT
1 TGTATCGATACAT
3538281 TGTATCGATACAT
1 TGTATCGATACAT
3538294 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3540669 original size:21 final size:21
Alignment explanation
Indices: 3540645--3540691 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
3540635 TTTAATGCTG
3540645 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
3540665 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
3540686 ATTTTG
1 ATTTTG
3540692 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:3540830 original size:13 final size:13
Alignment explanation
Indices: 3540812--3540850 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3540802 ATAATCACCC
*
3540812 TGTATCGATACAG
1 TGTATCGATACAA
3540825 TGTATCGATACAA
1 TGTATCGATACAA
3540838 TGTATCGATACAA
1 TGTATCGATACAA
3540851 GGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3542948 original size:15 final size:15
Alignment explanation
Indices: 3542928--3542958 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3542918 ATTTCGTTTG
*
3542928 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3542943 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3542958 G
1 G
3542959 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3544781 original size:21 final size:21
Alignment explanation
Indices: 3544752--3544796 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3544742 AAGTTTTCAT
*
3544752 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3544772 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3544794 TTT
1 TTT
3544797 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3547033 original size:13 final size:13
Alignment explanation
Indices: 3547015--3547040 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3547005 CAATTTTTTG
3547015 TGTATCGATACAT
1 TGTATCGATACAT
3547028 TGTATCGATACAT
1 TGTATCGATACAT
3547041 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3547873 original size:61 final size:61
Alignment explanation
Indices: 3547796--3547930 Score: 200
Period size: 61 Copynumber: 2.2 Consensus size: 61
3547786 TACGTTGGAA
* *
3547796 ATGTATCGATACAATTTTTCAACCGA-AATGTGACATGGTCATGTATTGATGCATCTGAGAC
1 ATGTATCGATACAATTTTTCAA-CGAGAATGTGACATGGTCATGTATTAATACATCTGAGAC
* * *
3547857 ATGTATCGATATAATTTTTCGACTAGAATGTGACATGGTCATGTATTAATACATCTGAGAC
1 ATGTATCGATACAATTTTTCAACGAGAATGTGACATGGTCATGTATTAATACATCTGAGAC
*
3547918 ATGTATTGATACA
1 ATGTATCGATACA
3547931 TTCACTAATT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 2 0.03
61 64 0.97
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (61 bp):
ATGTATCGATACAATTTTTCAACGAGAATGTGACATGGTCATGTATTAATACATCTGAGAC
Found at i:3548527 original size:31 final size:31
Alignment explanation
Indices: 3548489--3548553 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
3548479 CTTGACTTGA
* *
3548489 ACTTAGGTGCCACTAGCTTGTGTGGGCTTTG
1 ACTTAGGTGCCACCAGCTTGTGCGGGCTTTG
*
3548520 ACTTAGGTGCCACCAGTTTGTGCGGGCTTTG
1 ACTTAGGTGCCACCAGCTTGTGCGGGCTTTG
3548551 ACT
1 ACT
3548554 CAAACTTAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.14, C:0.22, G:0.31, T:0.34
Consensus pattern (31 bp):
ACTTAGGTGCCACCAGCTTGTGCGGGCTTTG
Found at i:3549701 original size:105 final size:103
Alignment explanation
Indices: 3549582--3549926 Score: 270
Period size: 105 Copynumber: 3.3 Consensus size: 103
3549572 CCGATGAAAT
* *
3549582 AACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTGGGAAATAAAATCGGAATTGGAG
1 AACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTT-GGAAATAAAATCGGAGTTGGAG
*
3549647 TATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAA
65 TATCCCCGATTAAAGGAGAAATTGGTGTTCTGAAAATAA
* * * * * * *
3549686 AACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGGGGTTGGAG
1 AA-CGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTGGAAATAAAATCGGAGTTGGAG
* * * * * ** *
3549751 TATCCCCTCAGAAATAACGG-G--GTTGGAGTATCCCCGATGAT-T
65 TAT-CCC-C-G-ATTAAAGGAGAAATTGGTGT-T--CTGAAAATAA
* *
3549793 AACGGGGTTGGAGTGTCCTCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGAGTT
1 AACGGGGTTGGAGTATCCTCGATTGTGAA-AAATT-G-G--TATTTTGGAAATAAAATCGGAGTT
* ** * *
3549858 GGAGTATCCCCGATTATA-GA-AAATTAATGTTTTGAAAGTAA
61 GGAGTATCCCCGATTAAAGGAGAAATTGGTGTTCTGAAAATAA
* *
3549899 AATCGGAGTTGGAATATCCTCGATTGTG
1 AA-CGGGGTTGGAGTATCCTCGATTGTG
3549927 GAGAATTGAG
Statistics
Matches: 180, Mismatches: 43, Indels: 33
0.70 0.17 0.13
Matches are distributed among these distances:
104 23 0.13
105 47 0.26
106 29 0.16
107 34 0.19
108 16 0.09
109 1 0.01
110 3 0.02
111 27 0.15
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (103 bp):
AACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTGGAAATAAAATCGGAGTTGGAGT
ATCCCCGATTAAAGGAGAAATTGGTGTTCTGAAAATAA
Found at i:3549747 original size:51 final size:51
Alignment explanation
Indices: 3549587--3549757 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
3549577 GAAATAACGA
* * *
3549587 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTGGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTT-GAAAATAAAATCGG
** * * * * *
3549639 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
3549692 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
3549743 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3549758 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 29 0.30
54 13 0.13
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:3549774 original size:28 final size:27
Alignment explanation
Indices: 3549740--3549806 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 27
3549730 AAAATAAAGT
3549740 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-CATG-AATAA
* *
3549768 CGGGGTTGGAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCCATGAATAA
3549795 CGGGGTTGGAGT
1 CGGGGTTGGAGT
3549807 GTCCTCGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 17 0.47
28 19 0.53
ACGTcount: A:0.22, C:0.18, G:0.36, T:0.24
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCCATGAATAA
Found at i:3549803 original size:27 final size:28
Alignment explanation
Indices: 3549740--3549815 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 28
3549730 AAAATAAAGT
*
3549740 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
3549768 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
3549795 CGGGGTTGGAGTGTCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
3549816 TGTGAAGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:3552301 original size:13 final size:13
Alignment explanation
Indices: 3552283--3552308 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3552273 ACAAAGATCC
3552283 ATGTATCGATACA
1 ATGTATCGATACA
3552296 ATGTATCGATACA
1 ATGTATCGATACA
3552309 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3552304 original size:33 final size:33
Alignment explanation
Indices: 3552262--3552328 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3552252 AAAATTTCCA
***
3552262 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3552295 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3552328 A
1 A
3552329 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3552372 original size:19 final size:18
Alignment explanation
Indices: 3552348--3552415 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3552338 CAGTAGCTAA
3552348 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3552367 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3552382 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3552399 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3552416 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3552388 original size:13 final size:13
Alignment explanation
Indices: 3552370--3552394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3552360 ACAATACTTA
3552370 TGTATCGATACAT
1 TGTATCGATACAT
3552383 TGTATCGATACA
1 TGTATCGATACA
3552395 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3552392 original size:32 final size:32
Alignment explanation
Indices: 3552351--3552413 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3552341 TAGCTAATTA
*
3552351 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3552383 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3552414 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3552495 original size:21 final size:21
Alignment explanation
Indices: 3552471--3552527 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
3552461 CATTTGTAGG
3552471 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
3552492 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
3552513 ATGTATCGATACATT
1 ATGTATCGATACATT
3552528 TAATTTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:3552537 original size:1 final size:1
Alignment explanation
Indices: 3552531--3552562 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
3552521 ATACATTTAA
*
3552531 TTTTTTTTTTTTTTTATTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3552563 CAAACACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:3552562 original size:17 final size:17
Alignment explanation
Indices: 3552526--3552561 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
3552516 TATCGATACA
3552526 TTTAATTTTTTTTTTTT
1 TTTAATTTTTTTTTTTT
3552543 TTT-ATTTTTTTTTTTT
1 TTTAATTTTTTTTTTTT
3552559 TTT
1 TTT
3552562 TCAAACACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (17 bp):
TTTAATTTTTTTTTTTT
Found at i:3553242 original size:55 final size:55
Alignment explanation
Indices: 3553158--3554055 Score: 1381
Period size: 55 Copynumber: 16.3 Consensus size: 55
3553148 ATAAATTGTA
* * * * * *
3553158 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3553213 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3553268 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3553323 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3553378 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
3553433 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3553488 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
3553543 TCCTGCTCTTTGAGGACTGGACAA--TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3553598 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
3553653 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
3553708 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3553763 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3553818 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3553873 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3553928 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
3553983 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
3554038 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
3554056 AAAAAGCGGA
Statistics
Matches: 792, Mismatches: 34, Indels: 34
0.92 0.04 0.04
Matches are distributed among these distances:
53 2 0.00
54 22 0.03
55 746 0.94
56 20 0.03
57 2 0.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:3555043 original size:1 final size:1
Alignment explanation
Indices: 3555039--3555086 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
3555029 CTTTTCTCTC
* * * * *
3555039 TTTTTCTTTGTTTTGTTTTTTTTTGTTTTTTTTTTCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3555087 GAAGAGAAGG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:3555057 original size:15 final size:14
Alignment explanation
Indices: 3555039--3555086 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 14
3555029 CTTTTCTCTC
3555039 TTTTTCTTTGTTTT
1 TTTTTCTTTGTTTT
*
3555053 GTTTTTTTTTGTTTTT
1 -TTTTTCTTTG-TTTT
3555069 TTTTTCTTT-TTTT
1 TTTTTCTTTGTTTT
3555082 TTTTT
1 TTTTT
3555087 GAAGAGAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 9 0.30
15 17 0.57
16 4 0.13
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (14 bp):
TTTTTCTTTGTTTT
Found at i:3567701 original size:51 final size:51
Alignment explanation
Indices: 3567541--3567711 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
3567531 GAAATAACGA
* * *
3567541 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
3567593 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
3567646 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
3567697 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3567712 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 32 0.33
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:3567757 original size:27 final size:28
Alignment explanation
Indices: 3567694--3567769 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
3567684 AAAATAAAGT
*
3567694 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
3567722 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
3567749 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
3567770 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:3570254 original size:13 final size:13
Alignment explanation
Indices: 3570236--3570261 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3570226 ACAAAGATCC
3570236 ATGTATCGATACA
1 ATGTATCGATACA
3570249 ATGTATCGATACA
1 ATGTATCGATACA
3570262 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3570257 original size:33 final size:33
Alignment explanation
Indices: 3570215--3570281 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3570205 AAAATTTCCA
***
3570215 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3570248 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3570281 A
1 A
3570282 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3570325 original size:19 final size:18
Alignment explanation
Indices: 3570301--3570368 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3570291 CAGTAGCTAA
3570301 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3570320 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3570335 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3570352 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3570369 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3570341 original size:13 final size:13
Alignment explanation
Indices: 3570323--3570347 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3570313 ACAATACTTA
3570323 TGTATCGATACAT
1 TGTATCGATACAT
3570336 TGTATCGATACA
1 TGTATCGATACA
3570348 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3570345 original size:32 final size:32
Alignment explanation
Indices: 3570304--3570366 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3570294 TAGCTAATTA
*
3570304 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3570336 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3570367 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3570448 original size:21 final size:21
Alignment explanation
Indices: 3570424--3570480 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
3570414 CATTTGTAGG
3570424 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
3570445 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
3570466 ATGTATCGATACATT
1 ATGTATCGATACATT
3570481 TAATTTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:3570490 original size:1 final size:1
Alignment explanation
Indices: 3570484--3570529 Score: 65
Period size: 1 Copynumber: 46.0 Consensus size: 1
3570474 ATACATTTAA
***
3570484 TTTTTTTTTTTTTTTTTTTTTTCAATTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3570530 CAAACACTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.04, C:0.02, G:0.00, T:0.93
Consensus pattern (1 bp):
T
Found at i:3570516 original size:25 final size:25
Alignment explanation
Indices: 3570482--3570529 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
3570472 CGATACATTT
3570482 AATTTTTTTTTTTTTTTTTTTTTTC
1 AATTTTTTTTTTTTTTTTTTTTTTC
3570507 AATTTTTTTTTTTTTTTTTTTTT
1 AATTTTTTTTTTTTTTTTTTTTT
3570530 CAAACACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.08, C:0.02, G:0.00, T:0.90
Consensus pattern (25 bp):
AATTTTTTTTTTTTTTTTTTTTTTC
Found at i:3570517 original size:24 final size:24
Alignment explanation
Indices: 3570485--3570532 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
3570475 TACATTTAAT
3570485 TTTTTTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTTTTTTCAA
3570509 TTTTTTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTTTTTTCAA
3570533 ACACTTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.04, G:0.00, T:0.88
Consensus pattern (24 bp):
TTTTTTTTTTTTTTTTTTTTTCAA
Found at i:3571196 original size:13 final size:13
Alignment explanation
Indices: 3571178--3571203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3571168 ACATAAGTTT
3571178 TGTATCGATACAA
1 TGTATCGATACAA
3571191 TGTATCGATACAA
1 TGTATCGATACAA
3571204 AACTACCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3574856 original size:52 final size:52
Alignment explanation
Indices: 3574771--3574895 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
3574761 ATATGAAAAG
* *
3574771 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
* *
3574823 TTGCCTGCATGTATCGATACATTTTATAATGTATTGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
3574875 TTGCCTGCATGTATTGATACA
1 TTGCCTGCATGTATCGATACA
3574896 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:3574908 original size:52 final size:52
Alignment explanation
Indices: 3574771--3574915 Score: 186
Period size: 52 Copynumber: 2.8 Consensus size: 52
3574761 ATATGAAAAG
* *
3574771 TTGCTTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAAT
*** * *
3574823 TTGCCTGCATGTATCGATACATTTTATAATGTATTGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAAT
*
3574875 TTGCCTGCATGTATTGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
3574916 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 4 0.05
52 77 0.95
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAAT
Found at i:3574922 original size:13 final size:13
Alignment explanation
Indices: 3574904--3574928 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3574894 CAAAGATCAG
3574904 TGTATCGATACAA
1 TGTATCGATACAA
3574917 TGTATCGATACA
1 TGTATCGATACA
3574929 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3575011 original size:13 final size:13
Alignment explanation
Indices: 3574993--3575017 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3574983 CAAAAAAATA
3574993 TGTATCGATACAT
1 TGTATCGATACAT
3575006 TGTATCGATACA
1 TGTATCGATACA
3575018 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3575028 original size:33 final size:33
Alignment explanation
Indices: 3574971--3575037 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3574961 AGTAGCTTAA
*
3574971 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCAATAC
* ***
3575004 ATTGTATCGATACAACATTTTATGTATCAATAC
1 ATTGTATCGATACAAAAAAATATGTATCAATAC
3575037 A
1 A
3575038 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCAATAC
Found at i:3578272 original size:13 final size:13
Alignment explanation
Indices: 3578254--3578278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3578244 TATGGCATAT
3578254 TGTATCGATACAA
1 TGTATCGATACAA
3578267 TGTATCGATACA
1 TGTATCGATACA
3578279 TGATAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3578289 original size:33 final size:33
Alignment explanation
Indices: 3578234--3578298 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
3578224 TACCACTGTT
* * * *
3578234 TGTATCGATATATGGCATATTGTATCGATACAA
1 TGTATCGATACATGACAAATTGTATCAATACAA
*
3578267 TGTATCGATACATGATAAATTGTATCAATACA
1 TGTATCGATACATGACAAATTGTATCAATACA
3578299 TTGCTTCAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCGATACATGACAAATTGTATCAATACAA
Found at i:3586201 original size:30 final size:30
Alignment explanation
Indices: 3586165--3586252 Score: 144
Period size: 30 Copynumber: 3.0 Consensus size: 30
3586155 AATATATTTT
3586165 TTATCAAGGGGGAGAAAATCTTTTAAACGA
1 TTATCAAGGGGGAGAAAATCTTTTAAACGA
* *
3586195 TTATCAAGGGAGAGAAAATCTTTTAAATGA
1 TTATCAAGGGGGAGAAAATCTTTTAAACGA
3586225 TTATCAAGGGGGAG-AAAT-TTTTAAACGA
1 TTATCAAGGGGGAGAAAATCTTTTAAACGA
3586253 GAGTCTTAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.17
29 4 0.07
30 41 0.76
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TTATCAAGGGGGAGAAAATCTTTTAAACGA
Found at i:3586666 original size:21 final size:21
Alignment explanation
Indices: 3586642--3586692 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
3586632 TATATCAATG
3586642 AATGTTTTAGAG-TTATAAACA
1 AATGTTTTAGAGCTTA-AAACA
* *
3586663 AATGTTTTTGAGCCTTAAATCA
1 AATGTTTTAGAG-CTTAAAACA
3586685 AATGTTTT
1 AATGTTTT
3586693 TAAGTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 11 0.42
22 12 0.46
23 3 0.12
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (21 bp):
AATGTTTTAGAGCTTAAAACA
Found at i:3586877 original size:20 final size:20
Alignment explanation
Indices: 3586831--3586887 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 20
3586821 TTGTGTCGAT
*
3586831 ACAA-TGTATCGATACATGT
1 ACAATTGTATCGATACATGG
*
3586850 TC-ATTGTATCGATACATGG
1 ACAATTGTATCGATACATGG
3586869 ACAATTGTATCGATACATG
1 ACAATTGTATCGATACATG
3586888 AAACTGGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.48
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (20 bp):
ACAATTGTATCGATACATGG
Found at i:3590583 original size:52 final size:52
Alignment explanation
Indices: 3590502--3590622 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
3590492 GAAAATTTAT
* *
3590502 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAACTTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
3590554 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
3590606 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
3590623 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:3590635 original size:52 final size:51
Alignment explanation
Indices: 3590502--3590642 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 51
3590492 GAAAATTTAT
*
3590502 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAACTTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
3590554 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
3590606 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
3590643 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:3590649 original size:13 final size:13
Alignment explanation
Indices: 3590631--3590655 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3590621 CAAAGATCAG
3590631 TGTATCGATACAA
1 TGTATCGATACAA
3590644 TGTATCGATACA
1 TGTATCGATACA
3590656 TTGTGAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3590738 original size:13 final size:13
Alignment explanation
Indices: 3590720--3590744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3590710 CAAAAAAATA
3590720 TGTATCGATACAT
1 TGTATCGATACAT
3590733 TGTATCGATACA
1 TGTATCGATACA
3590745 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3590740 original size:33 final size:33
Alignment explanation
Indices: 3590698--3590764 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3590688 AGTAGCTTAA
3590698 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
3590731 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
3590764 A
1 A
3590765 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:3595180 original size:33 final size:33
Alignment explanation
Indices: 3595143--3595209 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3595133 TTCAACGATT
3595143 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3595176 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3595209 T
1 T
3595210 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3595181 original size:13 final size:13
Alignment explanation
Indices: 3595163--3595187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3595153 CATAAAATGT
3595163 TGTATCGATACAA
1 TGTATCGATACAA
3595176 TGTATCGATACA
1 TGTATCGATACA
3595188 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3595270 original size:13 final size:13
Alignment explanation
Indices: 3595252--3595276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3595242 ATTACTCACA
3595252 TGTATCGATACAT
1 TGTATCGATACAT
3595265 TGTATCGATACA
1 TGTATCGATACA
3595277 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3595413 original size:52 final size:52
Alignment explanation
Indices: 3595285--3595405 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
3595275 CACTGATCTT
*
3595285 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
3595337 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3595389 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3595406 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3598555 original size:13 final size:13
Alignment explanation
Indices: 3598537--3598563 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3598527 ACATTATGCT
3598537 TTGTATCGATACA
1 TTGTATCGATACA
3598550 TTGTATCGATACA
1 TTGTATCGATACA
3598563 T
1 T
3598564 GTTCACTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3599714 original size:167 final size:165
Alignment explanation
Indices: 3599406--3599817 Score: 480
Period size: 167 Copynumber: 2.5 Consensus size: 165
3599396 TTCACCCCCC
* ** *
3599406 AAAAATTAAAAACCAAGAAACATCCT-CCTGAAAATATTACGGAGTAGAAAACTTCAT-TTTTT-
1 AAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAAT-TTACAGAGTAGAAAAC-TC-TGTTTTTG
*
3599468 AGAAACAAGGGAATTTTAAGAAAAAAATTCAAAAACTCATGAAAATGAATAAATTTCTAAAAACT
63 A-AAACAAGAGAATTTTAAGAAAAAAATTCAAAAACTCATGAAAATGAATAAATTTCTAAAAACT
* * *
3599533 GATTTAATATGAAATTAATAATAATATTTGATAAATTTAA
127 AATTTAATATGAAATAAATAATAATATTTAATAAATTT-A
* *
3599573 AAAAATTAAAAACTAAGTAAAATACC-CCCAAACAAATTTACAGAGTAGAAAACTCTGTTTTTCG
1 AAAAATTAAAAACCAAGAAAAAT-CCTCCCAAA-AAATTTACAGAGTAGAAAACTCTGTTTTT-G
* * * *
3599637 AAAACAAGAGAATTTTAAGAAACAAATTC-AAAACTCATGAAAAT-AATTGAATTTTTGAAAACT
63 AAAACAAGAGAATTTTAAGAAAAAAATTCAAAAACTCATGAAAATGAA-TAAATTTCTAAAAACT
* *
3599700 AATTTAATATGAAATAAATAATAATATTTAATGAATTTT
127 AATTTAATATGAAATAAATAATAATATTTAATAAATTTA
* * *
3599739 AAAAATTAAAAACCAAGAAAAATCCTCCCAAAAATTTTATGCAGA--AGAAAACTCCGTAATTTG
1 AAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAATTTA--CAGAGTAGAAAACTCTGT-TTTTG
3599802 AAAACAAGAGGAATTT
63 AAAACAAGA-GAATTT
3599818 CGAAAGAAAA
Statistics
Matches: 212, Mismatches: 21, Indels: 25
0.82 0.08 0.10
Matches are distributed among these distances:
165 29 0.14
166 39 0.18
167 93 0.44
168 46 0.22
169 5 0.02
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.28
Consensus pattern (165 bp):
AAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAATTTACAGAGTAGAAAACTCTGTTTTTGAAA
ACAAGAGAATTTTAAGAAAAAAATTCAAAAACTCATGAAAATGAATAAATTTCTAAAAACTAATT
TAATATGAAATAAATAATAATATTTAATAAATTTA
Found at i:3600972 original size:42 final size:43
Alignment explanation
Indices: 3600879--3600972 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 43
3600869 AGCAAAAGAG
* *
3600879 AAAGGAGTC-TCTCGAGTCTAAGCCGACGGGTAGACAAAGGAT
1 AAAGGAGTCTTCTCAAGTCAAAGCCGACGGGTAGACAAAGGAT
** * * *
3600921 AAAAAAGTCTTC-CAAGTCAAAGTCGATGGGTAGACAAAGGGT
1 AAAGGAGTCTTCTCAAGTCAAAGCCGACGGGTAGACAAAGGAT
*
3600963 GAAGGAGTCT
1 AAAGGAGTCT
3600973 CTTGGGTCAA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
42 39 0.95
43 2 0.05
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (43 bp):
AAAGGAGTCTTCTCAAGTCAAAGCCGACGGGTAGACAAAGGAT
Found at i:3601614 original size:265 final size:266
Alignment explanation
Indices: 3601112--3601671 Score: 716
Period size: 265 Copynumber: 2.1 Consensus size: 266
3601102 ATGCAAATCG
* * *
3601112 TTTGACAAGGGTGGTAACCATATGTCAAACAAGAAAGAGGCAAATTTGACCAGGATGGTAACCAA
1 TTTGACAAGGGTGGTAACCATACGTCAAACAAGAAAAAGGCAAATTTAACCAGGATGGTAACCAA
* * *
3601177 TACGTCAAATCAGATTGAAAAGAATCTAACCAGGGTGGTAACCATATGTTAGATAGAAAAGAGAC
66 TACGTCAAATCAGAATGAAAAGAATCTAACCAGGGTGGTAACCATACGTTAGAAAGAAAAGAGAC
* * *
3601242 AGATTTGACCATAATGGTAACCATACGTCAAATCGGAATGAAAATAATCTGACTAGGGTGGTAAC
131 AGATTTGACCAGAATGGTAACCATACGTCAAATCGAAATGAAAAGAATCTGACTAGGGTGGTAAC
* * * *
3601307 CATACGTCAGATAAGAAGGATGTAGACTTGACCTGAGTGGTAACCATACATTAAATCAGAATAAA
196 CATACGTCAGATAAGAAGGAGGCAGACTTGACCAGAGTGGTAACCATACATCAAATCAGAATAAA
3601372 AAG-AA
261 AAGAAA
* * * *
3601377 TTTGACCAGGGTGGTAACCATACGTCACACAAGAAAAAGGTAGATTTAACCAAGG-TGGTAACC-
1 TTTGACAAGGGTGGTAACCATACGTCAAACAAGAAAAAGGCAAATTTAACC-AGGATGGTAACCA
* * * *
3601440 ATATGTCAAATCTGAATGAAAAGAAATCTGACCAGGGTGGTAACCATACGTTAGACAAG-AAGGA
65 ATACGTCAAATCAGAATGAAAAG-AATCTAACCAGGGTGGTAACCATACGTTAGA-AAGAAAAGA
* * ** * *
3601504 GGCGGATTTGACCAGCGTGTTAACCATACGTCAAATCGAAATGAAAAGAATCTGATTAGGGTGGT
128 GACAGATTTGACCAGAATGGTAACCATACGTCAAATCGAAATGAAAAGAATCTGACTAGGGTGGT
* * * * * *
3601569 AACCATACGTTAGATAGGAAGGAGGCAGATTTGACCAGGGTGGTAACCATACGTCAAATCGGAAT
193 AACCATACGTCAGATAAGAAGGAGGCAGACTTGACCAGAGTGGTAACCATACATCAAATCAGAAT
*
3601634 GAAAAGAAA
258 AAAAAGAAA
* * *
3601643 TTTAATTAA-AGTGGTAACCATACGTCAAA
1 TTTGA-CAAGGGTGGTAACCATACGTCAAA
3601672 TTAGAATGAA
Statistics
Matches: 251, Mismatches: 39, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
264 20 0.08
265 201 0.80
266 29 0.12
267 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (266 bp):
TTTGACAAGGGTGGTAACCATACGTCAAACAAGAAAAAGGCAAATTTAACCAGGATGGTAACCAA
TACGTCAAATCAGAATGAAAAGAATCTAACCAGGGTGGTAACCATACGTTAGAAAGAAAAGAGAC
AGATTTGACCAGAATGGTAACCATACGTCAAATCGAAATGAAAAGAATCTGACTAGGGTGGTAAC
CATACGTCAGATAAGAAGGAGGCAGACTTGACCAGAGTGGTAACCATACATCAAATCAGAATAAA
AAGAAA
Found at i:3601659 original size:177 final size:176
Alignment explanation
Indices: 3601114--3601959 Score: 692
Period size: 177 Copynumber: 4.8 Consensus size: 176
3601104 GCAAATCGTT
* * * * *
3601114 TGACAAGGGTGGTAACCATATGTCAAACAAGAAAGAGGCAAATTTGACCAGGATGGTAACCAATA
1 TGACTAGGGTGGTAACCATACGTCAGACAAGAAGGAGGCAGATTTGACCAGG-TGGTAACC-ATA
* * * * *
3601179 CGTCAAATCAGATTGAAAAGAATCTAACCAGGGTGGTAACCATATGTTAGATAGAAAAGAGACAG
64 CGTCAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCATACGTTAGATAGGAAAGAGGCAG
* *
3601244 ATTTGACCATA-ATGGTAACCATACGTCAAATCGGAATGAAAA-TAATC
129 ATTTGACCA-AGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAATC
* * * * *
3601291 TGACTAGGGTGGTAACCATACGTCAGATAAGAAGGATGTAGACTTGACCTGAGTGGTAACCATAC
1 TGACTAGGGTGGTAACCATACGTCAGACAAGAAGGAGGCAGATTTGACCAG-GTGGTAACCATAC
* * * * * * * * * *
3601356 ATTAAATCAGAATAAAAAGAATTTGACCAGGGTGGTAACCATACGTCACACAAGAAAAAGGTAGA
65 GTCAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCATACGTTAGATAGGAAAGAGGCAGA
* * *
3601421 TTTAACCAAGGTGGTAACCATATGTCAAATCTGAATGAAAAGAAATC
130 TTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAATC
* * * *
3601468 TGACCAGGGTGGTAACCATACGTTAGACAAGAAGGAGGCGGATTTGACCAGCGTGTTAACCATAC
1 TGACTAGGGTGGTAACCATACGTCAGACAAGAAGGAGGCAGATTTGACCAG-GTGGTAACCATAC
** *
3601533 GTCAAATC-GAAATGAAAAGAATCTGATTAGGGTGGTAACCATACGTTAGATAGGAAGGAGGCAG
65 GTCAAATCAG-AATGAAAAGAATCTGACCAGGGTGGTAACCATACGTTAGATAGGAAAGAGGCAG
* *
3601597 ATTTGACCAGGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAATT
129 ATTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAATC
* * ** * ** * * * * *
3601645 TAATTAAAGTGGTAACCATACGTCAAATTAGAATGAAAAG-AAATCTGACCAGGGTGCTAACCAT
1 TGACTAGGGTGGTAACCATACGTCAGACAAGAA-G-GAGGCAGATTTGACCA-GGTGGTAACCAT
* * * * *** ** * * * * * * **
3601709 ACATTAGA-CAAGAAAGAGCTGGGTTTGACCAGGGTGGTAACCATACATCAAATCGGAATGA-AA
63 ACGTCAAATC-AGAATGAAAAGAATCTGACCAGGGTGGTAACCATACGTTAGATAGGAAAGAGGC
* * * * * *
3601772 AGAATCTGACTAGGGTGGTAACCATACGTCAGA-C--AA-GAAAGAGGCAGATT
127 AG-ATTTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAA-A-G-AAATC
* * * * * *
3601822 TGACCAAGGTGGTAACCATACATCAGACAAGAAAGAGACAGATTTAACCAGGGTGGTAACCATAC
1 TGACTAGGGTGGTAACCATACGTCAGACAAGAAGGAGGCAGATTTGACCA-GGTGGTAACCATAC
* * *
3601887 GTCAAAT-AGAAATGAAAAGAATCTAACC-GAGGTGGTAACCATACATCAGATAGGAAAGAGG-A
65 GTCAAATCAG-AATGAAAAGAATCTGACCAG-GGTGGTAACCATACGTTAGATAGGAAAGAGGCA
3601949 GAGTTTGACCA
128 GA-TTTGACCA
3601960 GGCCCTAACA
Statistics
Matches: 521, Mismatches: 129, Indels: 39
0.76 0.19 0.06
Matches are distributed among these distances:
174 4 0.01
175 9 0.02
176 160 0.31
177 257 0.49
178 87 0.17
179 4 0.01
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (176 bp):
TGACTAGGGTGGTAACCATACGTCAGACAAGAAGGAGGCAGATTTGACCAGGTGGTAACCATACG
TCAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCATACGTTAGATAGGAAAGAGGCAGAT
TTGACCAAGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAATC
Found at i:3601718 original size:222 final size:218
Alignment explanation
Indices: 3601376--3601946 Score: 738
Period size: 222 Copynumber: 2.6 Consensus size: 218
3601366 AATAAAAAGA
* *
3601376 ATTTGACCAGGGTGGTAACCATACGTCACACAAGAAAAAGGTAGATTTAACCAAGGTGGTAACCA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAG-AAAA-G-AAATTTAACCAAGGTGGTAACCA
* * *
3601441 TATGTCAAATCT-GAATGAAAAGAAATCTGACCAGGGTGGTAACCATACGTTAGACAAGAAGGAG
63 TACGTCAAAT-TAGAATGAAAAGAAATCTGACCAGGGTGGTAACCATACATTAGACAAGAAAGA-
* * *
3601505 GC-GGATTTGACCAGCGTGTTAACCATACGTCAAATCGAAATGAAAAGAATCTGATTAGGGTGGT
126 GCTGGATTTGACCAGCGTGGTAACCATACATCAAATCGAAATGAAAAGAATCTGACTAGGGTGGT
* * * *
3601569 AACCATACGTTAGATAGGAAGGAGGCAG
191 AACCATACGTCAGACAAGAAAGAGGCAG
** *
3601597 ATTTGACCAGGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAATTTAATTAAAGTGGTAACC
1 ATTTGACCAGGGTGGTAACCATACGTCAAA-C--AA-GAAAAGAAATTTAACCAAGGTGGTAACC
*
3601662 ATACGTCAAATTAGAATGAAAAGAAATCTGACCAGGGTGCTAACCATACATTAGACAAGAAAGAG
62 ATACGTCAAATTAGAATGAAAAGAAATCTGACCAGGGTGGTAACCATACATTAGACAAGAAAGAG
* * *
3601727 CTGGGTTTGACCAGGGTGGTAACCATACATCAAATCGGAATGAAAAGAATCTGACTAGGGTGGTA
127 CTGGATTTGACCAGCGTGGTAACCATACATCAAATCGAAATGAAAAGAATCTGACTAGGGTGGTA
3601792 ACCATACGTCAGACAAGAAAGAGGCAG
192 ACCATACGTCAGACAAGAAAGAGGCAG
* * * *
3601819 ATTTGACCAAGGTGGTAACCATACATCAGACAAGAAAGAGACAGATTTAACCAGGGTGGTAACCA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAAA-AGA-A-ATTTAACCAAGGTGGTAACCA
* * * *
3601884 TACGTCAAA-TAGAAATGAAAAG-AATCTAACC-GAGGTGGTAACCATACATCAGATAGGAAAGA
63 TACGTCAAATTAG-AATGAAAAGAAATCTGACCAG-GGTGGTAACCATACATTAGACAAGAAAGA
3601946 G
126 G
3601947 GAGAGTTTGA
Statistics
Matches: 308, Mismatches: 31, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
218 4 0.01
219 6 0.02
220 38 0.12
221 68 0.22
222 184 0.60
223 1 0.00
224 6 0.02
225 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (218 bp):
ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAAAAGAAATTTAACCAAGGTGGTAACCATAC
GTCAAATTAGAATGAAAAGAAATCTGACCAGGGTGGTAACCATACATTAGACAAGAAAGAGCTGG
ATTTGACCAGCGTGGTAACCATACATCAAATCGAAATGAAAAGAATCTGACTAGGGTGGTAACCA
TACGTCAGACAAGAAAGAGGCAG
Found at i:3601914 original size:44 final size:44
Alignment explanation
Indices: 3601112--3601961 Score: 440
Period size: 44 Copynumber: 19.2 Consensus size: 44
3601102 ATGCAAATCG
* * * **
3601112 TTTGACAAGGGTGGTAACCATATGTCAAACAAGAAA-GAGGCA-AA
1 TTTGACCAGGGTGGTAACCATACGTCAAA-TAGAAATGA-AAAGAA
* *
3601156 TTTGACCAGGATGGTAACCAATACGTCAAATCAG-ATTGAAAAGAA
1 TTTGACCAGGGTGGTAACC-ATACGTCAAAT-AGAAATGAAAAGAA
* * * * * * *
3601201 TCTAACCAGGGTGGTAACCATATGTTAGATAGAAAAGAGACAG-A
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGA-AAAGAA
*** * * *
3601245 TTTGACCATAATGGTAACCATACGTCAAATCGGAATGAAAATAA
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAGAA
* * * *
3601289 TCTGACTAGGGTGGTAACCATACGTCAGATAAGAAGGATG--TAG-A
1 TTTGACCAGGGTGGTAACCATACGTCAAAT-AGAA--ATGAAAAGAA
* * * * * *
3601333 CTTGACCTGAGTGGTAACCATACATTAAATCAG-AATAAAAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAAT-AGAAATGAAAAGAA
*
3601377 TTTGACCAGGGTGGTAACCATACGTCACACA-AG-AA--AAAGGTAGA
1 TTTGACCAGGGTGGTAACCATACGTCA-A-ATAGAAATGAAAAG-A-A
* * * *
3601421 TTTAACCAAGGTGGTAACCATATGTCAAATCTG-AATGAAAAGAAA
1 TTTGACCAGGGTGGTAACCATACGTCAAAT-AGAAATGAAAAG-AA
* * * *** *
3601466 TCTGACCAGGGTGGTAACCATACGTTAGACA-AG-AAGGAGGCGGA
1 TTTGACCAGGGTGGTAACCATACGTCA-A-ATAGAAATGAAAAGAA
* * *
3601510 TTTGACCAGCGTGTTAACCATACGTCAAATCGAAATGAAAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAGAA
* ** * * * * **
3601554 TCTGATTAGGGTGGTAACCATACGTTAGATAGGAAGGAGGCAG-A
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGA-AAAGAA
* *
3601598 TTTGACCAGGGTGGTAACCATACGTCAAATCGGAATGAAAAGAAA
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAG-AA
* ** **
3601643 TTTAATTAAAGTGGTAACCATACGTCAAATTAG-AATGAAAAGAAA
1 TTTGACCAGGGTGGTAACCATACGTCAAA-TAGAAATGAAAAG-AA
* * * * *** **
3601688 TCTGACCAGGGTGCTAACCATACATTAGACA-AGAAA-GAGCTGGG
1 TTTGACCAGGGTGGTAACCATACGTCA-A-ATAGAAATGAAAAGAA
* * *
3601732 TTTGACCAGGGTGGTAACCATACATCAAATCGGAATGAAAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAGAA
* * **
3601776 TCTGACTAGGGTGGTAACCATACGTCAGACA-AGAAA-GAGGCAG-A
1 TTTGACCAGGGTGGTAACCATACGTCA-A-ATAGAAATGA-AAAGAA
* * *
3601820 TTTGACCAAGGTGGTAACCATACATCAGACA-AGAAA-GAGACAG-A
1 TTTGACCAGGGTGGTAACCATACGTCA-A-ATAGAAATGA-AAAGAA
*
3601864 TTTAACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAGAA
* * * * ** *
3601908 TCTAACC-GAGGTGGTAACCATACATCAGATAGGAAA-GAGGAGAG
1 TTTGACCAG-GGTGGTAACCATACGTCAAATA-GAAATGAAAAGAA
3601952 TTTGACCAGG
1 TTTGACCAGG
3601962 CCCTAACACC
Statistics
Matches: 605, Mismatches: 158, Indels: 86
0.71 0.19 0.10
Matches are distributed among these distances:
41 2 0.00
42 8 0.01
43 27 0.04
44 410 0.68
45 140 0.23
46 13 0.02
47 5 0.01
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (44 bp):
TTTGACCAGGGTGGTAACCATACGTCAAATAGAAATGAAAAGAA
Found at i:3601961 original size:88 final size:88
Alignment explanation
Indices: 3601114--3601961 Score: 569
Period size: 88 Copynumber: 9.6 Consensus size: 88
3601104 GCAAATCGTT
* * * * * *
3601114 TGACAAGGGTGGTAACCATATGTCAAACAAGAAAGAGGCA-AATTTGACCAGGATGGTAACCAAT
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGG-AGAGTTTGACCAGGGTGGTAACC-AT
*
3601178 ACGTCAAATCAG-ATTGAAAAGAATC
64 ACGTCAAAT-AGAAATGAAAAGAATC
* * * * ***
3601203 TAACCAGGGTGGTAACCATATGTTAGAT-AGAAA-AGAGACAGATTTGACCATAATGGTAACCAT
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAG-GAGAG-TTTGACCAGGGTGGTAACCAT
* * *
3601266 ACGTCAAATCGGAATGAAAATAATC
64 ACGTCAAATAGAAATGAAAAGAATC
* * * * * *
3601291 TGACTAGGGTGGTAACCATACGTCAGATAAGAAGGATGTAGA-CTTGACCTGAGTGGTAACCATA
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGA-GGAGAGTTTGACCAGGGTGGTAACCATA
* * * *
3601355 CATTAAATCAG-AATAAAAAGAATT
65 CGTCAAAT-AGAAATGAAAAGAATC
* * * * *
3601379 TGACCAGGGTGGTAACCATACGTCACACAAGAAAAAGGTAGA-TTTAACCAAGGTGGTAACCATA
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGG-AGAGTTTGACCAGGGTGGTAACCATA
* *
3601443 TGTCAAATCTG-AATGAAAAGAAATC
65 CGTCAAAT-AGAAATGAAAAG-AATC
* * * * * *
3601468 TGACCAGGGTGGTAACCATACGTTAGACAAGAAGGAGGCG-GATTTGACCAGCGTGTTAACCATA
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGGAGAG-TTTGACCAGGGTGGTAACCATA
*
3601532 CGTCAAATCGAAATGAAAAGAATC
65 CGTCAAATAGAAATGAAAAGAATC
** * * *
3601556 TGATTAGGGTGGTAACCATACGTTAGATAGGAAGGAGGCAGA-TTTGACCAGGGTGGTAACCATA
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGG-AGAGTTTGACCAGGGTGGTAACCATA
* * *
3601620 CGTCAAATCGGAATGAAAAGAAATT
65 CGTCAAATAGAAATGAAAAG-AATC
* ** ** * * * ** * * *
3601645 TAATTAAAGTGGTAACCATACGTCAAATTAGAATGAAAAGAAATCTGACCAGGGTGCTAACCATA
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGGAG-AGTTTGACCAGGGTGGTAACCATA
* * *** ** *
3601710 CATTAGACA-AGAAA-GAGCTGGGTT
65 CGTCA-A-ATAGAAATGAAAAGAATC
* * ** * ** * * *
3601734 TGACCAGGGTGGTAACCATACATCAAATCGGAATGAAAAGAATCTGACTAGGGTGGTAACCATAC
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGGAGAGTTTGACCAGGGTGGTAACCATAC
** *
3601799 GTCAGACA-AGAAA-GAGGCAG-ATT
66 GTCA-A-ATAGAAATGA-AAAGAATC
* * * * *
3601822 TGACCAAGGTGGTAACCATACATCAGACAAGAAAGA-GACAGATTTAACCAGGGTGGTAACCATA
1 TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGGAGAG-TTTGACCAGGGTGGTAACCATA
3601886 CGTCAAATAGAAATGAAAAGAATC
65 CGTCAAATAGAAATGAAAAGAATC
* * *
3601910 TAACC-GAGGTGGTAACCATACATCAGATAGGAAAGAGGAGAGTTTGACCAGG
1 TGACCAG-GGTGGTAACCATACGTCAGATAAGAAAGAGGAGAGTTTGACCAGG
3601962 CCCTAACACC
Statistics
Matches: 611, Mismatches: 121, Indels: 55
0.78 0.15 0.07
Matches are distributed among these distances:
86 1 0.00
87 15 0.02
88 370 0.61
89 190 0.31
90 29 0.05
91 5 0.01
92 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (88 bp):
TGACCAGGGTGGTAACCATACGTCAGATAAGAAAGAGGAGAGTTTGACCAGGGTGGTAACCATAC
GTCAAATAGAAATGAAAAGAATC
Found at i:3602052 original size:48 final size:48
Alignment explanation
Indices: 3601938--3602053 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 48
3601928 TACATCAGAT
** * *
3601938 AGGAAAGAGGAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
1 AGGAAAGAAAAGAGTTTGACCAGGCCCTAAAACCAATACAGTCAAACA
*** *
3601986 AGGAAAGATTTGAGTTTGATCAGGCCCTAAAACCAATACAGTCAAACA
1 AGGAAAGAAAAGAGTTTGACCAGGCCCTAAAACCAATACAGTCAAACA
* * *
3602034 AGGGATGAAAAGATTTTGAC
1 AGGAAAGAAAAGAGTTTGAC
3602054 AAGATACAGT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (48 bp):
AGGAAAGAAAAGAGTTTGACCAGGCCCTAAAACCAATACAGTCAAACA
Found at i:3603886 original size:16 final size:16
Alignment explanation
Indices: 3603856--3603885 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3603846 ATTCTTTCCA
3603856 TTTTTTTTGCTTTTTC
1 TTTTTTTTGCTTTTTC
3603872 TTTTTTTT-CTTTTT
1 TTTTTTTTGCTTTTT
3603886 TTTATCACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTTTTTGCTTTTTC
Found at i:3604210 original size:27 final size:27
Alignment explanation
Indices: 3604178--3604231 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
3604168 TTTTCATGCT
*
3604178 CTTTTTTTCTTTCT-TTTCCTATTTTTTG
1 CTTTTGTT-TTTCTCTTT-CTATTTTTTG
*
3604206 CTTTTGTTTTTCTCTTTTTATTTTTT
1 CTTTTGTTTTTCTCTTTCTATTTTTT
3604232 ATTTTGAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.04, C:0.15, G:0.04, T:0.78
Consensus pattern (27 bp):
CTTTTGTTTTTCTCTTTCTATTTTTTG
Found at i:3607934 original size:20 final size:20
Alignment explanation
Indices: 3607909--3608145 Score: 105
Period size: 20 Copynumber: 10.8 Consensus size: 20
3607899 TTTTACCCAG
*
3607909 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTCA
* * *
3607929 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
3607949 ATGTATCGATACATTCTGTCTTTTTACTCA
1 ATGTATCGATACA--------TTTT--TCA
*
3607979 GACGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
* * * *
3608000 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
3608020 ATATATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
*
3608040 ATGTATTGATACATTTTGTCTTTTTACCCA
1 ATGTATCGATACA-------TTTTT---CA
*
3608070 GATGTATTGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
* * * *
3608091 ATGCATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
3608111 ATGCATTGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
3608131 ATGTATCGATACATT
1 ATGTATCGATACATT
3608146 ATGTCTTTTT
Statistics
Matches: 166, Mismatches: 29, Indels: 44
0.69 0.12 0.18
Matches are distributed among these distances:
20 116 0.70
21 5 0.03
23 4 0.02
24 5 0.03
27 5 0.03
28 2 0.01
30 4 0.02
31 25 0.15
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:3608014 original size:71 final size:71
Alignment explanation
Indices: 3607898--3608034 Score: 229
Period size: 71 Copynumber: 1.9 Consensus size: 71
3607888 GAAAGTCACA
* * * *
3607898 TTTTTACCCAGATGTATCGATACATTTTTTAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGACGTATCGATACATTTTTCAATATATCGATACATGTATGAATATATCGATACAT
3607963 TCTGTC
66 TCTGTC
*
3607969 TTTTTACTCAGACGTATCGATACATTTTTCAATATATCGATACATGTATGAATATATCGATACAT
1 TTTTTACCCAGACGTATCGATACATTTTTCAATATATCGATACATGTATGAATATATCGATACAT
3608034 T
66 T
3608035 TTTCAATGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (71 bp):
TTTTTACCCAGACGTATCGATACATTTTTCAATATATCGATACATGTATGAATATATCGATACAT
TCTGTC
Found at i:3608082 original size:91 final size:91
Alignment explanation
Indices: 3607909--3608195 Score: 376
Period size: 91 Copynumber: 3.2 Consensus size: 91
3607899 TTTTACCCAG
* * * * * * *
3607909 ATGTATCGATACATTTTTTAATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATTTTTCAATGTATCGATACATTATGTCTTTTT
* * *
3607974 ACTCAGACGTATCGATACATTTTTCA
66 ACCCAGATGTATTGATACATTTTTCA
* * * *
3608000 ATATATCGATACATGTATGAATATATCGATACATTTTTCAATGTATTGATACATTTTGTCTTTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATTTTTCAATGTATCGATACATTATGTCTTTTT
3608065 ACCCAGATGTATTGATACATTTTTCA
66 ACCCAGATGTATTGATACATTTTTCA
* * * *
3608091 ATGCATCGATACATGTATGAATGCATTGATACATTCTTCAATGTATCGATACATTATGTCTTTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATTTTTCAATGTATCGATACATTATGTCTTTTT
* * *
3608156 TCCTAGATGTATTGATACATATTTCA
66 ACCCAGATGTATTGATACATTTTTCA
*
3608182 ATGTATTGATACAT
1 ATGTATCGATACAT
3608196 CCAGTTAAAA
Statistics
Matches: 170, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
91 170 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (91 bp):
ATGTATCGATACATGTATGAATGTATCGATACATTTTTCAATGTATCGATACATTATGTCTTTTT
ACCCAGATGTATTGATACATTTTTCA
Found at i:3610025 original size:73 final size:73
Alignment explanation
Indices: 3609906--3610052 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
3609896 ATGAATTCAG
3609906 GGTGATTTTTCAAAGTTTGTCACACCCTTACTTCATGTGCTCTGCCAGCAGCGCATTTCACCCGA
1 GGTGATTTTTCAAAGTTTGTCACACCCTTACTTCATGTGCTCTGCCAGCAGCGCATTTCACCCGA
3609971 ATTTGAGA
66 ATTTGAGA
3609979 GGTGATTTTTCAAAGTTTGTCACACCCTTACTTCATGTGCTCTGCCAGCAGCGCATTTCACCCGA
1 GGTGATTTTTCAAAGTTTGTCACACCCTTACTTCATGTGCTCTGCCAGCAGCGCATTTCACCCGA
3610044 ATTTGAGA
66 ATTTGAGA
3610052 G
1 G
3610053 TCTATTCCAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (73 bp):
GGTGATTTTTCAAAGTTTGTCACACCCTTACTTCATGTGCTCTGCCAGCAGCGCATTTCACCCGA
ATTTGAGA
Found at i:3620433 original size:13 final size:13
Alignment explanation
Indices: 3620415--3620439 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3620405 CATAAAGTGT
3620415 TGTATCGATACAA
1 TGTATCGATACAA
3620428 TGTATCGATACA
1 TGTATCGATACA
3620440 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3620437 original size:33 final size:33
Alignment explanation
Indices: 3620395--3620461 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3620385 TTCAACGATT
3620395 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
3620428 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
3620461 T
1 T
3620462 TCCAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Done.