Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold350
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1036165
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 5 of 8
Found at i:591108 original size:19 final size:18
Alignment explanation
Indices: 591047--591110 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
591037 TAGCGATACA
*
591047 TTGTATCGATACAAAACTT
1 TTGTATCGATACAACAC-T
591066 TTGTATCGAT---ACA--
1 TTGTATCGATACAACACT
*
591079 TTGTATTGATACAACACT
1 TTGTATCGATACAACACT
591097 TATGTATCGATACA
1 T-TGTATCGATACA
591111 TTGTATCGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
13 9 0.25
16 5 0.14
18 1 0.03
19 21 0.58
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (18 bp):
TTGTATCGATACAACACT
Found at i:591902 original size:53 final size:51
Alignment explanation
Indices: 591813--592127 Score: 343
Period size: 49 Copynumber: 6.1 Consensus size: 51
591803 AAAGATGAGA
* * ** * * *
591813 AAAAGGATGTCAATGTGCTGATTCACGGTTAGCGACATTTAGACTTGAGGATG
1 AAAAGG-TGCCAATGTGCTGATTCAAGGCCAGCGACA-TTGGACTTAAAGATG
* * **
591866 AAAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATG
1 AAAAG-GTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATG
* * *
591919 ACGAAGGTGCCAA-GATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATG
1 A-AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
*
591971 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACG
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
592020 ACAAAGGTGCCAATATGCTGATTGAAGGCCAGCGATATTGGACTTAAAGATG
1 A-AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* *
592072 --AAGGTGCCAAAGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATG
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
592121 ACAAAGG
1 A-AAAGG
592128 CGGACTTAAA
Statistics
Matches: 223, Mismatches: 28, Indels: 23
0.81 0.10 0.08
Matches are distributed among these distances:
49 88 0.39
50 1 0.00
52 64 0.29
53 67 0.30
54 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (51 bp):
AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
Found at i:592050 original size:101 final size:101
Alignment explanation
Indices: 591873--592127 Score: 411
Period size: 101 Copynumber: 2.5 Consensus size: 101
591863 ATGAAAAGAA
* ** *
591873 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGTGCCAAGATGCT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGACAAAGGTGCCAAGATGCT
*
591938 GATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGG
65 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
591975 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACGACAAAGGTGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAAGATGCTG
*
592040 ATTGAAGGCCAGCGATATTGGACTTAAAGATGAAGG
66 ATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
592076 TGCCAAAGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGG
592128 CGGACTTAAA
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 111 0.78
102 31 0.22
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (101 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAAGATGCTG
ATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:592176 original size:70 final size:70
Alignment explanation
Indices: 592059--592198 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
592049 CAGCGATATT
*
592059 GGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGACA
1 GGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACA
592124 AAGGC
66 AAGGC
*
592129 GGACTTAAAGATTAAGGTGCCAAAGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACA
1 GGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACA
592194 AAGGC
66 AAGGC
592199 ACCAATATGC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (70 bp):
GGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACA
AAGGC
Found at i:592217 original size:52 final size:52
Alignment explanation
Indices: 592154--593657 Score: 2159
Period size: 52 Copynumber: 29.5 Consensus size: 52
592144 GGTGCCAAAG
* *
592154 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCACCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
*
592206 TGCTGATTCAAGGCCAGGGATATTGGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592258 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592307 TGCTGATTCAAGGCCAGGGACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
592359 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592411 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * *
592460 TGCTGATTCAAGGCCAGTGAGATTGGTCTTAAAGATGACAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592512 TGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592564 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
*
592613 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592665 TGCTGATTCAAGGCCAGCGATATTGGACTTAAATATGACAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * *
592717 TGCTGATTCAAGGCCAACGATATTGGCCTTAAAGATG---AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * *
592766 TGCTGATTCAAGGCCAGCGAGATTGGTCTTAAAGATGACAAAGACACCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592818 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGCCGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
** *
592870 TGCTGATTCAAGGCCAGCGACGTTAGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
*
592922 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
592974 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
*
593023 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
*
593075 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * * *
593127 TGCTGATTCAAGGCCAGCAATATTGGACTTCAAGATG---AATGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * *
593176 TGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGATAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
593228 TGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATGATAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * *
593280 TGCTGATTCAAGGCCAGCGATATTGGACTTCAAGATG---AATGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
** * * *
593329 TGCTGATTCAAGGCCAATGACATTGGTCTTAAAGATGATAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
593381 TGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATG---AAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * *
593430 TGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGACAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
*
593482 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCACCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
593534 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* * *
593583 TGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
* *
593632 TGCTGATTCAAGACCATCGATATTGG
1 TGCTGATTCAAGGCCAGCGATATTGG
593658 GCATAAAAGA
Statistics
Matches: 1310, Mismatches: 115, Indels: 57
0.88 0.08 0.04
Matches are distributed among these distances:
46 1 0.00
47 1 0.00
48 2 0.00
49 425 0.32
52 881 0.67
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (52 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
Found at i:592298 original size:223 final size:220
Alignment explanation
Indices: 591922--592352 Score: 711
Period size: 223 Copynumber: 1.9 Consensus size: 220
591912 AAAGATGACG
* * ** *
591922 AAGGTGCCAAGATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAAGATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGCACCAATATGCT
* *
591987 GATTCAAGGCCAGCGACATTGGACTTAAAGACGACAAAGGTGCCAATATGCTGATTGAAGGCCAG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGACGACAAAGGCGCCAATATGCTGATTCAAGGCCAG
*
592052 CGATATTGGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGTGACATTGGACTTAAA
131 CGATATTGGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGGGACATTGGACTTAAA
592117 GATGACAAAGGCGGACTTAAAGATT
196 GATGACAAAGGCGGACTTAAAGATT
592142 AAGGTGCCAA-AGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCACCAATA
1 AAGGTGCCAAGA-TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGCACCAATA
* * *
592206 TGCTGATTCAAGGCCAGGGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGG
62 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACGACAAAGGCGCCAATATGCTGATTCAAGG
*
592271 CCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGGGACATTGGACT
127 CCAGCGATATTGGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGGGACATTGGACT
592336 TAAAGATGACAAAGGCG
192 TAAAGATGACAAAGGCG
592353 CCAATATGCT
Statistics
Matches: 195, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
219 1 0.01
220 45 0.23
223 149 0.76
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (220 bp):
AAGGTGCCAAGATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGCACCAATATGCT
GATTCAAGGCCAGCGACATTGGACTTAAAGACGACAAAGGCGCCAATATGCTGATTCAAGGCCAG
CGATATTGGACTTAAAGATGAAGGTGCCAAAGTGCTGATTCAAGGCCAGGGACATTGGACTTAAA
GATGACAAAGGCGGACTTAAAGATT
Found at i:592371 original size:153 final size:154
Alignment explanation
Indices: 592129--593657 Score: 2188
Period size: 153 Copynumber: 10.0 Consensus size: 154
592119 TGACAAAGGC
* * *
592129 GGACTTAAAGAT-TAAGGTGCCAA-AGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
1 GGACTTAAAGATGAAAGGCGCCAATA-TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * *
592192 CAAAGGCACCAATATGCTGATTCAAGGCCAGGGATATTGGACTTAAAGATGACAAAGGCGCCAAT
65 CAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAAT
592257 ATGCTGATTCAAGGCCAGCGATATT
130 ATGCTGATTCAAGGCCAGCGATATT
* * * *
592282 GGACTTAAAGATG-AAGGTGCCAATGTGCTGATTCAAGGCCAGGGACATTGGACTTAAAGATGAC
1 GGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAC
*
592346 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATA
66 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
592411 TGCTGATTCAAGGCCAGCGATATT
131 TGCTGATTCAAGGCCAGCGATATT
* * * * *
592435 GGACTTAAAGATG-AAGGTGCCAATGTGCTGATTCAAGGCCAGTGAGATTGGTCTTAAAGATGAC
1 GGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAC
* *
592499 AAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
66 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
592564 TGCTGATTCAAGGCCAGCGATATT
131 TGCTGATTCAAGGCCAGCGATATT
* * *
592588 GGACTTAAAGATG-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAC
1 GGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAC
*
592652 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAATATGACAAAGGTGCCAATA
66 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
*
592717 TGCTGATTCAAGGCCAACGATATT
131 TGCTGATTCAAGGCCAGCGATATT
* * * * *
592741 GGCCTTAAAGATG-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGAGATTGGTCTTAAAGATGAC
1 GGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAC
* * ** *
592805 AAAGACACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGCCGCCAATG
66 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
**
592870 TGCTGATTCAAGGCCAGCGACGTT
131 TGCTGATTCAAGGCCAGCGATATT
* *
592894 AGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATG
1 GGACTTAAAGATG--AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
592959 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAA
64 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAA
* *
593021 TGTGCTGATTCAAGGCCAGCGACATT
129 TATGCTGATTCAAGGCCAGCGATATT
593047 GGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 GGACTTAAAGATG--AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * *
593112 ATAAAGGCGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTCAAGATG---AATGTGCCAA
64 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAA
* * *
593174 TGTGCTGATTCAAGGCCAACGACATT
129 TATGCTGATTCAAGGCCAGCGATATT
* *
593200 GGTCTTAAAGATGATAAAGGCGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATG
1 GGACTTAAAGATG--AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
593265 ATAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTCAAGATG---AATGTGCCAA
64 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAA
* ** *
593327 TGTGCTGATTCAAGGCCAATGACATT
129 TATGCTGATTCAAGGCCAGCGATATT
* *
593353 GGTCTTAAAGATGATAAAGGCGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATG
1 GGACTTAAAGATG--AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
593418 ---AAGGTGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGACAAAGGTGCCAA
64 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAA
593480 TATGCTGATTCAAGGCCAGCGATATT
129 TATGCTGATTCAAGGCCAGCGATATT
*
593506 GGACTTAAAGATGACAAAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 GGACTTAAAGATG--AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * *
593571 ---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAAGGTGCCAA
64 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAA
* *
593630 TATGCTGATTCAAGACCATCGATATT
129 TATGCTGATTCAAGGCCAGCGATATT
593656 GG
1 GG
593658 GCATAAAAGA
Statistics
Matches: 1297, Mismatches: 71, Indels: 19
0.94 0.05 0.01
Matches are distributed among these distances:
150 85 0.07
151 1 0.00
152 2 0.00
153 1115 0.86
156 94 0.07
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (154 bp):
GGACTTAAAGATGAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAC
AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
TGCTGATTCAAGGCCAGCGATATT
Found at i:593705 original size:30 final size:31
Alignment explanation
Indices: 593671--593745 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
593661 TAAAAGAAGA
* *
593671 TGCCACCAACTTGTGTGGGCTTTTG-AAGGT
1 TGCCACTAACTTGTGTGGGCTTTTGAAAGGG
*
593701 TGCCACTAAC-T-TGTGGGTTTTTGAAAAGGG
1 TGCCACTAACTTGTGTGGGCTTTTG-AAAGGG
593731 TGCCACTAACTTGTG
1 TGCCACTAACTTGTG
593746 GGCTTAACAG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
28 11 0.29
29 1 0.03
30 23 0.61
31 1 0.03
32 2 0.05
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (31 bp):
TGCCACTAACTTGTGTGGGCTTTTGAAAGGG
Found at i:593724 original size:28 final size:29
Alignment explanation
Indices: 593684--593750 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 29
593674 CACCAACTTG
*
593684 TGTGGGCTTTTG-AAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGGTGCCACTAACT
*
593712 TGTGGGTTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTTG-AAAGGGTGCCACTAACT
593742 TGTGGGCTT
1 TGTGGGCTT
593751 AACAGGAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 11 0.32
30 23 0.68
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGGTGCCACTAACT
Found at i:593802 original size:34 final size:34
Alignment explanation
Indices: 593741--594093 Score: 423
Period size: 34 Copynumber: 10.4 Consensus size: 34
593731 TGCCACTAAC
* *
593741 TTGTGGGCTTAACAGGAGA-AA-GATGCCACGGAG
1 TTGTGGACTTAAAAGGA-ACAAGGATGCCACGGAG
* *
593774 TTATGGACTTAAAAGGAACAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* *
593808 TTGTTGACTTAAAAAGAACAAGGATGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
*
593842 TTGTGGACTTAAAAGGAACAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
*
593876 TTGTGGACTTAAAAAGGAACAAGGATGCCATGGAG
1 TTGTGGACTT-AAAAGGAACAAGGATGCCACGGAG
593911 TTGTGGACTTAAAAGGAACAAGG-TGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* * * *
593944 GTGTGGGCTTAAAAAGGAAAAAGGGTGCCACGGAG
1 TTGTGGACTT-AAAAGGAACAAGGATGCCACGGAG
*
593979 TCGTGGACTTAAAAGGAA-AAGG-TGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* *
594011 TTGTGGACTTTAAAAGGAAAAAGG-TGCCACAGAG
1 TTGTGGAC-TTAAAAGGAACAAGGATGCCACGGAG
* * * *
594045 GTATGGGCTTAAAAGGGAA-AAAGAGTGCCACGGAG
1 TTGTGGACTTAAAA-GGAACAAGGA-TGCCACGGAG
*
594080 TCGTGGACTTAAAA
1 TTGTGGACTTAAAA
594094 AGGTGCCATG
Statistics
Matches: 279, Mismatches: 31, Indels: 18
0.85 0.09 0.05
Matches are distributed among these distances:
32 18 0.06
33 56 0.20
34 137 0.49
35 68 0.24
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (34 bp):
TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
Found at i:593992 original size:27 final size:28
Alignment explanation
Indices: 593962--594027 Score: 71
Period size: 32 Copynumber: 2.2 Consensus size: 28
593952 TTAAAAAGGA
593962 AAAAGGGTGCCACGGAGTCGTGGAC-TT
1 AAAAGGGTGCCACGGAGTCGTGGACTTT
*
593989 AAAAGGAAAAGGTGCCACGGAGTTGTGGACTTT
1 AAAA-G----GGTGCCACGGAGTCGTGGACTTT
594022 AAAAGG
1 AAAAGG
594028 AAAAAGGTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
27 4 0.12
28 2 0.06
32 20 0.62
33 6 0.19
ACGTcount: A:0.33, C:0.14, G:0.35, T:0.18
Consensus pattern (28 bp):
AAAAGGGTGCCACGGAGTCGTGGACTTT
Found at i:594136 original size:29 final size:29
Alignment explanation
Indices: 594062--594185 Score: 121
Period size: 29 Copynumber: 4.3 Consensus size: 29
594052 CTTAAAAGGG
* *
594062 AAAAAGAGTGCCACGGAGTCGTGGAC-TT
1 AAAAAGAGTGCCATGGAGTTGTGGACTTT
*
594090 AAAAAG-GTGCCATGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCATGGAGTTGTGGACTTT
*
594118 AAAAAGAGTGCCATAGAGTTGTGGACTTT
1 AAAAAGAGTGCCATGGAGTTGTGGACTTT
**
594147 GAAGAAA-AGATGCCACT-GAGTCATGGACTTT
1 -AA-AAAGAG-TGCCA-TGGAGTTGTGGACTTT
*
594178 GAAAAGAG
1 AAAAAGAG
594186 ATTTGAAGAA
Statistics
Matches: 81, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
27 16 0.20
28 14 0.17
29 23 0.28
30 7 0.09
31 20 0.25
32 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.23
Consensus pattern (29 bp):
AAAAAGAGTGCCATGGAGTTGTGGACTTT
Found at i:598954 original size:52 final size:52
Alignment explanation
Indices: 598876--599005 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
598866 CGAAATATGA
* *
598876 AAATTTGCCTGCATGTATCGATACATTTCGTAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTGGGC
* *
598928 AAATTTGCCTGTATGTATTGATACATTTCATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTGGGC
598980 AAATTTGCCTGCATGTATCGATACAT
1 AAATTTGCCTGCATGTATCGATACAT
599006 AAGTTTTATA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTGGGC
Found at i:599113 original size:19 final size:18
Alignment explanation
Indices: 599089--599151 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
599079 AGTGATACAT
599089 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
599108 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
599121 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
599140 TGTATCGATACA
1 TGTATCGATACA
599152 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:599123 original size:32 final size:32
Alignment explanation
Indices: 599082--599165 Score: 159
Period size: 32 Copynumber: 2.6 Consensus size: 32
599072 GCTTCGTAGT
599082 GATACATTGTATCGATACAAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
*
599114 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
599146 GATACATTGTATCGATACAA
1 GATACATTGTATCGATACAA
599166 GTAGTTGAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGTATC
Found at i:599126 original size:13 final size:13
Alignment explanation
Indices: 599108--599164 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
599098 ACAAAACTTA
599108 TGTATCGATACAT
1 TGTATCGATACAT
599121 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
599139 ATGTATCGATACAT
1 -TGTATCGATACAT
599153 TGTATCGATACA
1 TGTATCGATACA
599165 AGTAGTTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:601807 original size:58 final size:58
Alignment explanation
Indices: 601707--601818 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
601697 TAGGCCCATA
* * * ** **
601707 AATATATGCAAATTGGGCTCCACTCTTCTTGGATATGTGAATTGGGCTCCAAGCGATG
1 AATACATGCAAATTAGGCTCCACTCTTCTTGGACATACGAATTAAGCTCCAAGCGATG
* *
601765 AATACATGCAAATTAGGCTTCACTCTTTTTGGACATACGAATTAAGCTCCAAGC
1 AATACATGCAAATTAGGCTCCACTCTTCTTGGACATACGAATTAAGCTCCAAGC
601819 TTACAAATTA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (58 bp):
AATACATGCAAATTAGGCTCCACTCTTCTTGGACATACGAATTAAGCTCCAAGCGATG
Found at i:602261 original size:58 final size:58
Alignment explanation
Indices: 602164--602280 Score: 155
Period size: 58 Copynumber: 2.0 Consensus size: 58
602154 GAAGAATAAA
* * *
602164 GCTTGAAGCCCAATTCGCATGTCCAAGTAGAGTAAAGCCCAATTTGCATATATTCATG
1 GCTTGAAGCCCAATTCACATGTCCAAGTAGAGTAAAGCCCAATTTCCACATATTCATG
* ** *
602222 GCTTGGAGCCCAATTCACATGTCCAAG-ATGAGTGGAGCCCAATTTCCACATATTTATG
1 GCTTGAAGCCCAATTCACATGTCCAAGTA-GAGTAAAGCCCAATTTCCACATATTCATG
602280 G
1 G
602281 GGCCTATTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 1 0.02
58 50 0.98
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (58 bp):
GCTTGAAGCCCAATTCACATGTCCAAGTAGAGTAAAGCCCAATTTCCACATATTCATG
Found at i:605144 original size:22 final size:22
Alignment explanation
Indices: 605116--605158 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
605106 TACTTATTAC
*
605116 AGTGGTATGTACTTATTGTTAA
1 AGTGGTATGTACATATTGTTAA
605138 AGTGGTATGTACATATTGTTA
1 AGTGGTATGTACATATTGTTA
605159 TACTTATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (22 bp):
AGTGGTATGTACATATTGTTAA
Found at i:607946 original size:17 final size:17
Alignment explanation
Indices: 607926--607978 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 17
607916 TTGTTTTCCT
607926 TTTTTTTCTATTTTTTG
1 TTTTTTTCTATTTTTTG
607943 TTTTTTT-TAGTTTTTTG
1 TTTTTTTCTA-TTTTTTG
607960 TTATTTTTACTATTATTTT
1 TT-TTTTT-CTATT-TTTT
607979 TATACCAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.06
17 16 0.52
18 5 0.16
19 2 0.06
20 6 0.19
ACGTcount: A:0.11, C:0.04, G:0.06, T:0.79
Consensus pattern (17 bp):
TTTTTTTCTATTTTTTG
Found at i:612627 original size:13 final size:13
Alignment explanation
Indices: 612609--612634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
612599 ACAATTCTTC
612609 ATGTATCGATACA
1 ATGTATCGATACA
612622 ATGTATCGATACA
1 ATGTATCGATACA
612635 TTGTCCCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:612633 original size:33 final size:33
Alignment explanation
Indices: 612588--612656 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
612578 TGTTGGGCAT
* *
612588 AATGTATTGATACAATTCT-TCATGTATCGATAC
1 AATGTATCGATAC-ATTCTCCCATGTATCGATAC
*
612621 AATGTATCGATACATTGTCCCATGTATCGATAC
1 AATGTATCGATACATTCTCCCATGTATCGATAC
612654 AAT
1 AAT
612657 TGAGTATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 4 0.12
33 28 0.88
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.36
Consensus pattern (33 bp):
AATGTATCGATACATTCTCCCATGTATCGATAC
Found at i:612665 original size:20 final size:20
Alignment explanation
Indices: 612622--612695 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
612612 TATCGATACA
**
612622 ATGTATCGATAC-ATTGTCCC
1 ATGTATCGATACAATTG-AAC
**
612642 ATGTATCGATACAATTGAGT
1 ATGTATCGATACAATTGAAC
*
612662 ATGTATCTATACAA-TGAAC
1 ATGTATCGATACAATTGAAC
612681 ATGTATCGATACAAT
1 ATGTATCGATACAAT
612696 ATATCGATAC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
19 16 0.36
20 25 0.56
21 4 0.09
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATTGAAC
Found at i:616343 original size:13 final size:13
Alignment explanation
Indices: 616325--616350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
616315 CAATTTTTTG
616325 TGTATCGATACAT
1 TGTATCGATACAT
616338 TGTATCGATACAT
1 TGTATCGATACAT
616351 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:617091 original size:21 final size:21
Alignment explanation
Indices: 617050--617093 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
617040 CTCTCCTTTA
* *
617050 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
617071 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
617092 TC
1 TC
617094 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:620360 original size:23 final size:23
Alignment explanation
Indices: 620333--620388 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
620323 AGCCTTTGAC
620333 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
620356 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
620378 CATGCATTTTT
1 CATGCATTTTT
620389 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:620395 original size:20 final size:21
Alignment explanation
Indices: 620341--620395 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
620331 ACCATGCATT
**
620341 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
620362 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
620384 -TTTTTAACATGT
1 TTTTTTAACATGT
620396 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:626561 original size:21 final size:21
Alignment explanation
Indices: 626537--626583 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
626527 AAGTGAAAAG
626537 AAAAAGTGCAAAAAC-AAAATAA
1 AAAAAG-G-AAAAACAAAAATAA
*
626559 AAAAAGGAACAACAAAAATAA
1 AAAAAGGAAAAACAAAAATAA
626580 AAAA
1 AAAA
626584 TGAGGACATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 12 0.52
22 6 0.26
ACGTcount: A:0.77, C:0.09, G:0.09, T:0.06
Consensus pattern (21 bp):
AAAAAGGAAAAACAAAAATAA
Found at i:627975 original size:27 final size:27
Alignment explanation
Indices: 627898--628636 Score: 1156
Period size: 27 Copynumber: 27.0 Consensus size: 27
627888 TGGCATTTCT
*
627898 TTTTGAAGTCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
627926 TTTTAAAGTCCACAACTCTGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
* *
627954 TTTTAAATCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
627981 TTTTAAAGTCCACAACTCCGTGGCACTC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
628009 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
628037 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
** *
628064 TTCAAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628091 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
628119 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
628145 TTTCAAAGTCCACAACTCCGTGGCACCC
1 TTT-TAAGTCCACAACTCCGTGGCACCC
* ** *
628173 TTTTAAGTCCACAACTCCGTAGTGCTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628200 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
628228 TTTTTAAGTCCACAACTCCGTGGCACCC
1 -TTTTAAGTCCACAACTCCGTGGCACCC
628256 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
*
628284 TTTTAAGTCCACAACTCCGTGGCATCTC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
628312 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
628339 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
628366 TTTTAAGTCCACAACTCCGTAGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
628393 TTTTAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628420 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628447 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628474 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628501 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
* *
628529 TTTTAAGACCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628556 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
628583 TTTTAAGTCCACAACTCCGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
628610 TTTTAAATCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
628637 ATTTCAAAGC
Statistics
Matches: 659, Mismatches: 44, Indels: 17
0.92 0.06 0.02
Matches are distributed among these distances:
26 5 0.01
27 416 0.63
28 234 0.36
29 4 0.01
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:628674 original size:32 final size:32
Alignment explanation
Indices: 628619--629124 Score: 852
Period size: 32 Copynumber: 15.8 Consensus size: 32
628609 CTTTTAAATC
* *
628619 CACAACTCTGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
628650 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
628682 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
628714 CACAAGTCAGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
628746 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
628778 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
628810 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
628842 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
628874 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
628906 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
628938 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
628970 CACAAGTCTGTGGCAATCCATTTCAAAACCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
629002 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
629034 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
629066 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** * *
629098 TGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
629125 TCACCATTTT
Statistics
Matches: 450, Mismatches: 24, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
31 12 0.03
32 438 0.97
ACGTcount: A:0.32, C:0.35, G:0.18, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:630213 original size:25 final size:25
Alignment explanation
Indices: 630179--630236 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 25
630169 AGCCTTTGAC
630179 CATGCATTTTTTTTTTATTATGTTT
1 CATGCATTTTTTTTTTATTATGTTT
630204 CATGCA---TTTTTTTATTATGTTT
1 CATGCATTTTTTTTTTATTATGTTT
630226 CATGCATTTTT
1 CATGCATTTTT
630237 AACATGTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 22 0.73
25 8 0.27
ACGTcount: A:0.17, C:0.10, G:0.09, T:0.64
Consensus pattern (25 bp):
CATGCATTTTTTTTTTATTATGTTT
Found at i:630216 original size:22 final size:22
Alignment explanation
Indices: 630188--630236 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
630178 CCATGCATTT
630188 TTTTTTTATTATGTTTCATGCA
1 TTTTTTTATTATGTTTCATGCA
630210 TTTTTTTATTATGTTTCATGCA
1 TTTTTTTATTATGTTTCATGCA
630232 TTTTT
1 TTTTT
630237 AACATGTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.67
Consensus pattern (22 bp):
TTTTTTTATTATGTTTCATGCA
Found at i:630243 original size:20 final size:21
Alignment explanation
Indices: 630189--630243 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
630179 CATGCATTTT
**
630189 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
630210 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
630232 -TTTTTAACATGT
1 TTTTTTAACATGT
630244 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:633936 original size:15 final size:15
Alignment explanation
Indices: 633916--633946 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
633906 ATTTCGTTTG
*
633916 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
633931 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
633946 G
1 G
633947 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:635779 original size:21 final size:21
Alignment explanation
Indices: 635750--635794 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
635740 AAGTTTTCAT
*
635750 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
635770 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
635792 TTT
1 TTT
635795 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:638027 original size:13 final size:13
Alignment explanation
Indices: 638009--638034 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
637999 TAATTTTTTG
638009 TGTATCGATACAT
1 TGTATCGATACAT
638022 TGTATCGATACAT
1 TGTATCGATACAT
638035 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:638138 original size:20 final size:20
Alignment explanation
Indices: 638115--638168 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
638105 CATTGCAACA
638115 TGTATCGATACTTTGAATTG
1 TGTATCGATACTTTGAATTG
638135 TGTATCGATACTTTGAATTG
1 TGTATCGATACTTTGAATTG
638155 TGTATCGATACTTT
1 TGTATCGATACTTT
638169 TAAGGGTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (20 bp):
TGTATCGATACTTTGAATTG
Found at i:639626 original size:19 final size:19
Alignment explanation
Indices: 639602--639651 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
639592 AAACAGTAAA
*
639602 TGTATCAATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
639621 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
639640 TGTATCGATACA
1 TGTATCGATACA
639652 ATGTATCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:639721 original size:13 final size:13
Alignment explanation
Indices: 639703--639728 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
639693 CATTTTTCAA
639703 TGTATCGATACAT
1 TGTATCGATACAT
639716 TGTATCGATACAT
1 TGTATCGATACAT
639729 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:642150 original size:51 final size:51
Alignment explanation
Indices: 642084--642218 Score: 234
Period size: 51 Copynumber: 2.6 Consensus size: 51
642074 GTTAAGTTCT
* *
642084 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* *
642135 TAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
642186 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTTCACAATCGGGGATACTCCAACCCCG
642219 TTATTTTTGA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 78 1.00
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.30
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
Found at i:642282 original size:79 final size:79
Alignment explanation
Indices: 642150--642297 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 79
642140 TTCCACAATC
* * *
642150 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCAGACTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAAC
642215 CCCGTTATTTTTGA
66 CCCGTTATTTTTGA
* *** * *
642229 GGGGATACTCCAACCCTAG-CTTTATTTCCAAAATATTGATTTCTCACATTCGGGGATACTTCAA
1 GGGGATACTCCAACCC-AGACTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAA
642293 CCCCG
65 CCCCG
642298 GCCTTATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 58 0.98
80 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (79 bp):
GGGGATACTCCAACCCAGACTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAAC
CCCGTTATTTTTGA
Found at i:642332 original size:130 final size:131
Alignment explanation
Indices: 642099--642375 Score: 337
Period size: 130 Copynumber: 2.1 Consensus size: 131
642089 TTTCATAATC
* * *
642099 GGGGATACTCCAACCC-CGATTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCTAGACTTTATTTCCAAAACACTAATTTTCCACAATCGGGGATACTCCAA
** * *
642163 CCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTT-TT
66 CCCCGACCTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCAT
642227 GA
131 -A
* * * * *
642229 GGGGATACTCCAACCCTAG-CTTTATTTCCAAAATATTGA-TTTCTCACATTCGGGGATACTTCA
1 GGGGATACTCCAACCCTAGACTTTATTTCCAAAACACTAATTTTC-CACAATCGGGGATACTCCA
* * * ***
642292 ACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCA
65 ACCCCGACCTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCA
*
642357 TC
130 TA
642359 GGGGATACTCCAACCCT
1 GGGGATACTCCAACCCT
642376 GTTATTTCCG
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
129 4 0.03
130 119 0.95
131 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (131 bp):
GGGGATACTCCAACCCTAGACTTTATTTCCAAAACACTAATTTTCCACAATCGGGGATACTCCAA
CCCCGACCTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCAT
A
Found at i:642368 original size:28 final size:28
Alignment explanation
Indices: 642328--642404 Score: 118
Period size: 28 Copynumber: 2.8 Consensus size: 28
642318 ATTTCTCACA
642328 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
642356 ATCGGGGATACTCCAACCCTGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
***
642384 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
642405 ACTTTATTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:642486 original size:158 final size:160
Alignment explanation
Indices: 642198--642527 Score: 542
Period size: 158 Copynumber: 2.1 Consensus size: 160
642188 ATTTTTCACA
** *
642198 ATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCTAGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCGAGCTTTATTTCCAAAAT
*
642263 ATTGATTTCTCACATTCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACA
66 ATTGATTTCTCACAATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACA
*
642328 ATCGGGGATACTCCAA-CCCCGTTA-TTTC
131 ATCGGGGATACTCCAACCCCCATTATTTTC
*
642356 ATCGGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGA-CTTTATTTCCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAA-CCCGAGCTTTATTTCCAAAA
*
642420 TATTGATTTCTTACAATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCAC
65 TATTGATTTCTCACAATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCAC
*
642485 AATTGGGGATACTCCAACCCCCATTATTTTC
130 AATCGGGGATACTCCAACCCCCATTATTTTC
*
642516 A-CGAGGATACTC
1 ATCGGGGATACTC
642528 AAATCCCGAT
Statistics
Matches: 160, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
158 134 0.84
159 21 0.13
160 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (160 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCGAGCTTTATTTCCAAAAT
ATTGATTTCTCACAATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACA
ATCGGGGATACTCCAACCCCCATTATTTTC
Found at i:642505 original size:51 final size:51
Alignment explanation
Indices: 642229--642505 Score: 229
Period size: 51 Copynumber: 5.3 Consensus size: 51
642219 TTATTTTTGA
** * *
642229 GGGGATACTCCAACCCTAGCTTTATTTCCAAAATATTGATTTCTCAC-ATT
1 GGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATT
* *
642279 CGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATC
1 -GGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATT
*** ** *** *** *
642331 GGGGATACTCCAACCCC-G--TTATTTCATCGGGGATACTCCAACCCTGTTATTT
1 GGGGATACTCCAACCCCGGCCTTATTTC-T--AAAATA-TTGATTTCTCACAATT
* * * * *
642383 CCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTCTTACAATC
1 ----GGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATT
*
642438 GGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATT
1 GGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATT
642489 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
642506 CATTATTTTC
Statistics
Matches: 172, Mismatches: 42, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
48 7 0.04
49 1 0.01
50 1 0.01
51 122 0.71
52 8 0.05
55 6 0.03
56 20 0.12
59 7 0.04
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATT
Found at i:648509 original size:19 final size:20
Alignment explanation
Indices: 648464--648520 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
648454 CTGCCACTTT
*
648464 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAA
*
648484 TATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
* *
648503 CATGTATCAATATAATTG
1 CATGTATCGATACAATTG
648521 TAGACACCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:648736 original size:21 final size:21
Alignment explanation
Indices: 648711--648753 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
648701 AAATCACATT
648711 ATTGTCCAAATGTATCGATAC
1 ATTGTCCAAATGTATCGATAC
***
648732 ATTGTTTGAATGTATCGATAC
1 ATTGTCCAAATGTATCGATAC
648753 A
1 A
648754 AGGTCCCAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (21 bp):
ATTGTCCAAATGTATCGATAC
Found at i:648828 original size:13 final size:13
Alignment explanation
Indices: 648810--648834 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
648800 ACATAAATGT
648810 TGTATCGATACAA
1 TGTATCGATACAA
648823 TGTATCGATACA
1 TGTATCGATACA
648835 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:648833 original size:32 final size:32
Alignment explanation
Indices: 648791--648853 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
648781 GTCAACGATT
*
648791 TGTATTGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
*
648823 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAATGTTGTATCGATACA
648854 TATGAAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAATGTTGTATCGATACAA
Found at i:648847 original size:19 final size:18
Alignment explanation
Indices: 648790--648855 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
648780 TGTCAACGAT
*
648790 TTGTATTGATACATAAATG
1 TTGTATCGATACAT-AATG
648809 TTGTATCGATAC--AA--
1 TTGTATCGATACATAATG
648823 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAA-TG
648841 TTGTATCGATACATA
1 TTGTATCGATACATA
648856 TGAAGCTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
16 2 0.05
19 25 0.62
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
TTGTATCGATACATAATG
Found at i:648915 original size:13 final size:13
Alignment explanation
Indices: 648897--648921 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
648887 ATTACTCAAA
648897 TGTATCGATACAT
1 TGTATCGATACAT
648910 TGTATCGATACA
1 TGTATCGATACA
648922 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:648974 original size:52 final size:52
Alignment explanation
Indices: 648932--649055 Score: 230
Period size: 52 Copynumber: 2.4 Consensus size: 52
648922 CTGATCTTTG
648932 TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAATC
1 TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAATC
*
648984 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATC
1 TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAATC
*
649036 TATCGATACATGCAGACAAA
1 TATCGATACATGCAGGCAAA
649056 ATTTCATATT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAATC
Found at i:662928 original size:23 final size:21
Alignment explanation
Indices: 662904--662993 Score: 103
Period size: 22 Copynumber: 4.2 Consensus size: 21
662894 CGTCCTCCAC
*
662904 AAAAGAAAAAAACAAAACAAAA
1 AAAACAAAAAAA-AAAACAAAA
*
662926 CAAACAAAAAAAAAAGA-AAGAA
1 AAAACAAAAAAAAAA-ACAA-AA
*
662948 AAAA-AACAAAAAAAACAAAA
1 AAAACAAAAAAAAAAACAAAA
662968 AAAACAAAACAAAAAAACAAAA
1 AAAACAAAA-AAAAAAACAAAA
662990 AAAA
1 AAAA
662994 AACAACAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
20 7 0.12
21 19 0.33
22 32 0.55
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (21 bp):
AAAACAAAAAAAAAAACAAAA
Found at i:662944 original size:33 final size:34
Alignment explanation
Indices: 662902--663004 Score: 131
Period size: 33 Copynumber: 3.0 Consensus size: 34
662892 GGCGTCCTCC
*
662902 ACAAAAGAAAAAAACAAAACAAAACAAACAAAAA
1 ACAAAAGAAAAAAACAAAACAAAAAAAACAAAAA
662936 A-AAAAGAAAGAAAA-AAAACAAAAAAAACAAAAAAA
1 ACAAAAGAAA-AAAACAAAACAAAAAAAAC--AAAAA
*
662971 ACAAAACAAAAAAACAAAA-AAAAAACAACAAAAA
1 ACAAAAGAAAAAAACAAAACAAAAAA-AACAAAAA
663005 GGGTCCGGAT
Statistics
Matches: 61, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
33 21 0.34
34 10 0.16
35 16 0.26
36 14 0.23
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (34 bp):
ACAAAAGAAAAAAACAAAACAAAAAAAACAAAAA
Found at i:662964 original size:42 final size:42
Alignment explanation
Indices: 662904--663004 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 42
662894 CGTCCTCCAC
* * *
662904 AAAAGAAAA-AAACAAAACAAAACAAACAAAA-AAAAAAGA-A
1 AAAAAAAAACAAAAAAAACAAAAAAAACAAAACAAAAAA-ACA
662944 AGAAAAAAAACAAAAAAAACAAAAAAAACAAAACAAAAAAACA
1 A-AAAAAAAACAAAAAAAACAAAAAAAACAAAACAAAAAAACA
*
662987 AAAAAAAAACAACAAAAA
1 AAAAAAAAACAAAAAAAA
663005 GGGTCCGGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
40 1 0.02
41 7 0.13
42 37 0.70
43 8 0.15
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (42 bp):
AAAAAAAAACAAAAAAAACAAAAAAAACAAAACAAAAAAACA
Found at i:663004 original size:1 final size:1
Alignment explanation
Indices: 662904--662995 Score: 76
Period size: 1 Copynumber: 92.0 Consensus size: 1
662894 CGTCCTCCAC
* * * * * * * * *
662904 AAAAGAAAAAAACAAAACAAAACAAACAAAAAAAAAAGAAAGAAAAAAAACAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
662969 AAACAAAACAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
662996 CAACAAAAAG
Statistics
Matches: 67, Mismatches: 24, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:664601 original size:34 final size:33
Alignment explanation
Indices: 664494--664653 Score: 151
Period size: 34 Copynumber: 4.7 Consensus size: 33
664484 CTTCTAAAGT
* * *
664494 CCACAACTCAGTGGCACATTTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCAC--CTTTTTCCTTTT-AAGC
** * * *
664530 CCACAACTCTATGCCA-CTCTTTTCCTTCTAAGT
1 CCACAACTCCGTGGCACCT-TTTTCCTTTTAAGC
664563 CCACAACTCCGTGGCACCTTTCTTCCTTTTAAGC
1 CCACAACTCCGTGGCACCTTT-TTCCTTTTAAGC
* *
664597 CCACAACTCCGTGGCATTCTTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCA-CCTTTTTCCTTTTAAGC
* *
664631 CCACAACTCTGTGGCACCCTTTT
1 CCACAACTCCGTGGCACCTTTTT
664654 AAGCCCACAA
Statistics
Matches: 103, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
33 24 0.23
34 62 0.60
35 4 0.04
36 13 0.13
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.36
Consensus pattern (33 bp):
CCACAACTCCGTGGCACCTTTTTCCTTTTAAGC
Found at i:664634 original size:68 final size:68
Alignment explanation
Indices: 664483--664648 Score: 208
Period size: 68 Copynumber: 2.4 Consensus size: 68
664473 CCAGTGGCAA
* * * *
664483 CCTTCTAAAGTCCACAACTCAGTGGCACATTTTTTTCTTTTTAAAGCCCACAACTCTATGCCACT
1 CCTTCT-AAGTCCACAACTCAGTGGCAC-CTTTCTTCCTTTTAAAGCCCACAACTCCATGCCACT
664548 CTTTT
64 CTTTT
* * * *
664553 CCTTCTAAGTCCACAACTCCGTGGCACCTTTCTTCCTTTT-AAGCCCACAACTCCGTGGCATTCT
1 CCTTCTAAGTCCACAACTCAGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCCATGCCACTC-
664617 TTTT
65 TTTT
* *
664621 CCTTTTAAGTCCACAACTCTGTGGCACC
1 CCTTCTAAGTCCACAACTCAGTGGCACC
664649 CTTTTAAGCC
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
67 19 0.22
68 40 0.47
69 20 0.24
70 6 0.07
ACGTcount: A:0.21, C:0.33, G:0.11, T:0.35
Consensus pattern (68 bp):
CCTTCTAAGTCCACAACTCAGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCCATGCCACTCT
TTT
Found at i:664661 original size:27 final size:28
Alignment explanation
Indices: 664621--664702 Score: 96
Period size: 27 Copynumber: 2.9 Consensus size: 28
664611 CATTCTTTTT
*
664621 CCTTTTAAGTCCACAACTCT-GTGGCA-C
1 CCTTTTAAGCCCACAACT-TGGTGGCACC
*
664648 CCTTTTAAGCCCACAAGTTGGTGGCACC
1 CCTTTTAAGCCCACAACTTGGTGGCACC
* *
664676 CCTTTTAAAGCCCACAAGTTAGTGGCA
1 CCTTTT-AAGCCCACAACTTGGTGGCA
664703 ACCTTCAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 19 0.39
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (28 bp):
CCTTTTAAGCCCACAACTTGGTGGCACC
Found at i:664691 original size:29 final size:28
Alignment explanation
Indices: 664641--664748 Score: 112
Period size: 28 Copynumber: 3.8 Consensus size: 28
664631 CCACAACTCT
*
664641 GTGGCACCCTTT-TAAGCCCACAAGTTG
1 GTGGCACCCTTTAAAAGCCCACAAGTTG
* *
664668 GTGGCACCCCTTTTAAAGCCCACAAGTTA
1 GTGGCA-CCCTTTAAAAGCCCACAAGTTG
* * *
664697 GTGGCAACCTTCAAAAGCACACAAGTTG
1 GTGGCACCCTTTAAAAGCCCACAAGTTG
*
664725 AT-GCAACCCTTTCAAAAGCCCACA
1 GTGGC-ACCCTTT-AAAAGCCCACA
664749 TAAGTTGATG
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
27 8 0.12
28 29 0.44
29 29 0.44
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (28 bp):
GTGGCACCCTTTAAAAGCCCACAAGTTG
Found at i:664707 original size:28 final size:27
Alignment explanation
Indices: 664631--664748 Score: 96
Period size: 29 Copynumber: 4.2 Consensus size: 27
664621 CCTTTTAAGT
* * *
664631 CCACAACTCTGTGGCACCCTTT-TAAGC
1 CCACAAGT-TGTGGCAACCTTTAAAAGC
* *
664658 CCACAAGTTGGTGGCACCCCTTTTAAAGC
1 CCACAAGTT-GTGGCA-ACCTTTAAAAGC
*
664687 CCACAAGTTAGTGGCAACCTTCAAAAGC
1 CCACAAGTT-GTGGCAACCTTTAAAAGC
*
664715 ACACAAGTTGAT-GCAACCCTTTCAAAAGC
1 CCACAAGTTG-TGGCAA-CCTTT-AAAAGC
664744 CCACA
1 CCACA
664749 TAAGTTGATG
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.01
27 18 0.24
28 28 0.37
29 29 0.38
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (27 bp):
CCACAAGTTGTGGCAACCTTTAAAAGC
Found at i:664887 original size:43 final size:46
Alignment explanation
Indices: 664770--665089 Score: 210
Period size: 49 Copynumber: 6.8 Consensus size: 46
664760 CGTCTTCTTC
* * * * *
664770 TAAGTCCAATATCGCTGGTCTTGAACCAACATATTGGCACCTTTATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC---ACCTT
** * *
664819 TAAAACTCAATATCGCTTGCCTTGAATCAGCATATT-G-A-CACCTT
1 TAAGTC-CAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTT
* * *
664863 GAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCCTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA--C-CACCTT
* *
664912 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCACCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C--CACCTT
* * *
664961 TAAGTCCAATAGCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC---ACC-T-T
* * * * *
665012 TGAGTCCAATGTAGCTGGCCTTGAATTAGCACATT---AGCA-C--
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTT
* * *
665052 -AAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
665090 TCTTTATCAC
Statistics
Matches: 217, Mismatches: 38, Indels: 39
0.74 0.13 0.13
Matches are distributed among these distances:
39 27 0.12
42 1 0.00
43 27 0.12
44 10 0.05
45 1 0.00
46 1 0.00
47 1 0.00
48 5 0.02
49 88 0.41
50 26 0.12
51 30 0.14
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (46 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTT
Found at i:664940 original size:49 final size:49
Alignment explanation
Indices: 664876--665051 Score: 212
Period size: 49 Copynumber: 3.6 Consensus size: 49
664866 GACCAATATC
664876 GCTGGCCTTGAATCAGCACATTGGCACCCTCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCCTCATCTTTAAGTCCAATGTA
* * * *
664925 GCTGGCCTTGAATCAGCACATTGGCATCTTCACCTTTAAGTCCAATAG-C
1 GCTGGCCTTGAATCAGCACATTGGCACCCTCATCTTTAAGTCCAAT-GTA
* ** *
664974 GCTGGCCTTGAATCAGCATATTGGCA-CCTTTTCCGTCTTGAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCCTCAT-C-T-TTAAGTCCAATGTA
* *
665025 GCTGGCCTTGAATTAGCACATTAGCAC
1 GCTGGCCTTGAATCAGCACATTGGCAC
665052 AAGTCCAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.02
49 69 0.64
50 3 0.03
51 33 0.31
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
GCTGGCCTTGAATCAGCACATTGGCACCCTCATCTTTAAGTCCAATGTA
Found at i:664980 original size:98 final size:100
Alignment explanation
Indices: 664857--665046 Score: 278
Period size: 98 Copynumber: 1.9 Consensus size: 100
664847 AGCATATTGA
*
664857 CACCTTGAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCCTCAT-C-T-TTAAGTCC
1 CACCTTGAAGACCAATAGCGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCCGTCTTAAGTCC
664919 AATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
65 AATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * * ** *
664955 CACCTTTAAGTCCAATAGCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCTTGAGTCCA
1 CACCTTGAAGACCAATAGCGCTGGCCTTGAATCAGCACATTGGCACCTCATCCGTCTTAAGTCCA
*
665020 ATGTAGCTGGCCTTGAATTAGCACATT
66 ATGTAGCTGGCCTTGAATCAGCACATT
665047 AGCACAAGTC
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
97 4 0.05
98 42 0.52
99 1 0.01
100 34 0.42
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (100 bp):
CACCTTGAAGACCAATAGCGCTGGCCTTGAATCAGCACATTGGCACCTCATCCGTCTTAAGTCCA
ATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
Found at i:665974 original size:19 final size:19
Alignment explanation
Indices: 665950--666044 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
665940 CAACGATTTA
*
665950 TATCGAAACATAAGTGTTG
1 TATCGATACATAAGTGTTG
665969 TATCGATAC--AA----TG
1 TATCGATACATAAGTGTTG
665982 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
666001 TATCGATAC--AA----TG
1 TATCGATACATAAGTGTTG
666014 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
666033 TATCGATACATA
1 TATCGATACATA
666045 TGAAGCTACT
Statistics
Matches: 63, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 22 0.35
15 4 0.06
17 4 0.06
19 33 0.52
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.34
Consensus pattern (19 bp):
TATCGATACATAAGTGTTG
Found at i:665985 original size:13 final size:13
Alignment explanation
Indices: 665967--666023 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
665957 ACATAAGTGT
665967 TGTATCGATACAA
1 TGTATCGATACAA
665980 TGTATCGATACATAA
1 TGTATCGATAC--AA
665995 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
666012 TGTATCGATACA
1 TGTATCGATACA
666024 TAAGTGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:665986 original size:32 final size:32
Alignment explanation
Indices: 665950--666042 Score: 177
Period size: 32 Copynumber: 2.9 Consensus size: 32
665940 CAACGATTTA
*
665950 TATCGAAACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
665982 TATCGATACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
666014 TATCGATACATAAGTGTTGTATCGATACA
1 TATCGATACATAAGTGTTGTATCGATACA
666043 TATGAAGCTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TATCGATACATAAGTGTTGTATCGATACAATG
Found at i:666159 original size:52 final size:52
Alignment explanation
Indices: 666119--666244 Score: 189
Period size: 52 Copynumber: 2.4 Consensus size: 52
666109 CACTAATCTT
666119 TATATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TATATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
* * * * * *
666171 TGTATCGATATATGTAGGCAAATTTGCCCAGATGTATCAATACGCTATGAAA
1 TATATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
*
666223 TCTATCGATACATGCAGGAAAA
1 TATATCGATACATGCAGGAAAA
666245 ATTTCATATG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (52 bp):
TATATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:669852 original size:33 final size:33
Alignment explanation
Indices: 669815--669881 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
669805 TTTTTTGGAA
*
669815 TGTATCAATACTTGGAATAATGTATCAATACAT
1 TGTATCAATACTTGGAATAATATATCAATACAT
** * *
669848 TGTATTGATACTTTGAATAATATATCGATACAT
1 TGTATCAATACTTGGAATAATATATCAATACAT
669881 T
1 T
669882 TTCAGAATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTATCAATACTTGGAATAATATATCAATACAT
Found at i:671023 original size:20 final size:20
Alignment explanation
Indices: 671000--671049 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
670990 CACCCAGATA
*
671000 TATCGATACATTA-TGATTTG
1 TATCGATACATTATTCA-TTG
671020 TATCGATACA-TATTCATTG
1 TATCGATACATTATTCATTG
671039 TATCGATACAT
1 TATCGATACAT
671050 GGACAACTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (20 bp):
TATCGATACATTATTCATTG
Found at i:676430 original size:13 final size:13
Alignment explanation
Indices: 676412--676437 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
676402 CAATTTTTTG
676412 TGTATCGATACAT
1 TGTATCGATACAT
676425 TGTATCGATACAT
1 TGTATCGATACAT
676438 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:680373 original size:22 final size:22
Alignment explanation
Indices: 680348--680389 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
680338 TTTTTTGATA
*
680348 TTTGACAAAGAGGGAGAAATGC
1 TTTGAAAAAGAGGGAGAAATGC
*
680370 TTTGAAAAAGGGGGAGAAAT
1 TTTGAAAAAGAGGGAGAAAT
680390 ATGTTTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.33, T:0.19
Consensus pattern (22 bp):
TTTGAAAAAGAGGGAGAAATGC
Found at i:680989 original size:20 final size:20
Alignment explanation
Indices: 680966--681052 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
680956 CATACCCAGA
680966 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
680986 TGTATCGATAC---A----T
1 TGTATCGATACATTATGCTT
* *
680999 TGTATCGATACA-T-GGACAAT
1 TGTATCGATACATTATG-C-TT
681019 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
681039 TGTATCGATACATT
1 TGTATCGATACATT
681053 GTATCGATAC
Statistics
Matches: 55, Mismatches: 2, Indels: 20
0.71 0.03 0.26
Matches are distributed among these distances:
13 12 0.22
17 1 0.02
20 39 0.71
21 2 0.04
22 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:681003 original size:13 final size:13
Alignment explanation
Indices: 680985--681064 Score: 58
Period size: 13 Copynumber: 7.1 Consensus size: 13
680975 ACATTATGCT
680985 TTGTATCGATACA
1 TTGTATCGATACA
680998 TTGTATCGATACA
1 TTGTATCGATACA
*
681011 -TG----GACA-A
1 TTGTATCGATACA
681018 TTGTATCGATACA
1 TTGTATCGATACA
*
681031 -T-TAT-G---CT
1 TTGTATCGATACA
681038 TTGTATCGATACA
1 TTGTATCGATACA
681051 TTGTATCGATACA
1 TTGTATCGATACA
681064 T
1 T
681065 GGACAATTGT
Statistics
Matches: 51, Mismatches: 4, Indels: 24
0.65 0.05 0.30
Matches are distributed among these distances:
7 2 0.04
8 6 0.12
9 3 0.06
10 2 0.04
11 3 0.06
12 6 0.12
13 29 0.57
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:681026 original size:53 final size:53
Alignment explanation
Indices: 680966--681084 Score: 229
Period size: 53 Copynumber: 2.2 Consensus size: 53
680956 CATACCCAGA
680966 TGTATCGATACATTATGCTTTGTATCGATACATTGTATCGATACATGGACAAT
1 TGTATCGATACATTATGCTTTGTATCGATACATTGTATCGATACATGGACAAT
681019 TGTATCGATACATTATGCTTTGTATCGATACATTGTATCGATACATGGACAAT
1 TGTATCGATACATTATGCTTTGTATCGATACATTGTATCGATACATGGACAAT
*
681072 TGTATCAATACAT
1 TGTATCGATACAT
681085 GAAACTGGCA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 65 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATTATGCTTTGTATCGATACATTGTATCGATACATGGACAAT
Found at i:681075 original size:33 final size:33
Alignment explanation
Indices: 681038--681182 Score: 94
Period size: 33 Copynumber: 4.5 Consensus size: 33
681028 ACATTATGCT
681038 TTGTATCGATACATTGTATCGATACATGGACAA
1 TTGTATCGATACATTGTATCGATACATGGACAA
* *
681071 TTGTATCAATACA-TG-A---A-AC-TGG-CAG
1 TTGTATCGATACATTGTATCGATACATGGACAA
* * * *
681096 TAGCTACCCTACCACTATTTGTATCGATACATAGGAC-A
1 TTG-TA-TCGA-TAC-ATT-GTATCGATACAT-GGACAA
*
681134 TTGTATCGATACATTGTATCGATACAT-GATGAA
1 TTGTATCGATACATTGTATCGATACATGGA-CAA
681167 TTGTATCGATACATTG
1 TTGTATCGATACATTG
681183 CTTGTAACGG
Statistics
Matches: 84, Mismatches: 12, Indels: 32
0.66 0.09 0.25
Matches are distributed among these distances:
25 4 0.05
26 5 0.06
27 4 0.05
28 3 0.04
29 1 0.01
30 1 0.01
31 4 0.05
32 3 0.04
33 41 0.49
34 3 0.04
35 3 0.04
36 4 0.05
37 3 0.04
38 4 0.05
39 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (33 bp):
TTGTATCGATACATTGTATCGATACATGGACAA
Found at i:681149 original size:13 final size:13
Alignment explanation
Indices: 681131--681182 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
681121 GATACATAGG
681131 ACATTGTATCGAT
1 ACATTGTATCGAT
681144 ACATTGTATCGAT
1 ACATTGTATCGAT
681157 ACA-TG-AT-G--
1 ACATTGTATCGAT
681165 A-ATTGTATCGAT
1 ACATTGTATCGAT
681177 ACATTG
1 ACATTG
681183 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:683091 original size:17 final size:16
Alignment explanation
Indices: 683055--683089 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
683045 ACACAATTGC
683055 TTTGTAAATAATGTGA
1 TTTGTAAATAATGTGA
683071 TTTGTAAA-ATATGTGA
1 TTTGTAAATA-ATGTGA
683087 TTT
1 TTT
683090 TGGCTTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 1 0.06
16 17 0.94
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTGTAAATAATGTGA
Found at i:683387 original size:38 final size:38
Alignment explanation
Indices: 683232--683388 Score: 99
Period size: 38 Copynumber: 4.2 Consensus size: 38
683222 GTTTCAACTG
* * * *
683232 TGCCACCGGTTAAGAATAGTAGTTATTGTTTCGAGCTA
1 TGCCACCGGTTAAGAATAGTAGTTTTTGTTTCAAACCA
* * *
683270 TGCCACCGGTTTAGAATA--ACGATTTTTGTTCCAAACCG
1 TGCCACCGGTTAAGAATAGTA-G-TTTTTGTTTCAAACCA
** * ***
683308 TGTTACTGG-TAA-AAGTAGTAGTTTTTG-TTCTAAATTG
1 TGCCACCGGTTAAGAA-TAGTAGTTTTTGTTTC-AAACCA
* * *
683345 TGCCACCGGTTAAGAATAGTGGTTTTTGTTTCGAGCCA
1 TGCCACCGGTTAAGAATAGTAGTTTTTGTTTCAAACCA
683383 TGCCAC
1 TGCCAC
683389 TATTTGAGAA
Statistics
Matches: 87, Mismatches: 23, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
36 5 0.06
37 21 0.24
38 55 0.63
39 6 0.07
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (38 bp):
TGCCACCGGTTAAGAATAGTAGTTTTTGTTTCAAACCA
Found at i:685025 original size:147 final size:146
Alignment explanation
Indices: 684743--685025 Score: 381
Period size: 147 Copynumber: 1.9 Consensus size: 146
684733 AATTTTTAAC
* * *
684743 TTAGTATTTTTCTTGAATCAAATCTCAAATATTTTGAAAAATATTAAATTAATTTTCTTACCTCG
1 TTAGTATTTTTCTTGAATCAAATCTAAAATATTTTGAAAAATATTAAATTAATTTTCTTACCACC
* * * * * *
684808 TATTTTTTCAAAAATAGTGTCCTAAATGAATATTTATACTTAGGATGTTATTGAGACAAATTTAA
66 AATTTTCTCAAAAATAATGTCCTAAATGAATATTTATACTTAGAATATTATTAAGACAAATTTAA
684873 ATGATTATTTCTAAAT
131 ATGATTATTTCTAAAT
* *
684889 TTAGTATTTTTCCTTGAATTAGAT-TGAAAATATTTTGAAAAATATTAAATTAATTTTCTTACCA
1 TTAGTATTTTT-CTTGAATCAAATCT-AAAATATTTTGAAAAATATTAAATTAATTTTCTTACCA
* * * *
684953 CCAATTTTCTCAAAAATAATGTTCC-GAATGAATATTTATACTTATAATATTTTTAAGACAAGTT
64 CCAATTTTCTCAAAAATAATG-TCCTAAATGAATATTTATACTTAGAATATTATTAAGACAAATT
*
685017 TAAGTGATT
128 TAAATGATT
685026 TTTAAGATAA
Statistics
Matches: 118, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
146 12 0.10
147 103 0.87
148 3 0.03
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.44
Consensus pattern (146 bp):
TTAGTATTTTTCTTGAATCAAATCTAAAATATTTTGAAAAATATTAAATTAATTTTCTTACCACC
AATTTTCTCAAAAATAATGTCCTAAATGAATATTTATACTTAGAATATTATTAAGACAAATTTAA
ATGATTATTTCTAAAT
Found at i:692751 original size:31 final size:31
Alignment explanation
Indices: 692716--692792 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
692706 TATATTGAAA
692716 AATGTATCGATACATCTAAGTAAAAAGACAG
1 AATGTATCGATACATCTAAGTAAAAAGACAG
**
692747 AATGTATCGATACATCTGGGTAAAAAGACAG
1 AATGTATCGATACATCTAAGTAAAAAGACAG
692778 AATGTATCGATACAT
1 AATGTATCGATACAT
692793 TGAAGAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (31 bp):
AATGTATCGATACATCTAAGTAAAAAGACAG
Found at i:692805 original size:20 final size:20
Alignment explanation
Indices: 692776--692852 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
692766 GTAAAAAGAC
692776 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
692796 AGAATTTATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
692816 TA-CATATATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
692836 AAAATGTATTGATACAT
1 AGAATGTATCGATACAT
692853 CTGGGTTAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.34
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:694505 original size:60 final size:60
Alignment explanation
Indices: 694425--694550 Score: 198
Period size: 60 Copynumber: 2.1 Consensus size: 60
694415 CAGTGTATTG
* *
694425 ATACAATTTGAGATGTATCAACACATTATGCCTTGTATCAATATATTTGGAGATGTATCA
1 ATACAACTTGAGATGCATCAACACATTATGCCTTGTATCAATATATTTGGAGATGTATCA
* * * *
694485 ATACAACTTGTGATGCATCAATACATTATGCCTTGTATCTATATATTTGGAGATGTATCG
1 ATACAACTTGAGATGCATCAACACATTATGCCTTGTATCAATATATTTGGAGATGTATCA
694545 ATACAA
1 ATACAA
694551 ATGAAGGTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (60 bp):
ATACAACTTGAGATGCATCAACACATTATGCCTTGTATCAATATATTTGGAGATGTATCA
Found at i:694665 original size:21 final size:21
Alignment explanation
Indices: 694639--694678 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
694629 CAATCAATAG
*
694639 TTGTATCAATATATTCATATA
1 TTGTATCAATACATTCATATA
*
694660 TTGTATCGATACATTCATA
1 TTGTATCAATACATTCATA
694679 ACCAAGCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (21 bp):
TTGTATCAATACATTCATATA
Found at i:695244 original size:33 final size:33
Alignment explanation
Indices: 695206--695285 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
695196 TTCTAAAGCT
* * *
695206 GTTAACTTTGATCACATATGTTTTAA-ACTTTTG
1 GTTAACTTTGATCACAGACGTTATAACA-TTTTG
* * *
695239 GTTAACTTTGATTATAGACGTTATACCATTTTG
1 GTTAACTTTGATCACAGACGTTATAACATTTTG
695272 GTTAACTTTGATCA
1 GTTAACTTTGATCA
695286 AATTTCTTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 38 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (33 bp):
GTTAACTTTGATCACAGACGTTATAACATTTTG
Found at i:695879 original size:22 final size:21
Alignment explanation
Indices: 695867--695946 Score: 79
Period size: 22 Copynumber: 3.7 Consensus size: 21
695857 AACAATAGAT
695867 ACATATGACTATAACTGAATGC
1 ACATATGACTATAAC-GAATGC
* *
695889 ACATTTAACTATAACTGAATGC
1 ACATATGACTATAAC-GAATGC
* * * *
695911 ACATTTGACTATAACAGTAGGT
1 ACATATGACTATAAC-GAATGC
695933 ACATATGACTATAA
1 ACATATGACTATAA
695947 TTGAATGTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.30
Consensus pattern (21 bp):
ACATATGACTATAACGAATGC
Found at i:696047 original size:21 final size:21
Alignment explanation
Indices: 696023--696073 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
696013 ACCAACCCCA
*
696023 TTACAAAGAGAACTAA-CCTTT
1 TTACAAAGAGAAATAATCC-TT
696044 TTACTAAA-AGAAATAATCCTT
1 TTAC-AAAGAGAAATAATCCTT
*
696065 TCACAAAGA
1 TTACAAAGA
696074 ATCACTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 3 0.12
21 17 0.68
22 5 0.20
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (21 bp):
TTACAAAGAGAAATAATCCTT
Found at i:696851 original size:24 final size:24
Alignment explanation
Indices: 696824--696886 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
696814 AACATAATCC
*
696824 ACAAAACAAATCAATATTAATTAT
1 ACAATACAAATCAATATTAATTAT
696848 ACAATACAAATCAATATTAATTAT
1 ACAATACAAATCAATATTAATTAT
696872 ACAATACAAATCAAT
1 ACAATACAAATCAAT
696887 TCATAACTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (24 bp):
ACAATACAAATCAATATTAATTAT
Found at i:696945 original size:30 final size:30
Alignment explanation
Indices: 696910--696966 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
696900 AAACACATTA
* * * *
696910 AATACAGATTCATTTGAATATCAATCACTG
1 AATACAAATTAATATGAATACCAATCACTG
696940 AATACAAATTAATATGAATACCAATCA
1 AATACAAATTAATATGAATACCAATCA
696967 TAATCAATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.30
Consensus pattern (30 bp):
AATACAAATTAATATGAATACCAATCACTG
Found at i:698066 original size:15 final size:15
Alignment explanation
Indices: 698042--698080 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
698032 AAGTATATTC
698042 AAAATAATTTAAGAAA
1 AAAAT-ATTTAAGAAA
**
698058 AAAATATTTAAGTCA
1 AAAATATTTAAGAAA
698073 AAAATATT
1 AAAATATT
698081 AAATTACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (15 bp):
AAAATATTTAAGAAA
Found at i:702743 original size:13 final size:13
Alignment explanation
Indices: 702725--702750 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
702715 TACAGCAAGT
702725 ATGTATCGATACA
1 ATGTATCGATACA
702738 ATGTATCGATACA
1 ATGTATCGATACA
702751 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:706834 original size:15 final size:15
Alignment explanation
Indices: 706814--706852 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
706804 TAAAAATGTC
*
706814 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
706829 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
706844 CCAAATGAA
1 CAAAATGAA
706853 ATTGATGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:708938 original size:20 final size:21
Alignment explanation
Indices: 708860--708937 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
708850 ATGTCCAAAA
*
708860 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
708880 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
708904 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
708925 TGTATCGATACAT
1 TGTATCGATACAT
708938 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:708942 original size:13 final size:13
Alignment explanation
Indices: 708924--708962 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
708914 ACATTTTTTG
708924 TTGTATCGATACA
1 TTGTATCGATACA
708937 TTGTATCGATACA
1 TTGTATCGATACA
*
708950 CTGTATCGATACA
1 TTGTATCGATACA
708963 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:710809 original size:18 final size:16
Alignment explanation
Indices: 710768--710813 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
710758 AATTACTTGA
710768 TTAAGGGGGAGATTTT
1 TTAAGGGGGAGATTTT
710784 TTAAGGGGGAGATTTT
1 TTAAGGGGGAGATTTT
710800 TTAAACGGGGGAGA
1 TT-AA-GGGGGAGA
710814 CAAAGGAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 18 0.64
17 2 0.07
18 8 0.29
ACGTcount: A:0.28, C:0.02, G:0.39, T:0.30
Consensus pattern (16 bp):
TTAAGGGGGAGATTTT
Found at i:711530 original size:13 final size:13
Alignment explanation
Indices: 711512--711537 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
711502 TACAGCAAGT
711512 ATGTATCGATACA
1 ATGTATCGATACA
711525 ATGTATCGATACA
1 ATGTATCGATACA
711538 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:717375 original size:34 final size:33
Alignment explanation
Indices: 717287--717386 Score: 141
Period size: 33 Copynumber: 3.0 Consensus size: 33
717277 AATTCTTCAA
*
717287 ATCTC-TCTTCTCAAAGTCCACGACTTAGTGGC
1 ATCTCTTCTTCTTAAAGTCCACGACTTAGTGGC
717319 ATCTCTT-TTCTTCAAAGTCCACGACTTAGTGGC
1 ATCTCTTCTTCTT-AAAGTCCACGACTTAGTGGC
* *
717352 ATCTTTTCCTTCTTAAAGTCCACGACTCAGTGGC
1 ATCTCTT-CTTCTTAAAGTCCACGACTTAGTGGC
717386 A
1 A
717387 CCCTTTTAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
32 9 0.15
33 27 0.44
34 20 0.33
35 5 0.08
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (33 bp):
ATCTCTTCTTCTTAAAGTCCACGACTTAGTGGC
Found at i:717763 original size:101 final size:101
Alignment explanation
Indices: 717576--717912 Score: 512
Period size: 101 Copynumber: 3.3 Consensus size: 101
717566 ACATTGGCAC
* * *
717576 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGCCCAAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGACCAAT
717641 ATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
63 ATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
717680 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATC
717745 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * * *
717781 ATTTAAGTCCAATTTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAGTATC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATC
* *
717846 GCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAA
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
717882 CTTTAAACCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCA
717913 ATGTATTGGT
Statistics
Matches: 216, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
101 175 0.81
102 1 0.00
104 40 0.19
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (101 bp):
CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATC
GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:717803 original size:153 final size:148
Alignment explanation
Indices: 717486--717912 Score: 605
Period size: 153 Copynumber: 2.9 Consensus size: 148
717476 GGCATCTTCT
717486 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCCCCTT-ATCTTTAAGACCAATGTCG
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGG-CCCTTCATCTTTAAGACCAATGTCG
717550 CTGGCCTTGAATCAGCACATTGGCA----C-CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCA
65 CTGGCCTTGAATCAGCACATTGGCACCTTCACTTTAAGCCCAATATCGCTGGCCTTGAATCAGCA
*
717610 TATTGGCGCCTTTGTCATC
130 TATTGGCGCCTTTGTCATA
*
717629 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC-CC--T-TCATCTTTAAGACCAATG
*
717694 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
62 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCA-CTTTAAGCCCAATATCGCTGGCCTTGAATC
717759 AGCATATTGGCGCCTTTGTCATA
126 AGCATATTGGCGCCTTTGTCATA
* * * * *
717782 TTTAAGTCCAATTTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAGTATCG
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC-CCTTCATCTTTAAGACCAATGTCG
* * * *
717847 CTGGCCTTGAATCAGCATATTGGCACCTTTGTCAACTTTAAACCCAATATCGTTGGCCGTGAATC
65 CTGGCCTTGAATCAGCACATTGGCACC--T-TC-ACTTTAAGCCCAATATCGCTGGCCTTGAATC
717912 A
126 A
717913 ATGTATTGGT
Statistics
Matches: 254, Mismatches: 15, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
142 1 0.00
143 41 0.16
145 1 0.00
146 1 0.00
147 43 0.17
150 44 0.17
151 2 0.01
152 1 0.00
153 119 0.47
154 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (148 bp):
TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCCCTTCATCTTTAAGACCAATGTCGC
TGGCCTTGAATCAGCACATTGGCACCTTCACTTTAAGCCCAATATCGCTGGCCTTGAATCAGCAT
ATTGGCGCCTTTGTCATA
Found at i:717921 original size:52 final size:52
Alignment explanation
Indices: 717576--717912 Score: 479
Period size: 52 Copynumber: 6.6 Consensus size: 52
717566 ACATTGGCAC
*
717576 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
*
717628 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * *
717680 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* *
717729 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * * *
717781 ATTTAAGTCCAATTTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * *
717830 CTTTAAGACCAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAA
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * *
717882 CTTTAAACCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCA
717913 ATGTATTGGT
Statistics
Matches: 257, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
49 88 0.34
50 2 0.01
51 2 0.01
52 165 0.64
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (52 bp):
CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
Found at i:719224 original size:19 final size:19
Alignment explanation
Indices: 719200--719282 Score: 106
Period size: 19 Copynumber: 4.7 Consensus size: 19
719190 TAAACAGAAA
719200 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
719219 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
719233 -TGTATCGATGCATAAGTG
1 TTGTATCGATACATAAGTG
*
719251 TTGTATCGGTACATAAGTG
1 TTGTATCGATACATAAGTG
719270 TTGTATCGATACA
1 TTGTATCGATACA
719283 ATGTATCGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
13 10 0.19
15 2 0.04
17 2 0.04
19 40 0.74
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:719247 original size:32 final size:32
Alignment explanation
Indices: 719201--719263 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
719191 AAACAGAAAT
719201 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
719233 TGTATCGATGCATAAGTGTTGTATCGGTACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
719264 TAAGTGTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:719353 original size:13 final size:13
Alignment explanation
Indices: 719335--719362 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
719325 ATTACTTAAA
719335 TGTATCGATACAT
1 TGTATCGATACAT
719348 TGTATCGATACAT
1 TGTATCGATACAT
719361 TG
1 TG
719363 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:720720 original size:15 final size:16
Alignment explanation
Indices: 720680--720713 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
720670 ACTTAAACTT
720680 AAAATAACCTGAATCC
1 AAAATAACCTGAATCC
*
720696 AAAATAACCTGAACCC
1 AAAATAACCTGAATCC
720712 AA
1 AA
720714 TTAACCTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.26, G:0.06, T:0.15
Consensus pattern (16 bp):
AAAATAACCTGAATCC
Found at i:721243 original size:21 final size:21
Alignment explanation
Indices: 721197--721246 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
721187 TAAACCTAGC
721197 TATATGTACATATAGCACAAT
1 TATATGTACATATAGCACAAT
* * * *
721218 AATATGTACATATGGCATACT
1 TATATGTACATATAGCACAAT
721239 TATATGTA
1 TATATGTA
721247 GCCATATCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (21 bp):
TATATGTACATATAGCACAAT
Found at i:731281 original size:13 final size:13
Alignment explanation
Indices: 731263--731289 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
731253 ACATTATGCT
731263 TTGTATCGATACA
1 TTGTATCGATACA
731276 TTGTATCGATACA
1 TTGTATCGATACA
731289 T
1 T
731290 ATTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:731298 original size:19 final size:19
Alignment explanation
Indices: 731273--731328 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
731263 TTGTATCGAT
*
731273 ACATTGTATCGATACATAT
1 ACATTGTATCGATACATAG
* * *
731292 TCATTGTATCAATACATGG
1 ACATTGTATCGATACATAG
731311 ACAATTGTATCGATACAT
1 AC-ATTGTATCGATACAT
731329 GAAACTGGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (19 bp):
ACATTGTATCGATACATAG
Found at i:731307 original size:32 final size:33
Alignment explanation
Indices: 731246--731308 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
731236 CACCCAGATA
* *
731246 TATCGATACATTATGCTTTGTATCGATACATTG
1 TATCGATACATTATGCATTGTATCAATACATTG
*
731279 TATCGATACA-TATTCATTGTATCAATACAT
1 TATCGATACATTATGCATTGTATCAATACAT
731309 GGACAATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (33 bp):
TATCGATACATTATGCATTGTATCAATACATTG
Found at i:737586 original size:13 final size:13
Alignment explanation
Indices: 737568--737593 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
737558 TACAGCAAGT
737568 ATGTATCGATACA
1 ATGTATCGATACA
737581 ATGTATCGATACA
1 ATGTATCGATACA
737594 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:739844 original size:21 final size:21
Alignment explanation
Indices: 739811--739855 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
739801 TTGTAAGTTG
*
739811 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
739833 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
739853 AAA
1 AAA
739856 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:741679 original size:15 final size:15
Alignment explanation
Indices: 741659--741689 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
741649 TAAAAATGTC
*
741659 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
741674 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
741689 C
1 C
741690 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:743778 original size:20 final size:20
Alignment explanation
Indices: 743699--743778 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
743689 AATGTCCAAA
*
743699 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
743719 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
743744 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
743764 TTGTATCGATACATT
1 ATGTATCGATACATT
743779 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:743782 original size:13 final size:13
Alignment explanation
Indices: 743764--743802 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
743754 ACATTTTTCT
743764 TTGTATCGATACA
1 TTGTATCGATACA
743777 TTGTATCGATACA
1 TTGTATCGATACA
*
743790 CTGTATCGATACA
1 TTGTATCGATACA
743803 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:743948 original size:21 final size:21
Alignment explanation
Indices: 743924--743970 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
743914 AAATCTTTTG
743924 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
743945 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
743965 CAAAAT
1 CAAAAT
743971 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:743967 original size:20 final size:19
Alignment explanation
Indices: 743926--743968 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
743916 ATCTTTTGCA
743926 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
743946 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
743966 AAA
1 AAA
743969 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:746359 original size:19 final size:19
Alignment explanation
Indices: 746335--746397 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
746325 TAGCCAAACT
746335 TGTATCGATACAGCAAGTA
1 TGTATCGATACAGCAAGTA
746354 TGTATCGAT--A-C-A--A
1 TGTATCGATACAGCAAGTA
746367 TGTATCGATACAGCAAGTA
1 TGTATCGATACAGCAAGTA
746386 TGTATCGATACA
1 TGTATCGATACA
746398 ATGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 10 0.26
15 2 0.05
16 2 0.05
17 2 0.05
19 22 0.58
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (19 bp):
TGTATCGATACAGCAAGTA
Found at i:746371 original size:13 final size:13
Alignment explanation
Indices: 746353--746410 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
746343 TACAGCAAGT
746353 ATGTATCGATACA
1 ATGTATCGATACA
746366 ATGTATCGATACAGCAA
1 ATGTATCGAT--A-C-A
746383 GTATGTATCGATACA
1 --ATGTATCGATACA
746398 ATGTATCGATACA
1 ATGTATCGATACA
746411 CAAAAAATTG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.59
15 2 0.05
16 2 0.05
17 2 0.05
19 10 0.26
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:746376 original size:32 final size:32
Alignment explanation
Indices: 746335--746410 Score: 152
Period size: 32 Copynumber: 2.4 Consensus size: 32
746325 TAGCCAAACT
746335 TGTATCGATACAGCAAGTATGTATCGATACAA
1 TGTATCGATACAGCAAGTATGTATCGATACAA
746367 TGTATCGATACAGCAAGTATGTATCGATACAA
1 TGTATCGATACAGCAAGTATGTATCGATACAA
746399 TGTATCGATACA
1 TGTATCGATACA
746411 CAAAAAATTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (32 bp):
TGTATCGATACAGCAAGTATGTATCGATACAA
Found at i:747520 original size:13 final size:13
Alignment explanation
Indices: 747502--747526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
747492 ACAACATTCC
747502 TTGTATCGATACA
1 TTGTATCGATACA
747515 TTGTATCGATAC
1 TTGTATCGATAC
747527 TTGGATTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:750043 original size:19 final size:20
Alignment explanation
Indices: 750019--750068 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
750009 CGATACCTTA
**
750019 TATCGATACATATTC-ATTG
1 TATCGATACATAGACAATTG
*
750038 TATCGATACATGGACAATTG
1 TATCGATACATAGACAATTG
750058 TATCGATACAT
1 TATCGATACAT
750069 GAAACTGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (20 bp):
TATCGATACATAGACAATTG
Done.