Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold350

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1036165
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


File 8 of 8

Found at i:1035152 original size:22 final size:22

Alignment explanation


    Indices: 1035099--1035152  Score: 90
    Period size: 22  Copynumber: 2.5  Consensus size: 22

    1035089 GCCCATATTT

                     *    *       
    1035099 ATGCATTTTATGTCTTCATTCC
          1 ATGCATTTTGTGTCATCATTCC

                                  
    1035121 ATGCATTTTGTGTCATCATTCC
          1 ATGCATTTTGTGTCATCATTCC

                      
    1035143 ATGCATTTTG
          1 ATGCATTTTG

    1035153 ACATGTCCAA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  22   30  1.00

ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48


Consensus pattern (22 bp):   
ATGCATTTTGTGTCATCATTCC

Done.