Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold35
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4812169
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 17994 characters in sequence are not A, C, G, or T
File 9 of 30
Found at i:1329237 original size:48 final size:48
Alignment explanation
Indices: 1329185--1329281 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
1329175 CGAAATTATA
1329185 CCATTATTAAATGATCACTAAATTTTTCACTAATTTAGGTTTTTCAAT
1 CCATTATTAAATGATCACTAAATTTTTCACTAATTTAGGTTTTTCAAT
1329233 CCATTATTAAATGATCACTAAATTTTTCACTAATTTAGGTTTTTCAAT
1 CCATTATTAAATGATCACTAAATTTTTCACTAATTTAGGTTTTTCAAT
1329281 C
1 C
1329282 TTATTTCTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.45
Consensus pattern (48 bp):
CCATTATTAAATGATCACTAAATTTTTCACTAATTTAGGTTTTTCAAT
Found at i:1338900 original size:3 final size:3
Alignment explanation
Indices: 1338892--1338929 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
1338882 TTTGAGATTG
1338892 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1338930 TTGTTTCTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1347158 original size:32 final size:33
Alignment explanation
Indices: 1347117--1347179 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
1347107 CATTTCATGT
* *
1347117 TGTATCGATACAAAG-AACATTTATTGATACAA
1 TGTATCGATACAAAGCAACATGTATCGATACAA
*
1347149 TGTATCGATACTAAGCAACATGTATCGATAC
1 TGTATCGATACAAAGCAACATGTATCGATAC
1347180 TAAGCAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACATGTATCGATACAA
Found at i:1347173 original size:20 final size:20
Alignment explanation
Indices: 1347148--1347199 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
1347138 TATTGATACA
1347148 ATGTATCGATACTAAGCAAC
1 ATGTATCGATACTAAGCAAC
1347168 ATGTATCGATACTAAGCAAC
1 ATGTATCGATACTAAGCAAC
1347188 ATGTATCGATAC
1 ATGTATCGATAC
1347200 ATTTGGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (20 bp):
ATGTATCGATACTAAGCAAC
Found at i:1349963 original size:23 final size:22
Alignment explanation
Indices: 1349937--1349998 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 22
1349927 TAAAACATAT
1349937 TTAAACATCAAATTCATCAACA-A
1 TTAAACA-CAAA-TCATCAACACA
* *
1349960 TTAAGCACATATCATCAACACA
1 TTAAACACAAATCATCAACACA
1349982 TTCAAACA-AAA-CATCAA
1 TT-AAACACAAATCATCAA
1349999 AAGTGCAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 15 0.45
22 8 0.24
23 10 0.30
ACGTcount: A:0.52, C:0.24, G:0.02, T:0.23
Consensus pattern (22 bp):
TTAAACACAAATCATCAACACA
Found at i:1354439 original size:20 final size:20
Alignment explanation
Indices: 1354397--1354573 Score: 65
Period size: 20 Copynumber: 9.3 Consensus size: 20
1354387 TTTTACCCAG
* *
1354397 ATGTATCGATACAATT-TTCA
1 ATGTATTGATAC-ATTCTTGA
*
1354417 ATGTATTGATAC-TTGTATGA
1 ATGTATTGATACATTCT-TGA
* * *
1354437 ATGCATCGATACATTCTTTA
1 ATGTATTGATACATTCTTGA
1354457 ATGTATTGATACATT-TT--
1 ATGTATTGATACATTCTTGA
* * *
1354474 ATCT-TT-TTAC---CTAG-
1 ATGTATTGATACATTCTTGA
* * *
1354488 ATGTATCGATACATTTTTTA
1 ATGTATTGATACATTCTTGA
* *
1354508 ATGTATCGATACATGT-ATGA
1 ATGTATTGATACAT-TCTTGA
* *
1354528 ATGTATCGATACATGT-ATGA
1 ATGTATTGATACAT-TCTTGA
* *
1354548 ATGTATCGATACATTCTTCA
1 ATGTATTGATACATTCTTGA
1354568 ATGTAT
1 ATGTAT
1354574 CAATTCATTC
Statistics
Matches: 123, Mismatches: 21, Indels: 26
0.72 0.12 0.15
Matches are distributed among these distances:
13 1 0.01
14 3 0.02
15 4 0.03
16 5 0.04
17 3 0.02
18 2 0.02
19 5 0.04
20 96 0.78
21 4 0.03
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (20 bp):
ATGTATTGATACATTCTTGA
Found at i:1354525 original size:12 final size:12
Alignment explanation
Indices: 1354508--1354561 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
1354498 ACATTTTTTA
1354508 ATGTATCGATAC
1 ATGTATCGATAC
1354520 ATGTAT-G--A-
1 ATGTATCGATAC
1354528 ATGTATCGATAC
1 ATGTATCGATAC
1354540 ATGTAT-G--A-
1 ATGTATCGATAC
1354548 ATGTATCGATAC
1 ATGTATCGATAC
1354560 AT
1 AT
1354562 TCTTCAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 16
0.68 0.00 0.32
Matches are distributed among these distances:
8 12 0.35
9 4 0.12
11 4 0.12
12 14 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:1354551 original size:91 final size:91
Alignment explanation
Indices: 1354386--1354562 Score: 257
Period size: 91 Copynumber: 1.9 Consensus size: 91
1354376 AAAAATCACA
* *
1354386 TTTTTACCCAGATGTATCGATACAATTTTCAATGTATTGATACTTGTATGAATGCATCGATACAT
1 TTTTTACCCAGATGTATCGATACAATTTTCAATGTATCGATACATGTATGAATGCATCGATACAT
* * *
1354451 TCTTTAATGTATTGATACATTTTATC
66 TCATGAATGTATCGATACATTTTATC
* * * *
1354477 TTTTTACCTAGATGTATCGATACATTTTTTAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACAATTTTCAATGTATCGATACATGTATGAATGCATCGATACAT
1354542 GT-ATGAATGTATCGATACATT
66 -TCATGAATGTATCGATACATT
1354563 CTTCAATGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
91 75 0.99
92 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.43
Consensus pattern (91 bp):
TTTTTACCCAGATGTATCGATACAATTTTCAATGTATCGATACATGTATGAATGCATCGATACAT
TCATGAATGTATCGATACATTTTATC
Found at i:1354571 original size:40 final size:40
Alignment explanation
Indices: 1354488--1354574 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
1354478 TTTTACCTAG
* * * *
1354488 ATGTATCGATACATTTTTTAATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATGAATGTATCGATACATGTATCA
*
1354528 ATGTATCGATACATGTATGAATGTATCGATACAT-TCTTCA
1 ATGTATCGATACATGTATGAATGTATCGATACATGT-ATCA
1354568 ATGTATC
1 ATGTATC
1354575 AATTCATTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (40 bp):
ATGTATCGATACATGTATGAATGTATCGATACATGTATCA
Found at i:1354574 original size:20 final size:19
Alignment explanation
Indices: 1354488--1354574 Score: 102
Period size: 20 Copynumber: 4.4 Consensus size: 19
1354478 TTTTACCTAG
*
1354488 ATGTATCGATACATTTTTTA
1 ATGTATCGATACA-TTTTGA
*
1354508 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTGA
*
1354528 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTGA
*
1354548 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATT-TTGA
1354568 ATGTATC
1 ATGTATC
1354575 AATTCATTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
19 2 0.03
20 59 0.97
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (19 bp):
ATGTATCGATACATTTTGA
Found at i:1354582 original size:20 final size:20
Alignment explanation
Indices: 1354488--1354584 Score: 63
Period size: 20 Copynumber: 4.8 Consensus size: 20
1354478 TTTTACCTAG
* * *
1354488 ATGTATCGATACATTTTTTA
1 ATGTATCAATACATTCTTCA
* * *
1354508 ATGTATCGATACATGT-ATGA
1 ATGTATCAATACAT-TCTTCA
* * *
1354528 ATGTATCGATACATGT-ATGA
1 ATGTATCAATACAT-TCTTCA
*
1354548 ATGTATCGATACATTCTTCA
1 ATGTATCAATACATTCTTCA
*
1354568 ATGTATCAATTCATTCT
1 ATGTATCAATACATTCT
1354585 ATCTTTTTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 1 0.01
20 67 0.97
21 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCAATACATTCTTCA
Found at i:1354591 original size:111 final size:110
Alignment explanation
Indices: 1354397--1354632 Score: 328
Period size: 111 Copynumber: 2.1 Consensus size: 110
1354387 TTTTACCCAG
* * * *
1354397 ATGTATCGATACAATTTTCAATGTATTGATACTTGTATGAATGCATCGATACATTCTTTAATGTA
1 ATGTATCGATAC-ATTATCAATGTATCGATACATGTATGAATGCATCGATACATTCTTCAATGTA
** * * * *
1354462 TTGATACATTTTATCTTTTTACCTAGATGTATCGATACATTTTTTA
65 TCAATACATTCTATCTTTTTACCCAGATGTATCGATACATTATTCA
* *
1354508 ATGTATCGATACATGTATGAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTA
1 ATGTATCGATACAT-TATCAATGTATCGATACATGTATGAATGCATCGATACATTCTTCAATGTA
*
1354573 TCAATTCATTCTATCTTTTTACCCAGATGTATCGATACATTATTCA
65 TCAATACATTCTATCTTTTTACCCAGATGTATCGATACATTATTCA
*
1354619 ATGTATCAATACAT
1 ATGTATCGATACAT
1354633 CTAGTTAAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
110 2 0.02
111 108 0.98
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (110 bp):
ATGTATCGATACATTATCAATGTATCGATACATGTATGAATGCATCGATACATTCTTCAATGTAT
CAATACATTCTATCTTTTTACCCAGATGTATCGATACATTATTCA
Found at i:1357194 original size:14 final size:14
Alignment explanation
Indices: 1357175--1357204 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
1357165 TCACTTGTTG
1357175 TTCTACTAACATTT
1 TTCTACTAACATTT
1357189 TTCTACTAACATTT
1 TTCTACTAACATTT
1357203 TT
1 TT
1357205 GCAGAGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.53
Consensus pattern (14 bp):
TTCTACTAACATTT
Found at i:1364142 original size:25 final size:25
Alignment explanation
Indices: 1364108--1364157 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
1364098 ATATCAATCC
1364108 ATCTTATAACTGCCGATTAGGGAGG
1 ATCTTATAACTGCCGATTAGGGAGG
*
1364133 ATCTTATAACTGCCTATTAGGGAGG
1 ATCTTATAACTGCCGATTAGGGAGG
1364158 CCATGGATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (25 bp):
ATCTTATAACTGCCGATTAGGGAGG
Found at i:1369272 original size:14 final size:14
Alignment explanation
Indices: 1369255--1369281 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1369245 CAATTTCATA
1369255 TGTTTTTTTTCTTT
1 TGTTTTTTTTCTTT
1369269 TGTTTTTTTTCTT
1 TGTTTTTTTTCTT
1369282 CCTTTCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (14 bp):
TGTTTTTTTTCTTT
Found at i:1370459 original size:163 final size:164
Alignment explanation
Indices: 1370172--1370499 Score: 473
Period size: 163 Copynumber: 2.0 Consensus size: 164
1370162 CATCAACCAA
* * *
1370172 TCCTGATTTCAAATAAAGCACTCTTTCTTATTTGTTTATCTTTTCTTACCTTCTTTATTAGTGAA
1 TCCTAATTTCAAATAAAGCACTCTTCCTCATTTGTTTATCTTTTCTTACCTTCTTTATTAGTGAA
* * * * *
1370237 AGGGATCCTTGAGAAAGCTCTTTAGCTAATTTTGTAGAATTTTGGCATATGCCGATGTTATTTAT
66 AGGGATCCTCGAGAAAACTCTTTAGCCAATTCTGTAGAATTTTGGCATATGCCGATGTTATTTAC
* *
1370302 AGCCAAACATTCCAAGTTGAATTTCAATCTTATT
131 AGCCAAACATGCCAAGTGGAATTTCAATCTTATT
* *
1370336 TCCTAATTTC-AATAAAGCATTCTTCCTCATTTGTTTCTCTTTTCTTACCATT-TTTATTAGT-A
1 TCCTAATTTCAAATAAAGCACTCTTCCTCATTTGTTTATCTTTTCTTACC-TTCTTTATTAGTGA
* * *
1370398 AAGGGGATCCTCGAGAAAACTTTTTGGCCAATTCTGTAGAATTTTGGCATATGCTGATGTTATTT
65 AA-GGGATCCTCGAGAAAACTCTTTAGCCAATTCTGTAGAATTTTGGCATATGCCGATGTTATTT
*
1370463 CCAGCCAAACATGCCAAGTGGAATTTCAATCTTATT
129 ACAGCCAAACATGCCAAGTGGAATTTCAATCTTATT
1370499 T
1 T
1370500 TTCATTTTTC
Statistics
Matches: 146, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
162 3 0.02
163 132 0.90
164 11 0.08
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.42
Consensus pattern (164 bp):
TCCTAATTTCAAATAAAGCACTCTTCCTCATTTGTTTATCTTTTCTTACCTTCTTTATTAGTGAA
AGGGATCCTCGAGAAAACTCTTTAGCCAATTCTGTAGAATTTTGGCATATGCCGATGTTATTTAC
AGCCAAACATGCCAAGTGGAATTTCAATCTTATT
Found at i:1374282 original size:13 final size:13
Alignment explanation
Indices: 1374264--1374291 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1374254 ATACAAAGAT
1374264 CAATGTATCGATA
1 CAATGTATCGATA
1374277 CAATGTATCGATA
1 CAATGTATCGATA
1374290 CA
1 CA
1374292 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1374289 original size:33 final size:33
Alignment explanation
Indices: 1374247--1374471 Score: 105
Period size: 32 Copynumber: 7.0 Consensus size: 33
1374237 ATTTCTCAGT
1374247 TGTATCGATACAAAGA-TCAATGTATCGATACAA
1 TGTATCGATACAAAGAGT-AATGTATCGATACAA
**
1374280 TGTATCGATACATTGAGTAATGTATCGATAC-A
1 TGTATCGATACAAAGAGTAATGTATCGATACAA
** * * *
1374312 T-T-TCCTTGGC--AGTAGCT--TCGTAGCGATACAT
1 TGTATCGAT-ACAAAG-AG-TAAT-GTATCGATACAA
* * * *
1374343 TGTATCGATAC-AATACTTATGTATCGATACAT
1 TGTATCGATACAAAGAGTAATGTATCGATACAA
** * * *
1374375 TGTATCGATAC-ACCACTTATGTATCGATACAT
1 TGTATCGATACAAAGAGTAATGTATCGATACAA
** * * *
1374407 TGTATCGATAC-ACCACTTATGTATCGATACAT
1 TGTATCGATACAAAGAGTAATGTATCGATACAA
* * *
1374439 TGTATCGATAC-AACACTTATGTATCGATACAA
1 TGTATCGATACAAAGAGTAATGTATCGATACAA
1374471 T
1 T
1374472 TACTGTTTGT
Statistics
Matches: 163, Mismatches: 18, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
29 2 0.01
30 14 0.09
31 5 0.03
32 109 0.67
33 32 0.20
34 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAAAGAGTAATGTATCGATACAA
Found at i:1374353 original size:13 final size:13
Alignment explanation
Indices: 1374335--1374450 Score: 70
Period size: 13 Copynumber: 7.5 Consensus size: 13
1374325 AGCTTCGTAG
1374335 CGATACATTGTAT
1 CGATACATTGTAT
1374348 CGATACAATACTTATGTAT
1 CGATAC---A-TT--GTAT
1374367 CGATACATTGTAT
1 CGATACATTGTAT
1374380 CGATACACCACTTATGTAT
1 CGAT--A-CA--T-TGTAT
1374399 CGATACATTGTAT
1 CGATACATTGTAT
1374412 CGATACACCACTTATGTAT
1 CGAT--A-CA--T-TGTAT
1374431 CGATACATTGTAT
1 CGATACATTGTAT
1374444 CGATACA
1 CGATACA
1374451 ACACTTATGT
Statistics
Matches: 85, Mismatches: 0, Indels: 36
0.70 0.00 0.30
Matches are distributed among these distances:
13 35 0.41
14 2 0.02
15 4 0.05
16 10 0.12
17 4 0.05
18 2 0.02
19 28 0.33
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1374367 original size:19 final size:18
Alignment explanation
Indices: 1374343--1374492 Score: 105
Period size: 19 Copynumber: 8.8 Consensus size: 18
1374333 AGCGATACAT
1374343 TGTATCGATACAATACTTA
1 TGTATCGATACAA-ACTTA
1374362 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
1374375 TGTATCGATACACCACTTA
1 TGTATCGATACA-AACTTA
1374394 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
1374407 TGTATCGATACACCACTTA
1 TGTATCGATACA-AACTTA
1374426 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1374439 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
1374458 TGTATCGATACAATTACTGTT
1 TGTATCGATACAA--ACT-TA
1374479 TGTATCGATACAAA
1 TGTATCGATACAAA
1374493 TTGTTGAAAT
Statistics
Matches: 109, Mismatches: 2, Indels: 40
0.72 0.01 0.26
Matches are distributed among these distances:
13 33 0.30
14 3 0.03
16 6 0.06
18 3 0.03
19 47 0.43
20 3 0.03
21 14 0.13
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1374376 original size:32 final size:32
Alignment explanation
Indices: 1374335--1374469 Score: 243
Period size: 32 Copynumber: 4.2 Consensus size: 32
1374325 AGCTTCGTAG
*
1374335 CGATACATTGTATCGATACAATACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
1374367 CGATACATTGTATCGATACACCACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
1374399 CGATACATTGTATCGATACACCACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
1374431 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
1374463 CGATACA
1 CGATACA
1374470 ATTACTGTTT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 100 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:1379360 original size:21 final size:21
Alignment explanation
Indices: 1379327--1379371 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1379317 TTGCAAGTTG
*
1379327 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1379349 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1379369 AAA
1 AAA
1379372 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1381195 original size:15 final size:15
Alignment explanation
Indices: 1381175--1381205 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1381165 TAAAAATGTC
*
1381175 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1381190 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1381205 C
1 C
1381206 CCAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1383294 original size:13 final size:13
Alignment explanation
Indices: 1383276--1383301 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1383266 ACATTTTTCT
1383276 TTGTATCGATACA
1 TTGTATCGATACA
1383289 TTGTATCGATACA
1 TTGTATCGATACA
1383302 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1383465 original size:20 final size:20
Alignment explanation
Indices: 1383422--1383467 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1383412 AAATCTTTTG
1383422 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1383443 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1383463 CAAAA
1 CAAAA
1383468 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1385865 original size:13 final size:13
Alignment explanation
Indices: 1385847--1385872 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1385837 TACAGCAAGT
1385847 ATGTATCGATACA
1 ATGTATCGATACA
1385860 ATGTATCGATACA
1 ATGTATCGATACA
1385873 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1388203 original size:18 final size:18
Alignment explanation
Indices: 1388176--1388217 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1388166 CAACATGCTT
*
1388176 CATGGCTTTTAAAGGGCC
1 CATGGTTTTTAAAGGGCC
*
1388194 CATGGTTTTTAAAGGGGC
1 CATGGTTTTTAAAGGGCC
1388212 CATGGT
1 CATGGT
1388218 AATCTCTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (18 bp):
CATGGTTTTTAAAGGGCC
Found at i:1390440 original size:90 final size:91
Alignment explanation
Indices: 1390268--1390443 Score: 198
Period size: 90 Copynumber: 1.9 Consensus size: 91
1390258 CGAAGATGTA
* * *
1390268 AATATTTAAGAACAAAGAGAAATTTTAATTTTTTTATGAAGAAAGGGGCTGGAGTATCCCCTTGG
1 AATATTTAAGAACAAAGAGAAAGTTTAATTTTTTTATGAAGAAAGGGGCTGGAGTATCCCCTCGA
* * *
1390333 AGTAATGGGGTTAGAGTTTCCTCAAT
66 AGTAATCGAGATAGAGTTTCCTCAAT
* * *
1390359 AATATTTAAGAACAAAGCA-AAAGTTTGA-TTTTTTATGAAGGATA-GGGTTGGAGTATCCCCTC
1 AATATTTAAGAACAAAG-AGAAAGTTTAATTTTTTTATGAA-GAAAGGGGCTGGAGTATCCCCTC
* *
1390421 GAAAG-AGTCGAGATGGAGTTTCC
64 G-AAGTAATCGAGATAGAGTTTCC
1390444 CCCAAGGATA
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
90 41 0.58
91 29 0.41
92 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (91 bp):
AATATTTAAGAACAAAGAGAAAGTTTAATTTTTTTATGAAGAAAGGGGCTGGAGTATCCCCTCGA
AGTAATCGAGATAGAGTTTCCTCAAT
Found at i:1390488 original size:90 final size:89
Alignment explanation
Indices: 1390370--1390620 Score: 299
Period size: 89 Copynumber: 2.8 Consensus size: 89
1390360 ATATTTAAGA
* * * * *
1390370 ACAAAGCAAAAGTTTGATTTTTTATGAAGGAT-AGGGTTGGAGTATCCCCTCGAAAGAGTCGAGA
1 ACAAAGGAAAAGTTTAAGTTTTT-TGAA-GATCAGGGTTAGAGTATCCCCTCGAAAGAGTAGAGA
*
1390434 TGGAGTTTCCCCCAAGGATAAAATTAT
64 TGGAGTTT-CCCCAAAGATAAAATTAT
** * * * *
1390461 ATGAAGGAAAAGTTTAAGTTTTTTGAAGATCGGGGTTAGAGTATCCCCTCGAAATAATGGAGATG
1 ACAAAGGAAAAGTTTAAGTTTTTTGAAGATCAGGGTTAGAGTATCCCCTCGAAAGAGTAGAGATG
1390526 GAGTTTCCCCAAAGATAAAATTAT
66 GAGTTTCCCCAAAGATAAAATTAT
* ** * *
1390550 ACAAAGGAAAAATTTGAAG-TTTTTGAAGATCAAAGTTAGAGTATCCCCTCGAAGGAGTAGGGAT
1 ACAAAGGAAAAGTTT-AAGTTTTTTGAAGATCAGGGTTAGAGTATCCCCTCGAAAGAGTAGAGAT
1390614 GGAGTTT
65 GGAGTTT
1390621 TTCTAAAAGT
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
89 76 0.56
90 42 0.31
91 18 0.13
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (89 bp):
ACAAAGGAAAAGTTTAAGTTTTTTGAAGATCAGGGTTAGAGTATCCCCTCGAAAGAGTAGAGATG
GAGTTTCCCCAAAGATAAAATTAT
Found at i:1390697 original size:91 final size:90
Alignment explanation
Indices: 1390584--1390751 Score: 203
Period size: 91 Copynumber: 1.9 Consensus size: 90
1390574 GAAGATCAAA
* * * ** * *
1390584 GTTAGAGTATCCCCTCGAAGGAGTAGGGATGGAGTTT-TTCTAAAAGTTATACAAAGAAAAAGTT
1 GTTAAAGTATCACATCGAAGGAGTAGGGATAAAGTTTCCT-TAAAAATTATACAAAGAAAAAGTT
*
1390648 TGAGTGTTTTTTTTTTTGAAAATTGAG
65 TGAGT-TTTCTTTTTTTGAAAATTGAG
* * **
1390675 GTTAAAGTATCACATCGGAGGAGTGGGGATAAAGTTTCCTTAAAAATTATATGAAGAAAAAGTTT
1 GTTAAAGTATCACATCGAAGGAGTAGGGATAAAGTTTCCTTAAAAATTATACAAAGAAAAAGTTT
1390740 GAGTTTTCTTTT
66 GAGTTTTCTTTT
1390752 AAGATCAGGG
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
90 7 0.11
91 56 0.88
92 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (90 bp):
GTTAAAGTATCACATCGAAGGAGTAGGGATAAAGTTTCCTTAAAAATTATACAAAGAAAAAGTTT
GAGTTTTCTTTTTTTGAAAATTGAG
Found at i:1395151 original size:21 final size:21
Alignment explanation
Indices: 1395110--1395153 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1395100 CTCTCCTTTA
* *
1395110 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1395131 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1395152 TC
1 TC
1395154 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1396976 original size:13 final size:13
Alignment explanation
Indices: 1396958--1396983 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1396948 ATAATCACCC
1396958 TGTATCGATACAA
1 TGTATCGATACAA
1396971 TGTATCGATACAA
1 TGTATCGATACAA
1396984 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1398685 original size:13 final size:13
Alignment explanation
Indices: 1398667--1398695 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1398657 TAACCTCCTC
1398667 ATGTATCGATACA
1 ATGTATCGATACA
1398680 ATGTATCGATACA
1 ATGTATCGATACA
1398693 ATG
1 ATG
1398696 AAAAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1398704 original size:20 final size:20
Alignment explanation
Indices: 1398679--1398757 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
1398669 GTATCGATAC
1398679 AATGTATCGATACAATGAAA
1 AATGTATCGATACAATGAAA
*
1398699 AATGTATCGATACATTGAATTTCCA
1 AATGTATCGATACAATGAA-----A
*
1398724 GATGTATCGATACACA-GAAA
1 AATGTATCGATACA-ATGAAA
*
1398744 CATGTATCGATACA
1 AATGTATCGATACA
1398758 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 17 0.35
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACAATGAAA
Found at i:1402635 original size:21 final size:21
Alignment explanation
Indices: 1402606--1402650 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1402596 AAGTTTTCAT
*
1402606 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1402626 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1402648 TTT
1 TTT
1402651 CAACTTGCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1406839 original size:387 final size:386
Alignment explanation
Indices: 1406120--1406891 Score: 1440
Period size: 387 Copynumber: 2.0 Consensus size: 386
1406110 TACCTTTTGA
*
1406120 TTTCTTTCATTCAAAGGCCAAATGATCACTTGATCAATTTTTCATCATTTGAAAGTTGCTAGAAA
1 TTTCCTTCATTCAAAGGCCAAATGATCACTTGATCAATTTTTCATCATTTGAAAGTTGCTAGAAA
1406185 AATTCAACGTGATTAAGAATATGCTTAAAAGGTTTTAACATTTATTTTGGCCTTTTCTAGTAAAA
66 AATTCAACGTGATTAAGAATATGCTTAAAAGGTTTTAACATTTATTTTGGCCTTTTCTAGTAAAA
1406250 ATAAATTTAAAGGTTTTGAAATTCCAAAAATAGCTTGAATAAATTAAGCTTCTATCATGTTGGGT
131 ATAAATTTAAAGGTTTTGAAATTCCAAAAATAGCTTGAATAAATTAAGCTTCTATCATGTTGGGT
1406315 ATAAATAAGCTTATTAGTGTGAGTTTGATACCATAACATGTTTTAGCAATCTTTATGCCTCTTGA
196 ATAAATAAGCTTATTAGTGTGAGTTTGATACCATAACATGTTTTAGCAATCTTTATGCCTCTTGA
* *
1406380 ATGCTATATGCTTATTCTACTTATATGAGGCTTAAAATGGTTGGATATGTAATTTGTTAATATAA
261 ATACTATATGCTTATTCTACTTATATGAGGCTTAAAATGGTTGGATATGCAATTTGTTAATATAA
*
1406445 ACATATTTTTATGGGTTGTACAAGTTTATTGAACATTAAAAATGTCAATGAACTAATGCATT
326 ACATATTTTTAT-GGTTATACAAGTTTATTGAACATTAAAAATGTCAATGAACTAATGCATT
1406507 TTTCCTTCATTCAAAGGCCAAATGATCACTTGATCAATTTTTCATCATTTGAAAGTTGCTAGAAA
1 TTTCCTTCATTCAAAGGCCAAATGATCACTTGATCAATTTTTCATCATTTGAAAGTTGCTAGAAA
*
1406572 AATTCAATGTGATTAAGAATATGCTTAAAAGGTTTTAACATTTATTTTGGCCTTTTCTAGTAAAA
66 AATTCAACGTGATTAAGAATATGCTTAAAAGGTTTTAACATTTATTTTGGCCTTTTCTAGTAAAA
*
1406637 ATAAATTT-AAGGTTTTGAAATTCCAAAAATAGCTTGAATAAATTAAGCTTCTGTCATGTTGGGT
131 ATAAATTTAAAGGTTTTGAAATTCCAAAAATAGCTTGAATAAATTAAGCTTCTATCATGTTGGGT
1406701 ATAAATAAGCTTACTT-GTGTGAGTTTGATACCATAAACATGTTTTAGCAATCTTTATGCCTCTT
196 ATAAATAAGCTTA-TTAGTGTGAGTTTGATACCAT-AACATGTTTTAGCAATCTTTATGCCTCTT
1406765 GAATACTATATGCTTATTCTACTTATATGAGGCTTAAAATGGTTGGATATGCAATTTGTTAATAT
259 GAATACTATATGCTTATTCTACTTATATGAGGCTTAAAATGGTTGGATATGCAATTTGTTAATAT
*
1406830 AAACATATTTTTATGGTTATACAAGTTTATTGAACATTAAAAATGTCTATGAACTAATGCAT
324 AAACATATTTTTATGGTTATACAAGTTTATTGAACATTAAAAATGTCAATGAACTAATGCAT
1406892 ATTTGTTTTG
Statistics
Matches: 376, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
386 132 0.35
387 244 0.65
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (386 bp):
TTTCCTTCATTCAAAGGCCAAATGATCACTTGATCAATTTTTCATCATTTGAAAGTTGCTAGAAA
AATTCAACGTGATTAAGAATATGCTTAAAAGGTTTTAACATTTATTTTGGCCTTTTCTAGTAAAA
ATAAATTTAAAGGTTTTGAAATTCCAAAAATAGCTTGAATAAATTAAGCTTCTATCATGTTGGGT
ATAAATAAGCTTATTAGTGTGAGTTTGATACCATAACATGTTTTAGCAATCTTTATGCCTCTTGA
ATACTATATGCTTATTCTACTTATATGAGGCTTAAAATGGTTGGATATGCAATTTGTTAATATAA
ACATATTTTTATGGTTATACAAGTTTATTGAACATTAAAAATGTCAATGAACTAATGCATT
Found at i:1419204 original size:10 final size:11
Alignment explanation
Indices: 1419185--1419216 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
1419175 TAAAAAAGCC
1419185 TTTTCTTTTTT
1 TTTTCTTTTTT
1419196 TTTTCTTTTTT
1 TTTTCTTTTTT
1419207 TTTTCCTTTT
1 TTTT-CTTTT
1419217 CTCTTTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:1419215 original size:28 final size:28
Alignment explanation
Indices: 1419183--1419254 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
1419173 CTTAAAAAAG
* * *
1419183 CCTTTTCTTTTTTTTTTCTTTTTTTTTT
1 CCTTTTCTTTTTTTCTCCTTTTCTTTTT
*
1419211 CCTTTTCTCTTTTATCTCCTTTTCTTTTT
1 CCTTTTCT-TTTTTTCTCCTTTTCTTTTT
1419240 -CTTTCTCTTTTTTTC
1 CCTTT-TCTTTTTTTC
1419255 GGTTTTCTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.76
Consensus pattern (28 bp):
CCTTTTCTTTTTTTCTCCTTTTCTTTTT
Found at i:1419216 original size:17 final size:17
Alignment explanation
Indices: 1419184--1419239 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
1419174 TTAAAAAAGC
1419184 CTTTTCTTTTTT--TTTT
1 CTTTT-TTTTTTCCTTTT
1419200 CTTTTTTTTTTCCTTTT
1 CTTTTTTTTTTCCTTTT
* * *
1419217 CTCTTTTATCTCCTTTT
1 CTTTTTTTTTTCCTTTT
1419234 CTTTTT
1 CTTTTT
1419240 CTTTCTCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 6 0.18
16 5 0.15
17 23 0.68
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTTTTTTCCTTTT
Found at i:1419249 original size:17 final size:17
Alignment explanation
Indices: 1419196--1419250 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
1419186 TTTCTTTTTT
*
1419196 TTTTCTTTTTTTTTTCC
1 TTTTCTTTTTTTTCTCC
* *
1419213 TTTTCTCTTTTATCTCC
1 TTTTCTTTTTTTTCTCC
1419230 TTTTCTTTTTCTTTCT-C
1 TTTTCTTTTT-TTTCTCC
1419247 TTTT
1 TTTT
1419251 TTTCGGTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 28 0.88
18 4 0.12
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTTTTTCTCC
Found at i:1421006 original size:52 final size:52
Alignment explanation
Indices: 1420944--1421044 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
1420934 GTATGAGAAT
*
1420944 ATTAGGTCTTTAATATTTTTTAAAAATCAAATTATCTTCCATACCCCACCAA
1 ATTAGATCTTTAATATTTTTTAAAAATCAAATTATCTTCCATACCCCACCAA
*
1420996 ATTAGATCTTTAATATTTTTTGAAAATCAAATTATCTTCCATACCCCAC
1 ATTAGATCTTTAATATTTTTTAAAAATCAAATTATCTTCCATACCCCAC
1421045 GAGAGAGCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.40
Consensus pattern (52 bp):
ATTAGATCTTTAATATTTTTTAAAAATCAAATTATCTTCCATACCCCACCAA
Found at i:1421913 original size:156 final size:155
Alignment explanation
Indices: 1421491--1422025 Score: 519
Period size: 156 Copynumber: 3.4 Consensus size: 155
1421481 TTTTAATACC
* * * * *
1421491 AAATTACCAAAATGCCCTTAGGATATATTTTCGACATAAAAATAT-TCGAGTAACCTTAAAGGA-
1 AAATTACCAAAATGCCC-TAGGGTATACTTTAGACATAAAAATATCTCG-GTAACCCTAAAAGAC
* * * * * * *
1421554 TGTGATAATAATCTAAAATAATGAGTTTATCCCTAATGTGTACTTTCAACATAAAAGTATCCAGG
64 T-TGAAAATAGTCTAAAATAATGAATCTATCCCTAATGTGTACCTTCAACATAAAACTATTCAGG
* * * ***
1421619 CAATCACATAGGACTTGATTCTAATATG
128 TAATCACATAGGGCTTGGTTCTAATGCA
* * * * * *
1421647 AAATTACCAAAATGCCCTTGGGATATACTTTAAACATTTAAAAATAGCTTGGTAACTCTTAAAGA
1 AAATTACCAAAATGCCCTAGGG-TATACTTTAGACA--TAAAAATATCTCGGTAACCCTAAAAGA
** * * *
1421712 CTCAAAAATAGTCTAAAATAGTGAACCTATCCCTGATGTGTACCTTCGAA-ATAAAACTATTCAG
63 CTTGAAAATAGTCTAAAATAATGAATCTATCCCTAATGTGTACCTTC-AACATAAAACTATTCAG
*
1421776 GTAATTACATAGGGCTTGGTTCTAATGCA
127 GTAATCACATAGGGCTTGGTTCTAATGCA
** *
1421805 AAATTACCAAAATGCCCCTAGGGTATACCTTT-GATGTAAAAGTATCTCGGTAACCCTAAAAGAC
1 AAATTACCAAAATG-CCCTAGGGTATA-CTTTAGACATAAAAATATCTCGGTAACCCTAAAAGAC
* * *
1421869 TTGAAAATAGTCTAAAATAATGAATCTATCCCTAATATGCACCTTCAACAT-GAACGTA-TCTAG
64 TTGAAAATAGTCTAAAATAATGAATCTATCCCTAATGTGTACCTTCAACATAAAAC-TATTC-AG
1421932 GTAATCACAT-GGGACTTGGTTCTAATGCA
127 GTAATCACATAGGG-CTTGGTTCTAATGCA
* * * * *
1421961 AAATTACCAAAATGCCCTCAAGGTATACCTTT-GACATGAAAGTATCTCGATAACTCTAAAAGAC
1 AAATTACCAAAATGCCCT-AGGGTATA-CTTTAGACATAAAAATATCTCGGTAACCCTAAAAGAC
1422025 T
64 T
1422026 AAAAAATGAT
Statistics
Matches: 312, Mismatches: 54, Indels: 26
0.80 0.14 0.07
Matches are distributed among these distances:
155 17 0.05
156 173 0.55
158 106 0.34
159 16 0.05
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (155 bp):
AAATTACCAAAATGCCCTAGGGTATACTTTAGACATAAAAATATCTCGGTAACCCTAAAAGACTT
GAAAATAGTCTAAAATAATGAATCTATCCCTAATGTGTACCTTCAACATAAAACTATTCAGGTAA
TCACATAGGGCTTGGTTCTAATGCA
Found at i:1422104 original size:156 final size:157
Alignment explanation
Indices: 1421491--1422133 Score: 403
Period size: 156 Copynumber: 4.1 Consensus size: 157
1421481 TTTTAATACC
* * * *
1421491 AAATTACCAAAATGCCCT-T-AGGATATA-TTTTCGACATAAAAATAT-TCGAGTAACCTTAAAG
1 AAATTACCAAAATGCCCTCTAAGG-TATACCTTT-GACATAAAAGTATCTCGA-TAACCCTAAAA
** * * *** * * * * *
1421552 GA-TGTGATAATAATCTAAAATAATGAGTTTATCCCTAATGTGTACTTTCAACATAAAAGTATCC
63 GACT-AAAAAATAGTCTAAAATAATGAACCTATCCCTAATATGCACATTCAACATAAAAGCATCT
* * ***
1421616 AGGCAATCACAT-AGGACTTGATTCTAATATG
127 AGGGAATCACATGA-GACTTGGTTCTAATGCA
* * * * * * * *
1421647 AAATTACCAAAATGCCCT-T-GGGATATA-CTTTAAACATTTAAAAATAGCTTGGTAACTCTTAA
1 AAATTACCAAAATGCCCTCTAAGG-TATACCTTT-GACA--TAAAAGTATCTCGATAACCCTAAA
* * * * * *
1421709 AGACTCAAAAATAGTCTAAAATAGTGAACCTATCCCTGATGTGTACCTTCGAA-ATAAAA-CTAT
62 AGACTAAAAAATAGTCTAAAATAATGAACCTATCCCTAATATGCACATTC-AACATAAAAGC-AT
* * *
1421772 -TCAGGTAATTACAT-AGGGCTTGGTTCTAATGCA
125 CT-AGGGAATCACATGA-GACTTGGTTCTAATGCA
* ** *
1421805 AAATTACCAAAATGCCC-CTAGGGTATACCTTTGATGTAAAAGTATCTCGGTAACCCTAAAAGAC
1 AAATTACCAAAATGCCCTCTAAGGTATACCTTTGACATAAAAGTATCTCGATAACCCTAAAAGAC
** * * * * * *
1421869 TTGAAAATAGTCTAAAATAATGAATCTATCCCTAATATGCACCTTCAACATGAACGTATCTAGGT
66 TAAAAAATAGTCTAAAATAATGAACCTATCCCTAATATGCACATTCAACATAAAAGCATCTAGGG
*
1421934 AATCACATGGGACTTGGTTCTAATGCA
131 AATCACATGAGACTTGGTTCTAATGCA
* *
1421961 AAATTACCAAAATGCCCTC-AAGGTATACCTTTGACATGAAAGTATCTCGATAACTCTAAAAGAC
1 AAATTACCAAAATGCCCTCTAAGGTATACCTTTGACATAAAAGTATCTCGATAACCCTAAAAGAC
* ***
1422025 TAAAAAAT-GATCATAAAA-AGGTGAACCTAT-CCT-A-ATGCACATATTTGGCATAAAAGCATC
66 TAAAAAATAG-TC-TAAAATA-ATGAACCTATCCCTAATATGCAC--ATTCAACATAAAAGCATC
* * * *
1422085 TTGGGAA-CTACATTAGACTTGGTTCTAAAG-G
126 TAGGGAATC-ACATGAGACTTGGTTCTAATGCA
*
1422116 AAATTACTAAAATGCCCT
1 AAATTACCAAAATGCCCT
1422134 TAGAGATTAC
Statistics
Matches: 391, Mismatches: 75, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
154 6 0.02
155 22 0.06
156 229 0.59
157 15 0.04
158 107 0.27
159 12 0.03
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (157 bp):
AAATTACCAAAATGCCCTCTAAGGTATACCTTTGACATAAAAGTATCTCGATAACCCTAAAAGAC
TAAAAAATAGTCTAAAATAATGAACCTATCCCTAATATGCACATTCAACATAAAAGCATCTAGGG
AATCACATGAGACTTGGTTCTAATGCA
Found at i:1423478 original size:64 final size:64
Alignment explanation
Indices: 1423403--1423533 Score: 262
Period size: 64 Copynumber: 2.0 Consensus size: 64
1423393 GAAAATTTTG
1423403 AATAATATTTTTTATTTTTATTAATTTTTTCTTGATAATTACAATTAAAGTTAAGAATGCATAA
1 AATAATATTTTTTATTTTTATTAATTTTTTCTTGATAATTACAATTAAAGTTAAGAATGCATAA
1423467 AATAATATTTTTTATTTTTATTAATTTTTTCTTGATAATTACAATTAAAGTTAAGAATGCATAA
1 AATAATATTTTTTATTTTTATTAATTTTTTCTTGATAATTACAATTAAAGTTAAGAATGCATAA
1423531 AAT
1 AAT
1423534 TATTAGCCTA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.50
Consensus pattern (64 bp):
AATAATATTTTTTATTTTTATTAATTTTTTCTTGATAATTACAATTAAAGTTAAGAATGCATAA
Found at i:1423704 original size:11 final size:11
Alignment explanation
Indices: 1423671--1423710 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
1423661 TGAGACTAGT
*
1423671 TTAAAAAAAAA
1 TTAAAAGAAAA
*
1423682 TAAAATAGAAAA
1 TTAAA-AGAAAA
1423694 TTAAAAGAAAA
1 TTAAAAGAAAA
1423705 TTAAAA
1 TTAAAA
1423711 TTAAAATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (11 bp):
TTAAAAGAAAA
Found at i:1424995 original size:66 final size:66
Alignment explanation
Indices: 1424918--1425659 Score: 355
Period size: 66 Copynumber: 11.4 Consensus size: 66
1424908 ACTACTAGGC
* * * * * **
1424918 CAAAACATAAGTTGAAAAGGGGTTGGTTGAGATGAAACCATACAAACCAACTAAAGGTGACCAGG
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGAGATGAAACCATACGAACCAACTATTGGTGACCAGG
1424983 G
66 G
* * * ** *
1424984 CAAAACCTAAG-TCAAAAAGGATTGAG-TGGGACAAAACCATACGAACCAACT-TTGGATGTCCA
1 CAAAACCTAAGTTAAAAAAGGGTTG-GCTGAGATGAAACCATACGAACCAACTATTGG-TGACCA
* *
1425046 AGA
64 GGG
* * * * * *
1425049 TAAAACCTAAATAAAAAAAGGGTTGGCT-AGGATGAAACTATATGAACAAACT-TTGGATGACCA
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGA-GATGAAACCATACGAACCAACTATTGG-TGACCA
1425112 GGG
64 GGG
** * * ** * *
1425115 -TGAACTTGAA-TCTAAAAAA-GGTTGG-TCGAAATGAAACCATATAAACCAACT-TTAGTGACT
1 CAAAACCT-AAGT-TAAAAAAGGGTTGGCT-GAGATGAAACCATACGAACCAACTATTGGTGACC
1425175 AGGG
63 AGGG
* * * ** ** *
1425179 CAAAGCCTAAGTTAAAAAAGAGTTGGCTAAGATGAAACCATACGAATGAACTAAGGGTGACCAAG
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGAGATGAAACCATACGAACCAACTATTGGTGACCAGG
1425244 G
66 G
** ** * * * *
1425245 TGAAACCTAAGTCCAAAAATGGTTGGTTGGGATGAAACCATACGAACCAACT-TTAGATGACCAG
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGAGATGAAACCATACGAACCAACTATT-GGTGACCAG
1425309 GG
65 GG
* * * * * * *
1425311 CAAAACTTGAGTCAAAAAAAGATTGGC-CAGTACGAAACCATACGAACCAACT-TTGGATGACCA
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGAG-ATGAAACCATACGAACCAACTATTGG-TGACCA
1425374 GGG
64 GGG
* ** ** * *
1425377 CAAAACCTAAG-T--CAAAGGGTTGGCCAAGATGAAACCATAAAAACTAACT-TTGGTGACGAGG
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGAGATGAAACCATACGAACCAACTATTGGTGACCAGG
1425438 G
66 G
* * * * * * * * * *
1425439 AAAAACTTAA-ATAAAAAATAGATTGG-TCGAGATGAAACTATACAAACCAACTAATGGTAACTA
1 CAAAACCTAAGTTAAAAAA-GGGTTGGCT-GAGATGAAACCATACGAACCAACTATTGGTGACCA
1425502 GGG
64 GGG
** * * * ** * * * ** * *
1425505 TGAAACTTGAGTT-GAAATTGGTTGAC-AAGGATGAAACCATACAAACCAACTAAGGGTGACTAA
1 CAAAACCTAAGTTAAAAAAGGGTTGGCTGA-GATGAAACCATACGAACCAACTATTGGTGACCAG
1425568 GG
65 GG
* * ** * *
1425570 CAAAACCTAAGTCGAAAAGAA--GTTGGCT-AGGATGAAACCATATGAACCAACTAAGGGTAACT
1 CAAAACCTAAGT-TAAAA-AAGGGTTGGCTGA-GATGAAACCATACGAACCAACTATTGGTGACC
*
1425632 AGAG
63 AGGG
1425636 CAAAACCTAAGTT-AAAAAGGGTTG
1 CAAAACCTAAGTTAAAAAAGGGTTG
1425660 ACTAAGGCGA
Statistics
Matches: 509, Mismatches: 134, Indels: 67
0.72 0.19 0.09
Matches are distributed among these distances:
62 17 0.03
63 32 0.06
64 29 0.06
65 181 0.36
66 246 0.48
67 3 0.01
68 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (66 bp):
CAAAACCTAAGTTAAAAAAGGGTTGGCTGAGATGAAACCATACGAACCAACTATTGGTGACCAGG
G
Found at i:1425110 original size:131 final size:129
Alignment explanation
Indices: 1424948--1425392 Score: 371
Period size: 131 Copynumber: 3.4 Consensus size: 129
1424938 GGTTGGTTGA
* * **
1424948 GATGAAACCATACAAACCAACTAAAGG-TGACCAGGGCAAAACCTAAGTCAAAAAGGATTGAGTG
1 GATGAAACCATACGAACAAACT-TTGGATGACCAGGGCAAAACCTAAGTCAAAAAGG-TTG-GTG
* * * * ** *
1425012 GGACAAAACCATACGAACCAACTTTGGATGTCCAAGATAAAACCTAAATAAAAAAAGGGTTGGCT
63 GGAAAAAACCATACGAACCAACTTTAGATGACCAGGGCAAAACCTAAGTAAAAAAAGGGTTGGCT
1425077 AG
128 AG
* * ** *
1425079 GATGAAACTATATGAACAAACTTTGGATGACCAGGG-TGAACTTGAA-TCTAAAAAAGGTTGGT-
1 GATGAAACCATACGAACAAACTTTGGATGACCAGGGCAAAACCT-AAGTC--AAAAAGGTTGGTG
* ** * * * *
1425141 CGAAATGAAACCATATAAACCAACTTTAG-TGACTAGGGCAAAGCCTAAGTTAAAAAAGAGTTGG
63 GGAAA--AAACCATACGAACCAACTTTAGATGACCAGGGCAAAACCTAAGTAAAAAAAGGGTTGG
*
1425205 CTAA
126 CTAG
** ** * * **
1425209 GATGAAACCATACGAATGAACTAAGGGTGACCAAGGTGAAACCTAAGTCCAAAAATGGTTGGTTG
1 GATGAAACCATACGAACAAACTTTGGATGACCAGGGCAAAACCTAAGT-CAAAAA-GGTTGG-TG
** * * *
1425274 GGATGAAACCATACGAACCAACTTTAGATGACCAGGGCAAAACTTGAGTCAAAAAAA-GATTGGC
63 GGAAAAAACCATACGAACCAACTTTAGATGACCAGGGCAAAACCTAAGT-AAAAAAAGGGTTGGC
*
1425338 CAG
127 TAG
* * *
1425341 TACGAAACCATACGAACCAACTTTGGATGACCAGGGCAAAACCTAAGTCAAA
1 GATGAAACCATACGAACAAACTTTGGATGACCAGGGCAAAACCTAAGTCAAA
1425393 GGGTTGGCCA
Statistics
Matches: 241, Mismatches: 59, Indels: 28
0.73 0.18 0.09
Matches are distributed among these distances:
129 3 0.01
130 74 0.31
131 86 0.36
132 70 0.29
133 8 0.03
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.19
Consensus pattern (129 bp):
GATGAAACCATACGAACAAACTTTGGATGACCAGGGCAAAACCTAAGTCAAAAAGGTTGGTGGGA
AAAAACCATACGAACCAACTTTAGATGACCAGGGCAAAACCTAAGTAAAAAAAGGGTTGGCTAG
Found at i:1425280 original size:196 final size:197
Alignment explanation
Indices: 1424938--1425415 Score: 475
Period size: 196 Copynumber: 2.4 Consensus size: 197
1424928 GTTGAAAAGG
* * ** * *
1424938 GGTTGGTTGAGATGAAACCATACAAACCAACTAAAGGTGACCAGGGCAAAACCTAAGTCAAAAAG
1 GGTTGGTCGAAATGAAACCATACAAACCAACTTTA-GTGACCAGGGCAAAACCTAAGTTAAAAAA
** ** ** *
1425003 GA-TTGAG-TGGGACAAAACCATACGAACCAACTTTGGATGTCCAAGATAAAACCTAAATAAAAA
65 GAGTTG-GCTAAGATGAAACCATACGAACCAACTAAGGATGACCAAGATAAAACCTAAATAAAAA
* * * ** *
1425066 AAGGGTTGGCTAGGATGAAACTATATGAACAAACTTTGGATGACCAGGG-TGAACTTGAATCTAA
129 AAGGGTTGGCTAGGATGAAACCATACGAACAAACTTTAGATGACCAGGGCAAAACTTGAATCAAA
1425130 AAAA
194 AAAA
* * *
1425134 GGTTGGTCGAAATGAAACCATATAAACCAACTTTAGTGACTAGGGCAAAGCCTAAGTTAAAAAAG
1 GGTTGGTCGAAATGAAACCATACAAACCAACTTTAGTGACCAGGGCAAAACCTAAGTTAAAAAAG
** * * * * **
1425199 AGTTGGCTAAGATGAAACCATACGAATGAACTAAGGGTGACCAAGGTGAAACCTAAGTCCAAAAA
66 AGTTGGCTAAGATGAAACCATACGAACCAACTAAGGATGACCAAGATAAAACCTAAATAAAAAAA
* * * * *
1425264 TGGTTGGTTGGGATGAAACCATACGAACCAACTTTAGATGACCAGGGCAAAACTTGAGTCAAAAA
131 GGGTTGGCTAGGATGAAACCATACGAACAAACTTTAGATGACCAGGGCAAAACTTGAATCAAAAA
1425329 AA
196 AA
* * * * * * *
1425331 GATTGG-CCAGTACGAAACCATACGAACCAACTTTGGATGACCAGGGCAAAACCTAAG-T--CAA
1 GGTTGGTCGA-AATGAAACCATACAAACCAACTTTAG-TGACCAGGGCAAAACCTAAGTTAAAAA
* *
1425392 AGGGTTGGCCAAGATGAAACCATA
64 AGAGTTGGCTAAGATGAAACCATA
1425416 AAAACTAACT
Statistics
Matches: 230, Mismatches: 47, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
195 52 0.23
196 118 0.51
197 42 0.18
198 18 0.08
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (197 bp):
GGTTGGTCGAAATGAAACCATACAAACCAACTTTAGTGACCAGGGCAAAACCTAAGTTAAAAAAG
AGTTGGCTAAGATGAAACCATACGAACCAACTAAGGATGACCAAGATAAAACCTAAATAAAAAAA
GGGTTGGCTAGGATGAAACCATACGAACAAACTTTAGATGACCAGGGCAAAACTTGAATCAAAAA
AA
Found at i:1425629 original size:131 final size:130
Alignment explanation
Indices: 1425469--1425724 Score: 300
Period size: 131 Copynumber: 2.0 Consensus size: 130
1425459 GATTGGTCGA
* * * ** * * * **
1425469 GATGAAACTATACAAACCAACTAATGGTAACTAGGGTGAAACTTGAGTTGAAATTGGTTGAC-AA
1 GATGAAACCATACAAACCAACTAAGGGTAACTAGAGCAAAACCTAAGTTAAAAAGGGTTGACTAA
* *
1425533 GGATGAAACCATACA-AACCAACTAAGGGTGACTAAGGCAAAACCTAAGTCGAAAAGAAGTTGGC
66 GG-CGAAACCATA-ATAACCAACTAAGGGTAACTAAGGCAAAACCTAAGTCGAAAA-AAGTTGGC
1425597 TAG
128 TAG
**
1425600 GATGAAACCATATGAACCAACTAAGGGTAACTAGAGCAAAACCTAAGTTAAAAAGGGTTGACTAA
1 GATGAAACCATACAAACCAACTAAGGGTAACTAGAGCAAAACCTAAGTTAAAAAGGGTTGACTAA
*** **
1425665 GGCGAAACCATAATAGTTAACTAAGGGTAACTAAGGTGAAACCTAAGTCGAAAAAAGTTG
66 GGCGAAACCATAATAACCAACTAAGGGTAACTAAGGCAAAACCTAAGTCGAAAAAAGTTG
1425725 CCCAGGCAAA
Statistics
Matches: 104, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
130 7 0.07
131 93 0.89
132 4 0.04
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (130 bp):
GATGAAACCATACAAACCAACTAAGGGTAACTAGAGCAAAACCTAAGTTAAAAAGGGTTGACTAA
GGCGAAACCATAATAACCAACTAAGGGTAACTAAGGCAAAACCTAAGTCGAAAAAAGTTGGCTAG
Found at i:1426045 original size:65 final size:65
Alignment explanation
Indices: 1425976--1426160 Score: 194
Period size: 65 Copynumber: 2.8 Consensus size: 65
1425966 ACTAAGACAG
* * *
1425976 AACCTAAG-CAAAAAAATGTTGGCTAGGACGAAACCATACGAACTAACTTTAGGTGA-TGAGGGC
1 AACCTAAGTCAAAAAAAGGTTAGCTAGGACGAAACCATACGAACCAACTTT-GGTGACT-AGGGC
1426039 GA
64 GA
* ** * * * *
1426041 AACCTAAGTCTAAAATGGGTTAGTTAGGACGAAATCATATGAACCAACTTTGGTGACTAGGGTGA
1 AACCTAAGTCAAAAAAAGGTTAGCTAGGACGAAACCATACGAACCAACTTTGGTGACTAGGGCGA
** * * * *
1426106 AACCTAAGTTGAAAAAGGGTTAGCTGGGACAAAACCATACAAACCAACTTTGGTG
1 AACCTAAGTCAAAAAAAGGTTAGCTAGGACGAAACCATACGAACCAACTTTGGTG
1426161 GCCAAGAGGA
Statistics
Matches: 99, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
65 65 0.66
66 34 0.34
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (65 bp):
AACCTAAGTCAAAAAAAGGTTAGCTAGGACGAAACCATACGAACCAACTTTGGTGACTAGGGCGA
Found at i:1426090 original size:66 final size:65
Alignment explanation
Indices: 1425997--1426160 Score: 206
Period size: 65 Copynumber: 2.5 Consensus size: 65
1425987 AAAAATGTTG
* *
1425997 GCTAGGACGAAACCATACGAACTAACTTTAGGTGA-TGAGGGCGAAACCTAAGTCT-AAAATGGG
1 GCTAGGACGAAACCATACGAACCAACTTT-GGTGACT-AGGGCGAAACCTAAGT-TGAAAAAGGG
1426060 TTA
63 TTA
* * * *
1426063 GTTAGGACGAAATCATATGAACCAACTTTGGTGACTAGGGTGAAACCTAAGTTGAAAAAGGGTTA
1 GCTAGGACGAAACCATACGAACCAACTTTGGTGACTAGGGCGAAACCTAAGTTGAAAAAGGGTTA
* * *
1426128 GCTGGGACAAAACCATACAAACCAACTTTGGTG
1 GCTAGGACGAAACCATACGAACCAACTTTGGTG
1426161 GCCAAGAGGA
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
64 1 0.01
65 57 0.68
66 26 0.31
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (65 bp):
GCTAGGACGAAACCATACGAACCAACTTTGGTGACTAGGGCGAAACCTAAGTTGAAAAAGGGTTA
Found at i:1426359 original size:64 final size:65
Alignment explanation
Indices: 1426249--1426426 Score: 175
Period size: 65 Copynumber: 2.7 Consensus size: 65
1426239 GACTAGGATG
* * * * *
1426249 GAACCTAAGTTGAAAAAGGGGTTAGCTAGGATAAAACCATATGAACCAATTAAAGGTGACCAAGG
1 GAACCTAAG-TCAAAAA-CGGTTGGCCAGGATAAAAACATATGAACCAATTAAAGGTGA-CAAGG
1426314 G-A
63 GCA
* *** *
1426316 -AACCTAAGTCAAAAACGGTTGGCCAGGATAAAAACATACGAACCAATTTTGGGTGACGAGGGCA
1 GAACCTAAGTCAAAAACGGTTGGCCAGGATAAAAACATATGAACCAATTAAAGGTGACAAGGGCA
* *
1426380 GAACCTAAGTCGAAAAGGGTTGGCC-GAGAT-AAAACTATATGAACCAA
1 GAACCTAAGTCAAAAACGGTTGGCCAG-GATAAAAAC-ATATGAACCAA
1426427 CTTTTAATGA
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
63 5 0.05
64 40 0.43
65 41 0.44
66 8 0.09
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (65 bp):
GAACCTAAGTCAAAAACGGTTGGCCAGGATAAAAACATATGAACCAATTAAAGGTGACAAGGGCA
Found at i:1426403 original size:65 final size:65
Alignment explanation
Indices: 1426249--1426432 Score: 187
Period size: 64 Copynumber: 2.8 Consensus size: 65
1426239 GACTAGGATG
* * * * **
1426249 GAACCTAAGTTGAAAAAGGGGTTAGCTAGGATAAAACCATATGAACCAATTAAAGGTGACCAAGG
1 GAACCTAAGTCG-AAAA-GGGTTGGCCAGGATAAAAACATATGAACCAATTTTAGGTGACCAAGG
1426314 GA
64 GA
* * * * *
1426316 -AACCTAAGTCAAAAACGGTTGGCCAGGATAAAAACATACGAACCAATTTTGGGTGA-CGAGGGC
1 GAACCTAAGTCGAAAAGGGTTGGCCAGGATAAAAACATATGAACCAATTTTAGGTGACCAAGGG-
1426379 A
65 A
1426380 GAACCTAAGTCGAAAAGGGTTGGCC-GAGAT-AAAACTATATGAACCAACTTTTA
1 GAACCTAAGTCGAAAAGGGTTGGCCAG-GATAAAAAC-ATATGAACCAA-TTTTA
1426433 ATGACCAGGG
Statistics
Matches: 97, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
63 5 0.05
64 40 0.41
65 39 0.40
66 13 0.13
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (65 bp):
GAACCTAAGTCGAAAAGGGTTGGCCAGGATAAAAACATATGAACCAATTTTAGGTGACCAAGGGA
Found at i:1427781 original size:475 final size:476
Alignment explanation
Indices: 1426854--1428563 Score: 2287
Period size: 475 Copynumber: 3.6 Consensus size: 476
1426844 AAAAGTCCTT
* * *
1426854 TTTTTCTTAAAAACAAAGTTCATCCCTTAAATAATTAGCAAGCATTGATTCTCGTAATAGTCTCC
1 TTTTCCTTAAAATCAAAATTCATCCCTTAAATAA-TAGCAAGCATTGATTCTCGTAATAGTCTCC
* *
1426919 ATTCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATACTTT
65 ATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTT
* *
1426984 GATGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
130 GATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
1427049 GACAAACATTAATAGTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTT
195 GACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* **
1427114 CTCATAAAGATACATGATATTGATGCTTTGG-TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
260 CTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * *
1427178 ATAATGTCTAAG-TCCGGGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCATTCATT
325 ATAATGTCTAAGTTCC-TGCCTTAAATGAGACAAACATGGATTCTACTAAAGATCTTCATTCATT
** *
1427242 TTGTGATTAGCCACTATAAACACATTCTCCTTATTAGGGTAAATGATATTGAT-AGTTTTCTTTT
389 TTGTGATTAGGTACTATAAACACATTCT-CTTATTAGGATAAATGATATTGATGA-TTTTCTTTT
* * **
1427306 GTATGGAAATCTTTTCTTTGCTATA
452 GCATGGAAATATTTTCTTTGCCCTA
* * * *
1427331 GTTTCCATAAAATCAAAATTCATCCCTTAAATAA-GGCAAGCATTTATTCTCGTAATAGTCTCCA
1 TTTTCCTTAAAATCAAAATTCATCCCTTAAATAATAGCAAGCATTGATTCTCGTAATAGTCTCCA
* * * * * *
1427395 TTCCTTTT-AAGATTGGGAACCAAGAATACATTCCCTTCATTATGATACAAGAGATTGATGCTTT
66 TT-CTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTT
* * * * *
1427459 GGTGTCACAAGAAAAACTTTTCTTTCAACCGTTTTTGAT-GCAATCATAGTTTGTCTGTTTAATA
130 GATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAATA
* * * * * *
1427523 AGACAAAAATGAATAATCATACTAATCAC-ATTCTTTTTAGGATTAGGCACCACAAACATAGTCT
194 AGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* *
1427587 TCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTCTCTTCCCACCAATTTT
259 TCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
* * * *
1427652 TATAATGTCTAAGTTCCTGCCTTAAATAAGAAAAACATGGATTCTACTAACGATCTTCACTCATT
324 TATAATGTCTAAGTTCCTGCCTTAAATGAGACAAACATGGATTCTACTAAAGATCTTCATTCATT
*
1427717 TTGTGATTAGGTGCTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTG
389 TTGTGATTAGGTACTATAAACACATTCTCTT-ATTAGGATAAATGATATTGATGATTTTCTTTTG
1427782 CATGGAAATATTTTCTTTGCCCTA
453 CATGGAAATATTTTCTTTGCCCTA
* * * *
1427806 TTTTCCTTAAAATCAAAATTTATCCCTTAAAT-ATGGCAAGCATCGATTCTTGTAACT-GTCTCC
1 TTTTCCTTAAAATCAAAATTCATCCCTTAAATAATAGCAAGCATTGATTCTCGTAA-TAGTCTCC
* * *** * * * * *
1427869 ATTCTTTT-AAGCATTGGGAACCAAGAATGTATTCCCTTCATTACGATACATGACACTGTTGCTT
65 ATTCTTTTCAAG-ATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTT
* * * * * * *
1427933 TGGTCTCGCAAGAAAACCTTTTTTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTTAATA
129 TGATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
**
1427998 AGACAAATGTGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
194 AGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
** *
1428063 TCTCATAAGGATACATGATATTGACACTTTGGTTTTTCAAGAAAGGCTTTCTTGCCACCAATTTT
259 TCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
* ** *
1428128 TATAATGTATAAGTTTGTGCCTTAAATGAGACAAACATCGATTCTAGC-AATA-ATCTTCATTCA
324 TATAATGTCTAAGTTCCTGCCTTAAATGAGACAAACATGGATTCTA-CTAA-AGATCTTCATTCA
* * *
1428191 TTTT-TGATTAGGTACTATAAACTCATTCTTCTTATTACGATAAATTATATTGATGATTTTCTTT
387 TTTTGTGATTAGGTACTATAAACACATTC-TCTTATTAGGATAAATGATATTGATGATTTTCTTT
* * *
1428255 TGCATGGAAATGTTTCCTTTGCCCTT
451 TGCATGGAAATATTTTCTTTGCCCTA
* *
1428281 TTTTCCTTAGAAA-CAAAGTTCATCCCTTAAATAATTAGCAAGCGTTGATTCTCGTAATAGTCTC
1 TTTTCCTTA-AAATCAAAATTCATCCCTTAAATAA-TAGCAAGCATTGATTCTCGTAATAGTCTC
*
1428345 CATTCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTT
64 CATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTT
**
1428410 TGATGTCACAAGAAAAGCTTTTCTTTCAATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
129 TGATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
1428475 AGACAAACATGAATAGTTACACTAATCCTTATTCTTTCCACGATTAGGCACCATAAACACAGTCT
194 AGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* *
1428540 TCCCATAAGGATACAAGATATTGA
259 TCTCATAAGGATACATGATATTGA
1428564 TGATTTTCTT
Statistics
Matches: 1081, Mismatches: 133, Indels: 38
0.86 0.11 0.03
Matches are distributed among these distances:
474 73 0.07
475 599 0.55
476 168 0.16
477 239 0.22
478 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (476 bp):
TTTTCCTTAAAATCAAAATTCATCCCTTAAATAATAGCAAGCATTGATTCTCGTAATAGTCTCCA
TTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTTG
ATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
ACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
TCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTA
TAATGTCTAAGTTCCTGCCTTAAATGAGACAAACATGGATTCTACTAAAGATCTTCATTCATTTT
GTGATTAGGTACTATAAACACATTCTCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
GGAAATATTTTCTTTGCCCTA
Found at i:1428750 original size:317 final size:320
Alignment explanation
Indices: 1428237--1428849 Score: 820
Period size: 317 Copynumber: 1.9 Consensus size: 320
1428227 ACGATAAATT
* * ** *
1428237 ATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTTTCCTTAGAAACAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGGAAATATTTCCGTTGCCCTACTTTCCTTAGAAACAAAATTC
* * * * * *
1428302 ATCCCTTAAATAATTAGCAAGCGTTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAAC
66 ATCCCGTAAATAATGAGCAAGCATTGATTCTCGTAATAGTCTCAATTCTATTCAAGATTAGGAAC
* * *
1428367 CAAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTTGATGTCACAAGAAAAGCTTTT
131 CAAAAACACATTCCCTTCATTACGATACAAGACATTGATACTTTGATCTCACAAGAAAAACTTTT
* *** * *
1428432 CTTTCAATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTTACAC
196 CTATCAACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACAC
**
1428497 TAATCCTTATTCTTTCCACGATTAGGCACCATAAACACAGTCTTCCCATAAGGATACAAG
261 TAATCCCCATTCTTTCCACGATTAGGCACCATAAACACAGTCTTCCCATAAGGATACAAG
* * *
1428557 ATATTGATGATTTTCTTTTGCATGGAAATATTTTCGTTGCCCTACTTTCCTTATAATCAAAATTC
1 ATATTGATGATTTTCTTTTGCATGGAAATATTTCCGTTGCCCTACTTTCCTTAGAAACAAAATTC
* * *
1428622 ATTCCGTAAAT-ATGA-CAAGCATTGATTCTTGTAACT-GTCTCAATTC-ATTCAAGATTGGGAA
66 ATCCCGTAAATAATGAGCAAGCATTGATTCTCGTAA-TAGTCTCAATTCTATTCAAGATTAGGAA
* * * * * *
1428683 CCAAGAATACATTCCCTTCATTACGATACATGACATTGTTGCTTTGATCTCGCAAGAAAAACTTT
130 CCAAAAACACATTCCCTTCATTACGATACAAGACATTGATACTTTGATCTCACAAGAAAAACTTT
* * * *
1428748 TCTATCAACCATTTTTGATAGAATCCAAGTTTATCTCTTTAATAAGACAAATATGAATAGTCATA
195 TCTATCAACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACA
* **
1428813 CTAATCCCCATTCTTTTCTGGATTAGGCACCATAAAC
260 CTAATCCCCATTCTTTCCACGATTAGGCACCATAAAC
1428850 CTGGTCTTCG
Statistics
Matches: 251, Mismatches: 41, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
317 155 0.62
318 26 0.10
319 4 0.02
320 66 0.26
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (320 bp):
ATATTGATGATTTTCTTTTGCATGGAAATATTTCCGTTGCCCTACTTTCCTTAGAAACAAAATTC
ATCCCGTAAATAATGAGCAAGCATTGATTCTCGTAATAGTCTCAATTCTATTCAAGATTAGGAAC
CAAAAACACATTCCCTTCATTACGATACAAGACATTGATACTTTGATCTCACAAGAAAAACTTTT
CTATCAACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACAC
TAATCCCCATTCTTTCCACGATTAGGCACCATAAACACAGTCTTCCCATAAGGATACAAG
Found at i:1431217 original size:476 final size:476
Alignment explanation
Indices: 1428851--1431702 Score: 3571
Period size: 476 Copynumber: 6.0 Consensus size: 476
1428841 ACCATAAACC
*
1428851 TGGTCTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGCGCCTCAAATG
1 TGGT-TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATG
* * * * *
1428916 AGGCAAACATGCATTCTAGTAAACATCTTCATTCATTATGTGATTAGGCGCTATAAACACATTCT
65 AGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* *
1428981 CCTCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTT
130 CCT-TATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTCGCCCTATTT
* * * * * *
1429045 TCCTTAAAATCAAAATTCATCTCTTAAATATGACAAGCATCGATTCTTGTAACTGTCTCCATTCT
194 TCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
* * *
1429110 TTTCAGGATTAGGAACCAAGAATACATTCCCTTCATTATGATACATGACATT-ATTGCTTTGGTC
259 TTTCAGGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTG
* * *
1429174 TTGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCCAAG-TTATCTCATT-AATAAGAC
323 TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTC-TTAAATAAGAC
* * * *
1429237 AAACTTTAATAGTAATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTC
387 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * *
1429302 AGAAGGATACACGATACTGACGCTT
452 ATAAGGATACACGATATTGATGCTT
* * *
1429327 TGTTTTCGCAAGAAAGGCTTTCGTCCCACCAATTTTT-TAATGTCTAAGTTCGTGCCTTAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGA
** * * * * * * *
1429391 GACAATTATGGATTCTAGTCATGAACTTTATTCATTTTGTGATTAGGTACAACAAACACATTCTC
66 GACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * * * *
1429456 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATGTTTCCTTTGCCCTTTTTTC
131 CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTCGCCCTATTTTC
* * * * ** * *
1429521 CTTAAAATTAAAGTTCATCCCTTAAACAATTAGCAAGCATTGATTCTTATAATAGTCTCCATTAT
196 CTTAAAATCAAAATTCATCCCTTAAATAA--GGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
* * * **
1429586 TTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTAATGT
259 TTTCAGGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * *
1429651 CACAAGAAAAGCTTTTCTTTCAATCGTTTTTGATAGAATGAAAGTTTATCTCCTAAATAAGACAC
324 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAA
* * *
1429716 ACGTTAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAGCATAGTCTTCTCAT
389 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
1429781 AAGGATACACGATATTGATGCTT
454 AAGGATACACGATATTGATGCTT
* * * *
1429804 TGGCTTCACAAGAAAGGCTTT-TTCCCACCAATTTTTATAATATCAAAGTTCGTGCCTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGA
* * * *
1429868 GACAAACATGGATTCTA-CAAACGATCTTCATTCATTTTATGATTAGTCACTATAAACATATTCT
66 GACAAACATGGATTCTAGTAAA-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* ** * *
1429932 CCTCATTACAATAAATGGTATTGATGATTTTCTTTTGCAAGGAAA-ATTTTTCTTCGCCCTATTT
130 CCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATA-TTTTCTTCGCCCTATTT
* * * * * *
1429996 TCCTTAAAATCAAAATTCA-CCTCTTAAATATGACAAGTATCGATTCTCGAAACTA-TTTCCATT
194 TCCTTAAAATCAAAATTCATCC-CTTAAATAAGGCAAGCATTGATTCTCGTAAC-AGTCTCCATT
* * * * * *
1430059 TTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTACGATACATGACATTGTTGCTTGGGT
257 CTTTTCAGGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * * *
1430124 TTTGTAAGAAAACCTTTT-TTTCAACCTTTTTTGATAGAATCAAAGTTTATCTCTTTAATCAGAC
322 GTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAC
** * ** * * *
1430188 AAATGTGAATAGTCAGACTAATCCAGATTCTTTTCAAGATTAGGCACCATAAATATACTCTTCTC
387 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* **
1430253 ATAAGGATACATGATATTGACACTT
452 ATAAGGATACACGATATTGATGCTT
* * * *
1430278 TAGTTTCGGAAGAAAGGCTTTCTTGCCACCAATTTTTATAATGTCTAAGTTCGTGCCTTAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGA
* * * * *
1430343 GACAAACGTCGATTCTAGTAATA-ATCTTCATTCATTTTGTGATTAGGTACTATAAACATATTAT
66 GACAAACATGGATTCTAGTAA-AGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * ** *
1430407 CCTTATTAGGATAAATTAT-TGTGATTATTTTCTTTTGCATGGAAATATTTCCTTTTCCCTTTTT
130 CCTTATTAGGATAAATGATAT-TGATGATTTTCTTTTGCATGGAAATATTTTCTTCGCCC-TATT
* ** ** ** * *
1430471 TTCCTGAAAATCAATGTTCATCCCTTAAATAATTACCAAGTGTTGATTCTCGTAATAGCCTCCAT
193 TTCCTTAAAATCAAAATTCATCCCTTAAATAA--GGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * *
1430536 TCTTTTCATGATTAGGAACCCAA-AACACATTTCCTTCATTAGGAAACATGACATTGATACTTTG
256 TCTTTTCAGGATTAGGAA-CCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * *
1430600 ATGTCGTAAGATAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
320 GTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
1430665 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
385 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
1430730 TCATAAGGATACACGATATTGATGCTT
450 TCATAAGGATACACGATATTGATGCTT
* * *
1430757 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCCATTTTTATAATGTCTAAGTCCGTGCCTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGA
* * *
1430822 GGCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGGGATTAGCCACTATAAACACATTCTC
66 GACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * * ** *
1430887 CTTATTAGGGTAAAGGATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTCGCTATAGTTTC
131 CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTCGCCCTATTTTC
* * *
1430952 CATAAAATCAAAATTCATCCCTTAAATAAGGTAAGCATTGATTCTCGTAACAATCTCCATTCTTT
196 CTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * * * * * * * * *
1431017 TCTGGATTGGGAACCAAGAATATATTCCCTTTATTACGA-AGCCTGACATTGTTGCTTTTGTCTC
261 TCAGGATTAGGAACCAAGAACACATTCCCTTCATTAGGATA-CATGACATTGATGCTTTGGTGTC
* * * *
1431081 GCAAGAAAAGCTTTTCTTTTAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAG
325 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAA
* * * * * * *
1431146 CATGAATAGTCATTCAAATCTCCATTCTTTTCAAGATTAGGCAACGTAAACATAGCCTTCTCATA
390 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
*
1431211 AGGATACACGATATTGATGGTT
455 AGGATACACGATATTGATGCTT
* ** * *
1431233 TGGTTTCACAAGAAAGGCTTTCTTCCCAGTAATTTTTATAATGTTTAACTTCGTGCCTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGA
** *
1431298 GGTAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTA
66 GACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * ** *
1431363 CTTATTAGGGTAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCTATAGTTTC
131 CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTCGCCCTATTTTC
* *
1431427 CTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTT
196 CTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * *
1431492 TCAGGATT-GAGAA-CAAGAACACATTCCCTTCATTAGGCTGCATGAGATTGATGCTTTGGTGTC
261 TCAGGATTAG-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * *
1431555 ACAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAA
325 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAA
* *
1431620 CATGAATAGTAATACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
390 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
1431685 AGGATACACGATATTGAT
455 AGGATACACGATATTGAT
1431703 AATTTTCTTT
Statistics
Matches: 2030, Mismatches: 317, Indels: 60
0.84 0.13 0.02
Matches are distributed among these distances:
474 465 0.23
475 364 0.18
476 529 0.26
477 271 0.13
478 117 0.06
479 283 0.14
480 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGA
GACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTCGCCCTATTTTC
CTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
TCAGGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
CAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC
ATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAA
GGATACACGATATTGATGCTT
Found at i:1431781 original size:317 final size:316
Alignment explanation
Indices: 1431378--1432019 Score: 901
Period size: 317 Copynumber: 2.0 Consensus size: 316
1431368 TAGGGTAAAT
* * * *
1431378 GATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCTATAGTTTCCTTAAAATCAAAATTC
1 GATATTGATAATTTTTTTTGCATGAAAATATTTTCTTTGCCATAGTTTCCTTAAAATCAAAATTC
* * * *
1431443 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGAGAAC-A
66 ATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTC-TTTCAGGATTGAGAACTA
*** * * * * *
1431507 AGAACACATTCCCTTCATTAGGCTGCATGAGATTGATGCTTTGGTGTCACAAGAAA-AGCTTTTC
130 AGAACACATTCCCTTCATTACAATACATGACAATGATGCTTTGATCTCACAAGAAATA-CTTTTC
* * *
1431571 TTTCAACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTAATACT
194 TTTCAACCATTTTTGATAGAATCAAAGCTTATATCTTAAATAAGACAAACATGAATAATAATACT
* *
1431636 AATCCCCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
259 AATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTCTTCTCATAAGGATACAC
* * *
1431694 GATATTGATAATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTATAATCAAAATT
1 GATATTGATAATTTT-TTTTGCATGAAAATATTTTCTTTGCCATAGTTTCCTTAAAATCAAAATT
* ** *
1431759 CATCCCTTAAATATGACAAGCATCGATTCTTGTAACAGTCTCAATTCTTTCAGGATTGGGAACTA
65 CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTCAGGATTGAGAACTA
* * * **
1431824 AGAATACATTCCCTTTATTACAATACATGACAATGTTGCTTTGATCTTGCAAGAAATACTTTTCT
130 AGAACACATTCCCTTCATTACAATACATGACAATGATGCTTTGATCTCACAAGAAATACTTTTCT
* * * *
1431889 TTCAACCATTTTTGATAGAATCTAAGCTTATCTCTTTAATAAGACAAACATGAATAATCATACTA
195 TTCAACCATTTTTGATAGAATCAAAGCTTATATCTTAAATAAGACAAACATGAATAATAATACTA
*
1431954 ATCCCCATTCTTTTCAGGATTAGGAACCATAAACCTAGTCTTCTCATAAGGATACAC
260 ATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTCTTCTCATAAGGATACAC
1432011 GATATTGAT
1 GATATTGAT
1432020 GCTTTGGTTT
Statistics
Matches: 285, Mismatches: 38, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
316 29 0.10
317 255 0.89
318 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (316 bp):
GATATTGATAATTTTTTTTGCATGAAAATATTTTCTTTGCCATAGTTTCCTTAAAATCAAAATTC
ATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTCAGGATTGAGAACTAA
GAACACATTCCCTTCATTACAATACATGACAATGATGCTTTGATCTCACAAGAAATACTTTTCTT
TCAACCATTTTTGATAGAATCAAAGCTTATATCTTAAATAAGACAAACATGAATAATAATACTAA
TCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTCTTCTCATAAGGATACAC
Found at i:1432047 original size:158 final size:158
Alignment explanation
Indices: 1431538--1432038 Score: 376
Period size: 159 Copynumber: 3.2 Consensus size: 158
1431528 GCTGCATGAG
* * * *
1431538 ATTGATGCTTTGGTGTCACAAGAAA-AGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
1 ATTGATGCTTTGGTTTCACAGGAAATA-CTTTTCTTTCAACCATTTTTGATAGAATC-AAGATTA
* * * *
1431602 TATCTTAAATAAGACAAACATGAATAGTAATACTAATCCCCATTTTTTTCAGGATTAGGCACCAT
64 TCTCTTAAATAAGACAAACATGAATAATAATACTAATCCCCATTCTTTTCAGGATTAGGAACCAT
1431667 AAACATAGTCTTCTCATAAGGATACACGAT
129 AAACATAGTCTTCTCATAAGGATACACGAT
** ** ** * *** * *
1431697 ATTGATAATTTTCTTTTGCATGAAAATA-TTTTCTTTGC--CCTATTTTCCTTATAATCAAAATT
1 ATTGATGCTTTGGTTTCACA-GGAAATACTTTTCTTT-CAACC-ATTTTTGATAGAATCAAGATT
* * * ** ** * * * *
1431759 CATCCCTTAAATATGACAAGCATCG-ATTCTTGTAAC-AGTCTCAATTC-TTTCAGGATTGGGAA
63 -ATCTCTTAAATAAGACAAACAT-GAATAATAAT-ACTAATCCCCATTCTTTTCAGGATTAGGAA
* * *** * ** * *
1431821 CTAAGAATACATTCCCTT-T-ATTACAATACATGAC
125 C-CATAA-ACATAGTCTTCTCATAAGGATACACGAT
* * * *
1431855 AATGTTGCTTTGATCTTGCA-A-GAAATACTTTTCTTTCAACCATTTTTGATAGAATCTAAGCTT
1 ATTGATGCTTTGGT-TT-CACAGGAAATACTTTTCTTTCAACCATTTTTGATAGAATC-AAGATT
* *
1431918 ATCTCTTTAATAAGACAAACATGAATAATCATACTAATCCCCATTCTTTTCAGGATTAGGAACCA
63 ATCTCTTAAATAAGACAAACATGAATAATAATACTAATCCCCATTCTTTTCAGGATTAGGAACCA
*
1431983 TAAACCTAGTCTTCTCATAAGGATACACGAT
128 TAAACATAGTCTTCTCATAAGGATACACGAT
1432014 ATTGATGCTTTGGTTTCACAGGAAA
1 ATTGATGCTTTGGTTTCACAGGAAA
1432039 GGCTTTCTTC
Statistics
Matches: 239, Mismatches: 81, Indels: 44
0.66 0.22 0.12
Matches are distributed among these distances:
157 17 0.07
158 94 0.39
159 113 0.47
160 14 0.06
161 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (158 bp):
ATTGATGCTTTGGTTTCACAGGAAATACTTTTCTTTCAACCATTTTTGATAGAATCAAGATTATC
TCTTAAATAAGACAAACATGAATAATAATACTAATCCCCATTCTTTTCAGGATTAGGAACCATAA
ACATAGTCTTCTCATAAGGATACACGAT
Found at i:1432811 original size:476 final size:475
Alignment explanation
Indices: 1431654--1433925 Score: 2744
Period size: 476 Copynumber: 4.8 Consensus size: 475
1431644 TTTTTTTCAG
* * * * * * *
1431654 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATAATTTTCTTTTGCAT-
1 GATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG
* *
1431718 GAAAATATTTTCTTTGCCCTATTTTCCTTATAATCAAAATTCATCC-CTTAAATATGACAAGCAT
66 GAAAA-ATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCA-CCTCTTAAATTTGACAAGCAT
* * * * * * * *
1431782 CGATTCTTGTAACAGTCTCAATTC-TTTCAGGATTGGGAACTAAGAATACATTCCCTTTATTACA
129 CGATTCTCGAAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCATTACG
* * * *
1431846 ATACATGACAATGTTGCTTTGATCTTGCAAGAAATACTTTTCTTTCAACCATTTTTGATAGAATC
194 ATACATGACATTGTTGCTTTGGTCTCGCAAGAAA-ACTTTTCTTTCAACCGTTTTTGATAGAATC
* * * *
1431911 TAAGCTTATCTCTTTAATAAGACAAACATGAATAATCATACTAATCCCCATTCTTTTCAGGATTA
258 AAAGTTTATCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTTCAGGATTA
* * * *
1431976 GGAACCATAAACCTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAGGAAAGG
323 GGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG
** *
1432041 CTTTCTTCCCACCAATTTTTATAATGTCTATAAGTTTGTGCCTCAAATGAGGCAAACATGGATTC
388 CTTTCTTCCCACCAATTTTTATAATGTC--TAAGTTCATGCCTCAAATGAGACAAACATGGATTC
*
1432106 TAGTAAAGATCTTCATTCATTTTGT
451 TAGTAAAAATCTTCATTCATTTTGT
* * * *
1432131 GATTAGGCACTATAAGCACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGTATG
1 GATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG
** * ** * *
1432196 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCC-CTTAAATAAGGCAAGCATT
66 GAAAAATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCA-CCTCTTAAATTTGACAAGCATC
* * * * * *
1432260 GAGTCTTGTAA-TAGTCCCCATTCATTTCAGGATTGGGAACCAAGAATACATTCCCTTCATTACG
130 GATTCTCGAAACT-GTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCATTACG
* * *
1432324 ATGCATGACATTGTTGCTTTGGTATCGCAAGAAAAGCTTTTGTTTCAACCGTTTTTGATAGAATC
194 ATACATGACATTGTTGCTTTGGTCTCGCAAGAAAA-CTTTTCTTTCAACCGTTTTTGATAGAATC
* *
1432389 AAAGTTTATCT-TTTAAATAAGACGAACATGAATAGTCATATTAATCCCCATTTTTTTCAGGATT
258 AAAGTTTATCTCTTT-AATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTTCAGGATT
* * * * *
1432453 AGGCACCAAAAACGTAGTCTTCTCATAAAGATAAACGATATTGATGCTTTGGTTTTGCAAGAAAG
322 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAG
* * *
1432518 GCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTTAAATGAGACAATCATGGATTCT
387 GCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT
*
1432583 AGTAATAAAT-TTTATTCATTTTGT
452 AGTAA-AAATCTTCATTCATTTTGT
* * * * * *
1432607 GATTAGGTACAAAAAACATATTCTCCTCATAAGGATAAATGATATTGATGACTTTCTTTTGCAAG
1 GATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * *
1432672 AAAAAATTCTCTTTACCCTATTTTCTTTAAAATCAAAATTCACCTCTTAAATTTGACAAGCATCG
66 GAAAAATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCTCTTAAATTTGACAAGCATCG
*
1432737 ATTCTCGAAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCGTTACGAT
131 ATTCTCGAAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCATTACGAT
* * *
1432802 ACATGACATTGTTTCTTTGGTCTCGCAAGAAAACCTTTTCTTTCAATCGTTTTTGATAGAATCCA
196 ACATGACATTGTTGCTTTGGTCTCGCAAGAAAA-CTTTTCTTTCAACCGTTTTTGATAGAATCAA
* * *
1432867 AGTTTATCTCATTAATAAGACAAACTTGAATAGTCATACTAATCCCCATTCTTGTT-AGGATTAG
260 AGTTTATCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATT-TTTTTCAGGATTAG
* * * * ** *
1432931 GCACTATAAACATCGTCTTCTCATAATGATACATGATATTGATGCTTTGGCATCGCAAAAAAGGC
324 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * *
1432996 TTTTTTCCCACAAATTTTTATAATATCTAAGTTCATGCCTCAAATGAGACAAACATGGATT-TCA
389 TTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT-A
* * *
1433060 CTAAAGATCGAT-ATTCATTTTGT
453 GTAAAAATC-TTCATTCATTTTGT
* * * *
1433083 GATTAGGCACTATAAACAAATTCTCTTCATAAGGATGAATGATATTGATGATTTTCTTTTGCAAG
1 GATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * *
1433148 GAAAAATTTTCTTTGCCCTATTTTCTTTAAAATAAAAATTCACCTTTTAAATTTGACAAGCATCG
66 GAAAAATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCTCTTAAATTTGACAAGCATCG
* * * * *
1433213 ATTCTCAAAACTGTCTCCATTCTTTTCAAGATTAGGAACTAGGAATACATTCCCTTCATTATGAT
131 ATTCTCGAAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCATTACGAT
* * * *
1433278 ACATGACATTGTTGCTTTCGTCTTGCAAGAAAACTTTTTCTTTCAACTGTTTTTGATAAAATCAA
196 ACATGACATTGTTGCTTTGGTCTCGCAAGAAAAC-TTTTCTTTCAACCGTTTTTGATAGAATCAA
** * * * * * *
1433343 AGTTTATCTCTTTAATAAGACAAATGTAAATAGTCATACTAATCTCTATTCTTTTCAAGATTAAG
260 AGTTTATCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTTCAGGATTAGG
* * ** *
1433408 CACCATAAACATAGTCTTCTCATAAGGATACACTATATTAACACTTTGGTTTTGCAAGAAAGGCT
325 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1433473 TTCTT-GCACCAATTTTTATAATGTCTAAGTTCATGCCTTAAATGAGACAAACATCGATTCTAGC
390 TTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
**
1433537 AGTAATCTTCATTCATTTTGT
455 AAAAATCTTCATTCATTTTGT
* * * *
1433558 GATTAGGTACTATAAACACATTCTCCTTATTAGGATAAATTATATTGATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG
** * * * *
1433623 GAAACGTTTCCTTTGCCCTTTTTTCCTTAAAATCAAAGTTCA-TTCCTTAAATAATT-AGCAAGC
66 GAAAAATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCT-CTTAAAT--TTGA-CAAGC
* * * * * * ** **
1433686 ATTGATACTC-ATAA-TAGTCTCCACTCTTTTCATGATTAGGAACCAAAAAGGCATTCCCTTCGC
127 ATCGATTCTCGA-AACT-GTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCAT
* * * * * *
1433749 TAGGATACGTGACATTGATGCTTTGATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
190 TACGATACATGACATTGTTGCTTTGGTCTCGCAAGAAAA-CTTTTCTTTCAACCGTTTTTGATAG
* ** * * *
1433814 AATCTAAGTTTGCCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCA--TTCTTCAGG
254 AATCAAAGTTTATCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTTCAGG
* *
1433877 ATTAGGCACCATAAACATGGTCTTC-CTATAAGGATACACAATATTGATG
319 ATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGATG
1433926 ATTTTCTTTT
Statistics
Matches: 1544, Mismatches: 226, Indels: 52
0.85 0.12 0.03
Matches are distributed among these distances:
474 3 0.00
475 220 0.14
476 790 0.51
477 293 0.19
478 238 0.15
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
GATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG
GAAAAATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCTCTTAAATTTGACAAGCATCG
ATTCTCGAAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCATTACGAT
ACATGACATTGTTGCTTTGGTCTCGCAAGAAAACTTTTCTTTCAACCGTTTTTGATAGAATCAAA
GTTTATCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTTCAGGATTAGGC
ACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
TCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
AAAATCTTCATTCATTTTGT
Found at i:1432822 original size:795 final size:790
Alignment explanation
Indices: 1430957--1432777 Score: 1988
Period size: 795 Copynumber: 2.3 Consensus size: 790
1430947 GTTTCCATAA
* ** * * * * *
1430957 AATCAAAATTCATCCCTTAAATAAGGTAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCTGG
1 AATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAAAAATCTCAATTC-TTTCAGG
* * * * * * * *** * * *
1431022 ATTGGGAACCAAGAATATATTCCCTTTATTACGAA-GCCTGACATTGTTGCTTTTG-TCTCGCAA
65 ATTAGGAACAAAAAACACATTCCCTTCATAAC-AATAAATGACAATGATGC-TTTGATCTTGCAA
** * * * * * ** * *
1431085 GAAAAGCTTTTCTTTTAACCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGATAAGCAT
128 GAAAAAATTCTCTTTCAACCATTTTTGATAAAATCTAAA-ATTACCTCTTAAATAAGACAAACAT
* ** * * *
1431149 GAATAGTCATTCAAATCTCCATTCTTTTCAAGATTAGGCAA-CGT-AAACATAG-CCTTCTCATA
192 GAATAATCAAACTAATCCCCATTCTTTTCAAGATTAGG-AACCATAAAAC-TAGTCC-TCTCATA
* * * **
1431211 AGGATACACGATATTGATGGTTTGGTTTCACAAGAAAGGCTTTCTTCCCAGTAATTTTTATAATG
254 ACGATACACGACATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATG
*
1431276 TTTAACTTCGTGCCTCAAATGAGGTAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGAT
319 TTTAACTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGAT
*
1431341 TAGGCACTATAAACACATTCTACTTATTAGGGTAAATGATATTGATGATTTTTTTTGCATGGAAA
384 TAGGCACTATAAACACATTCTACTCATTAGGGTAAATGATATTGATGATTTTTTTTGCATGGAAA
* *
1431406 TCTTTTCTTTGCTATAGTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTC
449 TCTTTTCTTTGCCATAGTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGAGTC
* * * *
1431471 TCATAATAGTCTCCATTCTTTTCAGGATTGAGAACAAGAACACATTCCCTTCATTAGGCTGCATG
514 TCATAATAGTCCCCATTCATTTCAGGATTGAGAACAAGAACACATTCCCTTCATTACGATGCATG
* *
1431536 AGATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTT
579 ACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTT
*
1431601 GTATCTTAAATAAGACAAACATGAATAGTAATACTAATCCCCATTTTTTTCAGGATTAGGCACCA
644 ATATCTTAAATAAGACAAACATGAATAGTAATACTAATCCCCATTTTTTTCAGGATTAGGCACCA
* * * * * * *
1431666 TAAACATAGTCTTCTCATAAGGATACACGATATTGATAATTTTCTTTTGCATGAAAATATTTTCT
709 AAAACATAGTCTTCTCATAAAGATAAACGATATTGATAATTTGCTTTTGCAAGAAAAGACTTTCT
* * *
1431731 TTGCCCTATTTTCCTTAT
774 TTCCCCCAATTT-CTTAT
* * *
1431749 AATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTTGTAACAGTCTCAATTCTTTCAGGA
1 AATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAAAAATCTCAATTCTTTCAGGA
* * * * * * * *
1431814 TTGGGAACTAAGAATACATTCCCTTTATTACAATACATGACAATGTTGCTTTGATCTTGCAAGAA
66 TTAGGAACAAAAAACACATTCCCTTCATAACAATAAATGACAATGATGCTTTGATCTTGCAAGAA
* * * * ** * *
1431879 ATACTTTTCTTTCAACCATTTTTGATAGAATCTAAGCTTATCTCTTTAATAAGACAAACATGAAT
131 AAAATTCTCTTTCAACCATTTTTGATAAAATCTAAAATTACCTCTTAAATAAGACAAACATGAAT
* * * * *
1431944 AATCATACTAATCCCCATTCTTTTCAGGATTAGGAACCATAAACCTAGTCTTCTCATAAGGATAC
196 AATCAAACTAATCCCCATTCTTTTCAAGATTAGGAACCATAAAACTAGTCCTCTCATAACGATAC
* *
1432009 ACGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTATAA
261 ACGACATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGT-T-TAA
* *
1432074 GTTTGTGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGC
324 CTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGC
* * *
1432139 ACTATAAGCACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGTATGGAAATCTT
389 ACTATAAACACATTCTACTCATTAGGGTAAATGATATTGATGATTTT-TTTTGCATGGAAATCTT
* * * **
1432204 TTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAAATAAGGCAAGCATTGAGTCTTGT
453 TTCTTTGCCATAGTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGAGTCTCAT
* *
1432269 AATAGTCCCCATTCATTTCAGGATTGGGAACCAAGAATACATTCCCTTCATTACGATGCATGACA
518 AATAGTCCCCATTCATTTCAGGATTGAGAA-CAAGAACACATTCCCTTCATTACGATGCATGACA
* * * * *
1432334 TTGTTGCTTTGGTATCGCAAGAAAAGCTTTTGTTTCAACCGTTTTTGATAGAATCAAAGTTTATC
582 TTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTATA
* * * *
1432399 TTTTAAATAAGACGAACATGAATAGTCATATTAATCCCCATTTTTTTCAGGATTAGGCACCAAAA
647 TCTTAAATAAGACAAACATGAATAGTAATACTAATCCCCATTTTTTTCAGGATTAGGCACCAAAA
* ** * *
1432464 ACGTAGTCTTCTCATAAAGATAAACGATATTGATGCTTTGGTTTTGCAAG-AAAGGCTTTC-TTC
712 ACATAGTCTTCTCATAAAGATAAACGATATTGATAATTTGCTTTTGCAAGAAAAGACTTTCTTTC
1432527 CCACCAATTT-TTAT
777 CC-CCAATTTCTTAT
* * * * * * **
1432541 AATGTCTAAGTTCGTGCCTTAAATGA-GACAATCATGGATTCTAGTAATAAAT-TTTATTCATTT
1 AA--TCAAAATTCATCCCTTAAAT-ATGACAAGCATCGATTCTAGTAA-AAATCTCAATTC-TTT
* * * ** * * * *
1432604 -TGTGATTAGGTACAAAAAACATATTCTCC-TCATAAGGATAAATGATATTGATGACTTT-CTTT
61 CAG-GATTAGGAACAAAAAACACATTC-CCTTCATAACAATAAATGACAATGATG-CTTTGATCT
* * **
1432666 TGCAAGAAAAAATTCTCTTT-ACCCTATTTTCT-TTAAAATC-AAAATTCACCTCTTAAATTTGA
123 TGCAAGAAAAAATTCTCTTTCAACC-ATTTT-TGATAAAATCTAAAATT-ACCTCTTAAATAAGA
* ** * * *
1432728 CAAGCATCG-ATTCTCGAAACT-GTCTCCATTCTTTTCAAGATTGGGAACCA
185 CAAACAT-GAATAATC-AAACTAATCCCCATTCTTTTCAAGATTAGGAACCA
1432778 AGAATACATT
Statistics
Matches: 874, Mismatches: 131, Indels: 45
0.83 0.12 0.04
Matches are distributed among these distances:
790 8 0.01
791 213 0.24
792 63 0.07
793 113 0.13
794 160 0.18
795 305 0.35
796 12 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (790 bp):
AATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAAAAATCTCAATTCTTTCAGGA
TTAGGAACAAAAAACACATTCCCTTCATAACAATAAATGACAATGATGCTTTGATCTTGCAAGAA
AAAATTCTCTTTCAACCATTTTTGATAAAATCTAAAATTACCTCTTAAATAAGACAAACATGAAT
AATCAAACTAATCCCCATTCTTTTCAAGATTAGGAACCATAAAACTAGTCCTCTCATAACGATAC
ACGACATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTTTAACT
TCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTCTACTCATTAGGGTAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTC
TTTGCCATAGTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGAGTCTCATAAT
AGTCCCCATTCATTTCAGGATTGAGAACAAGAACACATTCCCTTCATTACGATGCATGACATTGA
TGCTTTGGTATCACAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTATATCTT
AAATAAGACAAACATGAATAGTAATACTAATCCCCATTTTTTTCAGGATTAGGCACCAAAAACAT
AGTCTTCTCATAAAGATAAACGATATTGATAATTTGCTTTTGCAAGAAAAGACTTTCTTTCCCCC
AATTTCTTAT
Found at i:1434162 original size:316 final size:319
Alignment explanation
Indices: 1433599--1434233 Score: 789
Period size: 316 Copynumber: 2.0 Consensus size: 319
1433589 AGGATAAATT
* * *
1433599 ATATTGATGATTTTCTTTTGCATGGAAACGTTTCCTTTGCCCTTTTTTCCTTAAAATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGGAAACATTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTC
* * * **
1433664 ATTCCTTAAATAATTAGCAAGCATTGATACTCATAATAGTCTCCACTCTTTTCATGATTAGGAAC
66 ATCCCTTAAATAATGAGCAAACATCAATACTCATAATAGTCTCCACTCTTTTCATGATTAGGAAC
* * * * * *
1433729 CAAAAAGGCATTCCCTTCGCTAGGATACGTGACATTGATGCTTTGATGTCACAAGAAAAGCTTTT
131 CAAAAAGGCATTCCCTTCACTACGATACATGACACTGATGCTTTGATCTCACAAGAAAACCTTTT
* * * *
1433794 CTTTCAACCGTTTTTGATAGAATCTAAGTTTGCCTCTTAAATAAGACAAACATAAATAGTCATAC
196 CTTTCAAACGTTTTTGACAGAATCCAAGTTTACCTCTTAAATAAGACAAACATAAATAGTCATAC
* *
1433859 TAATCCCCATTC-TTCAGGATTAGGCACCATAAACATGGTCTTC-CTATAAGGATACACA
261 TAATCCCCATTCTTTCAGGAATAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACA
* *
1433917 ATATTGATGATTTTCTTTTTCATGGAAATATTT-CTGTTGCCCTATTTTCCTTAAAATCAAAATT
1 ATATTGATGATTTTCTTTTGCATGGAAACATTTCCT-TTGCCCTATTTTCCTTAAAATCAAAATT
* * ** * * *
1433981 CATCCCTTAAAT-ATGA-CAAACGTCAATTCTTGTGACT-GTCTCCATTCTTTTCA-GCATTGGG
65 CATCCCTTAAATAATGAGCAAACATCAATACTCAT-AATAGTCTCCACTCTTTTCATG-ATTAGG
* * * * * *
1434042 AACCAAGAATGCATTCCCTTCATTACGATACATGACACTGTTGCTTTGGTCTCGCAAGAAAACCT
128 AACCAAAAAGGCATTCCCTTCACTACGATACATGACACTGATGCTTTGATCTCACAAGAAAACCT
* * * * *
1434107 TTTCTTTCAAACGTTTTTTACAGAATCCAAGTTTATCTCTTTAATAAGGCAAACATGAATAGTCA
193 TTTCTTTCAAACGTTTTTGACAGAATCCAAGTTTACCTCTTAAATAAGACAAACATAAATAGTCA
** *
1434172 TACTAATCCTTATTCTTTTTAGGAATAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
258 TACTAATCCCCATTC-TTTCAGGAATAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
1434234 GATACTAAAG
Statistics
Matches: 268, Mismatches: 43, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 152 0.57
317 7 0.03
318 107 0.40
319 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (319 bp):
ATATTGATGATTTTCTTTTGCATGGAAACATTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTC
ATCCCTTAAATAATGAGCAAACATCAATACTCATAATAGTCTCCACTCTTTTCATGATTAGGAAC
CAAAAAGGCATTCCCTTCACTACGATACATGACACTGATGCTTTGATCTCACAAGAAAACCTTTT
CTTTCAAACGTTTTTGACAGAATCCAAGTTTACCTCTTAAATAAGACAAACATAAATAGTCATAC
TAATCCCCATTCTTTCAGGAATAGGCACCATAAACATAGTCTTCTCATAAGGATACACA
Found at i:1436340 original size:778 final size:781
Alignment explanation
Indices: 1434809--1436386 Score: 2258
Period size: 778 Copynumber: 2.0 Consensus size: 781
1434799 AGGATAAATA
** **
1434809 ATATTGATGATTTTTTTTGCAAGGAAAAATTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCA
1 ATATTGATGATTTTTTTTGCAAGGAAAAATTTTCGCTGCCCTATTTTCCATAAAATCAAAATTCA
*
1434874 CCTCTTAAATTTGACAAGCATCGATTCTTAAAACTGTCTCCATTCTTTTCAAGATTAGGAACCAA
66 CCTCTTAAATATGACAAGCATCGATTCTTAAAACTGTCTCCATTCTTTTCAAGATTAGGAACCAA
*
1434939 GAATACATTCCCTTCACTACGATACATGACAGTGTCGCTTTGGTCTTGTAACAAAACCTTTTCTT
131 GAATACATTCCCTTCACTACGATACATGACAGTGTCGCTTTGGTCTCG--ACAAAA---------
*
1435004 TCGACAATTTTTGATAGAATCAAAGTTTATCTATTTAATAAGACAAATGTGAATAGTCATACTAA
185 TCG---ATTTTTGATAGAATCAAAGTTTATCTATGTAATAAGACAAATGTGAATAGTCATACTAA
* *
1435069 TCTCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAC
247 TCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGAC
*
1435134 ACTTTGGTTTTGCAAGAAAGGCTTTCTTGCCACCAATTTTTATAATGCCTAAGTTCGTGCCTTAA
312 ACTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGCCTAAGTTCGTGCCTTAA
* * * *
1435199 ATGAGACAAACATCTATTCTAGCAATAATCTTCATTCATTTTGTGATTAGGTACTATAAACACAT
377 ATGAGACAAACATCGATTCTAGCAATAATCTTCATTCATTTTGCGATTAGGTACAACAAACACAT
* * * *
1435264 TCTCTTTATTAGGATAAATTATATTGATGATTTTCTTTTGCATGGAAACGTTTCCTTTGCCCTTT
442 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAACGTTTCCTTTGCCCTTT
* * * *
1435329 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAATTAGGAAGCATTGATTCTCATAATAGTCTCTA
507 TTTCCTTAAAATCAAAGTTCATCCCTTAAACAATTAGCAAGCATTGATTCTCATAACAGTCTCCA
* * *
1435394 TTCTTTTCAGGATTGGAAACCAAGAACACATTCCCTTCATTAGGATACATGAGATTGATGCTTTG
572 TTCTTTTCAGGATTGGAAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTG
* * *
1435459 GTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
637 ATGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGATTGTCTCTCAAATAAG
* * *
1435524 ACAAACATAAATAGTCATACTAGTCCCCATTATTTTCAGGATTAGGCACCATAAATATAGTCTTC
702 ACAAACATAAATAGTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATAGTCTGC
1435589 CCACAAGGATACACG
767 CCACAAGGATACACG
* * *
1435604 ATATTGATGATTTTCTTTTGCATGGAAATATTTTCGCTGCCCTATTTTCCATATAATCAAAATTC
1 ATATTGATGATTTT-TTTTGCAAGGAAAAATTTTCGCTGCCCTATTTTCCATAAAATCAAAATTC
* *** *
1435669 ATCC-CTTAAATATGACAAGCATTGATTCTTGTTACTGTCTCCATTCTTTTCAAGATTGGGAACC
65 A-CCTCTTAAATATGACAAGCATCGATTCTTAAAACTGTCTCCATTCTTTTCAAGATTAGGAACC
* * * * *
1435733 AAGAATATATTCCTTTCATTACGATACATGACATTGTTGCTTTGGTCTCG-C-AAA-CG-TTTTT
129 AAGAATACATTCCCTTCACTACGATACATGACAGTGTCGCTTTGGTCTCGACAAAATCGATTTTT
* *
1435794 GATAGAATCCAAGTTTATCTCTGTAATAAGACAAACT-TGAATAGTCATACTAATCCCTATTCTT
194 GATAGAATCAAAGTTTATCTATGTAATAAGACAAA-TGTGAATAGTCATACTAATCCCTATTCTT
*** * **
1435858 TTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATACTGATGCTTTGGTTTT
258 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGACACTTTGGTTTT
* *
1435923 GCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTTAAATGAGACAATC
323 GCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGCCTAAGTTCGTGCCTTAAATGAGACAAAC
* * *
1435988 ATGGATTCTAGTAATGAA-CTTTATTCATTTTGCGATTAGGTACAACAAACACATTCTCCTCATT
388 ATCGATTCTAGCAAT-AATCTTCATTCATTTTGCGATTAGGTACAACAAACACATTCTCCTCATT
*
1436052 AGGATAAATGATATTGATGA-TTTCTTTTTGCATAGAAATGTTTCCTTTGCCCTTTTTTCCTTAA
452 AGGATAAATGATATTGATGATTTTC-TTTTGCATAGAAACGTTTCCTTTGCCCTTTTTTCCTTAA
*
1436116 AATCAAAGTTCATCCCTTAAACAATTAGCAAGCGTTGATTC-CTATAACAGTCTCCATTCTTTTC
516 AATCAAAGTTCATCCCTTAAACAATTAGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTC
* *
1436180 ATGATTAGG-AACCAAAAACACATTCCTTTCATTAGAATACATGACATTGATGCTTTGATGTCAC
580 AGGATT-GGAAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGATGTCAC
* *
1436244 AGGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGATTGTCTCTCAAATAAGACACACA
644 AAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGATTGTCTCTCAAATAAGACAAACA
* * * * * * * *
1436309 TTAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACTATAAACATTGTCTGCTCATAAT
709 TAAATAGTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATAGTCTGCCCACAAG
1436374 GATACACG
774 GATACACG
1436382 ATATT
1 ATATT
1436387 AATGCTTTGG
Statistics
Matches: 705, Mismatches: 71, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
777 5 0.01
778 531 0.75
779 5 0.01
782 2 0.00
792 3 0.00
793 1 0.00
795 14 0.02
796 142 0.20
797 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (781 bp):
ATATTGATGATTTTTTTTGCAAGGAAAAATTTTCGCTGCCCTATTTTCCATAAAATCAAAATTCA
CCTCTTAAATATGACAAGCATCGATTCTTAAAACTGTCTCCATTCTTTTCAAGATTAGGAACCAA
GAATACATTCCCTTCACTACGATACATGACAGTGTCGCTTTGGTCTCGACAAAATCGATTTTTGA
TAGAATCAAAGTTTATCTATGTAATAAGACAAATGTGAATAGTCATACTAATCCCTATTCTTTTC
AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGACACTTTGGTTTTGCA
AGAAAGGCTTTCTTCCCACCAATTTTTATAATGCCTAAGTTCGTGCCTTAAATGAGACAAACATC
GATTCTAGCAATAATCTTCATTCATTTTGCGATTAGGTACAACAAACACATTCTCCTCATTAGGA
TAAATGATATTGATGATTTTCTTTTGCATAGAAACGTTTCCTTTGCCCTTTTTTCCTTAAAATCA
AAGTTCATCCCTTAAACAATTAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAGGATT
GGAAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGATGTCACAAGAAAA
GCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGATTGTCTCTCAAATAAGACAAACATAAATAG
TCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATAGTCTGCCCACAAGGATACAC
G
Found at i:1436847 original size:475 final size:471
Alignment explanation
Indices: 1435787--1437346 Score: 1886
Period size: 475 Copynumber: 3.3 Consensus size: 471
1435777 GTCTCGCAAA
* *
1435787 CGTTTTTGATAGAATCCAAGTTTATCTCTGT-AATAAGACAAACTTGAATAGTCATACTAATCCC
1 CGTTTTTGATAGAATCAAAATTTATCTCT-TAAATAAGACAAA-TTGAATAGTCATACTAATCCC
** * *
1435851 TATTCTTTTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATACTGATGCTT
64 TATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
*
1435916 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTTAAATGA
129 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTTAAATGA
* ** * * * *
1435981 GACAATCATGGATTCTAGTAATGAACTTTATTCATTTTGCGATTAGGTACAACAAACACATTCTC
194 GACAAACATGGATTC-AACAATG-ATTTTATTCATTTTGTGATTAGGTACTATAAACACATTCTC
** *
1436046 CTCATTAGGATAAATGATATTGATGA-TTTCTTTTTGCATAGAAATGTTTCCTTTGCCCTTTTTT
257 CTCATTAGGATAAATGATATTGATGATTTTC-TTTTGCA-AGAAAAATTTTCTTTGCCCTTTTTT
*
1436110 CCTTAAAATCAAAGTTCATCCCTTAAACAATTAGCAAGCGTTGATTC-CTATAACAGTCTCCATT
320 CCTTAAAATCAAAGTTCATCCCTT-AA-ATTTAGCAAGCGTTGATTCTC-ATAACAGTCTCCATT
*
1436174 CTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGAATACATGACATTGATGCTTTGAT
382 CTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAG-ATACATGACATTGATGCTTTGAT
*
1436239 GTCACAGGAAAAGCTTTTCTTTCAAC
446 GTCACAAGAAAAGCTTTTCTTTCAAC
* *
1436265 CGTTTTTGATAGAATCAAAGA-TTGTCTCTCAAATAAGACACACATT-AATAGTCATACTAATCC
1 CGTTTTTGATAGAATCAAA-ATTTATCTCTTAAATAAGACA-A-ATTGAATAGTCATACTAATCC
* * * * *
1436328 CTATTCTTTTCAGGATTAGGCACTATAAACATTGTCTGCTCATAATGATACACGATATTAATGCT
63 CTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * * *
1436393 TTGGATTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATATCTAAGTTCATGCCTCAAATG
128 TTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTTAAATG
* * *
1436458 AGACAAACATGGAATCAACAAATGATTGTTATTCATTTTTTGATTAGGCACTATAAACACATTCT
193 AGACAAACATGGATTCAAC-AATGATT-TTATTCATTTTGTGATTAGGTACTATAAACACATTCT
* * *
1436523 CCTCA-AAGGATAACTGATATTGATGATTTTCTTTTGCAAGGAAAAATTTTCTTTGCCCTATTTT
256 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAA-GAAAAATTTTCTTTGCCCTTTTTT
* * * * *
1436587 CTTTAAAATCAAAATTCA-CCTCTTAAATTT-GACAAGCATCGATTCTCGA-AACTGTCTCCATT
320 CCTTAAAATCAAAGTTCATCC-CTTAAATTTAG-CAAGCGTTGATTCTC-ATAACAGTCTCCATT
* * * * * *
1436649 CTTTTCAAGATTGGGAACTAAGAATACATTCCCTTCATTATGATACATGACATTGTTGCTTT-A-
382 CTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTA-GATACATGACATTGATGCTTTGAT
* *
1436712 GTCTTGCAAGAAAACCTTTTCTTTCAAC
446 GTC--ACAAGAAAAGCTTTTCTTTCAAC
* * * *
1436740 TGTTTTTGATAGAATCAAAATTTATCTCTTTAATAAGACAAATGTGAATAGTCATGCTAATCTCT
1 CGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAAT-TGAATAGTCATACTAATCCCT
* * ** *
1436805 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACACTTA
65 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * *
1436870 GGTTTTGCAAGAAAGGCTTTCTTGCCGCCAATTTTTGTAATGTCTAAGTTCACGCCTTAAATGAG
130 GGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTTAAATGAG
** * * *
1436935 ACAAACATCTATTCTAGCAATAATCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCC
195 ACAAACATGGATTC-AACAATGAT-TTTATTCATTTTGTGATTAGGTACTATAAACACATTCTCC
* * * * ** *
1437000 TTTATTA-GATAAATTATATTGATGATTTTTTTTTTTTGCACGAAAACGTTTCTTTTGCCTTTTT
258 -TCATTAGGATAAATGATATTGATGA---TTTTCTTTTGCAAGAAAAATTTTC-TTTGCCCTTTT
* *
1437064 TTCCCTAAAATCAAAGTTCATCCCTTAAATAATTAGCTAGCGTTGATTCTCATAACAGTCTCCAT
318 TTCCTTAAAATCAAAGTTCATCCCTTAAAT--TTAGCAAGCGTTGATTCTCATAACAGTCTCCAT
* * **
1437129 TCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCACTAAGATACATTACAGCGATGCTTTGA
381 TCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCA-TTAGATACATGACATTGATGCTTTGA
1437194 TGTCACAAGAAAAGCTTTTCTTTCAAC
445 TGTCACAAGAAAAGCTTTTCTTTCAAC
* * **
1437221 CATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATT-AATAGTCATACTAATCCC
1 CGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGAC-AA-ATTGAATAGTCATACTAATCCC
* * * * * *
1437285 CATTCTTTTCTGGACTAGGCACCATAAACATAGTCTTCCCATAAAGATACATGATATTGATG
64 TATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
1437347 ATTTTCTTTT
Statistics
Matches: 917, Mismatches: 130, Indels: 67
0.82 0.12 0.06
Matches are distributed among these distances:
473 5 0.01
474 5 0.01
475 313 0.34
476 29 0.03
477 69 0.08
478 234 0.26
479 47 0.05
480 4 0.00
481 199 0.22
482 7 0.01
483 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (471 bp):
CGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAATTGAATAGTCATACTAATCCCTA
TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
GTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTTAAATGAGA
CAAACATGGATTCAACAATGATTTTATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTCA
TTAGGATAAATGATATTGATGATTTTCTTTTGCAAGAAAAATTTTCTTTGCCCTTTTTTCCTTAA
AATCAAAGTTCATCCCTTAAATTTAGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATG
ATTAGGAACCAAAAACACATTCCCTTCATTAGATACATGACATTGATGCTTTGATGTCACAAGAA
AAGCTTTTCTTTCAAC
Found at i:1438151 original size:476 final size:474
Alignment explanation
Indices: 1437330--1440807 Score: 4245
Period size: 476 Copynumber: 7.3 Consensus size: 474
1437320 TTCCCATAAA
* ** * * * *
1437330 GATACATGATATTGATGATTTTCTTTTGTTTGCAAATATTTTCGTTGTCCTGTTTTCCTTATAAT
1 GATAAATGATATTGATGATTTTCTTTTGCATG-AAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * *
1437395 CAAAATTCATCCCTTAAATATGGCAAGTATTGATTTTTGTAACTGTCTCCATTCTTTT-TAGCAT
65 CAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAG-AT
* ** * * * **
1437459 TGGAAACCAAGAATGCATTCCCTTCATTACGAAACATGACATTGTTGCTTTGGTCTTGCAAGAAA
129 TGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAAA
* ** * * * * * *
1437524 AACTTTTCTTTTGACCGTTGTTGATAGAATCCAAGTTTATCTCTTTAACAAAACAAAGATGAATA
194 AGCTTTTCTTTCAACCGTTTTTGATAGAAT-CAAATTTGTCTCTTTAATAAGACAAAAATGAATA
* * *
1437589 GTCATACTAATCCCTATTCTTTTCAGGAATAGGCACCATAAACATAGTCTTCTCATAAAGATACG
258 GTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *
1437654 CGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCCAAG-T
323 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTT
* *
1437718 CTGTGCCTCAAATGAGGCAAACAT-GATTTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCAA
388 C-GTGCCTCAAATGAGACAAACATGGA-TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCTA
*
1437782 CTATAAATACATTCTCCTTATTAG
451 CTATAAACACATTCTCCTTATTAG
* * * ** * *
1437806 GGTGAATGATATTGATGATTTTCTTTTGTACAT-AAATCTTTTCTTTGCTATAGTTTCCATAAAA
1 GATAAATGATATTGATGATTTTCTTTTG--CATGAAATATTTTCTTTGCCCTATTTTCCTTAAAA
* *
1437870 TCGAAATTCATCCCTTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTCTTTTCAAGAT
64 TCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGAT
* * * * *
1437935 TGGGAACGAAGAACACATTCCTTTCATTAGGATACAAGAGATTGATGCTTTGGTGTCACAAGAAA
129 TGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAAA
*
1438000 AGCTTTTCTTTCAACCGTTTTTGATGGAATCATAATTTGTCTCTTTAATAAGACAAAAATGAATA
194 AGCTTTTCTTTCAACCGTTTTTGATAGAATCA-AATTTGTCTCTTTAATAAGACAAAAATGAATA
* * * *
1438065 GTCATACTAATCCCTATTCATTTCAAGATTAGGCACCACAAACATAGTCTTCTCAAAAGGATACA
258 GTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
** * * *
1438130 CGATATTGACACTTTGGTTTTGCAAGAAAGGCTCTCTTCCTACCAATTTTTATAATGTCTAAGTT
323 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTT
* * * ** * *
1438195 CGTGCCTCAAATGAGACAAACATGGATTCTACTAACGATCTTCATTCATTTTATGAAGAGATGCT
388 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCTACT
*
1438260 ATAAACACATTCTCCTCATTAG
453 ATAAACACATTCTCCTTATTAG
1438282 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATAAATGATATTGATGATTTTCTTTTGCATG-AAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * *
1438347 CATAATTCCTCCCTCAAATATA-ACAAGCATCGATTCTTGTAACTGTCTCCATTCTTTTC-AGCA
65 CAAAATTCATCCCTTAAATA-AGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAG-A
* ** * * * * *
1438410 TTGGGAACCTAGAATGCTTTCCCTTCATTACGATACACGACATTGTTGCTTTGGTCTCGCAAGAA
128 TTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAA
* * * * * **
1438475 AAACTTTTTTTTCAACCCTTTTTGAAAGAATCAAAGTTTATCTCTTTAATAAGACAAATGTGAAT
193 AAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAA-TTTGTCTCTTTAATAAGACAAAAATGAAT
* *
1438540 AGTCATACTAATCCTTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
257 AGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * ** *
1438605 ATGATATTGATACTTTGGTTTTGCAAGAAAGGCTTTGTAGCCACCAATTTGTATAATGTCTAAGT
322 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGT
* * * * * * *
1438670 TCGTGCCTTAATTGAGACAAAACATCGATTCTTGTAAAAAACTTCATTCATTTTGTGATTAGGTA
387 TCGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCTA
* *
1438735 CCATAAACACATTCTCCTTATTAT
451 CTATAAACACATTCTCCTTATTAG
* *
1438759 GATAAATTG-TATTGATGATTTTCTTTTGCATGGAAAT-GTTTCTTTTGCCCTTTTTTCCTTAAA
1 GATAAA-TGATATTGATGATTTTCTTTTGCAT-GAAATATTTTC-TTTGCCCTATTTTCCTTAAA
* * * * * * * * *
1438822 AACAAAGTTCATACCTTAAATAATTAGCAAGCATTGATTCTCGCAAGAGTATCCACTCTTTTCAT
63 ATCAAAATTCATCCCTTAAATAA--GGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAA
* * * ** * *
1438887 GATTAGGTACCAAAAACACATTCCCTTCATTAGGATACGCGACATTGATGCTTTGATGTCACAAG
126 GATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAG
* * * * ** *
1438952 AAAAGCATTTCTTTCAACAGTTTTTGATAGAATCCAAGTTTGTCTCTTAAATAAGACAAGCATAA
191 AAAAGCTTTTCTTTCAACCGTTTTTGATAGAAT-CAAATTTGTCTCTTTAATAAGACAAAAATGA
** *
1439017 ATAGTTGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
255 ATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* *
1439082 ACACGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAA
320 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA
* * * *
1439147 CTTCATGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAGGC
385 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTA-GC
*
1439212 -ACTATAAACACATTCTCCTCATTAG
449 TACTATAAACACATTCTCCTTATTAG
* * * *
1439237 GATAAATGATATTAATGATTTTCTTTTGTAAGGAAA-ATTTTTCTTTGCCCTATTTTCATTAAAA
1 GATAAATGATATTGATGATTTTCTTTTG-CATGAAATA-TTTTCTTTGCCCTATTTTCCTTAAAA
* * * * * *
1439301 TCAAAATTCA-CCTCTTAAATATGACAAGCATCGATTCTCGAAACTGTCTCCATTTTTTTCAAGA
64 TCAAAATTCATCC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGA
* * * * * **
1439365 TTAGAAACCAAGAATACATTCCCTTCATTACGATACATGACATTGTTGCTTTGGTCTTGCAAGAA
128 TTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAA
* * * * **
1439430 AACCTTTTTTTTCAACCCTTTTTGATAGAATCAAAGTTTATCTCTTTAATAAGACAAATGTGAAT
193 AAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAA-TTTGTCTCTTTAATAAGACAAAAATGAAT
* * * * * *
1439495 AGTCATTCAAATCCCGATTCTTTTCAAGATTAGGCATCATAAATATAGTCTTCTCATAAGGATAC
257 AGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* ** *
1439560 ACGATATTAACACTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTATAATGTCTAAGT
322 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGT
* * * * *
1439625 TCGTGCCTTAAATGAGACAAACATCGATTTTAGTAATA-ATCTTCATTCCTTTTGTGATTAGGTA
387 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA-AGATCTTCATTCATTTTGTGATTAGCTA
* * *
1439689 CTACAAAC-CTATTATTCTTATTAG
451 CTATAAACAC-ATTCTCCTTATTAG
* * * * * *
1439713 GATAAATTATTTTGATTATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTTTCCTTAAAAT
1 GATAAATGATATTGATGATTTTCTTTTGCAT-GAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
1439778 CAAAGTTCATCCCTTAAATAATTAGG-AAGCATTGATTCTCATAACAGTCTCTATTCTTTTCAGG
65 CAAAATTCATCCCTTAAAT-A--AGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAG
* *
1439842 ATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGAGATTGATGCTTTGGTATCACAAGA
127 ATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGA
* * *
1439907 AAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAA
192 AAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAA-TTTGTCTCTTTAATAAGACAAAAATGAA
* *
1439972 TAGTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
256 TAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
*
1440037 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCCTCCCACCAATTTTTATAATGTCTAAG
321 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAG
* *
1440102 TTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCCA
386 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCTA
*
1440167 CTATAAACACATTCTCTTTATTAG
451 CTATAAACACATTCTCCTTATTAG
* * * ** * *
1440191 GGTAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCTATAGTTTCCATAAAAT
1 GATAAATGATATTGATGATTTTCTTTTGCAT-GAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
1440256 CAAAATTCATCCCTTAAATAAGGCAAGCACTGATTCTCATAACAATCTCCATTCTTTTCAGGATT
65 CAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * * *
1440321 GGGAACCAAGAACACATTCCCTTCATTAGGATACAAGAGATTGAAGCTTTGGTGTCACAAGAAAA
130 GGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAAAA
* * *
1440386 GCTTTTCTTTCAACCGTTTTTGATGGAATCATAGTTTGTCTCTTTAATAAGACAAAAA-AAATAG
195 GCTTTTCTTTCAACCGTTTTTGATAGAATCA-AATTTGTCTCTTTAATAAGACAAAAATGAATAG
* * * * * *
1440450 TCATACTAGTCCCCT-TTCTTTTCAGGATTAGGCTCCACAAGCGTAGTCTTCTCATAAGTATACA
259 TCATACTAAT-CCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * *
1440514 GGATATTGACGCTTTGGTTTCACAAGAAAGGCTCTCTTCCCACCAATTTTTATAATGTCTAAGTT
323 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTT
* * * * * * *
1440579 TGTGACTTAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGTGCT
388 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCTACT
*
1440644 ATAAACACATTCTCCTCATTAG
453 ATAAACACATTCTCCTTATTAG
*
1440666 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCTCTATTTTCCTTAAAAT
1 GATAAATGATATTGATGATTTTCTTTTGCAT-GAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * *
1440731 CAAAATTCATCCCTTAAATATGACAAGCATCGATTCTTGCAACTGTCCCCATTCTTTTC-AGCAT
65 CAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAG-AT
*
1440795 TGGGAGCCAAGAA
129 TGGGAACCAAGAA
1440808 TGCATTCCTG
Statistics
Matches: 2561, Mismatches: 399, Indels: 85
0.84 0.13 0.03
Matches are distributed among these distances:
474 4 0.00
475 331 0.13
476 1282 0.50
477 140 0.05
478 533 0.21
479 267 0.10
480 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
GATAAATGATATTGATGATTTTCTTTTGCATGAAATATTTTCTTTGCCCTATTTTCCTTAAAATC
AAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAAAAG
CTTTTCTTTCAACCGTTTTTGATAGAATCAAATTTGTCTCTTTAATAAGACAAAAATGAATAGTC
ATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGT
GCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGCTACTATA
AACACATTCTCCTTATTAG
Found at i:1445837 original size:42 final size:42
Alignment explanation
Indices: 1445772--1445894 Score: 149
Period size: 42 Copynumber: 2.9 Consensus size: 42
1445762 TCACTCTTCC
* * **
1445772 ATCT-TCTTCTCTCCTCCTCCTATCATCCCTCCTCTCTCTATT
1 ATCTCTCTTATCT-CTCCTCCTATCATCCCTCCTATCTCTACA
*
1445814 ATCTCTCTTATCTCTCCTCCTATCATCCCTCCTATCTTTACA
1 ATCTCTCTTATCTCTCCTCCTATCATCCCTCCTATCTCTACA
* * * *
1445856 ATCTCTCCTATCTTTCATCCTCTCATCCCTCCTATCTCT
1 ATCTCTCTTATCTCTCCTCCTATCATCCCTCCTATCTCT
1445895 TCTTTCTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 63 0.90
43 7 0.10
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (42 bp):
ATCTCTCTTATCTCTCCTCCTATCATCCCTCCTATCTCTACA
Found at i:1460134 original size:3 final size:3
Alignment explanation
Indices: 1460126--1460151 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1460116 AACCTCTTTC
1460126 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
1460152 GCTTTGAACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:1461801 original size:20 final size:20
Alignment explanation
Indices: 1461778--1461851 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 20
1461768 TAATTCATGG
1461778 TGTATCAATACTTAGCAATT
1 TGTATCAATACTTAGCAATT
* * *
1461798 TGTATCGATACATCTAG--GTG
1 TGTATCAATAC-T-TAGCAATT
*
1461818 CGTATCGATATACTTAGCAATT
1 TGTATC-A-ATACTTAGCAATT
1461840 TGTATCAATACT
1 TGTATCAATACT
1461852 AATAGTAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 24 0.60
21 3 0.08
22 13 0.32
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (20 bp):
TGTATCAATACTTAGCAATT
Found at i:1462657 original size:10 final size:10
Alignment explanation
Indices: 1462608--1462666 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 10
1462598 AGTTTTCCAA
1462608 TTTTCTCTCT
1 TTTTCTCTCT
*
1462618 ATTTTCTTTCCT
1 -TTTTCTCT-CT
*
1462630 TTTTCTTTCTTT
1 TTTTC--TCTCT
1462642 TCTTTCTCTCT
1 T-TTTCTCTCT
1462653 TTTTCTCTCT
1 TTTTCTCTCT
1462663 TTTT
1 TTTT
1462667 TTTTTCAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
10 13 0.32
11 17 0.43
12 4 0.10
13 6 0.15
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTCTCTCT
Found at i:1463400 original size:165 final size:167
Alignment explanation
Indices: 1463159--1463548 Score: 405
Period size: 165 Copynumber: 2.3 Consensus size: 167
1463149 ATGAAAAATT
* * * * * * * **
1463159 TGAATTTTTCAAAACTAATTTAATGTGAATTTAATAAAAATA-TTAGATGTATTTTAAAATTTTT
1 TGAATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTA-ATGAATTTTAAAAATTAA
*** * *
1463223 AAATTGAGAAAAATCCCCCTAAAAACATTTGCGAAGTAGAAAACAT-T-TTTCGAAAAT-GGAGG
65 AAACCAAGAAAAATCCCCCTAAAAACATTTACGAAGTAGAAAAC-TCTATTTCAAAAATAGGA-G
*
1463285 GATTTGAAAGAAAAAATTTCAAAAATGAATG-A-AAATGAA
128 AATTTGAAAGAAAAAATTT-AAAAATGAATGAAGAAATGAA
* *
1463324 TGAATTTTTGAAAACTGATTTAATATGAGTTAAATAATAATATTTAATGAATTTTAAAAATTAAA
1 TGAATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTAATGAATTTTAAAAATTAAA
** * * **** *
1463389 AACCAAGAAAAATCTTCTTGAAAACATTTACGAAGTATTCTACTCCGTATTTTAAAAATAGGAGA
66 AACCAAGAAAAATCCCCCTAAAAACATTTACGAAGTAGAAAACT-C-TATTTCAAAAATAGGAGA
*
1463454 ATTTTAAAGAAAAAATTTAAAAATGAATGAATGAAATGAA
129 ATTTGAAAGAAAAAATTTAAAAATGAATGAA-GAAATGAA
* * *
1463494 TGAATTTTTAAAAATTGATTTAACATGAATTAAATAATAATATTTTATGAATTTT
1 TGAATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTAATGAATTTT
1463549 CGAAATTTTA
Statistics
Matches: 185, Mismatches: 31, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
164 1 0.01
165 82 0.44
166 3 0.02
167 12 0.06
168 27 0.15
169 3 0.02
170 57 0.31
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (167 bp):
TGAATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTAATGAATTTTAAAAATTAAA
AACCAAGAAAAATCCCCCTAAAAACATTTACGAAGTAGAAAACTCTATTTCAAAAATAGGAGAAT
TTGAAAGAAAAAATTTAAAAATGAATGAAGAAATGAA
Found at i:1463490 original size:13 final size:13
Alignment explanation
Indices: 1463474--1463498 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1463464 AAAAATTTAA
1463474 AAATGAATGAATG
1 AAATGAATGAATG
1463487 AAATGAATGAAT
1 AAATGAATGAAT
1463499 TTTTAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
AAATGAATGAATG
Found at i:1463590 original size:170 final size:168
Alignment explanation
Indices: 1463286--1463593 Score: 422
Period size: 170 Copynumber: 1.8 Consensus size: 168
1463276 AAATGGAGGG
* *
1463286 ATTTGAAAGAAAAAATTTCAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGATTTAATATG
1 ATTTGAAAGAAAAAATTTCAAAAATGAATGAAAATGAATGAATTTTTAAAAACTGATTTAACATG
* * ** *
1463351 AGTTAAATAATAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCTTCTTGAAAACAT
66 AATTAAATAATAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCACGAAAAAAT
1463416 TTACGAAGTATTCTACTCCGTATTTTAAAAATAGGAGA
131 TTACGAAGTATTCTACTCCGTATTTTAAAAATAGGAGA
* *
1463454 ATTTTAAAGAAAAAATTT-AAAAATGAATGAATGAAATGAATGAATTTTTAAAAATTGATTTAAC
1 ATTTGAAAGAAAAAATTTCAAAAATGAATG-A--AAATGAATGAATTTTTAAAAACTGATTTAAC
* * * * * * *
1463518 ATGAATTAAATAATAATATTTTATGAATTTTCGAAATTTTATACCCATG-AAAATCCTCACGAAA
63 ATGAATTAAATAATAATATTTAATGAATTTT-AAAAATTAAAAACCAAGAAAAATCCTCACGAAA
1463582 AAATTTACGAAG
127 AAATTTACGAAG
1463594 AAGAAAACCC
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
167 11 0.09
168 18 0.15
170 80 0.67
171 11 0.09
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (168 bp):
ATTTGAAAGAAAAAATTTCAAAAATGAATGAAAATGAATGAATTTTTAAAAACTGATTTAACATG
AATTAAATAATAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCACGAAAAAAT
TTACGAAGTATTCTACTCCGTATTTTAAAAATAGGAGA
Found at i:1464759 original size:44 final size:44
Alignment explanation
Indices: 1464686--1464959 Score: 217
Period size: 44 Copynumber: 6.2 Consensus size: 44
1464676 CTAAAAGAAG
* * *
1464686 TTGACCAGGGT-GAAACCAACATGTTAAACAAGGATGAAAGGAGT
1 TTGACCAGGGTAG-AACCATCACGTCAAACAAGGATGAAAGGAGT
* * * **
1464730 TTGACCAGGGTGGAACCATTACGTCAAACAAAGAAAAAAAGGAGT
1 TTGACCAGGGTAGAACCATCACGTCAAAC-AAGGATGAAAGGAGT
* * * *** *
1464775 TTGACCAAGGTAGAACCATCATGCCAAAGGGGGAAGAAAGGAGT
1 TTGACCAGGGTAGAACCATCACGTCAAACAAGGATGAAAGGAGT
* * ** *
1464819 TTGACTAGGGTAGAACCATCACCTCAAACAAAAAATGAAAAGAGT
1 TTGACCAGGGTAGAACCATCACGTCAAAC-AAGGATGAAAGGAGT
* * * *
1464864 TTGACCAAGGTAGAACCATCACGCCAAACGATGATGAAAGGAGT
1 TTGACCAGGGTAGAACCATCACGTCAAACAAGGATGAAAGGAGT
* * * * * ** *
1464908 TTGACCAAGGCAAAACCATCACATCAGACAAAAAATAAAAGGAGT
1 TTGACCAGGGTAGAACCATCACGTCAAAC-AAGGATGAAAGGAGT
1464953 TTGACCA
1 TTGACCA
1464960 TATGTCAAAT
Statistics
Matches: 180, Mismatches: 46, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
44 92 0.51
45 88 0.49
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (44 bp):
TTGACCAGGGTAGAACCATCACGTCAAACAAGGATGAAAGGAGT
Found at i:1464791 original size:45 final size:45
Alignment explanation
Indices: 1464722--1464959 Score: 216
Period size: 45 Copynumber: 5.3 Consensus size: 45
1464712 AACAAGGATG
* * *
1464722 AAAGGAGTTTGACCAGGGTGGAACCATTACGTCAAACAAAGAAAA
1 AAAGGAGTTTGACCAAGGTAGAACCATCACGTCAAACAAAGAAAA
* * *** * *
1464767 AAAGGAGTTTGACCAAGGTAGAACCATCATGCCAAA-GGGGGAAG
1 AAAGGAGTTTGACCAAGGTAGAACCATCACGTCAAACAAAGAAAA
* * *
1464811 AAAGGAGTTTGACTAGGGTAGAACCATCACCTCAAACAAA-AAATGA
1 AAAGGAGTTTGACCAAGGTAGAACCATCACGTCAAACAAAGAAA--A
* * * **
1464857 AAA-GAGTTTGACCAAGGTAGAACCATCACGCCAAACGATG-ATG
1 AAAGGAGTTTGACCAAGGTAGAACCATCACGTCAAACAAAGAAAA
* * * *
1464900 AAAGGAGTTTGACCAAGGCAAAACCATCACATCAGACAAA-AAATA
1 AAAGGAGTTTGACCAAGGTAGAACCATCACGTCAAACAAAGAAA-A
1464945 AAAGGAGTTTGACCA
1 AAAGGAGTTTGACCA
1464960 TATGTCAAAT
Statistics
Matches: 149, Mismatches: 37, Indels: 14
0.75 0.19 0.07
Matches are distributed among these distances:
43 3 0.02
44 66 0.44
45 77 0.52
46 3 0.02
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.16
Consensus pattern (45 bp):
AAAGGAGTTTGACCAAGGTAGAACCATCACGTCAAACAAAGAAAA
Found at i:1464792 original size:89 final size:89
Alignment explanation
Indices: 1464677--1464959 Score: 331
Period size: 89 Copynumber: 3.2 Consensus size: 89
1464667 AACCTAAGTC
* * * ** *
1464677 TAAAAGAAG-TTGACCAGGGT-GAAACCAACATGTTAAACAAGGATGAAAGGAGTTTGACCAGGG
1 TAAAAGGAGTTTGACCAAGGTAG-AACCATCATGCCAAACGAGGATGAAAGGAGTTTGACCAGGG
* * *
1464740 TGGAACCATTACGTCAAACAAAGAAA
65 TAGAACCATCACATCAAACAAA-AAA
* * * *
1464766 -AAAAGGAGTTTGACCAAGGTAGAACCATCATGCCAAAGGGGGAAGAAAGGAGTTTGACTAGGGT
1 TAAAAGGAGTTTGACCAAGGTAGAACCATCATGCCAAACGAGGATGAAAGGAGTTTGACCAGGGT
*
1464830 AGAACCATCACCTCAAACAAAAAA
66 AGAACCATCACATCAAACAAAAAA
* * *
1464854 TGAAAA-GAGTTTGACCAAGGTAGAACCATCACGCCAAACGATGATGAAAGGAGTTTGACCAAGG
1 T-AAAAGGAGTTTGACCAAGGTAGAACCATCATGCCAAACGAGGATGAAAGGAGTTTGACCAGGG
* * *
1464918 CAAAACCATCACATCAGACAAAAAA
65 TAGAACCATCACATCAAACAAAAAA
1464943 TAAAAGGAGTTTGACCA
1 TAAAAGGAGTTTGACCA
1464960 TATGTCAAAT
Statistics
Matches: 165, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
88 14 0.08
89 146 0.88
90 5 0.03
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.16
Consensus pattern (89 bp):
TAAAAGGAGTTTGACCAAGGTAGAACCATCATGCCAAACGAGGATGAAAGGAGTTTGACCAGGGT
AGAACCATCACATCAAACAAAAAA
Found at i:1465037 original size:44 final size:45
Alignment explanation
Indices: 1464956--1465543 Score: 313
Period size: 44 Copynumber: 13.3 Consensus size: 45
1464946 AAGGAGTTTG
* * *
1464956 ACCATATGTCAAATC-AGAATGAA-AAGAATCTGGCTAGGGTGGTA
1 ACCATATGTCAAATCGAGAAT-AAGAAGAGTTTGACTAGGGTGGTA
*
1465000 ACCATATGAT-AGATCGA-AATAAGAAGAGTTTGACTAGGGTGGTA
1 ACCATATG-TCAAATCGAGAATAAGAAGAGTTTGACTAGGGTGGTA
* * * *
1465044 A-CATATGCCAAATC-AGAATGAA-AAGAATCTAACTAGGGTGGTA
1 ACCATATGTCAAATCGAGAAT-AAGAAGAGTTTGACTAGGGTGGTA
* * * * *
1465087 ACCATATGTCAAATCGA-AATGAGAAGAGTTTGGCCAAGGTGATA
1 ACCATATGTCAAATCGAGAATAAGAAGAGTTTGACTAGGGTGGTA
* * * * *
1465131 ACCACATGTCAAA-CAAGAATAAGGCAGA-TTTAACTATGGTGGTA
1 ACCATATGTCAAATCGAGAATAA-GAAGAGTTTGACTAGGGTGGTA
* * * *
1465175 ACCATACGTCAAAT-TAGAATGAA-AAGAATCTGACTAGGGTGGTA
1 ACCATATGTCAAATCGAGAAT-AAGAAGAGTTTGACTAGGGTGGTA
* * * * *
1465219 ACCAGACGTCAGACCGA-AATGAGAAGAGTTTGACTAGGGTGGTA
1 ACCATATGTCAAATCGAGAATAAGAAGAGTTTGACTAGGGTGGTA
* * * * * * *
1465263 ACCACATGTCAAATTG-GAAGGAGGTAGA-TTTGACCAAGGTGGTA
1 ACCATATGTCAAATCGAGAA-TAAGAAGAGTTTGACTAGGGTGGTA
*** * * ** * *
1465307 ACCATCCATCAAATC-AGAATAAAAAAAACCTTGACCATGGTGGTA
1 ACCATATGTCAAATCGAGAAT-AAGAAGAGTTTGACTAGGGTGGTA
* * * * * *
1465352 ACCATACGTCAGATCGA-AATGAGTAGAGTCTGAGCAAGGGGTGGTA
1 ACCATATGTCAAATCGAGAATAAGAAGAGTTTGA-CTA-GGGTGGTA
** * * *
1465398 ACCATACATCAAA-C-AGGAATGAGGCAGA-TTTGACAAGGGTGGTA
1 ACCATATGTCAAATCGA-GAAT-AAGAAGAGTTTGACTAGGGTGGTA
* * *
1465442 ACCATATGTCAAAATC-AGAATGAA-AAGAATCTGACCAGGGTGGTA
1 ACCATATGTC-AAATCGAGAAT-AAGAAGAGTTTGACTAGGGTGGTA
* * * * * * *
1465487 ACCATACGTCAGA-CCAAAATGAGAAGAGTTTGACCAAGGTGGTA
1 ACCATATGTCAAATCGAGAATAAGAAGAGTTTGACTAGGGTGGTA
*
1465531 ACCATACGTCAAA
1 ACCATATGTCAAA
1465544 CAGGAATGAA
Statistics
Matches: 416, Mismatches: 96, Indels: 64
0.72 0.17 0.11
Matches are distributed among these distances:
42 1 0.00
43 43 0.10
44 259 0.62
45 81 0.19
46 28 0.07
47 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (45 bp):
ACCATATGTCAAATCGAGAATAAGAAGAGTTTGACTAGGGTGGTA
Found at i:1465104 original size:87 final size:87
Alignment explanation
Indices: 1464958--1465118 Score: 261
Period size: 87 Copynumber: 1.9 Consensus size: 87
1464948 GGAGTTTGAC
* ** *
1464958 CATATGTCAAATCAGAATGAAAAGAATCTGGCTAGGGTGGTAACCATATGATAGATCGAAATAAG
1 CATATGCCAAATCAGAATGAAAAGAATCTAACTAGGGTGGTAACCATATGATAAATCGAAATAAG
1465023 AAGAGTTTGACTAGGGTGGTAA
66 AAGAGTTTGACTAGGGTGGTAA
*
1465045 CATATGCCAAATCAGAATGAAAAGAATCTAACTAGGGTGGTAACCATATG-TCAAATCGAAATGA
1 CATATGCCAAATCAGAATGAAAAGAATCTAACTAGGGTGGTAACCATATGAT-AAATCGAAATAA
1465109 GAAGAGTTTG
65 GAAGAGTTTG
1465119 GCCAAGGTGA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
86 1 0.01
87 67 0.99
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (87 bp):
CATATGCCAAATCAGAATGAAAAGAATCTAACTAGGGTGGTAACCATATGATAAATCGAAATAAG
AAGAGTTTGACTAGGGTGGTAA
Found at i:1465237 original size:132 final size:132
Alignment explanation
Indices: 1465028--1465552 Score: 629
Period size: 132 Copynumber: 4.0 Consensus size: 132
1465018 ATAAGAAGAG
* * * *
1465028 TTTGACTAGGGTGGTAA-CATATGCCAAATCAGAATGAAAAGAATCTAACTAGGGTGGTAACCAT
1 TTTGACTAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCAT
* * * * * * * *
1465092 ATGTCAAATCGAAATGAGAAGAGTTTGGCCAAGGTGATAACCACATGTCAAACAAGAATAAGGCA
66 ACGTCAGACCGAAATGAGAAGAGTTTGACCAAGGTGGTAACCACACGTCAAACAGGAATGAGGCA
1465157 GA
131 GA
* * * * *
1465159 TTTAACTATGGTGGTAACCATACGTCAAATTAGAATGAAAAGAATCTGACTAGGGTGGTAACCAG
1 TTTGACTAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCAT
* * * ** * *
1465224 ACGTCAGACCGAAATGAGAAGAGTTTGACTAGGGTGGTAACCACATGTCAAATTGGAAGGAGGTA
66 ACGTCAGACCGAAATGAGAAGAGTTTGACCAAGGTGGTAACCACACGTCAAACAGGAATGAGGCA
1465289 GA
131 GA
* * * * * * * *
1465291 TTTGACCAAGGTGGTAACCATCCATCAAATCAGAATAAAAAAAACCTTGACCATGGTGGTAACCA
1 TTTGACTAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATC-TGACCAGGGTGGTAACCA
* * * * * *
1465356 TACGTCAGATCGAAATGAGTAGAGTCTGAGCAAGGGGTGGTAACCATACATCAAACAGGAATGAG
65 TACGTCAGACCGAAATGAGAAGAGTTTGACCAA--GGTGGTAACCACACGTCAAACAGGAATGAG
1465421 GCAGA
128 GCAGA
* *
1465426 TTTGACAAGGGTGGTAACCATATGTCAAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCA
1 TTTGACTAGGGTGGTAACCATACGTC-AAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCA
* *
1465491 TACGTCAGACCAAAATGAGAAGAGTTTGACCAAGGTGGTAACCATACGTCAAACAGGAATGA
65 TACGTCAGACCGAAATGAGAAGAGTTTGACCAAGGTGGTAACCACACGTCAAACAGGAATGA
1465553 AAAGAAATTT
Statistics
Matches: 329, Mismatches: 60, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
131 15 0.05
132 133 0.40
133 70 0.21
135 94 0.29
136 17 0.05
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.21
Consensus pattern (132 bp):
TTTGACTAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATCTGACCAGGGTGGTAACCAT
ACGTCAGACCGAAATGAGAAGAGTTTGACCAAGGTGGTAACCACACGTCAAACAGGAATGAGGCA
GA
Found at i:1466539 original size:16 final size:15
Alignment explanation
Indices: 1466518--1466547 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1466508 ATTGGCCCAA
1466518 CAAGATCAAGGTTCAT
1 CAAGATCAA-GTTCAT
1466534 CAAGATCAAGTTCA
1 CAAGATCAAGTTCA
1466548 AGAGGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (15 bp):
CAAGATCAAGTTCAT
Found at i:1479274 original size:24 final size:24
Alignment explanation
Indices: 1479186--1479279 Score: 76
Period size: 24 Copynumber: 4.1 Consensus size: 24
1479176 TCAAAGAGAA
* * *
1479186 AGAAGAGATAGAAGGGATAATAGG
1 AGAAGAGATAGGAGAGATAATAAG
* *
1479210 AGAGGAGATGGGAGAGATAAT-AG
1 AGAAGAGATAGGAGAGATAATAAG
1479233 AGATAG-GA-AGGA-AG---ATAAG
1 AGA-AGAGATAGGAGAGATAATAAG
1479252 AGAAGAGATAGGAGAGATAATAAAG
1 AGAAGAGATAGGAGAGATAAT-AAG
1479277 AGA
1 AGA
1479280 GGAGGGTTGA
Statistics
Matches: 54, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
18 4 0.07
19 7 0.13
20 4 0.07
21 4 0.07
22 3 0.06
23 6 0.11
24 20 0.37
25 6 0.11
ACGTcount: A:0.51, C:0.00, G:0.37, T:0.12
Consensus pattern (24 bp):
AGAAGAGATAGGAGAGATAATAAG
Found at i:1489281 original size:20 final size:20
Alignment explanation
Indices: 1489173--1489290 Score: 91
Period size: 20 Copynumber: 5.8 Consensus size: 20
1489163 GGTTTACCCA
*
1489173 AATGTATCGATACATTTTGC
1 AATGTATCGATACATTTTAC
* *
1489193 ATTGTATCGATACATTGCT-C
1 AATGTATCGATACATT-TTAC
*
1489213 ATTGTATCGATACATTTTATC
1 AATGTATCGATACATTTTA-C
* * *
1489234 GATATATTC--TAGA-TTTACCC
1 AATGTA-TCGATACATTTTA--C
1489254 AGATGTATCGATACATTTTAC
1 A-ATGTATCGATACATTTTAC
1489275 AATGTATCGATACATT
1 AATGTATCGATACATT
1489291 CAAGCATTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
19 5 0.06
20 53 0.68
21 11 0.14
22 5 0.06
23 4 0.05
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.41
Consensus pattern (20 bp):
AATGTATCGATACATTTTAC
Found at i:1491312 original size:12 final size:11
Alignment explanation
Indices: 1491293--1491452 Score: 137
Period size: 12 Copynumber: 14.9 Consensus size: 11
1491283 AGAGAAAAAA
1491293 GAGATAGGAGG
1 GAGATAGGAGG
1491304 GATGATAGGAGG
1 GA-GATAGGAGG
1491316 AGAGATAGGA-G
1 -GAGATAGGAGG
*
1491327 G-GATAGTA--
1 GAGATAGGAGG
1491335 GAGATAGGAGG
1 GAGATAGGAGG
1491346 GATGATAGGAGG
1 GA-GATAGGAGG
1491358 AGAGATAGGA--
1 -GAGATAGGAGG
*
1491368 GAGATAGTA--
1 GAGATAGGAGG
1491377 GAGATAGGAGG
1 GAGATAGGAGG
1491388 GATGATAGGAGG
1 GA-GATAGGAGG
1491400 AGAGATAGGA--
1 -GAGATAGGAGG
*
1491410 GAGATAGTA--
1 GAGATAGGAGG
1491419 GAGATAGGAGG
1 GAGATAGGAGG
1491430 GATGATAGGAGG
1 GA-GATAGGAGG
1491442 AGAGATAGGAG
1 -GAGATAGGAG
1491453 AGATAATAAA
Statistics
Matches: 128, Mismatches: 6, Indels: 29
0.79 0.04 0.18
Matches are distributed among these distances:
8 1 0.01
9 44 0.34
10 1 0.01
11 9 0.07
12 65 0.51
13 8 0.06
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1491331 original size:9 final size:9
Alignment explanation
Indices: 1491313--1491457 Score: 110
Period size: 9 Copynumber: 17.1 Consensus size: 9
1491303 GGATGATAGG
1491313 AGGAGAGAT
1 AGGAGAGAT
*
1491322 AGGAGGGAT
1 AGGAGAGAT
*
1491331 AGTAGAGAT
1 AGGAGAGAT
*
1491340 AGGAGGGAT
1 AGGAGAGAT
* *
1491349 --GATAG-G
1 AGGAGAGAT
1491355 AGGAGAGAT
1 AGGAGAGAT
1491364 AGGAGAGAT
1 AGGAGAGAT
*
1491373 AGTAGAGAT
1 AGGAGAGAT
*
1491382 AGGAGGGAT
1 AGGAGAGAT
* *
1491391 --GATAG-G
1 AGGAGAGAT
1491397 AGGAGAGAT
1 AGGAGAGAT
1491406 AGGAGAGAT
1 AGGAGAGAT
*
1491415 AGTAGAGAT
1 AGGAGAGAT
*
1491424 AGGAGGGAT
1 AGGAGAGAT
* *
1491433 --GATAG-G
1 AGGAGAGAT
1491439 AGGAGAGAT
1 AGGAGAGAT
1491448 AGGAGAGAT
1 AGGAGAGAT
1491457 A
1 A
1491458 ATAAAGAGAG
Statistics
Matches: 101, Mismatches: 26, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
7 9 0.09
8 12 0.12
9 80 0.79
ACGTcount: A:0.41, C:0.00, G:0.46, T:0.14
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1491351 original size:42 final size:42
Alignment explanation
Indices: 1491292--1491485 Score: 343
Period size: 42 Copynumber: 4.6 Consensus size: 42
1491282 AAGAGAAAAA
*
1491292 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGGGATAGT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
1491334 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
1491376 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
*
1491418 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
* * *
1491460 AAAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGGAGGGATGATAGGAGGAG
1491486 GAGAGAAGAA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 147 1.00
ACGTcount: A:0.41, C:0.01, G:0.46, T:0.13
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
Found at i:1497807 original size:9 final size:10
Alignment explanation
Indices: 1497784--1497809 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1497774 TCGAAACGAT
1497784 TTTTTTGAAA
1 TTTTTTGAAA
1497794 TTTTTTGAAA
1 TTTTTTGAAA
1497804 TTTTTT
1 TTTTTT
1497810 CCTCAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (10 bp):
TTTTTTGAAA
Found at i:1498565 original size:102 final size:100
Alignment explanation
Indices: 1498420--1498789 Score: 322
Period size: 102 Copynumber: 3.7 Consensus size: 100
1498410 ATTTTTCATC
* * * * *
1498420 TCGGGGATACTCTAACCCTAGTTTTATTTCTAAAACATCAATTTTCCACAATCAGAGATACTCCA
1 TCGGAGATACTCCAACCCGA-TTTTATTTCCAAAACACCAATTTTCCACAATC-GAGATACTCCA
* ** * *
1498485 ACTCCGATTTTATTTCTAAAACACCAATTTTCCATAA
64 ACCCCGACCTTATTTCTAAAACATCAATTTTCCACAA
* *
1498522 TCGGAGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAAT----TTACTCCAA
1 TCGGAGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTTCCACAATCGAGATACTCCAA
* * *
1498583 CCCCGGCCTCATTTCTAAAGCATCAATTTTCCACAA
65 CCCCGACCTTATTTCTAAAACATCAATTTTCCACAA
* * * * ** * **
1498619 TCGGGGATACTCCAACCCCAGCTTTATTTCCAAAATATTAA-TTTCTCATAATCGAGGATACTTT
1 TCGGAGATACTCCAACCCGA-TTTTATTTCCAAAACACCAATTTTC-CACAATCGA-GATACTCC
* *
1498683 AACCCCGACCTTATTTCTAAATCATCGA-TTTCTCACAA
63 AACCCCGACCTTATTTCTAAAACATCAATTTTC-CACAA
* * * * *
1498721 T-AGAGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCC
1 TCGGA-GATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTTCCACAATC-GAGATACTCC
1498785 AACCC
63 AACCC
1498790 TGTTATTTCT
Statistics
Matches: 213, Mismatches: 42, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
96 6 0.03
97 72 0.34
101 5 0.02
102 121 0.57
103 9 0.04
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (100 bp):
TCGGAGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTCCACAATCGAGATACTCCAAC
CCCGACCTTATTTCTAAAACATCAATTTTCCACAA
Found at i:1498719 original size:148 final size:148
Alignment explanation
Indices: 1498445--1498721 Score: 335
Period size: 148 Copynumber: 1.9 Consensus size: 148
1498435 CCCTAGTTTT
* * *
1498445 ATTTCTAAAACATCAATTTTCCACAATCAGAGATACTCCAACTCCGATTTTATTTCTAAAACACC
1 ATTTCTAAAACATCAATTTTCCACAATCAGAGATACTCCAACCCCGACTTTATTTCCAAAACACC
* ** *
1498510 AATTTTCCATAATCGGAGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATT
66 AATTTTCCATAATCGGAGATACTCCAACCCCGACCTTATTTCCAAAACACCAATTTCTCACAATT
1498575 TACTCCAACCCCGGCCTC
131 TACTCCAACCCCGGCCTC
* * * * *
1498593 ATTTCTAAAGCATCAATTTTCCACAATCGGGGATACTCCAACCCC-AGCTTTATTTCCAAAATAT
1 ATTTCTAAAACATCAATTTTCCACAATCAGAGATACTCCAACCCCGA-CTTTATTTCCAAAACAC
* ** * * * *
1498657 TAA-TTTCTCATAATC-GAGGATACTTTAACCCCGACCTTATTTCTAAATCATCGATTTCTCACA
65 CAATTTTC-CATAATCGGA-GATACTCCAACCCCGACCTTATTTCCAAAACACCAATTTCTCACA
1498720 AT
128 AT
1498722 AGAGGATACT
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
147 7 0.07
148 100 0.93
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.33
Consensus pattern (148 bp):
ATTTCTAAAACATCAATTTTCCACAATCAGAGATACTCCAACCCCGACTTTATTTCCAAAACACC
AATTTTCCATAATCGGAGATACTCCAACCCCGACCTTATTTCCAAAACACCAATTTCTCACAATT
TACTCCAACCCCGGCCTC
Found at i:1498791 original size:51 final size:49
Alignment explanation
Indices: 1498423--1498789 Score: 246
Period size: 51 Copynumber: 7.3 Consensus size: 49
1498413 TTTCATCTCG
* * *
1498423 GGGATACTCTAACCCTAGTTTTATTTCTAAAACATCAATTTTCCACAATC
1 GGGATACTCCAACCCGA-TTTTATTTCTAAAACATCAATTTTCTACAATC
* * * *
1498473 AGAGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCCATAATC
1 -GGGATACTCCAAC-CCGATTTTATTTCTAAAACATCAATTTTCTACAATC
* *
1498524 GGAGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTT-TCACAAT-
1 GG-GATACTCCAAC-CCGATTTTATTTCTAAAACATCAATTTTCT-ACAATC
* *** * * *
1498574 ---TTACTCCAACCCCGGCCTCATTTCTAAAGCATCAATTTTCCACAATC
1 GGGATACTCCAA-CCCGATTTTATTTCTAAAACATCAATTTTCTACAATC
* * * * * *
1498621 GGGGATACTCCAACCCCAGCTTTATTTCCAAAATATTAA-TTTCTCATAATC
1 -GGGATACTCCAACCCGA-TTTTATTTCTAAAACATCAATTTTCT-ACAATC
** ** * * *
1498672 GAGGATACTTTAACCCCGACCTTATTTCTAAATCATCGA-TTTCTCACAATA
1 G-GGATACTCCAA-CCCGATTTTATTTCTAAAACATCAATTTTCT-ACAATC
* *
1498723 GAGGATACTCCAACCCTGATTTTATTT-TCAAAACACCAATTTTCTATAATC
1 G-GGATACTCCAACCC-GATTTTATTTCT-AAAACATCAATTTTCTACAATC
1498774 AGGGATACTCCAACCC
1 -GGGATACTCCAACCC
1498790 TGTTATTTCT
Statistics
Matches: 249, Mismatches: 49, Indels: 36
0.75 0.15 0.11
Matches are distributed among these distances:
46 34 0.14
47 1 0.00
50 13 0.05
51 188 0.76
52 13 0.05
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (49 bp):
GGGATACTCCAACCCGATTTTATTTCTAAAACATCAATTTTCTACAATC
Found at i:1511288 original size:11 final size:11
Alignment explanation
Indices: 1511252--1511311 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
1511242 CACCTTCTTT
1511252 AAAAAAAAAG-
1 AAAAAAAAAGA
* *
1511262 AGAGAAAAAGCA
1 AAAAAAAAAG-A
*
1511274 AAAAGAAAA-A
1 AAAAAAAAAGA
* *
1511284 CAAAACAAAGA
1 AAAAAAAAAGA
1511295 AAAAAAAAAGA
1 AAAAAAAAAGA
1511306 AAAAAA
1 AAAAAA
1511312 CCTGCTTGAG
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
10 15 0.41
11 16 0.43
12 6 0.16
ACGTcount: A:0.83, C:0.05, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:1511295 original size:15 final size:14
Alignment explanation
Indices: 1511252--1511302 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
1511242 CACCTTCTTT
* *
1511252 AAAAAAAAAGAGAG
1 AAAAAAAAACAAAG
**
1511266 AAAAAGCAA-AAAG
1 AAAAAAAAACAAAG
1511279 AAAAACAAAACAAAG
1 AAAAA-AAAACAAAG
1511294 AAAAAAAAA
1 AAAAAAAAA
1511303 AGAAAAAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
13 8 0.27
14 13 0.43
15 9 0.30
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAAAACAAAG
Found at i:1512456 original size:55 final size:55
Alignment explanation
Indices: 1512375--1512977 Score: 815
Period size: 55 Copynumber: 11.0 Consensus size: 55
1512365 GTCTTTTCCT
* *
1512375 TTTC-AAGCCCACACGAGATGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
* * *
1512429 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGCCCTTAAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
* * * * *
1512484 TTTTAAAGCCCACACAAGTTGATAGCACCTTCTTGTCCTCCAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
*
1512539 TTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAAGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACGCC
* * *
1512594 CTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGAATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
* * *
1512649 TTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTTAAAGAGCAGAATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACGCC
* *
1512704 TTTCAAAGACCACACAAGTTGGTGGCACCTT-TCAGTCCTTAAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACGCC
*
1512759 TTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAAGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACGCC
* ** * * * *
1512814 TTTCAAAGCCCACACAAGTTGATGGCATTTTTTAATCTTCAAAGAGCAGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
* **
1512869 TTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACAAC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGACGCC
* *
1512924 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGACGC
1512978 TCTCTCCTTT
Statistics
Matches: 493, Mismatches: 50, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
54 8 0.02
55 483 0.98
56 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (55 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC
Found at i:1512544 original size:110 final size:110
Alignment explanation
Indices: 1512285--1512977 Score: 892
Period size: 110 Copynumber: 6.2 Consensus size: 110
1512275 TTCACTTTTC
*
1512285 AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGT
1 AGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCACCTT-TCAGT
* * *
1512349 CCTTAAAGAGCAGGACGTCTTTTCCTTTTC-AAGCCCACACGAGATGGTGGCACCTTCT
59 CCTCAAAGAGCAGGACG------CC-TTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
* * *
1512407 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGCCCTTAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
* * *
1512472 GAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATAGCACCTTCT
66 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
* *
1512517 TGTCCTCCAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
* *
1512582 GAGCAAGACGCCCTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
66 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
* * *
1512627 AGTCCTCAAAGAGCAGAATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTTAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
* * *
1512692 GAGCAGAATGCCTTTCAAAGACCACACAAGTTGGTGGCACCTT-T
66 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
*
1512736 CAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
1 -AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
* * ** *
1512801 AGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGATGGCATTTTTT
65 AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
* * * *
1512847 AATCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAA
** * *
1512911 AGAGCAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCC
65 AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-CT
1512957 AGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
1512978 TCTCTCCTTT
Statistics
Matches: 510, Mismatches: 55, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
109 9 0.02
110 429 0.84
111 1 0.00
116 42 0.08
117 3 0.01
120 1 0.00
121 1 0.00
122 24 0.05
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (110 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT
Found at i:1512601 original size:165 final size:164
Alignment explanation
Indices: 1512375--1513525 Score: 942
Period size: 165 Copynumber: 7.0 Consensus size: 164
1512365 GTCTTTTCCT
* *
1512375 TTTC-AAGCCCACACGAGATGGTGGCACC-TTCTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
** * * *
1512438 CCACACAAGTTGGTGGCACCTTTTAGCCCTTAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGT
65 CCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGT
* * *
1512503 TGATAGCACCTTCTTGTCCTCCAAGAGCAGGACGCC
130 TGATGGCACCTT-TTGTCCTCAAAGAGCAGGATGCC
* *
1512539 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCCTTCAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
* * *
1512604 CACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGAATGCCTTTCAAAGCCCACACAAGTT
66 CACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTT
* * * *
1512669 GGTGGCACCTTTCAGTCCTTAAAGAGCAGAATGCC
131 GATGGCACCTTT-TGTCCTCAAAGAGCAGGATGCC
* *
1512704 TTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
* *
1512769 CACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTT
66 CACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTT
** * *
1512834 GATGGCATTTTTTAATCTTCAAAGAGCAGGATGCC
131 GATGGCACCTTTT-GTCCTCAAAGAGCAGGATGCC
* ** *
1512869 TTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACAACTTTTAAAGC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
* *
1512933 CCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACG-C--T-----CTCTC-C---
65 CCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
* *
1512985 TT--T--CATCCTTTAGTCCTCAAAGAGCAGGACGCC
129 TTGATGGCA-CCTTTTGTCCTCAAAGAGCAGGATGCC
*
1513018 TTTTAAAGCCCACACAAGTTGGTCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAG
1 -TTT--------CA-AA----G-CCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAG
** * * * ** *
1513082 GACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACAACTTTT
50 GACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTC
* ** *
1513147 AAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACG-C
115 AAAGCCCACACAAGTTGATGGCACCTT--TTGTCCTCAAAGAGCAGGATGCC
* * * * *
1513197 --T-----CTCTC-C---TT--TCGC-CCTTT-AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
** **
1513247 CACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATACCTTTCAAAGCCCACACAAGTT
66 CACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTT
* * *
1513312 GGTGGCA-TTTTCTAGTCCTCAAGGAGCAGGATGTTTTCTCC
131 GATGGCACCTTT-T-GTCCTCAAAGAGCAGGATG------CC
** * * * * * * *
1513353 TTTTGAAGACCACTCGAGTTGGTGGCACCTTCCAGTCTTCAAAGAGCAGAATGCTTTCTCTTTGC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--C--GC-CTTT-C
* *
1513418 AAAGCCCACACAAGTTGGTGGAACCTTCCAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAG
60 AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG-C----C-TTTCAAAG
* *
1513483 CCCACACGAGTTGGTGGCA-CTGTTTAGTCCTCAAAGAGCAGGA
119 CCCACACAAGTTGATGGCACCT-TTT-GTCCTCAAAGAGCAGGA
1513526 CACCTTTTCC
Statistics
Matches: 816, Mismatches: 92, Indels: 139
0.78 0.09 0.13
Matches are distributed among these distances:
149 135 0.17
150 6 0.01
151 7 0.01
153 4 0.00
156 3 0.00
157 6 0.01
158 3 0.00
159 2 0.00
162 1 0.00
163 3 0.00
164 107 0.13
165 379 0.46
166 3 0.00
167 3 0.00
169 3 0.00
170 4 0.00
171 16 0.02
172 3 0.00
173 1 0.00
175 1 0.00
176 7 0.01
177 43 0.05
178 5 0.01
179 1 0.00
180 22 0.03
182 1 0.00
183 45 0.06
184 2 0.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
CACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTT
GATGGCACCTTTTGTCCTCAAAGAGCAGGATGCC
Found at i:1513046 original size:15 final size:15
Alignment explanation
Indices: 1513026--1513055 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1513016 CCTTTTAAAG
1513026 CCCACACAAGTTGGT
1 CCCACACAAGTTGGT
1513041 CCCACACAAGTTGGT
1 CCCACACAAGTTGGT
1513056 GGCACTTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (15 bp):
CCCACACAAGTTGGT
Found at i:1513125 original size:55 final size:55
Alignment explanation
Indices: 1513041--1513194 Score: 290
Period size: 55 Copynumber: 2.8 Consensus size: 55
1513031 ACAAGTTGGT
1513041 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACAACTTTTAAAG
1 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACAACTTTTAAAG
* *
1513096 CCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACAACTTTTAAAG
1 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACAACTTTTAAAG
1513151 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGAC
1 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGAC
1513195 GCTCTCTCCT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 95 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (55 bp):
CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACAACTTTTAAAG
Found at i:1513125 original size:219 final size:219
Alignment explanation
Indices: 1512852--1513259 Score: 735
Period size: 219 Copynumber: 1.9 Consensus size: 219
1512842 TTTTTAATCT
***
1512852 TCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
1 TCAAAGAGCAGGACAACTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
1512917 GGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTC
66 GGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTC
*
1512982 TCCTTTCATCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTCCCACA
131 TCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTCCCACA
1513047 CAAGTTGGTGGCACTTCCCAGTCC
196 CAAGTTGGTGGCACTTCCCAGTCC
* * *
1513071 TCAAAGAGCAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTA
1 TCAAAGAGCAGGACAACTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
1513136 GGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTC
66 GGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTC
* *
1513201 TCCTTTCGCCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGT
131 TCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGT
1513260 GGCATTTTCC
Statistics
Matches: 180, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
219 180 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (219 bp):
TCAAAGAGCAGGACAACTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
GGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTC
TCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTCCCACA
CAAGTTGGTGGCACTTCCCAGTCC
Found at i:1513355 original size:149 final size:149
Alignment explanation
Indices: 1513066--1513342 Score: 446
Period size: 149 Copynumber: 1.9 Consensus size: 149
1513056 GGCACTTCCC
1513066 AGTCCTCAAAGAGCAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAA
* *
1513131 GAGTAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
66 GAGCAGGACAACTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
1513196 CTCTCTCCTTTCGCCCTTT
131 CTCTCTCCTTTCGCCCTTT
*** *
1513215 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAA
* * * * * *
1513280 GAGCAGGATACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAGGAGCAGGA
66 GAGCAGGACAACTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
1513343 TGTTTTCTCC
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
149 116 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (149 bp):
AGTCCTCAAAGAGCAGGACAACTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAA
GAGCAGGACAACTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
CTCTCTCCTTTCGCCCTTT
Found at i:1513526 original size:61 final size:59
Alignment explanation
Indices: 1513212--1513525 Score: 283
Period size: 61 Copynumber: 5.4 Consensus size: 59
1513202 CCTTTCGCCC
1513212 TTTAGTCCTCAAAGAGCAGGATGC----CTTTT-AAAGCCCACACAAGTTGGTGGCA-T
1 TTTAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACT
* *
1513265 TTTCCAGTCCTCAAAGAGCAGGATAC----C-TTTCAAAGCCCACACAAGTTGGTGGCATT
1 TTT--AGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACT
* ** * * *
1513321 TTCTAGTCCTCAAGGAGCAGGATG-TTTTCTCCTTTTGAAGACCACTCGAGTTGGTGGCACCT
1 TT-TAGTCCTCAAAGAGCAGGATGCTTTTCT--TTTCAAAGCCCACACAAGTTGGTGGCA-CT
** * * * *
1513383 TCCAGTCTTCAAAGAGCAGAATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGAACCT
1 TTTAGTCCTCAAAGAGCAGGATGCTTT-TCTTTTCAAAGCCCACACAAGTTGGTGGCA-CT
** * * *
1513444 TCCAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACT
1 TTTAGTCCTCAAAGAGCAGGATG-CTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACT
1513504 GTTTAGTCCTCAAAGAGCAGGA
1 -TTTAGTCCTCAAAGAGCAGGA
1513526 CACCTTTTCC
Statistics
Matches: 213, Mismatches: 31, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
53 3 0.01
54 3 0.01
55 62 0.29
56 3 0.01
57 1 0.00
58 1 0.00
60 2 0.01
61 126 0.59
62 9 0.04
63 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (59 bp):
TTTAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACT
Found at i:1513691 original size:43 final size:43
Alignment explanation
Indices: 1513530--1513801 Score: 213
Period size: 42 Copynumber: 6.6 Consensus size: 43
1513520 GCAGGACACC
* * *
1513530 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAAGACACATTTCA
1 TTTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* *
1513573 -TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTT-A
1 TTTTCCTT-TTTT-CC-TTTGTCCTCAAAGAGCAGGACGCA-TTTCA
*
1513618 TTTTCC-TTTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCA
1 TTTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
1513660 TTTTCCTTTTTTCCTTTGTCCTCGAAA-AGCAGGACG----T-A
1 TTTTCCTTTTTTCCTTTGTCCTC-AAAGAGCAGGACGCATTTCA
* * * *
1513698 --CT-C-TTTTTCACTTTGTCCTC-AAGAAGTAGGACAC-TTTCC
1 TTTTCCTTTTTTC-CTTTGTCCTCAAAG-AGCAGGACGCATTTCA
* * * *
1513737 TTTT-CTTTCTTCCTTTGTCCTCAAGGAGCAAGACCCATTTCA
1 TTTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
*
1513779 --TT-CTCTTTTCCTTTGTCCTCAAA
1 TTTTCCTTTTTTCCTTTGTCCTCAAA
1513802 AGTGGGACAC
Statistics
Matches: 186, Mismatches: 23, Indels: 43
0.74 0.09 0.17
Matches are distributed among these distances:
33 2 0.01
34 6 0.03
35 18 0.10
36 1 0.01
38 2 0.01
39 1 0.01
40 20 0.11
41 22 0.12
42 47 0.25
43 28 0.15
44 9 0.05
45 22 0.12
46 8 0.04
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (43 bp):
TTTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
Found at i:1513744 original size:41 final size:41
Alignment explanation
Indices: 1513698--1513811 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 41
1513688 GCAGGACGTA
*
1513698 CTCTTTTTCACTTTGTCCTCAAGAAGTAGGACAC-TTTCCTT
1 CTCTTTTTC-CTTTGTCCTCAAGAAGTAGGACACATTTCATT
* * * * *
1513739 TTCTTTCTTCCTTTGTCCTCAAGGAGCAAGACCCATTTCATT
1 CTCTTT-TTCCTTTGTCCTCAAGAAGTAGGACACATTTCATT
*
1513781 CTC-TTTTCCTTTGTCCTCAA-AAGTGGGACAC
1 CTCTTTTTCCTTTGTCCTCAAGAAGTAGGACAC
1513812 CCCTTTCACT
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
39 6 0.10
40 15 0.25
41 27 0.46
42 11 0.19
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.39
Consensus pattern (41 bp):
CTCTTTTTCCTTTGTCCTCAAGAAGTAGGACACATTTCATT
Found at i:1514324 original size:21 final size:21
Alignment explanation
Indices: 1514279--1514324 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1514269 TTTTTGCCAA
* *
1514279 AATGTATCGATACATGCCCTT
1 AATGTATCGATACAGGCCCTC
1514300 AATGTATCGATACAAGGCCC-C
1 AATGTATCGATAC-AGGCCCTC
1514321 AATG
1 AATG
1514325 GTAAAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (21 bp):
AATGTATCGATACAGGCCCTC
Found at i:1514406 original size:20 final size:20
Alignment explanation
Indices: 1514381--1514429 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
1514371 AAAGCTAGAA
*
1514381 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
1514401 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
1514421 TGTATCGAT
1 TGTATCGAT
1514430 GCAATGTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:1516855 original size:51 final size:51
Alignment explanation
Indices: 1516794--1516963 Score: 268
Period size: 51 Copynumber: 3.3 Consensus size: 51
1516784 GATTTTCATC
* *
1516794 TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCCACGA
1 TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAA
* * *
1516845 TCGGAGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCCATAA
1 TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAA
* * *
1516896 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAA
1 TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAA
1516947 TCGGGGATACTCCAACC
1 TCGGGGATACTCCAACC
1516964 TCGGTATTTC
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 109 1.00
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (51 bp):
TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAA
Found at i:1517026 original size:79 final size:79
Alignment explanation
Indices: 1516895--1517042 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 79
1516885 ATTTTCCATA
* ** * *
1516895 ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCC
1 ATCGGGGATACTCCAACCCCGACCTCATTTCCAAAACACCAATTTTCCACAATCGGGGATACTCC
1516960 AACCTCGGTATTTC
66 AACCTCGGTATTTC
* * * *
1516974 ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCC
1 ATCGGGGATACTCCAACCCCGACCTCATTTCCAAAACACCAATTTTCCACAATCGGGGATACTCC
1517039 AACC
66 AACC
1517043 CCGGCTTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 60 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGACCTCATTTCCAAAACACCAATTTTCCACAATCGGGGATACTCC
AACCTCGGTATTTC
Found at i:1517079 original size:130 final size:130
Alignment explanation
Indices: 1516844--1517096 Score: 344
Period size: 130 Copynumber: 1.9 Consensus size: 130
1516834 ATTTTCCACG
* ** * *
1516844 ATCGGAGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGGGGATACTCC
1 ATCGGAGATACTCCAACCCCGACCTCATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCC
* * *
1516909 AACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGGTATTTC
66 AACCCCGACTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCTCGGTATTTC
* * * *
1516974 ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCC
1 ATCGGAGATACTCCAACCCCGACCTCATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCC
* * ** * *
1517039 AACCCCGGCTTTATTTCCAAAATATTAATTTCTCATAATCGGGGATACTTCAACCTCG
66 AACCCCGACTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCTCG
1517097 ACCTTATTTC
Statistics
Matches: 105, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
130 105 1.00
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (130 bp):
ATCGGAGATACTCCAACCCCGACCTCATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCC
AACCCCGACTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCTCGGTATTTC
Found at i:1517106 original size:181 final size:181
Alignment explanation
Indices: 1516794--1517144 Score: 463
Period size: 181 Copynumber: 1.9 Consensus size: 181
1516784 GATTTTCATC
** * *
1516794 TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCCACGATCGGAGATACTCCA
1 TCGGGGATACTCCAACCCCGACCTCATTTCTAAAACATCAATTTTCCACAATCGGAGATACTCCA
* * * **
1516859 ACTCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATT
66 ACCCCGACTTTATTTCCAAAACACCAATTTTCCATAATCGGGGATACTCCAACTCCGACCTTATT
* *
1516924 TCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGGTATTTCA
131 TCCAAAACACCAATTTCTCACAATAGGGGATACTCCAACCTCGGTATTTCA
* * *
1516975 TCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCCA
1 TCGGGGATACTCCAACCCCGACCTCATTTCTAAAACATCAATTTTCCACAATCGGAGATACTCCA
* * ** *
1517040 ACCCCGGCTTTATTTCCAAAATATTAA-TTTCTCATAATCGGGGATACTTCAAC-CTCGACCTTA
66 ACCCCGACTTTATTTCCAAAACACCAATTTTC-CATAATCGGGGATACTCCAACTC-CGACCTTA
* * * *
1517103 TTTCTAAATCATCGATTTCTCACAATAGGGGATACTCCAACC
129 TTTCCAAAACACCAATTTCTCACAATAGGGGATACTCCAACC
1517145 CTAATTTTAT
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
180 5 0.03
181 140 0.97
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (181 bp):
TCGGGGATACTCCAACCCCGACCTCATTTCTAAAACATCAATTTTCCACAATCGGAGATACTCCA
ACCCCGACTTTATTTCCAAAACACCAATTTTCCATAATCGGGGATACTCCAACTCCGACCTTATT
TCCAAAACACCAATTTCTCACAATAGGGGATACTCCAACCTCGGTATTTCA
Found at i:1517154 original size:102 final size:102
Alignment explanation
Indices: 1516974--1517196 Score: 288
Period size: 102 Copynumber: 2.2 Consensus size: 102
1516964 TCGGTATTTC
*
1516974 ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCC
1 ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTCCACAATAGGGGATACTCC
** * **
1517039 AACCCCGGCTTTATTTCCAAAATATTAA-TTTCTCATA
66 AACCCCAACTTTATTTCCAAAACACCAATTTTCT-ATA
* * * *
1517076 ATCGGGGATACTTCAACCTCGACCTTATTTCTAAATCATCGA-TTTCTCACAATAGGGGATACTC
1 ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTC-CACAATAGGGGATACTC
* * *
1517140 CAACCCTAATTTTATTTTCAAAACACCAATTTTCTATA
65 CAACCCCAACTTTATTTCCAAAACACCAATTTTCTATA
*
1517178 ATCAGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
1517197 TGTTATTTTC
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
101 4 0.04
102 94 0.91
103 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (102 bp):
ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTTTCCACAATAGGGGATACTCC
AACCCCAACTTTATTTCCAAAACACCAATTTTCTATA
Found at i:1517156 original size:51 final size:51
Alignment explanation
Indices: 1516974--1517145 Score: 213
Period size: 51 Copynumber: 3.4 Consensus size: 51
1516964 TCGGTATTTC
* *
1516974 ATCGGGGATACTCCAACCCCGACCTCATTTCTAAAGCATCGATTT-TCCACA
1 ATCGGGGATACTCCAACCCCGACCTTATTTCTAAATCATCGATTTCT-CACA
* * * ** *
1517025 ATCGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT-ATTAATTTCTCATA
1 ATCGGGGATACTCCAACCCCGACCTTATTT-CTAAATCATCGATTTCTCACA
* *
1517076 ATCGGGGATACTTCAACCTCGACCTTATTTCTAAATCATCGATTTCTCACA
1 ATCGGGGATACTCCAACCCCGACCTTATTTCTAAATCATCGATTTCTCACA
*
1517127 ATAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
1517146 TAATTTTATT
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
50 5 0.05
51 89 0.90
52 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (51 bp):
ATCGGGGATACTCCAACCCCGACCTTATTTCTAAATCATCGATTTCTCACA
Found at i:1517215 original size:232 final size:231
Alignment explanation
Indices: 1516794--1517322 Score: 599
Period size: 232 Copynumber: 2.3 Consensus size: 231
1516784 GATTTTCATC
* *
1516794 TCGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCCACGATCGGAGATACTCCA
1 TCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATCGGAGATACTCCA
** * * *
1516859 ACTCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATT
66 ACTCCGACCTTATTTCTAAAACACCAATTTTCCACAATAGGGGATACTCCAACTCCAATTTTATT
*
1516924 TCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGGTATTTCATCGGGGATACTCCA
131 TCCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCTCGGTATTTCA-CGGGGATACTCCA
*
1516989 ACCCCGACCTCA-TTTCTA-AAGCATCGATTTTCCACAA
195 ACCCCGACCTCATTTTC-AGAA-CACCGATTTTCCACAA
** * * * * *
1517026 TCGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTAA-TTTCTCATAATCGGGGATACTTC
1 TCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTC-CACAATCGGAGATACTCC
* * *
1517090 AAC-CTCGACCTTATTTCTAAATCATCGA-TTTCTCACAATAGGGGATACTCCAAC-CCTAATTT
65 AACTC-CGACCTTATTTCTAAAACACCAATTTTC-CACAATAGGGGATACTCCAACTCC-AATTT
* * *
1517152 TATTTTCAAAACACCAA-TTTTCTATAATCAGGGATACTCCAACC-CTGTTATTTTCGA-GGGGA
127 TATTTCCAAAACACCAATTTTTC-ACAATCAGGGATACTCCAACCTC-GGTA-TTTC-ACGGGGA
** * *
1517214 TACTCCAACCCCGATTTTATTTTCAGAACACCGATTTTCCATAA
188 TACTCCAACCCCGACCTCATTTTCAGAACACCGATTTTCCACAA
** * * * * *
1517258 TCGGGGATACTCCAACCCCGATTTTATTTTTAGAACACCGATTTTCCATAATCGGGGATACTCCA
1 TCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATCGGAGATACTCCA
1517323 CCCCCGTTGT
Statistics
Matches: 250, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
231 17 0.07
232 218 0.87
233 14 0.06
234 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (231 bp):
TCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATCGGAGATACTCCA
ACTCCGACCTTATTTCTAAAACACCAATTTTCCACAATAGGGGATACTCCAACTCCAATTTTATT
TCCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCTCGGTATTTCACGGGGATACTCCAA
CCCCGACCTCATTTTCAGAACACCGATTTTCCACAA
Found at i:1517224 original size:79 final size:79
Alignment explanation
Indices: 1517129--1517275 Score: 240
Period size: 79 Copynumber: 1.9 Consensus size: 79
1517119 TTCTCACAAT
* *
1517129 AGGGGATACTCCAACCCTAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAA
1 AGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCCATAATCAGGGATACTCCAA
1517194 CCCTGTTATTTTCG
66 CCCTGTTATTTTCG
* * * *
1517208 AGGGGATACTCCAACCCCGATTTTATTTTCAGAACACCGATTTTCCATAATCGGGGATACTCCAA
1 AGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCCATAATCAGGGATACTCCAA
1517273 CCC
66 CCC
1517276 CGATTTTATT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 62 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (79 bp):
AGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCCATAATCAGGGATACTCCAA
CCCTGTTATTTTCG
Found at i:1517272 original size:51 final size:51
Alignment explanation
Indices: 1517209--1517328 Score: 222
Period size: 51 Copynumber: 2.4 Consensus size: 51
1517199 TTATTTTCGA
1517209 GGGGATACTCCAACCCCGATTTTATTTTCAGAACACCGATTTTCCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAGAACACCGATTTTCCATAATC
*
1517260 GGGGATACTCCAACCCCGATTTTATTTTTAGAACACCGATTTTCCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAGAACACCGATTTTCCATAATC
*
1517311 GGGGATACTCCACCCCCG
1 GGGGATACTCCAACCCCG
1517329 TTGTTATCTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAGAACACCGATTTTCCATAATC
Found at i:1517561 original size:48 final size:48
Alignment explanation
Indices: 1517506--1517600 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
1517496 AACATTGTTA
1517506 TCACGATTATACATCATTAATCGAAAACAATCATGAGACACACTTTGC
1 TCACGATTATACATCATTAATCGAAAACAATCATGAGACACACTTTGC
1517554 TCACGATTATACATCATTAATCGAAAACAATCATGAGACACACTTTG
1 TCACGATTATACATCATTAATCGAAAACAATCATGAGACACACTTTG
1517601 ATCGTCCCTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (48 bp):
TCACGATTATACATCATTAATCGAAAACAATCATGAGACACACTTTGC
Found at i:1520828 original size:52 final size:52
Alignment explanation
Indices: 1520773--1521170 Score: 323
Period size: 52 Copynumber: 7.6 Consensus size: 52
1520763 CTCTAAAAAT
* * * *
1520773 AATGTTGCTGGCCTTGAATCATCAAATTGGCACCTTTATCATCTTTAAGTCT
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCC
* * *
1520825 AATGTCGCTGGCCTTGGATCAGCATATTGGCACCCTTACCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCC
* * * *
1520877 AATGTCGCTGGCCTAGGATCAGCATATTGGCACCCTTACCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCC
* * * * * * ** *
1520929 AATGTCACTAGCCTTAAATCAGCACATTGGCACCTTTTGTTATCTTTAAAACT
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TTTATCATCTTTAAGTCC
* * * * * * *
1520982 AATGTTGCTGGCCTCGAATAAGTACATAGGCATCC-TTATCATCCTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCA-CCTTTATCATCTTTAAGTCC
* * * * * ** * *
1521034 AATGTCTCTGGCCTTGGACCAACATATTGGCACCTTTGTTGTCCTTAAGACC
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCC
** ** * * *
1521086 AATGTCATTGGCCTTGAATCAGCACGTTGACACCTGTGTCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCC
* * * **
1521138 AGTGTTG-TAAGCCTTGAATTTGCATATTGGCAC
1 AATGTCGCT-GGCCTTGAATCAGCATATTGGCAC
1521171 ATTTGCAAAA
Statistics
Matches: 271, Mismatches: 71, Indels: 8
0.77 0.20 0.02
Matches are distributed among these distances:
51 3 0.01
52 231 0.85
53 35 0.13
54 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (52 bp):
AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCC
Found at i:1521082 original size:157 final size:156
Alignment explanation
Indices: 1520783--1521133 Score: 396
Period size: 157 Copynumber: 2.2 Consensus size: 156
1520773 AATGTTGCTG
* * * ** * * *
1520783 GCCTTGAATCATCAAATTGGCACCTTTATCATCTTTAAGTCTAATGTCGCTGGCCTTGGATCAGC
1 GCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAAACTAATGTCGCTGGCCTCGAATAAGC
* * * * *
1520848 ATATTGGCACCCTTACCATCTTTAAGTCCAATGTCGCTGGCCTAGGATCAGCATATTGGCACCCT
66 ACATAGGCACCCTTACCATCCTTAAGTCCAATGTCGCTGGCCTAGGACCAACATATTGGCACCCT
* *
1520913 TACCATCTTTAAGTCCAATGTCACTA
131 TACCATCCTTAAGACCAATGTCACTA
* * *
1520939 GCCTTAAATCAGCACATTGGCACCTTTTGTTATCTTTAAAACTAATGTTGCTGGCCTCGAATAAG
1 GCCTTGAATCAGCACATTGGCACC-TTTGTCATCTTTAAAACTAATGTCGCTGGCCTCGAATAAG
* * * * * *
1521004 TACATAGGCATCCTTATCATCCTTAAGTCCAATGTCTCTGGCCTTGGACCAACATATTGGCACCT
65 CACATAGGCACCCTTACCATCCTTAAGTCCAATGTCGCTGGCCTAGGACCAACATATTGGCACCC
**** * *
1521069 TTGTTGTCCTTAAGACCAATGTCATTG
130 TTACCATCCTTAAGACCAATGTCACTA
* * *
1521096 GCCTTGAATCAGCACGTTGACACCTGTGTCATCTTTAA
1 GCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAA
1521134 GTCCAGTGTT
Statistics
Matches: 159, Mismatches: 35, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
156 33 0.21
157 126 0.79
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.33
Consensus pattern (156 bp):
GCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAAACTAATGTCGCTGGCCTCGAATAAGC
ACATAGGCACCCTTACCATCCTTAAGTCCAATGTCGCTGGCCTAGGACCAACATATTGGCACCCT
TACCATCCTTAAGACCAATGTCACTA
Found at i:1521170 original size:209 final size:209
Alignment explanation
Indices: 1520761--1521138 Score: 465
Period size: 209 Copynumber: 1.8 Consensus size: 209
1520751 AAAATTTATC
* * * * *
1520761 ATCTCTAAAAATAATGTTGCTGGCCTTGAATCATCAAATTGGCACCTTTATCATCTTTAAGTCTA
1 ATCTCTAAAAATAATGTTGCTGGCCTCGAATAATCAAATAGGCACCTTTATCATCCTTAAGTCCA
* * * * *
1520826 ATGTCGCTGGCCTTGGATCAGCATATTGGCACCCTTACCATCTTTAAGTCCAATGTCGCTGGCCT
66 ATGTCGCTGGCCTTGGACCAACATATTGGCACCCTTACCATCCTTAAGACCAATGTCACTGGCCT
* * *
1520891 AGGATCAGCATATTGGCACCCTTACCATCTTTAAGTCCAATGTCACTAGCCTTAAATCAGCACAT
131 AGAATCAGCACATTGACACCCTTACCATCTTTAAGTCCAATGTCACTAGCCTTAAATCAGCACAT
1520956 TGGCACCTTTTGTT
196 TGGCACCTTTTGTT
* * *
1520970 ATCTTTAAAACTAATGTTGCTGGCCTCGAATAAGT-ACATAGGCATCC-TTATCATCCTTAAGTC
1 ATCTCTAAAAATAATGTTGCTGGCCTCGAATAA-TCAAATAGGCA-CCTTTATCATCCTTAAGTC
* * **** *
1521033 CAATGTCTCTGGCCTTGGACCAACATATTGGCACCTTTGTTGTCCTTAAGACCAATGTCATTGGC
64 CAATGTCGCTGGCCTTGGACCAACATATTGGCACCCTTACCATCCTTAAGACCAATGTCACTGGC
* * **
1521098 CTTGAATCAGCACGTTGACA-CCTGTGTCATCTTTAAGTCCA
129 CTAGAATCAGCACATTGACACCCT-TACCATCTTTAAGTCCA
1521139 GTGTTGTAAG
Statistics
Matches: 139, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
208 3 0.02
209 133 0.96
210 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (209 bp):
ATCTCTAAAAATAATGTTGCTGGCCTCGAATAATCAAATAGGCACCTTTATCATCCTTAAGTCCA
ATGTCGCTGGCCTTGGACCAACATATTGGCACCCTTACCATCCTTAAGACCAATGTCACTGGCCT
AGAATCAGCACATTGACACCCTTACCATCTTTAAGTCCAATGTCACTAGCCTTAAATCAGCACAT
TGGCACCTTTTGTT
Found at i:1527506 original size:159 final size:158
Alignment explanation
Indices: 1526739--1527917 Score: 647
Period size: 159 Copynumber: 7.5 Consensus size: 158
1526729 ACACCAAAAA
* * *
1526739 TCCTCATT-GGTATACATGACATTGAT-AGTTTGGCTTTGCAAGAAAAGCTCTT-TTTACCACTA
1 TCCTCATTAGG-ATACATGATATTGATGA-TTTGGCTTTGCAAGAAAAGCTTTTCTTTAAC-CTA
* * * * * * **
1526801 TTTTTCATAGAATTAAAGTTCATCTCTTC-AAT-AGGACAAACATGAATTCTCATAATAATCCCC
63 TTTTTCTTAAAATCAAAGTTTATC-CCTCAAATGA-GACAAACATGGATTCTCATAATAATCTTC
* *
1526864 ATTCTTTTC-TAGGTTAGGCACCATAAACATATTC
126 ATTCTTTTCAT-GATTAGGCACCATAAACCT-TTC
* * * ** * * * *
1526898 TTCACATTAGGATAAACAATATTAATGTTTTGG-TTTAGCAAGAAAGGCTTTTC-TT-CCCATCA
1 TCCTCATTAGGATACATGATATTGATGATTTGGCTTT-GCAAGAAAAGCTTTTCTTTAACC-T-A
* * * * * * * * * *
1526960 TTTTCCATAAAGTCTAAGTTTGTGCCTTAAATCAGACAAACATGGATTCT-AGTATTGATCTTCA
63 TTTTTCTTAAAATCAAAGTTTATCCCTCAAATGAGACAAACATGGATTCTCA-TAATAATCTTCA
* * *
1527024 TTCATTTCATGATT-GGACGCCATAAACCCCTTC
127 TTCTTTTCATGATTAGG-CACCATAAA-CCTTTC
* * * * * * *
1527057 TCCTCATTAAGATACAGGATATTGATGATTT-GCTTTCCCATGGAAAGTTTTTCTTT-ACCTCGT
1 TCCTCATTAGGATACATGATATTGATGATTTGGCTTT-GCAAGAAAAGCTTTTCTTTAACCT-AT
* * * * * *
1527120 TATCCTTAAAATCAAAGTTTATCCCTTAAATGAAACAAACATTGATTTTCATAATAATCTTCATT
64 TTTTCTTAAAATCAAAGTTTATCCCTCAAATGAGACAAACATGGATTCTCATAATAATCTTCATT
* * * ** *
1527185 CTTTTGGA-GACTAGGAACCGCAAACACATTC
129 CTTTT-CATGATTAGGCACCATAAAC-CTTTC
* ** * * * *
1527216 -CCTTCATT-GATATACATGGCATTGATGCTTTGG-TGCTGTAAGAAAAACTTTTCTTT---CTA
1 TCC-TCATTAG-GATACATGATATTGATGATTTGGCT-TTGCAAGAAAAGCTTTTCTTTAACCTA
* * * * *
1527275 TAATTTTCAATAGAATCAAAGTTTTGTCCCTCAAATGAGACAAACTATGG-TTGTCATAACAATC
63 T--TTTTC-TTAAAATCAAAG-TTTATCCCTCAAATGAGACAAAC-ATGGATTCTCATAATAATC
* * * *
1527339 TTTA-TCTTTTCTTGATTGGGCACCACAAACGCTTTC
123 TTCATTCTTTTCATGATTAGGCACCATAAAC-CTTTC
* *
1527375 TCCTCATTAGGATACATGATATTGATGCTTTGGCTTTGCAAGAAAAGCTTTTCTTTAAGCTATTT
1 TCCTCATTAGGATACATGATATTGATGATTTGGCTTTGCAAGAAAAGCTTTTCTTTAACCTATTT
* * ** * *
1527440 TTCTTAAAATCAAAGCTCATCCCTCAAATGAGACAAACATGGATTCTTGTATTAATCTCCATTCT
66 TTCTTAAAATCAAAGTTTATCCCTCAAATGAGACAAACATGGATTCTCATAATAATCTTCATTCT
* *
1527505 TTTCATGATCAGGCACCA-AAA-----A
131 TTTCATGATTAGGCACCATAAACCTTTC
* ** * * * * * * *
1527527 TCCTCATTGGGATACACAACATTGATGGTTTGGCTTTACAAGGAAACCATTTT-TTTACCCCCA-
1 TCCTCATTAGGATACATGATATTGATGATTTGGCTTTGCAAGAAAAGC-TTTTCTTTA-ACCTAT
* * * **
1527590 TTTT-TTAGAAGATCAAAGTTTATCTCTTAAATGAGACAAACATGGGTTCTCATAATAATCCCCA
64 TTTTCTTA-AA-ATCAAAGTTTATCCCTCAAATGAGACAAACATGGATTCTCATAATAATCTTCA
*
1527654 TTCTTTTCTAT-ATTAGGCACCATAAACACATTC
127 TTCTTTTC-ATGATTAGGCACCATAAAC-CTTTC
** * * * * * *
1527687 TCCTCATTAGGATACACAATACTAATGATTTGGTTTTGCAAGAATAGCTTTTC-TT--CCTCTCA
1 TCCTCATTAGGATACATGATATTGATGATTTGGCTTTGCAAGAAAAGCTTTTCTTTAACCTAT-T
* * * * * *
1527749 TTTCTTATAGAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATT-TTAGTAATGATCTTCA
65 TTTCTTA-A-AATCAAAGTTTATCCCTCAAATGAGACAAACATGGATTCTCA-TAATAATCTTCA
* * *
1527813 TTCTTTTCATGATTAGGCACCATAAGCATGTTGT
127 TTCTTTTCATGATTAGGCACCATAAACCT-TT-C
* * * * *
1527847 TCC-CATTAAGATATATGATGTT-ACTGATTT-GCTTTCGCAAGGAAAGCTTTTCTTTATGCC-A
1 TCCTCATTAGGATACATGATATTGA-TGATTTGGCTTT-GCAAGAAAAGCTTTTCTTTA-ACCTA
1527908 TTTTTCTTAA
63 TTTTTCTTAA
1527918 TATTCTTTTT
Statistics
Matches: 774, Mismatches: 183, Indels: 125
0.72 0.17 0.12
Matches are distributed among these distances:
151 3 0.00
152 50 0.06
153 68 0.09
154 5 0.01
156 3 0.00
157 7 0.01
158 64 0.08
159 453 0.59
160 104 0.13
161 10 0.01
162 5 0.01
163 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (158 bp):
TCCTCATTAGGATACATGATATTGATGATTTGGCTTTGCAAGAAAAGCTTTTCTTTAACCTATTT
TTCTTAAAATCAAAGTTTATCCCTCAAATGAGACAAACATGGATTCTCATAATAATCTTCATTCT
TTTCATGATTAGGCACCATAAACCTTTC
Found at i:1528432 original size:157 final size:160
Alignment explanation
Indices: 1528182--1528869 Score: 437
Period size: 159 Copynumber: 4.4 Consensus size: 160
1528172 CTTTTTACCA
* * * * * ** * ** * *
1528182 CCATTTTTCATAGAATCAGAGTTCATCTCTTAAACAAGACAAACATGAATTCTTGTAATATTCTC
1 CCATTTTCCATAAAATCAAAGTTCGTCTCTCAAATGAGACAAACATGGATTCTCATAACAATC-C
** * * * * * *
1528247 C-ATTCTTTTTGAGATT-GGGAACAAAAACACATTCCT-TTCATTAGGATATATGACATTAATGC
65 CTATTCTTTTCAAGATTAGGCACCATAAACACATTCCTCCTCATTAGGATACATAACATTAATGC
**
1528309 -TTTGGTGTCGCAAGAAAAGCTTTTCCTTCA-
130 TTTTACT-TCGCAAGAAAAGCTTTTCCTTCAC
** * * * **
1528339 CCATTTTTGATAGAATCAAAGTTTGTCAT-TTAAATGAGACAAATTTGGATTAC-CATAACAATC
1 CCATTTTCCATAAAATCAAAGTTCGTC-TCTCAAATGAGACAAACATGGATT-CTCATAACAATC
* * ** * * *
1528402 TCTA-TCTTTTCATGATTAGGCACCATAAACAGGTT-CTCCTCATTGGGATACATAATATTGATG
64 CCTATTCTTTTCAAGATTAGGCACCATAAACACATTCCTCCTCATTAGGATACATAACATTAATG
* *
1528465 CTTTTACTTCGCAAGAAAAGCTTTTCGTTGAC
129 CTTTTACTTCGCAAGAAAAGCTTTTCCTTCAC
* * * *
1528497 CCATTTTCCTTAAAATCAAAGTTCGTCTCTCAAATGAGACATACATGGGTTCTCATAATAATCCC
1 CCATTTTCCATAAAATCAAAGTTCGTCTCTCAAATGAGACAAACATGGATTCTCATAACAATCCC
* * ** * *
1528562 TATTTTTTTCAAGATTAGGCACCATAAACACATT-CTGCTCATT-GAGATACACGATATTGATGC
66 TATTCTTTTCAAGATTAGGCACCATAAACACATTCCTCCTCATTAG-GATACATAACATTAATGC
* * * *** *
1528625 -TTTAGTTTCACAAGAAAGGCTTTTCAACCAG
130 TTTTA-CTTCGCAAGAAAAGCTTTTCCTTCAC
* * * * * **
1528656 CCATTTTCCATAGAGTCTAAGTTCGTGC-CTCTAATGAGACAAATATGGATTCT-AGTAATGAT-
1 CCATTTTCCATAAAATCAAAGTTCGT-CTCTCAAATGAGACAAACATGGATTCTCA-TAACAATC
* ** * * * *
1528718 CTTCATTCTTTTCCTGATTGGGCACCATAAACACATT-CTCCTCATTAGGATACATGA-TTTGA-
64 CCT-ATTCTTTTCAAGATTAGGCACCATAAACACATTCCTCCTCATTAGGATACATAACATTAAT
* * * *
1528780 GATTTT-CTTTCACAAGCAAA-CTTTT-CTTCGCC
128 GCTTTTAC-TTCGCAAGAAAAGCTTTTCCTTC-AC
* * * *
1528812 CCATTTTCCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAA
1 CCATTTTCCATAAAATCAAAGTTCGTCTCTCAAATGAGACAAACATGGATTCTCATAA
1528870 TAGGCTCCAT
Statistics
Matches: 417, Mismatches: 93, Indels: 43
0.75 0.17 0.08
Matches are distributed among these distances:
155 2 0.00
156 64 0.15
157 114 0.27
158 72 0.17
159 163 0.39
160 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (160 bp):
CCATTTTCCATAAAATCAAAGTTCGTCTCTCAAATGAGACAAACATGGATTCTCATAACAATCCC
TATTCTTTTCAAGATTAGGCACCATAAACACATTCCTCCTCATTAGGATACATAACATTAATGCT
TTTACTTCGCAAGAAAAGCTTTTCCTTCAC
Found at i:1528860 original size:156 final size:157
Alignment explanation
Indices: 1528352--1529872 Score: 568
Period size: 159 Copynumber: 9.8 Consensus size: 157
1528342 TTTTTGATAG
* ** ** * *
1528352 AATCAAAGTTTGTCATTTAAATGAGACAAATTTGGATTAC-CATAACAATCTCTA-TCTTTTCAT
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATT-CTCATAATAATCCCTATTCTTTTCAT
** * *
1528415 GATTAGGCACCATAAACAGGTTCTCCTCATTGGGATACATAATATTGATGCTTTTAC-TTCGCAA
65 GATTAGGCACCATAAACACATTCTCCTCATT-GGATACATGATATTGATGCTTTT-CTTTCACAA
*
1528479 GAAAAGCTTTTCGTT-GACCCATTTTCCTTAA
128 G-AAAGCTTTTC-TTCGCCCCATTTTCCTTAA
* * * * * *
1528510 AATCAAAGTTCGTCTCTCAAATGAGACATACATGGGTTCTCATAATAATCCCTATTTTTTTCAAG
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTCTCATAATAATCCCTATTCTTTTCATG
* * **
1528575 ATTAGGCACCATAAACACATTCTGCTCATTGAGATACACGATATTGATGCTTTAGTTTCACAAGA
66 ATTAGGCACCATAAACACATTCTCCTCATTG-GATACATGATATTGATGCTTTTCTTTCACAAGA
** * * *
1528640 AAGGCTTTTCAAC-CAGCCATTTTCCATAG
130 AA-GCTTTTCTTCGC-CCCATTTTCCTTAA
* * * * * *
1528669 AGTCTAAGTTCGTGCCTCT-AATGAGACAAATATGGATTCT-AGTAATGAT-CTTCATTCTTTTC
1 AATCAAAGTTCGTCCCT-TAAATGAGACAAACATGGATTCTCA-TAATAATCCCT-ATTCTTTTC
* * *
1528731 CTGATTGGGCACCATAAACACATTCTCCTCATTAGGATACATGAT-TTGA-GATTTTCTTTCACA
63 ATGATTAGGCACCATAAACACATTCTCCTCATT-GGATACATGATATTGATGCTTTTCTTTCACA
1528794 AGCAAA-CTTTTCTTCGCCCCATTTTCCTTAA
127 AG-AAAGCTTTTCTTCGCCCCATTTTCCTTAA
* ** *
1528825 AATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAGGCTCC-ATTCTGTTCGA
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTCTCATAATAATC-CCTATTCTTTTC-A
* * * * * * ****
1528889 -GA-T-GGGAACA-AAA-ACATGT-TACCTTTATTGGGATACTTGACATTGCTGCTTTGGGGTCA
64 TGATTAGGCACCATAAACACAT-TCT-CC-TCATT-GGATACATGATATTGATGCTTTTCTTTCA
** * ** *
1528948 CAAGAAAAATTTTTCTATC-CACCATTTTCGATAG
125 CAAG-AAAGCTTTTCT-TCGCCCCATTTTCCTTAA
* * * * * * * * * *
1528982 TATCAAAGTTTGTCTCTCAAATGACACAAACTTGGATTGTCATAACAATGTCC-A-TCTTTTCAA
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTCTCATAATAAT-CCCTATTCTTTTCAT
** * * *
1529045 GATTAGGCTGCATAAACACCTTCTCCTCATT-GAT--AT--TA---ATGCTTTGTCTTTGA-ATG
65 GATTAGGCACCATAAACACATTCTCCTCATTGGATACATGATATTGATGCTTT-TCTTTCACAAG
* * * *
1529101 AAAAGCTTTTGTTTGACCTATTTTCCTTAA
129 -AAAGCTTTTCTTCGCCCCATTTTCCTTAA
* ** *
1529131 AATCAAAGATT-G-CCCTTTGAATGAGACAAACATGGATTCTTGTAATAATCGC-ATTCTTTTCA
1 AATCAAAG-TTCGTCCC-TTAAATGAGACAAACATGGATTCTCATAATAATCCCTATTCTTTTCA
* * * * * * * *
1529193 TGATTCGGCACC--AAA-A-A---TCCTCTTTGGGAT--A-GACATTAATGGTTTGGC-TTAATA
64 TGATTAGGCACCATAAACACATTCTCCTCATT-GGATACATGATATTGATGCTTT-TCTTTCACA
** * * * *
1529247 AGGAAAGCTTTT-TTATCTCTATTTAT-CATAG
127 A-GAAAGCTTTTCTTCGCCCCATTT-TCCTTAA
* * * * * * * * * *
1529278 AATCGATGTTAGTCTCTTAAATGAGACCAACATGAATTCTTATAGTAATCCCTATTTTTTTCAAG
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTCTCATAATAATCCCTATTCTTTTCATG
* * * * * ** *** *
1529343 ATTAGGCACCATAAACACATACTTCTCATTAGGAAACATGAAATTGATTCTTTGGTTTTGGAATA
66 ATTAGGCACCATAAACACATTCTCCTCATT-GGATACATGATATTGATGCTTTTCTTTCACAAGA
* * * * * * ** *
1529408 TAGGATTTTCTTCTCACTATTTTTCACAG
130 -AAGCTTTTCTTCGCCCCATTTTCCTTAA
* ** * * * * ** * *
1529437 AGTTTAAGTTCATACCTCAAATAAGACAAA-ATGGATTCT-AGTAAGGAT-CTTCATTCTTTTCG
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTCTCA-TAATAATCCCT-ATTCTTTTCA
* * ** * * * *
1529499 TGATTAGGCACTACAAACAGGTTCTCCTCATTATGG-TACATGATGTTGATGATTTGCTTTCGCA
64 TGATTAGGCACCATAAACACATTCTCCTCA-T-TGGATACATGATATTGATGCTTTTCTTTCACA
* * * *
1529563 AGGCAAGCTTTTCTTTGCCCCTTTTTCTTTAA
127 A-GAAAGCTTTTCTTCGCCCCATTTTCCTTAA
* * * * * ** * **
1529595 AATCAAAGTTCATCCCTTAAATGTGACAAGCATGGATTCTTGA-AATAGTCTATGTTCTTTTTGT
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTC-TCATAATAATCCCTATTCTTTTCAT
* * * * ** ** *
1529659 GATTAGGAACCAAAAACAAATTC-CCTTCATTGGGAT-GATGATATTGATGCTTTGGTGCCACAG
65 GATTAGGCACCATAAACACATTCTCC-TCATT-GGATACATGATATTGATGCTTTTCTTTCACAA
* * * *
1529722 GAAAAACTTTT-GTC-CACCATTTT-TTATAA
128 G-AAAGCTTTTCTTCGCCCCATTTTCCT-TAA
* * * * * * * * *
1529751 AATCAAAGTTTGACCATCAAATAAGACAAACTTGGATTGC-CATAACAATCTCC-A-TCTCTTCT
1 AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATT-CTCATAATAATC-CCTATTCTTTTCA
* * * * * *
1529813 TGATCAAGCACCATAAACACATTCTTCTCATTAGGATACATGTTGTTGATGATTTTCTTT
64 TGATTAGGCACCATAAACACATTCTCCTCATT-GGATACATGATATTGATGCTTTTCTTT
1529873 TGCAAGATGA
Statistics
Matches: 991, Mismatches: 289, Indels: 168
0.68 0.20 0.12
Matches are distributed among these distances:
142 7 0.01
144 4 0.00
145 1 0.00
146 3 0.00
147 54 0.05
148 45 0.05
149 76 0.08
150 7 0.01
151 1 0.00
152 7 0.01
153 6 0.01
154 19 0.02
155 51 0.05
156 149 0.15
157 85 0.09
158 221 0.22
159 246 0.25
160 8 0.01
161 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
AATCAAAGTTCGTCCCTTAAATGAGACAAACATGGATTCTCATAATAATCCCTATTCTTTTCATG
ATTAGGCACCATAAACACATTCTCCTCATTGGATACATGATATTGATGCTTTTCTTTCACAAGAA
AGCTTTTCTTCGCCCCATTTTCCTTAA
Found at i:1534909 original size:42 final size:42
Alignment explanation
Indices: 1534854--1534972 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1534844 TTCTTCTCTC
* *
1534854 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1534896 CTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1534938 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1534973 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1537901 original size:58 final size:57
Alignment explanation
Indices: 1537811--1537920 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 57
1537801 AAGAATAAAG
* * *
1537811 CTTGGAGCCCAATTCATATGTCCAAGAAGAGTGAAGCCTAATTTGCATGTATTCAAGA
1 CTTGGAGCCCAATTCACATGTCCAAGAAGAGTGAAGCCCAATTT-CATATATTCAAGA
*
1537869 CTTGGAGCCCAATTCACATGTCCAAGAAGAGTGGAGCCCAATTTCATATATT
1 CTTGGAGCCCAATTCACATGTCCAAGAAGAGTGAAGCCCAATTTCATATATT
1537921 TATGGGCCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
57 7 0.15
58 41 0.85
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (57 bp):
CTTGGAGCCCAATTCACATGTCCAAGAAGAGTGAAGCCCAATTTCATATATTCAAGA
Found at i:1537903 original size:29 final size:29
Alignment explanation
Indices: 1537813--1537911 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
1537803 GAATAAAGCT
*
1537813 TGGAGCCCAATTCATATGTCCAAGAAGAG
1 TGGAGCCCAATTCACATGTCCAAGAAGAG
* * ** * **
1537842 TGAAGCCTAATTTGCATGTATTCAAG-A-CT
1 TGGAGCCCAATTCACATG--TCCAAGAAGAG
1537871 TGGAGCCCAATTCACATGTCCAAGAAGAG
1 TGGAGCCCAATTCACATGTCCAAGAAGAG
1537900 TGGAGCCCAATT
1 TGGAGCCCAATT
1537912 TCATATATTT
Statistics
Matches: 51, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
27 5 0.10
28 1 0.02
29 39 0.76
30 1 0.02
31 5 0.10
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (29 bp):
TGGAGCCCAATTCACATGTCCAAGAAGAG
Done.