Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold35
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4812169
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 17994 characters in sequence are not A, C, G, or T
File 27 of 30
Found at i:4197823 original size:21 final size:20
Alignment explanation
Indices: 4197797--4197865 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 20
4197787 TTCATAATTC
4197797 GTATCGATACAAATAGTAAAT
1 GTATCGATACAAA-AGTAAAT
* **
4197818 GTATCGATACATAAGT-GTT
1 GTATCGATACAAAAGTAAAT
*
4197837 GTATCGATATAAACAGTAAAT
1 GTATCGATACAAA-AGTAAAT
4197858 GTATCGAT
1 GTATCGAT
4197866 GCATAAGAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.31
20 6 0.15
21 21 0.54
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (20 bp):
GTATCGATACAAAAGTAAAT
Found at i:4197841 original size:19 final size:19
Alignment explanation
Indices: 4197817--4197885 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
4197807 AAATAGTAAA
4197817 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
* * **
4197836 TGTATCGATATAAACAGTAAA
1 TGTATCGATACATA-AGT-GT
* *
4197857 TGTATCGATGCATAAGAGT
1 TGTATCGATACATAAGTGT
4197876 TGTATCGATA
1 TGTATCGATA
4197886 TAATGTGTCG
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 21 0.57
20 5 0.14
21 11 0.30
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:4197886 original size:40 final size:40
Alignment explanation
Indices: 4197797--4197888 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
4197787 TTCATAATTC
* * *
4197797 GTATCGATACAAATAGTAAATGTATCGATACATAAGTGTT
1 GTATCGATATAAACAGTAAATGTATCGATACATAAGAGTT
*
4197837 GTATCGATATAAACAGTAAATGTATCGATGCATAAGAGTT
1 GTATCGATATAAACAGTAAATGTATCGATACATAAGAGTT
4197877 GTATCGATATAA
1 GTATCGATATAA
4197889 TGTGTCGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (40 bp):
GTATCGATATAAACAGTAAATGTATCGATACATAAGAGTT
Found at i:4197951 original size:20 final size:20
Alignment explanation
Indices: 4197926--4197985 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
4197916 CTGCCAAGAA
4197926 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
4197946 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
4197966 TTTGTATCGATACATCTGAT
1 AATGTATCGATACAT-TGAT
4197986 AATTTTACTC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 31 0.86
21 5 0.14
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:4203072 original size:79 final size:79
Alignment explanation
Indices: 4202967--4203165 Score: 254
Period size: 79 Copynumber: 2.5 Consensus size: 79
4202957 GAGATAATAA
* * ** * * *
4202967 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGC
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATAC
*
4203032 TTAGGAAATAAAAT
66 TTAGGAAATAAAAC
* * *
4203046 CGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATAC
* * *
4203111 TTTGGGAATAAAGC
66 TTAGGAAATAAAAC
**
4203125 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTA
4203166 CCCTCGATGA
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 103 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATAC
TTAGGAAATAAAAC
Found at i:4203165 original size:28 final size:29
Alignment explanation
Indices: 4203125--4203196 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
4203115 GGAATAAAGC
**
4203125 CGGGGTTGGAGTATCCCCTCG-GAGGTAA
1 CGGGGTTGGAGTATCCCCTCGAGAAATAA
4203153 CGGGGTTGGAGTA--CCCTCGATGAAATAA
1 CGGGGTTGGAGTATCCCCTCGA-GAAATAA
*
4203181 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
4203197 TCGATTGTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 6 0.16
28 30 0.81
30 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTCGAGAAATAA
Found at i:4203254 original size:52 final size:51
Alignment explanation
Indices: 4203185--4203318 Score: 187
Period size: 52 Copynumber: 2.6 Consensus size: 51
4203175 AAATAACGAG
* * *
4203185 GTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGA-AAATAAAATCGGA
** *
4203237 GTTGGAGTATCCCCGATTAAAAGAAAATTGGTGTTTTGAAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTATGA-AAAATTGGTGTTTTGAAAATAAAATCGGA
*
4203289 GTTGGAGTATCCCCGATTATGAACAATTGG
1 GTTGGAGTATCCCCGATTATGAAAAATTGG
4203319 GAAACTTAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
51 7 0.10
52 50 0.69
53 15 0.21
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGAAAATAAAATCGGA
Found at i:4205635 original size:13 final size:13
Alignment explanation
Indices: 4205617--4205642 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4205607 ACAAAGATCG
4205617 ATGTATCGATACA
1 ATGTATCGATACA
4205630 ATGTATCGATACA
1 ATGTATCGATACA
4205643 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4205653 original size:21 final size:21
Alignment explanation
Indices: 4205629--4205670 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
4205619 GTATCGATAC
4205629 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
4205650 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
4205671 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:4205705 original size:13 final size:13
Alignment explanation
Indices: 4205687--4205738 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
4205677 AGCTTCGTAG
4205687 CGATACATTGTAT
1 CGATACATTGTAT
4205700 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
4205719 CGATACATTGTAT
1 CGATACATTGTAT
4205732 CGATACA
1 CGATACA
4205739 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:4205719 original size:19 final size:19
Alignment explanation
Indices: 4205695--4205776 Score: 104
Period size: 19 Copynumber: 4.6 Consensus size: 19
4205685 AGCGATACAT
*
4205695 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
4205714 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
4205727 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
4205746 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
4205765 TGTACCGATACA
1 TGTATCGATACA
4205777 TTTTCTGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 5 0.09
18 1 0.02
19 39 0.71
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:4205728 original size:32 final size:32
Alignment explanation
Indices: 4205687--4205757 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
4205677 AGCTTCGTAG
4205687 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
4205719 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
4205751 CGATACA
1 CGATACA
4205758 ACACTTATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:4205863 original size:21 final size:21
Alignment explanation
Indices: 4205837--4205891 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
4205827 TTGGGACCTT
4205837 GTATCGATACATTCTACAAAC
1 GTATCGATACATTCTACAAAC
*
4205858 GTATCGATACATTCTACAAAT
1 GTATCGATACATTCTACAAAC
4205879 GTATCGATACATT
1 GTATCGATACATT
4205892 TGGATAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (21 bp):
GTATCGATACATTCTACAAAC
Found at i:4206913 original size:24 final size:24
Alignment explanation
Indices: 4206886--4206949 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
4206876 ACTATGTTAA
4206886 ATTATCTTTAATTTAAT-TATATAT
1 ATTATCTTTAATTTAATATAT-TAT
* * *
4206910 ATTAACTTTGATATTAATATATTTT
1 ATTATCTTTAAT-TTAATATATTAT
*
4206935 ATTAT-TTTTATTTAA
1 ATTATCTTTAATTTAA
4206950 AAATAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
23 4 0.12
24 15 0.45
25 11 0.33
26 3 0.09
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (24 bp):
ATTATCTTTAATTTAATATATTAT
Found at i:4214029 original size:18 final size:18
Alignment explanation
Indices: 4214006--4214067 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
4213996 ATCCTTACGT
*
4214006 AAAAAAATTAATGTATAC
1 AAAAAAATTAATATATAC
* *
4214024 AAAAAAATT-CTCT-TAC
1 AAAAAAATTAATATATAC
*
4214040 GTAAAAAATTAATATATAC
1 -AAAAAAATTAATATATAC
*
4214059 GAAAAAATT
1 AAAAAAATT
4214068 TAAAATTCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
16 3 0.09
17 10 0.29
18 19 0.54
19 3 0.09
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (18 bp):
AAAAAAATTAATATATAC
Found at i:4214058 original size:35 final size:35
Alignment explanation
Indices: 4213992--4214067 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
4213982 ATTTTATGAG
*
4213992 AAAAA-TCCTTACGTAAAAAAATTAATGTATACAA
1 AAAAATTCCTTACGTAAAAAAATTAATATATACAA
*
4214026 AAAAATTCTCTTACGT-AAAAAATTAATATATACGA
1 AAAAATTC-CTTACGTAAAAAAATTAATATATACAA
4214061 AAAAATT
1 AAAAATT
4214068 TAAAATTCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 5 0.13
35 26 0.68
36 7 0.18
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (35 bp):
AAAAATTCCTTACGTAAAAAAATTAATATATACAA
Found at i:4214566 original size:26 final size:28
Alignment explanation
Indices: 4214501--4214566 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 28
4214491 TCATTATTTC
4214501 ATTTCTAAAATTTT-GTTTATGATTATTA
1 ATTT-TAAAATTTTAGTTTATGATTATTA
4214529 ATTTT-AAA-TTTAGTTT-T-ATT-TTA
1 ATTTTAAAATTTTAGTTTATGATTATTA
4214552 ATTTTGAAAATTTTA
1 ATTTT-AAAATTTTA
4214567 TGTTACTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
23 8 0.24
24 3 0.09
25 7 0.21
26 11 0.32
27 1 0.03
28 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (28 bp):
ATTTTAAAATTTTAGTTTATGATTATTA
Found at i:4217560 original size:15 final size:14
Alignment explanation
Indices: 4217536--4217565 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
4217526 CTCAAGGTGA
4217536 AGAGTGGAGGTCTC
1 AGAGTGGAGGTCTC
4217550 AGAGTTGGAGGTCTC
1 AGAG-TGGAGGTCTC
4217565 A
1 A
4217566 AGGTGAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.23, C:0.13, G:0.40, T:0.23
Consensus pattern (14 bp):
AGAGTGGAGGTCTC
Found at i:4217647 original size:52 final size:52
Alignment explanation
Indices: 4217569--4217684 Score: 214
Period size: 52 Copynumber: 2.2 Consensus size: 52
4217559 GGTCTCAAGG
*
4217569 TGAACAGTGATGTATCGATACTATTCACAATGTATCGATACATGAACAGTAA
1 TGAACAGTGATGTATCGATACTATTCACAATGTATCGATACATAAACAGTAA
*
4217621 TGAACAGTGATGTATCGATACTATTCACAATGTATCGATACATAAATAGTAA
1 TGAACAGTGATGTATCGATACTATTCACAATGTATCGATACATAAACAGTAA
4217673 TGAACAGTGATG
1 TGAACAGTGATG
4217685 AACAGTGAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (52 bp):
TGAACAGTGATGTATCGATACTATTCACAATGTATCGATACATAAACAGTAA
Found at i:4220515 original size:20 final size:20
Alignment explanation
Indices: 4220489--4220543 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
4220479 CTGCCAGTTT
*
4220489 CATGTATCGATACAATTCAG
1 CATGTATCGATACAATTCAA
* * *
4220509 TATGTATTGATACAA-TGAA
1 CATGTATCGATACAATTCAA
4220528 CATGTATCGATACAAT
1 CATGTATCGATACAAT
4220544 GTATCAATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTCAA
Found at i:4223146 original size:13 final size:13
Alignment explanation
Indices: 4223128--4223166 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
4223118 TAGTAACCCT
*
4223128 TGTATCGATACAG
1 TGTATCGATACAA
*
4223141 TGTATCAATACAA
1 TGTATCGATACAA
*
4223154 TATATCGATACAA
1 TGTATCGATACAA
4223167 AGATCCTTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4228718 original size:13 final size:13
Alignment explanation
Indices: 4228700--4228739 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
4228690 TCCAATGAAC
4228700 ATGTATCGATACA
1 ATGTATCGATACA
*
4228713 ATGTATCAATACA
1 ATGTATCGATACA
4228726 ATGTATCGATACA
1 ATGTATCGATACA
4228739 A
1 A
4228740 AGCATAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4229548 original size:60 final size:60
Alignment explanation
Indices: 4229481--4229601 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
4229471 ACTTAAAAAA
4229481 ATTATAGATGGAACGAACCTATCCTAAATACCCACCCTCAGCATAAAAGCGGACTCAGTG
1 ATTATAGATGGAACGAACCTATCCTAAATACCCACCCTCAGCATAAAAGCGGACTCAGTG
4229541 ATTATAGATGGAACGAACCTATCCTAAATACCCACCCTCAGCATAAAAGCGGACTCAGTG
1 ATTATAGATGGAACGAACCTATCCTAAATACCCACCCTCAGCATAAAAGCGGACTCAGTG
4229601 A
1 A
4229602 CAACCTAGGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (60 bp):
ATTATAGATGGAACGAACCTATCCTAAATACCCACCCTCAGCATAAAAGCGGACTCAGTG
Found at i:4230215 original size:156 final size:156
Alignment explanation
Indices: 4229735--4230478 Score: 608
Period size: 156 Copynumber: 4.8 Consensus size: 156
4229725 TATCCACCCA
* * * * * * *
4229735 ATCCTAAACATCCACCTTCGGCAAAAAAGCAAACGCAATAACGACCTAGAAGTTAGTTCTAAAAA
1 ATCCTAAATATCCACCTTCGGCATAAAAGTAGACCCAATAACGACCTAGGAGTTAGTTCTAAAGA
* * * * ** * * * * **
4229800 ATTACAAAAAT-GCATCTAGGGGATACCTTTGACGTAAAAGTA-CCTGATAACCCTAAAAGACAA
66 ATTATAAAAATACCCT-TAAGGGATACCTTCAACATAGAAGTATCCTGATACCCCTAAAGGACTT
* * * * * *
4229863 AAAAAAAATTATAGATGGAACGAACCT
130 AAAAAAGATTTTAAAAGGGATGAACCT
* * * * *** * * * * *
4229890 ATCCTAAATACCCACCCTCGACATAAAATTAGACCTGGTGACAACTTAGGACTTAGTTCTAAAAA
1 ATCCTAAATATCCACCTTCGGCATAAAAGTAGACCCAATAACGACCTAGGAGTTAGTTCTAAAGA
* * * * * **
4229955 ATTATGAAAAT-GCCTCTAAGGGATACTTTCGACATAAAAGTAAT-C-GATACCCCTAAAAAACT
66 ATTATAAAAATACCCT-TAAGGGATACCTTCAACATAGAAGT-ATCCTGATACCCCTAAAGGACT
*
4230017 TAAAAAAGAATTTAAAAGGGATGAACCT
129 TAAAAAAGATTTTAAAAGGGATGAACCT
* *
4230045 ATCCTAAATATCCACCTTCGGCATAATAGTAGACCCGATAACGACCTAGGAGTTAGTTCTAAA-A
1 ATCCTAAATATCCACCTTCGGCATAAAAGTAGACCCAATAACGACCTAGGAGTTAGTTCTAAAGA
* * ** * ** * **
4230109 ATTTATAAAAAT-GCCTTTAGAGGATACCTTCAATGTAGAAGTGTTTTGATACCCTTGGAGGACT
66 A-TTATAAAAATACCCTTAAG-GGATACCTTCAACATAGAAGTATCCTGATACCCCTAAAGGACT
*
4230173 TAAAAAAGATTTTAAAAGGGATGGACCT
129 TAAAAAAGATTTTAAAAGGGATGAACCT
** * * *
4230201 ATCCTAAATATCCACCTTTAGCATAAAAGTGGACCCAATAATGACCTAGGAGTTCGTTCTAAAGA
1 ATCCTAAATATCCACCTTCGGCATAAAAGTAGACCCAATAACGACCTAGGAGTTAGTTCTAAAGA
* *
4230266 ATTATGAAAATACCCTTAAGGGATACCTTCGACATAGAAGTATCCTGATACCCCTAAAGGACTTA
66 ATTATAAAAATACCCTTAAGGGATACCTTCAACATAGAAGTATCCTGATACCCCTAAAGGACTTA
* * *
4230331 AAAAATATTTTAAAATGGATTAACCT
131 AAAAAGATTTTAAAAGGGATGAACCT
* * * * * * * *
4230357 ATCCTAAATATCCACCTTCGGCATAAAAG-CGAACCCAGTGATGATCTAAGAGTTGGTTCTAAAA
1 ATCCTAAATATCCACCTTCGGCATAAAAGTAG-ACCCAATAACGACCTAGGAGTTAGTTCTAAAG
** * ** * *
4230421 AATTACGAAAATAACCC-TAAGGGATTCCTTTGACGTAAAAGTA-CCTGATACCCCTAAA
65 AATTATAAAAAT-ACCCTTAAGGGATACCTTCAACATAGAAGTATCCTGATACCCCTAAA
4230479 AAGGCTTGAA
Statistics
Matches: 480, Mismatches: 99, Indels: 20
0.80 0.17 0.03
Matches are distributed among these distances:
154 6 0.01
155 213 0.44
156 249 0.52
157 12 0.03
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (156 bp):
ATCCTAAATATCCACCTTCGGCATAAAAGTAGACCCAATAACGACCTAGGAGTTAGTTCTAAAGA
ATTATAAAAATACCCTTAAGGGATACCTTCAACATAGAAGTATCCTGATACCCCTAAAGGACTTA
AAAAAGATTTTAAAAGGGATGAACCT
Found at i:4232955 original size:167 final size:162
Alignment explanation
Indices: 4232431--4233202 Score: 797
Period size: 167 Copynumber: 4.7 Consensus size: 162
4232421 GAATTATTTT
* * * * * * **
4232431 AAACTGATTTAATTTGAATTTAATAACAATATTAGATG-A-TTTAAAAATTTTAAACCAAGAAAA
1 AAACTAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
*** * * *
4232494 ATCCCCCTGAAAACATTTTACGGAGTAGAAAACTTGTTTTTTTGAAAATAGGGAGACTTC---AA
66 ATCCCCCTGAAAACA-TTTACGGAGTAGAAAAC-TCCATATTTGAAAATA-GAAGAATTCAAGAA
*
4232556 AAAAATGAAAAACTTATGAAAATAAATGAATTTTTTG-
128 AAAAATGAAAAA--TATGAAAATGAATGAA-TTTTTGA
* *
4232593 AAACTAATTTAATATGAATTAAATAATAATATTTGATGAATTTT-AAAATTATAAACCAAGAAAA
1 AAACTAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
* * * *
4232657 ATCTCCCTGGAAACATTTACGAAGTAGAAAACTCCGTAATTTGAAAATAG-AGAAATTCAAGGAA
66 ATCCCCCTGAAAACATTTACGGAGTAGAAAACTCCAT-ATTTGAAAATAGAAG-AATTCAA-GAA
* *
4232721 AAAATTGAGAAATGAATGAAAATGAATGAATTTTTGA
128 AAAAATGAAAAAT--ATGAAAATGAATGAATTTTTGA
* * * *
4232758 AAACTAATTTAATGTGAATTAAATAATAATATTTGATGAATTTTGAAAATTAAAAACCAATAAAA
1 AAACTAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
* * *
4232823 ATCCCCCTGAAAACATTTACGGAATAGAAAACTTCATATTTCGAAAATAAGAAGAATTTAAGGAA
66 ATCCCCCTGAAAACATTTACGGAGTAGAAAACTCCATATTT-GAAAAT-AGAAGAATTCAA-GAA
* *
4232888 AAAAATGAAAAACTCATGAAAATGAATAAATTTTTAA
128 AAAAATGAAAAA-T-ATGAAAATGAATGAATTTTTGA
* * *
4232925 AAAATAATTTACTATGAAATAAATAATAATATTTGATGAATTTTCAAAATTAAAAACCAAGAAAA
1 AAACTAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
* * * * * *
4232990 ATCTACCCTGAAAAAATTTAAGGAGTACAAAACTCCATATTTTAGAAATAGAGAGAATTCAAGTA
66 ATC-CCCCTGAAAACATTTACGGAGTAGAAAACTCCATATTTGA-AAATAGA-AGAATTCAAGAA
4233055 AAAAATG--AAA-AT-----TGAATGAATTTTTGA
128 AAAAATGAAAAATATGAAAATGAATGAATTTTTGA
* * *
4233082 AAATTGATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAA
1 AAACTAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
* * * *
4233147 AT-CCCCTCGAAAA-ATTTATGGAGTAGAAAACTCCGTATTTGGGAAATAGAGGAATT
66 ATCCCCCT-GAAAACATTTACGGAGTAGAAAACTCCATATTT-GAAAATAGAAGAATT
4233203 TCAAAAGAAA
Statistics
Matches: 528, Mismatches: 61, Indels: 50
0.83 0.10 0.08
Matches are distributed among these distances:
154 5 0.01
155 35 0.07
156 5 0.01
157 75 0.14
160 2 0.00
161 7 0.01
162 61 0.12
163 34 0.06
164 9 0.02
165 76 0.14
166 55 0.10
167 117 0.22
168 47 0.09
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.30
Consensus pattern (162 bp):
AAACTAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
ATCCCCCTGAAAACATTTACGGAGTAGAAAACTCCATATTTGAAAATAGAAGAATTCAAGAAAAA
AATGAAAAATATGAAAATGAATGAATTTTTGA
Found at i:4234397 original size:85 final size:85
Alignment explanation
Indices: 4234304--4234984 Score: 669
Period size: 85 Copynumber: 8.0 Consensus size: 85
4234294 ATCGAGGGAA
*** ** *
4234304 TAAGGGGTTTATTGGGGACTGAGCTGACAGGTAAATAATGAGATGAAGGTTGACTGAAGACTGAG
1 TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACTGAAGACTGAG
**
4234369 CTGTTAAGTCACCATAGGTG
66 CTGACAAGTCACCATAGGTG
* * * * * * *
4234389 TAACGGGTTTACTAGGGAATGAGCCGACAGGTAAACAATAAGATGAAGGTTGACTGGAGACTAAG
1 TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACTGAAGACTGAG
*
4234454 CTGACAGGTCACCATAGGTG
66 CTGACAAGTCACCATAGGTG
* * * * * * * *
4234474 CAAGGGGTTTACTAGTGACTGAGCTAACAAGTAAACAATGAGACGAAGGTTGA-TGGGAGACTAA
1 TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACT-GAAGACTGA
4234538 GCTGACAAGTCACCA-AGG-G
65 GCTGACAAGTCACCATAGGTG
* ** * *
4234557 ATAAGGGGTTTACCAAGGACTGAGCTGACAGGTAAACAA-GAAGATGAAAGTTGACCGAAGACTG
1 -TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATG-AGATGAAGGTTGACTGAAGACTG
* * *
4234621 AGTTGACAGGTCACCGTAGGTG
64 AGCTGACAAGTCACCATAGGTG
* ** * * *
4234643 TAATGGGTTTATTAGGGACTGAGCCAATAGGTAAACAA-AAGATGAAGGTTGA-TCGAAGACTAA
1 TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACT-GAAGACTGA
4234706 GCTGACAAGTCACCATAGGTG
65 GCTGACAAGTCACCATAGGTG
** * ** * * *
4234727 TAAGAAGTTTACCGGGGACAAAGCCAAGAGGTAAATAATGAGATGAAGGTTGACT-AGAGATTGA
1 TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACTGA-AGACTGA
* * *
4234791 GCTAACAGGTCACCATAGATG
65 GCTGACAAGTCACCATAGGTG
* * * *
4234812 TAAGGGGTTTACC-GAGGACTGAGCCGATAGGTAAACAATGATATGAAGGTTAACT-AGAGACTG
1 TAAGGGGTTTACCAG-GGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACTGA-AGACTG
*
4234875 AACTGACAAGTCACCATAGGTG
64 AGCTGACAAGTCACCATAGGTG
* * * * ** *
4234897 TAAGGGGTTTATCAGGGACTGACCCAACAGGTAAACAGTGATATGAAGGTTGACCAAAGATTGAG
1 TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACTGAAGACTGAG
* *
4234962 CTAACAGGTCACCATAGGTG
66 CTGACAAGTCACCATAGGTG
4234982 TAA
1 TAA
4234985 AAGATTTACT
Statistics
Matches: 492, Mismatches: 91, Indels: 26
0.81 0.15 0.04
Matches are distributed among these distances:
83 2 0.00
84 134 0.27
85 352 0.72
86 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.30, T:0.21
Consensus pattern (85 bp):
TAAGGGGTTTACCAGGGACTGAGCCAACAGGTAAACAATGAGATGAAGGTTGACTGAAGACTGAG
CTGACAAGTCACCATAGGTG
Found at i:4235002 original size:338 final size:338
Alignment explanation
Indices: 4234344--4235018 Score: 792
Period size: 338 Copynumber: 2.0 Consensus size: 338
4234334 GTAAATAATG
* ** * *
4234344 AGATGAAGGTTGACTGAAGACTGAGCTGTTAAGTCACCATAGGTGTAACGGGTTTACTAGGGAAT
1 AGATGAAGGTTGACTGAAGACTAAGCTGACAAGTCACCATAGGTGTAACGAGTTTACCAGGGAAT
* * * * *
4234409 GAGCCGACAGGTAAACAATAAGATGAAGGTTGACTGGAGACTAAGCTGACAGGTCACCATAGGTG
66 AAGCCAACAGGTAAACAATAAGATGAAGGTTGACTAGAGACTAAGCTAACAGGTCACCATAGATG
* * * *
4234474 CAAGGGGTTTACTAGTGACTGAGCTAACAAGTAAACAATGAGACGAAGGTTGATGGGAGACTAAG
131 CAAGGGGTTTACGAGTGACTGAGCCAACAAGTAAACAATGAGACGAAGGTTAATGAGAGACTAAG
* **
4234539 CTGACAAGTCACCAAGGGATAAGGGGTTTACCAAGGACTGAGCTGACAGGTAAACAAGAAGATGA
196 CTGACAAGTCACCAAGGGATAAGGGGTTTACCAAGGACTGACCCAACAGGTAAACAAGAAGATGA
* * * * ** * *
4234604 AAGTTGACCGAAGACTGAGTTGACAGGTCACCGTAGGTGTAATGGGTTTATTAGGGACTGAGCCA
261 AAGTTGACCAAAGACTGAGCTAACAGGTCACCATAGGTGTAAAAGATTTACTAGGGACTGAGCCA
4234669 ATAGGTAAACAAA
326 ATAGGTAAACAAA
*
4234682 AGATGAAGGTTGA-TCGAAGACTAAGCTGACAAGTCACCATAGGTGTAA-GAAGTTTACCGGGGA
1 AGATGAAGGTTGACT-GAAGACTAAGCTGACAAGTCACCATAGGTGTAACG-AGTTTACCAGGGA
* * * * *
4234745 CA-AAGCCAAGAGGTAAATAATGAGATGAAGGTTGACTAGAGATTGAGCTAACAGGTCACCATAG
64 -ATAAGCCAACAGGTAAACAATAAGATGAAGGTTGACTAGAGACTAAGCTAACAGGTCACCATAG
* * * * * *
4234809 ATGTAAGGGGTTTACCGAG-GACTGAGCCGATAGGTAAACAATGATATGAAGGTTAACT-AGAGA
128 ATGCAAGGGGTTTA-CGAGTGACTGAGCCAACAAGTAAACAATGAGACGAAGGTTAA-TGAGAGA
* *
4234872 CTGAA-CTGACAAGTCACCATAGGTG-TAAGGGGTTTATCAGGGACTGACCCAACAGGTAAAC-A
191 CT-AAGCTGACAAGTCACCA-AGG-GATAAGGGGTTTACCAAGGACTGACCCAACAGGTAAACAA
* * * *
4234934 GTGATATGAAGGTTGACCAAAGATTGAGCTAACAGGTCACCATAGGTGTAAAAGATTTACTA-GG
253 G-AAGATGAAAGTTGACCAAAGACTGAGCTAACAGGTCACCATAGGTGTAAAAGATTTACTAGGG
***
4234998 ACTGAGTTGATAGGTAAACAA
317 ACTGAGCCAATAGGTAAACAA
4235019 TGGTAGAAGG
Statistics
Matches: 282, Mismatches: 46, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
337 2 0.01
338 190 0.67
339 89 0.32
340 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (338 bp):
AGATGAAGGTTGACTGAAGACTAAGCTGACAAGTCACCATAGGTGTAACGAGTTTACCAGGGAAT
AAGCCAACAGGTAAACAATAAGATGAAGGTTGACTAGAGACTAAGCTAACAGGTCACCATAGATG
CAAGGGGTTTACGAGTGACTGAGCCAACAAGTAAACAATGAGACGAAGGTTAATGAGAGACTAAG
CTGACAAGTCACCAAGGGATAAGGGGTTTACCAAGGACTGACCCAACAGGTAAACAAGAAGATGA
AAGTTGACCAAAGACTGAGCTAACAGGTCACCATAGGTGTAAAAGATTTACTAGGGACTGAGCCA
ATAGGTAAACAAA
Found at i:4235015 original size:254 final size:251
Alignment explanation
Indices: 4234298--4235020 Score: 781
Period size: 254 Copynumber: 2.8 Consensus size: 251
4234288 TAGGTCATCG
** * *
4234298 AGGGAATAAGGGGTTTATTGGGGACTGAGCTGACAGGTAAATAATGAGATGAAGGTTGACTGAAG
1 AGGG-ATAAGGGGTTTACCGAGGACTGAGCTGACAGGTAAACAATGAGATGAAGGTTGACTGAAG
** * *
4234363 ACTGAGCTGTTAAGTCACCATAGGTGTAACGGGTTTA-CTAGGGAATGAGCCGACAGGTAAACAA
65 ACTGAGCTGACAAGTCACCATAGGTGTAACGGGTTTATC-AGGGACTGAGCCAACAGGTAAAC-A
* * * **
4234427 TAAGATGAAGGTTGACTGGAGACTAAGCTGACAGGTCACCATAGGTGCAAGGGGTTTACTAGTGA
128 TAAGATGAAGGTTGACCGAAGACTAAGCTGACAGGTCACCATAGGTGTAA-AAGTTTACTAG-GA
* * *
4234492 CTGAGCTAACAAGTAAACAATGAGACGAAGGTTGATGGGAGACTAAGCTGACAAGTCACCA
191 CTGAGCTAACAGGTAAACAATGAGACGAAGGTTGATGAGAGACTAAGCTAACAAGTCACCA
* * *
4234553 AGGGATAAGGGGTTTACCAAGGACTGAGCTGACAGGTAAACAA-GAAGATGAAAGTTGACCGAAG
1 AGGGATAAGGGGTTTACCGAGGACTGAGCTGACAGGTAAACAATG-AGATGAAGGTTGACTGAAG
* * * * * * *
4234617 ACTGAGTTGACAGGTCACCGTAGGTGTAATGGGTTTATTAGGGACTGAGCCAATAGGTAAACAAA
65 ACTGAGCTGACAAGTCACCATAGGTGTAACGGGTTTATCAGGGACTGAGCCAACAGGTAAACATA
* * ** *
4234682 AGATGAAGGTTGATCGAAGACTAAGCTGACAAGTCACCATAGGTGTAAGAAGTTTACCGGGGACA
130 AGATGAAGGTTGACCGAAGACTAAGCTGACAGGTCACCATAGGTGTAA-AAGTTTA-CTAGGACT
* * * * * * * *
4234747 AAGCCAAGAGGTAAATAATGAGATGAAGGTTGACT-AGAGATTGAGCTAACAGGTCACCA
193 GAGCTAACAGGTAAACAATGAGACGAAGGTTGA-TGAGAGACTAAGCTAACAAGTCACCA
* * * * *
4234806 TAGATG-TAAGGGGTTTACCGAGGACTGAGCCGATAGGTAAACAATGATATGAAGGTTAACT-AG
1 -AG-GGATAAGGGGTTTACCGAGGACTGAGCTGACAGGTAAACAATGAGATGAAGGTTGACTGA-
* * *
4234869 AGACTGAACTGACAAGTCACCATAGGTGTAAGGGGTTTATCAGGGACTGACCCAACAGGTAAACA
63 AGACTGAGCTGACAAGTCACCATAGGTGTAACGGGTTTATCAGGGACTGAGCCAACAGGTAAACA
* * * * * *
4234934 GTGATATGAAGGTTGACCAAAGATTGAGCTAACAGGTCACCATAGGTGTAAAAGATTTACTAGGA
128 -TAAGATGAAGGTTGACCGAAGACTAAGCTGACAGGTCACCATAGGTGTAAAAG-TTTACTAGGA
* * *
4234999 CTGAGTTGATAGGTAAACAATG
191 CTGAGCTAACAGGTAAACAATG
4235021 GTAGAAGGTG
Statistics
Matches: 385, Mismatches: 73, Indels: 21
0.80 0.15 0.04
Matches are distributed among these distances:
253 102 0.26
254 232 0.60
255 51 0.13
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (251 bp):
AGGGATAAGGGGTTTACCGAGGACTGAGCTGACAGGTAAACAATGAGATGAAGGTTGACTGAAGA
CTGAGCTGACAAGTCACCATAGGTGTAACGGGTTTATCAGGGACTGAGCCAACAGGTAAACATAA
GATGAAGGTTGACCGAAGACTAAGCTGACAGGTCACCATAGGTGTAAAAGTTTACTAGGACTGAG
CTAACAGGTAAACAATGAGACGAAGGTTGATGAGAGACTAAGCTAACAAGTCACCA
Found at i:4236485 original size:82 final size:79
Alignment explanation
Indices: 4236376--4236601 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 79
4236366 GGTGAAAATC
* * *
4236376 GGGGTTGGAGTATCCCCGAGATTAAAAAAAAATTAATGTTTTGAAAATGAAAACAGGGTTGAAGT
1 GGGGTTGGAGTATCCCCGAGA-T--GAAAAAATTAATATTTTGAAAATAAAAACAGGGTTGAAGT
4236441 ATCCCATCGGAAGTGAT
63 ATCCCATCGGAAGTGAT
* * * * *
4236458 GGGGTTGGAGTATCCCTGTGATGAAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGAGATGAAAAAATTAATATTTTGAAAATAAAAACAGGGTTGAAGTATC
* ** *
4236523 CCCTCAAAATTGAT
66 CCATCGGAAGTGAT
* *** * ** * *
4236537 GGGATCAAAGTATCCCTGAGATGAAAATTTTAATATTTTTG-AAATAAAAATAGGGTTGGAGTAT
1 GGGGTTGGAGTATCCCCGAGATGAAAAAATTAATA-TTTTGAAAATAAAAACAGGGTTGAAGTAT
4236601 C
65 C
4236602 TCCTCGAAAA
Statistics
Matches: 125, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
79 100 0.80
80 5 0.04
81 1 0.01
82 19 0.15
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCGAGATGAAAAAATTAATATTTTGAAAATAAAAACAGGGTTGAAGTATC
CCATCGGAAGTGAT
Found at i:4236513 original size:79 final size:79
Alignment explanation
Indices: 4236402--4236601 Score: 249
Period size: 79 Copynumber: 2.5 Consensus size: 79
4236392 CGAGATTAAA
* * * * * ** * ***
4236402 AAAAAATTAATGTTTTGAAAATGAAAACAGGGTTGAAGTATCCCATCGGAAGTGATGGGGTTGGA
1 AAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCATCAAAAGTGATGGGATCAAA
*
4236467 GTATCCCTGTGATG
66 GTATCCCTGAGATG
* *
4236481 AAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCCTCAAAATTGATGGGATCAAA
1 AAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCATCAAAAGTGATGGGATCAAA
4236546 GTATCCCTGAGATG
66 GTATCCCTGAGATG
*
4236560 AAAATTTTAATATTTTTG-AAATAAAAATAGGGTTGGAGTATC
1 AAAAATTTAATA-TTTTGAAAATAAAAATAGGGTTGGAGTATC
4236602 TCCTCGAAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 100 0.95
80 5 0.05
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (79 bp):
AAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCATCAAAAGTGATGGGATCAAA
GTATCCCTGAGATG
Found at i:4236643 original size:79 final size:79
Alignment explanation
Indices: 4236466--4236618 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 79
4236456 ATGGGGTTGG
**
4236466 AGTATCCCTGTGATGAAAAA-TTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCCTCAA
1 AGTATCCCTAAGATGAAAAATTTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCCTCAA
**
4236530 AATTGATGGGATCAA
66 AAACGAT-GGATCAA
* *
4236545 AGTATCCCTGAGATG-AAAATTTTAATATTTTTG-AAATAAAAATAGGGTTGGAGTATCTCCTCG
1 AGTATCCCTAAGATGAAAAATTTTAATA-TTTTGAAAATAAAAATAGGGTTGGAGTATCCCCTC-
4236608 AAAAAACGATG
64 -AAAAACGATG
4236619 TTAGAATATC
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
78 4 0.06
79 49 0.74
80 6 0.09
81 7 0.11
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (79 bp):
AGTATCCCTAAGATGAAAAATTTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCCTCAA
AAACGATGGATCAA
Found at i:4242286 original size:52 final size:52
Alignment explanation
Indices: 4242208--4242337 Score: 217
Period size: 52 Copynumber: 2.5 Consensus size: 52
4242198 CCCGAAATAT
* *
4242208 GAAAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTTCATGTATCGATACATTTTATAATGTATCGATACATCTGG
4242260 GAAAATTTGCCTTCATGTATCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTTCATGTATCGATACATTTTATAATGTATCGATACATCTGG
*
4242312 GCAAATTTG-CTTGCATGTATCGATAC
1 GAAAATTTGCCTT-CATGTATCGATAC
4242338 CAAGATCAGT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
51 3 0.04
52 71 0.96
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (52 bp):
GAAAATTTGCCTTCATGTATCGATACATTTTATAATGTATCGATACATCTGG
Found at i:4242351 original size:52 final size:51
Alignment explanation
Indices: 4242208--4242359 Score: 200
Period size: 52 Copynumber: 2.9 Consensus size: 51
4242198 CCCGAAATAT
*
4242208 GAAAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGG
1 GAAAATTTGCTTGCATGTATCGATACA-TTTATAGTGTATCGATACATCTGG
*
4242260 GAAAATTTGCCTT-CATGTATCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTG-CTTGCATGTATCGATACA-TTTATAGTGTATCGATACATCTGG
* **
4242312 GCAAATTTGCTTGCATGTATCGATACCA-AGATCAGTGTATCGATACAT
1 GAAAATTTGCTTGCATGTATCGATA-CATTTAT-AGTGTATCGATACAT
4242360 TTGAGTAATG
Statistics
Matches: 90, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
51 5 0.06
52 81 0.90
53 4 0.04
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (51 bp):
GAAAATTTGCTTGCATGTATCGATACATTTATAGTGTATCGATACATCTGG
Found at i:4242746 original size:20 final size:20
Alignment explanation
Indices: 4242721--4242758 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4242711 TGTCTACAAT
4242721 GTATCGATACATTCACTAAC
1 GTATCGATACATTCACTAAC
*
4242741 GTATCGATACATTTACTA
1 GTATCGATACATTCACTA
4242759 TTTATATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
GTATCGATACATTCACTAAC
Found at i:4243815 original size:48 final size:48
Alignment explanation
Indices: 4243751--4244088 Score: 372
Period size: 48 Copynumber: 6.9 Consensus size: 48
4243741 GTTAGACTTG
* * * * *
4243751 AAGGTGACAATGTGCTGATTCAAGGCCGGCGACATTGGTCTTAAAGAC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAC
* **
4243799 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAC
* * * * * *
4243847 GAGGTACCAATGTGTTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-C
* * * *
4243896 AAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTAGACTTCAAGGTGCC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA--AGAC
* * *
4243947 AAAGGTGCCAATATGCTGATTTAAGGCCAGTGATATTGGACTTAAAGATG
1 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-C
* * * *
4243997 AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAC
* *
4244044 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
4244089 AGAAGACGCC
Statistics
Matches: 242, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
47 2 0.01
48 157 0.65
49 38 0.16
50 2 0.01
51 2 0.01
52 41 0.17
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAC
Found at i:4244015 original size:149 final size:148
Alignment explanation
Indices: 4243799--4244079 Score: 445
Period size: 149 Copynumber: 1.9 Consensus size: 148
4243789 TCTTAAAGAC
* * * *
4243799 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGGTACCAATGTGTTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTACCAATGTGCTG
* * *
4243864 ATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGAT
66 ATTCAAGGCCAGCTACATTGGACTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
4243929 ATTAGACTTCAAGGTGCCA
130 ATTAGACTTCAAGGTGCCA
* * *
4243948 AAGGTGCCAATATGCTGATTTAAGGCCAGTGATATTGGACTTAAAGATGAAGTGCCAATGTGCTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTACCAATGTGCTG
* *
4244013 ATTCAAGGCCAGCTACATTGGACTTAAGGACAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA
66 ATTCAAGGCCAGCTACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
4244078 TT
131 TT
4244080 GGGCTTAAAA
Statistics
Matches: 120, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
148 34 0.28
149 86 0.72
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (148 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTACCAATGTGCTG
ATTCAAGGCCAGCTACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
TTAGACTTCAAGGTGCCA
Found at i:4244168 original size:28 final size:28
Alignment explanation
Indices: 4244134--4244258 Score: 135
Period size: 28 Copynumber: 4.4 Consensus size: 28
4244124 GTTTGCATCA
* * *
4244134 ACTTGTGTGCTTTTGAAGGTTGCCGCTG
1 ACTTGTGGGCTTTTAAAGGTTGCCACTG
* * * *
4244162 ACCTGTGGGC-TTTAAAGATCGCTACTG
1 ACTTGTGGGCTTTTAAAGGTTGCCACTG
*
4244189 ACTTATGGGCTTTTAAAGGTTGCCACTG
1 ACTTGTGGGCTTTTAAAGGTTGCCACTG
* *
4244217 ACTTGTGGGCTTTTGAAAAGGGTGCCACTA
1 ACTTGTGGGCTTTT--AAAGGTTGCCACTG
4244247 ACTTGTGGGCTT
1 ACTTGTGGGCTT
4244259 AAAAGGAAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
27 20 0.25
28 35 0.44
30 24 0.30
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.34
Consensus pattern (28 bp):
ACTTGTGGGCTTTTAAAGGTTGCCACTG
Found at i:4244243 original size:30 final size:30
Alignment explanation
Indices: 4244185--4244449 Score: 171
Period size: 29 Copynumber: 8.7 Consensus size: 30
4244175 AAAGATCGCT
* *
4244185 ACTGACTTATGGGCTTTT--AAAGGTTGCC
1 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
4244213 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
1 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
* ** * *
4244243 ACTAACTTGTGGGCTTAAAAGGAAAAAGAGTGCT
1 ACTGACTTGTGGGCTT---TTG-AAAAGGGTGCC
* * * ** *
4244277 ACGGAGTTGTGAGCTTACAAAAGAAAACGAGTGCC
1 ACTGACTTGTGGGCTT----TTGAAAA-GGGTGCC
* * * * *
4244312 ACGGAGTTGTGGACTTTGGAAAA-GATGCC
1 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
* **
4244341 ACTGACTTGTGAGCTTCGGAAAAGGGTGCC
1 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
* * * *
4244371 ACTGATTTGTGGAC-TTTGAAAAAGATGCC
1 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
* *
4244400 ACTGACTTGTGGGC-TTTGAAAAAGATGCC
1 ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
4244429 ACTGACTTGTGGGCTTTTGAA
1 ACTGACTTGTGGGCTTTTGAA
4244450 GGGTGAGGAA
Statistics
Matches: 192, Mismatches: 35, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
28 17 0.09
29 74 0.39
30 46 0.24
31 5 0.03
33 1 0.01
34 25 0.13
35 24 0.12
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (30 bp):
ACTGACTTGTGGGCTTTTGAAAAGGGTGCC
Found at i:4244287 original size:34 final size:35
Alignment explanation
Indices: 4244249--4244323 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
4244239 TGCCACTAAC
* *
4244249 TTGTGGGCTTA-AAAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
* *
4244283 TTGTGAGCTTACAAAAGAAAACGAGTGCCACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
4244318 TTGTGG
1 TTGTGG
4244324 ACTTTGGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 10 0.29
35 25 0.71
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:4244381 original size:59 final size:58
Alignment explanation
Indices: 4244307--4244445 Score: 188
Period size: 59 Copynumber: 2.4 Consensus size: 58
4244297 AAGAAAACGA
* * * *
4244307 GTGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACTGACTTGTGAGCTTCGGAAAAGG
1 GTGCCACTGACTTGTGGACTTTGAAAAAGATGCCACTGACTTGTGAGCTT-GGAAAAAG
* * *
4244366 GTGCCACTGATTTGTGGACTTTGAAAAAGATGCCACTGACTTGTGGGCTTTGAAAAAG
1 GTGCCACTGACTTGTGGACTTTGAAAAAGATGCCACTGACTTGTGAGCTTGGAAAAAG
* *
4244424 ATGCCACTGACTTGTGGGCTTT
1 GTGCCACTGACTTGTGGACTTT
4244446 TGAAGGGTGA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
58 25 0.35
59 46 0.65
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (58 bp):
GTGCCACTGACTTGTGGACTTTGAAAAAGATGCCACTGACTTGTGAGCTTGGAAAAAG
Found at i:4244448 original size:59 final size:59
Alignment explanation
Indices: 4244154--4244449 Score: 183
Period size: 59 Copynumber: 4.9 Consensus size: 59
4244144 TTTTGAAGGT
* * * * * *
4244154 TGCCGCTGACCTGTGGGCTTT---AAAGATCGCTACTGACTTATGGGCTTTT--AAAGGT
1 TGCCACTGACTTGTGGGCTTTGAAAAAGAT-GCCACTGACTTGTGGGCTTTTGAAAAAGA
* * * **
4244209 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAAAGGAAAAAGA
1 TGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCACTGACTTGTGGGCTT---TTGAAAAAGA
* * * * * * * * * *
4244272 GTGCTACGGAGTTGTGAGCTTACAAAAGAAAACGAGTGCCACGGAGTTGTGGAC-TTTGGAAAAG
1 -TGCCACTGACTTGTGGGCTT-----TGAAAAAGA-TGCCACTGACTTGTGGGCTTTTGAAAAAG
4244336 A
59 A
* * * * * *
4244337 TGCCACTGACTTGTGAGCTTCGGAAAAGGGTGCCACTGATTTGTGGAC-TTTGAAAAAGA
1 TGCCACTGACTTGTGGGCTT-TGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGA
4244396 TGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTGAA
1 TGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTGAA
4244450 GGGTGAGGAA
Statistics
Matches: 183, Mismatches: 41, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
55 16 0.09
56 3 0.02
58 38 0.21
59 55 0.30
60 6 0.03
63 6 0.03
64 31 0.17
65 7 0.04
68 7 0.04
69 14 0.08
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (59 bp):
TGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGA
Found at i:4245901 original size:12 final size:12
Alignment explanation
Indices: 4245886--4245919 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
4245876 TTGTTATTAT
4245886 TGTTTTTTTTTG
1 TGTTTTTTTTTG
4245898 TGTTTTTTTTTG
1 TGTTTTTTTTTG
4245910 TGTTTATTTT
1 TGTTT-TTTT
4245920 ATTTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82
Consensus pattern (12 bp):
TGTTTTTTTTTG
Found at i:4251579 original size:52 final size:52
Alignment explanation
Indices: 4251431--4251559 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
4251421 CGAAATATGA
*
4251431 AAATTTGCCTACATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
* *
4251483 AAATTT-CGCTGCATGTATTGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGC-CTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
4251535 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
4251560 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
51 1 0.01
52 69 0.97
53 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:4251586 original size:13 final size:13
Alignment explanation
Indices: 4251568--4251592 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4251558 CAAAGATCAG
4251568 TGTATCGATACAA
1 TGTATCGATACAA
4251581 TGTATCGATACA
1 TGTATCGATACA
4251593 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4251675 original size:20 final size:19
Alignment explanation
Indices: 4251635--4251687 Score: 88
Period size: 20 Copynumber: 2.7 Consensus size: 19
4251625 TAGCTTAAAT
4251635 TGTATCGATACAAAATTTA
1 TGTATCGATACAAAATTTA
*
4251654 TGTATCGATACAATATTTTA
1 TGTATCGATACAA-AATTTA
4251674 TGTATCGATACAAA
1 TGTATCGATACAAA
4251688 TCGTTGAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (19 bp):
TGTATCGATACAAAATTTA
Found at i:4251986 original size:20 final size:20
Alignment explanation
Indices: 4251961--4251998 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4251951 TGTCTACAAT
4251961 GTATCGATACATTCACTAAC
1 GTATCGATACATTCACTAAC
*
4251981 GTATCGATACATTTACTA
1 GTATCGATACATTCACTA
4251999 TTTATATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
GTATCGATACATTCACTAAC
Found at i:4252693 original size:93 final size:91
Alignment explanation
Indices: 4252493--4252708 Score: 274
Period size: 93 Copynumber: 2.3 Consensus size: 91
4252483 AAAAATAGAC
* **
4252493 TTTGTGATGCATCAATACCATCTTAGTGGTTGGATGAAGGGGATATGACTAGGAACATGGGGTCA
1 TTTGTGAGGCATCAATACCATC-TAGTGGTTGGATGAAAAGGATATGACTAGGAACATGGGGTCA
* *
4252558 GGGTATCCTTGCACTAAGAAATCATGT
65 GAGTATCCTTCCACTAAGAAATCATGT
* * * *
4252585 TTTATGAGGCATCAATACCATCTAGTGGTTGGATGAAAAGGATATGATTGGGAACATATGGG-CA
1 TTTGTGAGGCATCAATACCATCTAGTGGTTGGATGAAAAGGATATGACTAGGAACAT-GGGGTCA
* *
4252649 -ATTCTCCCTTTCCACTAAGGAAATCATGT
65 GAGTAT-CC-TTCCACTAA-GAAATCATGT
4252678 TTTGTGAGGCATCAATACCATCTAGTGGTTG
1 TTTGTGAGGCATCAATACCATCTAGTGGTTG
4252709 AGAAAGAAGA
Statistics
Matches: 108, Mismatches: 12, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
90 2 0.02
91 35 0.32
92 31 0.29
93 40 0.37
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (91 bp):
TTTGTGAGGCATCAATACCATCTAGTGGTTGGATGAAAAGGATATGACTAGGAACATGGGGTCAG
AGTATCCTTCCACTAAGAAATCATGT
Found at i:4252726 original size:93 final size:90
Alignment explanation
Indices: 4252569--4252736 Score: 250
Period size: 93 Copynumber: 1.8 Consensus size: 90
4252559 GGTATCCTTG
*
4252569 CACTAAGAAATCATGTTTTATGAGGCATCAATACCATCTAGTGGTTGGATGAAAAGGATATGATT
1 CACTAAGAAATCATGTTTTATGAGGCATCAATACCATCTAGTGGTTGGA-GAAAAGAATATGATT
4252634 GGGAACATATGGGCAATTCTCCCTTTC
65 GGGAA-ATATGGGCAATTCTCCCTTTC
*
4252661 CACTAAGGAAATCATGTTTTGTGAGGCATCAATACCATCTAGTGGTT-GAGAAAGAAGAACT-TG
1 CACTAA-GAAATCATGTTTTATGAGGCATCAATACCATCTAGTGGTTGGAG-AA-AAGAA-TATG
4252724 ATTGGGAAATATG
62 ATTGGGAAATATG
4252737 TGTTTTCCTC
Statistics
Matches: 70, Mismatches: 2, Indels: 8
0.88 0.03 0.10
Matches are distributed among these distances:
91 1 0.01
92 15 0.21
93 53 0.76
94 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.29
Consensus pattern (90 bp):
CACTAAGAAATCATGTTTTATGAGGCATCAATACCATCTAGTGGTTGGAGAAAAGAATATGATTG
GGAAATATGGGCAATTCTCCCTTTC
Found at i:4254634 original size:14 final size:13
Alignment explanation
Indices: 4254617--4254647 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
4254607 ATTTCATGTT
4254617 TTTTTCATCTTTTC
1 TTTTTCAT-TTTTC
4254631 TTTTTCATTTTTC
1 TTTTTCATTTTTC
4254644 TTTT
1 TTTT
4254648 CTTTTCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTCATTTTTC
Found at i:4254647 original size:18 final size:18
Alignment explanation
Indices: 4254624--4254669 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
4254614 GTTTTTTTCA
4254624 TCTTTTCTTTTTCATTTT
1 TCTTTTCTTTTTCATTTT
4254642 TCTTTTC-TTTTCATTTT
1 TCTTTTCTTTTTCATTTT
*
4254659 T-TTTTGTTTTT
1 TCTTTTCTTTTT
4254670 TTATATTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 15 0.58
18 7 0.27
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.80
Consensus pattern (18 bp):
TCTTTTCTTTTTCATTTT
Found at i:4254669 original size:17 final size:17
Alignment explanation
Indices: 4254593--4254669 Score: 60
Period size: 17 Copynumber: 4.8 Consensus size: 17
4254583 CTATTTACAG
4254593 TTTCTTTTTTTTTCA--
1 TTTCTTTTTTTTTCATT
*
4254608 TTTCATGTTTTTTTCA--
1 TTTC-TTTTTTTTTCATT
4254624 --TCTTTTCTTTTTCATT
1 TTTCTTTT-TTTTTCATT
*
4254640 TTTCTTTTCTTTTCATT
1 TTTCTTTTTTTTTCATT
4254657 TTT-TTTTGTTTTT
1 TTTCTTTT-TTTTT
4254670 TTATATTTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
13 3 0.06
14 9 0.18
15 4 0.08
16 14 0.27
17 15 0.29
18 6 0.12
ACGTcount: A:0.06, C:0.13, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTCTTTTTTTTTCATT
Found at i:4261851 original size:155 final size:155
Alignment explanation
Indices: 4261527--4262435 Score: 595
Period size: 155 Copynumber: 5.8 Consensus size: 155
4261517 AAGAAAAAAC
** * * * * **
4261527 TGAACCTATCCCT-AATATGTACCCTCGGCATAGAAGCA-ATCCGATGACAAATTAGGACTTGGT
1 TGAACCTAT-CCTAAATATCCACCTTCGGCATAAAAGCAGACCCGGTGACAACCTAGGACTTGGT
** * ** * * ** * * * * *
4261590 TCTAAAAAAATTATGAAAATGCTCTTATAGGTATACCTTCAACCTAAAAATATCCTAGTAACCTT
65 TCT-AAAAAATTACAAAAATAC-C-CCTAGGGATACCTTCGATGTAAAAGTATCCCAATACCCCT
* * * * *
4261655 AAAAGACTTAAAAA-AAATTATAGATGGAA
127 AAAAGACTTAAAAAGGATTTA-AAAAGGGA
* * ** *
4261684 TGAACCTATCCTAAATA-CCTACCCTCGGCATAAAAGC-GAACCCGGTGATAAATTAGGACTCGG
1 TGAACCTATCCTAAATATCC-ACCTTCGGCATAAAAGCAG-ACCCGGTGACAACCTAGGACTTGG
* * * * * *
4261747 TTTTAAAGAAATTA-TAAAATGCCCCTAGGAGATACCTTTGATGTAAAAGTAT-CTAACACCCCT
64 TTCTAAA-AAATTACAAAAATACCCCTAGG-GATACCTTCGATGTAAAAGTATCCCAATACCCCT
4261810 AAAAGACTTAAAAAGGATTTAAAAAGGGA
127 AAAAGACTTAAAAAGGATTTAAAAAGGGA
* *** * * * *
4261839 TGAACATATCCTAAATATCCACCTTTTACATAAAAGCATACCCGGTGACGACCTAGGAGTTAGTT
1 TGAACCTATCCTAAATATCCACCTTCGGCATAAAAGCAGACCCGGTGACAACCTAGGACTTGGTT
* * * * ** * *
4261904 CTAGAAAATTACAAAAATATCTCTATGGGATACCTTCGACGTAAAA--ATGCCTGATAACCTTAA
66 CTAAAAAATTACAAAAATACCCCTA-GGGATACCTTCGATGTAAAAGTAT-CCCAATACCCCTAA
* * * * *
4261967 AAGACTTAAAAA-CAATTATAGATGGAA
129 AAGACTTAAAAAGGATTTA-AAAAGGGA
* * ** * * * *
4261994 TGAACCTATCCTATATACCCACCCACAGCGTAAAATCAGA-CCGGTGGCAACCTAGGACTTGGTT
1 TGAACCTATCCTAAATATCCACCTTCGGCATAAAAGCAGACCCGGTGACAACCTAGGACTTGGTT
* * * * *
4262058 TTAAAAAATTACGAAAATGCCCTTAAGGGATACCTTCGACT-TAGAAGTATCCCAATACCCCTAA
66 CTAAAAAATTACAAAAATACCCCT-AGGGATACCTTCGA-TGTAAAAGTATCCCAATACCCCTAA
* *
4262122 AGGACTTAAAAAGGATTTTAAAAGGGA
129 AAGACTTAAAAAGGATTTAAAAAGGGA
* * * * * ** * *
4262149 TGAACCTATCCTAAATATCCACCTTTGGCATAAAAGCGGACTCAGTAATGACCTAGGAGTTGGTC
1 TGAACCTATCCTAAATATCCACCTTCGGCATAAAAGCAGACCCGGTGACAACCTAGGACTTGGTT
* * * * **
4262214 CTAAAAAATTACAAAAATATCCCTAAGCGATACCTTCGATGTAGAAGTATCCCGATACAGCTAAA
66 CTAAAAAATTACAAAAATACCCCT-AGGGATACCTTCGATGTAAAAGTATCCCAATACCCCTAAA
* * *
4262279 AGACTTAAAAAAGATTTTAAAAGAGA
130 AGACTTAAAAAGGATTTAAAAAGGGA
*** ** * *
4262305 TGAACCTATCCTAAATATCCACCTTCGGCATAAAAG-AGGACTTAGTGATGACCTAAGAGTTGGT
1 TGAACCTATCCTAAATATCCACCTTCGGCATAAAAGCA-GACCCGGTGACAACCTAGGACTTGGT
* * * * * * ** *
4262369 TTTGAAAAATTATAAAAATACCCCTAAAGGATACCTTTGACGTAAAAGTA-CCTGATACCTCTAA
65 TCTAAAAAATTACAAAAATACCCCT-AGGGATACCTTCGATGTAAAAGTATCCCAATACCCCTAA
4262433 AAG
129 AAG
4262436 GGCTTCAAAA
Statistics
Matches: 592, Mismatches: 138, Indels: 46
0.76 0.18 0.06
Matches are distributed among these distances:
153 2 0.00
154 64 0.11
155 234 0.40
156 224 0.38
157 39 0.07
158 29 0.05
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (155 bp):
TGAACCTATCCTAAATATCCACCTTCGGCATAAAAGCAGACCCGGTGACAACCTAGGACTTGGTT
CTAAAAAATTACAAAAATACCCCTAGGGATACCTTCGATGTAAAAGTATCCCAATACCCCTAAAA
GACTTAAAAAGGATTTAAAAAGGGA
Found at i:4262224 original size:310 final size:311
Alignment explanation
Indices: 4261622--4262252 Score: 817
Period size: 310 Copynumber: 2.0 Consensus size: 311
4261612 TCTTATAGGT
* *
4261622 ATACCTTCAACCTAAAAATATCCTAGTAACCTTAAAAGACTTAAAAAAAATTATAGATGGAATGA
1 ATACCTTCGACCTAAAAATAGCCTAGTAACCTTAAAAGACTTAAAAAAAATTATAGATGGAATGA
* * * * *
4261687 ACCTATCCTAAATACCTACCCTCGGCATAAAAGCGAACCCGGTGATAAATTAGGACTCGGTTTTA
66 ACCTATCCTAAATACCCACCCACAGCATAAAAGCGAACCCGGTGACAAACTAGGACTCGGTTTTA
* * *
4261752 AAGAAATTATAAAATGCCCCTAGGAGATACCTTTGATGTAAAAGTATCTAACACCCCTAAAAGAC
131 AAGAAATTAGAAAATGCCCCTAGGAGATACCTTCGATGTAAAAGTATCCAACACCCCTAAAAGAC
* *
4261817 TTAAAAAGGATTTAAAAAGGGATGAACATATCCTAAATATCCACCTTTTACATAAAAGCATACCC
196 TTAAAAAGGATTTAAAAAGGGATGAACATATCCTAAATATCCACCTTTGACATAAAAGCAGACCC
* * * * * * *
4261882 GGTGACGACCTAGGAGTTAGTTCTAGAAAATTACAAAAATATCTCTATGGG
261 AGTAACGACCTAGGAGTTAGTCCTAAAAAATTACAAAAATATCCCTAAGCG
* *
4261933 ATACCTTCGACGTAAAAAT-GCCT-GATAACCTTAAAAGACTTAAAAACAATTATAGATGGAATG
1 ATACCTTCGACCTAAAAATAGCCTAG-TAACCTTAAAAGACTTAAAAAAAATTATAGATGGAATG
* * * * * *
4261996 AACCTATCCTATATACCCACCCACAGCGTAAAATC-AGA-CCGGTGGCAACCTAGGACTTGGTTT
65 AACCTATCCTAAATACCCACCCACAGCATAAAAGCGA-ACCCGGTGACAAACTAGGACTCGGTTT
* * *
4262059 TAAA-AAATTACGAAAATGCCCTTAAGG-GATACCTTCGACT-TAGAAGTATCCCAATACCCCTA
129 TAAAGAAATTA-GAAAATGCCCCT-AGGAGATACCTTCGA-TGTAAAAGTAT-CCAACACCCCTA
* * * *
4262121 AAGGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGC
190 AAAGACTTAAAAAGGATTTAAAAAGGGATGAACATATCCTAAATATCCACCTTTGACATAAAAGC
* * * *
4262186 GGACTCAGTAATGACCTAGGAGTTGGTCCTAAAAAATTACAAAAATATCCCTAAGCG
255 AGACCCAGTAACGACCTAGGAGTTAGTCCTAAAAAATTACAAAAATATCCCTAAGCG
4262243 ATACCTTCGA
1 ATACCTTCGA
4262253 TGTAGAAGTA
Statistics
Matches: 276, Mismatches: 38, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
308 6 0.02
309 54 0.20
310 199 0.72
311 17 0.06
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (311 bp):
ATACCTTCGACCTAAAAATAGCCTAGTAACCTTAAAAGACTTAAAAAAAATTATAGATGGAATGA
ACCTATCCTAAATACCCACCCACAGCATAAAAGCGAACCCGGTGACAAACTAGGACTCGGTTTTA
AAGAAATTAGAAAATGCCCCTAGGAGATACCTTCGATGTAAAAGTATCCAACACCCCTAAAAGAC
TTAAAAAGGATTTAAAAAGGGATGAACATATCCTAAATATCCACCTTTGACATAAAAGCAGACCC
AGTAACGACCTAGGAGTTAGTCCTAAAAAATTACAAAAATATCCCTAAGCG
Found at i:4262252 original size:156 final size:156
Alignment explanation
Indices: 4261804--4262435 Score: 621
Period size: 156 Copynumber: 4.1 Consensus size: 156
4261794 AGTATCTAAC
* * ***
4261804 ACCCCTAAAAGACTTAAAAAGGATTTAAAAAGGGATGAACATATCCTAAATATCCACCTTTTACA
1 ACCCCTAAAAGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCGGCA
* * * * * * *
4261869 TAAAAGCATACCCGGTGACGACCTAGGAGTTAGTTCTAGAAAATTACAAAAATATCTCTATGGGA
66 TAAAAGCAGACTCAGTGACGACCTAGGAGTTGGTTCTAAAAAATTACAAAAATATCCCTAAGGGA
* * *
4261934 TACCTTCGACGTA-AA-AATGCCTGAT
131 TACCTTCGACTTAGAAGTAT-CCCGAT
* * ** * * * * * * ** * *
4261959 AACCTTAAAAGACTTAAAAACAATTATAGATGGAATGAACCTATCCTATATACCCACCCACAGCG
1 ACCCCTAAAAGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCGGCA
* * * * * * * *
4262024 TAAAATCAGAC-CGGTGGCAACCTAGGACTTGGTTTTAAAAAATTACGAAAAT-GCCCTTAAGGG
66 TAAAAGCAGACTCAGTGACGACCTAGGAGTTGGTTCTAAAAAATTACAAAAATATCCC-TAAGGG
*
4262087 ATACCTTCGACTTAGAAGTATCCCAAT
130 ATACCTTCGACTTAGAAGTATCCCGAT
* *
4262114 ACCCCTAAAGGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTTGGCA
1 ACCCCTAAAAGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCGGCA
* * * * *
4262179 TAAAAGCGGACTCAGTAATGACCTAGGAGTTGGTCCTAAAAAATTACAAAAATATCCCTAAGCGA
66 TAAAAGCAGACTCAGTGACGACCTAGGAGTTGGTTCTAAAAAATTACAAAAATATCCCTAAGGGA
4262244 TACCTTCGA-TGTAGAAGTATCCCGAT
131 TACCTTCGACT-TAGAAGTATCCCGAT
** * *
4262270 ACAGCTAAAAGACTTAAAAAAGATTTTAAAAGAGATGAACCTATCCTAAATATCCACCTTCGGCA
1 ACCCCTAAAAGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCGGCA
* * * * * * * *
4262335 TAAAAG-AGGACTTAGTGATGACCTAAGAGTTGGTTTTGAAAAATTATAAAAATACCCCTAAAGG
66 TAAAAGCA-GACTCAGTGACGACCTAGGAGTTGGTTCTAAAAAATTACAAAAATATCCCTAAGGG
* * * *
4262399 ATACCTTTGACGTAAAAGTA-CCTGAT
130 ATACCTTCGACTTAGAAGTATCCCGAT
*
4262425 ACCTCTAAAAG
1 ACCCCTAAAAG
4262436 GGCTTCAAAA
Statistics
Matches: 382, Mismatches: 87, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
153 2 0.01
154 52 0.14
155 135 0.35
156 190 0.50
157 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.25
Consensus pattern (156 bp):
ACCCCTAAAAGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCGGCA
TAAAAGCAGACTCAGTGACGACCTAGGAGTTGGTTCTAAAAAATTACAAAAATATCCCTAAGGGA
TACCTTCGACTTAGAAGTATCCCGAT
Found at i:4262615 original size:10 final size:10
Alignment explanation
Indices: 4262589--4262618 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
4262579 TAGGAATATA
*
4262589 AGAAATCATT
1 AGAAATTATT
4262599 AGAAATTATT
1 AGAAATTATT
4262609 AGAAATTATT
1 AGAAATTATT
4262619 GTGATGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.37
Consensus pattern (10 bp):
AGAAATTATT
Found at i:4263948 original size:12 final size:12
Alignment explanation
Indices: 4263933--4263997 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
4263923 TAGCTAGTTT
4263933 TCTATTTTCTTC
1 TCTATTTTCTTC
*
4263945 TCTATTTT-TCC
1 TCTATTTTCTTC
4263956 TCT-TTTTCTT-
1 TCTATTTTCTTC
* *
4263966 TCTTTTTTATTC
1 TCTATTTTCTTC
*
4263978 TCTCTTTTC-TC
1 TCTATTTTCTTC
4263989 TCTAATTTT
1 TCT-ATTTT
4263998 TCCTACCAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 7 0.16
11 17 0.40
12 19 0.44
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (12 bp):
TCTATTTTCTTC
Found at i:4263985 original size:23 final size:22
Alignment explanation
Indices: 4263937--4264001 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
4263927 TAGTTTTCTA
4263937 TTTTCTTCTCTATTTTTCCTCT
1 TTTTCTTCTCTATTTTTCCTCT
* *
4263959 TTTTCTT-TCTTTTTTATTCTCT
1 TTTTCTTCTCTATTTT-TCCTCT
4263981 CTTTTC-TCTCTAATTTTTCCT
1 -TTTTCTTCTCT-ATTTTTCCT
4264002 ACCAACTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
21 7 0.20
22 13 0.37
23 11 0.31
24 4 0.11
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTCTTCTCTATTTTTCCTCT
Found at i:4264747 original size:166 final size:168
Alignment explanation
Indices: 4264402--4264784 Score: 463
Period size: 166 Copynumber: 2.3 Consensus size: 168
4264392 ATAGTAGATG
*** * * * *
4264402 AATTTTAAAAATTTTTAACTAAGAAAAATTCCCCCG-AAAATATTTACGGAGTAGAAAACTCAGT
1 AATTTTAAAAATTAAAAACCAAGAAAAA-T-CCCCGAAAAATATTTACGAAGTAAAAAAATCAGT
* ** * * *
4264466 TTTTTTAAAATAGGGAGAATTCAAAGAAAAAATGAAAATGAAAATGAGTGAAAATGAATGAATTT
64 ATTTCGAAAATAAGGAGAATTCAAAGAAAAAATG-AAA-GAAAATCAGTGAAAATGAATAAATTT
*
4264531 TTGAAAAATAATTTAACATAAAATAAATAATAATATTTTATT
127 TTGAAAAATAATTTAACATAAAATAAATAATAATATTTTATA
4264573 AATTTTAAAAATTAAAAACCAAGAAAAATCCCCGTAAAAATATTTACGAAGTAAAAAATATCA-T
1 AATTTTAAAAATTAAAAACCAAGAAAAATCCCCG-AAAAATATTTACGAAGTAAAAAA-ATCAGT
* *
4264637 ATTTCGAAAATAAGGAGAATTCAAGGAAAAAATG-AA-AAACTCA-TGAAAATGAATAAATTTTT
64 ATTTCGAAAATAAGGAGAATTCAAAGAAAAAATGAAAGAAAATCAGTGAAAATGAATAAATTTTT
* * *
4264699 GAAAACTAATTTAATATGAAATAAATAATAATATTTGTA-A
129 GAAAAATAATTTAACATAAAATAAATAATAATATTT-TATA
* * *
4264739 AATTTTAAAAAATAAAAACCAAGAAAAATCCCCCAAAAAAATTTAC
1 AATTTTAAAAATTAAAAACCAAGAAAAATCCCCGAAAAATATTTAC
4264785 AGAGTAGAAA
Statistics
Matches: 186, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
165 11 0.06
166 83 0.45
167 7 0.04
169 7 0.04
170 1 0.01
171 74 0.40
172 3 0.02
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.28
Consensus pattern (168 bp):
AATTTTAAAAATTAAAAACCAAGAAAAATCCCCGAAAAATATTTACGAAGTAAAAAAATCAGTAT
TTCGAAAATAAGGAGAATTCAAAGAAAAAATGAAAGAAAATCAGTGAAAATGAATAAATTTTTGA
AAAATAATTTAACATAAAATAAATAATAATATTTTATA
Found at i:4266658 original size:164 final size:162
Alignment explanation
Indices: 4266405--4266815 Score: 418
Period size: 164 Copynumber: 2.5 Consensus size: 162
4266395 TTTAAACATC
* * * * * * * *
4266405 AAAATTCTTTAAATATTATCATCTAATTCCTATGAAATCATTTTTGAAAAATTCCTTTTAG-TTC
1 AAAATTCATCAAATATTATTAT-TAATTCATATTAAATCATTTTTCAAAAATT-CATTCAGTTTC
* * * * * ** *
4266469 GTGCATTATTGATTTTCTT-TTGAAATTTATTATATTTTCAAATTAC-AG-GGTTTTCTTCTCCG
64 ATTCATTTTTCATTTT-TTCTTGAAATTTATT-TATTTTCAAAATACAAGAATTTTTC-ACTCCG
* * *
4266531 TAATCTTTTTGGGAGGATTTTTATTGGTTTTTAATTTTT
126 TAA-ATTTTTGAGA-GATTTTTATTAGTTTTTAATTTTT
*
4266570 AAAATTCATCAAATATTATTATTATTTCATATTAAATCATTTTTCAAAAATTCATTCAGTTTCAT
1 AAAATTCATCAAATATTATTATTAATTCATATTAAATCATTTTTCAAAAATTCATTCAGTTTCAT
* * *
4266635 TCATTTTTCATTTTTTCTTGAAATTTATTTGTTTTTAAAATACGAAGAATTTTTCACTTCGTAAA
66 TCATTTTTCATTTTTTCTTGAAATTTATTTATTTTCAAAATAC-AAGAATTTTTCACTCCGTAAA
*
4266700 TTTTTGAGAGATTTTTCTTAGTTTTTAATTTTT
130 TTTTTGAGAGATTTTTATTAGTTTTTAATTTTT
* * * * *
4266733 AAAATTCATCAAATATTGTTATTTAGTACATGTTAAATC-TGTTTTCAAAAATTCATTCATTTTC
1 AAAATTCATCAAATATTATTA-TTAATTCATATTAAATCAT-TTTTCAAAAATTCATTCAGTTTC
* *
4266797 ATTTATTTTTTATTTTTTC
64 ATTCATTTTTCATTTTTTC
4266816 AAAATTTTTC
Statistics
Matches: 208, Mismatches: 31, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
163 61 0.29
164 114 0.55
165 28 0.13
166 5 0.02
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.52
Consensus pattern (162 bp):
AAAATTCATCAAATATTATTATTAATTCATATTAAATCATTTTTCAAAAATTCATTCAGTTTCAT
TCATTTTTCATTTTTTCTTGAAATTTATTTATTTTCAAAATACAAGAATTTTTCACTCCGTAAAT
TTTTGAGAGATTTTTATTAGTTTTTAATTTTT
Found at i:4266838 original size:19 final size:18
Alignment explanation
Indices: 4266801--4266839 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
4266791 ATTTTCATTT
**
4266801 ATTTTTTATTTTTTCAAA
1 ATTTTTTATTTTTGAAAA
4266819 ATTTTTCTATTTTTGAAAA
1 ATTTTT-TATTTTTGAAAA
4266838 AT
1 AT
4266840 CGACTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTTTTATTTTTGAAAA
Found at i:4266905 original size:163 final size:160
Alignment explanation
Indices: 4266563--4266919 Score: 368
Period size: 163 Copynumber: 2.2 Consensus size: 160
4266553 ATTGGTTTTT
* * *
4266563 AATTTTTAAAATTCATCAAATATTATTATTATTTCATATTAAATCATTTTTCAAAAATTCATTCA
1 AATTTTTAAAATTCATCAAATATTGTTATTAGTACATATTAAATCATTTTTCAAAAATTCATTCA
* *
4266628 GTTTCATTCATTTTTCATTTTTTCTTGAAATTTATTTGTTTTTAAAATACGAAGAATTTTTCACT
66 GTTTCATTCATTTTTCATTTTTTC-TAAAATTTATTTATTTTTAAAATAC--AGAATTTTTCACT
* **
4266693 TCGTAAATTTTTGAGAGATTTTTCTTAGTTTTT
128 TCGTAAATTTTTGAGAGATTTTTCTGAGTTTAA
*
4266726 AATTTTTAAAATTCATCAAATATTGTTATTTAGTACATGTTAAATC-TGTTTTCAAAAATTCATT
1 AATTTTTAAAATTCATCAAATATTGTTA-TTAGTACATATTAAATCAT-TTTTCAAAAATTCATT
* * * * *
4266790 CATTTTCATTTATTTTTTATTTTTTC-AAAATTT-TTCTATTTTTGAAAA-ATC-GACTTTTTTA
64 CAGTTTCATTCATTTTTCATTTTTTCTAAAATTTATT-TATTTTT-AAAATA-CAGAATTTTTCA
*
4266851 CTTCGTAAATATTTTCGTG-GCAATTTTTCTCGA-TTTAA
126 CTTCGTAAAT-TTTT-GAGAG--ATTTTTCT-GAGTTTAA
* * ** *
4266889 AATTTTGAAGATTCATCTGATATTGTCATTA
1 AATTTTTAAAATTCATCAAATATTGTTATTA
4266920 AATTCTCATA
Statistics
Matches: 164, Mismatches: 20, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
160 18 0.11
161 7 0.04
162 18 0.11
163 67 0.41
164 54 0.33
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (160 bp):
AATTTTTAAAATTCATCAAATATTGTTATTAGTACATATTAAATCATTTTTCAAAAATTCATTCA
GTTTCATTCATTTTTCATTTTTTCTAAAATTTATTTATTTTTAAAATACAGAATTTTTCACTTCG
TAAATTTTTGAGAGATTTTTCTGAGTTTAA
Found at i:4270773 original size:13 final size:13
Alignment explanation
Indices: 4270755--4270789 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
4270745 GAAAAAGGAG
*
4270755 AAAAAGAGAGAAA
1 AAAAAGAAAGAAA
4270768 AAAAAGAAAGAAA
1 AAAAAGAAAGAAA
*
4270781 AAAGAGAAA
1 AAAAAGAAA
4270790 TATAGCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:4272294 original size:175 final size:174
Alignment explanation
Indices: 4271838--4272307 Score: 667
Period size: 175 Copynumber: 2.7 Consensus size: 174
4271828 CAGAAATGAA
*
4271838 AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTCGAATTTCTAAT
1 AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTGGAATTTCTAAT
* * * *
4271903 ACTTCCATGGGTATCCGT-GAGATTATGAAAATTTTCAAAACTTTTCATATCTTTTCGGGTTTCC
66 ACTTCCATGGGTATCCGTGGAG-GTATGAGAATTTTCAAAACTTTTCATATCTTTTCAGGCTTCC
*
4271967 ATTAAGGTATGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
130 ATTAAAGTATGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
*
4272012 AAAATTATAAATAAATTCTTTTTCATCCAACAAAAATTATCACCTAAATTTTTTGGAATTTCTAA
1 AAAATAATAAATAAATTCTTTTTCATCCAA-AAAAATTATCACCTAAATTTTTTGGAATTTCTAA
* * * * *
4272077 TATTTCCATGGGTATTCGTGGGGGTATGAGAATTTTCAAAAC-TTTCTGTATCTTTTTAGGCTTC
65 TACTTCCATGGGTATCCGTGGAGGTATGAGAATTTTCAAAACTTTTC-ATATCTTTTCAGGCTTC
4272141 CATTAAAGTATGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
129 CATTAAAGTATGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
* * * *
4272187 ATAATAATAAATAAATTCTTTTTCATCTAATAAAAATTATCACCTAAATTTGTTGGAATTTTTAA
1 AAAATAATAAATAAATTCTTTTTCATCCAA-AAAAATTATCACCTAAATTTTTTGGAATTTCTAA
* * * * * * *
4272252 TA-TTCCTATGGGTATCCATGGAGGTGTGGGAATCTCCAAAACTTTTCGTATATTTT
65 TACTTCC-ATGGGTATCCGTGGAGGTATGAGAATTTTCAAAACTTTTCATATCTTTT
4272308 TGATTCTCCA
Statistics
Matches: 265, Mismatches: 26, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
174 37 0.14
175 222 0.84
176 6 0.02
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (174 bp):
AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTGGAATTTCTAAT
ACTTCCATGGGTATCCGTGGAGGTATGAGAATTTTCAAAACTTTTCATATCTTTTCAGGCTTCCA
TTAAAGTATGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
Found at i:4273244 original size:32 final size:30
Alignment explanation
Indices: 4273208--4273266 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
4273198 GAAATCAAAT
4273208 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
4273240 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
4273267 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:4273562 original size:13 final size:13
Alignment explanation
Indices: 4273544--4273569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4273534 CAATTTTTTG
4273544 TGTATCGATACAT
1 TGTATCGATACAT
4273557 TGTATCGATACAT
1 TGTATCGATACAT
4273570 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4273581 original size:32 final size:33
Alignment explanation
Indices: 4273524--4273587 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
4273514 TACAAGCCAA
**
4273524 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
4273557 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
4273588 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:4273664 original size:20 final size:21
Alignment explanation
Indices: 4273616--4273671 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
4273606 AAATCCCAAT
**
4273616 AACATGTATCGATACATCTTT
1 AACATGTATCGATACATCTGC
**
4273637 TTCATGTATCGATACAT-TGC
1 AACATGTATCGATACATCTGC
4273657 AACATGTATCGATAC
1 AACATGTATCGATAC
4273672 TTTGAATTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (21 bp):
AACATGTATCGATACATCTGC
Found at i:4274254 original size:154 final size:152
Alignment explanation
Indices: 4273963--4274886 Score: 975
Period size: 154 Copynumber: 6.0 Consensus size: 152
4273953 GATCCTAACA
* * * *
4273963 ATTTTCATAATTTT-TCAAAACTAACTCTTAGGTTATCACCGAG-TCTGTTTTTATGCCAAAGGT
1 ATTTTCATAATTTTCT-AAAACCAACTCCTAGGTCATCACCGAGTTC-GATTTTATGCCAAAGGT
* * *
4274026 GGGCATTTAGGATAGGTTTATCCTGTCTTAAACCTTTTTAAGTCCTTTAGGGGTATCAGGTACTT
64 GGGCATTTAGGATAGGTTCATCC-ATCTTAAACCTCTTTAAGTCCTTTAGGGGTATCAGGTACTT
* * * *
4274091 CAACGTCGAAGATATTCCCTAGAGGT
128 CTACGTCGAAGGTA-TCCCTAGGGGC
* * * * * *
4274117 GTTTTTATAATTTTTTAAAACCAACTCCTAGGTCGTCACCAAGTTCGATTTTATACCAAAGGTGG
1 ATTTTCATAATTTTCTAAAACCAACTCCTAGGTCATCACCGAGTTCGATTTTATGCCAAAGGTGG
4274182 GCATTTAGGATAGGTTCATCTCATCTTAAACCTCTTTAAGTCCTTTAGGGGTATC-GAGTACTTC
66 GCATTTAGGATAGGTTCATC-CATCTTAAACCTCTTTAAGTCCTTTAGGGGTATCAG-GTACTTC
**
4274246 TATATCGAAGGTATCCTCTAGGGGC
129 TACGTCGAAGGTATCC-CTAGGGGC
* * * * *
4274271 ATTTTTATAATTTTCTAGAACCAACTCCTAGGTCGTCACCGAGTTCGCTTTTATGCCAAAGGTAG
1 ATTTTCATAATTTTCTAAAACCAACTCCTAGGTCATCACCGAGTTCGATTTTATGCCAAAGGTGG
* *
4274336 GCATTTAGGATAGGTTCATCCTATCTTAAACCTCTTTAAGTCTTTTCGGGGTATCAGGTACTTCT
66 GCATTTAGGATAGGTTCATCC-ATCTTAAACCTCTTTAAGTCCTTTAGGGGTATCAGGTACTTCT
* *
4274401 ACATCGAAGGTATCCGCTTGGGGC
130 ACGTCGAAGGTATCC-CTAGGGGC
* * * * * * * *
4274425 ATTTTCGTAATTTTCTAAAATCAACTCCTACGTAATCAGCG-GGTCTACTTTTATGCTAAAGGTG
1 ATTTTCATAATTTTCTAAAACCAACTCCTAGGTCATCACCGAGTTCGA-TTTTATGCCAAAGGTG
* * * ** * *
4274489 GGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTGAGGGGTGTTGGGCACTTT
65 GGCATTTAGGATAGGTTCAT-CCATCTTAAACCTCTTTAAGTCCTTTAGGGGTATCAGGTACTTC
* *
4274554 TACGTCAAAGGTACCCCCTAGGGGC
129 TACGTCGAAGGTA-TCCCTAGGGGC
* * * *
4274579 ATTTTCATAATTTTCTAGAACCAACTCTTAGGTCGTCACCGGGTTC-ACTTTTATGCCAAAGGTG
1 ATTTTCATAATTTTCTAAAACCAACTCCTAGGTCATCACCGAGTTCGA-TTTTATGCCAAAGGTG
* * **
4274643 GGTATTTAGGATAGGTTCATCCCGTCTTAAACCTCTTTAAGTTTTTTAGGGGTA-CTAGGTACTT
65 GGCATTTAGGATAGGTTCAT-CCATCTTAAACCTCTTTAAGTCCTTTAGGGGTATC-AGGTACTT
*
4274707 CTACGTCGAAGGTATCCCCT-TGGGC
128 CTACGTCGAAGGTAT-CCCTAGGGGC
* * * * * * * *
4274732 ATTTT-ATTAATTTTCCAGAACCAACTCCTAGGTTATTACTGGGTTTGCTTTTATGCCAAAGGTG
1 ATTTTCA-TAATTTTCTAAAACCAACTCCTAGGTCATCACCGAGTTCGATTTTATGCCAAAGGTG
* * * * *
4274796 GGTATTTAGGATAGGTTCATCTTATCTTAAACCTTTTTTTACA-TCTTTTAGGGGTATCAGGTAT
65 GGCATTTAGGATAGGTTCATC-CATCTTAAACC--TCTTTA-AGTCCTTTAGGGGTATCAGGTAC
*
4274860 TTCTACGTCAAAGGTATCTCCTAGGGG
126 TTCTACGTCGAAGGTATC-CCTAGGGG
4274887 TAATTTTGGA
Statistics
Matches: 653, Mismatches: 95, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
152 2 0.00
153 94 0.14
154 499 0.76
155 53 0.08
156 5 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (152 bp):
ATTTTCATAATTTTCTAAAACCAACTCCTAGGTCATCACCGAGTTCGATTTTATGCCAAAGGTGG
GCATTTAGGATAGGTTCATCCATCTTAAACCTCTTTAAGTCCTTTAGGGGTATCAGGTACTTCTA
CGTCGAAGGTATCCCTAGGGGC
Found at i:4274530 original size:308 final size:307
Alignment explanation
Indices: 4273963--4274833 Score: 1079
Period size: 308 Copynumber: 2.8 Consensus size: 307
4273953 GATCCTAACA
* * ** *
4273963 ATTTTCATAATTTT-TCAAAACTAACTCTTAGGTTATCACCGAG-TCTGTTTTTATGCCAAAGGT
1 ATTTTCATAATTTTCT-AGAACCAACTCTTAGGTCGTCACCGAGTTC-GCTTTTATGCCAAAGGT
* * *
4274026 GGGCATTTAGGATAGGTTTATCCTGTCTTAAACCTTTTTAAGTCCTTTAGGGGTATCAGGTACTT
64 GGGCATTTAGGATAGGTTCATCCTGTCTTAAACCTCTTTAAGTCTTTTAGGGGTATCAGGTACTT
* * * * ** * * **
4274091 CAACGTCGAAGATATTCCCTAGAGGTGTTTTTATAATTTTTTAAAACCAACTCCTAGGTCGTCAC
129 CTACGTCGAAGGTA-TCCCTTGGGGCATTTTAATAATTTTCTAAAACCAACTCCTAGGTAATCA-
* * * * *
4274156 CAAGTTCGA-TTTTATACCAAAGGTGGGCATTTAGGATAGGTTCATCTCATCTTAAACCTCTTTA
192 CAGGGTCTACTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCTCATCTTAAACCTTTTTA
* * * * * *
4274220 AGTCCTTTAGGGGTATCGAGTACTTCTATATCGAAGGTATCCTCTAGGGGC
257 AGTCCTTGAGGGGTATCGAGCACTTCTACATCAAAGGTACCCCCTAGGGGC
* * *
4274271 ATTTTTATAATTTTCTAGAACCAACTCCTAGGTCGTCACCGAGTTCGCTTTTATGCCAAAGGTAG
1 ATTTTCATAATTTTCTAGAACCAACTCTTAGGTCGTCACCGAGTTCGCTTTTATGCCAAAGGTGG
* *
4274336 GCATTTAGGATAGGTTCATCCTATCTTAAACCTCTTTAAGTCTTTTCGGGGTATCAGGTACTTCT
66 GCATTTAGGATAGGTTCATCCTGTCTTAAACCTCTTTAAGTCTTTTAGGGGTATCAGGTACTTCT
* ** * *
4274401 ACATCGAAGGTATCCGCTTGGGGCATTTTCGTAATTTTCTAAAATCAACTCCTACGTAATCAGC-
131 ACGTCGAAGGTATCC-CTTGGGGCATTTTAATAATTTTCTAAAACCAACTCCTAGGTAATCA-CA
* *
4274465 GGGTCTACTTTTATGCTAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAG
194 GGGTCTACTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCTCATCTTAAACCTTTTTAAG
* * * * *
4274530 TCCTTGAGGGGTGTTGGGCACTTTTACGTCAAAGGTACCCCCTAGGGGC
259 TCCTTGAGGGGTATCGAGCACTTCTACATCAAAGGTACCCCCTAGGGGC
* *
4274579 ATTTTCATAATTTTCTAGAACCAACTCTTAGGTCGTCACCGGGTTCACTTTTATGCCAAAGGTGG
1 ATTTTCATAATTTTCTAGAACCAACTCTTAGGTCGTCACCGAGTTCGCTTTTATGCCAAAGGTGG
* * *
4274644 GTATTTAGGATAGGTTCATCCCGTCTTAAACCTCTTTAAGTTTTTTAGGGGTA-CTAGGTACTTC
66 GCATTTAGGATAGGTTCATCCTGTCTTAAACCTCTTTAAGTCTTTTAGGGGTATC-AGGTACTTC
* * * * * *
4274708 TACGTCGAAGGTATCCCCTT-GGGCATTTTATTAATTTTCCAGAACCAACTCCTAGGTTATTACT
130 TACGTCGAAGGTAT-CCCTTGGGGCATTTTAATAATTTTCTAAAACCAACTCCTAGGTAATCACA
* * * *
4274772 GGGTTTGCTTTTATGCCAAAGGTGGGTATTTAGGATAGGTTCATCTTATCTTAAACCTTTTT
194 GGGTCTACTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCTCATCTTAAACCTTTTT
4274834 TTACATCTTT
Statistics
Matches: 485, Mismatches: 71, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
306 1 0.00
307 98 0.20
308 381 0.79
309 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (307 bp):
ATTTTCATAATTTTCTAGAACCAACTCTTAGGTCGTCACCGAGTTCGCTTTTATGCCAAAGGTGG
GCATTTAGGATAGGTTCATCCTGTCTTAAACCTCTTTAAGTCTTTTAGGGGTATCAGGTACTTCT
ACGTCGAAGGTATCCCTTGGGGCATTTTAATAATTTTCTAAAACCAACTCCTAGGTAATCACAGG
GTCTACTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCTCATCTTAAACCTTTTTAAGTC
CTTGAGGGGTATCGAGCACTTCTACATCAAAGGTACCCCCTAGGGGC
Found at i:4278254 original size:20 final size:19
Alignment explanation
Indices: 4278207--4278259 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
4278197 ACCTTAAGTA
4278207 AAAAGTATCGATACATGGG
1 AAAAGTATCGATACATGGG
**
4278226 ACATTGTATCGATACATGGTG
1 A-AAAGTATCGATACATGG-G
4278247 AAAAGTATCGATA
1 AAAAGTATCGATA
4278260 TATTGTGCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 25 0.89
21 2 0.07
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (19 bp):
AAAAGTATCGATACATGGG
Found at i:4282044 original size:16 final size:16
Alignment explanation
Indices: 4282020--4282050 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4282010 AAATGCTTTC
*
4282020 AAAATTTTTAATAGAA
1 AAAAGTTTTAATAGAA
4282036 AAAAGTTTTAATAGA
1 AAAAGTTTTAATAGA
4282051 GGAAATGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAGTTTTAATAGAA
Found at i:4283394 original size:20 final size:21
Alignment explanation
Indices: 4283369--4283407 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
4283359 AATTTTCAGA
4283369 ATGTATCGATACAT-TGAATG
1 ATGTATCGATACATCTGAATG
*
4283389 ATGTATTGATACATCTGAA
1 ATGTATCGATACATCTGAA
4283408 AAAATCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (21 bp):
ATGTATCGATACATCTGAATG
Found at i:4283455 original size:13 final size:13
Alignment explanation
Indices: 4283437--4283475 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
4283427 ACAAGGATCT
4283437 TTGTATCGATACA
1 TTGTATCGATACA
4283450 TTGTATCGATACA
1 TTGTATCGATACA
* *
4283463 CTATATCGATACA
1 TTGTATCGATACA
4283476 AGGGTTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4286059 original size:19 final size:20
Alignment explanation
Indices: 4286035--4286085 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
4286025 CATCCAGATA
*
4286035 TATCGATACATGTTC-ATTG
1 TATCGATACATGCTCAATTG
*
4286054 TATCGATACATACTCAATTG
1 TATCGATACATGCTCAATTG
4286074 TATCGATACATG
1 TATCGATACATG
4286086 AAACTGGCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
TATCGATACATGCTCAATTG
Found at i:4286603 original size:23 final size:23
Alignment explanation
Indices: 4286577--4286620 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
4286567 GCATCCAACC
*
4286577 TTGGGTTATATATTCTT-AAGAAT
1 TTGGGATATA-ATTCTTGAAGAAT
4286600 TTGGGATATAATTCTTGAAGA
1 TTGGGATATAATTCTTGAAGA
4286621 GATTGAGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (23 bp):
TTGGGATATAATTCTTGAAGAAT
Found at i:4292142 original size:9 final size:8
Alignment explanation
Indices: 4292115--4292145 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
4292105 TTTTGAATGA
4292115 TTTTGAGT
1 TTTTGAGT
4292123 TTTTGAGT
1 TTTTGAGT
4292131 TTTTGAGAT
1 TTTTGAG-T
4292140 TTTTGA
1 TTTTGA
4292146 TGATTGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.68
9 7 0.32
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.61
Consensus pattern (8 bp):
TTTTGAGT
Found at i:4293943 original size:13 final size:13
Alignment explanation
Indices: 4293925--4293951 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4293915 ACATTATGCT
4293925 TTGTATCGATACA
1 TTGTATCGATACA
4293938 TTGTATCGATACA
1 TTGTATCGATACA
4293951 T
1 T
4293952 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4294034 original size:13 final size:13
Alignment explanation
Indices: 4294016--4294045 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
4294006 AATACACGGG
4294016 ACATTGTATCGAT
1 ACATTGTATCGAT
4294029 ACATTGTATCGAT
1 ACATTGTATCGAT
4294042 ACAT
1 ACAT
4294046 GGTGAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:4297300 original size:112 final size:112
Alignment explanation
Indices: 4297096--4297316 Score: 291
Period size: 112 Copynumber: 2.0 Consensus size: 112
4297086 GCTTGGAAAA
* * * *
4297096 ACATCAAATTTGTTTGATTTTTGAAGAAATTCATACTTTATACATTTTGATCCATTCATGCCTAG
1 ACATCAAATTTGTCTGATTTTTGAAGAAATTCATACTTTATACAATCTAATCCATTCATGCCTAG
*** * * *
4297161 GAAAATGAGGCATGTATCTTATGAGTTTTGAAATTTTTGAGCCCAATG
66 GAAAATGAGGCAAAAACCCTATCAGTTTTGAAATTTTT-AGCCCAATG
* * *
4297209 ACATTAAATTTGTCTGATTTTTG-AGAAATTCATGCTTTATACAATCTAATCCATTTATGCCTAG
1 ACATCAAATTTGTCTGATTTTTGAAGAAATTCATACTTTATACAATCTAATCCATTCATGCCTAG
* *
4297273 GAAAATGGGGTAAAAACCCTATCAGTTTTGAAATTTTTAGCCCA
66 GAAAATGAGGCAAAAACCCTATCAGTTTTGAAATTTTTAGCCCA
4297317 CCAAAATTTC
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
111 6 0.06
112 66 0.71
113 21 0.23
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (112 bp):
ACATCAAATTTGTCTGATTTTTGAAGAAATTCATACTTTATACAATCTAATCCATTCATGCCTAG
GAAAATGAGGCAAAAACCCTATCAGTTTTGAAATTTTTAGCCCAATG
Found at i:4297826 original size:89 final size:89
Alignment explanation
Indices: 4297645--4297828 Score: 212
Period size: 89 Copynumber: 2.1 Consensus size: 89
4297635 TGGCATTGGC
* *
4297645 ATTTGCATCATTCCATAAGCATTTGCCACTTTATTGAAACTTGCATTTGCATTATTTCACACACA
1 ATTTGCATCATTCCATAAGCATCTGCCACTTTATTGAAACTTGCATTTACATTATTTCACACACA
**
4297710 TATGCACCATTGGATGACATTGGT
66 TATGCACCATTGGATGACATTCAT
* * ** * **
4297734 ATTTGCATCA-TCTCATATGCATCTGCCATTTTATTGATGCTTGCATTTACATTGTTTCA-AGTG
1 ATTTGCATCATTC-CATAAGCATCTGCCACTTTATTGAAACTTGCATTTACATTATTTCACA-CA
*
4297797 CA-ACTGCACCATTTGATGACATTCAT
64 CATA-TGCACCATTGGATGACATTCAT
4297823 ATTTGC
1 ATTTGC
4297829 CTTGTTTGGA
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
88 4 0.05
89 76 0.95
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (89 bp):
ATTTGCATCATTCCATAAGCATCTGCCACTTTATTGAAACTTGCATTTACATTATTTCACACACA
TATGCACCATTGGATGACATTCAT
Found at i:4298401 original size:35 final size:35
Alignment explanation
Indices: 4298362--4298465 Score: 147
Period size: 35 Copynumber: 2.9 Consensus size: 35
4298352 TTCTCTCTTG
* *
4298362 TTTGACTGTATCTGGTCAAACTTTTCCCACCATCA
1 TTTGATTGTATTTGGTCAAACTTTTCCCACCATCA
*
4298397 TTTGATTGTATTTAGTCAAACTCTTT-CCACCATCA
1 TTTGATTGTATTTGGTCAAACT-TTTCCCACCATCA
*
4298432 TTTGATTGTATTTGGTCAAACACTTTCCCACCAT
1 TTTGATTGTATTTGGTCAAAC-TTTTCCCACCAT
4298466 TGTGCATCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
35 51 0.84
36 10 0.16
ACGTcount: A:0.24, C:0.25, G:0.11, T:0.40
Consensus pattern (35 bp):
TTTGATTGTATTTGGTCAAACTTTTCCCACCATCA
Found at i:4298502 original size:29 final size:30
Alignment explanation
Indices: 4298446--4298502 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
4298436 ATTGTATTTG
*
4298446 GTCAAACACTTTCCCACCATTGTGCATCTA
1 GTCAAACACTTTCCCACCATTGTCCATCTA
*
4298476 GTCAAACTCTTT-CCACCATCT-TCCATC
1 GTCAAACACTTTCCCACCAT-TGTCCATC
4298503 ATTGTTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.25, C:0.37, G:0.07, T:0.32
Consensus pattern (30 bp):
GTCAAACACTTTCCCACCATTGTCCATCTA
Found at i:4298550 original size:35 final size:35
Alignment explanation
Indices: 4298500--4298568 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
4298490 ACCATCTTCC
*
4298500 ATCATTGTTTAGTTGTATCTGGTCAAACTCTTTCA
1 ATCATGGTTTAGTTGTATCTGGTCAAACTCTTTCA
* *
4298535 ATCATGGTTTGGTTGTATGTGGTCAAACTCTTTC
1 ATCATGGTTTAGTTGTATCTGGTCAAACTCTTTC
4298569 CATCCTTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.19, T:0.45
Consensus pattern (35 bp):
ATCATGGTTTAGTTGTATCTGGTCAAACTCTTTCA
Found at i:4298630 original size:48 final size:48
Alignment explanation
Indices: 4298554--4298663 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
4298544 TGGTTGTATG
4298554 TGGTCAAACTCTTTCCATCCTTCATTTGACCGCATTAGTGTTAGGGCC
1 TGGTCAAACTCTTTCCATCCTTCATTTGACCGCATTAGTGTTAGGGCC
* * * * * * *
4298602 TGGTTAAACTTTTTTCATCCTTCGTTTGACTGCATTGGTGTTAGGACC
1 TGGTCAAACTCTTTCCATCCTTCATTTGACCGCATTAGTGTTAGGGCC
* *
4298650 TAGCCAAACTCTTT
1 TGGTCAAACTCTTT
4298664 TTATCTCGTT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (48 bp):
TGGTCAAACTCTTTCCATCCTTCATTTGACCGCATTAGTGTTAGGGCC
Found at i:4298711 original size:94 final size:93
Alignment explanation
Indices: 4298607--4298899 Score: 349
Period size: 94 Copynumber: 3.1 Consensus size: 93
4298597 GGGCCTGGTT
* * * * * *
4298607 AAACTTTTTTCATCCTTCGTTTGACTGCATTGGTGTTAGGACCTAGCCAAACTCTTTTTATCTCG
1 AAACTCTTTTCATCC-TCATTTGACTGTATTGGTGTTAGGACCTAGTCAAACTCTTTTCATCTAG
* * *
4298672 TTTCACTATATTGGCATCAGGACCTGGTC
65 TTTAACTATATTGGCATTAGGACCTGATC
*
4298701 AAACTCTTTTC-TACACTCATTTGACTGTATTGGTGTTAGGACCTAGTCAAACTCTTTTCATCTT
1 AAACTCTTTTCAT-C-CTCATTTGACTGTATTGGTGTTAGGACCTAGTCAAACTCTTTTCATCTA
* * *
4298765 GTTTGACTATATTAGCGTTAGGACCTGATC
64 GTTTAACTATATTGGCATTAGGACCTGATC
** *
4298795 AAACTCTTTTCAT-CTCATTTGACTGTATTGAAGTTA-GATCCTGGTCAAACTCTTTTCATCTAG
1 AAACTCTTTTCATCCTCATTTGACTGTATTGGTGTTAGGA-CCTAGTCAAACTCTTTTCATCTAG
* * *
4298858 TTTAACTGTTTTGGCATTAGGACATGATC
65 TTTAACTATATTGGCATTAGGACCTGATC
*
4298887 AAACTCTTCTCAT
1 AAACTCTTTTCAT
4298900 TTCATTCTGA
Statistics
Matches: 173, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
91 2 0.01
92 78 0.45
93 1 0.01
94 90 0.52
95 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (93 bp):
AAACTCTTTTCATCCTCATTTGACTGTATTGGTGTTAGGACCTAGTCAAACTCTTTTCATCTAGT
TTAACTATATTGGCATTAGGACCTGATC
Found at i:4298742 original size:48 final size:46
Alignment explanation
Indices: 4298554--4298914 Score: 296
Period size: 46 Copynumber: 7.7 Consensus size: 46
4298544 TGGTTGTATG
* * * * *
4298554 TGGTCAAACTCTTTCCATCCTTCATTTGACCGCATTAGTGTTAGGGCC
1 TGGTCAAACTCTTTTCAT-C-TCATTTGACTGTATTGGTGTTAGGACC
* * * *
4298602 TGGTTAAACTTTTTTCATCCTTCGTTTGACTGCATTGGTGTTAGGACC
1 TGGTCAAACTCTTTTCAT-C-TCATTTGACTGTATTGGTGTTAGGACC
* * * * * * ** *
4298650 TAGCCAAACTCTTTTTATCTCGTTTCACTATATTGGCATCAGGACC
1 TGGTCAAACTCTTTTCATCTCATTTGACTGTATTGGTGTTAGGACC
*
4298696 TGGTCAAACTCTTTTCTACACTCATTTGACTGTATTGGTGTTAGGACC
1 TGGTCAAACTCTTTTC-A-TCTCATTTGACTGTATTGGTGTTAGGACC
* ** * * *
4298744 TAGTCAAACTCTTTTCATCTTGTTTGACTATATTAGCGTTAGGACC
1 TGGTCAAACTCTTTTCATCTCATTTGACTGTATTGGTGTTAGGACC
* **
4298790 TGATCAAACTCTTTTCATCTCATTTGACTGTATTGAAGTTA-GATCC
1 TGGTCAAACTCTTTTCATCTCATTTGACTGTATTGGTGTTAGGA-CC
* * ** *
4298836 TGGTCAAACTCTTTTCATCT-AGTTTAACTGTTTTGGCATTAGGACA
1 TGGTCAAACTCTTTTCATCTCA-TTTGACTGTATTGGTGTTAGGACC
* * *
4298882 TGATCAAACTCTTCTCATTTCATTCTGAC-GTAT
1 TGGTCAAACTCTTTTCATCTCATT-TGACTGTAT
4298915 GGTTACCATT
Statistics
Matches: 251, Mismatches: 55, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
45 3 0.01
46 148 0.59
47 9 0.04
48 91 0.36
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (46 bp):
TGGTCAAACTCTTTTCATCTCATTTGACTGTATTGGTGTTAGGACC
Found at i:4298961 original size:44 final size:44
Alignment explanation
Indices: 4298885--4299506 Score: 378
Period size: 44 Copynumber: 14.1 Consensus size: 44
4298875 TAGGACATGA
* * * * ***
4298885 TCAAACTCTTCTCATT-TCATTCTGACGTATGGTTACCATTTTGG
1 TCAAATTCTTTTCATTCTGATT-TGATGTATGGTTACCACCCTGG
* * * * *
4298929 TCAGATTATTTTCATTCTGATTTGATGTATGGTTATCGCCCTAG
1 TCAAATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGG
* *** *
4298973 TCAAATCTTCCTTTC-TTCTG-TTTGGCATATGGTTACCACCTTGG
1 TCAAA--TTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGG
* * * * * *
4299017 TCAAACTCTTCTCATTTCAGGTCTG-TCGTATGGTTACCACCATGG
1 TCAAATTCTTTTCA-TTCTGATTTGAT-GTATGGTTACCACCCTGG
* *
4299062 TCAGATTCTTTTCATTTTGATTTGATGTATGGTTACCACCCTGG
1 TCAAATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGG
** * * * *
4299106 TCAAATT-TTCCTCTC-TTCT-ATTTGACATACGGTTACCAACTTAG
1 TCAAATTCTT--T-TCATTCTGATTTGATGTATGGTTACCACCCTGG
* * * * * * * * *
4299150 TGAAACTCTCTTCATTTCAGGTCTAACGTATGGTTACCATCCTGG
1 TCAAATTCTTTTCA-TTCTGATTTGATGTATGGTTACCACCCTGG
**
4299195 TCAAATTCTTTTCATTCTGATTTGATGTATGGTTACCACTTTGG
1 TCAAATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGG
* *
4299239 TCAAA-TCTACTTTCTTTTCTG-TTTGACGTATGGTTACCACCCTGG
1 TCAAATTCT--TTTC-ATTCTGATTTGATGTATGGTTACCACCCTGG
* * * * * *
4299284 TCAAACTCTTCTT-ATTTTGATCTGACGTACGGTTACCACCTTGG
1 TCAAATTCTT-TTCATTCTGATTTGATGTATGGTTACCACCCTGG
* *
4299328 TCAAATT-TTTTTATTTTGATTTGATGTATGGTTACCACCCTGG
1 TCAAATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGG
* * * *
4299371 TCAAA-CCTACTTCCTTTCT-ATTTGATGTATGGTTACCAACCTGG
1 TCAAATTCT--TTTCATTCTGATTTGATGTATGGTTACCACCCTGG
* * * * * *
4299415 TCAAACTCTTCTCATT-TCGGTGTGACGTAT-GTTACCACCCTAG
1 TCAAATTCTTTTCATTCT-GATTTGATGTATGGTTACCACCCTGG
* * *
4299458 TCAAA-TCTGTCTCCTTCCTG-TTTGACGTATGGTTACCACCCTGG
1 TCAAATTCT-TTTCATT-CTGATTTGATGTATGGTTACCACCCTGG
4299502 TCAAA
1 TCAAA
4299507 CAATTTGCAC
Statistics
Matches: 445, Mismatches: 101, Indels: 64
0.73 0.17 0.10
Matches are distributed among these distances:
42 13 0.03
43 80 0.18
44 223 0.50
45 113 0.25
46 16 0.04
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (44 bp):
TCAAATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGG
Found at i:4299064 original size:133 final size:134
Alignment explanation
Indices: 4298885--4299506 Score: 696
Period size: 133 Copynumber: 4.7 Consensus size: 134
4298875 TAGGACATGA
* ** * *
4298885 TCAAACTCTTCTCATTTCA-TTCTGACGTATGGTTACCATTTTGGTCAGATTATTTTCATTCTGA
1 TCAAACTCTTCTCATTTCAGGTCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGA
* * * * * *
4298949 TTTGATGTATGGTTATCGCCCTAGTCAAATCTTCCTTTC-TTCTGTTTGGCATATGGTTACCACC
66 TTTGATGTATGGTTACCACCCTGGTCAAATCTTACTTTCTTTCTATTTGACATATGGTTACCACC
4299013 TTGG
131 TTGG
* * * *
4299017 TCAAACTCTTCTCATTTCAGGTCTGTCGTATGGTTACCACCATGGTCAGATTCTTTTCATTTTGA
1 TCAAACTCTTCTCATTTCAGGTCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGA
* * * * *
4299082 TTTGATGTATGGTTACCACCCTGGTCAAATTTTCCTCTC-TTCTATTTGACATACGGTTACCAAC
66 TTTGATGTATGGTTACCACCCTGGTCAAATCTTACTTTCTTTCTATTTGACATATGGTTACCACC
*
4299146 TTAG
131 TTGG
* *
4299150 TGAAACTC-TCTTCATTTCAGGTCTAACGTATGGTTACCATCC-TGGTCAAATTCTTTTCATTCT
1 TCAAACTCTTC-TCATTTCAGGTCTGACGTATGGTTACCA-CCTTGGTCAAATTCTTTTCATTCT
** * *
4299213 GATTTGATGTATGGTTACCACTTTGGTCAAATC-TACTTTCTTTTCTGTTTGACGTATGGTTACC
64 GATTTGATGTATGGTTACCACCCTGGTCAAATCTTACTTTC-TTTCTATTTGACATATGGTTACC
*
4299277 ACCCTGG
128 ACCTTGG
* * * * * *
4299284 TCAAACTCTTCTTATTT-TGATCTGACGTACGGTTACCACCTTGGTCAAATT-TTTTTATTTTGA
1 TCAAACTCTTCTCATTTCAGGTCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGA
* * **
4299347 TTTGATGTATGGTTACCACCCTGGTCAAA-CCTACTTCCTTTCTATTTGATGTATGGTTACCAAC
66 TTTGATGTATGGTTACCACCCTGGTCAAATCTTACTTTCTTTCTATTTGACATATGGTTACC-AC
4299411 C-TGG
130 CTTGG
* * * * *
4299415 TCAAACTCTTCTCATTTC-GGTGTGACGTAT-GTTACCACCCTAGTCAAA-TCTGTCTCCTTCCT
1 TCAAACTCTTCTCATTTCAGGTCTGACGTATGGTTACCACCTTGGTCAAATTCT-TTTCATT-CT
*
4299477 G-TTTGACGTATGGTTACCACCCTGGTCAAA
64 GATTTGATGTATGGTTACCACCCTGGTCAAA
4299507 CAATTTGCAC
Statistics
Matches: 420, Mismatches: 57, Indels: 27
0.83 0.11 0.05
Matches are distributed among these distances:
129 1 0.00
130 17 0.04
131 82 0.20
132 76 0.18
133 205 0.49
134 37 0.09
135 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (134 bp):
TCAAACTCTTCTCATTTCAGGTCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGA
TTTGATGTATGGTTACCACCCTGGTCAAATCTTACTTTCTTTCTATTTGACATATGGTTACCACC
TTGG
Found at i:4299507 original size:87 final size:86
Alignment explanation
Indices: 4298885--4299507 Score: 416
Period size: 89 Copynumber: 7.1 Consensus size: 86
4298875 TAGGACATGA
* *** * * * *
4298885 TCAAACTCTTCTCATTTC-ATTCTGACGTATGGTTACCATTTTGGTCAGATTATTTTCATTCTGA
1 TCAAACTCTTCTCATTTCGGTT-TGACGTATGGTTACCACCCTGGTCA-AATCTTCTCCTTCTG-
* * * * *
4298949 TTTGATGTATGGTTATCGCCCTAG
63 TTTGACGTATGGTTACCACCTTGG
* * * * * *
4298973 TCAAA-TCTTC-CTTTCTTCTGTTTGGCATATGGTTACCACCTTGGTCAAACTCTTCTCATTTCA
1 TCAAACTCTTCTC-AT-TTCGGTTTGACGTATGGTTACCACCCTGGTCAAA-TCTTCTC-CTTC-
* * * *
4299036 GGTCTGTCGTATGGTTACCACCATGG
61 TGTTTGACGTATGGTTACCACCTTGG
* * * * * * * *
4299062 TCAGATTCTTTTCATTTTGATTTGATGTATGGTTACCACCCTGGTCAAATTTTCCTCTCTTCTAT
1 TCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAAATCTT-CTC-CTTCTGT
* * * *
4299127 TTGACATACGGTTACCAACTTAG
64 TTGACGTATGGTTACCACCTTGG
* * * * * *
4299150 TGAAACTC-TCTTCATTTCAGGTCTAACGTATGGTTACCATCCTGGTCAAATTCTTTTCATTCTG
1 TCAAACTCTTC-TCATTTC-GGTTTGACGTATGGTTACCACCCTGGTCAAA-TCTTCTCCTTCTG
* *
4299214 ATTTGATGTATGGTTACCACTTTGG
63 -TTTGACGTATGGTTACCACCTTGG
* * ** *
4299239 TCAAATCTACTT-TCTTTTCTGTTTGACGTATGGTTACCACCCTGGTCAAACTCTTCTTATTTTG
1 TCAAA-CT-CTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAAA-TCTTCTCCTTCTG
* *
4299303 ATCTGACGTACGGTTACCACCTTGG
63 -TTTGACGTATGGTTACCACCTTGG
* * * * * * * * *
4299328 TCAAA-TTTTTTTATTTTGATTTGATGTATGGTTACCACCCTGGTCAAACCTACTTCCTTTCTAT
1 TCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAAATCTTC-TCC-TTCTGT
*
4299392 TTGATGTATGGTTACCAACC-TGG
64 TTGACGTATGGTTACC-ACCTTGG
* *
4299415 TCAAACTCTTCTCATTTCGGTGTGACGTAT-GTTACCACCCTAGTCAAATCTGTCTCCTTCCTGT
1 TCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAAATCT-TCTCCTT-CTGT
*
4299479 TTGACGTATGGTTACCACCCTGG
64 TTGACGTATGGTTACCACCTTGG
4299502 TCAAAC
1 TCAAAC
4299508 AATTTGCACA
Statistics
Matches: 409, Mismatches: 102, Indels: 49
0.73 0.18 0.09
Matches are distributed among these distances:
86 11 0.03
87 113 0.28
88 93 0.23
89 172 0.42
90 17 0.04
91 2 0.00
92 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (86 bp):
TCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAAATCTTCTCCTTCTGTTT
GACGTATGGTTACCACCTTGG
Found at i:4300387 original size:175 final size:174
Alignment explanation
Indices: 4299961--4300432 Score: 651
Period size: 174 Copynumber: 2.7 Consensus size: 174
4299951 CAAAAATAAA
* *
4299961 AAAATAATAAATAAATTCTTTCTCATCCAAAAAAATTATCACCTAAACTTTTTGAAATTTCTAAT
1 AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTGAAATTTCTAAT
* * * * * * * *
4300026 ACTCTCATGGGTA-TCTATGGTGGTAAGGGAATTTTTAAAAGTTTTCGTATCTTTTCGGGCTTTC
66 ATTCTCATGGGTATTC-GTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGAGCTTCC
* *
4300090 ATTAATGTACGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
130 ATTAAGGTACAAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
* * **
4300135 -AAGTAATAAATAAATTTTTTTTCATCCAACAAAAATTATCACCTAAATTTTTCAAAATTTCTAA
1 AAAATAATAAATAAATTCTTTTTCATCCAA-AAAAATTATCACCTAAATTTTTTGAAATTTCTAA
* *
4300199 TATTCCCATGGGTATTCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTTGAGCTTCC
65 TATTCTCATGGGTATTCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGAGCTTCC
*
4300264 ATTAAGGTATAAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
130 ATTAAGGTACAAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
* * *
4300309 AAAATAATAAATAAATTCTTTTTCATCTAATAAAAATTATCATCTAAATTTTTTGGAATTTCTAA
1 AAAATAATAAATAAATTCTTTTTCATCCAA-AAAAATTATCACCTAAATTTTTTGAAATTTCTAA
* * * * * *
4300374 TATTCTCATGGGTATCCGTGGGGGTGTGAGAATCTCCAAAACTTTTCGTATATTTTCGA
65 TATTCTCATGGGTATTCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGA
4300433 TTCTCTATTA
Statistics
Matches: 260, Mismatches: 35, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
173 26 0.10
174 125 0.48
175 109 0.42
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (174 bp):
AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTGAAATTTCTAAT
ATTCTCATGGGTATTCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGAGCTTCCA
TTAAGGTACAAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
Found at i:4300456 original size:175 final size:173
Alignment explanation
Indices: 4299961--4300461 Score: 639
Period size: 175 Copynumber: 2.9 Consensus size: 173
4299951 CAAAAATAAA
* *
4299961 AAAATAATAAATAAATTCTTTCTCATCCAAAAAAATTATCACCTAAACTTTTTGAAATTTCTAAT
1 AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTGAAATTTCTAAT
* ** * * * * *
4300026 ACTCTCATGGGTATCTATGGTGGTAAGGGAATTTTTAAAAGTTTTCGTATCTTTTCGGGCTT-TC
66 ATTCTCATGGGTATCCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTC--GATTCTC
*
4300090 ATTAATGTACGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
129 ATTAAGGTACGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
* * **
4300135 -AAGTAATAAATAAATTTTTTTTCATCCAACAAAAATTATCACCTAAATTTTTCAAAATTTCTAA
1 AAAATAATAAATAAATTCTTTTTCATCCAA-AAAAATTATCACCTAAATTTTTTGAAATTTCTAA
* * *
4300199 TATTCCCATGGGTATTCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTTGAGCTTC-
65 TATTCTCATGGGTATCCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGA--TTCT
**
4300263 CATTAAGGTATAAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
128 CATTAAGGTACGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
* * *
4300309 AAAATAATAAATAAATTCTTTTTCATCTAATAAAAATTATCATCTAAATTTTTTGGAATTTCTAA
1 AAAATAATAAATAAATTCTTTTTCATCCAA-AAAAATTATCACCTAAATTTTTTGAAATTTCTAA
* * * * *
4300374 TATTCTCATGGGTATCCGTGGGGGTGTGAGAATCTCCAAAACTTTTCGTATATTTTCGATTCTCT
65 TATTCTCATGGGTATCCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGATTCTC-
* * *
4300439 ATTACGGTGCGAAATGAATTTTT
129 ATTAAGGTACGAAATGAAATTTT
4300462 TTATATATTA
Statistics
Matches: 279, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
172 1 0.00
173 29 0.10
174 124 0.44
175 125 0.45
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.38
Consensus pattern (173 bp):
AAAATAATAAATAAATTCTTTTTCATCCAAAAAAATTATCACCTAAATTTTTTGAAATTTCTAAT
ATTCTCATGGGTATCCGTGGGGGTATGGGAATTTTCAAAACTTTTCGTATCTTTTCGATTCTCAT
TAAGGTACGAAATGAAATTTTCAAAAATAAAAAGTAATAAAAT
Found at i:4301219 original size:154 final size:153
Alignment explanation
Indices: 4300970--4302006 Score: 1161
Period size: 154 Copynumber: 6.7 Consensus size: 153
4300960 CCAAAGGTGT
* * **
4300970 CAAAGGTGGGCATTTAGGATAGGTTCATCCCGTCTTGAACCTCGTTAAGTCCTTTAGGGGTATCG
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTATCG
* * * * * * * ** *
4301035 AGTACTTCTATGTTGAAAGTATCCCCTAGGGCCATTTTTGTAATTTTCCAAAACCAACTCAAAGC
66 AGTACTTCTACGTCGAAGGTATCCCTTAGGG-CATTTTTATAATTTTCTAGAACCAACTCCTAGG
* *
4301100 TCAACAACGAGTTCGCTTTTATGC
130 TCATCACCGAGTTCGCTTTTATGC
* *
4301124 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGATAACG
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTATCG
* * * * * * * * *
4301189 GGTACTTCTACATCAAAGATGTCCCTTAGGGGCATTTTCATAAATTTT-TAGAACCCACTTCTAA
66 AGTACTTCTACGTCGAAGGTATCCCTTA-GGGCATTTTTAT-AATTTTCTAGAACCAACTCCTAG
*
4301253 GTCATCACCGGGTTCGCTTTTATGC
129 GTCATCACCGAGTTCGCTTTTATGC
* * *
4301278 CAGAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTCTTTAAGTTCTTTAGGGGTATCG
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTATCG
* * *
4301343 AGTACTTCTACGTTGAAGGTATCCCCTAAGGGTATTTTTATAATTTTCTAGAACCAACTCCTAGG
66 AGTACTTCTACGTCGAAGGTAT-CCCTTAGGGCATTTTTATAATTTTCTAGAACCAACTCCTAGG
* * *
4301408 TCGTCACCGAGTTTGGTTTTATGC
130 TCATCACCGAGTTCGCTTTTATGC
* * * * * *
4301432 TAAAGGTGGGCATTTAGGATAGGTTCATCCCGTCATAAA-CTTATTCAAGTCCTTTAGGGGTGTT
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTT-TTTAAGTCCTTTAGGGGTATC
* * * * * *
4301496 GGGTACTTCTACGTCGAAGGTATCCCCTAGGGGTATTTTTGTAATTTTTTAGAACCAACTCCCAG
65 GAGTACTTCTACGTCGAAGGTATCCCTTA-GGGCATTTTTATAATTTTCTAGAACCAACTCCTAG
* * * * *
4301561 CTTATCACTG-GGTCTACTTTTATGC
129 GTCATCACCGAGTTC-GCTTTTATGC
* * * *
4301586 TAAAGATGGGCATTTATGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTGTCG
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTATCG
* * *
4301651 AGTACTTCTATGTCGAAGGTATCTCC-TAAGGCATTTTCATAATTTTCTAGAACCAACTCCTAGG
66 AGTACTTCTACGTCGAAGGTATC-CCTTAGGGCATTTTTATAATTTTCTAGAACCAACTCCTAGG
* * *
4301715 TCGTCACCGGGTCCGCTTTTATGC
130 TCATCACCGAGTTCGCTTTTATGC
* * **
4301739 TAAAGATGGGCATTTAGGATAGGTTCATCCTGTCTTAAACCTTTTTAAGTCCTTTAGGGGTAT-G
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTATCG
* * * * *
4301803 GGTACTTCTACGTTGAAGGTATCCCCTTAGGGCATTTTTGTAATTTTTTTAAAACCAACTCCTAG
66 AGTACTTCTACGTCGAAGGTAT-CCCTTAGGGCATTTTTATAA-TTTTCTAGAACCAACTCCTAG
** *
4301868 GTTGTCACCGAG-TCTGCATTTATGC
129 GTCATCACCGAGTTC-GCTTTTATGC
* * *
4301893 CAAAGGTGGGCATTTAGGATAGGTTCATCCCGTCTTAAACCTTTTTTATGTCCTTTGGGGGTATC
1 CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACC-TTTTTAAGTCCTTTAGGGGTATC
* **
4301958 AAGTACTTCTACGTCGAAGGTATCTCC-TAGAGGCATTTTCGTAATTTTC
65 GAGTACTTCTACGTCGAAGGTATC-CCTTAG-GGCATTTTTATAATTTTC
4302007 CTTCAAAATA
Statistics
Matches: 745, Mismatches: 120, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
152 22 0.03
153 132 0.18
154 510 0.68
155 47 0.06
156 34 0.05
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (153 bp):
CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGGTATCG
AGTACTTCTACGTCGAAGGTATCCCTTAGGGCATTTTTATAATTTTCTAGAACCAACTCCTAGGT
CATCACCGAGTTCGCTTTTATGC
Found at i:4301389 original size:308 final size:308
Alignment explanation
Indices: 4300713--4302006 Score: 1444
Period size: 308 Copynumber: 4.2 Consensus size: 308
4300703 TCTTTTCAGT
* *
4300713 GTATCG-GATACTTCTACGTCGAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTAGAACCAAC
1 GTATCGAG-TACTTCTACGTCGAAGGTATCCCCTAAGGGCATTTTTATAATTTTCTAGAACCAAC
* * * *
4300777 TCCTAGGTCATCACCGAG-TCTACTTTTATGCCAAAGGTGGGCGTTTAGGATAGGTTTAT-CTAT
65 TCCTAGGTCATCACCGAGTTC-GCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCAT
* * * * *
4300840 CTTAAACCTCTTTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTCAAAGGTATCCCCTAAGGTC
129 CTTAAACCTTTTTAAGTCCTTTAGGGGTAACGGGTACTTCTACGTCAAAGGTATCCCCTAGGGGC
* * * *
4300905 ATTTTCAT-AATTTTCCAAAACCAACTCCTAGGTCAAT-AACGAGTCCGCTTTTATGCCAAAGGT
194 ATTTTCATAAATTTT-TAAAACCAACTCCTAAGTC-ATCACCGAGTCTGCTTTTATG-C------
* * *
4300968 GTCAAAGGTGGGCATTTAGGATAGGTTCATCCCGTCTTGAACCTCGTTAAGTCCTTTAGGG
250 --CAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTCTTTAAGTCCTTTAGGG
* * * * * *
4301029 GTATCGAGTACTTCTATGTTGAAAGTATCCCCT-AGGGCCATTTTTGTAATTTTCCAAAACCAAC
1 GTATCGAGTACTTCTACGTCGAAGGTATCCCCTAAGGG-CATTTTTATAATTTTCTAGAACCAAC
** * * *
4301093 TCAAAGCTCAACAACGAGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATC
65 TCCTAGGTCATCACCGAGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATC
* * * * *
4301158 TTAAACCTTTTTAAGTCCTTTAGGGATAACGGGTACTTCTACATCAAAGATGTCCCTTAGGGGCA
130 TTAAACCTTTTTAAGTCCTTTAGGGGTAACGGGTACTTCTACGTCAAAGGTATCCCCTAGGGGCA
* * * * *
4301223 TTTTCATAAATTTTTAGAACCCACTTCTAAGTCATCACCGGGT-TCGCTTTTATGCCAGAGGTGG
195 TTTTCATAAATTTTTAAAACCAACTCCTAAGTCATCACCGAGTCT-GCTTTTATGCCAAAGGTGG
*
4301287 GCATTTAGGATAGGTTCATCCCATCTTAAACCTCTTTAAGTTCTTTAGGG
259 GCATTTAGGATAGGTTCATCCCATCTTAAACCTCTTTAAGTCCTTTAGGG
* *
4301337 GTATCGAGTACTTCTACGTTGAAGGTATCCCCTAAGGGTATTTTTATAATTTTCTAGAACCAACT
1 GTATCGAGTACTTCTACGTCGAAGGTATCCCCTAAGGGCATTTTTATAATTTTCTAGAACCAACT
* * * * * *
4301402 CCTAGGTCGTCACCGAGTTTGGTTTTATGCTAAAGGTGGGCATTTAGGATAGGTTCATCCCGTCA
66 CCTAGGTCATCACCGAGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATCT
* *** * *
4301467 TAAA-CTTATTCAAGTCCTTTAGGGGTGTTGGGTACTTCTACGTCGAAGGTATCCCCTAGGGGTA
131 TAAACCTT-TTTAAGTCCTTTAGGGGTAACGGGTACTTCTACGTCAAAGGTATCCCCTAGGGGCA
** * * * * * * * * *
4301531 TTTTTGTAATTTTTTAGAACCAACTCC-CAGCTTATCACTGGGTCTACTTTTATGCTAAAGATGG
195 TTTTCATAAATTTTTAAAACCAACTCCTAAG-TCATCACCGAGTCTGCTTTTATGCCAAAGGTGG
* *
4301595 GCATTTATGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGG
259 GCATTTAGGATAGGTTCATCCCATCTTAAACCTCTTTAAGTCCTTTAGGG
* * * *
4301645 GTGTCGAGTACTTCTATGTCGAAGGTATCTCCTAA-GGCATTTTCATAATTTTCTAGAACCAACT
1 GTATCGAGTACTTCTACGTCGAAGGTATCCCCTAAGGGCATTTTTATAATTTTCTAGAACCAACT
* * * * * **
4301709 CCTAGGTCGTCACCGGGTCCGCTTTTATGCTAAAGATGGGCATTTAGGATAGGTTCATCCTGTCT
66 CCTAGGTCATCACCGAGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATCT
* **
4301774 TAAACCTTTTTAAGTCCTTTAGGGGT-ATGGGTACTTCTACGTTGAAGGTATCCCCTTA-GGGCA
131 TAAACCTTTTTAAGTCCTTTAGGGGTAACGGGTACTTCTACGTCAAAGGTATCCCC-TAGGGGCA
** * * ** *
4301837 TTTTTGTAATTTTTTTAAAACCAACTCCTAGGTTGTCACCGAGTCTGCATTTATGCCAAAGGTGG
195 TTTTCATAA-ATTTTTAAAACCAACTCCTAAGTCATCACCGAGTCTGCTTTTATGCCAAAGGTGG
* * * *
4301902 GCATTTAGGATAGGTTCATCCCGTCTTAAACCTTTTTTATGTCCTTTGGGG
259 GCATTTAGGATAGGTTCATCCCATCTTAAACC-TCTTTAAGTCCTTTAGGG
* * **
4301953 GTATCAAGTACTTCTACGTCGAAGGTATCTCCT-AGAGGCATTTTCGTAATTTTC
1 GTATCGAGTACTTCTACGTCGAAGGTATCCCCTAAG-GGCATTTTTATAATTTTC
4302007 CTTCAAAATA
Statistics
Matches: 844, Mismatches: 116, Indels: 43
0.84 0.12 0.04
Matches are distributed among these distances:
306 40 0.05
307 187 0.22
308 386 0.46
309 22 0.03
315 4 0.00
316 102 0.12
317 97 0.11
318 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (308 bp):
GTATCGAGTACTTCTACGTCGAAGGTATCCCCTAAGGGCATTTTTATAATTTTCTAGAACCAACT
CCTAGGTCATCACCGAGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATCT
TAAACCTTTTTAAGTCCTTTAGGGGTAACGGGTACTTCTACGTCAAAGGTATCCCCTAGGGGCAT
TTTCATAAATTTTTAAAACCAACTCCTAAGTCATCACCGAGTCTGCTTTTATGCCAAAGGTGGGC
ATTTAGGATAGGTTCATCCCATCTTAAACCTCTTTAAGTCCTTTAGGG
Found at i:4301598 original size:462 final size:459
Alignment explanation
Indices: 4300721--4302007 Score: 1591
Period size: 462 Copynumber: 2.8 Consensus size: 459
4300711 GTGTATCGGA
** *
4300721 TACTTCTACGTCGAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTAGAACCAACTCCTAGGTC
1 TACTTCTACGTCGAAGGTAT-CCCT-AGGGCATTTTCATAAATTTTTAGAACCAACTCCTAGGTC
* * * *
4300786 ATCACCGAG-TCTACTTTTATGCCAAAGGTGGGCGTTTAGGATAGGTTTAT-CTATCTTAAACCT
64 ATCACCGGGTTC-GCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCTATCTTAAACCT
** *
4300849 CTTTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTCAAAGGTATCCCCTAA-GGTCATTTTCAT
128 CTTTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTTGAAGGTATCCCCTAAGGGT-ATTTTTAT
* * * *
4300913 AATTTTCCAAAACCAACTCCTAGGTCAAT-AACGAGTCCGCTTTTATGCCAAAGGTGTCAAAGGT
192 AATTTTCTAAAACCAACTCCTAGGTC-GTCACCGAGTCTGCTTTTATG-C-------T-AAAGGT
* **
4300977 GGGCATTTAGGATAGGTTCATCCCGTCTTGAACCTCGTTAAGTCCTTTAGGGGTATCGAGTACTT
247 GGGCATTTAGGATAGGTTCATCCCGTCTT-AAACTTATTAAGTCCTTTAGGGGTATCGAGTACTT
* * * *
4301042 CTATGTTGAAAGTATCCCCTAGGGCCATTTTTGTAATTTTCCAAAACCAACTCAAAGCTCAACAA
311 CTACGTCGAAGGTATCCCCTAGGGGCATTTTTGTAATTTTCCAAAACCAACTCAAAGCTCAACAA
* *
4301107 CGAGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAA
376 CGAGTTCACTTTTATGCCAAAGATGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAA
*
4301172 GTCCTTTAGGGATAACGGG
441 GTCCTTTAGGGATAACGAG
* * * * * * *
4301191 TACTTCTACATCAAAGATGTCCCTTAGGGGCATTTTCATAAATTTTTAGAACCCACTTCTAAGTC
1 TACTTCTACGTCGAAGGTATCCC-TA-GGGCATTTTCATAAATTTTTAGAACCAACTCCTAGGTC
* *
4301256 ATCACCGGGTTCGCTTTTATGCCAGAGGTGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTC
64 ATCACCGGGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCTATCTTAAACCTC
*
4301321 TTTAAGTTCTTTAGGGGTATCGAGTACTTCTACGTTGAAGGTATCCCCTAAGGGTATTTTTATAA
129 TTTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTTGAAGGTATCCCCTAAGGGTATTTTTATAA
* * *
4301386 TTTTCTAGAACCAACTCCTAGGTCGTCACCGAGTTTGGTTTTATGCTAAAGGTGGGCATTTAGGA
194 TTTTCTAAAACCAACTCCTAGGTCGTCACCGAGTCTGCTTTTATGCTAAAGGTGGGCATTTAGGA
* * * *
4301451 TAGGTTCATCCCGTCATAAACTTATTCAAGTCCTTTAGGGGTGTTGGGTACTTCTACGTCGAAGG
259 TAGGTTCATCCCGTCTTAAACTTATT-AAGTCCTTTAGGGGTATCGAGTACTTCTACGTCGAAGG
* ** * ** * * *
4301516 TATCCCCTAGGGGTATTTTTGTAATTTTTTAGAACCAACTCCCAGCTTATC-ACTG-GGTCTACT
323 TATCCCCTAGGGGCATTTTTGTAATTTTCCAAAACCAACTCAAAGCTCAACAAC-GAGTTC-ACT
* *
4301579 TTTATGCTAAAGATGGGCATTTATGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGG
386 TTTATGCCAAAGATGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGG
* **
4301644 GGTGTCGAG
451 GATAACGAG
* *
4301653 TACTTCTATGTCGAAGGTATCTCCTAAGGCATTTTCAT-AATTTTCTAGAACCAACTCCTAGGTC
1 TACTTCTACGTCGAAGGTATC-CCTAGGGCATTTTCATAAATTTT-TAGAACCAACTCCTAGGTC
* * * * * *
4301717 GTCACCGGGTCCGCTTTTATGCTAAAGATGGGCATTTAGGATAGGTTCATCCTGTCTTAAACCTT
64 ATCACCGGGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCTATCTTAAACCTC
* * * *
4301782 TTTAAGTCCTTTAGGGGTAT-GGGTACTTCTACGTTGAAGGTATCCCCTTAGGGCATTTTTGTAA
129 TTTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTTGAAGGTATCCCCTAAGGGTATTTTTATAA
* * * *
4301846 TTTTTTTAAAACCAACTCCTAGGTTGTCACCGAGTCTGCATTTATGCCAAAGGTGGGCATTTAGG
194 -TTTTCTAAAACCAACTCCTAGGTCGTCACCGAGTCTGCTTTTATGCTAAAGGTGGGCATTTAGG
* * * *
4301911 ATAGGTTCATCCCGTCTTAAACCTTTTTTATGTCCTTTGGGGGTATCAAGTACTTCTACGTCGAA
258 ATAGGTTCATCCCGTCTTAAA-C-TTATTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTCGAA
* * *
4301976 GGTATCTCCTAGAGGCATTTTCGTAATTTTCC
321 GGTATCCCCTAGGGGCATTTTTGTAATTTTCC
4302008 TTCAAAATAG
Statistics
Matches: 705, Mismatches: 98, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
460 46 0.07
461 191 0.27
462 253 0.36
463 7 0.01
469 4 0.01
470 93 0.13
471 108 0.15
472 3 0.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (459 bp):
TACTTCTACGTCGAAGGTATCCCTAGGGCATTTTCATAAATTTTTAGAACCAACTCCTAGGTCAT
CACCGGGTTCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCTATCTTAAACCTCTT
TAAGTCCTTTAGGGGTATCGAGTACTTCTACGTTGAAGGTATCCCCTAAGGGTATTTTTATAATT
TTCTAAAACCAACTCCTAGGTCGTCACCGAGTCTGCTTTTATGCTAAAGGTGGGCATTTAGGATA
GGTTCATCCCGTCTTAAACTTATTAAGTCCTTTAGGGGTATCGAGTACTTCTACGTCGAAGGTAT
CCCCTAGGGGCATTTTTGTAATTTTCCAAAACCAACTCAAAGCTCAACAACGAGTTCACTTTTAT
GCCAAAGATGGGCATTTAGGATAGGTTCATCCCATCTTAAACCTTTTTAAGTCCTTTAGGGATAA
CGAG
Found at i:4307146 original size:106 final size:108
Alignment explanation
Indices: 4307017--4307214 Score: 258
Period size: 106 Copynumber: 1.9 Consensus size: 108
4307007 TTCATCTTTG
* ** * * *
4307017 GGGATACTCCAACCCCACAATCTCCAAGGGGATACTCCAACCCCATTT-TTCTTTCAAAATGTCA
1 GGGATACTCCAAACCCACAATCTCCAAGCAGATACTCCAACCCCATTTCTACTTCCAAAACGTCA
4307081 AA-TTTTCATCT-TTAAGGATACTCCAATGCCACCATCTCCAAA
66 AACTTTTCATCTCTT-AGGATACTCCAATGCCACCATCTCCAAA
* * ***
4307123 GGGATACTTCAAACCCACAATCTCCGAGCAGATACTCCAACCTTGTTTCTACTTCCAAAACGTCA
1 GGGATACTCCAAACCCACAATCTCCAAGCAGATACTCCAACCCCATTTCTACTTCCAAAACGTCA
*
4307188 AACTTTTCATCTCTTGGGATACTCCAA
66 AACTTTTCATCTCTTAGGATACTCCAA
4307215 CCCCATTTTT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 40 0.52
107 15 0.19
108 20 0.26
109 2 0.03
ACGTcount: A:0.30, C:0.31, G:0.11, T:0.28
Consensus pattern (108 bp):
GGGATACTCCAAACCCACAATCTCCAAGCAGATACTCCAACCCCATTTCTACTTCCAAAACGTCA
AACTTTTCATCTCTTAGGATACTCCAATGCCACCATCTCCAAA
Found at i:4308396 original size:33 final size:33
Alignment explanation
Indices: 4308359--4308425 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
4308349 TTCAACGATT
4308359 TGTATCAATACATAAAATGTTGTATCGATACAA
1 TGTATCAATACATAAAATGTTGTATCGATACAA
* *** *
4308392 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCAATACATAAAATGTTGTATCGATACAA
4308425 T
1 T
4308426 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTATCAATACATAAAATGTTGTATCGATACAA
Found at i:4308397 original size:13 final size:13
Alignment explanation
Indices: 4308379--4308403 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4308369 CATAAAATGT
4308379 TGTATCGATACAA
1 TGTATCGATACAA
4308392 TGTATCGATACA
1 TGTATCGATACA
4308404 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4308487 original size:13 final size:13
Alignment explanation
Indices: 4308469--4308493 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4308459 ATTACTCACA
4308469 TGTATCGATACAT
1 TGTATCGATACAT
4308482 TGTATCGATACA
1 TGTATCGATACA
4308494 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4314722 original size:25 final size:26
Alignment explanation
Indices: 4314674--4314723 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
4314664 GTGAAAACCG
*
4314674 GGGTTAGAGTATCGCCTCGAAGATGGT
1 GGGTTAGAGTATC-CCTCAAAGATGGT
*
4314701 GGGTTGGAGTAT-CCTCAAAGATG
1 GGGTTAGAGTATCCCTCAAAGATG
4314724 AAGAATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.24, C:0.14, G:0.36, T:0.26
Consensus pattern (26 bp):
GGGTTAGAGTATCCCTCAAAGATGGT
Found at i:4315010 original size:79 final size:77
Alignment explanation
Indices: 4314758--4315052 Score: 274
Period size: 78 Copynumber: 3.8 Consensus size: 77
4314748 AATTAGTTTA
* ** ** *
4314758 AGTAT-CCAGAGATGAAAAATTCAATGTTTTGAAAGGAAAAATGGGGTTGGAGTATTCCCTCGAA
1 AGTATCCCAGAGATGAAAATTTTGACATTTTGAAAGTAAAAATGGGGTTGGAGTA-TCCCTC-AA
*
4314822 GATGGTGGGGTTGG
64 AATGGTGGGGTTGG
* * * ** *
4314836 AGTATCCTAGAGATGAAAATTTTGGCA-TTCGAAAGTAAAAGCGGGGTTGGATTATCCTCTCGAA
1 AGTATCCCAGAGATGAAAATTTTGACATTTTGAAAGTAAAAATGGGGTTGGAGTATCC-CTC-AA
* *
4314900 AATGGTAGAGTTGG
64 AATGGTGGGGTTGG
* *
4314914 AGTATCCCAGAGATGAAAATTTTGACATTTTGGAAGTAAAAATGGGGTTGAAGTATCCCTCAAAT
1 AGTATCCCAGAGATGAAAATTTTGACATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCTCAAA-
*
4314979 ATGGGGGGGTTGG
65 ATGGTGGGGTTGG
* * ** * *
4314992 AGTATCCCCAAAGATGAAAAATTT-AGTGTTTTAAAAGTGAAAATGAGGGTTGGAGTA-CCCT
1 AGTAT-CCCAGAGATGAAAATTTTGA-CATTTTGAAAGTAAAAATG-GGGTTGGAGTATCCCT
4315053 TTTTGATGTT
Statistics
Matches: 176, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
77 6 0.03
78 88 0.50
79 72 0.41
80 10 0.06
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (77 bp):
AGTATCCCAGAGATGAAAATTTTGACATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCTCAAAA
TGGTGGGGTTGG
Found at i:4317029 original size:31 final size:31
Alignment explanation
Indices: 4316994--4317054 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
4316984 TGCATGCAAG
4316994 GCAATATAGCATGCAATCATGGGGGACACAT
1 GCAATATAGCATGCAATCATGGGGGACACAT
*
4317025 GCAATGTAGCATGCAATCATGGGGGACACA
1 GCAATATAGCATGCAATCATGGGGGACACA
4317055 AGAAAATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.18
Consensus pattern (31 bp):
GCAATATAGCATGCAATCATGGGGGACACAT
Found at i:4317585 original size:18 final size:19
Alignment explanation
Indices: 4317541--4317602 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 19
4317531 AGAGGAAGCG
* *
4317541 AACGTGAAGGAGAGGACGGT
1 AACGTGAA-GAGAGCACGGC
*
4317561 AATGTGAAGA-AGCACGGC
1 AACGTGAAGAGAGCACGGC
4317579 AACGTGAA-AGAGCA--GC
1 AACGTGAAGAGAGCACGGC
4317595 AACGTGAA
1 AACGTGAA
4317603 AGCAGCCAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
16 10 0.27
17 1 0.03
18 17 0.46
19 2 0.05
20 7 0.19
ACGTcount: A:0.40, C:0.15, G:0.35, T:0.10
Consensus pattern (19 bp):
AACGTGAAGAGAGCACGGC
Found at i:4317810 original size:47 final size:47
Alignment explanation
Indices: 4317737--4317844 Score: 180
Period size: 47 Copynumber: 2.3 Consensus size: 47
4317727 CTCGAGCCTC
* *
4317737 CTCCAGCTTCCACGGCAGTAGTAGCTTCCACGAGCAACCGGTAGCAA
1 CTCCAGCTTCCACGGCAGTAGCAGCTTCCACGAGCAACCGGCAGCAA
* *
4317784 CTCCAGCTTCCATGGTAGTAGCAGCTTCCACGAGCAACCGGCAGCAA
1 CTCCAGCTTCCACGGCAGTAGCAGCTTCCACGAGCAACCGGCAGCAA
4317831 CTCCAGCTTCCACG
1 CTCCAGCTTCCACG
4317845 AGCAACCGGC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (47 bp):
CTCCAGCTTCCACGGCAGTAGCAGCTTCCACGAGCAACCGGCAGCAA
Found at i:4317847 original size:29 final size:29
Alignment explanation
Indices: 4317805--4317872 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
4317795 ATGGTAGTAG
4317805 CAGCTTCCACGAGCAACCGGCAGCAACTC
1 CAGCTTCCACGAGCAACCGGCAGCAACTC
4317834 CAGCTTCCACGAGCAACCGGCAGCAACTC
1 CAGCTTCCACGAGCAACCGGCAGCAACTC
4317863 CAGCTTCCAC
1 CAGCTTCCAC
4317873 AATAGCAGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.26, C:0.43, G:0.19, T:0.12
Consensus pattern (29 bp):
CAGCTTCCACGAGCAACCGGCAGCAACTC
Found at i:4317849 original size:76 final size:76
Alignment explanation
Indices: 4317759--4317911 Score: 243
Period size: 76 Copynumber: 2.0 Consensus size: 76
4317749 CGGCAGTAGT
* *** * *
4317759 AGCTTCCACGAGCAACCGGTAGCAACTCCAGCTTCCATGGTAGTAGCAGCTTCCACGAGCAACCG
1 AGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACAATAGCAGCAGCTTCCACGAGCAACCA
4317824 GCAGCAACTCC
66 GCAGCAACTCC
*
4317835 AGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACAATAGCAGCAGCTTCCACGAGCAACTA
1 AGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACAATAGCAGCAGCTTCCACGAGCAACCA
4317900 GCAGCAACTCC
66 GCAGCAACTCC
4317911 A
1 A
4317912 CGAGCACAGC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.29, C:0.37, G:0.20, T:0.14
Consensus pattern (76 bp):
AGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACAATAGCAGCAGCTTCCACGAGCAACCA
GCAGCAACTCC
Found at i:4317885 original size:47 final size:45
Alignment explanation
Indices: 4317834--4317993 Score: 189
Period size: 47 Copynumber: 3.5 Consensus size: 45
4317824 GCAGCAACTC
4317834 CAGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACAATAGCAG
1 CAGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCAC--TAGCAG
** ***
4317881 CAGCTTCCACGAGCAACTAGCAGCAACTCCA-CGAGCAC-AGCAG
1 CAGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACTAGCAG
* * *
4317924 TAGCTTCCACGAGCAACCGGCAACAACTCTAGCTTCCACTGTAGCAG
1 CAGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCAC--TAGCAG
*
4317971 CAGCTTCCACCAGCAACCGGCAG
1 CAGCTTCCACGAGCAACCGGCAG
4317994 TAATTCCACC
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
43 31 0.33
44 4 0.04
46 4 0.04
47 54 0.58
ACGTcount: A:0.29, C:0.38, G:0.20, T:0.13
Consensus pattern (45 bp):
CAGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACTAGCAG
Found at i:4317903 original size:23 final size:23
Alignment explanation
Indices: 4317875--4317940 Score: 93
Period size: 21 Copynumber: 3.0 Consensus size: 23
4317865 GCTTCCACAA
4317875 TAGCAGCAGCTTCCACGAGCAAC
1 TAGCAGCAGCTTCCACGAGCAAC
*
4317898 TAGCAGCAAC-TCCACGAGC-AC
1 TAGCAGCAGCTTCCACGAGCAAC
*
4317919 -AGCAGTAGCTTCCACGAGCAAC
1 TAGCAGCAGCTTCCACGAGCAAC
4317941 CGGCAACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 7 0.18
21 11 0.29
22 11 0.29
23 9 0.24
ACGTcount: A:0.32, C:0.35, G:0.21, T:0.12
Consensus pattern (23 bp):
TAGCAGCAGCTTCCACGAGCAAC
Found at i:4318002 original size:90 final size:89
Alignment explanation
Indices: 4317835--4318016 Score: 256
Period size: 90 Copynumber: 2.0 Consensus size: 89
4317825 CAGCAACTCC
* * *
4317835 AGCTTCCACGAGCAACCGGCAGCAACTCCAGCTTCCACAATAGCAGCAGCTTCCACGAGCAACTA
1 AGCTTCCACGAGCAACCGGCAACAACTCCAGCTTCCACAATAGCAGCAGCTTCCACCAGCAACCA
* *
4317900 GCAGCAACTCCACGAGCACAGCAGT
66 GCAGCAACTCCACCAGCA-ACCAGT
* ** *
4317925 AGCTTCCACGAGCAACCGGCAACAACTCTAGCTTCCACTGTAGCAGCAGCTTCCACCAGCAACCG
1 AGCTTCCACGAGCAACCGGCAACAACTCCAGCTTCCACAATAGCAGCAGCTTCCACCAGCAACCA
* *
4317990 GCAGTAATTCCACCAGCAACCAGT
66 GCAGCAACTCCACCAGCAACCAGT
4318014 AGC
1 AGC
4318017 AACTCCATGA
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 8 0.10
90 73 0.90
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.14
Consensus pattern (89 bp):
AGCTTCCACGAGCAACCGGCAACAACTCCAGCTTCCACAATAGCAGCAGCTTCCACCAGCAACCA
GCAGCAACTCCACCAGCAACCAGT
Found at i:4318023 original size:22 final size:22
Alignment explanation
Indices: 4317966--4318023 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
4317956 CTTCCACTGT
*
4317966 AGCAGCAGCTTCCACCAGCAACC
1 AGCAGCAAC-TCCACCAGCAACC
* * *
4317989 GGCAGTAATTCCACCAGCAACC
1 AGCAGCAACTCCACCAGCAACC
*
4318011 AGTAGCAACTCCA
1 AGCAGCAACTCCA
4318024 TGAGCACGAC
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.33, C:0.38, G:0.17, T:0.12
Consensus pattern (22 bp):
AGCAGCAACTCCACCAGCAACC
Found at i:4321907 original size:13 final size:13
Alignment explanation
Indices: 4321889--4321914 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4321879 TACACCAAGT
4321889 ATGTATCGATACA
1 ATGTATCGATACA
4321902 ATGTATCGATACA
1 ATGTATCGATACA
4321915 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4321912 original size:32 final size:33
Alignment explanation
Indices: 4321871--4321934 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
4321861 TAGCCAAACT
**
4321871 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
4321903 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
4321935 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:4324124 original size:84 final size:84
Alignment explanation
Indices: 4323964--4324124 Score: 186
Period size: 84 Copynumber: 1.9 Consensus size: 84
4323954 ACTCAAAGAA
* * * *
4323964 GAAAATAAATCAATAAGTGTAGAGAATCATATTCTTGAAAAGAAATTAAGTGAATTAGAGAAGAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAG
* *
4324029 TATGAAAGAGTTACAAAAT
66 AAAGAAAGAGTTACAAAAT
* *
4324048 GAAAATAAATCAATGAGTTTAGAAAAT-A-ATTCTTTTAAAAAGAAAATAAATGAATT--AGAAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTC--TTAAAAAGAAAATAAATGAATTAGAGAAG
4324109 AGAAAAGAAATGAGTT
64 AG-AAAGAAA-GAGTT
4324125 GCAAGTCGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
82 11 0.17
83 6 0.09
84 48 0.74
ACGTcount: A:0.53, C:0.04, G:0.17, T:0.25
Consensus pattern (84 bp):
GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAG
AAAGAAAGAGTTACAAAAT
Found at i:4326471 original size:30 final size:30
Alignment explanation
Indices: 4326435--4326494 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
4326425 GGGTGACAAC
* *
4326435 GTATTAAGGGGGAGAGTTTGTATAAATTTT
1 GTATTAAGGGGGAGAGCTTGCATAAATTTT
4326465 GTATTAAGGGGGAGAGCTTGCATAAATTTT
1 GTATTAAGGGGGAGAGCTTGCATAAATTTT
4326495 TGGTATTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.37
Consensus pattern (30 bp):
GTATTAAGGGGGAGAGCTTGCATAAATTTT
Found at i:4327621 original size:13 final size:13
Alignment explanation
Indices: 4327603--4327628 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4327593 TACACCAAGT
4327603 ATGTATCGATACA
1 ATGTATCGATACA
4327616 ATGTATCGATACA
1 ATGTATCGATACA
4327629 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4327626 original size:32 final size:33
Alignment explanation
Indices: 4327585--4327648 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
4327575 TAGCCAAACT
**
4327585 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
4327617 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
4327649 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:4329906 original size:22 final size:23
Alignment explanation
Indices: 4329862--4329906 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
4329852 ATTTTCATGG
*
4329862 CATTCATTCAACATTTTCATAAT
1 CATTCATTCAACATTTGCATAAT
* *
4329885 CATTCA-TCAATATTTGCTTAAT
1 CATTCATTCAACATTTGCATAAT
4329907 TAATAAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.44
Consensus pattern (23 bp):
CATTCATTCAACATTTGCATAAT
Found at i:4331606 original size:8 final size:8
Alignment explanation
Indices: 4331593--4331618 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
4331583 ACCAAGGGAA
4331593 AAGGTGTG
1 AAGGTGTG
4331601 AAGGTGTG
1 AAGGTGTG
4331609 AAGGTGTG
1 AAGGTGTG
4331617 AA
1 AA
4331619 AGAGCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (8 bp):
AAGGTGTG
Found at i:4334658 original size:30 final size:30
Alignment explanation
Indices: 4334622--4334681 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
4334612 GGGTGACAAC
* *
4334622 GTATTAAGGGGGAGAGTTTGTATAAATTTT
1 GTATTAAGGGGGAGAGCTTGCATAAATTTT
4334652 GTATTAAGGGGGAGAGCTTGCATAAATTTT
1 GTATTAAGGGGGAGAGCTTGCATAAATTTT
4334682 TGGTATTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.37
Consensus pattern (30 bp):
GTATTAAGGGGGAGAGCTTGCATAAATTTT
Found at i:4335808 original size:13 final size:13
Alignment explanation
Indices: 4335790--4335815 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4335780 TACACCAAGT
4335790 ATGTATCGATACA
1 ATGTATCGATACA
4335803 ATGTATCGATACA
1 ATGTATCGATACA
4335816 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4335813 original size:32 final size:33
Alignment explanation
Indices: 4335772--4335835 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
4335762 TAGCCAAACT
**
4335772 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
4335804 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
4335836 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Done.