Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold350
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1036165
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 7 of 8
Found at i:896145 original size:49 final size:49
Alignment explanation
Indices: 895917--897814 Score: 1816
Period size: 49 Copynumber: 39.0 Consensus size: 49
895907 AAGAGTGATA
* * * * *
895917 AAGGTGCCAATATGCTGATTCAAGACCAGTGATATTGGGCTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* *** * * * * * *
895966 TAAAGAATTTTAATGTGCTGATTCACGGTCAGTGACATTAGTCTTGAAGATGAG
1 --AAG-GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT--G
** * **
896020 AACAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACG
1 AA-GGTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGAT---G
* * * * *
896074 AAGGCGCTAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* *
896123 AAGGTGCCACTGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* *
896172 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACGTTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* * *
896224 AAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGTTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
*
896273 AAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* * *
896325 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
896374 AAGGTGCCAATGTGCTAATTCAAGTCCAGTGACGTTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
896423 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 ---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
*
896475 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
896524 -AGGTGCCAATATGCTGATTCAGGGCCAACGATATTAGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
896572 AAGGTGCCAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* * * * *
896624 AAGGTGCAAATATGCTGATTCAAGGTCTGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
896673 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-GATG
* * *
896725 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * **
896771 -A--TGCCAATGTACTGATTCAAGGCCAGCGACATTAGTCTTAAAGACA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
896817 AAGGTGCCAATATGCTGATGCAAGGCCAGCGATATTTGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
896860 AAGGTGCCAATGTGCTGATTAAAGGCTAGCGACATTGGTCTTAAAGA--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
896907 CAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTAGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
896950 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* * ** * * *
897002 AAGGCGCCAATATGCTGATTCGCGGCCAACGATATTGGATTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
897051 AAGGTGCCAATGTGCTGATTCAAGGGCAACAACATTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* * *
897103 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
*
897152 AAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* * * * ** * *
897204 AAGGCGCCAATATGTTAATTCAAGGCCAATGATATTGGACTTAAAAATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
897253 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
* *
897305 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
**
897351 -A--TGCCAATGTGCTGATTCAAGGATAGCGACATTGGACTTAAAGATGACG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---G
** * *
897400 AAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * **
897446 -A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGACA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* *
897492 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* *
897535 AAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGA--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
897582 CAGGTGCCAATATGTTGATTCAAGGCCAGTGATATTGGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* **
897625 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
897674 AAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTAGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
897717 AAGGTGCCAATGTGCTGATTCAAGCCCAGTGACATTAGTCTTAAAGGA-A
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA-GATG
* * * * *
897766 AAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTCGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
897815 CCACGAAGTT
Statistics
Matches: 1529, Mismatches: 236, Indels: 166
0.79 0.12 0.09
Matches are distributed among these distances:
43 282 0.18
44 6 0.00
45 9 0.01
46 3 0.00
47 76 0.05
48 45 0.03
49 570 0.37
50 6 0.00
51 8 0.01
52 483 0.32
53 37 0.02
54 4 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
Found at i:896254 original size:101 final size:101
Alignment explanation
Indices: 895917--897814 Score: 2260
Period size: 101 Copynumber: 19.5 Consensus size: 101
895907 AAGAGTGATA
* * * * ***
895917 AAGGTGCCAATATGCTGATTCAAGACCAGTGATATTGGGCTTAAAGATGTAAAGAATTTTAATGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAG-GTGCCAATGT
* * * * * *
895982 GCTGATTCACGGTCAGTGACATTAGTCTTGAAGATGA-G
63 GCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
** * * * ** * *
896020 AACAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGCTAAT
1 AA-GGTGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT---GAAGGTGCCAAT
* * *
896085 ATGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT---G
61 GTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* * *
896123 AAGGTGCCACTGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
896188 GATTCAAGGCCAGCGACGTTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* * *
896224 AAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGTTGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
896289 GATTCAAGGCCAGTGACATTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
*
896325 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * * * *
896390 AATTCAAGTCCAGTGACGTTGGACTTAAAGATGACA
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
*
896426 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
896491 GATTCAAGGCCAGCGACATTGGTCTTAAAGAT---G
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* * *
896524 -AGGTGCCAATATGCTGATTCAGGGCCAACGATATTAGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
896588 GATTCAAGGCTAGTGACATTGGTCTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* * *
896624 AAGGTGCAAATATGCTGATTCAAGGTCTGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
896689 GATTCAAGGCCAGCGACATTGGACTTAAAGATGATG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* *
896725 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--TGCCAATGTACT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
896784 GATTCAAGGCCAGCGACATTAGTCTT-AA-A-GACA
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* *
896817 AAGGTGCCAATATGCTGATGCAAGGCCAGCGATATTTGACTT----A--AAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
896876 GATTAAAGGCTAGCGACATTGGTCTT-AA-A-GAC-
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* *
896908 -AGGTGCCAATATGTTGATTCAAGGCCAGCGATATTAGACTT----A--AAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
896966 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* ** * *
897002 AAGGCGCCAATATGCTGATTCGCGGCCAACGATATTGGATTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
897067 GATTCAAGGGCAACAACATTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
*
897103 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
897168 GATTCAAGGCTAGCGACATTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* * * ** *
897204 AAGGCGCCAATATGTTAATTCAAGGCCAATGATATTGGACTTAAAAATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
897269 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
897305 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--TGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
**
897364 GATTCAAGGATAGCGACATTGGACTTAAAGATGACG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
**
897400 AAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--TGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
897459 GATTCAAGGCCAGCGACATTAGTCTT-AA-A-GACA
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
897492 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* *
897551 GATTCAAGGCTAGCGACATTGGTCTT-AA-A-GAC-
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* *
897583 -AGGTGCCAATATGTTGATTCAAGGCCAGTGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* *
897641 GATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACA
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* *
897674 AAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTAGACTT----A--AAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * * * *
897733 GATTCAAGCCCAGTGACATTAGTCTTAAAG--GA-A
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
* * *
897766 AAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTCGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
897815 CCACGAAGTT
Statistics
Matches: 1606, Mismatches: 150, Indels: 83
0.87 0.08 0.05
Matches are distributed among these distances:
90 169 0.11
91 2 0.00
92 283 0.18
93 9 0.01
94 4 0.00
95 194 0.12
96 1 0.00
97 92 0.06
98 44 0.03
99 3 0.00
100 5 0.00
101 693 0.43
102 29 0.02
103 5 0.00
104 27 0.02
105 42 0.03
106 3 0.00
108 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (101 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
Found at i:896791 original size:43 final size:43
Alignment explanation
Indices: 896730--897817 Score: 709
Period size: 43 Copynumber: 23.1 Consensus size: 43
896720 TGATGAAGGC
*
896730 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * * *
896773 GCCAATGTACTGATTCAAGGCCAGCGACATTAGTCTTAAAGACAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
* * * *
896822 GCCAATATGCTGATGCAAGGCCAGCGATATTTGACTTAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * * *
896865 GCCAATGTGCTGATTAAAGGCTAGCGACATTGGTCTTAAAGACAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--A--T
* * * *
896912 GCCAATATGTTGATTCAAGGCCAGCGATATTAGACTTAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
*
896955 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* ** * *
896998 GACGAAGGCGCCAATATGCTGATTCGCGGCCAACGATATTGGATTTAAAGATGAAGGT
1 ---------GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--T
* * * *
897056 GCCAATGTGCTGATTCAAGGGCAACAACATTGGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
*
897099 GACGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGT
1 ---------GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--T
* *
897157 GCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * * **
897200 GACGAAGGCGCCAATATGTTAATTCAAGGCCAATGATATTGGACTTAAAAATGAAGGT
1 ---------GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT--AAA-G-A--T
*
897258 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--A-G-A--T
*
897310 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
** *
897353 GCCAATGTGCTGATTCAAGGATAGCGACATTGGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
*
897396 GACGAAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
1 -------G--CCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * *
897448 GCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGACAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
* *
897497 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * *
897540 GCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--A--T
* * * *
897587 GCCAATATGTTGATTCAAGGCCAGTGATATTGGACTTAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* *
897630 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
* * * *
897679 GCCAATATGCTAATTCAAGGCCAGCGATATTAGACTTAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * * * *
897722 GCCAATGTGCTGATTCAAGCCCAGTGACATTAGTCTTAAAGGAAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAA-G---A--T
* * * *
897771 GCCAATATGCTGATTCAAGGCTAGTGATATTCGACTTAAAGAT
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
897814 GCCA
1 GCCA
897818 CGAAGTTGTG
Statistics
Matches: 832, Mismatches: 124, Indels: 178
0.73 0.11 0.16
Matches are distributed among these distances:
43 303 0.36
44 1 0.00
45 5 0.01
46 3 0.00
47 76 0.09
48 5 0.01
49 245 0.29
50 3 0.00
52 173 0.21
53 4 0.00
54 5 0.01
55 3 0.00
56 3 0.00
58 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (43 bp):
GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
Found at i:897926 original size:27 final size:27
Alignment explanation
Indices: 897841--897927 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
897831 TGTGAGAAAG
* *
897841 AAAGGGATGCCACGGAGGTGTGGGCTTA
1 AAAGGG-TGCCACGGAGTTGTGGACTTA
*
897869 AAAAGGTGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
**
897896 AAAGGGTGCCACAAAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
897923 AAAGG
1 AAAGG
897928 AACAAGGTGC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 48 0.91
28 5 0.09
ACGTcount: A:0.31, C:0.14, G:0.36, T:0.20
Consensus pattern (27 bp):
AAAGGGTGCCACGGAGTTGTGGACTTA
Found at i:898073 original size:31 final size:30
Alignment explanation
Indices: 898000--898178 Score: 177
Period size: 31 Copynumber: 5.9 Consensus size: 30
897990 TTAAAAAGAA
* * * *
898000 AAAGGTGCCACAGAGTCGTGGAC-TTAGAA
1 AAAGATGCCACTGAGTCGTGGACTTTGGAG
*
898029 AAAGGATGCCACTGAGTTGTGGACTTTGGA-
1 AAA-GATGCCACTGAGTCGTGGACTTTGGAG
*
898059 AAGAGATTGCCACTGAGTTGTGGACTTTGGAG
1 AA-AGA-TGCCACTGAGTCGTGGACTTTGGAG
*
898091 AAAAAATGCCACTGAGTCGTGGACTTTGG-G
1 -AAAGATGCCACTGAGTCGTGGACTTTGGAG
* * *
898121 ACAAAATGCCACTGAGTCGCGGGCTTT-GAG
1 A-AAGATGCCACTGAGTCGTGGACTTTGGAG
898151 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AA-AGA-TGCCACTGAGTCGTGGACTTT
898179 AAGATGGTAT
Statistics
Matches: 129, Mismatches: 11, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
29 6 0.05
30 49 0.38
31 70 0.54
32 2 0.02
33 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (30 bp):
AAAGATGCCACTGAGTCGTGGACTTTGGAG
Found at i:898162 original size:61 final size:62
Alignment explanation
Indices: 898005--898178 Score: 182
Period size: 61 Copynumber: 2.8 Consensus size: 62
897995 AAGAAAAAGG
* * *
898005 TGCCACAGAGTCGTGGAC-TT--AGAAAAAGGATGCCACTGAGTTGTGGACTTTGGAAAGAGAT
1 TGCCACTGAGTCGCGGACTTTGGAGAAAAA--ATGCCACTGAGTCGTGGACTTTGGAAAGAGAT
* *
898066 TGCCACTGAGTTGTGGACTTTGGAGAAAAAATGCCACTGAGTCGTGGACTTTGGGACAA-A-A-
1 TGCCACTGAGTCGCGGACTTTGGAGAAAAAATGCCACTGAGTCGTGGACTTT-GGA-AAGAGAT
* * *
898127 TGCCACTGAGTCGCGGGCTTT-GAGAAGAGATTGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGCGGACTTTGGAGAA-AAAATGCCACTGAGTCGTGGACTTT
898179 AAGATGGTAT
Statistics
Matches: 99, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
60 5 0.05
61 57 0.58
62 24 0.24
63 4 0.04
64 9 0.09
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (62 bp):
TGCCACTGAGTCGCGGACTTTGGAGAAAAAATGCCACTGAGTCGTGGACTTTGGAAAGAGAT
Found at i:899407 original size:12 final size:12
Alignment explanation
Indices: 899389--899437 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
899379 GCTCTCTTCC
899389 TTTTTTTTGTG-
1 TTTTTTTTGTGT
*
899400 TATTTTTTGT-T
1 TTTTTTTTGTGT
*
899411 TTTGTTTTTGTTT
1 TTT-TTTTTGTGT
899424 TTTTTTTTGTGT
1 TTTTTTTTGTGT
899436 TT
1 TT
899438 GCACTTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
11 11 0.34
12 17 0.53
13 4 0.12
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (12 bp):
TTTTTTTTGTGT
Found at i:899414 original size:6 final size:6
Alignment explanation
Indices: 899403--899438 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
899393 TTTTGTGTAT
* *
899403 TTTTTG TTTTTG TTTTTG TTTTTT TTTTTG TGTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
899439 CACTTTTGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:906384 original size:13 final size:13
Alignment explanation
Indices: 906366--906393 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
906356 ATACAAAGAT
906366 CAATGTATCGATA
1 CAATGTATCGATA
906379 CAATGTATCGATA
1 CAATGTATCGATA
906392 CA
1 CA
906394 TTGTGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:906469 original size:19 final size:19
Alignment explanation
Indices: 906445--906527 Score: 88
Period size: 19 Copynumber: 4.7 Consensus size: 19
906435 AGCGATACAT
*
906445 TGTATCGATACAATACTTA
1 TGTATCGATACAACACTTA
*
906464 TGTATCGATACACCACTTA
1 TGTATCGATACAACACTTA
906483 TGTATCGAT---ACA-TTA
1 TGTATCGATACAACACTTA
* *
906498 --TATCAATACACCACTTA
1 TGTATCGATACAACACTTA
906515 TGTATCGATACAA
1 TGTATCGATACAA
906528 TTACTGTTTG
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
13 6 0.12
15 3 0.06
16 4 0.08
17 3 0.06
19 35 0.69
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:906512 original size:32 final size:32
Alignment explanation
Indices: 906466--906526 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
906456 AATACTTATG
*
906466 TATCGATACACCACTTATGTATCGATACATTA
1 TATCAATACACCACTTATGTATCGATACATTA
906498 TATCAATACACCACTTATGTATCGATACA
1 TATCAATACACCACTTATGTATCGATACA
906527 ATTACTGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (32 bp):
TATCAATACACCACTTATGTATCGATACATTA
Found at i:908850 original size:28 final size:28
Alignment explanation
Indices: 908796--908870 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
908786 TGGAGATAAC
* **
908796 AACGGGGCTGGAGTATCCCCTTAGAAAT
1 AACGGGGTTGGAGTATCCCAATAGAAAT
908824 AACGGGGTTGGAGTATCCTCAAT-GAAAT
1 AACGGGGTTGGAGTATCC-CAATAGAAAT
** *
908852 ATTGGGGTTGGAGCATCCC
1 AACGGGGTTGGAGTATCCC
908871 CGATTATGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.03
28 37 0.93
29 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (28 bp):
AACGGGGTTGGAGTATCCCAATAGAAAT
Found at i:908950 original size:50 final size:51
Alignment explanation
Indices: 908856--908970 Score: 164
Period size: 50 Copynumber: 2.3 Consensus size: 51
908846 TGAAATATTG
* * *
908856 GGGTTGGAGCATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAATC-
1 GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAACCA
908906 GGAGTTAGAGTATCCCCGATTATG-AAAATTGATGTTTT-AGAAATAAAACCA
1 GG-GTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTGA-AAATAAAACCA
908957 GGGTTAGAGTATCC
1 GGGTTAGAGTATCC
908971 TCTTGAAAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
49 1 0.02
50 37 0.63
51 21 0.36
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.30
Consensus pattern (51 bp):
GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAACCA
Found at i:909120 original size:130 final size:128
Alignment explanation
Indices: 908887--909311 Score: 530
Period size: 130 Copynumber: 3.3 Consensus size: 128
908877 TGAAAAATTG
* *
908887 ATGTTTTGAAAATAAAATCGGAGTTAGAGTATCCCCGATTATGAAAATTGATGTTTTAGAAATAA
1 ATGTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTGTGAAAATTGATGTTTTAGAAATAA
* * * * *
908952 AACCAGGGTTAGAGTATCCTCTTGAAAATAACGGGGTTAGAGTATCACCGATGGTGGAATATCA
66 AACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATC-CCGATAGTGGAAAATCA
* *
909016 ATGTTTTGGAAATAAAATCGAAGTTAGAGTATCCCCGACTGTGAAAAATTGATGTTTTAGAAATA
1 ATGTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTGTG-AAAATTGATGTTTTAGAAATA
* * *
909081 AAACCGGGGTTGGAGTATCCCCTTGGAAATAACGAGGTTAGAGTATCCCTGATAGTGGAAAATCG
65 AAACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATCCC-GATAGTGGAAAATCA
* * * * **
909146 ATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCTAATTGTGGAAAATTGATGTTTTAGAAATA
1 ATGTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTGT-GAAAATTGATGTTTTAGAAATA
* * * *
909211 AAACCAGGGTTGGAGTATCACCTTGGAAATAACGGGGTTGGAGTATCCCCGATTA-TGAAAAATT
65 AAACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTAGAGTAT-CCCGA-TAGTGGAAAATC
*
909275 G
128 A
* * * *
909276 GTGTTTTGAAAATAAAA-CCGAGGTTGGAGTATCCCC
1 ATGTTTTGGAAATAAAATCGGA-GTTAGAGTATCCCC
909312 TCGGAAATAA
Statistics
Matches: 258, Mismatches: 32, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
129 43 0.17
130 209 0.81
131 6 0.02
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (128 bp):
ATGTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTGTGAAAATTGATGTTTTAGAAATAA
AACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATCCCGATAGTGGAAAATCA
Found at i:909179 original size:51 final size:51
Alignment explanation
Indices: 909116--909229 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
909106 GAAATAACGA
* * *
909116 GGTTAGAGTATCCCTGATAGTGGAAAATCGATGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCTAATAGTGGAAAATCGATGTTTTAGAAATAAAACCAG
* *
909167 GGTTGGAGTATCCCTAATTGTGGAAAATTGATGTTTTAGAAATAAAACCAG
1 GGTTGGAGTATCCCTAATAGTGGAAAATCGATGTTTTAGAAATAAAACCAG
909218 GGTTGGAGTATC
1 GGTTGGAGTATC
909230 ACCTTGGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCTAATAGTGGAAAATCGATGTTTTAGAAATAAAACCAG
Found at i:909247 original size:79 final size:79
Alignment explanation
Indices: 909164--909331 Score: 241
Period size: 79 Copynumber: 2.1 Consensus size: 79
909154 GAAATAAAAC
* * *
909164 CGGGGTTGGAGTATCCCTAATTGTGGAAAATTGATGTTTT-AGAAATAAAACC-AGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGA-AAATAAAACCGA-GGTTGGAGT
*
909227 ATCACCTTGGAAATAA
64 ATCACCTCGGAAATAA
* *
909243 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGAAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGAAAATAAAACCGAGGTTGGAGTAT
*
909308 CCCCTCGGAAATAA
66 CACCTCGGAAATAA
909322 CGGGGTTGGA
1 CGGGGTTGGA
909332 AAAATTGTTG
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 78 0.98
80 2 0.03
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGAAAATAAAACCGAGGTTGGAGTAT
CACCTCGGAAATAA
Found at i:919760 original size:1 final size:1
Alignment explanation
Indices: 919754--919818 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
919744 ACTTTCTTTT
* * * * * ** *
919754 AAAAAAACAAAAAAAAACAAAAAAAAAACAAAAAAACAAAAAAAAACAAAACCAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
919819 GAGAAAAGAA
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:919778 original size:19 final size:19
Alignment explanation
Indices: 919754--919818 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
919744 ACTTTCTTTT
919754 AAAAAAACAAAAAAAAACAA
1 AAAAAAAC-AAAAAAAACAA
919774 AAAAAAA-ACAAAAAAACAA
1 AAAAAAACA-AAAAAAACAA
** *
919793 AAAAAAACAAAACCAAGAA
1 AAAAAAACAAAAAAAACAA
919812 AAAAAAA
1 AAAAAAA
919819 GAGAAAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
18 1 0.03
19 31 0.77
20 8 0.20
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (19 bp):
AAAAAAACAAAAAAAACAA
Found at i:919820 original size:10 final size:10
Alignment explanation
Indices: 919754--919804 Score: 86
Period size: 10 Copynumber: 5.2 Consensus size: 10
919744 ACTTTCTTTT
919754 AAAAAAACAA
1 AAAAAAACAA
919764 AAAAAAACAA
1 AAAAAAACAA
*
919774 AAAAAAA-AC
1 AAAAAAACAA
919783 AAAAAAACAA
1 AAAAAAACAA
919793 AAAAAAACAA
1 AAAAAAACAA
919803 AA
1 AA
919805 CCAAGAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
9 8 0.21
10 30 0.79
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:919825 original size:12 final size:11
Alignment explanation
Indices: 919754--919817 Score: 78
Period size: 11 Copynumber: 5.6 Consensus size: 11
919744 ACTTTCTTTT
919754 AAAAAAAC-AA
1 AAAAAAACAAA
919764 AAAAAAACAAA
1 AAAAAAACAAA
919775 AAAAAAACAAA
1 AAAAAAACAAA
919786 AAAACAAA-AAA
1 AAAA-AAACAAA
919797 AAACAAAACCAAGA
1 AAA-AAAA-CAA-A
919811 AAAAAAA
1 AAAAAAA
919818 AGAGAAAAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
10 8 0.17
11 26 0.54
12 4 0.08
13 6 0.12
14 4 0.08
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:919825 original size:29 final size:29
Alignment explanation
Indices: 919754--919818 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
919744 ACTTTCTTTT
*
919754 AAAAAAAC-AAAAAAAAACAAAAAAAAAA
1 AAAAAAACAAAAAAAAAACAAAAAAACAA
* *
919782 CAAAAAAAC-AAAAAAAAACAAAACCAAGAA
1 -AAAAAAACAAAAAAAAAACAAAA-AAACAA
919812 AAAAAAA
1 AAAAAAA
919819 GAGAAAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (29 bp):
AAAAAAACAAAAAAAAAACAAAAAAACAA
Found at i:923383 original size:52 final size:52
Alignment explanation
Indices: 923305--923453 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 52
923295 CAAAATATGA
*
923305 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
** *
923357 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTTGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
* **
923409 AAATTTTCCTGCATGTATCGATACAAAG-ATCAATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAAT-AATGTATCGATACA
923454 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
Found at i:923457 original size:13 final size:13
Alignment explanation
Indices: 923439--923466 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
923429 ATACAAAGAT
923439 CAATGTATCGATA
1 CAATGTATCGATA
923452 CAATGTATCGATA
1 CAATGTATCGATA
923465 CA
1 CA
923467 TTTAAGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:923544 original size:33 final size:33
Alignment explanation
Indices: 923507--923573 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
923497 AGTAGCTTAA
923507 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
923540 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
923573 A
1 A
923574 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:923547 original size:13 final size:13
Alignment explanation
Indices: 923529--923553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
923519 CAAAAAAATA
923529 TGTATCGATACAT
1 TGTATCGATACAT
923542 TGTATCGATACA
1 TGTATCGATACA
923554 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:924480 original size:61 final size:61
Alignment explanation
Indices: 924385--925207 Score: 993
Period size: 61 Copynumber: 13.4 Consensus size: 61
924375 TTTCTCCATT
* * * * *
924385 CACTTTCAAGTCCTCAAAGAGCAGGATGCCTTCTCCTTGTAAAGCCTACACAAGTTGGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * *
924446 CACTTCCCAATCCTCAAAGAGTAGGACGCCTTCTCCTTGTAAAGCCCACACAAGTTGGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * * * *
924507 CACTTTTCAGTCCTTAAGGAGTAAGACGCCTTTTCCTTTCAAAGCCCATACAAGTTAGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
924568 CACTTTTCAGTCCTCAAGGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
924629 CACTTTTCTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTAG
1 CAC-TTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * *
924691 CACCTTT-TAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTGAAGCCCATACAAATTAGTGG
1 CA-CTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* ** * *
924752 CATTTTTAAGTCCTCAAGGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * *
924813 CACTTTTCAGTCCTCAAGGGGCAGGACGTCTTTTCCTTTTAAAGCCCATACAAGTTGGTGA
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
*
924874 CACTTTTCAGGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTCCA-GTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
924936 CACTTTTCTAGTCCTCAAAAAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTAGTGG
1 CAC-TTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
924998 CATTTTCTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
925059 CACTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * ** * * *
925120 AACCTTCCAGTCCTCAAAGAGCAGGATG-CTTTCTTCTTGCAAAGCCAATACAAGTTGGTGA
1 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
925181 CACTTTCTAGTCCCCAAGGAGCAGGAC
1 CACTTTCCAGTCCTCAAAGAGCAGGAC
925208 CCATTTCATT
Statistics
Matches: 668, Mismatches: 88, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
60 7 0.01
61 499 0.75
62 157 0.24
63 5 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (61 bp):
CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:924823 original size:245 final size:244
Alignment explanation
Indices: 924388--925207 Score: 1083
Period size: 245 Copynumber: 3.3 Consensus size: 244
924378 CTCCATTCAC
* * * *
924388 TTTCAAGTCCTCAAAGAGCAGGATGCCTTCTCCTTGTAAAGCCTACACAAGTTGGTGGCA-CTTC
1 TTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * * * * *
924452 CCAATCCTCAAAGAGTAGGACGCCTTCTCCTTGTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
65 CTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCA-TTTTTAG
* * * * *
924517 TCCTTAAGGAGTAAGACGCCTTTTCCTTTCAAAGCCCATACAAGTTAGTGGCACTTTTCAGTCCT
129 TCCTCAAGGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCT
*
924582 CAAGGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
194 CAAGGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * *
924633 TTTCTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTT
1 TTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
924698 -TAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTGAAGCCCATACAAATTAGTGGCATTTTTAAG
65 CTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTT-AG
* *
924762 TCCTCAAGGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCT
129 TCCTCAAGGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCT
* * * * *
924827 CAAGGGGCAGGACGTCTTTTCCTTTTAAAGCCCATACAAGTTGGTGACACT
194 CAAGGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
924878 TTTCAGGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT
1 TTTCA-GTCCTCAAAGAGCAGGACGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
924943 CTAGTCCTCAAAAAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCTAG
65 CTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTT-TAG
* *
925008 TCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCTAGTCC
129 TCCTCAAGGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCC
* * * *
925072 TCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGAACC
193 TCAAGGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * * * * * *
925124 TTCCAGTCCTCAAAGAGCAGGATG-CTTTCTTCTTGCAAAGCCAATACAAGTTGGTGACA-CTTT
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTT-TCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
925187 CTAGTCCCCAAGGAGCAGGAC
65 CTAGTCCTCAAAGAGCAGGAC
925208 CCATTTCATT
Statistics
Matches: 502, Mismatches: 66, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
244 30 0.06
245 310 0.62
246 161 0.32
247 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (244 bp):
TTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTTC
TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTTAGTC
CTCAAGGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCA
AGGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
Found at i:927457 original size:51 final size:50
Alignment explanation
Indices: 927402--927513 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 50
927392 TTTCCGAGAG
*
927402 GATACTCTAA-TCCCAGTTTTATTTCTAAAACACCAATTTTCCACAATCGGA
1 GATACTCCAACTCCCA-TTTTATTTCTAAAACACCAATTTT-CACAATCGGA
* * *
927453 GATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTCATAATCGGG
1 GATACTCCAACTCCCATTTTATTTCTAAAACACCAATTTTCACAATCGGA
927503 GATACTCCAAC
1 GATACTCCAAC
927514 CCCCTTCATC
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
50 19 0.34
51 33 0.59
52 4 0.07
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (50 bp):
GATACTCCAACTCCCATTTTATTTCTAAAACACCAATTTTCACAATCGGA
Found at i:933241 original size:22 final size:24
Alignment explanation
Indices: 933211--933254 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
933201 CCTCTCAATC
933211 TCTTCAAGA-ATTATACCCCAAAT
1 TCTTCAAGAGATTATACCCCAAAT
*
933234 TCTT-AAGAGATTGTACCCCAA
1 TCTTCAAGAGATTATACCCCAA
933255 GGTTGAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (24 bp):
TCTTCAAGAGATTATACCCCAAAT
Found at i:940464 original size:43 final size:43
Alignment explanation
Indices: 940416--940512 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
940406 TTTCATAATT
940416 TATCGATACATGCATTTGAAATTTATAGTCATTGGGCTCAATA
1 TATCGATACATGCATTTGAAATTTATAGTCATTGGGCTCAATA
*
940459 TATCGATACATGCATTTGAAATTTATAGTCGTTGGGCTCAATA
1 TATCGATACATGCATTTGAAATTTATAGTCATTGGGCTCAATA
940502 TATCGATACAT
1 TATCGATACAT
940513 TTCACCATGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37
Consensus pattern (43 bp):
TATCGATACATGCATTTGAAATTTATAGTCATTGGGCTCAATA
Found at i:941804 original size:30 final size:30
Alignment explanation
Indices: 941754--941881 Score: 105
Period size: 30 Copynumber: 4.2 Consensus size: 30
941744 AAATCTTTTT
* * *
941754 CCTTCTTTAACATTCACGACTCAATGGCGTC
1 CCTTC-TTAAAATCCACGACTCAATGGCATC
* * * *
941785 CCTTCTTAAAATCCACGACTTAGTGGTATT
1 CCTTCTTAAAATCCACGACTCAATGGCATC
*
941815 CCTTCTTCAAAGA-CCACGACTCAGTGGCATC
1 CCTTCTT-AAA-ATCCACGACTCAATGGCATC
* * * *
941846 CCTTCTCAAAGTCCATGATTCAATGGCATC
1 CCTTCTTAAAATCCACGACTCAATGGCATC
*
941876 TCTTCT
1 CCTTCT
941882 CAAAGTCACA
Statistics
Matches: 78, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
30 48 0.62
31 29 0.37
32 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (30 bp):
CCTTCTTAAAATCCACGACTCAATGGCATC
Found at i:941881 original size:61 final size:59
Alignment explanation
Indices: 941768--941915 Score: 142
Period size: 61 Copynumber: 2.5 Consensus size: 59
941758 CTTTAACATT
* * * * *
941768 CACGACTCAATGGCGTCCCTTCTTAAAATCCACGACTTAGTGGTATTCCTTCTTCAAAGAC
1 CACGACTCAGTGGCATCCCTTCTTAAAGTCCACGACTTAATGGCATTCCTTC-TCAAAG-C
* * *
941829 CACGACTCAGTGGCATCCCTTCTCAAAGTCCATGA-TTCAATGGCA-TCTCTTCTCAAAGT
1 CACGACTCAGTGGCATCCCTTCTTAAAGTCCACGACTT-AATGGCATTC-CTTCTCAAAGC
* *
941888 CACAACTCAGT-GCACCCCTT-TTAAAGTC
1 CACGACTCAGTGGCATCCCTTCTTAAAGTC
941916 TATAACTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
57 7 0.09
58 8 0.11
59 10 0.14
60 10 0.14
61 39 0.53
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.28
Consensus pattern (59 bp):
CACGACTCAGTGGCATCCCTTCTTAAAGTCCACGACTTAATGGCATTCCTTCTCAAAGC
Found at i:941882 original size:30 final size:30
Alignment explanation
Indices: 941768--941896 Score: 125
Period size: 30 Copynumber: 4.3 Consensus size: 30
941758 CTTTAACATT
* * *
941768 CACGACTCAATGGCGTCCCTTCTTAAAATC
1 CACGACTCAATGGCATCCCTTCTCAAAGTC
* * * * *
941798 CACGACTTAGTGGTATTCCTTCTTCAAAGAC
1 CACGACTCAATGGCATCCCTTC-TCAAAGTC
*
941829 CACGACTCAGTGGCATCCCTTCTCAAAGTC
1 CACGACTCAATGGCATCCCTTCTCAAAGTC
* * *
941859 CATGATTCAATGGCATCTCTTCTCAAAGT-
1 CACGACTCAATGGCATCCCTTCTCAAAGTC
*
941888 CACAACTCA
1 CACGACTCA
941897 GTGCACCCCT
Statistics
Matches: 79, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
29 6 0.08
30 49 0.62
31 24 0.30
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (30 bp):
CACGACTCAATGGCATCCCTTCTCAAAGTC
Found at i:941933 original size:29 final size:29
Alignment explanation
Indices: 941883--942149 Score: 101
Period size: 30 Copynumber: 8.8 Consensus size: 29
941873 ATCTCTTCTC
*
941883 AAAGTC-ACAACTCAGT-GCACCCCTTTT
1 AAAGTCTACAACTCCGTGGCACCCCTTTT
* *
941910 AAAGTCTATAACTCCGTGGCACCCTTTTTT
1 AAAGTCTACAACTCCGTGGCACCC-CTTTT
* * * *
941940 TAAG-CTCACAACTTCGTGGCATCTCTTTT
1 AAAGTCT-ACAACTCCGTGGCACCCCTTTT
* * * *
941969 AAAGTCCATAATTCCATGGCACCAGCCTTTTCTTTT
1 AAAGTCTACAACTCCGTGGCA-C--CC----CTTTT
* * * *
942005 TAAGTCCACGACTCCGTGGCACCCTTTTTT
1 AAAGTCTACAACTCCGTGGCACCC-CTTTT
* * *
942035 TAAGT-TCACAACTCTGTGGCACCTTTCTCTATT
1 AAAGTCT-ACAACTCCGTGGCACC---C-CTTTT
* * * * *
942068 AAAGTCCATAACTCCGCTGGTATCTCTTTT
1 AAAGTCTACAACTCCG-TGGCACCCCTTTT
* ** * *
942098 AAAGTTTACAACTTTGTGGCATCTCTTTT
1 AAAGTCTACAACTCCGTGGCACCCCTTTT
*
942127 AAAGTCCACAACTCCGTGGCACC
1 AAAGTCTACAACTCCGTGGCACC
942150 ACCATTTTTT
Statistics
Matches: 175, Mismatches: 47, Indels: 34
0.68 0.18 0.13
Matches are distributed among these distances:
27 6 0.03
28 8 0.05
29 55 0.31
30 60 0.34
32 1 0.01
33 18 0.10
34 5 0.03
35 1 0.01
36 21 0.12
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.34
Consensus pattern (29 bp):
AAAGTCTACAACTCCGTGGCACCCCTTTT
Found at i:942075 original size:63 final size:60
Alignment explanation
Indices: 941919--942460 Score: 323
Period size: 63 Copynumber: 8.8 Consensus size: 60
941909 TAAAGTCTAT
* * * * * * *
941919 AACTCCGTGGCACCCTTTTTTT-AAG-CTCACAACTTCGTGGCATCTCTTTTAAAGTCCAT
1 AACTCTGTGGCACCTTTTTTTTAAAGTC-CACAACTCCGTGGCATCTTTTTTTAAGTTCAC
* ** * * *
941978 AATTCCATGGCACCAGCCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTTTTAAGTTCA
1 AACTCTGTGG---CA-CCTTTT-TTTTAAAGTCCACAACTCCGTGGCA-TCTTTTTTTAAGTTCA
942043 C
60 C
* * * * * *
942044 AACTCTGTGGCACCTTTCTCTATTAAAGTCCATAACTCCGCTGGTATCTCTTTTAAAGTTTAC
1 AACTCTGTGGCACCTTT-T-TTTTAAAGTCCACAACTCCG-TGGCATCTTTTTTTAAGTTCAC
* * * * *
942107 AACTTTGTGGCA--TCTCTTTTAAAGTCCACAACTCCGTGGCACCACCATTTTTTTTATGTTCAC
1 AACTCTGTGGCACCTTTTTTTTAAAGTCCACAACTCCGTGG---CATC--TTTTTTTAAGTTCAC
* * * * * *
942170 GACTCCGTGGCACC--TTTTTT-AAGCCCACAACTTCGTGGTATC-TCTTTTAAGTTCAC
1 AACTCTGTGGCACCTTTTTTTTAAAGTCCACAACTCCGTGGCATCTTTTTTTAAGTTCAC
* * * ** * * *
942226 AACTCCGTAGCACC-TTTTTTCAAAGTCCACAACTCTATGGTACCTTTTTCTTCAAAGTCCAC
1 AACTCTGTGGCACCTTTTTTTTAAAGTCCACAACTCCGTGGCATCTTTTT-TT--AAGTTCAC
* * * * *
942288 AACTCTGTGACACCTTTTTCTTAAAGTCCACAACTCCGCGGCATCTTTTTTAAAGTCCAC
1 AACTCTGTGGCACCTTTTTTTTAAAGTCCACAACTCCGTGGCATCTTTTTTTAAGTTCAC
* * * ** * *
942348 AACTTTGTGACACCTTTTTTTTTTCAAAGTCCATAACTTTGTGGCATCTCTTTTAAAG-TCTAC
1 AACTCTGTGGCACC--TTTTTTTT-AAAGTCCACAACTCCGTGGCATCTTTTTTTAAGTTC-AC
**
942411 AACTCCATGGCACCTTTCCTTTTTAAAGTCCACAACTCCGTGGCAT-TTTT
1 AACTCTGTGGCACCTTT--TTTTTAAAGTCCACAACTCCGTGGCATCTTTT
942461 CCCTTTTAAA
Statistics
Matches: 373, Mismatches: 80, Indels: 58
0.73 0.16 0.11
Matches are distributed among these distances:
56 24 0.06
57 5 0.01
58 20 0.05
59 31 0.08
60 23 0.06
61 10 0.03
62 69 0.18
63 147 0.39
64 8 0.02
65 16 0.04
66 20 0.05
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (60 bp):
AACTCTGTGGCACCTTTTTTTTAAAGTCCACAACTCCGTGGCATCTTTTTTTAAGTTCAC
Found at i:942273 original size:56 final size:56
Alignment explanation
Indices: 942158--942267 Score: 141
Period size: 56 Copynumber: 1.9 Consensus size: 56
942148 CCACCATTTT
* * * *
942158 TTTTATGTTCACGACTCCGTGGCACCTTTTTTAAGCCCACAACTTCGTGGTATCTC
1 TTTTAAGTTCACAACTCCGTAGCACCTTTTTTAAGCCCACAACTTCATGGTATCTC
*
942214 TTTTAAGTTCACAACTCCGTAGCACCTTTTTTCAAAGTCCACAAC-TCTATGGTA
1 TTTTAAGTTCACAACTCCGTAGCACCTTTTTT--AAGCCCACAACTTC-ATGGTA
942268 CCTTTTTCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
56 29 0.63
57 2 0.04
58 15 0.33
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (56 bp):
TTTTAAGTTCACAACTCCGTAGCACCTTTTTTAAGCCCACAACTTCATGGTATCTC
Found at i:942281 original size:32 final size:32
Alignment explanation
Indices: 942236--942385 Score: 132
Period size: 32 Copynumber: 4.8 Consensus size: 32
942226 AACTCCGTAG
*
942236 CACC-TTTT-TTCAAAGTCCACAACTCTATGG
1 CACCTTTTTCTTCAAAGTCCACAACTCTATGA
* *
942266 TACCTTTTTCTTCAAAGTCCACAACTCTGTGA
1 CACCTTTTTCTTCAAAGTCCACAACTCTATGA
*** *
942298 CACCTTTTTCTT-AAAGTCCACAACTCCGCGG
1 CACCTTTTTCTTCAAAGTCCACAACTCTATGA
* * *
942329 CATC-TTTT-TT-AAAGTCCACAACTTTGTGA
1 CACCTTTTTCTTCAAAGTCCACAACTCTATGA
* *
942358 CACCTTTTTTTTTTCAAAGTCCATAACT
1 CACC--TTTTTCTTCAAAGTCCACAACT
942386 TTGTGGCATC
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
29 20 0.20
30 7 0.07
31 23 0.23
32 35 0.35
33 2 0.02
34 12 0.12
ACGTcount: A:0.25, C:0.28, G:0.09, T:0.37
Consensus pattern (32 bp):
CACCTTTTTCTTCAAAGTCCACAACTCTATGA
Found at i:942350 original size:92 final size:91
Alignment explanation
Indices: 942211--942448 Score: 237
Period size: 92 Copynumber: 2.5 Consensus size: 91
942201 TTCGTGGTAT
* * * **
942211 CTCTTTT-AAGTTCACAACTCCGTAGCACCTTTTTTCAAAGTCCACAACTCTATGGTACC-TTTT
1 CTCTTTTAAAGTCCACAACTCCGTGGCATCTTTTTT-AAAGTCCACAACTCTATGACACCTTTTT
942274 TCTTCAAAGTCCACAACTCTGTGACAC
65 TCTTCAAAGTCCACAACTCTGTGACAC
* * * *
942301 CTTTTTCTTAAAGTCCACAACTCCGCGGCATCTTTTTTAAAGTCCACAACTTTGTGACACCTTTT
1 C-TCTT-TTAAAGTCCACAACTCCGTGGCATCTTTTTTAAAGTCCACAACTCTATGACACC-TTT
* * * * *
942366 TTTTTTCAAAGTCCATAACTTTGTGGCAT
63 TTTCTTCAAAGTCCACAACTCTGTGACAC
* * *
942395 CTCTTTTAAAGTCTACAACTCCATGGCACCTTTCCTTTTTAAAGTCCACAACTC
1 CTCTTTTAAAGTCCACAACTCCGTGGCA----TCTTTTTTAAAGTCCACAACTC
942449 CGTGGCATTT
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
90 1 0.01
91 3 0.03
92 41 0.34
93 27 0.23
94 27 0.23
96 20 0.17
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.37
Consensus pattern (91 bp):
CTCTTTTAAAGTCCACAACTCCGTGGCATCTTTTTTAAAGTCCACAACTCTATGACACCTTTTTT
CTTCAAAGTCCACAACTCTGTGACAC
Found at i:942364 original size:29 final size:29
Alignment explanation
Indices: 942001--942455 Score: 277
Period size: 29 Copynumber: 14.9 Consensus size: 29
941991 CAGCCTTTTC
*
942001 TTTTT-AAGTCCACGACTCCGTGGCACCCT
1 TTTTTAAAGTCCACAACTCCGTGGCA-CCT
* * *
942030 TTTTTTAAGTTCACAACTCTGTGGCACCTT
1 TTTTTAAAGTCCACAACTCCGTGGCACC-T
* * *
942060 TCTCTATTAAAGTCCATAACTCCGCTGGTATCT
1 T-T-T-TTAAAGTCCACAACTCCG-TGGCACCT
* ** ** *
942093 CTTTTAAAGTTTACAACTTTGTGGCATCT
1 TTTTTAAAGTCCACAACTCCGTGGCACCT
*
942122 CTTTTAAAGTCCACAACTCCGTGGCACCACCATT
1 TTTTTAAAGTCCACAACTCCGTGG---CACC--T
* * * *
942156 TTTTTTATGTTCACGACTCCGTGGCACCT
1 TTTTTAAAGTCCACAACTCCGTGGCACCT
* * * *
942185 TTTTT-AAGCCCACAACTTCGTGGTATCT
1 TTTTTAAAGTCCACAACTCCGTGGCACCT
* * *
942213 CTTTT-AAGTTCACAACTCCGTAGCACCT
1 TTTTTAAAGTCCACAACTCCGTGGCACCT
** *
942241 TTTTTCAAAGTCCACAACTCTATGGTACCTT
1 TTTTT-AAAGTCCACAACTCCGTGGCACC-T
* *
942272 TTTCTTCAAAGTCCACAACTCTGTGACACCTT
1 TTT-TT-AAAGTCCACAACTCCGTGGCACC-T
* *
942304 TTTCTTAAAGTCCACAACTCCGCGGCATCT
1 TTT-TTAAAGTCCACAACTCCGTGGCACCT
** *
942334 TTTTTAAAGTCCACAACTTTGTGACACCTTTTT
1 TTTTTAAAGTCCACAACTCCGTGGCACC----T
* ** *
942367 TTTTTCAAAGTCCATAACTTTGTGGCATCT
1 TTTTT-AAAGTCCACAACTCCGTGGCACCT
* * *
942397 CTTTTAAAGTCTACAACTCCATGGCACCTTT
1 TTTTTAAAGTCCACAACTCCGTGGCACC--T
942428 CCTTTTTAAAGTCCACAACTCCGTGGCA
1 --TTTTTAAAGTCCACAACTCCGTGGCA
942456 TTTTTCCCTT
Statistics
Matches: 331, Mismatches: 71, Indels: 44
0.74 0.16 0.10
Matches are distributed among these distances:
28 41 0.12
29 77 0.23
30 58 0.18
31 30 0.09
32 36 0.11
33 44 0.13
34 45 0.14
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (29 bp):
TTTTTAAAGTCCACAACTCCGTGGCACCT
Found at i:942439 original size:33 final size:33
Alignment explanation
Indices: 942397--942477 Score: 108
Period size: 33 Copynumber: 2.5 Consensus size: 33
942387 TGTGGCATCT
*
942397 CTTTTAAAGTCTACAACTCCATGGCACCTTTCC
1 CTTTTAAAGTCCACAACTCCATGGCACCTTTCC
* * **
942430 TTTTTAAAGTCCACAACTCCGTGGCATTTTTCC
1 CTTTTAAAGTCCACAACTCCATGGCACCTTTCC
*
942463 CTTTTAAAGCCCACA
1 CTTTTAAAGTCCACA
942478 TAAGTCAGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.35
Consensus pattern (33 bp):
CTTTTAAAGTCCACAACTCCATGGCACCTTTCC
Found at i:942504 original size:32 final size:32
Alignment explanation
Indices: 942461--942636 Score: 198
Period size: 32 Copynumber: 5.5 Consensus size: 32
942451 TGGCATTTTT
* *
942461 CCCTTT-TAAAGCCCACATAAGTCAGTGGCAA
1 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
**
942492 CCCTTTCTAAAGCCCACACAAGTTTGTGGCAA
1 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
* *
942524 CCCCTTTCGAAAGCCCACACAAGTCGGTGGTAA
1 -CCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
* * *
942557 CCTTTTCTAAAGCCCACACAAGTCGATAGCAA
1 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
* *
942589 CCTTTTC-AAATGCCCACACAAGTCGGTGGCAT
1 CCCTTTCTAAA-GCCCACACAAGTCGGTGGCAA
942621 CTCCTTT-T-AAGCCCAC
1 C-CCTTTCTAAAGCCCAC
942637 TCTCATTGGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
31 15 0.12
32 77 0.62
33 32 0.26
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (32 bp):
CCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:942589 original size:65 final size:63
Alignment explanation
Indices: 942461--942636 Score: 205
Period size: 65 Copynumber: 2.8 Consensus size: 63
942451 TGGCATTTTT
* * * * *
942461 CCCTTTTAAAGCCCACATAAGTCAGTGGCAACCCTTTCTAAAGCCCACACAAGTTTGTGGCAA
1 CCCTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTTCGTAGCAA
* *
942524 CCCCTTTCGAAAGCCCACACAAGTCGGTGGTAACCTTTTCTAAAGCCCACACAAG-TCGATAGCA
1 -CCCTTTC-AAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTTCG-TAGCA
942588 A
63 A
* *
942589 CCTTTTCAAATGCCCACACAAGTCGGTGGCATCTCCTTT-T-AAGCCCAC
1 CCCTTTCAAA-GCCCACACAAGTCGGTGGCAAC-CCTTTCTAAAGCCCAC
942637 TCTCATTGGC
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
63 11 0.11
64 35 0.36
65 51 0.53
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (63 bp):
CCCTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTTCGTAGCAA
Found at i:942828 original size:52 final size:53
Alignment explanation
Indices: 942639--942831 Score: 211
Period size: 52 Copynumber: 3.7 Consensus size: 53
942629 AAGCCCACTC
* *
942639 TCATTGGCCTTGAATCAGCATATTGGCAC-CTTTTTC-TTTCTCAAGTCCAATA
1 TCATTGGCCTTGAATCAGCACATTGGCACTCTTTCTCATTT-TCAAGTCCAATA
* * *
942691 TCATTGGCCTTGAATCAGCATATTGGCA-TCTTTATCATTCTT-AAGTCCAATG
1 TCATTGGCCTTGAATCAGCACATTGGCACTCTTTCTCATT-TTCAAGTCCAATA
* * * * *
942743 CCGTTGGCCTTGAATCAGTACATTGGCATTC-TTCTCATTTTCAAGTCTAATA
1 TCATTGGCCTTGAATCAGCACATTGGCACTCTTTCTCATTTTCAAGTCCAATA
*
942795 TCACTGG-CTGTGAATCAGCACATTGGCACTC-TTCTCA
1 TCATTGGCCT-TGAATCAGCACATTGGCACTCTTTCTCA
942832 CCCTTATCAT
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
51 4 0.03
52 111 0.92
53 5 0.04
54 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (53 bp):
TCATTGGCCTTGAATCAGCACATTGGCACTCTTTCTCATTTTCAAGTCCAATA
Found at i:942911 original size:59 final size:59
Alignment explanation
Indices: 942839--942956 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
942829 TCACCCTTAT
942839 CATCTTAAAGTTAGATATCGCTAACCTTAAATCAGCATATAAAAACCTTTACTATTTTA
1 CATCTTAAAGTTAGATATCGCTAACCTTAAATCAGCATATAAAAACCTTTACTATTTTA
*
942898 CATCTTAAGGTTAGATATCGCTAACCTTAAATCAGCATATAAAAACCTTTACTATTTTA
1 CATCTTAAAGTTAGATATCGCTAACCTTAAATCAGCATATAAAAACCTTTACTATTTTA
942957 AGCCCAATGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.36
Consensus pattern (59 bp):
CATCTTAAAGTTAGATATCGCTAACCTTAAATCAGCATATAAAAACCTTTACTATTTTA
Found at i:943060 original size:52 final size:50
Alignment explanation
Indices: 942960--943084 Score: 155
Period size: 52 Copynumber: 2.5 Consensus size: 50
942950 TATTTTAAGC
* * *
942960 CCAATGTCGCTAGCCTTGAATC--CATTGGCATTCTTCCCATTTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAACATTGGCATTCTTCCCATCTTCAAGT
**
943008 CCAATGTCGCTGGCCTTGAATCAATACATTGGCATTCTTTTCATCTTCAAGT
1 CCAATGTCGCTGGCCTTGAATC-A-ACATTGGCATTCTTCCCATCTTCAAGT
**
943060 CCAATGTCATTGGCCTTGAATCAAC
1 CCAATGTCGCTGGCCTTGAATCAAC
943085 CTATTAGCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
48 21 0.32
50 2 0.03
51 1 0.02
52 42 0.64
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (50 bp):
CCAATGTCGCTGGCCTTGAATCAACATTGGCATTCTTCCCATCTTCAAGT
Found at i:943324 original size:53 final size:52
Alignment explanation
Indices: 943150--943398 Score: 198
Period size: 53 Copynumber: 4.7 Consensus size: 52
943140 TAGCACTTTC
* * * * *
943150 ATCATTTTTAAGTCCAATGTTGCTGGCCTTGAATCAACACA-TTGGCACCTTCATC
1 ATCATCTTTAAGTCCAATG-CGCTGGCCTTGAATCAGCATATTTGGCA--TTC-TT
* * * * *
943205 ATCATCTTTAAGACCAGTAT-CACTGGCCTTGAATCAGCATCTTT-GAATTTTT
1 ATCATCTTTAAGTCCA--ATGCGCTGGCCTTGAATCAGCATATTTGGCATTCTT
* * *
943257 ATCGTCTTTAAGTCCAATGCCGTTGGCCTTGAATTAGCATATTTGGCATTCTT
1 ATCATCTTTAAGTCCAATG-CGCTGGCCTTGAATCAGCATATTTGGCATTCTT
* * * * **
943310 ATCATCTTTAAGTCCAATAGTGCTGACCTTAAATCGGCCCATTTGGCATTCTT
1 ATCATCTTTAAGTCCAAT-GCGCTGGCCTTGAATCAGCATATTTGGCATTCTT
* * *
943363 ACCATCTTTAAGTCCAATGTCACTGGCCTTAAATCA
1 ATCATCTTTAAGTCCAATG-CGCTGGCCTTGAATCA
943399 ACACATTGGT
Statistics
Matches: 154, Mismatches: 32, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
50 2 0.01
52 36 0.23
53 79 0.51
54 1 0.01
55 32 0.21
56 2 0.01
57 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (52 bp):
ATCATCTTTAAGTCCAATGCGCTGGCCTTGAATCAGCATATTTGGCATTCTT
Found at i:953710 original size:19 final size:20
Alignment explanation
Indices: 953671--953710 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
953661 ACAACACTTA
953671 TGTATCGATACAATTATTGTT
1 TGTATCGATACAA-TATTGTT
953692 TGTATCGATACAA-ATTGTT
1 TGTATCGATACAATATTGTT
953711 GAAATTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
21 13 0.68
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TGTATCGATACAATATTGTT
Found at i:955669 original size:28 final size:27
Alignment explanation
Indices: 955614--955672 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
955604 AATAAGAAAC
*
955614 AAAAAATGAAAAATAAAAAAGAATAAG
1 AAAAAATGAAAAATAAAAAAGAAAAAG
955641 AAAAAATGTAAAAA-AACGAAAA-AAAAAG
1 AAAAAATG-AAAAATAA--AAAAGAAAAAG
955669 AAAA
1 AAAA
955673 GAAAATGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 10 0.36
28 14 0.50
29 4 0.14
ACGTcount: A:0.80, C:0.02, G:0.10, T:0.08
Consensus pattern (27 bp):
AAAAAATGAAAAATAAAAAAGAAAAAG
Found at i:955945 original size:16 final size:16
Alignment explanation
Indices: 955926--955956 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
955916 ATGAAATGAA
955926 GAAAAAAAGAAAAAGT
1 GAAAAAAAGAAAAAGT
*
955942 GAAAAAAAGGAAAAG
1 GAAAAAAAGAAAAAG
955957 AATGAAGCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (16 bp):
GAAAAAAAGAAAAAGT
Found at i:956401 original size:112 final size:114
Alignment explanation
Indices: 956235--956473 Score: 304
Period size: 112 Copynumber: 2.1 Consensus size: 114
956225 TTAAAAGAAT
* * *
956235 TCATATTTTATACAATCTGATCCATTTGTGCCTAGGAAAATAGGGTATGTATCCTATC-AGTTTT
1 TCATATTTTATACAATCTGATCCATTCGTGCCTAGAAAAATAGGGCATGTATCCTATCAAGTTTT
*
956299 GAAAA-TTTTGAAATAACAACATAAAATTTGTCTAATTTAAAAAAAAAC
66 GAAAATTTTTGAAACAACAACATAAAATTTGTCTAATTTAAAAAAAAAC
* * *
956347 TCATATTTTATATAA-CTTGATCCATTCGTGCCTAGAAAAATGGGGCATGTATCCTATCAATTTT
1 TCATATTTTATACAATC-TGATCCATTCGTGCCTAGAAAAATAGGGCATGTATCCTATCAAGTTT
* ** * * ** *
956411 TGAAAATTTTTGAGACAACAGTATTAAATTTGTCTGATTTTCAAAAAAAT
65 TGAAAATTTTTGAAACAACAACATAAAATTTGTCTAATTTAAAAAAAAAC
*
956461 TCATATTTCATAC
1 TCATATTTTATAC
956474 TTCTTGAACT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
111 1 0.01
112 51 0.48
113 10 0.09
114 45 0.42
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (114 bp):
TCATATTTTATACAATCTGATCCATTCGTGCCTAGAAAAATAGGGCATGTATCCTATCAAGTTTT
GAAAATTTTTGAAACAACAACATAAAATTTGTCTAATTTAAAAAAAAAC
Found at i:956495 original size:114 final size:111
Alignment explanation
Indices: 956204--956533 Score: 313
Period size: 114 Copynumber: 2.9 Consensus size: 111
956194 GACTTGAAAG
* * * * *
956204 AACATCAAATTTGTTTGATTTTTAAAAGAATTCATATTTTATACAATC-TGATCCATTTGTGCCT
1 AACATAAAATTTGTCTGATTTTAAAAAAAATTCATATTTTATAC-TTCTTGATCCA-TTGTGCCT
* * *
956268 AGGAAAATAGGGTATGTATCCTATCAGTTTTGAAAATTTTGAAATAAC
64 AGGAAAATGGGGCATGTATCCTATCAGTTTTGAAAATTTTGAAACAAC
* * * *
956316 AACATAAAATTTGTCTAATTTAAAAAAAAACTCATATTTTATA-TAACTTGATCCATTCGTGCCT
1 AACATAAAATTTGTCTGATTTTAAAAAAAATTCATATTTTATACT-TCTTGATCCATT-GTGCCT
* * *
956380 AGAAAAATGGGGCATGTATCCTATCAATTTTTGAAAATTTTTGAGACAAC
64 AGGAAAATGGGGCATGTATCCTATC-AGTTTTGAAAA-TTTTGAAACAAC
** * * * * * *
956430 AGTATTAAATTTGTCTGATTTTCAAAAAAATTCATATTTCATACTTCTTGAACTAGTTGTACCTA
1 AACATAAAATTTGTCTGATTTTAAAAAAAATTCATATTTTATACTTCTTGATCCA-TTGTGCCTA
* * * * * * *
956495 GGGAAATGGTGCATGCATCCTGTTAGTTCTGAAATTTTT
65 GGAAAATGGGGCATGTATCCTATCAGTTTTGAAAATTTT
956534 TAGCTAACCA
Statistics
Matches: 175, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
111 3 0.02
112 75 0.43
113 18 0.10
114 76 0.43
115 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (111 bp):
AACATAAAATTTGTCTGATTTTAAAAAAAATTCATATTTTATACTTCTTGATCCATTGTGCCTAG
GAAAATGGGGCATGTATCCTATCAGTTTTGAAAATTTTGAAACAAC
Found at i:957435 original size:92 final size:92
Alignment explanation
Indices: 957321--958003 Score: 789
Period size: 92 Copynumber: 7.7 Consensus size: 92
957311 AGAAGATTCA
*
957321 GACCACACATTTCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
*
957386 CTAATTTCCTTGGGGCAAGGATATCCC
66 CTGATTTCCTTGGGGCAAGGATATCCC
* * * * * *
957413 GACCACACAATCCCAATTATATCCCTTTCATCCAACCATTGGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
* * *
957478 CTGATTT--TT-----AAGG--GTGCA
66 CTGATTTCCTTGGGGCAAGGATATCCC
*
957496 GACCACACATTCCCAATTATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
957561 CTGATTTCCTTGGGGCAA-GATATCCC
66 CTGATTTCCTTGGGGCAAGGATATCCC
* * * * * *
957587 GACCACACATTCCTAATCATATCCCCTTTACCCAGCCACTAGATGGTATTGA--CATCACAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
*
957650 CTAATTTCCTTGGGGCAAGGATATCCC
66 CTGATTTCCTTGGGGCAAGGATATCCC
* * * * *
957677 GACCACACAATCCTAATTATATCCCTTTCATCTAACCATTAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
* * *
957742 CTGATTT--TT-----AAGG--GTGCA
66 CTGATTTCCTTGGGGCAAGGATATCCC
*
957760 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
*
957825 CTGATTTCCTTAGGGCAA-GATATCCC
66 CTGATTTCCTTGGGGCAAGGATATCCC
* * * * *
957851 GACCACACATTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
* * *
957916 TTGATTTCCTTAGGGCAAGGATATCTC
66 CTGATTTCCTTGGGGCAAGGATATCCC
* * * ** * * * **
957943 GACCACTCAATCCTAATCATATCCTTTTCTTTTAGCCTCTAGATGGTATTGATGCATCACA
1 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACA
958004 TGACCACAAA
Statistics
Matches: 504, Mismatches: 65, Indels: 44
0.82 0.11 0.07
Matches are distributed among these distances:
83 137 0.27
85 12 0.02
89 30 0.06
90 60 0.12
91 125 0.25
92 140 0.28
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (92 bp):
GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
CTGATTTCCTTGGGGCAAGGATATCCC
Found at i:957552 original size:83 final size:84
Alignment explanation
Indices: 957409--957923 Score: 498
Period size: 83 Copynumber: 5.9 Consensus size: 84
957399 GGCAAGGATA
* * * * *
957409 TCCCGACCACACAATCCCAATTATATCCCTTTCATCCAACCATTGGATGGTATTGATGCATCACA
1 TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATCACA
957474 AAGCCTGATTT-TTAAGGG
66 AAGCCTGATTTCTTAAGGG
* * * *
957492 TGCAGACCACACATTCCCAATTATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACA
1 TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATCACA
**
957557 AAGCCTGATTTCCTTGGGGCAAGATA
66 AAGCCTGATTT-CTT-----AAG-GG
* * * * *
957583 TCCCGACCACACATTCCTAATCATATCCCCTTTACCCAGCCACTAGATGGTATTGA--CATCACA
1 TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATCACA
* *
957646 AAGCCTAATTTCCTTGGGGCAAGGATA
66 AAGCCTGATTT-CTT-----AAGG--G
* * * * * *
957673 TCCCGACCACACAATCCTAATTATATCCCTTTCATCTAACCATTAGATGGTATTGATGCATCACA
1 TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATCACA
957738 AAGCCTGATTT-TTAAGGG
66 AAGCCTGATTTCTTAAGGG
* * * *
957756 TGCAGACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAA
1 TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATCACA
*
957821 AAGCCTGATTTCCTTAGGGCAAG
66 AAGCCTGATTT-CTTAAGG---G
* * * *
957844 ATATCCCGACCACACATTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATGCATC
1 ---TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATC
*
957909 ACAAAGCTTGATTTC
63 ACAAAGCCTGATTTC
957924 CTTAGGGCAA
Statistics
Matches: 364, Mismatches: 48, Indels: 33
0.82 0.11 0.07
Matches are distributed among these distances:
83 137 0.38
85 11 0.03
88 1 0.00
89 29 0.08
90 55 0.15
91 114 0.31
92 17 0.05
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (84 bp):
TCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATGGTATTGATGCATCACA
AAGCCTGATTTCTTAAGGG
Found at i:957793 original size:264 final size:265
Alignment explanation
Indices: 957321--958003 Score: 1111
Period size: 264 Copynumber: 2.6 Consensus size: 265
957311 AGAAGATTCA
* * *
957321 GACCACACATTTCC-AATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAG
1 GACCACACA-TTCCTAATCATATCCCCTTTATCCAACCACTAGATGGTATTGA-GCATCACAAAG
* *
957385 CCTAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCCAATTATATCCCTTTCATCCAACC
64 CCTAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCTAATTATATCCCTTTCATCTAACC
* *
957450 ATTGGATGGTATTGATGCATCACAAAGCCTGATTTTTAAGGGTGCAGACCACACATTCCCAATTA
129 ATTAGATGGTATTGATGCATCACAAAGCCTGATTTTTAAGGGTGCAGACCACACATTCCCAATCA
* *
957515 TATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGCCTGATTTCCTTGGGGCAAG
194 TATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAAAAGCCTGATTTCCTTAGGGCAAG
957580 ATATCCC
259 ATATCCC
* *
957587 GACCACACATTCCTAATCATATCCCCTTTACCCAGCCACTAGATGGTATTGA-CATCACAAAGCC
1 GACCACACATTCCTAATCATATCCCCTTTATCCAACCACTAGATGGTATTGAGCATCACAAAGCC
957651 TAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCTAATTATATCCCTTTCATCTAACCAT
66 TAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCTAATTATATCCCTTTCATCTAACCAT
957716 TAGATGGTATTGATGCATCACAAAGCCTGATTTTTAAGGGTGCAGACCACACATTCCCAATCATA
131 TAGATGGTATTGATGCATCACAAAGCCTGATTTTTAAGGGTGCAGACCACACATTCCCAATCATA
957781 TCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAAAAGCCTGATTTCCTTAGGGCAAGAT
196 TCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAAAAGCCTGATTTCCTTAGGGCAAGAT
957846 ATCCC
261 ATCCC
*
957851 GACCACACATTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCTAATCATATCCCCTTTATCCAACCACTAGATGGTATTGA-GCATCACAAAGC
* * * * * * * * * *
957916 TTGATTTCCTTAGGGCAAGGATATCTCGACCACTCAATCCTAATCATATCCTTTTCTTTTAGCC-
65 CTAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCTAATTATATCCCTTTCATCTAACCA
957980 TCTAGATGGTATTGATGCATCACA
130 T-TAGATGGTATTGATGCATCACA
958004 TGACCACAAA
Statistics
Matches: 389, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
264 255 0.66
265 5 0.01
266 129 0.33
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (265 bp):
GACCACACATTCCTAATCATATCCCCTTTATCCAACCACTAGATGGTATTGAGCATCACAAAGCC
TAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCTAATTATATCCCTTTCATCTAACCAT
TAGATGGTATTGATGCATCACAAAGCCTGATTTTTAAGGGTGCAGACCACACATTCCCAATCATA
TCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAAAAGCCTGATTTCCTTAGGGCAAGAT
ATCCC
Found at i:957896 original size:174 final size:176
Alignment explanation
Indices: 957321--957923 Score: 683
Period size: 174 Copynumber: 3.4 Consensus size: 176
957311 AGAAGATTCA
957321 GACCACACATTTCC-AATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAG
1 GACCACACA-TTCCTAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAG
* * * *
957385 CCTAATTTCCTTGGGGCAAGGATATCCCGACCACACAATCCCAATTATATCCCTTTCATCCAACC
65 CCTGATTT-CTT---G-AAGG--ATCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACC
* * * * *
957450 ATTGGATGGTATTGATGCATCACAAAGCCTGATTT--TTAAGG---G---TGCA
123 AATAGATGGTATTGATGCATCACAAAGCCTGATTTCCTTAGGGCAAGATATCCC
* *
957496 GACCACACATTCCCAATTATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCTAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
* * * * * *
957561 CTGATTTCCTTGGGGCAAGATATCCCGACCACACATTCCTAATCATATCCCCTTTACCCAGCCAC
66 CTGATTT-CTT---G-AAG-GATCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAA
* *
957626 TAGATGGTATTGA--CATCACAAAGCCTAATTTCCTTGGGGCAAGGATATCCC
125 TAGATGGTATTGATGCATCACAAAGCCTGATTTCCTTAGGGCAA-GATATCCC
* * * *
957677 GACCACACAATCCTAATTATATCCCTTTCATCTAACCATTAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCTAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
* * * *
957742 CTGATTT-TT-AAGGGTGCAGACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATG
66 CTGATTTCTTGAAGGATCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATG
*
957805 GTATTGATGCATCAAAAAGCCTGATTTCCTTAGGGCAAGATATCCC
131 GTATTGATGCATCACAAAGCCTGATTTCCTTAGGGCAAGATATCCC
* * * *
957851 GACCACACATTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCTAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
*
957916 TTGATTTC
66 CTGATTTC
957924 CTTAGGGCAA
Statistics
Matches: 374, Mismatches: 40, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
172 17 0.05
173 48 0.13
174 133 0.36
175 103 0.28
178 1 0.00
179 2 0.01
181 70 0.19
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (176 bp):
GACCACACATTCCTAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCACAAAGC
CTGATTTCTTGAAGGATCCCGACCACACATTCCCAATCATATCCCCTTCATCCAACCAATAGATG
GTATTGATGCATCACAAAGCCTGATTTCCTTAGGGCAAGATATCCC
Found at i:957915 original size:91 final size:92
Alignment explanation
Indices: 957760--958003 Score: 339
Period size: 91 Copynumber: 2.7 Consensus size: 92
957750 TAAGGGTGCA
* * * * *
957760 GACCACACATTCCCAATCATATCCCCTTCATCTAACCAATAGATGGTATTGATGCATCAAAAAGC
1 GACCACACATTCCTAATCATATCCCTTTTATCTAACCACTAGATGGTATTGATGCATCACAAAGC
957825 CTGATTTCCTTAGGGCAA-GATATCCC
66 CTGATTTCCTTAGGGCAAGGATATCCC
*
957851 GACCACACATTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGC
1 GACCACACATTCCTAATCATATCCCTTTTATCTAACCACTAGATGGTATTGATGCATCACAAAGC
* *
957916 TTGATTTCCTTAGGGCAAGGATATCTC
66 CTGATTTCCTTAGGGCAAGGATATCCC
* * * * * *
957943 GACCACTCAATCCTAATCATAT-CCTTTTCTTTTAGCCTCTAGATGGTATTGATGCATCACA
1 GACCACACATTCCTAATCATATCCCTTTT-ATCTAACCACTAGATGGTATTGATGCATCACA
958004 TGACCACAAA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
91 82 0.60
92 54 0.40
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (92 bp):
GACCACACATTCCTAATCATATCCCTTTTATCTAACCACTAGATGGTATTGATGCATCACAAAGC
CTGATTTCCTTAGGGCAAGGATATCCC
Found at i:958562 original size:46 final size:45
Alignment explanation
Indices: 958510--960290 Score: 540
Period size: 46 Copynumber: 38.8 Consensus size: 45
958500 TTTACTATCG
* *
958510 TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCA
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTTATTTCTCA
* * *
958556 TTTGACGTGATGGTTTT-CACTTTGGTCAAACT-TATTTTAATTC-CA
1 TTTGACGTGATGGTTTTGC-C-CTAGTCAAACTCT-TTTTATTTCTCA
* * * ** * * *
958601 TTTAACATGATAGTTCTCACCCTGGTCAAACTCTTTTTCTTTCCCA
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTTATTTCTCA
* * *
958647 TTTGACATGATGGTTTTCGTCC-AGGTCAAACT-TTATTTGA-TACGTCA
1 TTTGACGTGATGGTTTT-GCCCTA-GTCAAACTCTT-TTT-ATTTC-TCA
* * * * *
958694 TTTGACGTGATGGTTCTTG-CCTTGGCTAATCTCTTTTTTTTTTCTCG
1 TTTGACGTGATGGTT-TTGCCCTAGTC-AAACTC-TTTTTATTTCTCA
** * * * *
958741 TTTGACAAGATGGTTTTCTCCCTAATCAAACACTTTTTATATTC-CG
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCTTTTTAT-TTCTCA
* * ** * * * ** *
958787 TTTAACATGATGGTTCTCACCCTTGTCAAACTCCTTTGATACCTTA
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTTATTTCTCA
* * * * *
958833 TTTGACGTGATGGTTCT-CAACTTGGTCAAACTCTATTTCTTTCTCA
1 TTTGACGTGATGGTTTTGC--CCTAGTCAAACTCTTTTTATTTCTCA
* * *
958879 TTTGACATAATGGTTTTAGCCCTAGTCAAACTTCTTTTCTA-TT-TCG
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAAC-TCTTTT-TATTTCTCA
* * *
958925 TTTGATGTGATGGTTCT-CATCCTGGTCAAACTCTTCTTT-TTTCTCA
1 TTTGACGTGATGGTTTTGC--CCTAGTCAAACTCTT-TTTATTTCTCA
* * * * *
958971 TTTAACATGATGGTTTT-CACCGTGGTTAAACCTCTTTTATATTT-T-G
1 TTTGACGTGATGGTTTTGC-CC-TAGTCAAA-CTCTTTT-TATTTCTCA
* * * * * *
959017 TTTAATGTGATGGTTTT-CATCATGGTTAAACCTCTTTTATATTT-T-G
1 TTTGACGTGATGGTTTTGC--CCTAGTCAAA-CTCTTTT-TATTTCTCA
* * * * * * ** *
959063 TTTAATGTGATAGTTAT-CACCTTGGTCAAACTCTTTTGATACCTCG
1 TTTGACGTGATGGTTTTGC-CC-TAGTCAAACTCTTTTTATTTCTCA
* * * **
959109 TTTAACATGATGGTTCTTACCCTAGTCAAACTCTTTTT-TATTCTTG
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTTAT-TTCTCA
* * *
959155 TTTGACGTGATGATTTTCTCCCTAATCAAACT-TCTTTTATATT-TCA
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCT-TTTTAT-TTCTCA
* * * * * **
959201 TTTGATGTCATAGTTTCAGCCCTAGTCAAACTCTTTTTTCTTTCTTG
1 TTTGACGTGATGGTTT-TGCCCTAGTCAAACTC-TTTTTATTTCTCA
* * *
959248 TTTGACATGATGGTTTT-CACCTTGATCAAA-TTTCTTTTATATTC-CA
1 TTTGACGTGATGGTTTTGC-CCTAG-TCAAACTCT-TTTTAT-TTCTCA
* * * * *
959294 TTTGACATAATGGTTCT-CACCTTGATCAAACTCATTTT-TTTCTCA
1 TTTGACGTGATGGTTTTGC-CCTAG-TCAAACTCTTTTTATTTCTCA
*
959339 TTTGACGTGATGGTTTTCACCCTGAG-CAAACT-TCTTTTATATT-TCA
1 TTTGACGTGATGGTTTT-GCCCT-AGTCAAACTCT-TTTTAT-TTCTCA
* * * * * ** *
959385 TTTGATGGGATGGTTCTCGCCTTATTCAAACT-TTTTTGATGCCTCG
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTT-ATTTCTCA
* * ** * ** **
959431 TTTGATGTAATGGTTTTTATCATAGTTGAACTCTTTTT-TTT-TTG
1 TTTGACGTGATGG-TTTTGCCCTAGTCAAACTCTTTTTATTTCTCA
* * * * * *
959475 TTTGACATGATGATTTTTGCCTTGGTCAAACTTTTTTTATATTC-CT
1 TTTGACGTGATG-GTTTTGCCCTAGTCAAACTCTTTTTAT-TTCTCA
* * * * *
959521 TTTTATGTGATGGTTCTT-CCCTAGTCAAAACTCCTTTTCTTTCTTA
1 TTTGACGTGATGGTT-TTGCCCTAGTC-AAACTCTTTTTATTTCTCA
* * * * *
959567 TTTAACATGATAGTTTTCGCCCTAATCAAACT-TCTTTTACATTCT-A
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCT-TTTTA-TTTCTCA
* ** **
959613 TTTGACGCGATGGTTCTTGCCCTAGTCAAACT-TTTTTGATACCTTG
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTT-ATTTCTCA
** * *
959659 TTTGAC-AAATGGTTCTTGCCCTAGTCAAACTCATTTT-TTTCTCG
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTTATTTCTCA
* * *
959703 TTTAACCTGATGGTTTT-CATCCTGGTCAAACT-TCTTTTATATTC-CA
1 TTTGACGTGATGGTTTTGC--CCTAGTCAAACTCT-TTTTAT-TTCTCA
* * * *
959749 TTTGACGTAATGGTTCTTG-CCTTGATCAAACTCTTTTTCTTTCTGA
1 TTTGACGTGATGGTT-TTGCCCTAG-TCAAACTCTTTTTATTTCTCA
* * * * *
959795 TTTAACGTAATAGTTTTCTCCCTGGTCAAAC-CTCTTTTACTTTCTC-
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCT-TTTTA-TTTCTCA
* * * * * ** * **
959841 TTTGAAGTGATTGTTTTCACCCTGGCCAAACTCCATTGATACCTCA
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCTTTTTATTTCTCA
* ** * * *
959887 TTTGACATGATGGTTCTCT-CTTTAGTCAAATTCATTTTCTTTCTCA
1 TTTGACGTGATGGTT-T-TGCCCTAGTCAAACTCTTTTTATTTCTCA
* * * * * *
959933 TCTAACATTATGGTTTTCGCCTTGGTCAAACT-TCTTTTATATTC-CA
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCT-TTTTAT-TTCTCA
* * * *
959979 TTTGATGTAATGGTTCTCGCCCTAGTCAAACTTCTTTTATATTT-T-G
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAAC-TCTTTT-TATTTCTCA
* * * * * **
960025 TTTGACGTGTTGGTTTTCACCCTAGTCAAACTCGTGTGATACCTCA
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCTTTTTATTTCTCA
* * * * **
960071 TTTGACATGATGGTTTTCGCTCTAGTCAAACTCATTTTCTTTCTTG
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCTTTTTATTTCTCA
* * * * *
960117 TTTGACTTGATGGTTTTCACCCTAATCAAACTTTTTTTATATT-TCG
1 TTTGACGTGATGGTTTT-GCCCTAGTCAAACTCTTTTTAT-TTCTCA
* * * * * * *
960163 TTTGACGTGATAGTTCATGCCATGGTCAAACTCCTTTTCTTTCTTA
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTTTATTTCTCA
* * *
960209 TTTGACGTGATGATTTTGCCCTAATCAAACT-TCTTTCATATT-TCA
1 TTTGACGTGATGGTTTTGCCCTAGTCAAACTCT-TTTTAT-TTCTCA
* * *
960254 TTTGACATGATGGTTCTCGCCCTAGTCAAGCTCTTTT
1 TTTGACGTGATGGTT-TTGCCCTAGTCAAACTCTTTT
960291 GATATTTTTT
Statistics
Matches: 1287, Mismatches: 325, Indels: 246
0.69 0.17 0.13
Matches are distributed among these distances:
43 1 0.00
44 50 0.04
45 215 0.17
46 846 0.66
47 150 0.12
48 23 0.02
49 2 0.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (45 bp):
TTTGACGTGATGGTTTTGCCCTAGTCAAACTCTTTTTATTTCTCA
Found at i:958838 original size:186 final size:184
Alignment explanation
Indices: 958510--958847 Score: 421
Period size: 186 Copynumber: 1.8 Consensus size: 184
958500 TTTACTATCG
**
958510 TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCATTTGACGTGATGGTTTTCA
1 TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCATTTGACAAGATGGTTTTCA
** ** * *
958575 CTTTGGTCAAACTTATTTTAATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTTTTTC
66 CCCTAATCAAACCTATTTTAATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTCTTTC
* *
958640 TTTCCCATTTGACATGATGGTTTTCGTCCAGGTCAAACTTTATTTGATACGTCA
131 ATACCCATTTGACATGATGGTTTTCGTCCAGGTCAAACTTTATTTGATACGTCA
* * * *
958694 TTTGACGTGATGGTTCTTGCCTT-GGCTAATCTCTTTTTTTTTTCTCGTTTGACAAGATGGTTTT
1 TTTGACGTGATGGTTCTTGCCTTAGTC-AAACTC-TTTTTCTTTCTCATTTGACAAGATGGTTTT
* * * *
958758 CTCCCTAATCAAACACT-TTTTATATTCCGTTTAACATGATGGTTCTCACCCTTGTCAAACTC-C
64 CACCCTAATCAAAC-CTATTTTA-ATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTC
* * *
958821 TTTGATACCTTATTTGACGTGATGGTT
127 TTTCATACC-CATTTGACATGATGGTT
958848 CTCAACTTGG
Statistics
Matches: 128, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
183 2 0.02
184 28 0.22
185 46 0.36
186 52 0.41
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (184 bp):
TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCATTTGACAAGATGGTTTTCA
CCCTAATCAAACCTATTTTAATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTCTTTC
ATACCCATTTGACATGATGGTTTTCGTCCAGGTCAAACTTTATTTGATACGTCA
Found at i:958862 original size:186 final size:184
Alignment explanation
Indices: 958510--958916 Score: 419
Period size: 186 Copynumber: 2.2 Consensus size: 184
958500 TTTACTATCG
**
958510 TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCATTTGACGTGATGGTTTTCA
1 TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCATTTGACAAGATGGTTTTCA
** ** * *
958575 CTTTGGTCAAACTTATTTTAATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTTTTTC
66 CCCTAATCAAACCTATTTTAATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTCTTTC
* * * ** *
958640 TTTCCCATTTGACATGATGGTTTTCGTCCAGGTCAAACTTTATTTGATACGTCA
131 ATACCCATTTGACATGATGGTTCTCAACCAGGTCAAACTCTATTTGATACGTCA
* * * *
958694 TTTGACGTGATGGTTCTTGCCTT-GGCTAATCTCTTTTTTTTTTCTCGTTTGACAAGATGGTTTT
1 TTTGACGTGATGGTTCTTGCCTTAGTC-AAACTC-TTTTTCTTTCTCATTTGACAAGATGGTTTT
* * * *
958758 CTCCCTAATCAAACACT-TTTTATATTCCGTTTAACATGATGGTTCTCACCCTTGTCAAACTC-C
64 CACCCTAATCAAAC-CTATTTTA-ATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTC
* * * ** ** *
958821 TTTGATACCTTATTTGACGTGATGGTTCTCAACTTGGTCAAACTCTATTTCTTTC-TCA
127 TTTCATACC-CATTTGACATGATGGTTCTCAACCAGGTCAAACTCTATTTGATACGTCA
* * *
958879 TTTGACATAATGGTT-TTAGCCCTAGTCAAACTTCTTTT
1 TTTGACGTGATGGTTCTT-GCCTTAGTCAAAC-TCTTTT
958917 CTATTTCGTT
Statistics
Matches: 180, Mismatches: 35, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
183 2 0.01
184 30 0.17
185 73 0.41
186 75 0.42
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.44
Consensus pattern (184 bp):
TTTGACGTGATGGTTCTTGCCTTAGTCAAACTCTTTTTCTTTCTCATTTGACAAGATGGTTTTCA
CCCTAATCAAACCTATTTTAATTCCATTTAACATGATAGTTCTCACCCTGGTCAAACTCTCTTTC
ATACCCATTTGACATGATGGTTCTCAACCAGGTCAAACTCTATTTGATACGTCA
Found at i:959648 original size:136 final size:137
Alignment explanation
Indices: 959530--959786 Score: 331
Period size: 136 Copynumber: 1.9 Consensus size: 137
959520 TTTTTATGTG
* * *
959530 ATGGTTCTT-CCCTAGTCAAAACTCCTTTTCTTTCTTATTTAACATGATAGTTTTCGCCCTAATC
1 ATGGTTCTTGCCCTAGTC-AAACTCATTTT-TTTCTCATTTAACATGATAGTTTTCACCCTAATC
* *
959594 AAACTTCTTTTACATTCTATTTGACGCGATGGTTCTTGCCCTAGTCAAAC-TTTTTTGATACCTT
64 AAACTTCTTTTACATTCCATTTGACGCAATGGTTCTTGCCCTAGTCAAACTTTTTTTGATACCTT
959658 GTTTGACAA
129 GTTTGACAA
* * * * **
959667 ATGGTTCTTGCCCTAGTCAAACTCATTTTTTTCTCGTTTAACCTGATGGTTTTCATCCTGGTCAA
1 ATGGTTCTTGCCCTAGTCAAACTCATTTTTTTCTCATTTAACATGATAGTTTTCACCCTAATCAA
* * * *
959732 ACTTCTTTTATATTCCATTTGACGTAATGGTTCTTG-CCTTGATCAAACTCTTTTT
66 ACTTCTTTTACATTCCATTTGACGCAATGGTTCTTGCCCTAG-TCAAACTTTTTTT
959787 CTTTCTGATT
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
135 4 0.04
136 66 0.65
137 24 0.24
138 8 0.08
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.44
Consensus pattern (137 bp):
ATGGTTCTTGCCCTAGTCAAACTCATTTTTTTCTCATTTAACATGATAGTTTTCACCCTAATCAA
ACTTCTTTTACATTCCATTTGACGCAATGGTTCTTGCCCTAGTCAAACTTTTTTTGATACCTTGT
TTGACAA
Found at i:959649 original size:228 final size:227
Alignment explanation
Indices: 959223--959995 Score: 707
Period size: 228 Copynumber: 3.4 Consensus size: 227
959213 GTTTCAGCCC
* * *
959223 TAGTCAAACTCTTTTTTCTTTCTTGTTTGACATGATGGTTTTCACCTTGATCAAA-TTTCTTTTA
1 TAGTCAAACTCATTTTT-TTT-TTGTTTGACATGATGGTTTT-TCCTTGGTCAAACTTT-TTTTA
* *
959287 TATTCCATTTGACATAATGGTTC-TCACCTTGATCAAACTCATTTT-TTTCTCATTTGACGTGAT
62 TATTCCATTTGACGTAATGGTTCTTC-CCTTGATCAAACTCATTTTCTTTCTCATTTAACGTGAT
* * * * * * *
959350 GGTTTTCACCCTGAGCAAACTTCTTTTATATT-TCATTTGATGGGATGGTTCTCGCCTTATTCAA
126 AGTTTTCACCCTGATCAAACTTCTTTTACATTCT-ATTTGACGCGATGGTTCTCGCCCTAGTCAA
* ** * *
959414 ACTTTTTTGATGCCTCGTTTGATGTAATGGTTTTTATCA
190 ACTTTTTTGATACCTCGTTTGA-CAAATGGTTCTTACCA
** *
959453 TAGTTGAACTC-TTTTTTTTTTGTTTGACATGATGATTTTTGCCTTGGTCAAACTTTTTTTATAT
1 TAGTCAAACTCATTTTTTTTTTGTTTGACATGATGGTTTTT-CCTTGGTCAAACTTTTTTTATAT
* * * * * * * *
959517 TCCTTTTTATGTGATGGTTCTTCCCTAG-TCAAAACTCCTTTTCTTTCTTATTTAACATGATAGT
65 TCCATTTGACGTAATGGTTCTTCCCTTGATC-AAACTCATTTTCTTTCTCATTTAACGTGATAGT
* * *
959581 TTTCGCCCTAATCAAACTTCTTTTACATTCTATTTGACGCGATGGTTCTTGCCCTAGTCAAACTT
129 TTTCACCCTGATCAAACTTCTTTTACATTCTATTTGACGCGATGGTTCTCGCCCTAGTCAAACTT
* * *
959646 TTTTGATACCTTGTTTGACAAATGGTTCTTGCCC
194 TTTTGATACCTCGTTTGACAAATGGTTCTTACCA
* * * * *
959680 TAGTCAAACTCATTTTTTTCTCGTTTAACCTGATGGTTTTCATCC-TGGTCAAACTTCTTTTATA
1 TAGTCAAACTCATTTTTTTTTTGTTTGACATGATGGTTTT--TCCTTGGTCAAACTTTTTTTATA
* * * *
959744 TTCCATTTGACGTAATGGTTCTTGCCTTGATCAAACTCTTTTTCTTTCTGATTTAACGTAATAGT
64 TTCCATTTGACGTAATGGTTCTTCCCTTGATCAAACTCATTTTCTTTCTCATTTAACGTGATAGT
* * * * * * * * * * * * *
959809 TTTCTCCCTGGTCAAACCTCTTTTACTTTCTCTTTGAAGTGATTGTTTTCACCCTGGCCAAACTC
129 TTTCACCCTGATCAAACTTCTTTTACATTCTATTTGACGCGATGGTTCTCGCCCTAGTCAAACTT
** * * **
959874 CATTGATACCTCATTTGACATGATGGTTCTCT-CTT
194 TTTTGATACCTCGTTTGACA-AATGGTTCT-TACCA
* * ** * * * * *
959909 TAGTCAAATTCATTTTCTTTCTCATCTAACATTATGGTTTTCGCCTTGGTCAAACTTCTTTTATA
1 TAGTCAAACTCATTTT-TTTTTTGTTTGACATGATGGTTTT-TCCTTGGTCAAACTTTTTTTATA
*
959974 TTCCATTTGATGTAATGGTTCT
64 TTCCATTTGACGTAATGGTTCT
959996 CGCCCTAGTC
Statistics
Matches: 448, Mismatches: 81, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
226 2 0.00
227 85 0.19
228 254 0.57
229 36 0.08
230 71 0.16
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (227 bp):
TAGTCAAACTCATTTTTTTTTTGTTTGACATGATGGTTTTTCCTTGGTCAAACTTTTTTTATATT
CCATTTGACGTAATGGTTCTTCCCTTGATCAAACTCATTTTCTTTCTCATTTAACGTGATAGTTT
TCACCCTGATCAAACTTCTTTTACATTCTATTTGACGCGATGGTTCTCGCCCTAGTCAAACTTTT
TTGATACCTCGTTTGACAAATGGTTCTTACCA
Found at i:960586 original size:43 final size:43
Alignment explanation
Indices: 960445--960586 Score: 98
Period size: 42 Copynumber: 3.3 Consensus size: 43
960435 TCATCAATTC
* * * * **
960445 ACCTTTAAAT-CTTTTGTTGACTTATCGGTTTGATCCTAATCA
1 ACCTTTATATCCTTTTGTTGACTTATCGATTAGATCTTGGTCA
* * * * *
960487 ACCTTTATATCC-TTTGTTTA-TCAATAGGCTTAG-TCTCTGGTAA
1 ACCTTTATATCCTTTTGTTGACT-TAT-CGATTAGATCT-TGGTCA
*
960530 ATCCTTT-TA-CCTTTTGTTGACTTATCGATTCGATCTTGGTCA
1 A-CCTTTATATCCTTTTGTTGACTTATCGATTAGATCTTGGTCA
960572 ACCTTTATATCCTTT
1 ACCTTTATATCCTTT
960587 ATTTACATGT
Statistics
Matches: 74, Mismatches: 16, Indels: 19
0.68 0.15 0.17
Matches are distributed among these distances:
41 6 0.08
42 34 0.46
43 28 0.38
44 6 0.08
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (43 bp):
ACCTTTATATCCTTTTGTTGACTTATCGATTAGATCTTGGTCA
Found at i:960603 original size:85 final size:86
Alignment explanation
Indices: 960455--960629 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 86
960445 ACCTTTAAAT
* * *
960455 CTTTTGTTGACTTATCGGTTTGATCCTAATCAACCTTTATATCCTTTGTTTATCAATAGGCTTAG
1 CTTTTGTTGACTTATCGATTCGATCCTAATCAACCTTTATATCCTTTATTTATCAATAGGCTTAG
* * *
960520 TCTCTGGTAAATCCTTTTA-C
66 TCTCGGGTAAACCCTGTTATC
* ** *
960540 CTTTTGTTGACTTATCGATTCGATCTTGGTCAACCTTTATATCCTTTATTTA-CATGTCA-GCTT
1 CTTTTGTTGACTTATCGATTCGATCCTAATCAACCTTTATATCCTTTATTTATCA-AT-AGGCTT
960603 AGTCTCGGGTAAACCCTGTTATC
64 AGTCTCGGGTAAACCCTGTTATC
960626 CTTT
1 CTTT
960630 GTTAACTAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
84 2 0.03
85 69 0.90
86 6 0.08
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (86 bp):
CTTTTGTTGACTTATCGATTCGATCCTAATCAACCTTTATATCCTTTATTTATCAATAGGCTTAG
TCTCGGGTAAACCCTGTTATC
Found at i:964266 original size:150 final size:150
Alignment explanation
Indices: 963960--964257 Score: 388
Period size: 150 Copynumber: 2.0 Consensus size: 150
963950 CGAAAGCATG
* * * * *
963960 AATTAGAAGTAGATTCA-CTTTTGCTTTTTCAAGTTCTCTAGGATCACCACGCACTTCTAAGTCG
1 AATTAGGAGTAGGTT-AGCTTTTGCTTTTTCAAGTCCTCTAAGATCACCACGCACTTCCAAGTCG
964024 ATGGTAAACCTTAGGAACCTTTTTAGCATTTTTCCCTGAAACCTAGTCTTGTGAAACTACCGAGT
65 ATGGTAAACCTTAGGAACCTTTTTAGCATTTTTCCCTGAAACCTAGTCTTGTGAAACTACCGAGT
*
964089 CTGCTTCTATGCCAAAGGTAT
130 CTACTTCTATGCCAAAGGTAT
****
964110 AATTAGGAGTAGGTTAGCTTTTGCTTTTTCAAGTCCTCTAAGATCATTGGGCACTTCCAAG-CTG
1 AATTAGGAGTAGGTTAGCTTTTGCTTTTTCAAGTCCTCTAAGATCACCACGCACTTCCAAGTC-G
* * * * * *
964174 ATGGTAGACCTTAGGGACCTTTTTCGCAGTTTTT-CCTGAAATCTAGTCTTGTGAAACTACTGGG
65 ATGGTAAACCTTAGGAACCTTTTTAGCA-TTTTTCCCTGAAACCTAGTCTTGTGAAACTACCGAG
*
964238 TC-ACTTCTATGCCAAGGGTA
129 TCTACTTCTATGCCAAAGGTA
964258 CGTGTTAGGG
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
149 18 0.14
150 105 0.82
151 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (150 bp):
AATTAGGAGTAGGTTAGCTTTTGCTTTTTCAAGTCCTCTAAGATCACCACGCACTTCCAAGTCGA
TGGTAAACCTTAGGAACCTTTTTAGCATTTTTCCCTGAAACCTAGTCTTGTGAAACTACCGAGTC
TACTTCTATGCCAAAGGTAT
Found at i:969612 original size:13 final size:13
Alignment explanation
Indices: 969594--969619 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
969584 ACACCAAAGT
969594 ATGTATCGATACA
1 ATGTATCGATACA
969607 ATGTATCGATACA
1 ATGTATCGATACA
969620 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:969619 original size:33 final size:33
Alignment explanation
Indices: 969575--969639 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
969565 TAGCCAAACT
* *
969575 TGTATCAATACAC-CAAAGTATGTATCGATACAA
1 TGTATCAATACACAAAAAAT-TGTATCGATACAA
*
969608 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCAATACACAAAAAATTGTATCGATACA
969640 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCAATACACAAAAAATTGTATCGATACAA
Found at i:971602 original size:21 final size:21
Alignment explanation
Indices: 971578--971631 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
971568 TTCTTATACT
971578 TTTGATGAATTACAAGAAGCA
1 TTTGATGAATTACAAGAAGCA
971599 TTTGATGAATTACAAGAAGCA
1 TTTGATGAATTACAAGAAGCA
971620 TTTGATGAATTA
1 TTTGATGAATTA
971632 GTATTAGAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGATGAATTACAAGAAGCA
Found at i:975835 original size:13 final size:13
Alignment explanation
Indices: 975817--975855 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
975807 ACATTTTTCT
975817 TTGTATCGATACA
1 TTGTATCGATACA
975830 TTGTATCGATACA
1 TTGTATCGATACA
*
975843 CTGTATCGATACA
1 TTGTATCGATACA
975856 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:978443 original size:13 final size:13
Alignment explanation
Indices: 978425--978450 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
978415 ACACCAAAGT
978425 ATGTATCGATACA
1 ATGTATCGATACA
978438 ATGTATCGATACA
1 ATGTATCGATACA
978451 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:978448 original size:33 final size:33
Alignment explanation
Indices: 978406--978470 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
978396 TAGCCAAACT
* *
978406 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
978439 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
978471 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:982614 original size:20 final size:20
Alignment explanation
Indices: 982589--982647 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
982579 AATGCTAAGG
982589 AAATGTATCGATACATTAGT
1 AAATGTATCGATACATTAGT
* ***
982609 AAATGTATTGATACATGCTT
1 AAATGTATCGATACATTAGT
982629 ACAATTGTATCGATACATT
1 A-AA-TGTATCGATACATT
982648 CCTCATTGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 17 0.55
21 2 0.06
22 12 0.39
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (20 bp):
AAATGTATCGATACATTAGT
Found at i:985272 original size:21 final size:21
Alignment explanation
Indices: 985248--985291 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
985238 ATCCATATAT
985248 GTCTCTAATATTGTCATTTTG
1 GTCTCTAATATTGTCATTTTG
985269 GTCTCTAATATTGTCATTTTG
1 GTCTCTAATATTGTCATTTTG
985290 GT
1 GT
985292 TATTTTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.14, G:0.16, T:0.52
Consensus pattern (21 bp):
GTCTCTAATATTGTCATTTTG
Found at i:990162 original size:21 final size:21
Alignment explanation
Indices: 990109--990172 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 21
990099 CTTCAGTTTT
990109 AAAA-TGACAGAAACAAAA-GAA
1 AAAATTGA-AGAAA-AAAATGAA
* *
990130 AAAGTT-ATGAAAAAAATGAA
1 AAAATTGAAGAAAAAAATGAA
*
990150 AAAATTGAAGAAAATAAT-AA
1 AAAATTGAAGAAAAAAATGAA
990170 AAA
1 AAA
990173 CAAATCAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
19 4 0.11
20 17 0.49
21 13 0.37
22 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAATTGAAGAAAAAAATGAA
Found at i:991773 original size:17 final size:17
Alignment explanation
Indices: 991751--991783 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
991741 ACTTATTTGA
*
991751 AAAAATACAAAAAAATC
1 AAAAATAAAAAAAAATC
991768 AAAAATAAAAAAAAAT
1 AAAAATAAAAAAAAAT
991784 TGAGTACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAATAAAAAAAAATC
Found at i:992559 original size:17 final size:17
Alignment explanation
Indices: 992537--992569 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
992527 AGTGAGACAA
992537 AAAG-AAGAAGAAAAAGG
1 AAAGAAAGAA-AAAAAGG
992554 AAAGAAAGAAAAAAAG
1 AAAGAAAGAAAAAAAG
992570 ATAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAAAAAAGG
Found at i:996634 original size:28 final size:28
Alignment explanation
Indices: 996528--997023 Score: 418
Period size: 28 Copynumber: 17.9 Consensus size: 28
996518 CCACGATACA
* * *
996528 GTGGCATTTCTTTTTAAAGTCCACGACTAC
1 GTGGCA-TCCTTTTT-AAGTCCACAACTCC
* * * **
996558 ATTGCATCC-TTTTAAGTCTACAACTTT
1 GTGGCATCCTTTTTAAGTCCACAACTCC
*
996585 GTGGCATCC-TTTTAAGTCCACAACACC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* *
996612 GTGGCATCCTTTTTAAGTCCACAATTCT
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* * *
996640 GTGGCATCCTTTTAAAGTCCATAAGTCC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* **
996668 GTGACATCC-TTTTAAGTCCACAACTTA
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* **
996695 GTGGCATCC-TTTAAAGTCCACAACTTT
1 GTGGCATCCTTTTTAAGTCCACAACTCC
*
996722 GTGGCA-CCTTGTTAAAGTCCACAACTCC
1 GTGGCATCCTT-TTTAAGTCCACAACTCC
* * **
996750 GTGGCATCC-TTCTAAGTCCATAACTTT
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* *
996777 GTGGCACCCTTTTAAAGTCCACAACTCC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
*
996805 GTGGCAT-CTTTTTAAAGTCCACAACTCT
1 GTGGCATCCTTTTT-AAGTCCACAACTCC
* * *
996833 GTGGCACCCTTTTAAATTCCACAACTCC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* * * *
996861 GTGGCACCCTTTTAAAGTCCAGAGCTCC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* * * *
996889 GTGGCACCCTTTTAAAGTCCACAAGTCT
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* * * * *
996917 ATGGCACCCTTTTAAAGTCCATAAGTCC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
* *
996945 GTGGCA-CCTTTTTAAAGTCTACAACTCT
1 GTGGCATCCTTTTT-AAGTCCACAACTCC
* * * *
996973 ATGACA-CCCTTTTAAGTCCACAACTTC
1 GTGGCATCCTTTTTAAGTCCACAACTCC
997000 GTGGCA-CTCTTTTTAAGTCCACAA
1 GTGGCATC-CTTTTTAAGTCCACAA
997024 GTCAATGGCA
Statistics
Matches: 383, Mismatches: 74, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.01
27 131 0.34
28 237 0.62
29 9 0.02
30 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (28 bp):
GTGGCATCCTTTTTAAGTCCACAACTCC
Found at i:997032 original size:28 final size:28
Alignment explanation
Indices: 996585--998204 Score: 837
Period size: 28 Copynumber: 57.2 Consensus size: 28
996575 CTACAACTTT
** *
996585 GTGGCA-TCCTTTT-AAGTCCACAACACC
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * *
996612 GTGGCA-TCCTTTTTAAGTCCACAATTCT
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* *
996640 GTGGCA-TCCTTTTAAAGTCCATAAGTCC
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * *
996668 GTGACA-TCCTTTT-AAGTCCACAACTTA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * **
996695 GTGGCA-TCCTTTAAAGTCCACAACTTT
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* *
996722 GTGGCAC-CTTGTTAAAGTCCACAACTCC
1 GTGGCACTCTT-TTAAAGTCCACAAGTCA
* * * **
996750 GTGGCA-TCCTTCT-AAGTCCATAACTTT
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * *
996777 GTGGCACCCTTTTAAAGTCCACAACTCC
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* *
996805 GTGGCA-TCTTTTTAAAGTCCACAACTCT
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * * *
996833 GTGGCACCCTTTTAAATTCCACAACTCC
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* * *
996861 GTGGCACCCTTTTAAAGTCCA-GAGCTCC
1 GTGGCACTCTTTTAAAGTCCACAAG-TCA
*
996889 GTGGCACCCTTTTAAAGTCCACAAGTCTA
1 GTGGCACTCTTTTAAAGTCCACAAGTC-A
* * *
996918 -TGGCACCCTTTTAAAGTCCATAAGTCC
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* *
996945 GTGGCAC-CTTTTTAAAGTCTACAACTCTA
1 GTGGCACTC-TTTTAAAGTCCACAAGTC-A
* * *
996974 -TGACACCCTTTT-AAGTCCACAACTTC-
1 GTGGCACTCTTTTAAAGTCCACAA-GTCA
*
997000 GTGGCACTCTTTTTAAGTCCACAAGTCA
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* * * * *
997028 ATGGCATTCCCTTCTAAAGCCCACAAGTTA
1 GTGGCA--CTCTTTTAAAGTCCACAAGTCA
*
997058 GTGGCACCCTTTTCAAAG-CTCACAAGTCA
1 GTGGCACTCTTTT-AAAGTC-CACAAGTCA
*
997087 GTGGCACTCTTTTCAAAGTCCACACAAGTCG
1 GTGGCACTCTTTT-AAAGT-C-CACAAGTCA
*
997118 GTGGCAACTCTTTTCAAAGCCCACAAGTCA
1 GTGGC-ACTCTTTT-AAAGTCCACAAGTCA
* * * * *
997148 ATGGCATTCCCTTCTAAAGCCCACAAGTTA
1 GTGGCA--CTCTTTTAAAGTCCACAAGTCA
*
997178 GTGGCACCCTTTTCAAAG-CTCACAAGTCA
1 GTGGCACTCTTTT-AAAGTC-CACAAGTCA
*
997207 GTGGCACTCTTTTCAAAGTCCACACAAGTCG
1 GTGGCACTCTTTT-AAAGT-C-CACAAGTCA
*
997238 GTGGCAACTCTTTTCAAAGCCCACAAGTCA
1 GTGGC-ACTCTTTT-AAAGTCCACAAGTCA
* * * * *
997268 ATGGCA-TCATTTCAAAGCCCATAAATCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * *
997296 GTGACA-TCATTTCAAAG-CCTAAAAGTCA
1 GTGGCACTC-TTTTAAAGTCC-ACAAGTCA
* * *
997324 GGGGCA-TCATTTCAAAGCCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* *
997352 GTGGCA-TCATTTCAAAGCCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * *
997380 GTGGCA-TCTTTTCAAAGCCCACAACTTA
1 GTGGCACTCTTTT-AAAGTCCACAAGTCA
* *
997408 GTGGCAC-CATTTCAAAGCCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* *
997436 GTGGCAC-CATTTCAAAGCCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* *
997464 GTGTCA-TCCTTTCAAAG-CCAACAAGTCA
1 GTGGCACT-CTTTTAAAGTCC-ACAAGTCA
** *
997492 GAAGCA-TCCTTTTAAAGCCCACAAGTCA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * * *
997520 GTGGCA-TCATTTCAAAGCCCATAAGTTA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * *
997548 GTGGCACTATTTCAAAGCCCACAAGTCA
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* *
997576 GTGGCA-TCCTTTCAAAGCCCACAAGTCA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* *
997604 GTGGCA-TCCTTTCAAAGCCCACAAGTCA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
*
997632 GTGGCA-TCATTTCAAAG-CTCACAAGTCA
1 GTGGCACTC-TTTTAAAGTC-CACAAGTCA
* * *
997660 GTGGCAC-CATTTCAAAGCCCATAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * **
997688 GTGGC-GTCTTTTCAAAGCCCATGAGTCA
1 GTGGCACTCTTTT-AAAGTCCACAAGTCA
** * *
997716 GTGGCA-TCATTCCAAAGCCCACGAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* *
997744 GTGGCA-TCATTTCAAAGCCCACGAA-TCA
1 GTGGCACTC-TTTTAAAGTCCAC-AAGTCA
* * *
997772 GTGGCA-TCATTTCAAAGCCCATAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* *
997800 GTGGCAC-CATTTCAAAGCCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * *
997828 GTGGCAC-CATTTCAAAGCCCACGAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* *
997856 GTGGCA-TCCTTTCAAAGCCCACAAGTCA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* *
997884 GTGGCA-TCCTTTCAAAGCCCACAAGTCA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * *
997912 GTGGCA-TCCTTTCAAAG-CCTACAGGTTA
1 GTGGCACT-CTTTTAAAGTCC-ACAAGTCA
* * * *
997940 GTAGTA-TCCTTTTAATGCCCACAAGTCA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
*
997968 GTGGCA-TCATTTCAAAGTCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * *
997996 GTGGCAAC-ATTTAAAAGCCCACAAGTCA
1 GTGGC-ACTCTTTTAAAGTCCACAAGTCA
* * * * *
998024 GTAGCACTATTTCAAAGCCCACAAGTTA
1 GTGGCACTCTTTTAAAGTCCACAAGTCA
* **
998052 GTGGCA-TCATTTCAAAGTTTACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * *
998080 GTGGCA-TCCTTTCAAAGCCCACAAGTTA
1 GTGGCACT-CTTTTAAAGTCCACAAGTCA
* * **
998108 GTGGTA-TCATTTCAAAACCCACAAGTCA
1 GTGGCACTC-TTTTAAAGTCCACAAGTCA
* * * * *
998136 ATGGCATACCCTTTCAAAGCCCATACAAGTCG
1 GTGGC--ACTCTTTTAAAGTCC--ACAAGTCA
*
998168 GTGGCAACTCTTTTCAAA-TCACACAAGTTA
1 GTGGC-ACTCTTTT-AAAGTC-CACAAGTCA
998198 GTGGCAC
1 GTGGCAC
998205 ATTTTTTTTA
Statistics
Matches: 1352, Mismatches: 164, Indels: 152
0.81 0.10 0.09
Matches are distributed among these distances:
26 4 0.00
27 118 0.09
28 969 0.72
29 90 0.07
30 87 0.06
31 43 0.03
32 41 0.03
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (28 bp):
GTGGCACTCTTTTAAAGTCCACAAGTCA
Found at i:997350 original size:84 final size:84
Alignment explanation
Indices: 997018--998208 Score: 1355
Period size: 84 Copynumber: 13.9 Consensus size: 84
997008 CTTTTTAAGT
* ** * * * *
997018 CCACAAGTCAATGGCATTCCCTTCTAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAGCTCACAA
1 CCACAAGTCAGTGGCA-TCATTTC-AAAGCCCACAAGTCAGTGGCA-TCATTTCAAAGCCCACAA
*
997083 GTCAGTGGCACTCTTTTCAAAGTC
63 GTCAGTGGCA-TCATTTCAAAG-C
* * * **
997107 CACACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAATGGCATTCCCTTCTAAAGCCCAC
1 C-CACAAGTCAGTGGC-A-TCATTTCAAAGCCCACAAGTCAGTGGCA-TCATTTC-AAAGCCCAC
* * *
997172 AAGTTAGTGGCACCCTTTTCAAAGC
61 AAGTCAGTGGCA-TCATTTCAAAGC
* * * *
997197 TCACAAGTCAGTGGCACTCTTTTCAAAGTCCACACAAGTCGGTGGCAACTCTTTTCAAAGCCCAC
1 CCACAAGTCAGTGGCA-TCATTTCAAAG-CC-CACAAGTCAGTGGC-A-TCATTTCAAAGCCCAC
*
997262 AAGTCAATGGCATCATTTCAAAGC
61 AAGTCAGTGGCATCATTTCAAAGC
* * * * * *
997286 CCATAAATCAGTGACATCATTTCAAAGCCTAAAAGTCAGGGGCATCATTTCAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
997351 AGTGGCATCATTTCAAAGC
66 AGTGGCATCATTTCAAAGC
* * * *
997370 CCACAAGTCAGTGGCATCTTTTCAAAGCCCACAACTTAGTGGCACCATTTCAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
*
997435 AGTGGCACCATTTCAAAGC
66 AGTGGCATCATTTCAAAGC
* * * ** * *
997454 CCACAAGTCAGTGTCATCCTTTCAAAGCCAACAAGTCAGAAGCATCCTTTTAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
997519 AGTGGCATCATTTCAAAGC
66 AGTGGCATCATTTCAAAGC
* * *
997538 CCATAAGTTAGTGGCA-CTATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
1 CCACAAGTCAGTGGCATC-ATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGT
*
997602 CAGTGGCATCCTTTCAAAGC
65 CAGTGGCATCATTTCAAAGC
* * *
997622 CCACAAGTCAGTGGCATCATTTCAAAGCTCACAAGTCAGTGGCACCATTTCAAAGCCCATAAGTC
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
* *
997687 AGTGGCGTCTTTTCAAAGC
66 AGTGGCATCATTTCAAAGC
** * *
997706 CCATGAGTCAGTGGCATCATTCCAAAGCCCACGAGTCAGTGGCATCATTTCAAAGCCCACGAA-T
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCAC-AAGT
997770 CAGTGGCATCATTTCAAAGC
65 CAGTGGCATCATTTCAAAGC
* * * *
997790 CCATAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACGAGTC
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
*
997855 AGTGGCATCCTTTCAAAGC
66 AGTGGCATCATTTCAAAGC
* * * * *
997874 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCTACAGGTT
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
* * * * *
997939 AGTAGTATCCTTTTAATGC
66 AGTGGCATCATTTCAAAGC
* * *
997958 CCACAAGTCAGTGGCATCATTTCAAAGTCCACAAGTCAGTGGCAACATTTAAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
*
998023 AGTAGCA-CTATTTCAAAGC
66 AGTGGCATC-ATTTCAAAGC
* *** * *
998042 CCACAAGTTAGTGGCATCATTTCAAAGTTTACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTT
1 CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
* *
998107 AGTGGTATCATTTCAAAAC
66 AGTGGCATCATTTCAAAGC
* * * * * *
998126 CCACAAGTCAATGGCATACCCTTTCAAAGCCCATACAAGTCGGTGGCAACTCTTTTCAAATCACA
1 CCACAAGTCAGTGGCAT--CATTTCAAAGCCC--ACAAGTCAGTGGC-A-TCATTTCAAAGCCCA
*
998191 CAAGTTAGTGGCA-CATTT
60 CAAGTCAGTGGCATCATTT
998209 TTTTTAAAAG
Statistics
Matches: 947, Mismatches: 137, Indels: 36
0.85 0.12 0.03
Matches are distributed among these distances:
83 3 0.00
84 706 0.75
85 5 0.01
86 19 0.02
87 2 0.00
88 35 0.04
89 44 0.05
90 91 0.10
91 42 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (84 bp):
CCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTC
AGTGGCATCATTTCAAAGC
Found at i:997638 original size:56 final size:56
Alignment explanation
Indices: 996585--998203 Score: 1361
Period size: 56 Copynumber: 28.6 Consensus size: 56
996575 CTACAACTTT
* * ** * ** * * *
996585 GTGGCATCCTTT-TAAGTCCACAACACCGTGGCATCCTTTTTAAGTCCACAATTCT
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * * * * * * *
996640 GTGGCATCCTTTTAAAGTCCATAAGTCCGTGACATCCTTT-TAAGTCCACAACTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * ** * * * *
996695 GTGGCATCCTTT-AAAGTCCACAACTTTGTGGCA-CCTTGTTAAAGTCCACAACTCC
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCA
* * * * ** * * * * *
996750 GTGGCATCC-TTCTAAGTCCATAACTTTGTGGCACCCTTTTAAAGTCCACAACTCC
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * * * * * ** * *
996805 GTGGCATCTTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAATTCCACAACTCC
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * * * * * *
996861 GTGGCACCCTTTTAAAGTCCA-GAGCTCCGTGGCACCCTTTTAAAGTCCACAAGTCTA
1 GTGGCATCCTTTCAAAGCCCACAAG-TCAGTGGCATCCTTTCAAAGCCCACAAGTC-A
* * * * * * * * *
996918 -TGGCACCCTTTTAAAGTCCATAAGTCCGTGGCA-CCTTTTTAAAGTCTACAACTCTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTC-A
* * * * * ** *
996974 -TGACACCCTTT-TAAGTCCACAACTTC-GTGGCA-CTCTTTTTAAGTCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAA-GTCAGTGGCATC-CTTTCAAAGCCCACAAGTCA
* * * * *
997028 ATGGCATTCCCTTCTAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAGCTCACAAGTCA
1 GTGGCA-TCCTTTC-AAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCA
* * *
997087 GTGGCACTCTTTTCAAAGTCCACACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCA
1 GTGGCA-TCCTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACAAGTCA
* * * * *
997148 ATGGCATTCCCTTCTAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAGCTCACAAGTCA
1 GTGGCA-TCCTTTC-AAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCA
* * *
997207 GTGGCACTCTTTTCAAAGTCCACACAAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCA
1 GTGGCA-TCCTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACAAGTCA
* * * * * * * *
997268 ATGGCATCATTTCAAAGCCCATAAATCAGTGACATCATTTCAAAGCCTAAAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * *
997324 GGGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * *
997380 GTGGCATCTTTTCAAAGCCCACAACTTAGTGGCA-CCATTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCA
* *
997436 GTGGCA-CCATTTCAAAGCCCACAAGTCAGTGTCATCCTTTCAAAGCCAACAAGTCA
1 GTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
** * * * *
997492 GAAGCATCCTTTTAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCATAAGTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
*
997548 GTGGCA-CTATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* *
997604 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCTCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * **
997660 GTGGCA-CCATTTCAAAGCCCATAAGTCAGTGGCGTCTTTTCAAAGCCCATGAGTCA
1 GTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * *
997716 GTGGCATCATTCCAAAGCCCACGAGTCAGTGGCATCATTTCAAAGCCCACGAA-TCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCAC-AAGTCA
* *
997772 GTGGCATCATTTCAAAGCCCATAAGTCAGTGGCA-CCATTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCA
*
997828 GTGGCA-CCATTTCAAAGCCCACGAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * *
997884 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCTACAGGTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * * * *
997940 GTAGTATCCTTTTAATGCCCACAAGTCAGTGGCATCATTTCAAAGTCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * * * *
997996 GTGGCAACATTTAAAAGCCCACAAGTCAGTAGCA-CTATTTCAAAGCCCACAAGTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCA
* *** *
998052 GTGGCATCATTTCAAAGTTTACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * * * *
998108 GTGGTATCATTTCAAAACCCACAAGTCAATGGCATACCCTTTCAAAGCCCATACAAGTCG
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT--CCTTTCAAAGCCC--ACAAGTCA
* * * *
998168 GTGGCAACTCTTTTCAAATCACACAAGTTAGTGGCA
1 GTGGC-A-TCCTTTCAAAGCCCACAAGTCAGTGGCA
998204 CATTTTTTTT
Statistics
Matches: 1325, Mismatches: 188, Indels: 95
0.82 0.12 0.06
Matches are distributed among these distances:
53 4 0.00
54 20 0.02
55 149 0.11
56 886 0.67
57 16 0.01
58 48 0.04
59 61 0.05
60 56 0.04
61 56 0.04
62 29 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (56 bp):
GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
Found at i:998333 original size:45 final size:47
Alignment explanation
Indices: 998284--998397 Score: 108
Period size: 49 Copynumber: 2.4 Consensus size: 47
998274 CCGATATCGT
* * *
998284 TGGCCTTGAATCAGCATATT-GACACCTTTAT-T-AGCCCAATGTCGC
1 TGGCCTTGAATCAGCACATTAGACAACTTT-TCTCAGCCCAATGTCAC
* * *
998329 TGGCCTTTATTCAGCACATTAGTCAACTTTTCCCTCAGCCCAATGTCAC
1 TGGCCTTGAATCAGCACATTAGACAACTTTT--CTCAGCCCAATGTCAC
**
998378 TGGCCTTGAATTGGCACATT
1 TGGCCTTGAATCAGCACATT
998398 GGCACTTCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
45 18 0.33
46 7 0.13
48 1 0.02
49 28 0.52
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (47 bp):
TGGCCTTGAATCAGCACATTAGACAACTTTTCTCAGCCCAATGTCAC
Found at i:1000119 original size:101 final size:101
Alignment explanation
Indices: 999964--1000200 Score: 264
Period size: 101 Copynumber: 2.4 Consensus size: 101
999954 AGGAATGTTA
* * * * * * *
999964 AAGATGCCAATATGCTAATTCAAGGCCAACGATATCGGACTT--AAA-GGTGAAGGTGCCAATAT
1 AAGATGCCAATATCCTGATTCAAGCCCAGCGACATTGGACTTAAAAATGGTTAAGGTGCCAATAT
* * *
1000026 GCTGATTCAAAGCCAGCGATATCGGACTTAAAGATG
66 GCTGATTCAAAGCCAACGACATCAGACTTAAAGATG
* * * * *
1000062 AAGATGCCAATGTCCTTATTCAAGCCCGGCGACATTGGACTTAAAAATGGTTAAGGTGTCAATTT
1 AAGATGCCAATATCCTGATTCAAGCCCAGCGACATTGGACTTAAAAATGGTTAAGGTGCCAATAT
* *
1000127 GCTGATTCAAGGCCAACGACATCAGTCTTAAAGATG
66 GCTGATTCAAAGCCAACGACATCAGACTTAAAGATG
* * * *
1000163 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 AAGATGCCAATATCCTGATTCAAGCCCAGCGACATTGG
1000201 GCTTCTGCCA
Statistics
Matches: 113, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
98 34 0.30
100 3 0.03
101 76 0.67
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (101 bp):
AAGATGCCAATATCCTGATTCAAGCCCAGCGACATTGGACTTAAAAATGGTTAAGGTGCCAATAT
GCTGATTCAAAGCCAACGACATCAGACTTAAAGATG
Found at i:1000221 original size:39 final size:39
Alignment explanation
Indices: 1000167--1000413 Score: 188
Period size: 39 Copynumber: 5.9 Consensus size: 39
1000157 AAGATGAAGG
*
1000167 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTC
* * *
1000206 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGC-T-----T---C
* * *
1000254 TGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTC
* *
1000293 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGAC
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTT-----C
* * * *
1000337 AAGGTGCCAATTTGCTGATTCAAGGCCAGTGATATTAGGCTTG
1 ----TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTC
* * *
1000380 TGCCAATGTACTTATTCAAGGCCAGTGATATTGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGG
1000414 TCTTAGAGAC
Statistics
Matches: 166, Mismatches: 24, Indels: 36
0.73 0.11 0.16
Matches are distributed among these distances:
39 97 0.58
40 1 0.01
42 1 0.01
45 1 0.01
47 1 0.01
48 65 0.39
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (39 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTC
Found at i:1000277 original size:48 final size:47
Alignment explanation
Indices: 1000206--1001077 Score: 668
Period size: 48 Copynumber: 18.9 Consensus size: 47
1000196 ATTGGGCTTC
* * *
1000206 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AAAG
* *
1000254 TGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTT-------A-
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* * * * *
1000293 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AAAG
* *
1000341 TGCCAATTTGCTGATTCAAGGCCAGTGATATTAGG-CTT--------G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAAAAG
* * * * * *
1000380 TGCCAATGTACTTATTCAAGGCCAGTGATATTGGTCTTAGAGACAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AAAG
* * * * * *
1000428 TGACAATATGCTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AAAG
* * *
1000476 TGCCAATATGCTGATTCAAGGCCAGCGATATTTGACTCAAGATGGTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA-A--G-AAAAG
* *
1000527 TGTCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAG----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* * * *
1000570 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AAAG
1000618 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* * * *
1000661 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* *
1000708 -GCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATGGTAAAGG
1 TG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA-A--G-AAAAG
* *
1000760 TGTCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAG----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* * * * * *
1000803 TGCCAATGTGCTTATTCAAGGCTAGTGACATTGGACTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AAAG
*
1000851 TGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAG----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* * * * * * *
1000894 TGCTAATGTGCTGATTCAAAGCCAGCGACATTAGTCTTAAAGACAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
* * * * *
1000941 ATGCCAATTTGCTGATTCAAGGCCAACGATATTGGAGTCAAGATGGTAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA-A--G-AAAAG
* * * ** **
1000993 TGTCAATATGTTGATTCAATGCCATTGATATTGGTTTTAAAG----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
*
1001036 TGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1001078 GTGAGAAAAA
Statistics
Matches: 673, Mismatches: 97, Indels: 113
0.76 0.11 0.13
Matches are distributed among these distances:
38 2 0.00
39 67 0.10
40 1 0.00
43 190 0.28
46 1 0.00
47 2 0.00
48 285 0.42
49 5 0.01
50 3 0.00
51 109 0.16
52 7 0.01
53 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (47 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAAAG
Found at i:1000286 original size:87 final size:88
Alignment explanation
Indices: 1000121--1000742 Score: 721
Period size: 87 Copynumber: 6.9 Consensus size: 88
1000111 GTTAAGGTGT
* * ** *
1000121 CAATTTGCTGATTCAAGGCCAACGACATCAGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAA
*
1000186 GGCCAGCGATATTGGGCTT-CTGC
65 GGCCAGCGATATTGGGCTTAGTGC
* *
1000209 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGTGCCAATATGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
*
1000274 GCCAACGATATTGGGCTTA-TGC
66 GCCAGCGATATTGGGCTTAGTGC
* *
1000296 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATTTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
* *
1000361 GCCAGTGATATTAGGCTT-GTGC
66 GCCAGCGATATTGGGCTTAGTGC
* * * * * * *
1000383 CAATGTACTTATTCAAGGCCAGTGATATTGGTCTTAGAGACAAAGTGACAATATGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
* * *
1000448 GCCAGCAACATTGGTCTTAGAGACAAGGTGC
66 GCCAGCGATATTGGGCTT-------A-GTGC
* * * * * * *
1000479 CAATATGCTGATTCAAGGCCAGCGATATTTGACTCAAGATGGTA-AAGGTGTCAATATGCTAATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAA-A--G-ACAAGGTGCCAATATGCTGATT
*
1000543 CAAGGCCAGCGATATTGGACTTAAAGGTGC
62 CAAGGCCAGCGATATTGGGCTT--A-GTGC
* *
1000573 CAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
*
1000638 GCCAGCGATATTGGACTTAAAGGTGC
66 GCCAGCGATATTGGGCTT--A-GTGC
**
1000664 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGCACCAATATGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
1000729 GCCAGCGATATTGG
66 GCCAGCGATATTGG
1000743 ACTCAAGATG
Statistics
Matches: 466, Mismatches: 52, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
87 193 0.41
88 36 0.08
90 1 0.00
91 124 0.27
93 1 0.00
94 39 0.08
96 33 0.07
97 1 0.00
99 37 0.08
100 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (88 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
GCCAGCGATATTGGGCTTAGTGC
Found at i:1000625 original size:142 final size:134
Alignment explanation
Indices: 1000206--1001080 Score: 649
Period size: 142 Copynumber: 6.3 Consensus size: 134
1000196 ATTGGGCTTC
* * * * *
1000206 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGTGCCAATATGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-----GTGCCAATGTGCTAATTC
* * * * *
1000271 AAGGCCAACGATATTGGGCTT--A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
61 AAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
*
1000332 GAGACAAGG
126 AAGACAAGG
* * * *
1000341 TGCCAATTTGCTGATTCAAGGCCAGTGATATTAGG-CTT----GTGCCAATGTACTTATTCAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGGTGCCAATGTGCTAATTCAAGG
* * * * * * *
1000401 CCAGTGATATTGGTCTTAGAGACAAAGTGACAATATGCTGATTCAAGGCCAGCAACATTGGTCTT
65 CCAGCGACATTGGACTT----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
*
1000466 AGAGACAAGG
125 AAAGACAAGG
* * *
1000476 TGCCAATATGCTGATTCAAGGCCAGCGATATTTGACTCAAGATGGTAAAGGTGTCAATATGCTAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGA--C----T--TAAAGGTGCCAATGTGCTAA
* * *
1000541 TTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGAC
58 TTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
1000606 TTAAAGACAAGG
123 TTAAAGACAAGG
*
1000618 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGC
* * *
1000683 CAGCGACATTGGTCTTAAAGACAAG-GCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTC
66 CAGCGACATTGGACTTAAAG----GTG--CCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
1000747 AAGATGGTA-AAGG
125 AA-A--G-ACAAGG
* * *
1000760 TGTCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTTATTCAAGGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGC
* * * *
1000825 TAGTGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTT-
66 CAGCGACATTGGACTT----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
1000889 ---A-AAGG
126 AAGACAAGG
* * * * * * * *
1000894 TGCTAATGTGCTGATTCAAAGCCAGCGACATTAGTCTTAAAGACAAGATGCCAATTTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----G-TGCCAATGTGCTAATTC
* * * * * ** *
1000959 AAGGCCAACGATATTGGAGTCAAGATGGTAAAGGTGTCAATATGTTGATTCAATGCCATTGATAT
61 AAGGCCAGCGACATTGGA--C----T--TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACAT
**
1001024 TGG--TT--TTA-AAGG
118 TGGACTTAAAGACAAGG
*
1001036 TGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTG
1001081 AGAAAAAAGA
Statistics
Matches: 613, Mismatches: 73, Indels: 106
0.77 0.09 0.13
Matches are distributed among these distances:
126 33 0.05
133 1 0.00
134 83 0.14
135 107 0.17
136 3 0.00
137 4 0.01
138 3 0.00
139 63 0.10
140 4 0.01
141 2 0.00
142 265 0.43
143 5 0.01
144 1 0.00
145 1 0.00
146 1 0.00
147 37 0.06
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (134 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGC
CAGCGACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAC
AAGG
Found at i:1000707 original size:233 final size:233
Alignment explanation
Indices: 1000431--1001077 Score: 1051
Period size: 233 Copynumber: 2.8 Consensus size: 233
1000421 GACAAAGTGA
* * *
1000431 CAATATGCTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
*
1000496 GCCAGCGATATTTGACTCAAGATGGTAAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGG
66 GCCAGCGATATTGGACTCAAGATGGTAAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGG
1000561 ACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGACAAGGTGCCAATA
131 ACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGACAAGGTGCCAATA
*
1000626 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGC
196 TGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGC
**
1000664 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGCACCAATATGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
1000729 GCCAGCGATATTGGACTCAAGATGGTAAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGG
66 GCCAGCGATATTGGACTCAAGATGGTAAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGG
* *
1000794 ACTTAAAGGTGCCAATGTGCTTATTCAAGGCTAGTGACATTGGACTTAAAGACAAGGTGCCAATA
131 ACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGACAAGGTGCCAATA
1000859 TGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGC
196 TGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGC
* * * * *
1000897 TAATGTGCTGATTCAAAGCCAGCGACATTAGTCTTAAAGACAAGATGCCAATTTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
* * * * * **
1000962 GCCAACGATATTGGAGTCAAGATGGTAAAGGTGTCAATATGTTGATTCAATGCCATTGATATTGG
66 GCCAGCGATATTGGACTCAAGATGGTAAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGG
** * * * *
1001027 TTTTAAAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
131 ACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAG
1001078 GTGAGAAAAA
Statistics
Matches: 383, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
233 383 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (233 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAG
GCCAGCGATATTGGACTCAAGATGGTAAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGG
ACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGACAAGGTGCCAATA
TGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGC
Found at i:1001208 original size:33 final size:33
Alignment explanation
Indices: 1001099--1001631 Score: 523
Period size: 33 Copynumber: 16.6 Consensus size: 33
1001089 GATAAATGGA
* *
1001099 TGCCACGGAGGTGTAGG-CTTAAAAGGGAAAAGGG
1 TGCCACGGAGTTGT-GGACTTAAAA-GGAAAAAGG
* *
1001133 TGCCACGGAGTCGTGGACTTAAAAAG-AAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* * *
1001165 TGCCATGGAGTTGTGGATTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* * *
1001198 TGCCGCGGAGTTGTGGACGTAAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
**
1001231 TGCCACAAAGTTGTGGACTTAAAA-G-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
*
1001258 TGCCACGAAGTTG-GGCACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGG-ACTTAAAAGGAAAAAG-G
* * *
1001292 TGCCACGAAGTTGTGGACTCAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
** * *
1001325 TGCCACAAAGTTATGGACTTAAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* * *
1001358 TGTCACGGAATTGTGGACTTCAAA-G-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
*
1001385 TGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAG-G
* * * *
1001419 TACCACAGAGTTGTAGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* *
1001452 TGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* *
1001485 TGCCACAGAGTTGTGGACATAAAA-G-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
*
1001512 TGCCATGGAGTTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAG-G
* * *
1001546 TGCCATGGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* *
1001579 TGCCATGGAGTTGTGGACTTAAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
1001612 TGCCACGGAGTTGTGGACTT
1 TGCCACGGAGTTGTGGACTT
1001632 TGAGAAGAAA
Statistics
Matches: 413, Mismatches: 61, Indels: 51
0.79 0.12 0.10
Matches are distributed among these distances:
26 2 0.00
27 64 0.15
28 3 0.01
32 30 0.07
33 204 0.49
34 108 0.26
35 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
Found at i:1001328 original size:127 final size:127
Alignment explanation
Indices: 1001126--1001631 Score: 682
Period size: 127 Copynumber: 4.0 Consensus size: 127
1001116 CTTAAAAGGG
* * * * * *
1001126 AAAAGGGTGCCACGGAGTCGTGGACTTAAAAAG-AAAAG-GTGCCATGGAGTTGTGGATTTAAAA
1 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTTAAAA
* *
1001189 GGAACAAGGTGCCGCGGAGTTGTGGACGTAAAAGGAAAAAGATGCCACAAAGTTGTGGACTT
66 GGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAAAGTTGTGGACTT
*
1001251 AAAAGGGTGCCACGAAGTTG-GGCACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTCAAA
1 AAAAGGGTGCCACGAAGTTGTGG-ACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTTAAA
** * * *
1001315 AGGAACAAGGTGCCACAAAGTTATGGACTTAAAAGGAAAAAGATGTCACGGAA-TTGTGGACTT
65 AGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCAC-AAAGTTGTGGACTT
* * *
1001378 CAAAGGGTGCCAC-AGAGTTGTGGACTTAAAAGGAAAAAGAGTACCAC-AGAGTTGTAGACTTAA
1 AAAAGGGTGCCACGA-AGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGA-AGTTGTGGACTTAA
* * *
1001441 AAGGAACAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACAT
64 AAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAAAGTTGTGGACTT
* * * * *
1001505 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTCGTGGACTTAAAA
1 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTTAAAA
* **
1001570 GGAACAAGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTT
66 GGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAAAGTTGTGGACTT
1001632 TGAGAAGAAA
Statistics
Matches: 333, Mismatches: 38, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
124 2 0.01
125 27 0.08
126 8 0.02
127 292 0.88
128 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (127 bp):
AAAAGGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTTAAAA
GGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAAAGTTGTGGACTT
Found at i:1001516 original size:27 final size:27
Alignment explanation
Indices: 1001485--1001537 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
1001475 AGGAAAAAGA
1001485 TGCCACAGAGTTGTGGACATAAAAGGG
1 TGCCACAGAGTTGTGGACATAAAAGGG
** *
1001512 TGCCATGGAGTTGTGGACTTAAAAGG
1 TGCCACAGAGTTGTGGACATAAAAGG
1001538 AAAAAGAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (27 bp):
TGCCACAGAGTTGTGGACATAAAAGGG
Found at i:1001590 original size:94 final size:93
Alignment explanation
Indices: 1001426--1001604 Score: 259
Period size: 94 Copynumber: 1.9 Consensus size: 93
1001416 GAGTACCACA
* * *
1001426 GAGTTGTAGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGATGCCAC
1 GAGTTGTAGACTTAAAAGGAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAAGATGCCAC
1001491 AGAGTTGTGGACATAAAAGGGTGCCATG
66 AGAGTTGTGGACATAAAAGGGTGCCATG
* * * *
1001519 GAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTCGTGGACTTAAAAGGAACAAGGTGCCA
1 GAGTTGTAGACTTAAAAGGAAAAAG-GTGCCACGGAGTCGTGGACTTAAAAGGAAAAAGATGCCA
** *
1001584 TGGAGTTGTGGACTTAAAAGG
65 CAGAGTTGTGGACATAAAAGG
1001605 AAAAAGATGC
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 23 0.31
94 52 0.69
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.20
Consensus pattern (93 bp):
GAGTTGTAGACTTAAAAGGAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAAGATGCCAC
AGAGTTGTGGACATAAAAGGGTGCCATG
Found at i:1001628 original size:254 final size:252
Alignment explanation
Indices: 1001127--1001631 Score: 751
Period size: 254 Copynumber: 2.0 Consensus size: 252
1001117 TTAAAAGGGA
* * ** * *
1001127 AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGCCATGGAGTTGTGGATTTAAAAGGA
1 AAAGGGTGCCACAGAGTCGTGGACTTAAAAAGAAAAGGTACCACAGAGTTGTAGACTTAAAAGGA
* *
1001192 ACAAGGTGCCGCGGAGTTGTGGACGTAAAAGGAAAAAGATGCCACAAAGTTGTGGACTTAAAAGG
66 ACAAGGTGCCACGGAGTTGTGGACGTAAAAGGAAAAAGATGCCACAAAGTTGTGGACATAAAAGG
*
1001257 GTGCCACGAAGTTGGGCACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTCAAAAGGAACA
131 GTGCCACGAAGTTGGGCACTTAAAAGGAAAAAGAGTGCCACGAAGTCGTGGACTCAAAAGGAACA
*
1001322 AGGTGCCACAAAGTTATGGACTTAAAAGGAAAAAGATGTCACGGAATTGTGGACTTC
196 AGGTGCCACAAAGTTATGGACTTAAAAGGAAAAAGATGCCACGGAATTGTGGACTTC
* *
1001379 AAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTACCACAGAGTTGTAGACTTAAAAG
1 AAAGGGTGCCACAGAGTCGTGGACTTAAAAAG-AAAAG-GTACCACAGAGTTGTAGACTTAAAAG
* * *
1001444 GAACAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACATAAAA
64 GAACAAGGTGCCACGGAGTTGTGGACGTAAAAGGAAAAAGATGCCACAAAGTTGTGGACATAAAA
* * * * *
1001509 GGGTGCCATGGAGTTGTGG-ACTTAAAAGGAAAAAGAGTGCCATGGAGTCGTGGACTTAAAAGGA
129 GGGTGCCACGAAGTTG-GGCACTTAAAAGGAAAAAGAGTGCCACGAAGTCGTGGACTCAAAAGGA
*** * *
1001573 ACAAGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTT
193 ACAAGGTGCCACAAAGTTATGGACTTAAAAGGAAAAAGATGCCACGGAATTGTGGACTT
1001632 TGAGAAGAAA
Statistics
Matches: 225, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
252 29 0.13
253 5 0.02
254 189 0.84
255 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (252 bp):
AAAGGGTGCCACAGAGTCGTGGACTTAAAAAGAAAAGGTACCACAGAGTTGTAGACTTAAAAGGA
ACAAGGTGCCACGGAGTTGTGGACGTAAAAGGAAAAAGATGCCACAAAGTTGTGGACATAAAAGG
GTGCCACGAAGTTGGGCACTTAAAAGGAAAAAGAGTGCCACGAAGTCGTGGACTCAAAAGGAACA
AGGTGCCACAAAGTTATGGACTTAAAAGGAAAAAGATGCCACGGAATTGTGGACTTC
Found at i:1005519 original size:19 final size:19
Alignment explanation
Indices: 1005495--1005608 Score: 144
Period size: 19 Copynumber: 6.6 Consensus size: 19
1005485 AGCGATACAT
1005495 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1005514 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1005533 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1005546 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1005565 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1005578 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1005597 TGTATCGATACA
1 TGTATCGATACA
1005609 GTTACTGTTT
Statistics
Matches: 83, Mismatches: 0, Indels: 24
0.78 0.00 0.22
Matches are distributed among these distances:
13 18 0.22
14 2 0.02
16 12 0.14
18 2 0.02
19 49 0.59
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1005550 original size:32 final size:32
Alignment explanation
Indices: 1005514--1005608 Score: 190
Period size: 32 Copynumber: 3.0 Consensus size: 32
1005504 ACAACACTTA
1005514 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
1005546 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
1005578 TGTATCGATACAACACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
1005609 GTTACTGTTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:1005551 original size:13 final size:13
Alignment explanation
Indices: 1005533--1005589 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1005523 ACAACACTTA
1005533 TGTATCGATACAT
1 TGTATCGATACAT
1005546 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
1005564 ATGTATCGATACAT
1 -TGTATCGATACAT
1005578 TGTATCGATACA
1 TGTATCGATACA
1005590 ACACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1005608 original size:51 final size:48
Alignment explanation
Indices: 1005482--1005589 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 48
1005472 GCAGTAGCTT
*
1005482 TGTAGCGATACATTGTATCGATACAACACTTATGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTATGTATCGAT--AACAC-TA
1005533 TGTATCGATACATTGTATCGATACAACACTTATGTATCGAT-ACA-T-
1 TGTATCGATACATTGTATCGATACAACACTTATGTATCGATAACACTA
1005578 TGTATCGATACA
1 TGTATCGATACA
1005590 ACACTTATGT
Statistics
Matches: 56, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
45 12 0.21
46 1 0.02
48 3 0.05
51 40 0.71
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (48 bp):
TGTATCGATACATTGTATCGATACAACACTTATGTATCGATAACACTA
Found at i:1006486 original size:49 final size:49
Alignment explanation
Indices: 1006295--1006888 Score: 432
Period size: 49 Copynumber: 12.0 Consensus size: 49
1006285 TGATATTAGG
* * * * * *
1006295 CTTAAAGATGTAAAGAATGTCAATGTGCTGATTCACGGTCA-ACGACCTTAGT
1 CTTAAAGATG-AAAG--TGCCAATGTGCTGATTCAAGGCCAGA-GACATTGGA
* * * *
1006347 CTTGAAGATGAGAAGAATGACAATGTGCTGATTCAAGGCCAGCGACATTGGGT
1 CTTAAAGATGA-AAG--TGCCAATGTGCTGATTCAAGGCCAGAGACATT-GGA
* * * * * *
1006400 TTTAAAGATGACGAAGGCGCCAATATGCTAATTCAAGGCTAGAGATATTGGA
1 CTTAAAGATGA--AA-GTGCCAATGTGCTGATTCAAGGCCAGAGACATTGGA
*
1006452 CTTAAAGATGAAAGTGCCAATGAGCTGATTCAAGGCCAGCA-ACATTGGA
1 CTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAG-AGACATTGGA
* **
1006501 CTTAAAGGTGAGGGTGCCAATGTGCTGATTCAAGGCCAGCA-ACATTGGA
1 CTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAG-AGACATTGGA
* **
1006550 CTTAAAGGTGAGGGTGCCAATGTGCTGATTCAAGGCCAGCA-ACATTGGA
1 CTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAG-AGACATTGGA
** *
1006599 CTTACAAG-TGAGGGTGCCAATGTGCTGATTCAAGGCCAGCA-ACGTTGGA
1 CTTA-AAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAG-AGACATTGGA
* * ** * *
1006648 CTTATAGGTGAGGGTGTCAATGTGTTGATTCAAGGCCA-ACGACATTAGG-
1 CTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGA-GACATT-GGA
* * * **
1006697 CTTAGGAATG-TTAAAGATGCCAATATGCTGATTCAAGGCCA-ATGATATCAGA
1 CTTA--AA-GATGAAAG-TGCCAATGTGCTGATTCAAGGCCAGA-GACATTGGA
* * * *
1006749 CCTAAAGATG-AAGATACCAATGTGCTGATTCAAGGCCAGCGACATTAGA
1 CTTAAAGATGAAAG-TGCCAATGTGCTGATTCAAGGCCAGAGACATTGGA
* * *
1006798 CTT----A--AAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGAGACATTGGA
*
1006841 CTTAAAGATG-AAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
1 CTTAAAGATGAAAG-TGCCAATGTGCTGATTCAAGGCCAGAGACATTGG
1006889 TTTAAAGGTG
Statistics
Matches: 458, Mismatches: 58, Indels: 55
0.80 0.10 0.10
Matches are distributed among these distances:
43 34 0.07
44 3 0.01
45 1 0.00
47 2 0.00
48 5 0.01
49 274 0.60
50 11 0.02
51 6 0.01
52 82 0.18
53 36 0.08
54 3 0.01
55 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
CTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGAGACATTGGA
Found at i:1006567 original size:98 final size:96
Alignment explanation
Indices: 1006367--1006940 Score: 576
Period size: 98 Copynumber: 5.9 Consensus size: 96
1006357 AGAAGAATGA
** * *
1006367 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATGCTAAT
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGACTT-AA-ATGA-G--GGTGCCAATATGCTGAT
* *
1006432 TCAAGGCTAG-AGATATTGGACTTAAAGATGAAAGTGC
60 TCAAGGCCAGCA-ATATTGGACTTAAAGATGAAGGTGC
* * *
1006469 CAATGAGCTGATTCAAGGCCAGCAACATTGGACTTAAAGGTGAGGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA--TGAGGGTGCCAATATGCTGATTCAA
* * *
1006534 GGCCAGCAACATTGGACTTAAAGGTGAGGGTGC
64 GGCCAGCAATATTGGACTTAAAGATGAAGGTGC
* *
1006567 CAATGTGCTGATTCAAGGCCAGCAACATTGGACTTACAAGTGAGGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-AA-TGAGGGTGCCAATATGCTGATTCAA
** * * * *
1006632 GGCCAGCAACGTTGGACTTATAGGTGAGGGTGT
64 GGCCAGCAATATTGGACTTAAAGATGAAGGTGC
* * * *
1006665 CAATGTGTTGATTCAAGGCCAACGACATTAGG-CTTAGGAATGTTAAAGATGCCAATATGCTGAT
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTA--AATG---AGGGTGCCAATATGCTGAT
*** ** * * *
1006729 TCAAGGCCAATGATATCAGACCTAAAGATGAAGATAC
60 TCAAGGCCAGCAATATTGGACTTAAAGATGAAGGTGC
*
1006766 CAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAA--A--GTGCCAATATGCTGATTCAAGG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGAGGGTGCCAATATGCTGATTCAAGG
* *
1006827 CCAGCGATATTGGACTTAAAGATGAAGATGC
66 CCAGCAATATTGGACTTAAAGATGAAGGTGC
* *
1006858 CAATGTGCTGATTCAAGGCCAGCGACATTGG--TTTAA--A-GGTGCTAATATGCTGATTCAAGG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGAGGGTGCCAATATGCTGATTCAAGG
1006918 CCAGCAATATTGGACTTAGAAGA
66 CCAGCAATATTGGACTTA-AAGA
1006941 AAATGCCACC
Statistics
Matches: 409, Mismatches: 51, Indels: 34
0.83 0.10 0.07
Matches are distributed among these distances:
90 5 0.01
91 38 0.09
92 80 0.20
94 1 0.00
98 167 0.41
99 10 0.02
100 4 0.01
101 77 0.19
102 27 0.07
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (96 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGAGGGTGCCAATATGCTGATTCAAGG
CCAGCAATATTGGACTTAAAGATGAAGGTGC
Found at i:1006616 original size:147 final size:148
Alignment explanation
Indices: 1006367--1006935 Score: 546
Period size: 147 Copynumber: 3.9 Consensus size: 148
1006357 AGAAGAATGA
* ** ** *
1006367 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATGCTAAT
1 CAATGTGCTGATTCAAGGCCAGCGACATTAGGACTTAAAGAT---GAAGATGCCAATATGCTGAT
* * *
1006432 TCAAGGCTAG-AGATATTGGACTTAAAGATGAAAGTGCCAATGAGCTGATTCAAGGCCAGCAACA
63 TCAAGGCCAGCA-ACATTGGACTTAAAGATGAAGGTGCCAATGAGCTGATTCAAGGCCAGCAACA
1006496 TTGGACTTAAAGGTGAGGGTGC
127 TTGGACTTAAAGGTGAGGGTGC
* * * * *
1006518 CAATGTGCTGATTCAAGGCCAGCAACATT-GGACTTAAAGGTGAGGGTGCCAATGTGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCGACATTAGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * *
1006582 AGGCCAGCAACATTGGACTTACAAG-TGAGGGTGCCAATGTGCTGATTCAAGGCCAGCAACGTTG
66 AGGCCAGCAACATTGGACTTA-AAGATGAAGGTGCCAATGAGCTGATTCAAGGCCAGCAACATTG
* *
1006646 GACTTATAGGTGAGGGTGT
130 GACTTAAAGGTGAGGGTGC
* * * *
1006665 CAATGTGTTGATTCAAGGCCAACGACATTAGG-CTTAGGAATGTTAAAGATGCCAATATGCTGAT
1 CAATGTGCTGATTCAAGGCCAGCGACATTAGGACTTA--AA-GATGAAGATGCCAATATGCTGAT
*** * ** * * * * *
1006729 TCAAGGCCAATGATATCAGACCTAAAGATGAAGATACCAATGTGCTGATTCAAGGCCAGCGACAT
63 TCAAGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATGAGCTGATTCAAGGCCAGCAACAT
*
1006794 TAGACTTAAA----A--GTGC
128 TGGACTTAAAGGTGAGGGTGC
* * *
1006809 CAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGATGAAGATGCCAATGTGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCGACATTAGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * *
1006873 AGGCCAGCGACATTGG--TT-----TAAAGGTGCTAAT-ATGCTGATTCAAGGCCAGCAATATTG
66 AGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATGA-GCTGATTCAAGGCCAGCAACATTG
1006930 GACTTA
130 GACTTA
1006936 GAAGAAAATG
Statistics
Matches: 349, Mismatches: 60, Indels: 35
0.79 0.14 0.08
Matches are distributed among these distances:
134 36 0.10
139 1 0.00
141 34 0.10
142 2 0.01
143 2 0.01
144 32 0.09
146 1 0.00
147 118 0.34
148 6 0.02
149 5 0.01
150 84 0.24
151 28 0.08
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (148 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTAGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
AGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATGAGCTGATTCAAGGCCAGCAACATTGG
ACTTAAAGGTGAGGGTGC
Found at i:1007022 original size:28 final size:29
Alignment explanation
Indices: 1006959--1007144 Score: 175
Period size: 29 Copynumber: 6.4 Consensus size: 29
1006949 CCAACTTGTA
** *
1006959 TGGGCTTTTGAAAGGGTTG-CACCAACTCG
1 TGGGCTTTTGAAA-GGTTGCCACTGACTTG
* * *
1006988 TGTGCTTTTG-AAGGTTGCCATTAACTTG
1 TGGGCTTTTGAAAGGTTGCCACTGACTTG
* * * *
1007016 TGGGCTTTTGAAAAGATACCACTGACTTA
1 TGGGCTTTTGAAAGGTTGCCACTGACTTG
1007045 TGGGCTTTTG-AAGGTTGCCACTGACTTG
1 TGGGCTTTTGAAAGGTTGCCACTGACTTG
* * *
1007073 TGGGC-TTTGAAAAAGATGCCATTGACTTG
1 TGGGCTTTTG-AAAGGTTGCCACTGACTTG
*
1007102 TGGGCTTTGGAAAAGAG-TGCCACTGACTTG
1 TGGGCTTTTG-AAAG-GTTGCCACTGACTTG
1007132 TGGGCTTTTGAAA
1 TGGGCTTTTGAAA
1007145 AGGTGAGGAA
Statistics
Matches: 129, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
27 9 0.07
28 37 0.29
29 54 0.42
30 28 0.22
31 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (29 bp):
TGGGCTTTTGAAAGGTTGCCACTGACTTG
Found at i:1007052 original size:57 final size:57
Alignment explanation
Indices: 1006991--1007146 Score: 208
Period size: 57 Copynumber: 2.7 Consensus size: 57
1006981 CAACTCGTGT
* *
1006991 GCTTTTGAAGGTTGCCATTAACTTGTGGGCTTTTGAAAAGATACCACTGACTTATGG
1 GCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACTTATGG
* * *
1007048 GCTTTTGAAGGTTGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCATTGACTTGTGG
1 GCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTG-AAAAGATACCACTGACTTATGG
*
1007105 GCTTTGGAAAAGAG-TGCCACTGACTTGTGGGCTTTTGAAAAG
1 GCTTTTG--AAG-GTTGCCACTGACTTGTGGGCTTTTGAAAAG
1007147 GTGAGGAATG
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
56 4 0.05
57 53 0.60
59 26 0.30
60 5 0.06
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (57 bp):
GCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACTTATGG
Found at i:1007123 original size:30 final size:29
Alignment explanation
Indices: 1007011--1007146 Score: 186
Period size: 29 Copynumber: 4.7 Consensus size: 29
1007001 GTTGCCATTA
*
1007011 ACTTGTGGGCTTTTGAAAAGATACCACTG
1 ACTTGTGGGCTTTTGAAAAGATGCCACTG
* * *
1007040 ACTTATGGGCTTTTG-AAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGATGCCACTG
*
1007068 ACTTGTGGGC-TTTGAAAAAGATGCCATTG
1 ACTTGTGGGCTTTTG-AAAAGATGCCACTG
*
1007097 ACTTGTGGGCTTTGGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGA-TGCCACTG
1007127 ACTTGTGGGCTTTTGAAAAG
1 ACTTGTGGGCTTTTGAAAAG
1007147 GTGAGGAATG
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
27 4 0.04
28 19 0.21
29 40 0.43
30 29 0.32
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (29 bp):
ACTTGTGGGCTTTTGAAAAGATGCCACTG
Found at i:1008587 original size:7 final size:7
Alignment explanation
Indices: 1008573--1008624 Score: 65
Period size: 7 Copynumber: 7.9 Consensus size: 7
1008563 ATCCGGACCC
1008573 TTTTTGT
1 TTTTTGT
*
1008580 TGTTTGT
1 TTTTTGT
1008587 TTTTT-T
1 TTTTTGT
1008593 TTTTTGT
1 TTTTTGT
1008600 TTTTTG-
1 TTTTTGT
1008606 -TTTTGT
1 TTTTTGT
*
1008612 TTTTTTT
1 TTTTTGT
1008619 TTTTTG
1 TTTTTG
1008625 CGGAGGACGC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
5 5 0.13
6 6 0.16
7 27 0.71
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (7 bp):
TTTTTGT
Found at i:1008602 original size:12 final size:12
Alignment explanation
Indices: 1008582--1008621 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
1008572 CTTTTTGTTG
1008582 TTTGTTTTTTTTT
1 TTTG-TTTTTTTT
*
1008595 TTTGTTTTTTGT
1 TTTGTTTTTTTT
1008607 TTTGTTTTTTTT
1 TTTGTTTTTTTT
1008619 TTT
1 TTT
1008622 TTGCGGAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (12 bp):
TTTGTTTTTTTT
Found at i:1008610 original size:25 final size:27
Alignment explanation
Indices: 1008573--1008622 Score: 86
Period size: 25 Copynumber: 1.9 Consensus size: 27
1008563 ATCCGGACCC
1008573 TTTTTGTTGTTTGTTTTTTTTTTTTGT
1 TTTTTGTTGTTTGTTTTTTTTTTTTGT
1008600 TTTTTG-T-TTTGTTTTTTTTTTTT
1 TTTTTGTTGTTTGTTTTTTTTTTTT
1008623 TGCGGAGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 16 0.70
26 1 0.04
27 6 0.26
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (27 bp):
TTTTTGTTGTTTGTTTTTTTTTTTTGT
Found at i:1008622 original size:20 final size:20
Alignment explanation
Indices: 1008573--1008624 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
1008563 ATCCGGACCC
*
1008573 TTTTTGTTGTTTGTTTTTTT
1 TTTTTGTTTTTTGTTTTTTT
*
1008593 TTTTTGTTTTTTGTTTTGTT
1 TTTTTGTTTTTTGTTTTTTT
1008613 TTTTT-TTTTTTG
1 TTTTTGTTTTTTG
1008625 CGGAGGACGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (20 bp):
TTTTTGTTTTTTGTTTTTTT
Found at i:1022578 original size:33 final size:33
Alignment explanation
Indices: 1022541--1022619 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
1022531 AAATTCCCAG
* *
1022541 ATGTATCAATACAAAGATCACTGTATCGATACA
1 ATGTATCGATACAAAGATCAATGTATCGATACA
*
1022574 ATGTATCGATACAAAGATCAATGTATCGATATA
1 ATGTATCGATACAAAGATCAATGTATCGATACA
1022607 ATGTATCGATACA
1 ATGTATCGATACA
1022620 TTTCTTTGGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGATCAATGTATCGATACA
Found at i:1022580 original size:13 final size:13
Alignment explanation
Indices: 1022562--1022619 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
1022552 CAAAGATCAC
1022562 TGTATCGATACAA
1 TGTATCGATACAA
1022575 TGTATCGATACAA
1 TGTATCGATACAA
1022588 ---A--GAT-CAA
1 TGTATCGATACAA
*
1022595 TGTATCGATATAA
1 TGTATCGATACAA
1022608 TGTATCGATACA
1 TGTATCGATACA
1022620 TTTCTTTGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
10 2 0.05
12 3 0.08
13 26 0.70
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1022686 original size:32 final size:32
Alignment explanation
Indices: 1022643--1022713 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
1022633 AGCTTTGTAG
* *
1022643 CAATACATTGTATCGATATAACACTTATGTAT
1 CAATACATTGTATCGATACAACACTTATGCAT
*
1022675 CGATACATTGTATCGATACAACACTTATGCAT
1 CAATACATTGTATCGATACAACACTTATGCAT
1022707 CAATACA
1 CAATACA
1022714 ATTACTGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (32 bp):
CAATACATTGTATCGATACAACACTTATGCAT
Found at i:1022688 original size:13 final size:13
Alignment explanation
Indices: 1022670--1022694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1022660 ATAACACTTA
1022670 TGTATCGATACAT
1 TGTATCGATACAT
1022683 TGTATCGATACA
1 TGTATCGATACA
1022695 ACACTTATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1022735 original size:21 final size:19
Alignment explanation
Indices: 1022650--1022735 Score: 58
Period size: 19 Copynumber: 4.7 Consensus size: 19
1022640 TAGCAATACA
*
1022650 TTGTATCGATATAACACTT
1 TTGTATCGATACAACACTT
*
1022669 ATGTATCGAT---ACA---
1 TTGTATCGATACAACACTT
1022682 TTGTATCGATACAACACTT
1 TTGTATCGATACAACACTT
* * * *
1022701 ATGCATCAATACAATTACTGT
1 TTGTATCGATACAA-CACT-T
1022722 TTGTATCGATACAA
1 TTGTATCGATACAA
1022736 ATTGTTGAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
13 9 0.18
16 6 0.12
19 20 0.40
20 3 0.06
21 12 0.24
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACAACACTT
Found at i:1022801 original size:21 final size:20
Alignment explanation
Indices: 1022772--1022810 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
1022762 GTTGGGACCT
1022772 TGTACCGATACATTCTAGAAA
1 TGTACCGATACATT-TAGAAA
*
1022793 TGTATCGATACATTTAGA
1 TGTACCGATACATTTAGA
1022811 CAAAAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (20 bp):
TGTACCGATACATTTAGAAA
Found at i:1023589 original size:18 final size:18
Alignment explanation
Indices: 1023567--1023616 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
1023557 CTTTGCACTC
1023567 TTTTTTTGTGTTTTT-TT
1 TTTTTTTGTGTTTTTGTT
*
1023584 TGTTTTTGT-TATTTTGTT
1 TTTTTTTGTGT-TTTTGTT
1023602 TTTTTTTGTGTTTTT
1 TTTTTTTGTGTTTTT
1023617 ACTTATGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 1 0.04
17 12 0.43
18 14 0.50
19 1 0.04
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (18 bp):
TTTTTTTGTGTTTTTGTT
Found at i:1023598 original size:14 final size:12
Alignment explanation
Indices: 1023567--1023616 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
1023557 CTTTGCACTC
*
1023567 TTTTTTTG-TGT
1 TTTTTTTGTTTT
1023578 TTTTTTTGTTTT
1 TTTTTTTGTTTT
1023590 TGTTATTTTGTTTT
1 T-TT-TTTTGTTTT
*
1023604 TTTTTGTGTTTT
1 TTTTTTTGTTTT
1023616 T
1 T
1023617 ACTTATGACT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
11 8 0.24
12 12 0.35
13 4 0.12
14 10 0.29
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (12 bp):
TTTTTTTGTTTT
Found at i:1028430 original size:27 final size:27
Alignment explanation
Indices: 1028388--1028461 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
1028378 TTTGGTTGAA
*
1028388 AATAGGGTTGGAGTGTCCCCTCGGAGG
1 AATAGGGTTGGAGTGTCCCCTCAGAGG
*
1028415 AATGGGGTTGGAGTGTCCCCTCAGAGG
1 AATAGGGTTGGAGTGTCCCCTCAGAGG
*
1028442 AATAGGGTTAGAGTGTCCCC
1 AATAGGGTTGGAGTGTCCCC
1028462 GATGAATAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.38, T:0.23
Consensus pattern (27 bp):
AATAGGGTTGGAGTGTCCCCTCAGAGG
Found at i:1030766 original size:19 final size:19
Alignment explanation
Indices: 1030707--1030766 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
1030697 CATCGATACA
*
1030707 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ATTGT
* *
1030726 ATGTATCGATACATTTATTGT
1 TTGTATCGATACA--AATTGT
1030747 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAATTGT
1030766 T
1 T
1030767 GAAATTCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
19 18 0.55
20 2 0.06
21 13 0.39
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (19 bp):
TTGTATCGATACAAATTGT
Found at i:1032051 original size:32 final size:32
Alignment explanation
Indices: 1031966--1032739 Score: 732
Period size: 32 Copynumber: 24.1 Consensus size: 32
1031956 CCAGTGGATT
*
1031966 CAACCTCTTCTCTAAAGCCCATACAAG-CTGGTGG
1 CAACC-CTTCTC-AAAGCCCACACAAGTC-GGTGG
* *
1032000 CAACCCTTTTTCAAAGCCCACACAAGTCGGTGA
1 CAACCC-TTCTCAAAGCCCACACAAGTCGGTGG
* * * *
1032033 AAACCCTTCTCAAAGCCCACATAAGTTGGTGA
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
*
1032065 CAA-CCTTCTTCAAAGCCCACACAAGTCGATGG
1 CAACCCTTC-TCAAAGCCCACACAAGTCGGTGG
* *
1032097 CAACCCTTTTCAAAGCCCACACAAGTTGGTGG
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
* *
1032129 CAACCTTTCTCAAAGCCCACACAAGTTGGTGG
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
*
1032161 CAA-CCTTCTCTAAAGCCCACACAAGTTGGTGG
1 CAACCCTTCTC-AAAGCCCACACAAGTCGGTGG
** *
1032193 C-ACCCCCCTCCAAAGCCCACACAAGTCAGTGG
1 CAACCCTTCT-CAAAGCCCACACAAGTCGGTGG
*
1032225 GAA-CCTTCTCTAAAGCCCACACAAGTCGGTGG
1 CAACCCTTCTC-AAAGCCCACACAAGTCGGTGG
* * *
1032257 CACCCCCTTC-CAAAGCCTACACAAGTCAGTGG
1 CA-ACCCTTCTCAAAGCCCACACAAGTCGGTGG
* * * *
1032289 -AAACCTTCTTCAAAGCCTACACAAGTCAGTGA
1 CAACCCTTC-TCAAAGCCCACACAAGTCGGTGG
* *
1032321 TAA-CCTTCTTCAAAGCCCATACAAGTCGGTGG
1 CAACCCTTC-TCAAAGCCCACACAAGTCGGTGG
*
1032353 CAACCCTTCTCAAAGCCCACATAAGTCGGTGG
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
* * *
1032385 CAA-CTTTCTCTAAAGCCCACACAAGTCAGTAG
1 CAACCCTTCTC-AAAGCCCACACAAGTCGGTGG
* ***
1032417 CACCCCCTTC-CAAAGCCCACACAAGTTAATGG
1 CA-ACCCTTCTCAAAGCCCACACAAGTCGGTGG
* **
1032449 CAA-CCTTCTTTAAAGCCCACACAAGTCAATGG
1 CAACCCTTC-TCAAAGCCCACACAAGTCGGTGG
***
1032481 CAACCCTTCTCAAAGCCCACACAAGTTAATGG
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
* **
1032513 CAA-CCTTCTTTAAAGCCCACACAAGTCAATGG
1 CAACCCTTC-TCAAAGCCCACACAAGTCGGTGG
1032545 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
* * * *
1032577 CATTCTCTTC-GAAAGCCCACACAAGTTGGTGG
1 CA-ACCCTTCTCAAAGCCCACACAAGTCGGTGG
* *** *
1032609 CAA-CCTCCTTCAAAGCCCACACAAGTTAATAG
1 CAACCCTTC-TCAAAGCCCACACAAGTCGGTGG
* * *
1032641 CAACCTTTCTCAAAGCCCACACAAGCCTGTGG
1 CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
* * *
1032673 CAACCCCTCTCAAAAGCCCATACAAGTTGGTGG
1 CAACCCTTCTC-AAAGCCCACACAAGTCGGTGG
* *
1032706 CAACCCTT-TCAAAAGCCTACACAAGTTGGTGG
1 CAACCCTTCTC-AAAGCCCACACAAGTCGGTGG
1032738 CA
1 CA
1032740 TCTTATTCCA
Statistics
Matches: 626, Mismatches: 86, Indels: 58
0.81 0.11 0.08
Matches are distributed among these distances:
30 13 0.02
31 25 0.04
32 489 0.78
33 80 0.13
34 19 0.03
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (32 bp):
CAACCCTTCTCAAAGCCCACACAAGTCGGTGG
Found at i:1032924 original size:104 final size:103
Alignment explanation
Indices: 1032796--1033478 Score: 446
Period size: 104 Copynumber: 6.6 Consensus size: 103
1032786 ATTTATCAAA
* * * * * *
1032796 TTTTCTTTCTTTAAGT-TCGATATCGCTGGCCTTGAATCAGTATATTGGCACATTTACCATCTTT
1 TTTTCTTTC-TTAAGTCT-AATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTATCATCTTT
* * * *
1032860 AAGTCTAATGTCGCTAGTCTTAAATTAGCACATTGGCACAT
64 AAGTCCAATGTCGCT-GCCTTGAATCAGCACATTGGCACAT
* * * * *
1032901 TTTTCTTTCTTACGTCTAATATCGCTAGCCTAAAATCAGCATATTTGCGCCTTCATCATCTTTAA
1 TTTTCTTTCTTAAGTCTAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTATCATCTTTAA
* * * * *
1032966 GTCCAATATCGCTGGCTTTGAATCAACATATTAGCACAT
66 GTCCAATGTCGCT-GCCTTGAATCAGCACATTGGCACAT
* * * * *
1033005 TTTTCTTTCATAAGTCTAATATCGTTGGCCTTAAATCAACATATTGGTGCCTTTGTCATCTTTAA
1 TTTTCTTTCTTAAGTCTAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTATCATCTTTAA
* *
1033070 GTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACTT
66 GTCCAATGTCGCT-GCCTTGAATCAGCACATTGGCACAT
* * * ** *
1033109 TTTTCTTTCTTAAGTCCAATAACGCTGGCCTTAAATCAGCATATTGACATCTTTCA-CAT-TCCT
1 TTTTCTTTCTTAAGTCTAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTT-ATCATCT-TT
** * *
1033172 AAACCCAATGTCGTTGGCCTTGAATCAGTACATTGG--CAT
64 AAGTCCAATGTCGCT-GCCTTGAATCAGCACATTGGCACAT
* * * * * * * * * *
1033211 TCTTCTCATCTTCAAGTCTAATATCACTAGCCGTGAATCAGCACATTGGCACATTTATCATCCTT
1 TTTTCT-TTCTT-AAGTCTAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTATCATCTTT
* *
1033276 AAG-CCTAATATCACTAGCCTTGAATCAGCACATTGGCA-A-
64 AAGTCC-AATGTCGCT-GCCTTGAATCAGCACATTGGCACAT
* * * ** *
1033315 CTGTC-ATCTTTAAGT-TCAATATTTCTGGCCTTGAATCAGCATA-T---G--TATTATCATCTT
1 TTTTCTTTC-TTAAGTCT-AATATCGCTGGCCTTAAATCAGCATATTGGCGCCT-TTATCATCTT
* * * *
1033372 TAAGTCCAATGTTGCTAGCCGTGAATC-GACACATTAGCACCT
63 TAAGTCCAATGTCGCT-GCCTTGAATCAG-CACATTGGCACAT
* * * * * * * ** * * * *
1033414 TTATCATCCTTAAGTCCAATATTGCTAGCCTTGAATTGGCACATTAGCACCTTTATCATCATTAA
1 TTTTCTTTCTTAAGTCTAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTATCATCTTTAA
1033479 ATCAGATGTT
Statistics
Matches: 450, Mismatches: 103, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
96 2 0.00
97 38 0.08
98 2 0.00
99 30 0.07
100 2 0.00
101 2 0.00
102 35 0.08
103 10 0.02
104 317 0.70
105 12 0.03
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.37
Consensus pattern (103 bp):
TTTTCTTTCTTAAGTCTAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTATCATCTTTAA
GTCCAATGTCGCTGCCTTGAATCAGCACATTGGCACAT
Found at i:1032990 original size:52 final size:51
Alignment explanation
Indices: 1032803--1033358 Score: 273
Period size: 52 Copynumber: 10.7 Consensus size: 51
1032793 AAATTTTCTT
* * * * * **
1032803 TCTTTAAGTTCGATATCGCTGGCCTTGAATCAGTATATTGGCACATTTACC
1 TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * * * * *
1032854 ATCTTTAAGTCTAATGTCGCTAGTCTTAAATTAGCACATTGGCACATTTTTC
1 -TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * * * * * **
1032906 TTTCTTACGTCTAATATCGCTAGCCTAAAATCAGCATATTTGCGCCTTCATC
1 TCT-TTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * * *
1032958 ATCTTTAAGTCCAATATCGCTGGCTTTGAATCAACATATTAGCACATTTTTC
1 -TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * ** *
1033010 T-TTCATAAGTCTAATATCGTTGGCCTTAAATCAACATATTGGTGCCTTTGTC
1 TCTT--TAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * * *
1033062 ATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACTTTTTTC
1 -TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * *
1033114 TTTCTTAAGTCCAATAACGCTGGCCTTAAATCAGCATATT-G-ACATCTTTC
1 TCT-TTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* ** * * * * *
1033164 ACATTCCTAAACCCAATGTCGTTGGCCTTGAATCAGTACATTGGCA--TTCTTCTC
1 TC-TT--TAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTT-TT-TC
* * * * * * * * *
1033218 ATCTTCAAGTCTAATATCACTAGCCGTGAATCAGCACATTGGCACATTTATC
1 -TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* * * * * * *
1033270 ATCCTTAAG-CCTAATATCACTAGCCTTGAATCAGCACATTGGCAAC--TGTC
1 -TCTTTAAGTCC-AATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
* ** *
1033320 ATCTTTAAGTTCAATATTTCTGGCCTTGAATCAGCATAT
1 -TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATAT
1033359 GTATTATCAT
Statistics
Matches: 384, Mismatches: 101, Indels: 40
0.73 0.19 0.08
Matches are distributed among these distances:
50 44 0.11
51 9 0.02
52 314 0.82
53 7 0.02
54 9 0.02
55 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (51 bp):
TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTTTC
Found at i:1033346 original size:50 final size:51
Alignment explanation
Indices: 1033188--1033463 Score: 181
Period size: 52 Copynumber: 5.5 Consensus size: 51
1033178 AATGTCGTTG
* ** * *
1033188 GCCTTGAATCAGTACATTGGCATTCTTCTCATCTTCAAGTCTAATATCACTA
1 GCCTTGAATCAGCACATTGGCACAC-TATCATCTTTAAGTCTAATATCACTA
* * * *
1033240 GCCGTGAATCAGCACATTGGCACATTTATCATCCTTAAGCCTAATATCACTA
1 GCCTTGAATCAGCACATTGGCACA-CTATCATCTTTAAGTCTAATATCACTA
* ** *
1033292 GCCTTGAATCAGCACATTGGCA-ACTGTCATCTTTAAGT-TCAATATTTCTG
1 GCCTTGAATCAGCACATTGGCACACTATCATCTTTAAGTCT-AATATCACTA
* * * * * **
1033342 GCCTTGAATCAGCATA-T-G--TATTATCATCTTTAAGTCCAATGTTGCTA
1 GCCTTGAATCAGCACATTGGCACACTATCATCTTTAAGTCTAATATCACTA
* * * * **
1033389 GCCGTGAATC-GACACATTAGCAC-CTTTATCATCCTTAAGTCCAATATTGCTA
1 GCCTTGAATCAG-CACATTGGCACAC--TATCATCTTTAAGTCTAATATCACTA
** *
1033441 GCCTTGAATTGGCACATTAGCAC
1 GCCTTGAATCAGCACATTGGCAC
1033464 CTTTATCATC
Statistics
Matches: 180, Mismatches: 32, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
46 1 0.01
47 33 0.18
48 2 0.01
49 3 0.02
50 33 0.18
51 1 0.01
52 106 0.59
53 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
GCCTTGAATCAGCACATTGGCACACTATCATCTTTAAGTCTAATATCACTA
Found at i:1033497 original size:52 final size:52
Alignment explanation
Indices: 1033362--1033502 Score: 187
Period size: 52 Copynumber: 2.7 Consensus size: 52
1033352 AGCATATGTA
* *
1033362 TTATCATCTTTAAGTCCAATGTTGCTAGCCGTGAATCGACACATTAGCACCT
1 TTATCATCATTAAGTCCAATGTTGCTAGCCTTGAATCGACACATTAGCACCT
* * * *
1033414 TTATCATCCTTAAGTCCAATATTGCTAGCCTTGAATTGGCACATTAGCACCT
1 TTATCATCATTAAGTCCAATGTTGCTAGCCTTGAATCGACACATTAGCACCT
*
1033466 TTATCATCATTAAAT-CAGATGTTGC-AGGCCTTGAATC
1 TTATCATCATTAAGTCCA-ATGTTGCTA-GCCTTGAATC
1033503 TGTACACTAG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 3 0.04
52 75 0.96
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (52 bp):
TTATCATCATTAAGTCCAATGTTGCTAGCCTTGAATCGACACATTAGCACCT
Done.