Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold350
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1036165
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 6 of 8
Found at i:751686 original size:20 final size:21
Alignment explanation
Indices: 751663--751719 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
751653 TACATATAAA
751663 AATGTATCGATACATTATG-C
1 AATGTATCGATACATTATGTC
* * *
751683 AATGTATTGATACATCATGTG
1 AATGTATCGATACATTATGTC
*
751704 AATGTATCAATACATT
1 AATGTATCGATACATT
751720 TCATTGGCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTATGTC
Found at i:752877 original size:37 final size:37
Alignment explanation
Indices: 752827--752907 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
752817 ATTATGAAGT
752827 ATGAAAAATAATCATAAATGGGCTACGTATTCCAAAG
1 ATGAAAAATAATCATAAATGGGCTACGTATTCCAAAG
752864 ATGAAAAATAATCATAAATGGGCTACGTATTCCAAAG
1 ATGAAAAATAATCATAAATGGGCTACGTATTCCAAAG
*
752901 AAGAAAA
1 ATGAAAA
752908 TCGGTGACAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.22
Consensus pattern (37 bp):
ATGAAAAATAATCATAAATGGGCTACGTATTCCAAAG
Found at i:757942 original size:48 final size:47
Alignment explanation
Indices: 757856--757947 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 47
757846 ATCCAGATTT
* *
757856 TTTTCCAGAATGTATCGATACAATGAAACTTGTGTCGATACATCTGGG
1 TTTTCCAGAATGTATCAATACAATGAAAC-TGTATCGATACATCTGGG
* *
757904 TTTTCCAGATTGTATCAATACAATTACTAA-TGTATCGATACATC
1 TTTTCCAGAATGTATCAATACAATGA--AACTGTATCGATACATC
757948 CTTTATATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 36 0.95
50 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (47 bp):
TTTTCCAGAATGTATCAATACAATGAAACTGTATCGATACATCTGGG
Found at i:760187 original size:20 final size:20
Alignment explanation
Indices: 760178--760254 Score: 118
Period size: 20 Copynumber: 3.8 Consensus size: 20
760168 TACATGTAAA
760178 AATGTATCGATACATTATGC
1 AATGTATCGATACATTATGC
760198 AATGTATCGATACATTATGC
1 AATGTATCGATACATTATGC
* *
760218 AATGTATCGATACATCATGTG
1 AATGTATCGATACATTATG-C
*
760239 AATGTATCAATACATT
1 AATGTATCGATACATT
760255 TCACTGGAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
20 38 0.73
21 14 0.27
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTATGC
Found at i:760208 original size:40 final size:41
Alignment explanation
Indices: 760162--760254 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 41
760152 CCTTTATTTC
*
760162 TATCGATACATGTA-AAAATGTATCGATACATTATG-CAATG
1 TATCGATACAT-TATAAAATGTATCGATACATCATGTCAATG
** *
760202 TATCGATACATTATGCAATGTATCGATACATCATGTGAATG
1 TATCGATACATTATAAAATGTATCGATACATCATGTCAATG
*
760243 TATCAATACATT
1 TATCGATACATT
760255 TCACTGGAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.04
40 29 0.63
41 15 0.33
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (41 bp):
TATCGATACATTATAAAATGTATCGATACATCATGTCAATG
Found at i:762643 original size:27 final size:27
Alignment explanation
Indices: 762612--762665 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
762602 TGGTGTTTTC
762612 AACCATCATAAGTGCCAAGTTGAAGCT
1 AACCATCATAAGTGCCAAGTTGAAGCT
762639 AACCATCATAAGTGCCAAGTTGAAGCT
1 AACCATCATAAGTGCCAAGTTGAAGCT
762666 CTGATACCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AACCATCATAAGTGCCAAGTTGAAGCT
Found at i:763431 original size:13 final size:13
Alignment explanation
Indices: 763413--763438 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
763403 TACGGCAAGT
763413 ATGTATCGATACA
1 ATGTATCGATACA
763426 ATGTATCGATACA
1 ATGTATCGATACA
763439 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:765657 original size:22 final size:22
Alignment explanation
Indices: 765605--765648 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
765595 AAAGCTCATG
765605 ATATAATTTACTTTTGGATAAA
1 ATATAATTTACTTTTGGATAAA
*
765627 ATATAATTTACTTTTTGATAAA
1 ATATAATTTACTTTTGGATAAA
765649 TTACTATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.48
Consensus pattern (22 bp):
ATATAATTTACTTTTGGATAAA
Found at i:765881 original size:16 final size:16
Alignment explanation
Indices: 765862--765892 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
765852 TGGATTCAGA
*
765862 TTCTTTCGAGTTCAAT
1 TTCTTTCAAGTTCAAT
765878 TTCTTTCAAGTTCAA
1 TTCTTTCAAGTTCAA
765893 ATTATTTCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (16 bp):
TTCTTTCAAGTTCAAT
Found at i:766440 original size:72 final size:72
Alignment explanation
Indices: 766323--766459 Score: 238
Period size: 72 Copynumber: 1.9 Consensus size: 72
766313 ATTTTTTAAA
766323 CTTTCTTGAACAAGAATAACTACTTCAGATATTCTAGGTGCACTTTTCCTTGCATTACTGCAACC
1 CTTTCTTGAACAAGAATAACTACTTCAGATATTCTAGGTGCACTTTTCCTTGCATTACTGCAACC
766388 TTTGAAG
66 TTTGAAG
** * *
766395 CTTTCTTGAACAAGAATTTCTACTTTAGATATTGTAGGTGCACTTTTCCTTGCATTACTGCAACC
1 CTTTCTTGAACAAGAATAACTACTTCAGATATTCTAGGTGCACTTTTCCTTGCATTACTGCAACC
766460 ATTCCTACGT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (72 bp):
CTTTCTTGAACAAGAATAACTACTTCAGATATTCTAGGTGCACTTTTCCTTGCATTACTGCAACC
TTTGAAG
Found at i:766936 original size:17 final size:15
Alignment explanation
Indices: 766905--766934 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
766895 CTAAGTTTTT
766905 AAATTTCAGTATATA
1 AAATTTCAGTATATA
766920 AAATTTCAGTATATA
1 AAATTTCAGTATATA
766935 TATATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
AAATTTCAGTATATA
Found at i:775386 original size:24 final size:24
Alignment explanation
Indices: 775359--775408 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
775349 CGTATCATTT
775359 TTTATATTAATATATATATATATA
1 TTTATATTAATATATATATATATA
* *
775383 TTTATATTAATATATTTTTATATA
1 TTTATATTAATATATATATATATA
775407 TT
1 TT
775409 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTATATTAATATATATATATATA
Found at i:775570 original size:16 final size:17
Alignment explanation
Indices: 775539--775600 Score: 60
Period size: 16 Copynumber: 3.8 Consensus size: 17
775529 TGTTTATATG
775539 AAAATATA-AAAT-TTT
1 AAAATATATAAATATTT
775554 AAAAT-TATAAATATTT
1 AAAATATATAAATATTT
* * *
775570 AATATCTA-AAATTTTT
1 AAAATATATAAATATTT
775586 AATAATATATAAATA
1 AA-AATATATAAATA
775601 AAATAAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 2 0.05
15 9 0.24
16 16 0.43
17 6 0.16
18 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATATATAAATATTT
Found at i:781752 original size:11 final size:11
Alignment explanation
Indices: 781736--781760 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
781726 TACGGGAATG
781736 GAGTTTTTGTT
1 GAGTTTTTGTT
781747 GAGTTTTTGTT
1 GAGTTTTTGTT
781758 GAG
1 GAG
781761 CTACGGGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.56
Consensus pattern (11 bp):
GAGTTTTTGTT
Found at i:782274 original size:20 final size:19
Alignment explanation
Indices: 782224--782301 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 19
782214 GGTAAAAAGA
782224 CATAATGTATCGATACATT
1 CATAATGTATCGATACATT
* *
782243 GCAGAATATATCGATACATT
1 -CATAATGTATCGATACATT
*
782263 CATACATGTATCGATATATT
1 CATA-ATGTATCGATACATT
* *
782283 AAAAAATGTATCGATACAT
1 -CATAATGTATCGATACAT
782302 CTGGGTAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 3 0.06
20 43 0.90
21 2 0.04
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (19 bp):
CATAATGTATCGATACATT
Found at i:782295 original size:40 final size:39
Alignment explanation
Indices: 782224--782301 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
782214 GGTAAAAAGA
** *
782224 CATAATGTATCGATACATTGCAGAATATATCGATACATT
1 CATAATGTATCGATACATTAAAAAATATATCGATACATT
* *
782263 CATACATGTATCGATATATTAAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTAAAAAATATATCGATACAT
782302 CTGGGTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTAAAAAATATATCGATACATT
Found at i:782940 original size:28 final size:28
Alignment explanation
Indices: 782886--783484 Score: 676
Period size: 28 Copynumber: 20.9 Consensus size: 28
782876 TTACTACTAG
** *
782886 CTTGTGGGCTTTGAAAAAAATGTCACTGA
1 CTTGTGGGCTTTG-AAAAGGTGCCACTGA
* *
782915 CTTGTGAGCTTTGAAAAGGTGTCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
*
782943 CTTGTGGGCTTTG-AAAGGATGCCACTAA
1 CTTGTGGGCTTTGAAAAGG-TGCCACTGA
*
782971 CTTGTGGGCTTTGAAAAAGTGCCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
*
782999 CTTGTGGGC-TTGAAAAAGTGCCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
* *
783026 CTTGTGGGCTTTGAAAGGAGTTGCCACCGA
1 CTTGTGGGCTTTGAAA--AGGTGCCACTGA
* * *
783056 CTTGTGTAGACTTTGAAAGGAGTACCACTGA
1 CTTGTG--GGCTTTGAAAAG-GTGCCACTGA
783087 CTTGTGTGGGCTTTG-AAAGGATGCCACTGA
1 C-T-TGTGGGCTTTGAAAAGG-TGCCACTGA
783117 CTTGTGGGCTTTG-AAAGAGTGCCACTGA
1 CTTGTGGGCTTTGAAAAG-GTGCCACTGA
* * *
783145 ATTGTGGGCTTCGAAAGGGTGCCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
* *
783173 CTTGTGGGCTTTAAAAAGGTACCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
* *
783201 CTCGTGGGC-TTGAAAGGGTGCCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
* * *
783228 CTCGTGGGC-TTGAAAGGGTGCCATTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
783255 CTTGTGGGCTTTGAAAAGAGTGCCACTGA
1 CTTGTGGGCTTTGAAAAG-GTGCCACTGA
783284 CTTGTGGGCTTTG-AAAGAGTGCCACTGA
1 CTTGTGGGCTTTGAAAAG-GTGCCACTGA
783312 CTTGTGGGC-TTGAAAAGGTGCCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
*
783339 CTCGTGGGCTTTGAAAAGGTGCCACTGA
1 CTTGTGGGCTTTGAAAAGGTGCCACTGA
*
783367 CTCGTGGGCTTTGAAAAGAGTGCCACTGA
1 CTTGTGGGCTTTGAAAAG-GTGCCACTGA
* * *
783396 CTTGTGGGTTTTGAAAGGAGTTGCCACCGA
1 CTTGTGGGCTTTGAAA--AGGTGCCACTGA
*
783426 CTTGTGTGGGCTTTGAAAGGAGTGCCACTGA
1 C-T-TGTGGGCTTTGAAAAG-GTGCCACTGA
783457 CTTGTGTGGGCTTTG-AAAGGATGCCACT
1 C-T-TGTGGGCTTTGAAAAGG-TGCCACT
783485 CTAAACAGAA
Statistics
Matches: 501, Mismatches: 45, Indels: 47
0.84 0.08 0.08
Matches are distributed among these distances:
27 102 0.20
28 215 0.43
29 69 0.14
30 48 0.10
31 40 0.08
32 23 0.05
33 4 0.01
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (28 bp):
CTTGTGGGCTTTGAAAAGGTGCCACTGA
Found at i:784704 original size:1 final size:1
Alignment explanation
Indices: 784700--784747 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
784690 TTTTTTGCTA
* * * * *
784700 TTTTTTCTTTTTTTTTTGTTTTTTTTGTTTTGTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
784748 AGGGTGTAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (1 bp):
T
Found at i:784712 original size:9 final size:9
Alignment explanation
Indices: 784684--784747 Score: 60
Period size: 9 Copynumber: 7.3 Consensus size: 9
784674 ATCTAGACCC
784684 TTTTCTTTT
1 TTTTCTTTT
* *
784693 TTTGCTATT
1 TTTTCTTTT
784702 TTTTCTTTT
1 TTTTCTTTT
*
784711 TTTT-TTGT
1 TTTTCTTTT
*
784719 TTTT-TTTG
1 TTTTCTTTT
*
784727 TTTTGTTTT
1 TTTTCTTTT
*
784736 TTTTGTTTT
1 TTTTCTTTT
784745 TTT
1 TTT
784748 AGGGTGTAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
8 13 0.28
9 33 0.72
ACGTcount: A:0.02, C:0.05, G:0.08, T:0.86
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:784713 original size:21 final size:20
Alignment explanation
Indices: 784689--784737 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
784679 GACCCTTTTC
784689 TTTTTTTGCTATTTTTTCTTT
1 TTTTTTTG-TATTTTTTCTTT
* *
784710 TTTTTTTGTTTTTTTTGTTT
1 TTTTTTTGTATTTTTTCTTT
784730 TGTTTTTT
1 T-TTTTTT
784738 TTGTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.86
Consensus pattern (20 bp):
TTTTTTTGTATTTTTTCTTT
Found at i:784721 original size:18 final size:17
Alignment explanation
Indices: 784684--784747 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
784674 ATCTAGACCC
*
784684 TTTTCTTTTTTTGCTATT
1 TTTTCTTTTTTTG-TTTT
784702 TTTTCTTTTTTT-TTTGT
1 TTTTCTTTTTTTGTTT-T
784719 TTTT-TTTGTTTTGTTTT
1 TTTTCTTT-TTTTGTTTT
*
784736 TTTTGTTTTTTT
1 TTTTCTTTTTTT
784748 AGGGTGTAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
16 5 0.12
17 18 0.44
18 18 0.44
ACGTcount: A:0.02, C:0.05, G:0.08, T:0.86
Consensus pattern (17 bp):
TTTTCTTTTTTTGTTTT
Found at i:784730 original size:14 final size:14
Alignment explanation
Indices: 784689--784744 Score: 69
Period size: 14 Copynumber: 3.9 Consensus size: 14
784679 GACCCTTTTC
784689 TTTTTTTGCTATTT-T
1 TTTTTTTG-T-TTTGT
*
784704 TTCTTTTTTTTTTGT
1 TT-TTTTTGTTTTGT
784719 TTTTTTTGTTTTGT
1 TTTTTTTGTTTTGT
784733 TTTTTTTGTTTT
1 TTTTTTTGTTTT
784745 TTTAGGGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
14 26 0.70
15 6 0.16
16 5 0.14
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.86
Consensus pattern (14 bp):
TTTTTTTGTTTTGT
Found at i:794477 original size:19 final size:19
Alignment explanation
Indices: 794453--794492 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
794443 AAATAATGGG
*
794453 AATGAATAGCAAGAAAAAA
1 AATGAACAGCAAGAAAAAA
* *
794472 AATGAACATCAATAAAAAA
1 AATGAACAGCAAGAAAAAA
794491 AA
1 AA
794493 ATGACCCTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.12
Consensus pattern (19 bp):
AATGAACAGCAAGAAAAAA
Found at i:798763 original size:20 final size:19
Alignment explanation
Indices: 798713--798790 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 19
798703 TGGTAAAAGA
798713 CATAATGTATCGATACATT
1 CATAATGTATCGATACATT
* *
798732 GCAGAATATATCGATACATT
1 -CATAATGTATCGATACATT
*
798752 CATACATGTATCGATATATT
1 CATA-ATGTATCGATACATT
* *
798772 AAAAAATGTATCGATACAT
1 -CATAATGTATCGATACAT
798791 CTGGGTAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 3 0.06
20 43 0.90
21 2 0.04
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (19 bp):
CATAATGTATCGATACATT
Found at i:798784 original size:40 final size:39
Alignment explanation
Indices: 798713--798790 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
798703 TGGTAAAAGA
** *
798713 CATAATGTATCGATACATTGCAGAATATATCGATACATT
1 CATAATGTATCGATACATTAAAAAATATATCGATACATT
* *
798752 CATACATGTATCGATATATTAAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTAAAAAATATATCGATACAT
798791 CTGGGTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTAAAAAATATATCGATACATT
Found at i:800121 original size:21 final size:22
Alignment explanation
Indices: 800097--800137 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
800087 TTTTGCCAAA
800097 ATGTATCGATAC-ATGCCCTTG
1 ATGTATCGATACAATGCCCTTG
800118 ATGTATCGATACAATGCCCT
1 ATGTATCGATACAATGCCCT
800138 AACGGTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (22 bp):
ATGTATCGATACAATGCCCTTG
Found at i:800192 original size:20 final size:20
Alignment explanation
Indices: 800167--800254 Score: 84
Period size: 20 Copynumber: 4.8 Consensus size: 20
800157 TTTTCACAAT
*
800167 TTGTATCGATACATT-TTGCA
1 TTGTATCGATACATTGCT-CA
800187 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGCTCA
*
800207 TTATATCGAT--A-----CA
1 TTGTATCGATACATTGCTCA
*
800220 TTGTATCGATATATTGCTCA
1 TTGTATCGATACATTGCTCA
800240 TTGTATCGATACATT
1 TTGTATCGATACATT
800255 TTATAATGTA
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
13 11 0.20
15 1 0.02
18 1 0.02
20 42 0.75
21 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGCTCA
Found at i:800227 original size:33 final size:33
Alignment explanation
Indices: 800185--800254 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
800175 ATACATTTTG
800185 CATTGTATCGATACATTGCTCATTATATCGATA
1 CATTGTATCGATACATTGCTCATTATATCGATA
* *
800218 CATTGTATCGATATATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTATATCGATA
800251 CATT
1 CATT
800255 TTATAATGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTATATCGATA
Found at i:802737 original size:51 final size:51
Alignment explanation
Indices: 802649--802765 Score: 141
Period size: 51 Copynumber: 2.3 Consensus size: 51
802639 TATTTCCGAG
* * *
802649 GGGAAACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTT-TCATAATT-
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCT-ATAATTA
* *
802699 GGAGATACTCCAACTCCGATTTTATTT-TCAAAACACCAATTTTCTATATTTA
1 GG-GATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTCTATAATTA
802751 GGGATACTCCAACCC
1 GGGATACTCCAACCC
802766 TGTTATTTCC
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
50 3 0.05
51 51 0.89
52 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCTATAATTA
Found at i:802872 original size:130 final size:129
Alignment explanation
Indices: 802621--802898 Score: 332
Period size: 130 Copynumber: 2.1 Consensus size: 129
802611 TTTTTCATCG
* *
802621 GGGATACTTCAACCCCATTATTTCCGAGGGGAAACTCCAACCCCGGTTTTATTTCTAAAATACCA
1 GGGATACTCCAACCCCATTATTTCCGAGGGGAAACTCCAACCCCGATTTTATTTCTAAAATACCA
* * * *
802686 ATTTTTCATAATTGGAGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATATTTA
66 ATTTTTCATAATAGGAGATACTCCAACTCCGATTTTACTTCCAAAACACCAATTTTC-ATAATTA
** *
802751 GGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGATTTTAGTTTC-AAAATACC
1 GGGATACTCCAACCCCATTATTTCCGAGGGGAAACTCCAACCCCGATTTTA-TTTCTAAAATACC
* * * *
802815 GA-TTTTCAATAATCAGG-GATACTCCAAC-CTCGA-TTTACTTCCACAATACCGATTTTTCATA
65 AATTTTTC-ATAAT-AGGAGATACTCCAACTC-CGATTTTACTTCCAAAACACC-AATTTTCATA
*
802876 ATTG
126 ATTA
*
802880 GGGATACTCCAGCCCCATT
1 GGGATACTCCAACCCCATT
802899 GTTATCTCCA
Statistics
Matches: 126, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
129 40 0.32
130 80 0.63
131 6 0.05
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (129 bp):
GGGATACTCCAACCCCATTATTTCCGAGGGGAAACTCCAACCCCGATTTTATTTCTAAAATACCA
ATTTTTCATAATAGGAGATACTCCAACTCCGATTTTACTTCCAAAACACCAATTTTCATAATTA
Found at i:802884 original size:50 final size:51
Alignment explanation
Indices: 802778--802913 Score: 154
Period size: 50 Copynumber: 2.7 Consensus size: 51
802768 TTATTTCCGA
* *
802778 GGGGATACTCCAACCCCGATTTTAGTTTCAAAATACCGATTTTCAATAATC
1 GGGGATACTCCAACCCCGATTTTACTTCCAAAATACCGATTTTCAATAATC
* * * *
802829 AGGGATACTCCAACCTCGA-TTTACTTCCACAATACCGATTTTTC-ATAATT
1 GGGGATACTCCAACCCCGATTTTACTTCCAAAATACCGA-TTTTCAATAATC
*
802879 GGGGATACTCCAGCCCC-ATTGTTA-TCTCCAAAATA
1 GGGGATACTCCAACCCCGATT-TTACT-TCCAAAATA
802914 TTAAATTTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
49 1 0.01
50 37 0.52
51 33 0.46
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTACTTCCAAAATACCGATTTTCAATAATC
Found at i:809176 original size:61 final size:58
Alignment explanation
Indices: 809055--809252 Score: 261
Period size: 60 Copynumber: 3.3 Consensus size: 58
809045 TAGCCCTTCC
* *
809055 AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGAC-CC-TTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT
*
809116 AGTCCTCAAAGAACAGGACACCTGTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGAC-CCT-TTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * *
809177 AGTCCTCAAAGAGCAGGACGCTTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCT
1 AGTCCTCAAAGAGCAGGACCCTTTC-CTTTTAAAGCCCACACAAGTTGGTGGCACCT-TT
809237 AGTCCTCAAAGAGCAG
1 AGTCCTCAAAGAGCAG
809253 TAGGCACTTT
Statistics
Matches: 124, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
59 6 0.05
60 68 0.55
61 50 0.40
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (58 bp):
AGTCCTCAAAGAGCAGGACCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:809303 original size:43 final size:43
Alignment explanation
Indices: 809238--809681 Score: 383
Period size: 43 Copynumber: 10.4 Consensus size: 43
809228 GCACCTCCTA
* * *
809238 GTCCTCAAAGAGCAGTAGGCACTTTATTTTCTTCTTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTCCCCTTT
* * * * *
809281 GTCCTCATAGAGCATGATGCAC------TTCAT-TTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTCCCCTTT
* * *
809317 GTCCTCAAAGAGTAGGACACACTTTATTTTCCTT-TTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTT-CTTCTTCCCCTTT
** * * * *
809360 ACCCTCAAAAAGCAGGATGCACTTTATTTTCCTCTTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTCCCCTTT
* * * *
809403 GTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCTTC--TTCCCCTTT
*
809448 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTT-TTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTT-CTTCTTCCCCTTT
* * *
809491 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTCCCCTTT
* * *
809534 GTCCTCAACGAGCAGGACGCACTTCA-TTTCTTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTC-TTC--TTCCCCTTT
* * * *
809579 GTCCTTAAAGAGCAGGACGCTCTTTATTTTCCTT-TTCTCATTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTT-CTTCTTCCCCTTT
* * * *
809622 GTCTTCAAAGAGTA-GATGCACTTTATTTTCCTT-TTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTT-CTTCTTCCCCTTT
*
809664 GTCCTCAAAGAGGAGGAC
1 GTCCTCAAAGAGCAGGAC
809682 ACGTTCCATT
Statistics
Matches: 319, Mismatches: 64, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
36 24 0.08
37 4 0.01
42 47 0.15
43 172 0.54
45 63 0.20
46 8 0.03
47 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.38
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTCCCCTTT
Found at i:809470 original size:88 final size:87
Alignment explanation
Indices: 809307--809733 Score: 418
Period size: 88 Copynumber: 4.9 Consensus size: 87
809297 ATGCACTTCA
* * * ** *
809307 TTTCCCTTTTGTCCTCAAAGAGTAGGACACACTTTATTT-TCCTTTTCTCC-TTTACCCTCAAAA
1 TTTCCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCTTCTTTTC-CCTTTTGTCCTCAAAG
*
809370 AGCAGGATGCACTTTATTTTCCT
65 AGCAGGACGCACTTTATTTTCCT
* * *
809393 CTTCCCCCTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAG
1 TTTCCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTT-CTTCTTTTCCCTTTTGTCCTCAAAG
809458 AGCAGGACGCACTTTATTTTCCT
65 AGCAGGACGCACTTTATTTTCCT
* ** * * ** *
809481 TTTCTCCTTTGTCCTCAAAGAGCAGGATGCACTTTATTT-TCCTCTTCCCCCTTGTCCTCAACGA
1 TTTCCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCTTCTTTTCCCTTTTGTCCTCAAAGA
* *
809545 GCAGGACGCACTTCATTTCTTTCT
66 GCAGGACGCACTTTA-TT-TTCCT
* * * * * * * *
809569 TTTCCCTTTTGTCCTTAAAGAGCAGGACGCTCTTTATTT-TCCTTTTCTCATTTGTCTTCAAAGA
1 TTTCCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCTTCTTTTCCCTTTTGTCCTCAAAGA
* *
809633 GTA-GATGCACTTTATTTTCCT
66 GCAGGACGCACTTTATTTTCCT
* * * * * *
809654 TTTCTCCTTTGTCCTCAAAGAGGAGGACAC-GTTCCATTTCTTTCTTTTCTCCTTTAGCCCTCAA
1 TTTCCCCTTTGTCCTCAAAGAGCAGGACACACTT-TATTTC-TTCTTTTC-CCTTTTGTCCTCAA
809718 AGAGCAGGACGC-CTTT
63 AGAGCAGGACGCACTTT
809734 CAAAGCCCAC
Statistics
Matches: 278, Mismatches: 53, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
84 2 0.01
85 33 0.12
86 70 0.25
87 20 0.07
88 149 0.54
89 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.39
Consensus pattern (87 bp):
TTTCCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCTTCTTTTCCCTTTTGTCCTCAAAGA
GCAGGACGCACTTTATTTTCCT
Found at i:809541 original size:131 final size:131
Alignment explanation
Indices: 809302--809733 Score: 627
Period size: 131 Copynumber: 3.3 Consensus size: 131
809292 GCATGATGCA
* * * **
809302 CTTCATTTCCCTTTTGTCCTCAAAGAGTAGGACACACTTTATTTTCCTTTTCTCCTTTACCCTCA
1 CTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCA
*
809367 AAAAGCAGGATGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACACACTTCATTT
66 AAGAGCAGGATGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACACACTTCATTT
809432 C
131 C
809433 CTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCA
1 CTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCA
* *
809498 AAGAGCAGGATGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAACGAGCAGGACGCACTTCATTT
66 AAGAGCAGGATGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACACACTTCATTT
809563 C
131 C
* * * * *
809564 TTTCTTTTCCCTTTTGTCCTTAAAGAGCAGGACGCTCTTTATTTTCCTTTTCTCATTTGTCTTCA
1 CTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCA
* * * * * *
809629 AAGAGTA-GATGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGGAGGACAC-GTTCCATT
66 AAGAGCAGGATGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACACACTT-CATT
809692 TC
130 TC
* * *
809694 TTTCTTTTCTCCTTTAGCCCTCAAAGAGCAGGACGC-CTTT
1 CTTCTTTTC-CCTTTTGTCCTCAAAGAGCAGGACGCACTTT
809734 CAAAGCCCAC
Statistics
Matches: 275, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
129 2 0.01
130 61 0.22
131 212 0.77
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.39
Consensus pattern (131 bp):
CTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTCA
AAGAGCAGGATGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACACACTTCATTT
C
Found at i:809891 original size:61 final size:61
Alignment explanation
Indices: 809729--809920 Score: 260
Period size: 61 Copynumber: 3.1 Consensus size: 61
809719 GAGCAGGACG
*
809729 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAAGTCCTCAAAGAGCAGGACTGCCTTT-T
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTCAGTCCTCAAAGAGCAGGA-TG-CTTTCT
* *
809792 CTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCGGGATGCTTTCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
* ** * * * *
809853 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAGGAGCAAGACGCTCTCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
809914 CCTTTCA
1 CCTTTCA
809921 CCCTTTAGTC
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
60 4 0.03
61 62 0.53
62 22 0.19
63 28 0.24
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (61 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
Found at i:810038 original size:55 final size:54
Alignment explanation
Indices: 809927--810114 Score: 198
Period size: 55 Copynumber: 3.3 Consensus size: 54
809917 TTCACCCTTT
* * * *
809927 AGTCCTTAAAGAGCAGGATGCCTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTAAAGCCCACACAAGTTAGTGGCACTTCCC
* *
809981 AGTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACGAGTTAGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGATGCC-TTTAAAGCCCACACAAGTTAGTGGCACTTCCC
* * * *
810036 AGTCCTCAAAGAGCAGAACGCCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CT
1 AGTCCTCAAAGAGCAG---G-ATGC-C--TTTAAAGCCCACACAAGTTAGTGGCA-CTTCCC
810097 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
810115 CATCTTTTCT
Statistics
Matches: 113, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
54 20 0.18
55 43 0.38
58 2 0.02
59 2 0.02
60 1 0.01
61 42 0.37
62 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (54 bp):
AGTCCTCAAAGAGCAGGATGCCTTTAAAGCCCACACAAGTTAGTGGCACTTCCC
Found at i:810074 original size:209 final size:215
Alignment explanation
Indices: 809704--810111 Score: 560
Period size: 209 Copynumber: 1.9 Consensus size: 215
809694 TTTCTTTTCT
*
809704 CCTTTAGCCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAAGTC
1 CCTTTAGCCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAAGTC
* * **
809769 CTCAAAGAGCAGGACTGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTC
66 CTCAAAGAGCAGGACTGCC---TCTTTTCAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTC
* * * * *
809834 AAAGAGCGGGATGCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAG
128 AAAGAGCAGAACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAA
809898 GAGCAAGACGCTCTCTCCTTTCAC
192 GAGCAAGACGCTCTCTCCTTTCAC
* * * *
809922 CCTTTAGTCCTTAAAGAGCAGGATGCCTTT-AAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTC
1 CCTTTAGCCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAAGTC
* *
809985 CTCAAAGAGTAGGA-TG-C-CTTTT-AAAGCCCACACGAGTTAGTGGCACTTCCCAGTCCTCAAA
66 CTCAAAGAGCAGGACTGCCTCTTTTCAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAA
* * *
810046 GAGCAGAACGCCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGC
131 GAGCAGAACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC
810111 A
196 A
810112 GGACATCTTT
Statistics
Matches: 170, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
209 88 0.52
210 8 0.05
214 1 0.01
215 2 0.01
216 21 0.12
217 23 0.14
218 27 0.16
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (215 bp):
CCTTTAGCCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAAGTC
CTCAAAGAGCAGGACTGCCTCTTTTCAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAA
GAGCAGAACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC
AAGACGCTCTCTCCTTTCAC
Found at i:810183 original size:61 final size:61
Alignment explanation
Indices: 809952--810190 Score: 256
Period size: 61 Copynumber: 4.0 Consensus size: 61
809942 GGATGCCTTT
* * * * *
809952 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGATG-C----CTTTT-
1 AAAGCCCACACGAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC
* * * * * *
810007 AAAGCCCACACGAGTTAGTGGCACTTCCCAGTCCTCAAAGAGCAGAACGCCTTCTCTTTTT
1 AAAGCCCACACGAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC
* * **
810068 AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACATCTTTTCTTTTC
1 AAAGCCCACACGAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC
* * * *
810129 GAAGCCCACATGATTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTC
1 AAAGCCCACACGAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTC
810191 TCCTTTGTCC
Statistics
Matches: 152, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
55 42 0.28
56 1 0.01
60 5 0.03
61 98 0.64
62 6 0.04
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (61 bp):
AAAGCCCACACGAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC
Found at i:810886 original size:13 final size:13
Alignment explanation
Indices: 810870--810899 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
810860 ATACATTGTT
810870 CATTGTATCGATA
1 CATTGTATCGATA
*
810883 CATTTTATCGATA
1 CATTGTATCGATA
810896 CATT
1 CATT
810900 CTGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:810944 original size:20 final size:20
Alignment explanation
Indices: 810915--811008 Score: 127
Period size: 20 Copynumber: 4.7 Consensus size: 20
810905 TTTACTCAGA
810915 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTTGCAT
*
810935 TGTATTGATACATTTTGCAT
1 TGTATCGATACATTTTGCAT
*
810955 TGTATCGATACATTGCT-CAT
1 TGTATCGATACATT-TTGCAT
* * *
810975 TGTATTGATACATTTTACAA
1 TGTATCGATACATTTTGCAT
810995 TGTATCGATACATT
1 TGTATCGATACATT
811009 CAGGCATTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
19 1 0.02
20 63 0.97
21 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTTTGCAT
Found at i:810976 original size:40 final size:40
Alignment explanation
Indices: 810914--811009 Score: 149
Period size: 40 Copynumber: 2.4 Consensus size: 40
810904 GTTTACTCAG
* *
810914 ATGTATCGATACATTTTGCATTGTATTGATACATTTTGCA
1 ATGTATCGATACATTCTGCATTGTATTGATACATTTTACA
*
810954 TTGTATCGATACATTGCT-CATTGTATTGATACATTTTACA
1 ATGTATCGATACATT-CTGCATTGTATTGATACATTTTACA
810994 ATGTATCGATACATTC
1 ATGTATCGATACATTC
811010 AGGCATTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.02
40 49 0.96
41 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (40 bp):
ATGTATCGATACATTCTGCATTGTATTGATACATTTTACA
Found at i:813492 original size:51 final size:51
Alignment explanation
Indices: 813402--813498 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
813392 CAAACCCCGG
*
813402 TTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAACTCCAA
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACTCCAA
* * *
813453 TTTTATTT-TCAAAACACCAA-TTTTCTATAATTAGTGATACTCCAAC
1 TTTTATTTCT-AAAACACCAATTTTTC-ACAATCAGGGATACTCCAAC
813499 ACTGTTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
50 6 0.15
51 34 0.85
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (51 bp):
TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACTCCAA
Found at i:813613 original size:79 final size:77
Alignment explanation
Indices: 813437--813654 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 77
813427 CACAATCGGG
* * * *
813437 GATACTCCAACTCCAATTTTATTTTCAAAACACCAATTTTCTATAATTAGTGATACTCCAACACT
1 GATACTCCAAC-CCGATTTTATTTT-AAAATACCGATTTTCTATAATTAGGGATACTCCAACACT
* *
813502 GTTATTTCCGAGGG
64 ATTATTTCCGAGGA
*
813516 GATACTCCAACCCCGATTTTAGTTTTAAAATACCGATTTTCTATAATTAGGGATACTCCAACCCT
1 GATACTCCAA-CCCGATTTTA-TTTTAAAATACCGATTTTCTATAATTAGGGATACTCCAACACT
813581 ATTATTTCCGAGGA
64 ATTATTTCCGAGGA
** **
813595 GATACTCCAACCCTGATTTTACTTCCAAAATACCGATTTT-TCATAATCGGGGATACTCCA
1 GATACTCCAACCC-GATTTTA-TTTTAAAATACCGATTTTCT-ATAATTAGGGATACTCCA
813655 GCCCCATTGT
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 4 0.03
79 114 0.93
80 5 0.04
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (77 bp):
GATACTCCAACCCGATTTTATTTTAAAATACCGATTTTCTATAATTAGGGATACTCCAACACTAT
TATTTCCGAGGA
Found at i:826889 original size:79 final size:78
Alignment explanation
Indices: 826758--827592 Score: 788
Period size: 79 Copynumber: 10.6 Consensus size: 78
826748 TCATTCATGT
* * * * * *
826758 TTTTATTTCTAAAATACCGATTTTCCACTATCGGGGATACTTCAACCCTGTTATTTTCAAGGAGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAA-CCTGTTATTTTCGAGGGGA
*
826823 TACTTCAACCCCGA
65 TACTCCAACCCCGA
* * * *
826837 TTTTATTTCCAAAACATCGATTTTCCATCATCGGAGATACTCCAATCCTGTTATTTTCGAGAGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAA-CCTGTTATTTTCGAGGGGA
* *
826902 TACTCCAACCCTGG
65 TACTCCAACCCCGA
* ** * * **
826916 TTTTATTT-TCAGAACA-CTGATTTTCCATAATCGGAGATACTTCAACCCCATTA-TTTCGAGGG
1 TTTTATTTCT-AAAACATC-GATTTTCCACCATCGGGGATACTCCAA-CCTGTTATTTTCGAGGG
*
826978 GATACTCCAACCTCGA
63 GATACTCCAACCCCGA
* * * * *
826994 TTTTATTTCTAAAACA-CTAATTTTCTAACATC-GAGATACTCCAACCTCGTTGTTTTCGAGGGG
1 TTTTATTTCTAAAACATC-GATTTTCCACCATCGGGGATACTCCAACCT-GTTATTTTCGAGGGG
* *
827057 ACACTCCAACCCCAGG
64 ATACTCCAACCCC-GA
* * * * *
827073 TTTTATTTCTAAAACATCAATTTTTCACAATCAGGGATACTCCAACCCTGTTATTGTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAA-CCTGTTATTTTCGAGGGGA
* *
827138 TACTCCAACCTCGG
65 TACTCCAACCCCGA
* ** **
827152 TTTGT-TTTCTAAAATATCGATTTTCTGCCATCGGGGATACTCCAACCTCGTTATTTTTAAGGGG
1 TTT-TATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCT-GTTATTTTCGAGGGG
827216 ATACTCCAACCCCGA
64 ATACTCCAACCCCGA
* * * * * *
827231 TTTTGTTTCCAAAATATCGACTTTT-CACCATCGGGGGTTCTCCAACCTCGTTATTTTTGAGGGG
1 TTTTATTTCTAAAACATCGA-TTTTCCACCATCGGGGATACTCCAACCT-GTTATTTTCGAGGGG
827295 ATACTCCAACCCCGA
64 ATACTCCAACCCCGA
* * * * * *
827310 TTTTGTTTCCAAAATATCGACTTTT-CACCATCGGGGGTTCTCCAACCTCGTTATTTTCGAGGGA
1 TTTTATTTCTAAAACATCGA-TTTTCCACCATCGGGGATACTCCAACCT-GTTATTTTCGAGGGG
827374 ATACTCCAACCCCGA
64 ATACTCCAACCCCGA
* * * * *
827389 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCTAACCCCGTTGTTTTCAAGGGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAA-CCTGTTATTTTCGAGGGGA
* *
827454 TACTCCAACCTCGG
65 TACTCCAACCCCGA
* * * * ** *
827468 TTTTATTTTTAAAACACCAATTTTACATAATCGGGGATACTCCAACCTTGTTATTTTCGA-AGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACC-TGTTATTTTCGAGGGGA
* *
827532 TACTCTAACCCCGG
65 TACTCCAACCCCGA
* * * ** *
827546 CTTTATTTCTAAAACATTGATTTTTCATAATCGAGGATACTCCAACC
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACC
827593 CTGGTTTTAT
Statistics
Matches: 642, Mismatches: 98, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
76 2 0.00
77 13 0.02
78 133 0.21
79 448 0.70
80 43 0.07
81 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (78 bp):
TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCTGTTATTTTCGAGGGGAT
ACTCCAACCCCGA
Found at i:827175 original size:158 final size:157
Alignment explanation
Indices: 826758--827595 Score: 877
Period size: 158 Copynumber: 5.3 Consensus size: 157
826748 TCATTCATGT
* * * * * * *
826758 TTTTATTTCTAAAATACCGATTTTCCACTATCGGGGATACTTCAACCCTGTTATTTTCAAGGAGA
1 TTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGA
* * * * *
826823 TACTTCAACCCCGATTTTATTTCCAAAACATCGATTTTCCATCATCGGAGATACTCCAATCCT-G
66 TACTCCAACCTCGATTTTATTTCTAAAACATCGATTTT-CAACATCGGGGATACTCCAA-CCTCG
* *
826887 TTATTTTCGAGAGGATACTCCAACCCTGG
129 TTATTTTCGAGGGGATACTCCAACCCCGG
* * * * * **
826916 TTTTATTT-TCAGAACA-CTGATTTTCCATAATCGGAGATACTTCAACCCCATTA-TTTCGAGGG
1 TTTTATTTCT-AAAACATC-GATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCGAGGG
* *
826978 GATACTCCAACCTCGATTTTATTTCTAAAACA-CTAATTTTCTAACATC-GAGATACTCCAACCT
64 GATACTCCAACCTCGATTTTATTTCTAAAACATC-GATTTTC-AACATCGGGGATACTCCAACCT
* *
827041 CGTTGTTTTCGAGGGGACACTCCAACCCCAGG
127 CGTTATTTTCGAGGGGATACTCCAACCCC-GG
* * *
827073 TTTTATTTCTAAAACATCAATTTTTCACAATCAGGGATACTCCAACCCTGTTATTGTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGA
* * **
827138 TACTCCAACCTCGGTTTGT-TTTCTAAAATATCGATTTTCTGCCATCGGGGATACTCCAACCTCG
66 TACTCCAACCTCGATTT-TATTTCTAAAACATCGATTTTC-AACATCGGGGATACTCCAACCTCG
** *
827202 TTATTTTTAAGGGGATACTCCAACCCCGA
129 TTATTTTCGAGGGGATACTCCAACCCCGG
* * * * * * * *
827231 TTTTGTTTCCAAAATATCGACTTTTCACCATCGGGGGTTCTCCAA-CCTCGTTATTTTTGAGGGG
1 TTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCT-GTTATTTTCGAGGGG
* * * * * * *
827295 ATACTCCAACCCCGATTTTGTTTCCAAAATATCGACTTTTCACCATCGGGGGTTCTCCAACCTCG
65 ATACTCCAACCTCGATTTTATTTCTAAAACATCGA-TTTTCAACATCGGGGATACTCCAACCTCG
* *
827360 TTATTTTCGAGGGAATACTCCAACCCCGA
129 TTATTTTCGAGGGGATACTCCAACCCCGG
* * * * *
827389 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCTAACCCCGTTGTTTTCAAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGA
* * * * *
827454 TACTCCAACCTCGGTTTTATTTTTAAAACACCAATTTTACATA-ATCGGGGATACTCCAACCTTG
66 TACTCCAACCTCGATTTTATTTCTAAAACATCGATTTT-CA-ACATCGGGGATACTCCAACCTCG
* *
827518 TTATTTTCGA-AGGATACTCTAACCCCGG
129 TTATTTTCGAGGGGATACTCCAACCCCGG
* * * *
827546 CTTTATTTCTAAAACATTGATTTTTCATAATCGAGGATACTCCAACCCTG
1 TTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTG
827596 GTTTTATTTC
Statistics
Matches: 569, Mismatches: 93, Indels: 37
0.81 0.13 0.05
Matches are distributed among these distances:
155 3 0.01
156 38 0.07
157 155 0.27
158 325 0.57
159 48 0.08
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (157 bp):
TTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGA
TACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCAACATCGGGGATACTCCAACCTCGTT
ATTTTCGAGGGGATACTCCAACCCCGG
Found at i:827645 original size:51 final size:51
Alignment explanation
Indices: 827528--827646 Score: 184
Period size: 51 Copynumber: 2.3 Consensus size: 51
827518 TTATTTTCGA
* * * *
827528 AGGATACTCTAACCCCGGCTTTATTTCTAAAACATTGATTTTTCATAATCG
1 AGGATACTCCAACCCTGGCTTTATTTCTAAAACATCGATTTTTCACAATCG
* *
827579 AGGATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCG
1 AGGATACTCCAACCCTGGCTTTATTTCTAAAACATCGATTTTTCACAATCG
827630 AGGATACTCCAACCCTG
1 AGGATACTCCAACCCTG
827647 TTATTTTCGA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (51 bp):
AGGATACTCCAACCCTGGCTTTATTTCTAAAACATCGATTTTTCACAATCG
Found at i:827709 original size:129 final size:128
Alignment explanation
Indices: 827451--827733 Score: 329
Period size: 129 Copynumber: 2.2 Consensus size: 128
827441 GTTTTCAAGG
* * * *
827451 GGATACTCCAACCTCGGTTTTATTTTTAAAACACCAATTTTACATAATCGGGGATACTCCAACCT
1 GGATACTCCAACCT-GGTTTTATTTCTAAAACACCAATTTTACACAATCGAGGATACTCCAACCC
* * ** *
827516 TGTTATTTTCGAAGGATACTCTAACCCCGGCTTTATTTCTAAAACATTGATTTTTCATAATCGA
65 TGTTATTTTCGAAGGATACTCTAACCCCGACTTTATTTCCAAAACATCAACTTTTCATAATCGA
* * * *
827580 GGATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCGAGGATACTCCAACCC
1 GGATACTCCAA-CCTGGTTTTATTTCTAAAACACCAATTTTACACAATCGAGGATACTCCAACCC
* * * * **
827645 TGTTATTTTCGAGGAGATACTCTAACCCCGATTTTGTTTCCAAAATATCAACTTTTCA-CCTCGA
65 TGTTATTTTCGAAG-GATACTCTAACCCCGACTTTATTTCCAAAACATCAACTTTTCATAATCGA
*
827709 GGATTCTCCAATCCT-GTTTT-TTTCT
1 GGATACTCCAA-CCTGGTTTTATTTCT
827734 CCAAAATATT
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
127 5 0.04
128 5 0.04
129 83 0.63
130 38 0.29
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (128 bp):
GGATACTCCAACCTGGTTTTATTTCTAAAACACCAATTTTACACAATCGAGGATACTCCAACCCT
GTTATTTTCGAAGGATACTCTAACCCCGACTTTATTTCCAAAACATCAACTTTTCATAATCGA
Found at i:827726 original size:78 final size:79
Alignment explanation
Indices: 827581--827732 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 79
827571 CATAATCGAG
* * * * *
827581 GATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCGAGGATACTCCAACCCT
1 GATACTCCAACCCCGATTTTATTTCCAAAACATCAACTTTTCACCATCGAGGATACTCCAACCCT
827646 GTTATTTTCGAGGA
66 GTTATTTTCGAGGA
* * * * *
827660 GATACTCTAACCCCGATTTTGTTTCCAAAATATCAACTTTTCACC-TCGAGGATTCTCCAATCCT
1 GATACTCCAACCCCGATTTTATTTCCAAAACATCAACTTTTCACCATCGAGGATACTCCAACCCT
*
827724 GTTTTTTTC
66 GTTATTTTC
827733 TCCAAAATAT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
78 25 0.40
79 37 0.60
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (79 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACATCAACTTTTCACCATCGAGGATACTCCAACCCT
GTTATTTTCGAGGA
Found at i:831315 original size:13 final size:13
Alignment explanation
Indices: 831297--831335 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
831287 ATAATCACCC
*
831297 TGTATCGATACAG
1 TGTATCGATACAA
831310 TGTATCGATACAA
1 TGTATCGATACAA
831323 TGTATCGATACAA
1 TGTATCGATACAA
831336 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:831346 original size:20 final size:20
Alignment explanation
Indices: 831321--831400 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 20
831311 GTATCGATAC
*
831321 AATGTATCGATACAAAGAAA
1 AATGTATCGATACATAGAAA
831341 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACATAGAA-----A
*
831366 GATGTATCGATACATAGAAA
1 AATGTATCGATACATAGAAA
*
831386 CATGTATCGATACAT
1 AATGTATCGATACAT
831401 TTTGGACATT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
20 33 0.63
25 19 0.37
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACATAGAAA
Found at i:833414 original size:15 final size:15
Alignment explanation
Indices: 833394--833424 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
833384 ATTTTGTTTG
*
833394 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
833409 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
833424 G
1 G
833425 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:835257 original size:21 final size:21
Alignment explanation
Indices: 835228--835272 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
835218 AAGTTTTCAT
*
835228 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
835248 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
835270 TTT
1 TTT
835273 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:837510 original size:13 final size:13
Alignment explanation
Indices: 837492--837517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
837482 CAATTTTTTG
837492 TGTATCGATACAT
1 TGTATCGATACAT
837505 TGTATCGATACAT
1 TGTATCGATACAT
837518 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:839334 original size:23 final size:24
Alignment explanation
Indices: 839290--839366 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 24
839280 TTTAATAAAT
*
839290 AAAAAATGATATTTAATTAAATTTA
1 AAAAAATGATATTTAATCAAA-TTA
*
839315 AAAAAATTATA-TTAA-CAAATTA
1 AAAAAATGATATTTAATCAAATTA
* * **
839337 AAAAAATAACATTTAA-GGAATTA
1 AAAAAATGATATTTAATCAAATTA
839360 AAAAAAT
1 AAAAAAT
839367 TTATCATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
22 12 0.27
23 19 0.42
24 4 0.09
25 10 0.22
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (24 bp):
AAAAAATGATATTTAATCAAATTA
Found at i:839806 original size:16 final size:16
Alignment explanation
Indices: 839774--839804 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
839764 AATTATAATA
839774 AAAACTTTTTTATTTT
1 AAAACTTTTTTATTTT
839790 AAAA-TTTTTTATTTT
1 AAAACTTTTTTATTTT
839805 TATAAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
AAAACTTTTTTATTTT
Found at i:839835 original size:46 final size:46
Alignment explanation
Indices: 839746--839835 Score: 105
Period size: 47 Copynumber: 1.9 Consensus size: 46
839736 ATTAAATATT
* *
839746 ATTTTTTATTTTATTAAAAATTATAATAAAAACTTTTTTATTTTAAA
1 ATTTTTTATTTTATTAAAAATCATAATAAAAAC-TTTTAATTTTAAA
839793 ATTTTTTATTTT-TATAAAAA-CATAATAATTAAA-TTTTAATTTT
1 ATTTTTTATTTTAT-TAAAAATCATAATAA--AAACTTTTAATTTT
839836 TTAATGTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
46 17 0.45
47 18 0.47
48 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (46 bp):
ATTTTTTATTTTATTAAAAATCATAATAAAAACTTTTAATTTTAAA
Found at i:839851 original size:123 final size:124
Alignment explanation
Indices: 839669--840002 Score: 396
Period size: 123 Copynumber: 2.7 Consensus size: 124
839659 ATTATAATCA
**
839669 AAAACTTTTTTAATT-TAAAACAAAATAATTAATATTTTAATTTATTAATGTAAAATTTTTAAAC
1 AAAA-TTTTTT-ATTATAAAAC-AAATAATTAATATTTTAATTTATTAATGTAATTTTTTTAAAC
* * *
839733 TGAATTAAATATTATTTTTTATTTTATTAAAAA-TTATAAT-A-AAAACTTTTTTA-T-TTT
63 TTAATTAAATATTATTTTTAATTTTATTAAAAACTAATAATAATAAAACTTTTTTATTATTT
*
839790 AAAATTTTTTATTTTTATAAAAACATAATAATTAA-ATTTTAATTTTTTAATGTAATTTTTTTAA
1 AAAATTTTTTA---TTAT-AAAACA-AATAATTAATATTTTAATTTATTAATGTAATTTTTTTAA
*
839854 ATTTAATTAAATATTATTTTTAATTTTATTAAAAACTAATAATAATAAAACTTTTTTATTTTTAT
61 ACTTAATTAAATATTATTTTTAATTTTATTAAAAACTAATAATAATAAAACTTTTTTA---TTAT
839919 TT
123 TT
* * * * *
839921 AAAATTTTTTATTATTAAA-AAATAATTAATATTTTAATTTGTTAATATAAATTTCTTTAAAGTT
1 AAAATTTTTTATTATAAAACAAATAATTAATATTTTAATTTATTAATGT-AATTTTTTTAAACTT
839985 AATTAAATATTATTTTTA
65 AATTAAATATTATTTTTA
840003 TTAAAAATAA
Statistics
Matches: 185, Mismatches: 12, Indels: 26
0.83 0.05 0.12
Matches are distributed among these distances:
119 1 0.01
120 6 0.03
121 4 0.02
122 2 0.01
123 60 0.32
124 20 0.11
125 10 0.05
126 29 0.16
127 34 0.18
128 4 0.02
130 1 0.01
131 14 0.08
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (124 bp):
AAAATTTTTTATTATAAAACAAATAATTAATATTTTAATTTATTAATGTAATTTTTTTAAACTTA
ATTAAATATTATTTTTAATTTTATTAAAAACTAATAATAATAAAACTTTTTTATTATTT
Found at i:840068 original size:127 final size:121
Alignment explanation
Indices: 839675--840070 Score: 333
Period size: 123 Copynumber: 3.2 Consensus size: 121
839665 ATCAAAAACT
* *
839675 TTTTTAATTTA-AAACAAAATAATTAATATTTTAATTTATTAATGTAAAATTTTTAAACTGAATT
1 TTTTTAATTTATAAA-AAAATAATTAATATTTTAATTTATTAATGTAAATTTTTTAAACTTAATT
** * * * *
839739 AAATATTATTTTTTATT-TTATTAAAAATTATAATAAAAACTTTTTT-A-TTTTAAAA
65 AAATATTA-TTTTTATTAAAAATAATAATTATAATTAAAACTTTTTTAATTTTTTAAA
* * * *
839794 TTTTTTATTTTTATAAAAACATAATAATTAA-ATTTTAATTTTTTAATGTAATTTTTTTAAATTT
1 -TTTTTA-ATTTAT-AAAA-A-AATAATTAATATTTTAATTTATTAATGTAAATTTTTTAAACTT
* * *
839858 AATTAAATATTATTTTTAATTTTATTAAAA-ACTAATAATAA-TAAAACTTTTTTATTTTTATTT
61 AATTAAATATTATTTTT-A--TTA--AAAATAATAATTATAATTAAAACTTTTTTA-ATTT-TTT
839921 AAAA
119 -AAA
* * * * *
839925 TTTTTTA-TTATTAAAAAATAATTAATATTTTAATTTGTTAATATAAATTTCTTTAAAGTTAATT
1 TTTTTAATTTATAAAAAAATAATTAATATTTTAATTTATTAATGTAAATTT-TTTAAACTTAATT
**
839989 AAATATTATTTTTATTAAAAATAATAATTAGTACATTATTA-TTTTTTAAATTTTTTAAA
65 AAATATTATTTTTATTAAAAATAATAATTA-TA-ATTAAAACTTTTTT-AATTTTTTAAA
840048 TTTAATTAATTTATACAAAAAAT
1 TTT--TTAATTTATA-AAAAAAT
840071 TGAAATGGCG
Statistics
Matches: 220, Mismatches: 29, Indels: 47
0.74 0.10 0.16
Matches are distributed among these distances:
120 6 0.03
121 4 0.02
122 10 0.05
123 57 0.26
124 17 0.08
125 24 0.11
126 42 0.19
127 43 0.20
128 5 0.02
129 2 0.01
130 7 0.03
131 3 0.01
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (121 bp):
TTTTTAATTTATAAAAAAATAATTAATATTTTAATTTATTAATGTAAATTTTTTAAACTTAATTA
AATATTATTTTTATTAAAAATAATAATTATAATTAAAACTTTTTTAATTTTTTAAA
Found at i:840776 original size:87 final size:86
Alignment explanation
Indices: 840621--840891 Score: 382
Period size: 87 Copynumber: 3.1 Consensus size: 86
840611 AATAAATGTG
* * *
840621 ATTATATCTTAAAATCAGATTTTTTTTTATGGAAAAAAAGAAAAGTTGATTGATTGTAAATGTCA
1 ATTATATCTGAGAATCA-A-TTTTTTTTAT---AAAAAA-AAAAGTTGACTGATTGTAAATGTCA
* *
840686 GACTGCAGGGATTAGACCAATGCATGA
60 GACTGCAAGGATTAGACTAATGCATGA
*
840713 ATTATATCTGAGAATCAATTCTTTTTTATAAAAAAAAAAGTTGACTGATTGTAAATGTTAGACTG
1 ATTATATCTGAGAATCAATT-TTTTTTATAAAAAAAAAAGTTGACTGATTGTAAATGTCAGACTG
*
840778 CAAGGATTAGACTAATACATGA
65 CAAGGATTAGACTAATGCATGA
*
840800 ATTATAGCTGAGAATCAAATTTTTTTTAT-AAAAAAAAAGTTGACTGATTGTAAATGTCAGACTG
1 ATTATATCTGAGAATC-AATTTTTTTTATAAAAAAAAAAGTTGACTGATTGTAAATGTCAGACTG
*
840864 TAAGGATTAGACTAATGCATGA
65 CAAGGATTAGACTAATGCATGA
840886 ATTATA
1 ATTATA
840892 AGGATTAGGC
Statistics
Matches: 166, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
86 60 0.36
87 70 0.42
88 10 0.06
90 2 0.01
91 9 0.05
92 15 0.09
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (86 bp):
ATTATATCTGAGAATCAATTTTTTTTATAAAAAAAAAAGTTGACTGATTGTAAATGTCAGACTGC
AAGGATTAGACTAATGCATGA
Found at i:840893 original size:26 final size:26
Alignment explanation
Indices: 840864--840917 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
840854 TGTCAGACTG
840864 TAAGGATTAGACTAATGCATGAATTA
1 TAAGGATTAGACTAATGCATGAATTA
*
840890 TAAGGATTAGGCTAATGCATGAATTA
1 TAAGGATTAGACTAATGCATGAATTA
840916 TA
1 TA
840918 TCTGAGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (26 bp):
TAAGGATTAGACTAATGCATGAATTA
Found at i:841103 original size:71 final size:70
Alignment explanation
Indices: 840992--841196 Score: 299
Period size: 71 Copynumber: 2.9 Consensus size: 70
840982 GTAAGGATTA
* *
840992 GATTAGACTAATGCATGAATTATATATGAGAATCAGATTCTTTTTTATAGAAAAAAAAGAAAGAC
1 GATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAG-AAAAAAAGAAAGAC
*
841057 TGCAAG
65 TACAAG
* * *
841063 GATTAGATTAATACATGAATTATATCTGAGAATCAAATTCTTTTTTATGGGAAAAAAA-AAAGAC
1 GATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTAT-AGAAAAAAAGAAAGAC
841127 TACAAG
65 TACAAG
* *
841133 GATTAGACTAATGCATGAATTATATCTGAGAATCGAA-T-TTTCTTATAGAAAAAAAGAAAGACT
1 GATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAGAAAAAAAGAAAGACT
841196 A
66 A
841197 ATTGATTTTA
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
67 8 0.07
68 15 0.12
69 1 0.01
70 45 0.37
71 51 0.42
72 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (70 bp):
GATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAGAAAAAAAGAAAGACT
ACAAG
Found at i:841321 original size:93 final size:89
Alignment explanation
Indices: 841134--841384 Score: 333
Period size: 93 Copynumber: 2.7 Consensus size: 89
841124 GACTACAAGG
*
841134 ATTAGACTAATGCATGAATTATATCTGAGAATCGAATTTTCTTATAG-AAAAAAAGAAAGACTAA
1 ATTAGACTAATGCAT-AATTATATCTGAGAATC-AATTTTTTTATAGAAAAAAAAGAAAGACTAA
* *
841198 TTGATTTTAAATGTCAAACTGTAAGG
64 TTGATTGTAAATGTCAAACTGTAAGA
841224 ATTAGACTAATGCATAAATTATATCTGAGAATCATATGCTTTTTTATAGAAAAAAAAGAAAGACT
1 ATTAGACTAATGCAT-AATTATATCTGAGAATCA-AT--TTTTTTATAGAAAAAAAAGAAAGACT
* *
841289 GATTGATTGTAAATGTCAGACTGTAAGA
62 AATTGATTGTAAATGTCAAACTGTAAGA
*
841317 ATTAGATTAAACTAATGCATAATTATATTTGAGAATCAGATTTTTTTATAGAAAAAAAAGAAAGA
1 ATTAG-----ACTAATGCATAATTATATCTGAGAATCA-ATTTTTTTATAGAAAAAAAAGAAAGA
841382 CTA
60 CTA
841385 CAAGGATTAG
Statistics
Matches: 143, Mismatches: 9, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
89 1 0.01
90 34 0.24
92 9 0.06
93 44 0.31
95 26 0.18
97 19 0.13
98 10 0.07
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.33
Consensus pattern (89 bp):
ATTAGACTAATGCATAATTATATCTGAGAATCAATTTTTTTATAGAAAAAAAAGAAAGACTAATT
GATTGTAAATGTCAAACTGTAAGA
Found at i:841464 original size:70 final size:69
Alignment explanation
Indices: 841321--841518 Score: 276
Period size: 70 Copynumber: 2.9 Consensus size: 69
841311 GTAAGAATTA
* *
841321 GATTAAACTAATGCAT-AATTATATTTGAGAATCAGATTTTTTTATAGAAAAAAAAGAAAGACTA
1 GATTAGACTAATGCATGAATTATATCTGAGAATCAGATTTTTTTATAGAAAAAAAAGAAAGACTA
841385 CAAG
66 CAAG
* *
841389 GATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAG-GAAAAAAGAAAGAT
1 GATTAGACTAATGCATGAATTATATCTGAGAATCAGA-T-TTTTTTATAGAAAAAAAAGAAAGAC
**
841453 TGTAAG
64 TACAAG
* *
841459 GATTAGACTAATGTATGAATTATATCTGAGAAAT-AGATTTTTTAATAGAAAAAAAAGAAA
1 GATTAGACTAATGCATGAATTATATCTGAG-AATCAGATTTTTTTATAGAAAAAAAAGAAA
841519 AACTGATTGA
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
68 24 0.21
69 30 0.26
70 49 0.42
71 13 0.11
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (69 bp):
GATTAGACTAATGCATGAATTATATCTGAGAATCAGATTTTTTTATAGAAAAAAAAGAAAGACTA
CAAG
Found at i:841486 original size:326 final size:330
Alignment explanation
Indices: 840890--841615 Score: 1151
Period size: 326 Copynumber: 2.2 Consensus size: 330
840880 GCATGAATTA
* **
840890 TAAGGATTAGGCTAATGCATGAATTATATCTGAGAATTGGATTCTTTTTTATAGAAAAAAAAGAA
1 TAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAAAAAAGAA
* *
840955 AGACTGATTGATTGTAAATGTCAGACTGTAAGGATTAGATTAGACTAATGCATGAATTATATATG
66 AGACTGATTGATTGTAAATGTCAGACTGTAAGAATTAGATTAAACTAATGCATGAATTATATATG
* *
841020 AGAATCAGATTCTTTTTTATAGAAAAAAAAGAAAGACTGCAAGGATTAGATTAATACATGAATTA
131 AGAATCAGATTCTTTTTTATAGAAAAAAAAGAAAGACTACAAGGATTAGACTAATACATGAATTA
*
841085 TATCTGAGAATCAAATTCTTTTTTATGGGAAAAAAAAAAGACTACAAGGATTAGACTAATGCATG
196 TATCTGAGAATCAAATTCTTTTTTATAGGAAAAAAAAAAGACTACAAGGATTAGACTAATGCATG
* * *
841150 AATTATATCTGAG-AATCGAATTTTCTT-ATAG-AAAAAAAGAAAGACTAATTGATTTTAAATGT
261 AATTATATCTGAGAAATAG-ATTTT-TTAATAGAAAAAAAAGAAAAACTAATTGATTGTAAATGT
841212 CAAACTG
324 CAAACTG
* * *
841219 TAAGGATTAGACTAATGCATAAATTATATCTGAGAATCATATGCTTTTTTATAGAAAAAAAAGAA
1 TAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAAAAAAGAA
*
841284 AGACTGATTGATTGTAAATGTCAGACTGTAAGAATTAGATTAAACTAATGCAT-AATTATATTTG
66 AGACTGATTGATTGTAAATGTCAGACTGTAAGAATTAGATTAAACTAATGCATGAATTATATATG
*
841348 AGAATCAGA-T-TTTTTTATAGAAAAAAAAGAAAGACTACAAGGATTAGACTAATGCATGAATTA
131 AGAATCAGATTCTTTTTTATAGAAAAAAAAGAAAGACTACAAGGATTAGACTAATACATGAATTA
* * * ** *
841411 TATCTGAGAATCAGATTCTTTTTTATAGGAAAAAAGAAAGATTGTAAGGATTAGACTAATGTATG
196 TATCTGAGAATCAAATTCTTTTTTATAGGAAAAAAAAAAGACTACAAGGATTAGACTAATGCATG
*
841476 AATTATATCTGAGAAATAGATTTTTTAATAGAAAAAAAAGAAAAACTGATTGATTGTAAATGTCA
261 AATTATATCTGAGAAATAGATTTTTTAATAGAAAAAAAAGAAAAACTAATTGATTGTAAATGTCA
*
841541 GACTG
326 AACTG
* *
841546 CAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAG-GAAAAAAGAA
1 TAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAAAAAAGAA
841610 AGACTG
66 AGACTG
841616 CAAAGATTAG
Statistics
Matches: 365, Mismatches: 29, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
325 2 0.01
326 145 0.40
327 89 0.24
328 19 0.05
329 110 0.30
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (330 bp):
TAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAAAAAAGAA
AGACTGATTGATTGTAAATGTCAGACTGTAAGAATTAGATTAAACTAATGCATGAATTATATATG
AGAATCAGATTCTTTTTTATAGAAAAAAAAGAAAGACTACAAGGATTAGACTAATACATGAATTA
TATCTGAGAATCAAATTCTTTTTTATAGGAAAAAAAAAAGACTACAAGGATTAGACTAATGCATG
AATTATATCTGAGAAATAGATTTTTTAATAGAAAAAAAAGAAAAACTAATTGATTGTAAATGTCA
AACTG
Found at i:841574 original size:161 final size:161
Alignment explanation
Indices: 841053--841685 Score: 575
Period size: 161 Copynumber: 3.9 Consensus size: 161
841043 AAAAAAAGAA
* * * *
841053 AGACTGCAAGGATTAGATTAATACATGAATTATATCTGAGAATCAAATTCTTTTTTATGGGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
* * *
841118 AAAAAAGACTACAAGGATTAGACTAATGCATGAATTATATCTGAG-AATCGAATTTTCTT-ATAG
66 AAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAAATAGAATTTT-TTAATAG
* *
841181 AAAAAAAGAAAGACTAATTGATTTTAAATGTC
130 AAAAAAAGAAAAACTAATTGATTATAAATGTC
* * * * * *
841213 AAACTGTAAGGATTAGACTAATGCATAAATTATATCTGAGAATCATATGCTTTTTTATAGAAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAG-GAAA
** * * * * * * * *
841278 AAAGAAAGACTG-ATTGATTGTAAATGTCAGACTGTAAGAATTAGAT-T-A-AACTAATGCATAA
65 AAAGAAAGACTGCAAGGA-T-TAGA-CT-A-A-TGCATGAATTATATCTGAGAAAT-A-GAAT-T
* * * * ** ***** * * * * * **
841339 TTATATTTGAGAATCAGATTTTTTTATAGA-AAAAAAAGAA
121 TTTTAATAGAAAAAAAGAAAAACTAATTGATTATAAATGTC
*
841379 AGACTACAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
* * *
841444 AAGAAAGATTGTAAGGATTAGACTAATGTATGAATTATATCTGAGAAATAG-ATTTTTTAATAGA
66 AAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAAATAGAATTTTTTAATAG-
* *
841508 AAAAAAAGAAAAACTGATTGATTGTAAATGTC
130 AAAAAAAGAAAAACTAATTGATTATAAATGTC
841540 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
* * *
841605 AAGAAAGACTGCAAAGATTAGACTAATGCATGAATTATATCTTG-G-AATCAGATTCTTTTTTAT
66 AAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATC-TGAGAAAT-AGAAT-TTTTTAAT
* *
841668 AGGAAAAAAGAAAGACTA
128 AGAAAAAAAGAAAAACTA
841686 CAAGGATTAT
Statistics
Matches: 365, Mismatches: 86, Indels: 42
0.74 0.17 0.09
Matches are distributed among these distances:
159 6 0.02
160 83 0.23
161 125 0.34
162 22 0.06
163 14 0.04
164 7 0.02
165 17 0.05
166 76 0.21
167 15 0.04
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.31
Consensus pattern (161 bp):
AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
AAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAAATAGAATTTTTTAATAGA
AAAAAAGAAAAACTAATTGATTATAAATGTC
Found at i:841653 original size:70 final size:70
Alignment explanation
Indices: 841540--841753 Score: 344
Period size: 70 Copynumber: 3.1 Consensus size: 70
841530 TGTAAATGTC
841540 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
841605 AAGAA
66 AAGAA
*
841610 AGACTGCAAAGATTAGACTAATGCATGAATTATATCTTG-GAATCAGATTCTTTTTTATAGGAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATC-TGAGAATCAGATTCTTTTTTATAGGAAA
841674 AAAGAA
65 AAAGAA
* * * * *
841680 AGACTACAAGGATTATACTAATGAATGAATTATATCTGAGAATCGGA-T-TTTTTTATAGAAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
841743 AAGAA
66 AAGAA
841748 AGACTG
1 AGACTG
841754 ATTGATTGTA
Statistics
Matches: 134, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
68 24 0.18
69 3 0.02
70 105 0.78
71 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.18, T:0.30
Consensus pattern (70 bp):
AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAA
AAGAA
Found at i:841789 original size:230 final size:232
Alignment explanation
Indices: 841215--841985 Score: 1103
Period size: 230 Copynumber: 3.3 Consensus size: 232
841205 TAAATGTCAA
* * * *
841215 ACTGTAAGGATTAGACTAATGCATAAATTATATCTGAGAATCATATGCTTTTTTATAGAAAAAAA
1 ACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGAT-ATTTTTTATAGAAAAAAA
* *
841280 AGAAAGACTGATTGATTGTAAATGTCAGACTGTAAGAATTAGATTAAACTAATGCAT-AATTATA
65 AGAAAGACTGATTGATTGTAAATGTCAGACTGCAAG-----GATTAGACTAATGCATGAATTATA
* *
841344 TTTGAGAATCAGA-T-TTTTTTATAGAAAAAAAAGAAAGACTACAAGGATTAGACTAATGCATGA
125 TCTGAGAATCAGATTCTTTTTTATAG-AAAAAAAGAAAGACTGCAAGGATTAGACTAATGCATGA
841407 ATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAAAAGAAAG
189 ATTATATCTGAGAATCAGATTCTTTTTTATAGGAAAAAAGAAAG
* * * *
841451 ATTGTAAGGATTAGACTAATGTATGAATTATATCTGAGAAAT-AGAT-TTTTTAATAGAAAAAAA
1 ACTGCAAGGATTAGACTAATGCATGAATTATATCTGAG-AATCAGATATTTTTTATAGAAAAAAA
*
841514 AGAAAAACTGATTGATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGA
65 AGAAAGACTGATTGATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGA
* *
841579 GAATCAGATTCTTTTTTATAGGAAAAAAGAAAGACTGCAAAGATTAGACTAATGCATGAATTATA
130 GAATCAGATTCTTTTTTATAGAAAAAAAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATA
841644 TCTTG-GAATCAGATTCTTTTTTATAGGAAAAAAGAAAG
195 TC-TGAGAATCAGATTCTTTTTTATAGGAAAAAAGAAAG
* * * *
841682 ACTACAAGGATTATACTAATGAATGAATTATATCTGAGAATCGGAT-TTTTTTATAG-AAAAAAA
1 ACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATATTTTTTATAGAAAAAAAA
* *
841745 GAAAGACTGATTGATTGTAAATGTCAAATTGCAAGGATTAGACTAATGCATGAATTATATCTGAG
66 GAAAGACTGATTGATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAG
* * *
841810 AATC-GAATTCTTTTTTATAGAAAAAAAGAAAAACCGCAAGGATTAGATTAATGCATGAATTATA
131 AATCAG-ATTCTTTTTTATAGAAAAAAAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATA
* * * * *
841874 TCTGAAAATCAAATTCTTTTCTAAAGAAAAAAAGAAAG
195 TCTGAGAATCAGATTCTTTTTTATAGGAAAAAAGAAAG
*
841912 ACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTATTTTTTATA-AGAAAAA
1 ACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGA-TATTTTTTATAGAAAAAAA
841976 AGAAAGACTG
65 AGAAAGACTG
841986 CAAGGATTAG
Statistics
Matches: 487, Mismatches: 37, Indels: 26
0.89 0.07 0.05
Matches are distributed among these distances:
229 18 0.04
230 219 0.45
231 123 0.25
232 36 0.07
234 50 0.10
236 38 0.08
237 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (232 bp):
ACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATATTTTTTATAGAAAAAAAA
GAAAGACTGATTGATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAG
AATCAGATTCTTTTTTATAGAAAAAAAGAAAGACTGCAAGGATTAGACTAATGCATGAATTATAT
CTGAGAATCAGATTCTTTTTTATAGGAAAAAAGAAAG
Found at i:841793 original size:160 final size:162
Alignment explanation
Indices: 841614--841915 Score: 450
Period size: 160 Copynumber: 1.9 Consensus size: 162
841604 AAAGAAAGAC
*
841614 TGCAAAGATTAGACTAATGCATGAATTATATCTTG-GAATC-AGATTCTTTTTTATAGGAAAAAA
1 TGCAAAGATTAGACTAATGCATGAATTATATC-TGAGAATCGA-ATTCTTTTTTATAGAAAAAAA
* * * * ** *
841677 GAAAGACTACAAGGATTATACTAATGAATGAATTATATCTGAGAATCGGATT-TTTT-TATAGAA
64 GAAAAACCACAAGGATTAGACTAATGAATGAATTATATCTGAAAATCAAATTCTTTTCTAAAGAA
841740 AAAAAGAAAGACTGATTGATTGTAAATGTCAAAT
129 AAAAAGAAAGACTGATTGATTGTAAATGTCAAAT
*
841774 TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGAATTCTTTTTTATAGAAAAAAAGA
1 TGCAAAGATTAGACTAATGCATGAATTATATCTGAGAATCGAATTCTTTTTTATAGAAAAAAAGA
* * *
841839 AAAACCGCAAGGATTAGATTAATGCATGAATTATATCTGAAAATCAAATTCTTTTCTAAAGAAAA
66 AAAACCACAAGGATTAGACTAATGAATGAATTATATCTGAAAATCAAATTCTTTTCTAAAGAAAA
841904 AAAGAAAGACTG
131 AAAGAAAGACTG
841916 CAAGGATTAG
Statistics
Matches: 126, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
159 2 0.02
160 99 0.79
161 5 0.04
162 20 0.16
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (162 bp):
TGCAAAGATTAGACTAATGCATGAATTATATCTGAGAATCGAATTCTTTTTTATAGAAAAAAAGA
AAAACCACAAGGATTAGACTAATGAATGAATTATATCTGAAAATCAAATTCTTTTCTAAAGAAAA
AAAGAAAGACTGATTGATTGTAAATGTCAAAT
Found at i:841889 original size:70 final size:70
Alignment explanation
Indices: 841774--842034 Score: 373
Period size: 70 Copynumber: 3.7 Consensus size: 70
841764 AATGTCAAAT
*
841774 TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGAATTCTTTTTTATAGAAAAAAAGA
1 TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAGAAAAAAAGA
*
841839 AAAAC
66 AAGAC
* * * * *
841844 CGCAAGGATTAGATTAATGCATGAATTATATCTGAAAATCAAATTCTTTTCTAAAGAAAAAAAGA
1 TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAGAAAAAAAGA
841909 AAGAC
66 AAGAC
* *
841914 TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTATTTTTTATA-AGAAAAAAG
1 TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAGA-AAAAAAG
841978 AAAGAC
65 AAAGAC
* * *
841984 TGCAAGGATTAGGCTAATGCATGAATTGTA-CATGAGAATCAGATTTCTTTT
1 TGCAAGGATTAGACTAATGCATGAATTATATC-TGAGAATCA-AATTCTTTT
842035 GGTAAAAAAA
Statistics
Matches: 169, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
69 2 0.01
70 161 0.95
71 6 0.04
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (70 bp):
TGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAAATTCTTTTTTATAGAAAAAAAGA
AAGAC
Found at i:846116 original size:28 final size:31
Alignment explanation
Indices: 846058--846117 Score: 72
Period size: 32 Copynumber: 2.0 Consensus size: 31
846048 TGAAAAAAGT
* *
846058 TTAAAAAATAATGTATTAATTATTATTTTTAA
1 TTAAAAAATAATATATTAATTA-TATCTTTAA
846090 TTAAAAAATAATAT-TTAATTA-A-CTTTAA
1 TTAAAAAATAATATATTAATTATATCTTTAA
846118 AGAAATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 5 0.19
29 1 0.04
31 7 0.27
32 13 0.50
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (31 bp):
TTAAAAAATAATATATTAATTATATCTTTAA
Found at i:846360 original size:124 final size:124
Alignment explanation
Indices: 846091--846456 Score: 413
Period size: 124 Copynumber: 2.9 Consensus size: 124
846081 TATTTTTAAT
* * *
846091 TAAAAAATAATATTTAATTAACTTTAAAGAAATTTATATTAACATATTAAAATATTAATTATT-T
1 TAAAAAATAATATTTAATTAAATTTAAA-AAATTTACATTAACAAATTAAAAT-TTAATTATTAT
* * ** * *
846155 -TTTAATAACAAAAACTTTTAAATAAAAATT-AAA-AAAAAGGTTTATTATTATTATTTTTTAAT
64 GTTT--TTATAAAAA----TAAA-AAATTTTAAAATAAAAAGGTTTTTTATTA-TAATTTTTAAT
846217 AAAA
121 AAAA
* * *
846221 TTAAAAATAAAATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATTTAATTATTATGT
1 TAAAAAATAATATTTAATTAAATTTAAAAAATTTACATTAACAAATTAAAATTTAATTATTATGT
846286 TTTTATAAAAATAAAAAATTTTAAAATAAAAAGGTTTTTTATTATAATTTTTAATAAAA
66 TTTTATAAAAATAAAAAATTTTAAAATAAAAAGGTTTTTTATTATAATTTTTAATAAAA
* * * *
846345 TAAAAAATAATATTTAATTTAGTTT-AAAAATTTACATTAAGAAATTAAAACATTAATTATTATG
1 TAAAAAATAATATTTAATTAAATTTAAAAAATTTACATTAACAAATTAAAA-TTTAATTATTATG
* *
846409 -TTTT-TAAAAATAAAAAATTTTAAATTAAAAAAAGTTTTTTATTATAAT
65 TTTTTATAAAAATAAAAAATTTTAAAAT-AAAAAGGTTTTTTATTATAAT
846457 AATATTTTTT
Statistics
Matches: 209, Mismatches: 21, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
122 21 0.10
123 52 0.25
124 54 0.26
125 16 0.08
128 16 0.08
129 22 0.11
130 28 0.13
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (124 bp):
TAAAAAATAATATTTAATTAAATTTAAAAAATTTACATTAACAAATTAAAATTTAATTATTATGT
TTTTATAAAAATAAAAAATTTTAAAATAAAAAGGTTTTTTATTATAATTTTTAATAAAA
Found at i:846452 original size:123 final size:125
Alignment explanation
Indices: 846091--846456 Score: 395
Period size: 123 Copynumber: 2.9 Consensus size: 125
846081 TATTTTTAAT
* * * * *
846091 TAAAAAATAATATTTAATTAACTTTAAAGAAATTTATATTAACATATTAAAATATTAATTATT-T
1 TAAAAAATAAAATTTAATTAAATTTAAA-AAAATTACATTAACAAATTAAAA-ATTAATTATTAT
* * *** ** * *
846155 -TTTAATAACAAAAACTTTTAAA-TAAAAATTAAAAAAAAGGTTTATTATTATTATTTTTTAATA
64 GTTT--TTATAAAAA-TAAAAAATTTTAAATT-AAAAAAA-GTTTTTTATTA-TAATTTTTAATA
846218 AAA
123 AAA
* *
846221 TTAAAAATAAAATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATTTAATTATTATGT
1 TAAAAAATAAAATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAAATTAATTATTATGT
* *
846286 TTTTATAAAAATAAAAAATTTTAAAAT-AAAAAGGTTTTTTATTATAATTTTTAATAAAA
66 TTTTATAAAAATAAAAAATTTTAAATTAAAAAAAGTTTTTTATTATAATTTTTAATAAAA
* * * * *
846345 TAAAAAATAATATTTAATTTAGTTT-AAAAATTTACATTAAGAAATTAAAACATTAATTATTATG
1 TAAAAAATAAAATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAA-ATTAATTATTATG
846409 -TTTT-TAAAAATAAAAAATTTTAAATTAAAAAAAGTTTTTTATTATAAT
65 TTTTTATAAAAATAAAAAATTTTAAATTAAAAAAAGTTTTTTATTATAAT
846457 AATATTTTTT
Statistics
Matches: 204, Mismatches: 27, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
122 21 0.10
123 47 0.23
124 47 0.23
125 10 0.05
126 5 0.02
127 4 0.02
128 21 0.10
129 21 0.10
130 28 0.14
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (125 bp):
TAAAAAATAAAATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAAATTAATTATTATGT
TTTTATAAAAATAAAAAATTTTAAATTAAAAAAAGTTTTTTATTATAATTTTTAATAAAA
Found at i:846811 original size:25 final size:25
Alignment explanation
Indices: 846764--846811 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
846754 TTTAATTCTT
* *
846764 TAAATGTTTTTTTAATTTGTTAATA
1 TAAATGTTTTTTAAATTTATTAATA
846789 TAAAT-TTTTTTAAATTTAATTAA
1 TAAATGTTTTTTAAATTT-ATTAA
846812 ATATCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
TAAATGTTTTTTAAATTTATTAATA
Found at i:847000 original size:110 final size:111
Alignment explanation
Indices: 846775--846976 Score: 298
Period size: 110 Copynumber: 1.8 Consensus size: 111
846765 AAATGTTTTT
* *
846775 TTAATTTGTTAATATAAATTTTTTTAAATTTAATTAAATATCATTTTTTATTTTATTAAAAAATA
1 TTAATTTGTTAATATAAATTTTTTAAAATTTAATTAAATATCATTTTTAATTTTATTAAAAAATA
* * * * *
846840 ATAATAAAAATACTTTTTATTTTTATAAAAATATATAATTAATATT
66 ATAATAAAAACACTTTTTAATTTAATAAAAATATATAATAAATATA
* *
846886 TTAATTTGTTAATGT-AATTTTTTAAAATTTAATTAAATATTATTTTTAATTTTATTAAAAAATA
1 TTAATTTGTTAATATAAATTTTTTAAAATTTAATTAAATATCATTTTTAATTTTATTAAAAAATA
*
846950 ATAATAATAAACCCTTTTTAATTTAAT
66 ATAATAA-AAACACTTTTTAATTTAAT
846977 TTTTTATTTT
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
110 53 0.65
111 29 0.35
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (111 bp):
TTAATTTGTTAATATAAATTTTTTAAAATTTAATTAAATATCATTTTTAATTTTATTAAAAAATA
ATAATAAAAACACTTTTTAATTTAATAAAAATATATAATAAATATA
Found at i:847035 original size:21 final size:22
Alignment explanation
Indices: 847011--847051 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
847001 ATTTTAATTT
847011 ATTAATGT-AAAATT-TTTTTAA
1 ATTAAT-TAAAAATTATTTTTAA
847032 ATTAATTAAAAATTATTTTT
1 ATTAATTAAAAATTATTTTT
847052 TTATTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTAATTAAAAATTATTTTTAA
Found at i:853443 original size:2 final size:2
Alignment explanation
Indices: 853436--853466 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
853426 AAATGTTGCT
853436 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
853467 GATTTTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:854740 original size:3 final size:3
Alignment explanation
Indices: 854732--854759 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
854722 GAAATGTGGA
854732 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
854760 AGAAATGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:855274 original size:2 final size:2
Alignment explanation
Indices: 855267--855298 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
855257 ATTGGATGGA
855267 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
855299 GTATGCCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:855341 original size:14 final size:14
Alignment explanation
Indices: 855322--855354 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
855312 AATTTTTTTA
855322 AAAAAAAATTAA-AG
1 AAAAAAAA-TAATAG
855336 AAAAAAAATAATAG
1 AAAAAAAATAATAG
855350 AAAAA
1 AAAAA
855355 TAGATCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (14 bp):
AAAAAAAATAATAG
Found at i:858077 original size:19 final size:19
Alignment explanation
Indices: 858034--858074 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
858024 TCTATAGCAC
858034 TATTAACTAAATAAAAATA
1 TATTAACTAAATAAAAATA
858053 TATTAACTAAATAAAAAT-
1 TATTAACTAAATAAAAATA
858071 TATT
1 TATT
858075 TAAATTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TATTAACTAAATAAAAATA
Found at i:859059 original size:20 final size:20
Alignment explanation
Indices: 859025--859069 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
859015 TTTTAAACAA
*
859025 AAATTCCATCGGAAAAAGTT
1 AAATTCCATCAGAAAAAGTT
* *
859045 AAATTCCATTAGAAATAGTT
1 AAATTCCATCAGAAAAAGTT
*
859065 CAATT
1 AAATT
859070 TTTTCGATGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.31
Consensus pattern (20 bp):
AAATTCCATCAGAAAAAGTT
Found at i:859778 original size:20 final size:20
Alignment explanation
Indices: 859755--859800 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
859745 TTTTTGTACT
859755 GATACACTAAGAAATGTATC
1 GATACACTAAGAAATGTATC
859775 GATACACTAAGAAATGTATC
1 GATACACTAAGAAATGTATC
859795 GATACA
1 GATACA
859801 TAATCTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
GATACACTAAGAAATGTATC
Found at i:861988 original size:165 final size:164
Alignment explanation
Indices: 861618--861969 Score: 431
Period size: 165 Copynumber: 2.1 Consensus size: 164
861608 TTAAATTAAT
* *
861618 TTTTAAAAAATTTATTTATTTTCATGAGTTTTTCATTTTTTCTTTAAAATTTTTTATTTTTGAAA
1 TTTT-AAAAATTTATTTATTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTTTCATTTTTGAAA
* * ** * *
861683 AACAGAGTTTTCTACTCCATTATTATTTTCGAGGGAGATTTTTCTCGGTTTAAAATTTTAATATT
65 AACAGAGTTTTCTACTCCATTAATATTTTCGAAGGAGATTTTTCTCAATATAAAATTTTAAAATT
* * *
861748 CATCAAATATCATCACTTAAGTCATAGTAAATTAG
130 CATCAAATATCATCAATTAAGTCACAGTAAATCAG
861783 TTTTGAAAAATTTATTTATTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTTTCATTTTTTGAA
1 TTTT-AAAAATTTATTTATTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTTTCA-TTTTTGAA
* * * * *
861848 AAACCGAGTTTTCTATTCCATTAATGTTTTTGAAGG-GA-TTTTCTCAATATAAATTTTTAAAAT
64 AAACAGAGTTTTCTACTCCATTAATATTTTCGAAGGAGATTTTTCTCAATATAAAATTTTAAAAT
* ** * *
861911 TCATCTAATATTGT-AATTAAATTCACATTAAATCAG
129 TCATCAAATATCATCAATT-AAGTCACAGTAAATCAG
*
861947 TTTTATAAAATTCAATTTATTTT
1 TTTTA-AAAATT-TATTTATTTT
861970 AGGAGTTGTT
Statistics
Matches: 160, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
163 4 0.03
164 54 0.34
165 64 0.40
166 38 0.24
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (164 bp):
TTTTAAAAATTTATTTATTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTTTCATTTTTGAAAA
ACAGAGTTTTCTACTCCATTAATATTTTCGAAGGAGATTTTTCTCAATATAAAATTTTAAAATTC
ATCAAATATCATCAATTAAGTCACAGTAAATCAG
Found at i:863057 original size:32 final size:32
Alignment explanation
Indices: 863010--863079 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
863000 AAATAGTAAC
*
863010 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCAATACATAAGTGTTGTATCGATACAA
* *
863042 TGTATCAATATATAAGTGTTGTATTGATACAA
1 TGTATCAATACATAAGTGTTGTATCGATACAA
863074 TGTATC
1 TGTATC
863080 GCTACGAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (32 bp):
TGTATCAATACATAAGTGTTGTATCGATACAA
Found at i:863139 original size:13 final size:13
Alignment explanation
Indices: 863121--863148 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
863111 ATACATTACT
863121 CAATGTATCGATA
1 CAATGTATCGATA
863134 CAATGTATCGATA
1 CAATGTATCGATA
863147 CA
1 CA
863149 TCTGGGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:866865 original size:21 final size:21
Alignment explanation
Indices: 866839--866892 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
866829 TTCAACAATT
*
866839 TGTATCGATACAATTAG-GCAA
1 TGTATCGATACAATAAGTG-AA
*
866860 TGTATCAATAC-ATAAGTGAA
1 TGTATCGATACAATAAGTGAA
866880 TGTATCGATACAA
1 TGTATCGATACAA
866893 CCTAAAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:867001 original size:20 final size:20
Alignment explanation
Indices: 866978--867033 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
866968 TACATAAGAA
866978 ATTGTATCGATACATTTCTT-
1 ATTGTATCGATACATTT-TTC
*
866998 ATTGTATCGATATATTTTTC
1 ATTGTATCGATACATTTTTC
*
867018 AATGTATCGATACATT
1 ATTGTATCGATACATT
867034 CAATTAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (20 bp):
ATTGTATCGATACATTTTTC
Found at i:867681 original size:20 final size:20
Alignment explanation
Indices: 867656--867762 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
867646 TTTTCACAAT
867656 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
867676 TTGTATCGATACATTCTAGGTTTTACCCA
1 TTGTATCGATACA-T-T--G--TT---CA
* **
867705 GATGTATCGATACATCATTCA
1 -TTGTATCGATACATTGTTCA
867726 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
867746 TTGTATCGATATATTGT
1 TTGTATCGATACATTGT
867763 ATCGATACAT
Statistics
Matches: 70, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
20 46 0.66
21 3 0.04
22 1 0.01
24 3 0.04
26 2 0.03
29 3 0.04
30 12 0.17
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:870188 original size:50 final size:51
Alignment explanation
Indices: 870119--870244 Score: 148
Period size: 50 Copynumber: 2.5 Consensus size: 51
870109 ATTTTCGAGA
* * *
870119 GGATACTCTAACCCCGATTTTATTTCTAAAATAC--ATATTTTCACAATCGG
1 GGATACTCTAACCCCGATTTTATTTCCAAAACACTAAT-TTTTCACAATCAG
* * *
870169 GGATACTTTAACTCTGATTTTATTTCCAAAACACTAATTTTTCACAATCAG
1 GGATACTCTAACCCCGATTTTATTTCCAAAACACTAATTTTTCACAATCAG
*
870220 GGATACTCCAACCCCGTTATTTTAT
1 GGATACTCTAACCCCG--ATTTTAT
870245 CAAGGATGCT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
50 29 0.47
51 24 0.39
52 2 0.03
53 7 0.11
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (51 bp):
GGATACTCTAACCCCGATTTTATTTCCAAAACACTAATTTTTCACAATCAG
Found at i:870256 original size:28 final size:28
Alignment explanation
Indices: 870215--870291 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
870205 ATTTTTCACA
*
870215 ATCAGGGATACTCCAACCCCGTTATTTT
1 ATCAAGGATACTCCAACCCCGTTATTTT
* * *
870243 ATCAAGGATGCTCCAATCTCGTTATTTCT
1 ATCAAGGATACTCCAACCCCGTTATTT-T
*
870272 A--AGGGGATACTCCAACCCCG
1 ATCA-AGGATACTCCAACCCCG
870292 GCTTTATTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
27 1 0.03
28 36 0.92
29 2 0.05
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (28 bp):
ATCAAGGATACTCCAACCCCGTTATTTT
Found at i:870457 original size:78 final size:78
Alignment explanation
Indices: 870243--870493 Score: 242
Period size: 79 Copynumber: 3.2 Consensus size: 78
870233 CCGTTATTTT
* * * *
870243 ATCAAGGATGCTCCAA-TCTCGTTATTTCTAAGGGGATACTCCAACCCCGGCTTTATTTCTAAAA
1 ATCAGGGATACTCCAACTCT-GTTATTTC-GAGGGGATACTCCAACCCCGACTTTATTTCTAAAA
* *
870307 TATTGA-TTTCTCACA
64 CATTGATTTTCT-ATA
* * * * *
870322 ATCGGGGATACTCTAAC-CTTGTTATTTTTGCGGGGATACTCCAACCCC-AGCCTTATTT-TCAA
1 ATCAGGGATACTCCAACTC-TGTTA-TTTCGAGGGGATACTCCAACCCCGA-CTTTATTTCT-AA
**
870384 AACATCAATTTTCTATA
62 AACATTGATTTTCTATA
* **
870401 ATCAGGGATACTCCAACTCTGTTATTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAGGACA
1 ATCAGGGATACTCCAACTCTGTTATTTCGAGGGGATACTCCAACCCCGACTTTATTTCTAAAACA
*
870466 TTGATTTTCCATA
66 TTGATTTTCTATA
*
870479 ATCGGGGATACTCCA
1 ATCAGGGATACTCCA
870494 GCCCCGTTGT
Statistics
Matches: 138, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
78 56 0.41
79 72 0.52
80 10 0.07
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (78 bp):
ATCAGGGATACTCCAACTCTGTTATTTCGAGGGGATACTCCAACCCCGACTTTATTTCTAAAACA
TTGATTTTCTATA
Found at i:875254 original size:51 final size:51
Alignment explanation
Indices: 875140--875255 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
875130 TCTAAAATAG
* * * *
875140 CAGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAAT
1 CAGGGTTAGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAT
* *
875191 CAGAGTTAGAGTATCCCCGATTATGGAAAATTGATATTTTAGAAATAAAAT
1 CAGGGTTAGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAT
* *
875242 CGGGGTTCGAGTAT
1 CAGGGTTAGAGTAT
875256 GTCTTTGGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (51 bp):
CAGGGTTAGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAT
Found at i:875327 original size:130 final size:129
Alignment explanation
Indices: 875142--875597 Score: 520
Period size: 130 Copynumber: 3.5 Consensus size: 129
875132 TAAAATAGCA
* * * * *
875142 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGAGTTAGAGTATCC
1 GGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAATCGGAGTTAGAGTATCC
* * * * *
875207 CCGATTATGGAAAATTGATATTTTAGAAATAAAATCGGGGTTCGAGTATGTCTTTGGAAATAACG
66 CCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATG-CCTTGGAAATAACG
* * *
875272 GGGTTAGAGTATCCCCGGTGGTGGAAAATCGATGTTTTGGAAATGAAATCGGAGTTCGAGTATCC
1 GGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAATCGGAGTTAGAGTATCC
* * * *
875337 TCGATTGTGAAAAATTGATGTTTTAAAAATAAAATCGGGGTTGGAGTATCCCCTTGAAAATAACG
66 CCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTAT-GCCTTGGAAATAACG
* * * * * * *
875402 GGGCTAGAGTATCTCCGACGGTGGAAAATCGATG-TTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAATCGGAGTTAGAGTATCC
* *
875466 CCGATTGTGAAAAATTGATGTTTTAGAAATAAAA-CTAGGGTTGGAGTATCGCCTAGGAAATAAC
66 CCGATTGTGAAAAATTGATGTTTTAGAAATAAAATC-GGGGTTGGAGTAT-GCCTTGGAAATAAC
*
875530 A
129 G
* ** * * * * * * * *
875531 GGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAATCGGAGTTAGAGTATCC
875596 CC
66 CC
875598 TCGGAAATAA
Statistics
Matches: 280, Mismatches: 43, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
128 1 0.00
129 105 0.38
130 174 0.62
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (129 bp):
GGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAATCGGAGTTAGAGTATCC
CCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATGCCTTGGAAATAACG
Found at i:875351 original size:51 final size:50
Alignment explanation
Indices: 875254--875389 Score: 141
Period size: 51 Copynumber: 2.7 Consensus size: 50
875244 GGGTTCGAGT
* *
875254 ATGTCTTTGGAAAT-AA-CGGGGTTAGAGTATCCCCGGTGGTGGAAAATCG
1 ATGT-TTTGGAAATAAATCGGGGTTAGAGTATCCCCGATGGTGAAAAATCG
* * * * *
875303 ATGTTTTGGAAATGAAATCGGAGTTCGAGTATCCTCGATTGTGAAAAATTG
1 ATGTTTTGGAAAT-AAATCGGGGTTAGAGTATCCCCGATGGTGAAAAATCG
** *
875354 ATGTTTTAAAAATAAAATCGGGGTTGGAGTATCCCC
1 ATGTTTTGGAAAT-AAATCGGGGTTAGAGTATCCCC
875390 TTGAAAATAA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
48 9 0.13
49 4 0.06
50 2 0.03
51 56 0.79
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (50 bp):
ATGTTTTGGAAATAAATCGGGGTTAGAGTATCCCCGATGGTGAAAAATCG
Found at i:875462 original size:50 final size:51
Alignment explanation
Indices: 875408--875515 Score: 137
Period size: 50 Copynumber: 2.1 Consensus size: 51
875398 AACGGGGCTA
* * *
875408 GAGTATCTCCGACGGTGGAAAATCGATGTTTGA-AAATAAAACCGGGGTTG
1 GAGTATCCCCGACGGTGAAAAATCGATGTTTGAGAAATAAAACCAGGGTTG
** * * *
875458 GAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTAGGGTTG
1 GAGTATCCCCGACGGTGAAAAATCGATGTTTGAGAAATAAAACCAGGGTTG
875509 GAGTATC
1 GAGTATC
875516 GCCTAGGAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 27 0.55
51 22 0.45
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (51 bp):
GAGTATCCCCGACGGTGAAAAATCGATGTTTGAGAAATAAAACCAGGGTTG
Found at i:875545 original size:79 final size:79
Alignment explanation
Indices: 875452--875648 Score: 288
Period size: 79 Copynumber: 2.5 Consensus size: 79
875442 AATAAAACCG
*
875452 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTT-AGAAATAAAACTAGGGTTGGAGTATC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGA-AAATAAAACCAGGGTTGGAGTATC
*
875516 GCCTAGGAAATAACA
65 CCCTAGGAAATAACA
* * * *
875531 GGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCC
* *
875596 CCTCGGAAATAACG
66 CCTAGGAAATAACA
* *
875610 GGGTTGGAGTATCCCTGATTGTAAAAAATTGATGTTTTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTG
875649 GGATATAAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 103 0.99
80 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCC
CCTAGGAAATAACA
Found at i:878748 original size:40 final size:41
Alignment explanation
Indices: 878704--878974 Score: 130
Period size: 41 Copynumber: 6.5 Consensus size: 41
878694 CCACTTTTTA
* * *
878704 AGGACAAAGGTAAAGAG-AATGAAATAG-GTCTTGCTCCTTG
1 AGGACAAAGGAAAAAAGAAAAGAAA-AGTGTCTTGCTCCTTG
* *
878744 AGGACAAAGGAAAAAAGAAAAGGAAAGTGTCTTGCTTCTTG
1 AGGACAAAGGAAAAAAGAAAAGAAAAGTGTCTTGCTCCTTG
* * * **
878785 AGGACAAAGTG-AAAAAG---AGTACA--GTCCTG-TTTTTCG
1 AGGACAAAG-GAAAAAAGAAAAGAAAAGTGTCTTGCTCCTT-G
* ** *
878821 AGGACAAAGGAAAAAAGGAAAACGAAATGCATCTTGCTCTTTG
1 AGGACAAAGGAAAAAA-GAAAA-GAAAAGTGTCTTGCTCCTTG
* * * *
878864 AGGACAAAAGAAAAAGGAAAA-TAAAGTGCGTCTTGCTCTTTG
1 AGGACAAAGGAAAAAAGAAAAGAAAAGT--GTCTTGCTCCTTG
* * ** * * *
878906 AGAACTAGAAGGGAAAAGAAGGAAATGAAGTGCGTCATGCTCTTTG
1 AGGAC-A-AA-GGAAAA-AA-GAAAAGAAAAGTGTCTTGCTCCTTG
878952 AGGACAAAGGAAAAAAGGAAAAG
1 AGGACAAAGGAAAAAA-GAAAAG
878975 GCATCCTGCT
Statistics
Matches: 178, Mismatches: 32, Indels: 40
0.71 0.13 0.16
Matches are distributed among these distances:
35 5 0.03
36 20 0.11
37 1 0.01
38 4 0.02
40 21 0.12
41 34 0.19
42 30 0.17
43 26 0.15
44 8 0.04
45 6 0.03
46 17 0.10
47 4 0.02
48 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.27, T:0.19
Consensus pattern (41 bp):
AGGACAAAGGAAAAAAGAAAAGAAAAGTGTCTTGCTCCTTG
Found at i:878898 original size:42 final size:43
Alignment explanation
Indices: 878820--878973 Score: 188
Period size: 42 Copynumber: 3.5 Consensus size: 43
878810 CCTGTTTTTC
* *
878820 GAGGACAAAGGAAAAAAGGAAAACGAAA-TGCATCTTGCTCTTT
1 GAGGACAAAGGAAAAAAGGAAAA-TAAAGTGCGTCTTGCTCTTT
*
878863 GAGGACAAAAG-AAAAAGGAAAATAAAGTGCGTCTTGCTCTTT
1 GAGGACAAAGGAAAAAAGGAAAATAAAGTGCGTCTTGCTCTTT
* * *
878905 GAGAACTAGAAGGGAAAAGAAGG-AAATGAAGTGCGTCATGCTCTTT
1 GAGGAC-A-AA-GGAAAA-AAGGAAAATAAAGTGCGTCTTGCTCTTT
878951 GAGGACAAAGGAAAAAAGGAAAA
1 GAGGACAAAGGAAAAAAGGAAAA
878974 GGCATCCTGC
Statistics
Matches: 96, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
41 3 0.03
42 34 0.35
43 20 0.21
44 4 0.04
45 2 0.02
46 29 0.30
47 4 0.04
ACGTcount: A:0.45, C:0.11, G:0.27, T:0.17
Consensus pattern (43 bp):
GAGGACAAAGGAAAAAAGGAAAATAAAGTGCGTCTTGCTCTTT
Found at i:878998 original size:37 final size:37
Alignment explanation
Indices: 878951--879022 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
878941 CATGCTCTTT
878951 GAGGACAAAGGAAAAAAGGAAAAGGCATCCTGCTCAA
1 GAGGACAAAGGAAAAAAGGAAAAGGCATCCTGCTCAA
* * *
878988 GAGGGCAAAGGAGAAAAGGAAAAGGCATCTTGCTC
1 GAGGACAAAGGAAAAAAGGAAAAGGCATCCTGCTC
879023 TTTGAGGACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.44, C:0.15, G:0.31, T:0.10
Consensus pattern (37 bp):
GAGGACAAAGGAAAAAAGGAAAAGGCATCCTGCTCAA
Found at i:879076 original size:61 final size:61
Alignment explanation
Indices: 879001--879359 Score: 408
Period size: 61 Copynumber: 6.1 Consensus size: 61
878991 GGCAAAGGAG
* *
879001 AAAAGGAAAAGGCATCTTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT
* * *
879062 AAAAGGAAAAGGCATCCTACTCTTTGAGGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT
* * *
879122 AAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTAGGCTTT
1 -AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
** * * *
879184 GCAAGGAGAAA-GCATTCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTT
1 AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* *
879245 -----G-AAAGGCGTCCTGCTGTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
879300 ------AAAAGGCGTCCTGCTGTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
879355 AAAAG
1 AAAAG
879360 ACGTCCTACT
Statistics
Matches: 264, Mismatches: 22, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
54 3 0.01
55 98 0.37
56 1 0.00
60 25 0.09
61 109 0.41
62 25 0.09
63 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (61 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:879277 original size:55 final size:55
Alignment explanation
Indices: 879129--879380 Score: 324
Period size: 55 Copynumber: 4.5 Consensus size: 55
879119 TTTAAAAAGA
* * *
879129 AAAAGGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTAGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* * * * *
879184 GCAAGGAGAAAGCATTCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTT
1 ---A--A-AAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* *
879245 GAAAGGCGTCCTGCTGTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* *
879300 AAAAGGCGTCCTGCTGTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* *
879355 AAAAGACGTCCTACTCTTTGAGGACT
1 AAAAGGCGTCCTGCTCTTTGAGGACT
879381 AAAGGGCGAA
Statistics
Matches: 172, Mismatches: 19, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
55 122 0.71
56 1 0.01
58 1 0.01
60 1 0.01
61 47 0.27
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:879358 original size:27 final size:27
Alignment explanation
Indices: 879273--879358 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
879263 TGAGGACTGG
879273 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
* ** ** * * *
879300 AAAAGGCGTCCTGC-TGTTTGAGGATTGG
1 AAAATGCCACCAACTTGTGTG-GGCTT-T
879328 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
879355 AAAA
1 AAAA
879359 GACGTCCTAC
Statistics
Matches: 40, Mismatches: 16, Indels: 6
0.65 0.26 0.10
Matches are distributed among these distances:
26 5 0.12
27 17 0.43
28 13 0.32
29 5 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
AAAATGCCACCAACTTGTGTGGGCTTT
Found at i:879521 original size:149 final size:149
Alignment explanation
Indices: 879250--879529 Score: 427
Period size: 149 Copynumber: 1.9 Consensus size: 149
879240 GCTTTGAAAG
* *
879250 GCGTCCTGCTGTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACT
* * * *
879315 GTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTACTCTTTGAGGAC
66 CTTTGAGGATTGAAAAATGCCACCAACTTATGTGGGCTTTAAAAGACATCCTACTCTTTGAGGAC
879380 TAAAGGGCGAAAGGAGAGA
131 TAAAGGGCGAAAGGAGAGA
* * *
879399 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACT
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACT
* * * *
879464 CTTTGAGGA-TGAAAAAATGTCACCAACTTATGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGA
66 CTTTGAGGATTG-AAAAATGCCACCAACTTATGTGGGCTTTAAAAGACATCCTACTCTTTGAGGA
879528 CT
130 CT
879530 GAAATGTGCC
Statistics
Matches: 117, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
148 2 0.02
149 115 0.98
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (149 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACT
CTTTGAGGATTGAAAAATGCCACCAACTTATGTGGGCTTTAAAAGACATCCTACTCTTTGAGGAC
TAAAGGGCGAAAGGAGAGA
Found at i:879542 original size:204 final size:204
Alignment explanation
Indices: 879186--879563 Score: 571
Period size: 204 Copynumber: 1.9 Consensus size: 204
879176 TAGGCTTTGC
*
879186 AAGGAGAAAGCATTCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTTGAAAGG
1 AAGGAGAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTTGAAAGG
* * * * * *
879251 CGTCCTGCTGTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTG
66 CGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTGCTC
*
879316 TTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTACTCTTTGAGGACT
131 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTACTCTTTGAGGACT
879381 AAAGGGCGA
196 AAAGGGCGA
* * ** * *
879390 AAGGAGAGAGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 AAGGAGAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTTGAAAGG
* *
879455 CGTCCTACTCTTTGAGGA-TGAAAAAATGTCACCAACTTATGTGGGCTTTGAAAGGCATCCTGCT
66 CGTCCTACTCTTTGAGGACTG-AAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTGCT
*
879519 CTTTGAGGACT-GAAATGTGCCACCAACTTGTGTGGGCTTTAAAAG
130 CTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAG
879564 GAAAAGGCGT
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
203 6 0.04
204 149 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (204 bp):
AAGGAGAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTTGAAAGG
CGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTGCTC
TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTACTCTTTGAGGACT
AAAGGGCGA
Found at i:879581 original size:61 final size:54
Alignment explanation
Indices: 879399--879594 Score: 232
Period size: 55 Copynumber: 3.5 Consensus size: 54
879389 AAAGGAGAGA
*
879399 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
879454 GCGTCCTACTCTTTGAGGA-TGAAAAAATGTCACCAACTTATGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTG--AAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
*
879509 GCATCCTGCTCTTTGAGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
*
879570 GCGTCCTGCTCTTTAAGGACTGAAA
1 GCGTCCTGCTCTTTGAGGACTGAAA
879595 AGTGAAAGGA
Statistics
Matches: 119, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
53 1 0.01
54 4 0.03
55 84 0.71
56 2 0.02
60 1 0.01
61 27 0.23
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (54 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:880593 original size:10 final size:9
Alignment explanation
Indices: 880580--880659 Score: 94
Period size: 9 Copynumber: 8.9 Consensus size: 9
880570 CTTTTCTCTC
880580 TTTTTCTTTG
1 TTTTT-TTTG
* *
880590 TTTTGTTTC
1 TTTTTTTTG
880599 TTTTTTTTG
1 TTTTTTTTG
880608 TTGTTTTTTG
1 TT-TTTTTTG
880618 TTGTTTTTTG
1 TT-TTTTTTG
880628 TTTTTTTTG
1 TTTTTTTTG
880637 -TTTTTTTG
1 TTTTTTTTG
880645 --TTTTTTG
1 TTTTTTTTG
880652 TTTTTTTT
1 TTTTTTTT
880660 AAAAAAATGT
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
7 7 0.11
8 8 0.13
9 25 0.40
10 23 0.37
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:880600 original size:13 final size:12
Alignment explanation
Indices: 880586--880659 Score: 73
Period size: 13 Copynumber: 6.1 Consensus size: 12
880576 TCTCTTTTTC
880586 TTTGTTTTGTTT
1 TTTGTTTTGTTT
*
880598 CTTTTTTTTGTTGT
1 -TTTGTTTTGTT-T
880612 TTT-TTGTTGTTT
1 TTTGTT-TTGTTT
880624 TTTGTTTT-TTT
1 TTTGTTTTGTTT
*
880635 TGTTTTTTTGTTT
1 T-TTGTTTTGTTT
880648 TTTGTTTT-TTT
1 TTTGTTTTGTTT
880659 T
1 T
880660 AAAAAAATGT
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
11 8 0.15
12 20 0.38
13 24 0.45
14 1 0.02
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (12 bp):
TTTGTTTTGTTT
Found at i:880603 original size:1 final size:1
Alignment explanation
Indices: 880580--880659 Score: 52
Period size: 1 Copynumber: 80.0 Consensus size: 1
880570 CTTTTCTCTC
* * * * * * * * * * *
880580 TTTTTCTTTGTTTTGTTTCTTTTTTTTGTTGTTTTTTGTTGTTTTTTGTTTTTTTTGTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
880645 TTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTT
880660 AAAAAAATGT
Statistics
Matches: 55, Mismatches: 24, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (1 bp):
T
Found at i:880628 original size:7 final size:7
Alignment explanation
Indices: 880590--880657 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
880580 TTTTTCTTTG
880590 TTTTGTT
1 TTTTGTT
*
880597 TCTT-TT
1 TTTTGTT
880603 TTTTGTT
1 TTTTGTT
*
880610 GTTT-TT
1 TTTTGTT
*
880616 TGTTGTT
1 TTTTGTT
880623 TTTTGTTTT
1 TTTTG--TT
880632 TTTTGTTT
1 TTTTG-TT
880640 TTTTGTT
1 TTTTGTT
880647 TTTTGTT
1 TTTTGTT
880654 TTTT
1 TTTT
880658 TTAAAAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
6 9 0.18
7 27 0.53
8 8 0.16
9 7 0.14
ACGTcount: A:0.00, C:0.01, G:0.13, T:0.85
Consensus pattern (7 bp):
TTTTGTT
Found at i:880651 original size:34 final size:32
Alignment explanation
Indices: 880580--880659 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 32
880570 CTTTTCTCTC
* *
880580 TTTTTCTTTGTTTTGTTTCTTTTTTTTGTTGT
1 TTTTTGTTTTTTTTGTTTCTTTTTTTTGTTGT
* *
880612 TTTTTGTTGTTTTTTGTTTTTTTTGTTTTTTTGT
1 TTTTTGTT-TTTTTTGTTTCTTTT-TTTTGTTGT
880646 TTTTTGTTTTTTTT
1 TTTTTGTTTTTTTT
880660 AAAAAAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
32 7 0.17
33 19 0.45
34 16 0.38
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (32 bp):
TTTTTGTTTTTTTTGTTTCTTTTTTTTGTTGT
Found at i:880656 original size:16 final size:16
Alignment explanation
Indices: 880580--880659 Score: 90
Period size: 17 Copynumber: 4.9 Consensus size: 16
880570 CTTTTCTCTC
* *
880580 TTTTTCTTTGTTTTGT
1 TTTTTGTTTTTTTTGT
*
880596 TTCTTT-TTTTTGTTGT
1 TT-TTTGTTTTTTTTGT
880612 TTTTTGTTGTTTTTTGT
1 TTTTTGTT-TTTTTTGT
*
880629 TTTTTTTGTTTTTTTGT
1 TTTTTGT-TTTTTTTGT
880646 TTTTTGTTTTTTTT
1 TTTTTGTTTTTTTT
880660 AAAAAAATGT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
15 3 0.05
16 21 0.38
17 30 0.55
18 1 0.02
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (16 bp):
TTTTTGTTTTTTTTGT
Found at i:890110 original size:53 final size:53
Alignment explanation
Indices: 890046--890182 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
890036 CTACTTCCAA
890046 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
890099 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
890152 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
890183 TATGCAATTT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 67 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:890215 original size:20 final size:20
Alignment explanation
Indices: 890152--890222 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
890142 GCCAATGTCC
**
890152 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
890172 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
890192 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
890212 TGTATCGATAC
1 TGTATCGATAC
890223 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:890288 original size:21 final size:21
Alignment explanation
Indices: 890262--890302 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
890252 GTCAACCTTG
890262 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
890283 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
890303 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:892319 original size:4 final size:4
Alignment explanation
Indices: 892312--892350 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
892302 AAAAAAATTA
892312 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
892351 CACCTCAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:895627 original size:20 final size:20
Alignment explanation
Indices: 895574--895628 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
895564 AATTTCCCAG
**
895574 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
895594 ATGTATCGATACATTGAGT-A
1 ATGTATCGATACATTGA-TCA
895614 ATGTATCGATACATT
1 ATGTATCGATACATT
895629 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:895682 original size:19 final size:17
Alignment explanation
Indices: 895658--895721 Score: 64
Period size: 19 Copynumber: 3.8 Consensus size: 17
895648 AGCGAAACAT
895658 TGTATCGATACGATACTTA
1 TGTATCGATAC-A-ACTTA
895677 TGTATCGATAC-A--T-
1 TGTATCGATACAACTTA
895690 TGTATCGATACAACACTTA
1 TGTATCGATAC-A-ACTTA
895709 TGTATCGATACAA
1 TGTATCGATACAA
895722 TTACTATTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
17 1 0.03
18 2 0.05
19 22 0.56
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (17 bp):
TGTATCGATACAACTTA
Found at i:895695 original size:13 final size:13
Alignment explanation
Indices: 895677--895701 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
895667 ACGATACTTA
895677 TGTATCGATACAT
1 TGTATCGATACAT
895690 TGTATCGATACA
1 TGTATCGATACA
895702 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:895695 original size:32 final size:32
Alignment explanation
Indices: 895654--895720 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
895644 TCGTAGCGAA
* *
895654 ACATTGTATCGATACGATACTTATGTATCGAT
1 ACATTGTATCGATACAACACTTATGTATCGAT
895686 ACATTGTATCGATACAACACTTATGTATCGAT
1 ACATTGTATCGATACAACACTTATGTATCGAT
895718 ACA
1 ACA
895721 ATTACTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
ACATTGTATCGATACAACACTTATGTATCGAT
Done.