Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold357
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 802879
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
File 3 of 6
Found at i:324985 original size:19 final size:20
Alignment explanation
Indices: 324955--324994 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
324945 ACACATAATT
324955 AAAATTACATTTAAAAATAA
1 AAAATTACATTTAAAAATAA
324975 AAAATTA-ATTTAAAAATAA
1 AAAATTACATTTAAAAATAA
324994 A
1 A
324995 TAAAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAATTACATTTAAAAATAA
Found at i:325419 original size:38 final size:37
Alignment explanation
Indices: 325367--325440 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 37
325357 TTAAATATAG
* *
325367 ATAAATTTAGATTTAA-CCTAAATAATTTAATAATTTTA
1 ATAAAATTAAATTTAATCCTAAAT-ATTT-ATAATTTTA
*
325405 ATAAAATTAAATTTAATCTTAAATATTTATAATTTT
1 ATAAAATTAAATTTAATCCTAAATATTTATAATTTT
325441 TTTAATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 8 0.25
38 18 0.56
39 6 0.19
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (37 bp):
ATAAAATTAAATTTAATCCTAAATATTTATAATTTTA
Found at i:325735 original size:2 final size:2
Alignment explanation
Indices: 325717--325756 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
325707 TAACACAATG
*
325717 AT AT A- AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
325757 CACACACTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:326217 original size:22 final size:20
Alignment explanation
Indices: 326191--326236 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
326181 TTTATTCAAG
326191 TTATATCAATAAAAATTATTAT
1 TTATATCAAT-AAAATTATT-T
*
326213 TTATATTAATAAAATTATTT
1 TTATATCAATAAAATTATTT
326233 TTAT
1 TTAT
326237 TTAAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.22
21 9 0.39
22 9 0.39
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TTATATCAATAAAATTATTT
Found at i:326285 original size:23 final size:24
Alignment explanation
Indices: 326238--326281 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
326228 TATTTTTATT
326238 TAAATATTTAATTATAAAAATATA
1 TAAATATTTAATTATAAAAATATA
326262 TAAATA-TTAA-TATAAAAATA
1 TAAATATTTAATTATAAAAATA
326282 ATATTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 4 0.20
24 6 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAATATTTAATTATAAAAATATA
Found at i:328623 original size:17 final size:17
Alignment explanation
Indices: 328601--328642 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
328591 AAGGTAAAAA
328601 AAAAAAAAAAAAGAAAG
1 AAAAAAAAAAAAGAAAG
*
328618 AAAAAAAGAAAAGAAAG
1 AAAAAAAAAAAAGAAAG
328635 AAGAAAAA
1 AA-AAAAA
328643 TATTGATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAGAAAG
Found at i:328999 original size:22 final size:22
Alignment explanation
Indices: 328974--329015 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
328964 TATTAAAAAT
328974 TATTTTTAT-ATTAATATTTATA
1 TATTTTTATAATTAA-ATTTATA
328996 TATTTTTATAATTAAATTTA
1 TATTTTTATAATTAAATTTA
329016 AATAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTTTTATAATTAAATTTATA
Found at i:331262 original size:37 final size:37
Alignment explanation
Indices: 331220--331292 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
331210 GTTTGATACA
* *
331220 TTTTTAGACATAGAT-ATAAAA-TTATAAATTTAAAAAC
1 TTTTTA-A-ATAGATAAAAAAATTTAAAAATTTAAAAAC
*
331257 TTTTTAAATATATAAAAAAATTTAAAAATTTAAAAA
1 TTTTTAAATAGATAAAAAAATTTAAAAATTTAAAAA
331293 TATCTATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
35 5 0.16
36 6 0.19
37 20 0.65
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (37 bp):
TTTTTAAATAGATAAAAAAATTTAAAAATTTAAAAAC
Found at i:331991 original size:16 final size:16
Alignment explanation
Indices: 331967--331997 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
331957 TACATATTTT
331967 TATTAAATATTTATTA
1 TATTAAATATTTATTA
*
331983 TATTTAATATTTATT
1 TATTAAATATTTATT
331998 TACTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTAAATATTTATTA
Found at i:335470 original size:15 final size:15
Alignment explanation
Indices: 335450--335498 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 15
335440 TACCATAATT
335450 TTAAAAATATAAATA
1 TTAAAAATATAAATA
335465 TT-AAAATATTAAAT-
1 TTAAAAATA-TAAATA
*
335479 TTAATAATATAAA-A
1 TTAAAAATATAAATA
335493 TTAAAA
1 TTAAAA
335499 TATTTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAAAATATAAATA
Found at i:345021 original size:20 final size:21
Alignment explanation
Indices: 344983--345024 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
344973 CCAAAGTTTC
*
344983 TAACATAAAATTGAATAAAAT
1 TAACATAAAAATGAATAAAAT
*
345004 TAACA-AAAAATGATTAAAAT
1 TAACATAAAAATGAATAAAAT
345024 T
1 T
345025 TTGAAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (21 bp):
TAACATAAAAATGAATAAAAT
Found at i:357163 original size:13 final size:13
Alignment explanation
Indices: 357145--357191 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
357135 CATGATTATT
357145 AATTATATTTTAA
1 AATTATATTTTAA
357158 AATTATATTTTATA
1 AATTATATTTTA-A
*
357172 AATT-T-TTTAAA
1 AATTATATTTTAA
357183 AATTATATT
1 AATTATATT
357192 AAATGAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 5 0.17
12 5 0.17
13 15 0.50
14 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AATTATATTTTAA
Found at i:357175 original size:27 final size:26
Alignment explanation
Indices: 357140--357210 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 26
357130 ATTATCATGA
*
357140 TTATTAATTATATTTTAAAATTATATT
1 TTATAAATT-TATTTTAAAATTATATT
*
357167 TTATAAATTT-TTTAAAAATTATATT
1 TTATAAATTTATTTTAAAATTATATT
** *
357192 AAATGAATTTATTTTAAAA
1 TTATAAATTTATTTTAAAA
357211 AATTAAAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 21 0.57
26 8 0.22
27 8 0.22
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (26 bp):
TTATAAATTTATTTTAAAATTATATT
Found at i:357188 original size:25 final size:25
Alignment explanation
Indices: 357152--357232 Score: 74
Period size: 25 Copynumber: 3.1 Consensus size: 25
357142 ATTAATTATA
357152 TTTT-AAAATTATATTTTATAAATT
1 TTTTAAAAATTATATTTTATAAATT
** *
357176 TTTTAAAAATTATATTAAATGAATTT
1 TTTTAAAAATTATATTTTAT-AAATT
*
357202 ATTTTAAAAAATTAAAATTTTATTAAATT
1 -TTTT-AAAAATT-ATATTTTA-TAAATT
357231 TT
1 TT
357233 ACTTGATAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
24 4 0.09
25 13 0.30
26 4 0.09
27 4 0.09
28 9 0.20
29 9 0.20
30 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (25 bp):
TTTTAAAAATTATATTTTATAAATT
Found at i:358485 original size:5 final size:5
Alignment explanation
Indices: 358475--358535 Score: 54
Period size: 5 Copynumber: 12.4 Consensus size: 5
358465 ATATGTTACG
* * * * *
358475 AATAT AATAT AAAAT AATTAA AATAT AATAA AATAT AAAAT AATTT AA-AT
1 AATAT AATAT AATAT AA-TAT AATAT AATAT AATAT AATAT AATAT AATAT
358525 AATAT AA-AT AA
1 AATAT AATAT AA
358536 AAAGTTTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
4 7 0.16
5 34 0.77
6 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (5 bp):
AATAT
Found at i:358504 original size:26 final size:24
Alignment explanation
Indices: 358475--358537 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 24
358465 ATATGTTACG
358475 AATATAATATAAAATAATTAAAATAT
1 AATATAATATAAAATAATT-AAA-AT
* *
358501 AATAAAATATAAAATAATTTAAAT
1 AATATAATATAAAATAATTAAAAT
358525 AATATAA-ATAAAA
1 AATATAATATAAAA
358538 AGTTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 6 0.18
24 8 0.24
25 2 0.06
26 18 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (24 bp):
AATATAATATAAAATAATTAAAAT
Found at i:358523 original size:10 final size:10
Alignment explanation
Indices: 358478--358532 Score: 57
Period size: 9 Copynumber: 6.0 Consensus size: 10
358468 TGTTACGAAT
358478 ATAATATAAA
1 ATAATATAAA
358488 ATAAT-TAAA
1 ATAATATAAA
*
358497 AT-ATA-ATA
1 ATAATATAAA
358505 A-AATATAAA
1 ATAATATAAA
*
358514 ATAAT-TTAA
1 ATAATATAAA
358523 ATAATATAAA
1 ATAATATAAA
358533 TAAAAAGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
8 8 0.22
9 17 0.47
10 11 0.31
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
ATAATATAAA
Found at i:358560 original size:27 final size:24
Alignment explanation
Indices: 358476--358563 Score: 81
Period size: 27 Copynumber: 3.5 Consensus size: 24
358466 TATGTTACGA
*
358476 ATATAATAT-AAAATAATTAAAAT
1 ATATAAAATAAAAATAATTAAAAT
*
358499 ATAATAAAATATAAAATAATTTAAAT
1 AT-ATAAAATA-AAAATAATTAAAAT
*
358525 A-ATATAAATAAAAAGTTTTATTAAAAT
1 ATATA-AAATAAAAA---TAATTAAAAT
358552 ATATAAAATAAA
1 ATATAAAATAAA
358564 TTATTTATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
23 2 0.04
24 13 0.25
25 5 0.09
26 14 0.26
27 16 0.30
28 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (24 bp):
ATATAAAATAAAAATAATTAAAAT
Found at i:359616 original size:16 final size:17
Alignment explanation
Indices: 359597--359629 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
359587 ATAAATATTA
*
359597 AATATAATTA-ATAATT
1 AATAAAATTATATAATT
359613 AATAAAATTATATAATT
1 AATAAAATTATATAATT
359630 GACTTGATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATAAAATTATATAATT
Found at i:366902 original size:30 final size:31
Alignment explanation
Indices: 366854--366924 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
366844 GAGCTAAATT
*
366854 AAATTCAATTTGGATTTGGCTAGTAGCTAGC
1 AAATTCAATTTGGATTTGGCTAGCAGCTAGC
* *
366885 AAATTCAATTT-GATTTGGCTGGCGGCTAGC
1 AAATTCAATTTGGATTTGGCTAGCAGCTAGC
*
366915 AAATTTAATT
1 AAATTCAATT
366925 GGCAAATTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 25 0.69
31 11 0.31
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.37
Consensus pattern (31 bp):
AAATTCAATTTGGATTTGGCTAGCAGCTAGC
Found at i:368134 original size:31 final size:31
Alignment explanation
Indices: 368085--368166 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
368075 CGAGTCAAAT
* * **
368085 CAAATTCAATTTTTATTTGGCTGGTGGTTAG
1 CAAATTCAATTTGTATTTGGCTGGCGACTAG
* * *
368116 TAAATTCAATTTGGATTTGACTGGCGACTAG
1 CAAATTCAATTTGTATTTGGCTGGCGACTAG
*
368147 CAAATTCAAATTGTATTTGG
1 CAAATTCAATTTGTATTTGG
368167 TAACCGCGAG
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (31 bp):
CAAATTCAATTTGTATTTGGCTGGCGACTAG
Found at i:369412 original size:2 final size:2
Alignment explanation
Indices: 369405--369433 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
369395 TAGTCACTCT
369405 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
369434 GACATGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:370563 original size:23 final size:23
Alignment explanation
Indices: 370520--370564 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
370510 ATTTTAAATA
*
370520 TATAAATTATATACTGCATGAAT
1 TATAAATTATATACTACATGAAT
*
370543 TATAAATATATATA-TATATGAA
1 TATAAAT-TATATACTACATGAA
370565 CAAAAAGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (23 bp):
TATAAATTATATACTACATGAAT
Found at i:370990 original size:19 final size:21
Alignment explanation
Indices: 370968--371007 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
370958 AATATGACAT
370968 AATACAA-AAAAATA-ATAAA
1 AATACAATAAAAATATATAAA
*
370987 AATATAATAAAAATATATAAA
1 AATACAATAAAAATATATAAA
371008 TGTGATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 7 0.39
21 5 0.28
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (21 bp):
AATACAATAAAAATATATAAA
Found at i:370993 original size:11 final size:11
Alignment explanation
Indices: 370973--371007 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
370963 GACATAATAC
*
370973 AAAAAAATAAT
1 AAAAATATAAT
370984 AAAAATATAAT
1 AAAAATATAAT
370995 AAAAATAT-AT
1 AAAAATATAAT
371005 AAA
1 AAA
371008 TGTGATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 5 0.22
11 18 0.78
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAATATAAT
Found at i:371422 original size:5 final size:5
Alignment explanation
Indices: 371415--371449 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
371405 TAGTAAATTA
*
371415 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
371450 TTGTGTGCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:371802 original size:29 final size:30
Alignment explanation
Indices: 371742--371806 Score: 114
Period size: 29 Copynumber: 2.2 Consensus size: 30
371732 TTTAATCTAA
*
371742 TTTATTGTTTATATAATAAAAAATAATTTT
1 TTTATTGTTTATATAATAAAAAATAAATTT
371772 TTTATTGTTTATATAAT-AAAAATAAATTT
1 TTTATTGTTTATATAATAAAAAATAAATTT
371801 TTTATT
1 TTTATT
371807 TAAATTTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (30 bp):
TTTATTGTTTATATAATAAAAAATAAATTT
Found at i:372851 original size:12 final size:12
Alignment explanation
Indices: 372836--372872 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
372826 AAAAAAAATT
372836 ATTTAAAATTTA
1 ATTTAAAATTTA
372848 ATTTTAAAA-TTA
1 A-TTTAAAATTTA
372860 A-TTAAAATTTA
1 ATTTAAAATTTA
372871 AT
1 AT
372873 GTAACGATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 6 0.27
11 4 0.18
12 5 0.23
13 7 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTTAAAATTTA
Found at i:373759 original size:20 final size:20
Alignment explanation
Indices: 373718--373754 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
373708 TTCGATTGAG
373718 TATTTATAAATATTTTTAAT
1 TATTTATAAATATTTTTAAT
373738 TATTT-TAAAT-TTTTTAA
1 TATTTATAAATATTTTTAA
373755 AATTAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTATAAATATTTTTAAT
Found at i:373772 original size:20 final size:21
Alignment explanation
Indices: 373749--373787 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
373739 ATTTTAAATT
373749 TTTTAAAAT-TAAATAAAAAA
1 TTTTAAAATATAAATAAAAAA
*
373769 TTTTAAAATATTAATAAAA
1 TTTTAAAATATAAATAAAA
373788 TTACAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TTTTAAAATATAAATAAAAAA
Found at i:374464 original size:22 final size:20
Alignment explanation
Indices: 374432--374471 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
374422 TTAAAATTAT
*
374432 TAAAAAATATTTTTAAAAAA
1 TAAAAAATATTTATAAAAAA
374452 TAAAAAATTTATTTATAAAA
1 TAAAAAA--TATTTATAAAA
374472 GTTTTTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAAAATATTTATAAAAAA
Found at i:374466 original size:20 final size:21
Alignment explanation
Indices: 374432--374471 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
374422 TTAAAATTAT
374432 TAAAAAATATTTTTA-AAAAA
1 TAAAAAATATTTTTATAAAAA
374452 TAAAAAAT-TTATTTATAAAA
1 TAAAAAATATT-TTTATAAAA
374472 GTTTTTAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 12 0.67
21 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAAAATATTTTTATAAAAA
Found at i:376767 original size:21 final size:19
Alignment explanation
Indices: 376707--376785 Score: 69
Period size: 16 Copynumber: 4.2 Consensus size: 19
376697 AATGTTTTTA
376707 TAAATTATTTA-TTACAT-T
1 TAAATTATTTATTTA-ATAT
*
376725 T--ATTAGTTATTTAATAT
1 TAAATTATTTATTTAATAT
376742 TAAATTATTTATTCTAATATT
1 TAAATTATTTATT-TAATA-T
376763 TAAATTATTTTAATTTAA-AT
1 TAAATTA-TTT-ATTTAATAT
376783 TAA
1 TAA
376786 TCAATCAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
16 9 0.18
17 5 0.10
18 1 0.02
19 9 0.18
20 9 0.18
21 9 0.18
22 6 0.12
23 3 0.06
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.56
Consensus pattern (19 bp):
TAAATTATTTATTTAATAT
Found at i:380381 original size:39 final size:35
Alignment explanation
Indices: 380327--380406 Score: 88
Period size: 39 Copynumber: 2.2 Consensus size: 35
380317 TAAATTTTTG
* **
380327 AATAATTTAATTTAAATTAAATAATTATTTAATAATAAA
1 AATATTTTAATTTAAATT---TAATTATAAAATAA-AAA
*
380366 AATATTTTTATTTAAATTTAATTATAAAATAAAAA
1 AATATTTTAATTTAAATTTAATTATAAAATAAAAA
380401 AATATT
1 AATATT
380407 CATATAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 9 0.24
36 12 0.32
39 16 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (35 bp):
AATATTTTAATTTAAATTTAATTATAAAATAAAAA
Found at i:380548 original size:3 final size:3
Alignment explanation
Indices: 380542--380587 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
380532 CTCTAACAAC
380542 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
380588 TTATTATTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:381118 original size:35 final size:36
Alignment explanation
Indices: 381079--381156 Score: 113
Period size: 35 Copynumber: 2.2 Consensus size: 36
381069 ATGCAAACAA
* *
381079 AATTAAAAAATCGAATTGAATTGATTGATTAAA-TC
1 AATTAAAAAATCAAATTGAATCGATTGATTAAATTC
* *
381114 AATTAAAAAATCAAATTTAATCGATTGATTAAATTG
1 AATTAAAAAATCAAATTGAATCGATTGATTAAATTC
381150 AATTAAA
1 AATTAAA
381157 TCAATTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
35 30 0.79
36 8 0.21
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (36 bp):
AATTAAAAAATCAAATTGAATCGATTGATTAAATTC
Found at i:381147 original size:23 final size:23
Alignment explanation
Indices: 381106--381165 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 23
381096 GAATTGATTG
**
381106 ATTAAATCAATT-AAAAAATCAA
1 ATTAAATCAATTGATTAAATCAA
* * **
381128 ATTTAATCGATTGATTAAATTGA
1 ATTAAATCAATTGATTAAATCAA
381151 ATTAAATCAATTGAT
1 ATTAAATCAATTGAT
381166 ATATTGATTA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (23 bp):
ATTAAATCAATTGATTAAATCAA
Found at i:381219 original size:18 final size:17
Alignment explanation
Indices: 381192--381227 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
381182 TTATGACTTG
381192 AATCAATTGATTAAATT
1 AATCAATTGATTAAATT
381209 AATCGAATTGATTAAATT
1 AATC-AATTGATTAAATT
381227 A
1 A
381228 GGTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (17 bp):
AATCAATTGATTAAATT
Found at i:382318 original size:2 final size:2
Alignment explanation
Indices: 382311--382343 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
382301 TATAAATTCC
382311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
382344 GTCATGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:383727 original size:25 final size:25
Alignment explanation
Indices: 383669--383727 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
383659 AACACCTAAA
383669 AAATTTTAAACTATATTTTTTCATC
1 AAATTTTAAACTATATTTTTTCATC
383694 AAACGTTTTAAA-TAT-TTTTTTCATTCC
1 AAA--TTTTAAACTATATTTTTTCA-T-C
383721 AAATTTT
1 AAATTTT
383728 TTTTCCACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
25 15 0.50
26 4 0.13
27 11 0.37
ACGTcount: A:0.34, C:0.12, G:0.02, T:0.53
Consensus pattern (25 bp):
AAATTTTAAACTATATTTTTTCATC
Found at i:384140 original size:2 final size:2
Alignment explanation
Indices: 384133--384173 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
384123 TCCATGGAAG
384133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
384174 AGCTTTTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:385584 original size:2 final size:2
Alignment explanation
Indices: 385577--385619 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
385567 TTAATCAAAT
* *
385577 TA TA TA TA TA TA TA TA TA GA TA TA TA TA AA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
385619 T
1 T
385620 TTACAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:386855 original size:15 final size:15
Alignment explanation
Indices: 386835--386880 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
386825 ATGTAGTTTA
*
386835 ATTAAATATATATTT
1 ATTAAATATTTATTT
386850 ATTAAATATTTATTT
1 ATTAAATATTTATTT
*
386865 ATTTAATATTTATTT
1 ATTAAATATTTATTT
386880 A
1 A
386881 ATTTATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTAAATATTTATTT
Found at i:387066 original size:5 final size:5
Alignment explanation
Indices: 387056--387083 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
387046 CTTTTGCCTT
387056 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
387084 ACTTTCTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:387331 original size:13 final size:13
Alignment explanation
Indices: 387315--387344 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
387305 TTAGTTATAT
387315 TTTTAAAAAATAA
1 TTTTAAAAAATAA
*
387328 TTTTAAAGAATAA
1 TTTTAAAAAATAA
387341 TTTT
1 TTTT
387345 TTATTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TTTTAAAAAATAA
Found at i:387362 original size:16 final size:17
Alignment explanation
Indices: 387337--387369 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
387327 ATTTTAAAGA
387337 ATAAT-TTTTTATTTTT
1 ATAATATTTTTATTTTT
387353 ATAATATTTTTATTTTT
1 ATAATATTTTTATTTTT
387370 TTATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATAATATTTTTATTTTT
Found at i:387363 original size:18 final size:18
Alignment explanation
Indices: 387340--387403 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 18
387330 TTAAAGAATA
387340 ATTTTTTATTTTTATAAT
1 ATTTTTTATTTTTATAAT
*
387358 ATTTTTATTTTTTTATAAAT
1 ATTTTT-TATTTTTAT-AAT
* *
387378 ATTTATTGATTATTTTTAAT
1 ATTT-TTTATT-TTTATAAT
387398 -TTTTTT
1 ATTTTTT
387404 TTAAAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
18 8 0.22
19 11 0.30
20 12 0.32
21 6 0.16
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTTTTATTTTTATAAT
Found at i:387378 original size:20 final size:22
Alignment explanation
Indices: 387345--387395 Score: 72
Period size: 20 Copynumber: 2.4 Consensus size: 22
387335 GAATAATTTT
387345 TTATTTTTATAATATTT-TT-A
1 TTATTTTTATAATATTTATTGA
387365 TT-TTTTTATAAATATTTATTGA
1 TTATTTTTAT-AATATTTATTGA
387387 TTATTTTTA
1 TTATTTTTA
387396 ATTTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.26
20 9 0.33
21 2 0.07
22 3 0.11
23 6 0.22
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
TTATTTTTATAATATTTATTGA
Found at i:388624 original size:20 final size:19
Alignment explanation
Indices: 388588--388649 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
388578 TTTAATTCGT
388588 AAATTTATTTAATTAT-TTAA
1 AAATTTATTT--TTATATTAA
388608 AAATTTATTTTTATATTAA
1 AAATTTATTTTTATATTAA
*
388627 TAATTATATATTTTATAATTAA
1 AAATT-TAT-TTTTAT-ATTAA
388649 A
1 A
388650 TTTAAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 4 0.11
19 8 0.22
20 13 0.36
21 6 0.17
22 5 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATTTATTTTTATATTAA
Found at i:389899 original size:2 final size:2
Alignment explanation
Indices: 389892--389926 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
389882 ACAGATGGGC
389892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
389927 AACTATAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:390629 original size:14 final size:14
Alignment explanation
Indices: 390589--390629 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
390579 TTTATGATTT
390589 AATATTTAAAGA-TA
1 AATATTTAAA-ATTA
*
390603 AATATTTATAATTA
1 AATATTTAAAATTA
390617 AATATTTAAAATT
1 AATATTTAAAATT
390630 TATTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 1 0.04
14 23 0.96
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
AATATTTAAAATTA
Found at i:391532 original size:11 final size:11
Alignment explanation
Indices: 391510--391551 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
391500 TCCTAAGTTT
391510 ATATTATTTTAA
1 ATATT-TTTTAA
391522 ATATTTTTTAA
1 ATATTTTTTAA
391533 ATA--TTTTAA
1 ATATTTTTTAA
*
391542 ATAATTTTTA
1 ATATTTTTTA
391552 TTACTGAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.32
11 14 0.50
12 5 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTTTTTAA
Found at i:391539 original size:20 final size:20
Alignment explanation
Indices: 391514--391551 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
391504 AAGTTTATAT
*
391514 TATTTTAAATATTTTTTAAA
1 TATTTTAAATAATTTTTAAA
391534 TATTTTAAATAATTTTTA
1 TATTTTAAATAATTTTTA
391552 TTACTGAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTTAAATAATTTTTAAA
Found at i:393493 original size:32 final size:34
Alignment explanation
Indices: 393415--393495 Score: 96
Period size: 32 Copynumber: 2.4 Consensus size: 34
393405 CAAAAACCTA
* **
393415 TTTATTATTTAAAATATTTAAAAATTATTTTATAT
1 TTTATTATTT-AAATATTTAAAAATAAAATTATAT
*
393450 TTTA-TAATTAAATATTT-AAAATAAAATTAT-T
1 TTTATTATTTAAATATTTAAAAATAAAATTATAT
393481 TTTATTATTTAAATA
1 TTTATTATTTAAATA
393496 ATAATTCATT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
31 5 0.12
32 19 0.47
33 8 0.20
34 4 0.10
35 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (34 bp):
TTTATTATTTAAATATTTAAAAATAAAATTATAT
Found at i:394185 original size:17 final size:18
Alignment explanation
Indices: 394163--394204 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
394153 ATTTAATTAT
*
394163 AAAATATATATTAATA-A
1 AAAATAAATATTAATATA
394180 AAAATAAATATTAATATA
1 AAAATAAATATTAATATA
394198 AAAATAA
1 AAAATAA
394205 TTTTAAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATAAATATTAATATA
Found at i:394210 original size:17 final size:17
Alignment explanation
Indices: 394151--394210 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
394141 AATTTTATTT
394151 TAAT-TTAAT-TATAAAA
1 TAATATTAATATA-AAAA
394167 TATATATTAATA-AAAAA
1 TA-ATATTAATATAAAAA
394184 TAAATATTAATATAAAAA
1 T-AATATTAATATAAAAA
*
394202 TAATTTTAA
1 TAATATTAA
394211 GCAATGAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
16 2 0.05
17 23 0.61
18 13 0.34
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAATATTAATATAAAAA
Found at i:394632 original size:5 final size:5
Alignment explanation
Indices: 394622--394646 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
394612 ATATATCTAT
394622 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
394647 TTATTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:395065 original size:2 final size:2
Alignment explanation
Indices: 395060--395086 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
395050 TATATAAAAG
395060 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
395087 CTTCGTTATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:397224 original size:20 final size:20
Alignment explanation
Indices: 397196--397242 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
397186 TTTTCATTGC
* *
397196 ACTAGAAATCATCAAATTTA
1 ACTATAAATCATCAAATTCA
* *
397216 ACTATAAATGATTAAATTCA
1 ACTATAAATCATCAAATTCA
397236 A-TATAAA
1 ACTATAAA
397243 AGTATTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (20 bp):
ACTATAAATCATCAAATTCA
Found at i:399138 original size:2 final size:2
Alignment explanation
Indices: 399131--399163 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
399121 CCCACACTCA
*
399131 AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
399164 AGAAAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:401550 original size:13 final size:13
Alignment explanation
Indices: 401532--401556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
401522 TTATTATAAA
401532 AAAATTCAAATTC
1 AAAATTCAAATTC
401545 AAAATTCAAATT
1 AAAATTCAAATT
401557 TATTTTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTCAAATTC
Found at i:402463 original size:3 final size:3
Alignment explanation
Indices: 402455--402492 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
402445 GAACAAAATT
402455 ATA ATA ATA ATA ATA AT- ATA ATA ATTA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA AT
402493 GCTTGTGCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:403966 original size:2 final size:2
Alignment explanation
Indices: 403959--403988 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
403949 ACTTGATGAG
*
403959 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
403989 GTAACAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:404170 original size:3 final size:3
Alignment explanation
Indices: 404162--404205 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
404152 TTTTAAGTGC
404162 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
404206 AGGACCCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:406384 original size:21 final size:21
Alignment explanation
Indices: 406359--406417 Score: 55
Period size: 23 Copynumber: 2.7 Consensus size: 21
406349 TGAGATAAAA
406359 AAATTATAAATATTAAAATTT
1 AAATTATAAATATTAAAATTT
* *
406380 AAATTCTAAATCTATTAAATTTT
1 AAATTATAAA--TATTAAAATTT
** *
406403 ATCTTATAAAAATTA
1 AAATTATAAATATTA
406418 TTACATAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 13 0.43
23 17 0.57
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATTATAAATATTAAAATTT
Found at i:406452 original size:18 final size:19
Alignment explanation
Indices: 406431--406469 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
406421 CATAAATTAA
*
406431 TTAAATTAAAT-TTTAAAT
1 TTAAATCAAATATTTAAAT
406449 TTAAATCAAATATTTAAAT
1 TTAAATCAAATATTTAAAT
406468 TT
1 TT
406470 TGAAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAAATCAAATATTTAAAT
Found at i:411053 original size:21 final size:22
Alignment explanation
Indices: 411029--411071 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
411019 AATTAAGGAG
*
411029 ATTTAT-ATTTTAAATTTTTTT
1 ATTTATAATTTGAAATTTTTTT
*
411050 ATTTATAATTTGGAATTTTTTT
1 ATTTATAATTTGAAATTTTTTT
411072 TTAAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
ATTTATAATTTGAAATTTTTTT
Found at i:411309 original size:7 final size:7
Alignment explanation
Indices: 411297--411339 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
411287 AAATAATAAT
411297 TATTATA
1 TATTATA
411304 TATTATA
1 TATTATA
*
411311 TATAATA
1 TATTATA
*
411318 -ATTAAA
1 TATTATA
411324 TATTTATA
1 TA-TTATA
411332 TATTATA
1 TATTATA
411339 T
1 T
411340 CTTAATAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
6 4 0.13
7 20 0.67
8 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
TATTATA
Found at i:411315 original size:20 final size:19
Alignment explanation
Indices: 411292--411337 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
411282 TTAAAAAATA
*
411292 ATAATTATTATATATTATAT
1 ATAATTATTAAATATT-TAT
*
411312 ATAATAATTAAATATTTAT
1 ATAATTATTAAATATTTAT
411331 AT-ATTAT
1 ATAATTAT
411338 ATCTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 5 0.22
20 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATAATTATTAAATATTTAT
Found at i:411317 original size:26 final size:28
Alignment explanation
Indices: 411288--411348 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
411278 TTTTTTAAAA
*
411288 AATAATAATTA-TTATATATTATAT-AT
1 AATAATAAATATTTATATATTATATCAT
*
411314 AATAATTAAATATTTATATATTATATCTT
1 AATAA-TAAATATTTATATATTATATCAT
411343 AATAAT
1 AATAAT
411349 TTATACTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 5 0.17
27 5 0.17
28 14 0.47
29 6 0.20
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (28 bp):
AATAATAAATATTTATATATTATATCAT
Found at i:411319 original size:23 final size:21
Alignment explanation
Indices: 411289--411334 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
411279 TTTTTAAAAA
*
411289 ATAATAATTATTATATATTATAT
1 ATAATAATTA-AATAT-TTATAT
411312 ATAATAATTAAATATTTATAT
1 ATAATAATTAAATATTTATAT
411333 AT
1 AT
411335 TATATCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
22 4 0.18
23 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAATAATTAAATATTTATAT
Found at i:420040 original size:29 final size:30
Alignment explanation
Indices: 420007--420068 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
419997 GATTTGTTTT
* *
420007 TTATC-TGGTTTCACCGGATTTCGAGCCTG
1 TTATCATGGTTTCACCGGATTACGAACCTG
* *
420036 TTATCATGTTTTCACTGGATTACGAACCTG
1 TTATCATGGTTTCACCGGATTACGAACCTG
420066 TTA
1 TTA
420069 AACTAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (30 bp):
TTATCATGGTTTCACCGGATTACGAACCTG
Found at i:421091 original size:25 final size:26
Alignment explanation
Indices: 421063--421116 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
421053 TATAGTTATA
*
421063 TATAACTTT-T-AATTTATTAATAATT
1 TATAACTTTATAAATTT-TTAAAAATT
*
421088 TAT-ATTTTATAAATTTTTAAAAATT
1 TATAACTTTATAAATTTTTAAAAATT
421113 TATA
1 TATA
421117 TTATATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
24 4 0.17
25 15 0.62
26 5 0.21
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (26 bp):
TATAACTTTATAAATTTTTAAAAATT
Found at i:421126 original size:11 final size:11
Alignment explanation
Indices: 421110--421145 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
421100 ATTTTTAAAA
421110 ATTTATATTAT
1 ATTTATATTAT
421121 ATTTATATTAT
1 ATTTATATTAT
* *
421132 AATTATATTTT
1 ATTTATATTAT
421143 ATT
1 ATT
421146 ATTTTTTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTTATATTAT
Found at i:421204 original size:20 final size:18
Alignment explanation
Indices: 421157--421205 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
421147 TTTTTTATGT
*
421157 TATATATAAAATATAAAA
1 TATATAAAAAATATAAAA
421175 TATAATTAAAAAATTATAAAAA
1 TAT-A-TAAAAAA-TAT-AAAA
421197 TATATAAAA
1 TATATAAAA
421206 TTAAATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.12
19 1 0.04
20 11 0.42
21 4 0.15
22 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TATATAAAAAATATAAAA
Found at i:428951 original size:14 final size:16
Alignment explanation
Indices: 428919--428954 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
428909 ATTTTTAACC
428919 ATTTTT-TTTAATAAT
1 ATTTTTATTTAATAAT
428934 ATTTTTATTTAA-AA-
1 ATTTTTATTTAATAAT
428948 ATTTTTA
1 ATTTTTA
428955 AATTATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 7 0.35
15 8 0.40
16 5 0.25
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTTTTATTTAATAAT
Found at i:429397 original size:28 final size:29
Alignment explanation
Indices: 429321--429400 Score: 94
Period size: 28 Copynumber: 2.8 Consensus size: 29
429311 AAATTAATAG
* * **
429321 TATATAATTTTTTAATTA-TTCATATATT
1 TATATTATATTTTAATTATTTTTTATATT
429349 TATATTATATATTT-ATTATTTTTTATATT
1 TATATTATAT-TTTAATTATTTTTTATATT
429378 T-TATTATATTTTAATTATTTTTT
1 TATATTATATTTTAATTATTTTTT
429401 TCGTGAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 3 0.07
28 30 0.67
29 12 0.27
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (29 bp):
TATATTATATTTTAATTATTTTTTATATT
Found at i:429400 original size:11 final size:10
Alignment explanation
Indices: 429343--429399 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
429333 TAATTATTCA
429343 TATATTTATAT
1 TATATTT-TAT
429354 TATATATTTA-
1 TATAT-TTTAT
429364 T-TATTTT-T
1 TATATTTTAT
429372 TATATTTTAT
1 TATATTTTAT
429382 TATATTTTAAT
1 TATATTTT-AT
429393 TAT-TTTT
1 TATATTTT
429400 TTCGTGAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.10
9 9 0.22
10 14 0.34
11 12 0.29
12 2 0.05
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATATTTTAT
Found at i:430104 original size:2 final size:2
Alignment explanation
Indices: 430097--430128 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
430087 AATCAAACTT
430097 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
430129 CACACACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:432100 original size:15 final size:15
Alignment explanation
Indices: 432051--432101 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
432041 TTAAAATATT
432051 TTTATATTTATATAAA
1 TTTATATTT-TATAAA
*
432067 TTTTAATATGTTA-ATAA
1 -TTT-ATATTTTATA-AA
432084 TTTATATTTTATAAA
1 TTTATATTTTATAAA
432099 TTT
1 TTT
432102 TAAAATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 12 0.41
16 5 0.17
17 7 0.24
18 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTTATATTTTATAAA
Found at i:432112 original size:23 final size:23
Alignment explanation
Indices: 432060--432115 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
432050 TTTTATATTT
* *
432060 ATATAAATTTTAATATGTTAATA
1 ATATATATTTTAAAATGTTAATA
* *
432083 ATTTATATTTTATAAATTTTAA-A
1 ATATATATTTTA-AAATGTTAATA
432106 ATATATATTT
1 ATATATATTT
432116 ATGTCGTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
ATATATATTTTAAAATGTTAATA
Found at i:432396 original size:2 final size:2
Alignment explanation
Indices: 432391--432416 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
432381 TAAAAAACTG
432391 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
432417 GTTTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:434423 original size:3 final size:3
Alignment explanation
Indices: 434415--434468 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
434405 TATTCTCCAC
434415 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
434463 ATA ATA
1 ATA ATA
434469 TCCTTTAGCC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:435355 original size:14 final size:14
Alignment explanation
Indices: 435336--435366 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
435326 TAAAGACAGA
435336 TTTAAAAAATAATT
1 TTTAAAAAATAATT
435350 TTT-AAAAATAATT
1 TTTAAAAAATAATT
435363 TTTA
1 TTTA
435367 TTTTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.81
14 3 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAAAAATAATT
Found at i:436764 original size:2 final size:2
Alignment explanation
Indices: 436757--436801 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
436747 TGACAAAAGA
436757 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
436799 AT A
1 AT A
436802 AACACATTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:437192 original size:19 final size:18
Alignment explanation
Indices: 437170--437217 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
437160 ATTATAATAT
*
437170 TAATAAAATATTATTTTTA
1 TAATAAAAT-TTATATTTA
*
437189 TAATAATATTTATATTTA
1 TAATAAAATTTATATTTA
437207 TAATTAAAATT
1 TAA-TAAAATT
437218 AAATTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATAAAATTTATATTTA
Found at i:437206 original size:18 final size:17
Alignment explanation
Indices: 437166--437241 Score: 63
Period size: 18 Copynumber: 4.6 Consensus size: 17
437156 ATTTATTATA
*
437166 ATATTAATAA-AATATT
1 ATATTTATAATAATATT
*
437182 ATTTTTATAATAATATTT
1 ATATTTATAATAATA-TT
*
437200 ATATTTATAATTAAAATT
1 ATATTTATAA-TAATATT
*
437218 A-AATTA-AA-AATATT
1 ATATTTATAATAATATT
437232 AT-TTTATAAT
1 ATATTTATAAT
437242 TAAATAATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
14 9 0.19
15 2 0.04
16 10 0.21
17 8 0.17
18 14 0.30
19 4 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTATAATAATATT
Found at i:437433 original size:16 final size:14
Alignment explanation
Indices: 437387--437429 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
437377 AAATAAAAGA
437387 TAAATTTATAAATAT
1 TAAATTTAT-AATAT
437402 TAAAATTTA-AATAT
1 T-AAATTTATAATAT
*
437416 TAAATTTATTATAT
1 TAAATTTATAATAT
437430 ATTACATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 7 0.28
14 10 0.40
15 1 0.04
16 7 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TAAATTTATAATAT
Found at i:438397 original size:13 final size:15
Alignment explanation
Indices: 438368--438399 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
438358 ATTATTTTTA
438368 AATTTATAAAAATAT
1 AATTTATAAAAATAT
438383 AATTT-TAAAAA-AT
1 AATTTATAAAAATAT
438396 AATT
1 AATT
438400 ATTTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 6 0.35
15 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTTATAAAAATAT
Found at i:438423 original size:19 final size:19
Alignment explanation
Indices: 438399--438438 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
438389 AAAAAATAAT
438399 TATTTTTTATATTTAAAAA
1 TATTTTTTATATTTAAAAA
* *
438418 TATTTTTTATTTTTATAAA
1 TATTTTTTATATTTAAAAA
438437 TA
1 TA
438439 ATTATTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTTTTATATTTAAAAA
Found at i:438921 original size:21 final size:21
Alignment explanation
Indices: 438886--438925 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
438876 TTTTTTGATT
438886 TAAATTTAATCATAAAATATA
1 TAAATTTAATCATAAAATATA
438907 TAAATATTAAT-ATAAAATA
1 TAAAT-TTAATCATAAAATA
438926 ATTTTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATTTAATCATAAAATATA
Found at i:440323 original size:13 final size:13
Alignment explanation
Indices: 440305--440329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
440295 TGTGACAAAC
440305 TTTTTATTTTTAT
1 TTTTTATTTTTAT
440318 TTTTTATTTTTA
1 TTTTTATTTTTA
440330 AAAGCTGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:442235 original size:15 final size:14
Alignment explanation
Indices: 442211--442261 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 14
442201 AAATATTATT
442211 TTTAAAATTTAATA
1 TTTAAAATTTAATA
* *
442225 TTTAAGTATTTTAAGA
1 TTTAA--AATTTAATA
442241 TTTAAAATATTAATA
1 TTTAAAAT-TTAATA
442256 TTTAAA
1 TTTAAA
442262 CTCGTTTCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 7 0.23
15 11 0.37
16 12 0.40
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (14 bp):
TTTAAAATTTAATA
Found at i:442238 original size:23 final size:23
Alignment explanation
Indices: 442200--442258 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
442190 TGAGAATTGA
442200 AAAATATT-AT-TTTTAAAATTT
1 AAAATATTAATATTTTAAAATTT
* *
442221 AATAT-TTAAGTATTTTAAGATTT
1 AAAATATTAA-TATTTTAAAATTT
442244 AAAATATTAATATTT
1 AAAATATTAATATTT
442259 AAACTCGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 2 0.06
21 5 0.16
22 1 0.03
23 19 0.61
24 4 0.13
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (23 bp):
AAAATATTAATATTTTAAAATTT
Found at i:446655 original size:30 final size:29
Alignment explanation
Indices: 446593--446653 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
446583 CAAATTACCC
* * *
446593 TTTGGGTTAAAAAAAAAAGTGGGTTCCAT
1 TTTGGATTAAAAAAAAAAGTGGGGTCAAT
*
446622 TTTGGATTAAAAAAAAACGTGGGGTCAAT
1 TTTGGATTAAAAAAAAAAGTGGGGTCAAT
446651 TTT
1 TTT
446654 TGAAAAAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.33
Consensus pattern (29 bp):
TTTGGATTAAAAAAAAAAGTGGGGTCAAT
Found at i:448354 original size:24 final size:23
Alignment explanation
Indices: 448305--448354 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
448295 TTAAGTTTCG
*
448305 TTAAAGAAATATAATTTTGTTAT
1 TTAAAGAAATATAATTTTATTAT
*
448328 TTAAAGATAATATTATTATTATT-T
1 TTAAAGA-AATATAATT-TTATTAT
448352 TTA
1 TTA
448355 TATTTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 7 0.30
24 12 0.52
25 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (23 bp):
TTAAAGAAATATAATTTTATTAT
Found at i:450288 original size:22 final size:23
Alignment explanation
Indices: 450261--450324 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 23
450251 AGGATTTAAG
450261 TAATAAAATAATTATTTAAAT-T
1 TAATAAAATAATTATTTAAATAT
*
450283 TAATAATAA-AA-TATATAAATAT
1 TAATAA-AATAATTATTTAAATAT
450305 TAATATAAAATAATT-TTTAA
1 T-A-ATAAAATAATTATTTAA
450325 TAATTTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
21 8 0.24
22 10 0.29
23 5 0.15
24 10 0.29
25 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
TAATAAAATAATTATTTAAATAT
Found at i:450312 original size:21 final size:21
Alignment explanation
Indices: 450254--450316 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 21
450244 TTGGATTAGG
450254 ATTTAAGTAATAAAATAATTATTTAA
1 ATTTAA-TAATAAAAT-A-TA--TAA
450280 ATTTAATAATAAAATATATAA
1 ATTTAATAATAAAATATATAA
450301 ATATTAAT-ATAAAATA
1 AT-TTAATAATAAAATA
450317 ATTTTTAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
21 13 0.36
22 5 0.14
23 2 0.06
24 1 0.03
25 9 0.25
26 6 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
ATTTAATAATAAAATATATAA
Found at i:450623 original size:19 final size:20
Alignment explanation
Indices: 450579--450624 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
450569 ATTATTATAT
* *
450579 TATAATTAATAACATATTTT
1 TATAATTAATAAAATATTTA
*
450599 TTTAATT-ATAAAATATTTA
1 TATAATTAATAAAATATTTA
450618 TATAATT
1 TATAATT
450625 TTTTATTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TATAATTAATAAAATATTTA
Found at i:450811 original size:24 final size:24
Alignment explanation
Indices: 450756--450812 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
450746 AATTGTTTAA
*
450756 TAAAAAATATTTTTAATTATTTTT
1 TAAAAAATATTTATAATTATTTTT
**
450780 TATGAAAT-TTATATAATTATTTTT
1 TAAAAAATATT-TATAATTATTTTT
450804 TAAAAAATA
1 TAAAAAATA
450813 AAAAAAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
TAAAAAATATTTATAATTATTTTT
Found at i:450914 original size:3 final size:3
Alignment explanation
Indices: 450908--450938 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
450898 AAAATCGATG
450908 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
450939 AATAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:451796 original size:19 final size:19
Alignment explanation
Indices: 451769--451807 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
451759 ATAATAAAAA
*
451769 ATAATTTAT-ATTAATATTT
1 ATAAATTATAATTAA-ATTT
451788 ATAAATTATAATTAAATTT
1 ATAAATTATAATTAAATTT
451807 A
1 A
451808 AATAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAAATTATAATTAAATTT
Found at i:452158 original size:2 final size:2
Alignment explanation
Indices: 452151--452179 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
452141 TGGAATATGA
452151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
452180 GTTGACACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:452841 original size:14 final size:14
Alignment explanation
Indices: 452807--452843 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
452797 ATAATAAAAA
*
452807 ATATTTATAATTAT
1 ATATTTAAAATTAT
452821 -T-TTTAAAATTAT
1 ATATTTAAAATTAT
452833 ATATTTAAAAT
1 ATATTTAAAAT
452844 ATTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 10 0.50
13 2 0.10
14 8 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
ATATTTAAAATTAT
Found at i:453419 original size:24 final size:22
Alignment explanation
Indices: 453353--453420 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
453343 TTTAATACTT
* *
453353 TTTTAATTATTTTTAAAATATAA
1 TTTTAA-TAATTTTAAAATTTAA
* *
453376 TATTTAATAAATTAAAAATTTAAA
1 T-TTTAATAATTTTAAAATTT-AA
453400 TTTTAATAATTTTAATAATTT
1 TTTTAATAATTTTAA-AATTT
453421 TTTATTTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
23 23 0.64
24 13 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTAATAATTTTAAAATTTAA
Found at i:453699 original size:24 final size:25
Alignment explanation
Indices: 453667--453715 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
453657 TTATTAAATA
* *
453667 TTTATTATA-TTAAATATTTTAATT
1 TTTAATATATTTAAATAATTTAATT
*
453691 TTTAATATATTTAACTAATTTAATT
1 TTTAATATATTTAAATAATTTAATT
453716 AATTAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTAATATATTTAAATAATTTAATT
Found at i:454074 original size:14 final size:15
Alignment explanation
Indices: 454055--454084 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
454045 TAAATTAAAT
454055 TTTACG-TATATTTA
1 TTTACGTTATATTTA
454069 TTTACGTTATATTTA
1 TTTACGTTATATTTA
454084 T
1 T
454085 ATATTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTACGTTATATTTA
Found at i:454086 original size:6 final size:6
Alignment explanation
Indices: 454075--454185 Score: 52
Period size: 6 Copynumber: 18.0 Consensus size: 6
454065 TTTATTTACG
* *
454075 TTATAT TTATAT ATTTTAT TT-TA- TTATAA TTATAT TTAAATCAT TTATAT
1 TTATAT TTATAT -TTATAT TTATAT TTATAT TTATAT TT--AT-AT TTATAT
** * *
454125 TTATAT AAATTT TAATATAT TTATTTAT TTATA- TTATA- TTATTT TTATA-
1 TTATAT TTATAT T--TATAT TTA--TAT TTATAT TTATAT TTATAT TTATAT
*
454174 ATATAT TTATAT
1 TTATAT TTATAT
454186 AATAATATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
4 2 0.02
5 17 0.21
6 39 0.48
7 7 0.09
8 12 0.15
9 4 0.05
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (6 bp):
TTATAT
Found at i:454092 original size:9 final size:8
Alignment explanation
Indices: 454076--454186 Score: 54
Period size: 8 Copynumber: 13.5 Consensus size: 8
454066 TTATTTACGT
454076 TATATTTA
1 TATATTTA
454084 TATATTT-
1 TATATTTA
454091 TAT-TTTA
1 TATATTTA
*
454098 T-TA-TAA
1 TATATTTA
454104 TTATATTTA
1 -TATATTTA
*
454113 AATCATTTA
1 TAT-ATTTA
454122 TAT-TTATA
1 TATATT-TA
*
454130 TAAATTTTAA
1 TATA-TTT-A
454140 TATATTTA
1 TATATTTA
*
454148 TTTATTTA
1 TATATTTA
454156 TATTATATTA
1 TA-TAT-TTA
*
454166 T-TTTTATAA
1 TATATT-T-A
454175 TATATTTA
1 TATATTTA
454183 TATA
1 TATA
454187 ATAATATTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 30
0.66 0.08 0.25
Matches are distributed among these distances:
6 6 0.08
7 8 0.10
8 32 0.41
9 19 0.24
10 13 0.17
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (8 bp):
TATATTTA
Found at i:454171 original size:16 final size:15
Alignment explanation
Indices: 454061--454196 Score: 67
Period size: 15 Copynumber: 9.5 Consensus size: 15
454051 AAATTTTACG
**
454061 TATATTTATTTACGT
1 TATATTTATTTATAT
* *
454076 TATATTTATATATTT
1 TATATTTATTTATAT
454091 TAT-TTTA-TTATAAT
1 TATATTTATTTAT-AT
* *
454105 TATATTTAAATCAT-T
1 TATATTT-ATTTATAT
454120 TATATTTA--TATA-
1 TATATTTATTTATAT
* *
454132 AAT-TTTA-ATATAT
1 TATATTTATTTATAT
454145 T-TATTTATTTATAT
1 TATATTTATTTATAT
* *
454159 TATATTATTTTTATAA
1 TATATT-TATTTATAT
*
454175 TATATTTATATA-AT
1 TATATTTATTTATAT
*
454189 AATATTTA
1 TATATTTA
454197 ATATTATTAA
Statistics
Matches: 94, Mismatches: 16, Indels: 23
0.71 0.12 0.17
Matches are distributed among these distances:
11 4 0.04
12 9 0.10
13 7 0.07
14 23 0.24
15 34 0.36
16 14 0.15
17 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (15 bp):
TATATTTATTTATAT
Found at i:454172 original size:11 final size:11
Alignment explanation
Indices: 454061--454185 Score: 62
Period size: 10 Copynumber: 12.5 Consensus size: 11
454051 AAATTTTACG
454061 TATATT-TATT
1 TATATTATATT
**
454071 TACGTTATATT
1 TATATTATATT
454082 TATA-TAT-TT
1 TATATTATATT
454091 TAT-TT-TA-T
1 TATATTATATT
454099 TATAATTATATT
1 TAT-ATTATATT
454111 TA-A--ATCATT
1 TATATTAT-ATT
*
454120 TATATT-TATA
1 TATATTATATT
* * *
454130 TAAATTTTA-A
1 TATATTATATT
454140 TATATT-TATT
1 TATATTATATT
454150 TAT-TTATA-T
1 TATATTATATT
*
454159 TATATTATTTT
1 TATATTATATT
*
454170 TATAATATATT
1 TATATTATATT
454181 TATAT
1 TATAT
454186 AATAATATTT
Statistics
Matches: 87, Mismatches: 12, Indels: 31
0.67 0.09 0.24
Matches are distributed among these distances:
8 7 0.08
9 19 0.22
10 33 0.38
11 25 0.29
12 3 0.03
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (11 bp):
TATATTATATT
Found at i:454193 original size:14 final size:14
Alignment explanation
Indices: 454150--454196 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
454140 TATATTTATT
* *
454150 TATTTATATTATAT
1 TATTTATATAATAA
*
454164 TATTTTTATAAT-A
1 TATTTATATAATAA
454177 TATTTATATAATAA
1 TATTTATATAATAA
454191 TATTTA
1 TATTTA
454197 ATATTATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTTATATAATAA
Found at i:454194 original size:35 final size:34
Alignment explanation
Indices: 454085--454211 Score: 96
Period size: 35 Copynumber: 3.7 Consensus size: 34
454075 TTATATTTAT
* * * * *
454085 ATATTTTATTTTATTATAATTATATTTAAATCATTT
1 ATATTTAATATTATTATAA-TATATTTATAT-AATA
* * * * *
454121 ATATTT-ATATAAATTTTAATATATTTATTTATTT
1 ATATTTAATAT-TATTATAATATATTTATATAATA
* *
454155 ATATTATATTATTTTTATAATATATTTATATAATA
1 ATATT-TAATATTATTATAATATATTTATATAATA
454190 ATATTTAATATTATTA-AATATA
1 ATATTTAATATTATTATAATATA
454212 ATACTAATTG
Statistics
Matches: 74, Mismatches: 14, Indels: 9
0.76 0.14 0.09
Matches are distributed among these distances:
33 6 0.08
34 18 0.24
35 35 0.47
36 15 0.20
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (34 bp):
ATATTTAATATTATTATAATATATTTATATAATA
Found at i:455026 original size:36 final size:36
Alignment explanation
Indices: 454978--455079 Score: 113
Period size: 36 Copynumber: 2.9 Consensus size: 36
454968 AATCTAAATA
*
454978 AATTTAAA-ATAAATAAATAAAAAATATAT-TTATT
1 AATTTAAATATAAATAAATAAAAAATAAATATTATT
*
455012 AATTTGAAATATAAA-ATAATAAAACATAAATATTATT
1 AATTT-AAATATAAATA-AATAAAAAATAAATATTATT
* *
455049 AA-TTATATTATAAATAAATAAAACATAAATA
1 AATTTA-AATATAAATAAATAAAAAATAAATA
455080 ATAATATTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
34 5 0.08
35 5 0.08
36 41 0.69
37 8 0.14
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (36 bp):
AATTTAAATATAAATAAATAAAAAATAAATATTATT
Found at i:455104 original size:27 final size:30
Alignment explanation
Indices: 455048--455107 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
455038 TAAATATTAT
*
455048 TAATTATATTATAAATAAATAAAACATAAA
1 TAATAATATTATAAATAAATAAAACATAAA
*
455078 TAATAATATTAT-AATTAA-AAAA-ATAAA
1 TAATAATATTATAAATAAATAAAACATAAA
455105 TAA
1 TAA
455108 ATTTTAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.29
28 4 0.14
29 5 0.18
30 11 0.39
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (30 bp):
TAATAATATTATAAATAAATAAAACATAAA
Found at i:455117 original size:11 final size:11
Alignment explanation
Indices: 455101--455141 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
455091 ATTAAAAAAA
455101 TAAATAAATTT
1 TAAATAAATTT
455112 TAAATAAATTAT
1 TAAATAAATT-T
*
455124 TAAATAAACTT
1 TAAATAAATTT
455135 TAAATAA
1 TAAATAA
455142 TTCACAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (11 bp):
TAAATAAATTT
Found at i:455119 original size:23 final size:23
Alignment explanation
Indices: 455075--455141 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
455065 AATAAAACAT
* *
455075 AAAT-AATAATATTATAATTAAAA
1 AAATAAATAA-ATTTTAAATAAAA
*
455098 AAATAAATAAATTTTAAATAAAT
1 AAATAAATAAATTTTAAATAAAA
* * *
455121 TATTAAATAAACTTTAAATAA
1 AAATAAATAAATTTTAAATAA
455142 TTCACAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
23 32 0.86
24 5 0.14
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATAAATAAATTTTAAATAAAA
Found at i:456666 original size:2 final size:2
Alignment explanation
Indices: 456661--456711 Score: 61
Period size: 2 Copynumber: 26.0 Consensus size: 2
456651 TGCTGAAAAA
* *
456661 AT AT AT AT AT -T AT A- AT GT TT GAT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
456702 AT AT AT AT AT
1 AT AT AT AT AT
456712 GTGGGAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
1 2 0.05
2 40 0.93
3 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:457497 original size:18 final size:19
Alignment explanation
Indices: 457474--457510 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
457464 ATAAAAAATT
*
457474 ATGTTAAT-TTAATTTTAA
1 ATGTTAATGTAAATTTTAA
457492 ATGTTAATGTAAATTTTAA
1 ATGTTAATGTAAATTTTAA
457511 TTATTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (19 bp):
ATGTTAATGTAAATTTTAA
Found at i:457720 original size:79 final size:79
Alignment explanation
Indices: 457625--457786 Score: 315
Period size: 79 Copynumber: 2.1 Consensus size: 79
457615 TTTATTTATT
457625 ATTATTTGTGATTTTATGTATAGATATTAATAAAAATTATCATTGAAAATTTCAATATCATAATT
1 ATTATTTGTGATTTTATGTATAGATATTAATAAAAATTATCATTGAAAATTTCAATATCATAATT
457690 TAAAAAAGAAAAAA
66 TAAAAAAGAAAAAA
*
457704 ATTATTTGTGATTTTATGTATAGATATTAATAAAAATTATCATTGAAAATTTCAATATCGTAATT
1 ATTATTTGTGATTTTATGTATAGATATTAATAAAAATTATCATTGAAAATTTCAATATCATAATT
457769 TAAAAAAGAAAAAA
66 TAAAAAAGAAAAAA
457783 ATTA
1 ATTA
457787 CTAAAATATT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.40
Consensus pattern (79 bp):
ATTATTTGTGATTTTATGTATAGATATTAATAAAAATTATCATTGAAAATTTCAATATCATAATT
TAAAAAAGAAAAAA
Done.