Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Scaffold36 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 4808052 ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34 Warning! 18886 characters in sequence are not A, C, G, or T File 15 of 28 Found at i:2338845 original size:2 final size:2 Alignment explanation
Indices: 2338840--2338870 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 2338830 AATATATGTG 2338840 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 2338871 TTCACAATAT Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:2339340 original size:2 final size:2 Alignment explanation
Indices: 2339333--2339359 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 2339323 ACTTTGTAAC 2339333 AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT A 2339360 ATTACATGAA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:2340385 original size:2 final size:2 Alignment explanation
Indices: 2340380--2340415 Score: 72 Period size: 2 Copynumber: 18.0 Consensus size: 2 2340370 AACCCTAGTT 2340380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 2340416 AAACACTAGT Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 34 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:2340624 original size:24 final size:23 Alignment explanation
Indices: 2340581--2340626 Score: 58 Period size: 24 Copynumber: 1.9 Consensus size: 23 2340571 ATTTAGATCA 2340581 TTATTTATTTAATTAAATAATATT 1 TTATTTATTTAATT-AATAATATT 2340605 TTATTTAATTTTAATT-ATAATA 1 TTATTT-A-TTTAATTAATAATA 2340627 ATATAAATAT Statistics Matches: 20, Mismatches: 0, Indels: 4 0.83 0.00 0.17 Matches are distributed among these distances: 24 12 0.60 25 1 0.05 26 7 0.35 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (23 bp): TTATTTATTTAATTAATAATATT Found at i:2341700 original size:25 final size:25 Alignment explanation
Indices: 2341651--2341723 Score: 75 Period size: 25 Copynumber: 3.0 Consensus size: 25 2341641 GATCGATTAA * 2341651 TTATATATTTTTA--ATA-TAATTT 1 TTATATATTTTTATTATATTAATAT 2341673 TTA-ATTATTTGTTATT-TATTAATAT 1 TTATA-TATTT-TTATTATATTAATAT * 2341698 TTATATATTTTTATTATATTTATAT 1 TTATATATTTTTATTATATTAATAT 2341723 T 1 T 2341724 ATTTTTAAAA Statistics Matches: 42, Mismatches: 2, Indels: 11 0.76 0.04 0.20 Matches are distributed among these distances: 21 1 0.02 22 8 0.19 23 3 0.07 24 7 0.17 25 22 0.52 26 1 0.02 ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66 Consensus pattern (25 bp): TTATATATTTTTATTATATTAATAT Found at i:2341718 original size:19 final size:21 Alignment explanation
Indices: 2341687--2341730 Score: 74 Period size: 20 Copynumber: 2.2 Consensus size: 21 2341677 TTATTTGTTA 2341687 TTTATTAATATTTATA-TATT 1 TTTATTAATATTTATATTATT 2341707 TTTATT-ATATTTATATTATT 1 TTTATTAATATTTATATTATT 2341727 TTTA 1 TTTA 2341731 AAATTATAGC Statistics Matches: 23, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 19 9 0.39 20 14 0.61 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (21 bp): TTTATTAATATTTATATTATT Found at i:2341730 original size:11 final size:11 Alignment explanation
Indices: 2341651--2341730 Score: 53 Period size: 11 Copynumber: 7.3 Consensus size: 11 2341641 GATCGATTAA 2341651 TTATA-TATTT 1 TTATATTATTT * 2341661 TTAATATAATTT 1 TT-ATATTATTT 2341673 TTA-ATTATTT 1 TTATATTATTT * 2341683 GTTATTTATTAATAT 1 -TTA--TATT-ATTT 2341698 TTATA-TA-TT 1 TTATATTATTT * 2341707 TT-TATTATAT 1 TTATATTATTT 2341717 TTATATTATTT 1 TTATATTATTT 2341728 TTA 1 TTA 2341731 AAATTATAGC Statistics Matches: 54, Mismatches: 6, Indels: 19 0.68 0.08 0.24 Matches are distributed among these distances: 8 2 0.04 9 5 0.09 10 12 0.22 11 18 0.33 12 8 0.15 14 6 0.11 15 3 0.06 ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66 Consensus pattern (11 bp): TTATATTATTT Found at i:2342068 original size:2 final size:2 Alignment explanation
Indices: 2342061--2342089 Score: 58 Period size: 2 Copynumber: 14.5 Consensus size: 2 2342051 CAAACTTTTG 2342061 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 2342090 TTAGATTGCT Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:2342177 original size:19 final size:20 Alignment explanation
Indices: 2342148--2342185 Score: 60 Period size: 19 Copynumber: 1.9 Consensus size: 20 2342138 CCTCTGAAAA * 2342148 AAAATTTTAATTATTTATAT 1 AAAATTTTAATTATATATAT 2342168 AAAA-TTTAATTATATATA 1 AAAATTTTAATTATATATA 2342186 AATATAAATA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 19 13 0.76 20 4 0.24 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (20 bp): AAAATTTTAATTATATATAT Found at i:2342301 original size:13 final size:13 Alignment explanation
Indices: 2342280--2342310 Score: 53 Period size: 13 Copynumber: 2.4 Consensus size: 13 2342270 TCAATCATTA * 2342280 GTTTTGTCGTAAT 1 GTTTAGTCGTAAT 2342293 GTTTAGTCGTAAT 1 GTTTAGTCGTAAT 2342306 GTTTA 1 GTTTA 2342311 TTTTTTGAAT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 13 17 1.00 ACGTcount: A:0.19, C:0.06, G:0.23, T:0.52 Consensus pattern (13 bp): GTTTAGTCGTAAT Found at i:2343481 original size:18 final size:19 Alignment explanation
Indices: 2343449--2343495 Score: 64 Period size: 18 Copynumber: 2.6 Consensus size: 19 2343439 AAATAAATGA 2343449 ATAAT-TAATTATATTA-T 1 ATAATATAATTATATTATT * 2343466 ATAATATAATTTTATTATT 1 ATAATATAATTATATTATT 2343485 ATAA-ATAATTA 1 ATAATATAATTA 2343496 AAAAATTTTA Statistics Matches: 26, Mismatches: 2, Indels: 3 0.84 0.06 0.10 Matches are distributed among these distances: 17 5 0.19 18 16 0.62 19 5 0.19 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (19 bp): ATAATATAATTATATTATT Found at i:2343697 original size:104 final size:98 Alignment explanation
Indices: 2343520--2343703 Score: 217 Period size: 104 Copynumber: 1.8 Consensus size: 98 2343510 TAATAAAATT * * * * 2343520 TTTAAAAATAAATTTATTTTTGATACATAACTGTTTTTTTAATTTTATAAAATATCAAAATAGTA 1 TTTAAAAATAAATTTATCTTTAATACATAACTGTTTTTTTAATTTCATAAAAAATCAAAATAGTA * 2343585 TTATATGTCT-TTTTAAAAAATATTTAATTATA 66 TTACATGTCTCTTTTAAAAAATATTTAATTATA * 2343617 TTTAAAATATAAATTTATCTTTAATACATAGACTGTTAAAACTTTTTAATTTCATAAAAAATTAA 1 TTTAAAA-ATAAATTTATCTTTAATACATA-ACTGTT-----TTTTTAATTTCATAAAAAATCAA * * * 2343682 AATATTTTTGCATGTCTCTTTT 59 AATAGTATTACATGTCTCTTTT 2343704 TTAATAAATT Statistics Matches: 70, Mismatches: 9, Indels: 8 0.80 0.10 0.09 Matches are distributed among these distances: 97 7 0.10 98 20 0.29 99 6 0.09 104 33 0.47 105 4 0.06 ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48 Consensus pattern (98 bp): TTTAAAAATAAATTTATCTTTAATACATAACTGTTTTTTTAATTTCATAAAAAATCAAAATAGTA TTACATGTCTCTTTTAAAAAATATTTAATTATA Found at i:2343726 original size:19 final size:21 Alignment explanation
Indices: 2343702--2343743 Score: 61 Period size: 19 Copynumber: 2.1 Consensus size: 21 2343692 CATGTCTCTT 2343702 TTTTAATAAAT-TATATA-AA 1 TTTTAATAAATATATATATAA * 2343721 TTTTAATATATATATATATAA 1 TTTTAATAAATATATATATAA 2343742 TT 1 TT 2343744 ATATTACATA Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 19 10 0.50 20 6 0.30 21 4 0.20 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (21 bp): TTTTAATAAATATATATATAA Found at i:2344197 original size:20 final size:20 Alignment explanation
Indices: 2344172--2344211 Score: 55 Period size: 20 Copynumber: 2.0 Consensus size: 20 2344162 ATGTAAAAAT 2344172 ATATTAAATATAAT-TATAAA 1 ATATTAAATA-AATATATAAA * 2344192 ATATTATATAAATATATAAA 1 ATATTAAATAAATATATAAA 2344212 TTATAATATC Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 19 3 0.17 20 15 0.83 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (20 bp): ATATTAAATAAATATATAAA Found at i:2344220 original size:20 final size:18 Alignment explanation
Indices: 2344174--2344220 Score: 51 Period size: 20 Copynumber: 2.6 Consensus size: 18 2344164 GTAAAAATAT 2344174 ATTA-AATATAATTATAA 1 ATTATAATATAATTATAA * * 2344191 AATATTATATAAATATATAA 1 ATTATAATAT-AAT-TATAA 2344211 ATTATAATAT 1 ATTATAATAT 2344221 CTAAATGAAC Statistics Matches: 23, Mismatches: 4, Indels: 3 0.77 0.13 0.10 Matches are distributed among these distances: 17 3 0.13 18 4 0.17 19 3 0.13 20 13 0.57 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (18 bp): ATTATAATATAATTATAA Found at i:2344823 original size:28 final size:28 Alignment explanation
Indices: 2344770--2344825 Score: 78 Period size: 28 Copynumber: 2.0 Consensus size: 28 2344760 CTTTTTTATA * 2344770 TTAAACTTAAAAAAATTAAATTTAAATT 1 TTAAACTTAAAAAAATTAAATATAAATT * 2344798 TTAAATTTAAAAAAATGT-AATATAAATT 1 TTAAACTTAAAAAAAT-TAAATATAAATT 2344826 ACTATCATAA Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 28 24 0.96 29 1 0.04 ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39 Consensus pattern (28 bp): TTAAACTTAAAAAAATTAAATATAAATT Found at i:2345680 original size:23 final size:21 Alignment explanation
Indices: 2345621--2345681 Score: 59 Period size: 23 Copynumber: 2.7 Consensus size: 21 2345611 GCAACAAAAA * 2345621 TATTTTAAATATTATATTAATTT 1 TATTTTAAATA-TA-ATTAATAT * 2345644 TACTTTAAAATATAATTAACATAT 1 TA-TTTTAAATATAATT-A-ATAT 2345668 TATTTTAAATATAA 1 TATTTTAAATATAA 2345682 AATGTATAAA Statistics Matches: 32, Mismatches: 3, Indels: 6 0.78 0.07 0.15 Matches are distributed among these distances: 22 3 0.09 23 16 0.50 24 13 0.41 ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51 Consensus pattern (21 bp): TATTTTAAATATAATTAATAT Found at i:2346326 original size:21 final size:20 Alignment explanation
Indices: 2346300--2346371 Score: 65 Period size: 21 Copynumber: 3.5 Consensus size: 20 2346290 AAGTTCTTAA 2346300 AAAAACTACAAATTTATTTTT 1 AAAAACTAC-AATTTATTTTT * * 2346321 AAAAACAATCAATTTATTCTT 1 AAAAACTA-CAATTTATTTTT * * 2346342 -AAAACTACCTATTTGTTTTT 1 AAAAACTA-CAATTTATTTTT 2346362 AAAAAACTAC 1 -AAAAACTAC 2346372 CATAAATAAT Statistics Matches: 41, Mismatches: 7, Indels: 6 0.76 0.13 0.11 Matches are distributed among these distances: 20 15 0.37 21 18 0.44 22 8 0.20 ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39 Consensus pattern (20 bp): AAAAACTACAATTTATTTTT Found at i:2347060 original size:16 final size:17 Alignment explanation
Indices: 2347041--2347078 Score: 51 Period size: 17 Copynumber: 2.3 Consensus size: 17 2347031 GTTTTTGAAT 2347041 TTTTTTA-TGAAAAATA 1 TTTTTTATTGAAAAATA ** 2347057 TTTTTTATTTTAAAATA 1 TTTTTTATTGAAAAATA 2347074 TTTTT 1 TTTTT 2347079 ATTTGTTTTT Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 16 7 0.37 17 12 0.63 ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63 Consensus pattern (17 bp): TTTTTTATTGAAAAATA Found at i:2347079 original size:16 final size:17 Alignment explanation
Indices: 2347051--2347082 Score: 57 Period size: 16 Copynumber: 1.9 Consensus size: 17 2347041 TTTTTTATGA 2347051 AAAATATTTTTTATTTT 1 AAAATATTTTTTATTTT 2347068 AAAATA-TTTTTATTT 1 AAAATATTTTTTATTT 2347083 GTTTTTAATA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 9 0.60 17 6 0.40 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (17 bp): AAAATATTTTTTATTTT Found at i:2347392 original size:3 final size:3 Alignment explanation
Indices: 2347384--2347419 Score: 72 Period size: 3 Copynumber: 12.0 Consensus size: 3 2347374 TAATTCTCTG 2347384 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA 1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA 2347420 TGCTCTGGAA Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 33 1.00 ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00 Consensus pattern (3 bp): GAA Found at i:2347875 original size:21 final size:22 Alignment explanation
Indices: 2347826--2347879 Score: 69 Period size: 21 Copynumber: 2.5 Consensus size: 22 2347816 TAGATCATTT 2347826 TATTTAAAT-TTAATTATAAAA 1 TATTTAAATATTAATTATAAAA * 2347847 TATATAAATATTAA-TATAAAA 1 TATTTAAATATTAATTATAAAA 2347868 -ATTTTAAATATT 1 TA-TTTAAATATT 2347880 TTAATATATT Statistics Matches: 29, Mismatches: 2, Indels: 4 0.83 0.06 0.11 Matches are distributed among these distances: 20 1 0.03 21 24 0.83 22 4 0.14 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (22 bp): TATTTAAATATTAATTATAAAA Found at i:2347890 original size:10 final size:9 Alignment explanation
Indices: 2347863--2347896 Score: 50 Period size: 9 Copynumber: 3.7 Consensus size: 9 2347853 AATATTAATA * 2347863 TAAAAATTT 1 TAAATATTT 2347872 TAAATATTT 1 TAAATATTT 2347881 TAATATATTT 1 TAA-ATATTT 2347891 TAAATA 1 TAAATA 2347897 ATGATTTAAA Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 9 14 0.61 10 9 0.39 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (9 bp): TAAATATTT Found at i:2349162 original size:13 final size:13 Alignment explanation
Indices: 2349144--2349186 Score: 70 Period size: 13 Copynumber: 3.4 Consensus size: 13 2349134 CAAAATTTTG 2349144 ATTTTATTAAATT 1 ATTTTATTAAATT 2349157 ATTTTATTAAATT 1 ATTTTATTAAATT * 2349170 ATTTTATTGAA-T 1 ATTTTATTAAATT 2349182 ATTTT 1 ATTTT 2349187 GAATACTATT Statistics Matches: 29, Mismatches: 1, Indels: 1 0.94 0.03 0.03 Matches are distributed among these distances: 12 6 0.21 13 23 0.79 ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63 Consensus pattern (13 bp): ATTTTATTAAATT Found at i:2350492 original size:25 final size:25 Alignment explanation
Indices: 2350430--2350499 Score: 99 Period size: 24 Copynumber: 2.8 Consensus size: 25 2350420 AATAAAAATT * 2350430 AGCCACCAATTTTGACAAA-CAACA 1 AGCCACCAATTTTGACAAATAAACA 2350454 AGCCACCAATTTTGACAAATAAACA 1 AGCCACCAATTTTGACAAATAAACA * 2350479 AGCCTCC-ATATTTGACAAATA 1 AGCCACCAAT-TTTGACAAATA 2350500 CAAAGGAAAC Statistics Matches: 42, Mismatches: 2, Indels: 3 0.89 0.04 0.06 Matches are distributed among these distances: 24 21 0.50 25 21 0.50 ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21 Consensus pattern (25 bp): AGCCACCAATTTTGACAAATAAACA Found at i:2350545 original size:27 final size:27 Alignment explanation
Indices: 2350484--2350554 Score: 99 Period size: 27 Copynumber: 2.6 Consensus size: 27 2350474 AAACAAGCCT * * 2350484 CCATATTTGACAAATACAAAGGAAACCA 1 CCATTTTTGACAAACACAAA-GAAACCA 2350512 CCATTTTTGACAAACACAAA-ATAACCA 1 CCATTTTTGACAAACACAAAGA-AACCA 2350539 CCATTTTTGACAAACA 1 CCATTTTTGACAAACA 2350555 AATGGGTGGC Statistics Matches: 40, Mismatches: 2, Indels: 3 0.89 0.04 0.07 Matches are distributed among these distances: 26 1 0.03 27 21 0.52 28 18 0.45 ACGTcount: A:0.46, C:0.24, G:0.07, T:0.23 Consensus pattern (27 bp): CCATTTTTGACAAACACAAAGAAACCA Found at i:2350557 original size:24 final size:24 Alignment explanation
Indices: 2350432--2350557 Score: 92 Period size: 24 Copynumber: 4.9 Consensus size: 24 2350422 TAAAAATTAG * * 2350432 CCACCAATTTTGACAAACAACA-AG 1 CCACCATTTTTGACAAACAA-ATAA * * * 2350456 CCACCAATTTTGACAAATAAACAA 1 CCACCATTTTTGACAAACAAATAA * * * 2350480 GCCTCCATATTTGACAAATACAAAGGAAA 1 -CCACCATTTTTGAC-AA-ACAAA--TAA 2350509 CCACCATTTTTGACAAACACAAAATAA 1 CCACCATTTTTGAC-AA-AC-AAATAA 2350536 CCACCATTTTTGACAAACAAAT 1 CCACCATTTTTGACAAACAAAT 2350558 GGGTGGCTTT Statistics Matches: 84, Mismatches: 11, Indels: 14 0.77 0.10 0.13 Matches are distributed among these distances: 23 1 0.01 24 24 0.29 25 13 0.15 26 4 0.05 27 20 0.24 28 17 0.20 29 5 0.06 ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21 Consensus pattern (24 bp): CCACCATTTTTGACAAACAAATAA Found at i:2355083 original size:25 final size:25 Alignment explanation
Indices: 2355021--2355090 Score: 99 Period size: 24 Copynumber: 2.8 Consensus size: 25 2355011 AATAAAAATT * 2355021 AGCCACCAATTTTGACAAA-CAACA 1 AGCCACCAATTTTGACAAATAAACA 2355045 AGCCACCAATTTTGACAAATAAACA 1 AGCCACCAATTTTGACAAATAAACA * 2355070 AGCCTCC-ATATTTGACAAATA 1 AGCCACCAAT-TTTGACAAATA 2355091 CAAAGGAAAT Statistics Matches: 42, Mismatches: 2, Indels: 3 0.89 0.04 0.06 Matches are distributed among these distances: 24 21 0.50 25 21 0.50 ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21 Consensus pattern (25 bp): AGCCACCAATTTTGACAAATAAACA Found at i:2355139 original size:27 final size:27 Alignment explanation
Indices: 2355075--2355145 Score: 90 Period size: 27 Copynumber: 2.6 Consensus size: 27 2355065 AAACAAGCCT * * * 2355075 CCATATTTGACAAATACAAAGGAAATCA 1 CCATTTTTGACAAACACAAA-GAAACCA 2355103 CCATTTTTGACAAACACAAA-ATAACCA 1 CCATTTTTGACAAACACAAAGA-AACCA 2355130 CCATTTTTGACAAACA 1 CCATTTTTGACAAACA 2355146 AATGGGTGGC Statistics Matches: 39, Mismatches: 3, Indels: 3 0.87 0.07 0.07 Matches are distributed among these distances: 26 1 0.03 27 20 0.51 28 18 0.46 ACGTcount: A:0.46, C:0.23, G:0.07, T:0.24 Consensus pattern (27 bp): CCATTTTTGACAAACACAAAGAAACCA Found at i:2355148 original size:24 final size:24 Alignment explanation
Indices: 2355023--2355148 Score: 83 Period size: 24 Copynumber: 4.9 Consensus size: 24 2355013 TAAAAATTAG * * 2355023 CCACCAATTTTGACAAACAACA-AG 1 CCACCATTTTTGACAAACAA-ATAA * * * 2355047 CCACCAATTTTGACAAATAAACAA 1 CCACCATTTTTGACAAACAAATAA * * * 2355071 GCCTCCATATTTGACAAATACAAAGGAAA 1 -CCACCATTTTTGAC-AA-ACAAA--TAA * 2355100 TCACCATTTTTGACAAACACAAAATAA 1 CCACCATTTTTGAC-AA-AC-AAATAA 2355127 CCACCATTTTTGACAAACAAAT 1 CCACCATTTTTGACAAACAAAT 2355149 GGGTGGCTTT Statistics Matches: 82, Mismatches: 13, Indels: 14 0.75 0.12 0.13 Matches are distributed among these distances: 23 1 0.01 24 24 0.29 25 13 0.16 26 4 0.05 27 19 0.23 28 16 0.20 29 5 0.06 ACGTcount: A:0.46, C:0.25, G:0.07, T:0.22 Consensus pattern (24 bp): CCACCATTTTTGACAAACAAATAA Found at i:2355505 original size:2 final size:2 Alignment explanation
Indices: 2355498--2355529 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 2355488 TATCACCATC 2355498 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2355530 TCAGACATTG Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2356411 original size:22 final size:24 Alignment explanation
Indices: 2356385--2356428 Score: 65 Period size: 24 Copynumber: 1.9 Consensus size: 24 2356375 CTCACGTTAC 2356385 TATTT-AA-TAAATAAAAATATTT 1 TATTTAAATTAAATAAAAATATTT * 2356407 TATTTAAATTAATTAAAAATAT 1 TATTTAAATTAAATAAAAATAT 2356429 ATAAATATAA Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 22 5 0.26 23 2 0.11 24 12 0.63 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (24 bp): TATTTAAATTAAATAAAAATATTT Found at i:2356487 original size:12 final size:13 Alignment explanation
Indices: 2356445--2356490 Score: 51 Period size: 13 Copynumber: 3.5 Consensus size: 13 2356435 ATAAATATAA 2356445 AAAAATGTTTTAAT 1 AAAAAT-TTTTAAT * 2356459 ATAAAA-TTTAAAT 1 A-AAAATTTTTAAT 2356472 AAAAATTTTTAA- 1 AAAAATTTTTAAT 2356484 AAAAATT 1 AAAAATT 2356491 CAAACGAGAG Statistics Matches: 28, Mismatches: 2, Indels: 6 0.78 0.06 0.17 Matches are distributed among these distances: 12 11 0.39 13 12 0.43 14 1 0.04 15 4 0.14 ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39 Consensus pattern (13 bp): AAAAATTTTTAAT Found at i:2357200 original size:13 final size:13 Alignment explanation
Indices: 2357182--2357209 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 2357172 TGGTTTTTCT 2357182 TGCCTCATCGTGA 1 TGCCTCATCGTGA 2357195 TGCCTCATCGTGA 1 TGCCTCATCGTGA 2357208 TG 1 TG 2357210 AACAAGAAAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32 Consensus pattern (13 bp): TGCCTCATCGTGA Found at i:2359103 original size:14 final size:16 Alignment explanation
Indices: 2359077--2359122 Score: 62 Period size: 14 Copynumber: 3.1 Consensus size: 16 2359067 AATAAAATAA 2359077 AAAATTA-TAAATATT 1 AAAATTATTAAATATT 2359092 AAAATT-TT-AATATT 1 AAAATTATTAAATATT * 2359106 AAATTTATTAAATATT 1 AAAATTATTAAATATT 2359122 A 1 A 2359123 TTTTTTAAAA Statistics Matches: 27, Mismatches: 1, Indels: 5 0.82 0.03 0.15 Matches are distributed among these distances: 14 11 0.41 15 9 0.33 16 7 0.26 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (16 bp): AAAATTATTAAATATT Found at i:2359618 original size:24 final size:27 Alignment explanation
Indices: 2359586--2359642 Score: 84 Period size: 24 Copynumber: 2.2 Consensus size: 27 2359576 GTATCATTTG 2359586 ATATAAAAAAT-ATCAT-AATA-TAAA 1 ATATAAAAAATAATCATAAATATTAAA * 2359610 ATATAAAAAATAATTATAAATATTAAA 1 ATATAAAAAATAATCATAAATATTAAA 2359637 ATATAA 1 ATATAA 2359643 TTTAAACTTA Statistics Matches: 29, Mismatches: 1, Indels: 3 0.88 0.03 0.09 Matches are distributed among these distances: 24 11 0.38 25 4 0.14 26 4 0.14 27 10 0.34 ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32 Consensus pattern (27 bp): ATATAAAAAATAATCATAAATATTAAA Found at i:2359629 original size:20 final size:21 Alignment explanation
Indices: 2359600--2359648 Score: 61 Period size: 20 Copynumber: 2.5 Consensus size: 21 2359590 AAAAAATATC 2359600 ATAA-TATAAAATA-TAAAAA 1 ATAATTATAAAATATTAAAAA * 2359619 ATAATTAT-AAATATTAAAAT 1 ATAATTATAAAATATTAAAAA 2359639 ATAATT-TAAA 1 ATAATTATAAA 2359649 CTTAAATTTA Statistics Matches: 26, Mismatches: 1, Indels: 5 0.81 0.03 0.16 Matches are distributed among these distances: 19 10 0.38 20 16 0.62 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (21 bp): ATAATTATAAAATATTAAAAA Found at i:2365936 original size:21 final size:21 Alignment explanation
Indices: 2365903--2365977 Score: 87 Period size: 21 Copynumber: 3.5 Consensus size: 21 2365893 CACTTGATTC * * 2365903 AATTTAATAATTATAATATTT 1 AATTTTATTATTATAATATTT * 2365924 AATTTTATTATTATAATAATT 1 AATTTTATTATTATAATATTT * * 2365945 AATTTTATTATTATCATTTTTT 1 AATTTTATTATTAT-AATATTT 2365967 AAATTTTATTA 1 -AATTTTATTA 2365978 AAATTAATTT Statistics Matches: 46, Mismatches: 6, Indels: 2 0.85 0.11 0.04 Matches are distributed among these distances: 21 32 0.70 22 4 0.09 23 10 0.22 ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59 Consensus pattern (21 bp): AATTTTATTATTATAATATTT Found at i:2366350 original size:65 final size:66 Alignment explanation
Indices: 2366260--2366386 Score: 170 Period size: 65 Copynumber: 1.9 Consensus size: 66 2366250 TATTTCAATA * * * 2366260 ATTTGATATAAATATAATATTTAATTA-TTATTAACATAAATCTAATTTTAATAT-ATATTTTTT 1 ATTTAATATAAATATAATATGTAATTATTTATT-ACATAAAT-AAATTTTAATATAATATTTTTT 2366323 ATC 64 ATC * * 2366326 ATTTAATATAAATATAAT-TGTAATTATTTATTACATATATAAATTTTAATTTAATATTTTT 1 ATTTAATATAAATATAATATGTAATTATTTATTACATAAATAAATTTTAATATAATATTTTT 2366387 AATAATAATT Statistics Matches: 54, Mismatches: 5, Indels: 5 0.84 0.08 0.08 Matches are distributed among these distances: 64 10 0.19 65 22 0.41 66 22 0.41 ACGTcount: A:0.43, C:0.03, G:0.02, T:0.53 Consensus pattern (66 bp): ATTTAATATAAATATAATATGTAATTATTTATTACATAAATAAATTTTAATATAATATTTTTTAT C Found at i:2366529 original size:21 final size:20 Alignment explanation
Indices: 2366506--2366557 Score: 70 Period size: 21 Copynumber: 2.5 Consensus size: 20 2366496 CACTATTACT 2366506 TTTTATCTCATCAAAATTAA 1 TTTTATCTCATCAAAATTAA * 2366526 TTTTA-CAATGATCAAAATTAA 1 TTTTATC--TCATCAAAATTAA 2366547 TTTTATCTCAT 1 TTTTATCTCAT 2366558 ATTAATTTTC Statistics Matches: 27, Mismatches: 2, Indels: 6 0.77 0.06 0.17 Matches are distributed among these distances: 19 1 0.04 20 8 0.30 21 17 0.63 22 1 0.04 ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46 Consensus pattern (20 bp): TTTTATCTCATCAAAATTAA Found at i:2366774 original size:18 final size:17 Alignment explanation
Indices: 2366740--2366794 Score: 55 Period size: 16 Copynumber: 3.4 Consensus size: 17 2366730 TATTTAGAAT 2366740 ATTTTATATTTATATAA 1 ATTTTATATTTATATAA 2366757 ATTTTAATATATTA-AT-A 1 ATTTT-ATAT-TTATATAA * 2366774 A-TTTAT-TTTATATTA 1 ATTTTATATTTATATAA 2366789 ATTTTA 1 ATTTTA 2366795 AAATATATAT Statistics Matches: 33, Mismatches: 0, Indels: 11 0.75 0.00 0.25 Matches are distributed among these distances: 13 3 0.09 14 3 0.09 15 4 0.12 16 7 0.21 17 7 0.21 18 6 0.18 19 3 0.09 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (17 bp): ATTTTATATTTATATAA Found at i:2366814 original size:34 final size:32 Alignment explanation
Indices: 2366737--2366821 Score: 98 Period size: 32 Copynumber: 2.6 Consensus size: 32 2366727 TCATATTTAG * * * 2366737 AATATTTTATATTTATATAAATTTTAATATATT 1 AATAATTTAT-TTTATATTAATTTTAAAATATT 2366770 AATAATTTATTTTATATTAATTTTAAAATATAT 1 AATAATTTATTTTATATTAATTTTAAAATAT-T * * 2366803 ATTTATATTATTTTATATT 1 AATAAT-TTATTTTATATT 2366822 TTAATAATTT Statistics Matches: 45, Mismatches: 5, Indels: 3 0.85 0.09 0.06 Matches are distributed among these distances: 32 19 0.42 33 14 0.31 34 12 0.27 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (32 bp): AATAATTTATTTTATATTAATTTTAAAATATT Found at i:2366825 original size:30 final size:29 Alignment explanation
Indices: 2366742--2366844 Score: 109 Period size: 30 Copynumber: 3.4 Consensus size: 29 2366732 TTTAGAATAT * 2366742 TTTATATTTATATAAATTTTAATATATTAATAA 1 TTTATA-TTATATTAATTTTAATA-ATT-AT-A * 2366775 TTTATTTTATATTAATTTTAA-AATATATA 1 TTTATATTATATTAATTTTAATAAT-TATA * * 2366804 TTTATATTATTTTATATTTTAATAATTTTA 1 TTTATATTATATTA-ATTTTAATAATTATA 2366834 TTTATATTATA 1 TTTATATTATA 2366845 CGTATATAAC Statistics Matches: 61, Mismatches: 6, Indels: 9 0.80 0.08 0.12 Matches are distributed among these distances: 29 13 0.21 30 24 0.39 31 5 0.08 32 14 0.23 33 5 0.08 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (29 bp): TTTATATTATATTAATTTTAATAATTATA Found at i:2367544 original size:16 final size:16 Alignment explanation
Indices: 2367523--2367565 Score: 52 Period size: 16 Copynumber: 2.7 Consensus size: 16 2367513 TCTGAGATAC 2367523 AAGAAAGAAATAAGAA 1 AAGAAAGAAATAAGAA * 2367539 AAGAAAAGAAA-AGGAA 1 AAG-AAAGAAATAAGAA * 2367555 AGGAAAGAAAT 1 AAGAAAGAAAT 2367566 GGGGCTGAAG Statistics Matches: 23, Mismatches: 2, Indels: 4 0.79 0.07 0.14 Matches are distributed among these distances: 15 7 0.30 16 9 0.39 17 7 0.30 ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05 Consensus pattern (16 bp): AAGAAAGAAATAAGAA Found at i:2368985 original size:21 final size:21 Alignment explanation
Indices: 2368955--2368994 Score: 64 Period size: 21 Copynumber: 1.9 Consensus size: 21 2368945 AAAATCATAA 2368955 TAAATTTTAATTT-ATTAATG 1 TAAATTTTAATTTAATTAATG 2368975 TAAACTTTTAATTTAATTAA 1 TAAA-TTTTAATTTAATTAA 2368995 ATATGATTTT Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 20 4 0.22 21 9 0.50 22 5 0.28 ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53 Consensus pattern (21 bp): TAAATTTTAATTTAATTAATG Found at i:2369044 original size:7 final size:7 Alignment explanation
Indices: 2369028--2369057 Score: 53 Period size: 7 Copynumber: 4.4 Consensus size: 7 2369018 ATTATAATAA 2369028 TTTTTA- 1 TTTTTAT 2369034 TTTTTAT 1 TTTTTAT 2369041 TTTTTAT 1 TTTTTAT 2369048 TTTTTAT 1 TTTTTAT 2369055 TTT 1 TTT 2369058 ATACAAATAT Statistics Matches: 23, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 6 6 0.26 7 17 0.74 ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87 Consensus pattern (7 bp): TTTTTAT Found at i:2369094 original size:15 final size:15 Alignment explanation
Indices: 2369074--2369114 Score: 50 Period size: 13 Copynumber: 2.9 Consensus size: 15 2369064 ATATTAATAA 2369074 TTAATATTTAATTTG 1 TTAATATTTAATTTG * 2369089 TTAATA--TAATTTT 1 TTAATATTTAATTTG * 2369102 TTAAAATTTAATT 1 TTAATATTTAATT 2369115 ATATATATGT Statistics Matches: 22, Mismatches: 2, Indels: 4 0.79 0.07 0.14 Matches are distributed among these distances: 13 11 0.50 15 11 0.50 ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59 Consensus pattern (15 bp): TTAATATTTAATTTG Found at i:2369160 original size:122 final size:119 Alignment explanation
Indices: 2368951--2369172 Score: 261 Period size: 122 Copynumber: 1.8 Consensus size: 119 2368941 AAAAAAAATC * * 2368951 ATAATAAATTTTAATTTATTAATGTAAACTTTTAATTTAATTAAATATGATTTTTATTTATTAAA 1 ATAATAAATTTTAATTTATTAATATAAACTTTTAATTTAATTAAATATGATTTTAATTTATTAAA * ** * * 2369016 AAATTATAATAATTTTTATTTTTATTTTTTATTTTTTATTTTATACAAATATTA 66 AAATAATAATAATAATTATTTTTATTATTGATTTTTTATTTTATACAAATATTA * * ** * 2369070 ATAATTAATATTTAATTTGTTAATATAATTTTTTAAAATTTAATTATATAT-ATGTTTAATTTTA 1 ATAATAAAT-TTTAATTTATTAATATAAACTTTT--AATTTAATTAAATATGAT-TTTAA-TTTA 2369134 TT-AAAAATAATAATAATAAATT-TTTTTATTATTGATTTT 61 TTAAAAAATAATAATAAT-AATTATTTTTATTATTGATTTT 2369173 ATAATTTTGT Statistics Matches: 85, Mismatches: 12, Indels: 9 0.80 0.11 0.08 Matches are distributed among these distances: 119 8 0.09 120 20 0.24 121 2 0.02 122 47 0.55 123 8 0.09 ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56 Consensus pattern (119 bp): ATAATAAATTTTAATTTATTAATATAAACTTTTAATTTAATTAAATATGATTTTAATTTATTAAA AAATAATAATAATAATTATTTTTATTATTGATTTTTTATTTTATACAAATATTA Found at i:2369299 original size:31 final size:31 Alignment explanation
Indices: 2369220--2369307 Score: 83 Period size: 31 Copynumber: 2.9 Consensus size: 31 2369210 TATAATATAA * 2369220 ATTT-TTAAAAA-ACTTAATTAA-ATATTATT 1 ATTTATTAAAAATA-TTAATTAATAAATTATT * * 2369249 GTTTATTAAAAATAATAATTAATAAATTATT 1 ATTTATTAAAAATATTAATTAATAAATTATT ** * * 2369280 ATTTATTAAATTTTTTAATTAATTAATT 1 ATTTATTAAAAATATTAATTAATAAATT 2369308 TATAAAAAAA Statistics Matches: 47, Mismatches: 9, Indels: 4 0.78 0.15 0.07 Matches are distributed among these distances: 29 3 0.06 30 14 0.30 31 30 0.64 ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51 Consensus pattern (31 bp): ATTTATTAAAAATATTAATTAATAAATTATT Found at i:2369736 original size:21 final size:21 Alignment explanation
Indices: 2369704--2369746 Score: 61 Period size: 21 Copynumber: 2.0 Consensus size: 21 2369694 ATAAATAATT 2369704 TAATTTTTAATAAAATA-AAA 1 TAATTTTTAATAAAATATAAA * 2369724 TAATTTATTAATAATATATAAA 1 TAATTT-TTAATAAAATATAAA 2369746 T 1 T 2369747 TTATATATTT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 20 6 0.30 21 10 0.50 22 4 0.20 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (21 bp): TAATTTTTAATAAAATATAAA Found at i:2370509 original size:33 final size:33 Alignment explanation
Indices: 2370467--2370540 Score: 93 Period size: 32 Copynumber: 2.3 Consensus size: 33 2370457 AAATAAAATA * 2370467 TTTAA-AAATTTATT-TATTTATTTTTTATCA-AT 1 TTTAATAAATTTATTGTATTTA--TATTATCATAT 2370499 TTTAATAAA-TTATTGTATTTATATTATCATAT 1 TTTAATAAATTTATTGTATTTATATTATCATAT 2370531 TTTAATAAAT 1 TTTAATAAAT 2370541 AATATTTTAA Statistics Matches: 37, Mismatches: 1, Indels: 7 0.82 0.02 0.16 Matches are distributed among these distances: 31 7 0.19 32 21 0.57 33 9 0.24 ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58 Consensus pattern (33 bp): TTTAATAAATTTATTGTATTTATATTATCATAT Found at i:2370512 original size:32 final size:32 Alignment explanation
Indices: 2370467--2370557 Score: 91 Period size: 32 Copynumber: 2.8 Consensus size: 32 2370457 AAATAAAATA 2370467 TTTAA-AAATTTATTTATTTATTTTTTATCA-AT 1 TTTAATAAA-TTATTTATTTA-TTTTTATCATAT * 2370499 TTTAATAAATTATTGTATTTA-TATTATCATAT 1 TTTAATAAATTATT-TATTTATTTTTATCATAT * * 2370531 TTTAATAAATAATATT-TTAATTTTTAT 1 TTTAATAAATTAT-TTATTTATTTTTAT 2370558 TAAATTAATT Statistics Matches: 50, Mismatches: 4, Indels: 10 0.78 0.06 0.16 Matches are distributed among these distances: 31 10 0.20 32 30 0.60 33 10 0.20 ACGTcount: A:0.37, C:0.02, G:0.01, T:0.59 Consensus pattern (32 bp): TTTAATAAATTATTTATTTATTTTTATCATAT Found at i:2375557 original size:3 final size:3 Alignment explanation
Indices: 2375549--2375595 Score: 94 Period size: 3 Copynumber: 15.7 Consensus size: 3 2375539 ACTCTCAAAT 2375549 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT 2375596 TACTTTCCAC Statistics Matches: 44, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 44 1.00 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (3 bp): TTA Found at i:2375823 original size:23 final size:23 Alignment explanation
Indices: 2375764--2375840 Score: 61 Period size: 23 Copynumber: 3.3 Consensus size: 23 2375754 CAATTTAAGT * 2375764 AATATAA-ATTTAAT-TTATTTA 1 AATATAATTTTTAATATTATTTA * * * 2375785 AATTTAATTATAAATATTATTATA 1 AATATAATTTTTAATATTATT-TA * 2375809 AA-ATAATTTTTAATATCATTTCA 1 AATATAATTTTTAATATTATTT-A 2375832 AATAGTAAT 1 AATA-TAAT 2375841 ACAGGTTTTG Statistics Matches: 42, Mismatches: 8, Indels: 8 0.72 0.14 0.14 Matches are distributed among these distances: 21 6 0.14 22 5 0.12 23 22 0.52 24 5 0.12 25 4 0.10 ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48 Consensus pattern (23 bp): AATATAATTTTTAATATTATTTA Found at i:2376071 original size:32 final size:31 Alignment explanation
Indices: 2376014--2376089 Score: 79 Period size: 32 Copynumber: 2.5 Consensus size: 31 2376004 TATAATATAC * 2376014 ATTTTTAAT-TTTTAAAATATATTTTTAATTTA 1 ATTTTTAATAATTTAAAATATATTTTT-A-TTA 2376046 ATTTTTAATAATTTAATAA-AT-TTTTTATTA 1 ATTTTTAATAATTTAA-AATATATTTTTATTA * 2376076 AGTTTTAA-AATTTA 1 ATTTTTAATAATTTA 2376090 GATATAACAT Statistics Matches: 40, Mismatches: 2, Indels: 7 0.82 0.04 0.14 Matches are distributed among these distances: 29 6 0.15 30 10 0.25 31 1 0.03 32 14 0.35 33 7 0.17 34 2 0.05 ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59 Consensus pattern (31 bp): ATTTTTAATAATTTAAAATATATTTTTATTA Found at i:2376103 original size:32 final size:31 Alignment explanation
Indices: 2376034--2376104 Score: 74 Period size: 30 Copynumber: 2.2 Consensus size: 31 2376024 TTTAAAATAT * 2376034 ATTTTTAATTTAATTTTTAATAATTTAATAAA 1 ATTTTT-ATTTAAGTTTTAATAATTTAATAAA * 2376066 TTTTTTA-TTAAGTTTTAA-AATTTAGATATAA 1 ATTTTTATTTAAGTTTTAATAATTTA-ATA-AA 2376097 CATTTTTA 1 -ATTTTTA 2376105 ATATTTAACT Statistics Matches: 33, Mismatches: 3, Indels: 6 0.79 0.07 0.14 Matches are distributed among these distances: 29 6 0.18 30 13 0.39 31 3 0.09 32 11 0.33 ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56 Consensus pattern (31 bp): ATTTTTATTTAAGTTTTAATAATTTAATAAA Found at i:2376291 original size:13 final size:14 Alignment explanation
Indices: 2376264--2376296 Score: 50 Period size: 13 Copynumber: 2.4 Consensus size: 14 2376254 AAATTGAATT * 2376264 AATTTTTTTGTTTA 1 AATTTATTTGTTTA 2376278 AATTTATTTG-TTA 1 AATTTATTTGTTTA 2376291 AATTTA 1 AATTTA 2376297 ATATTTTTAT Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 13 9 0.50 14 9 0.50 ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64 Consensus pattern (14 bp): AATTTATTTGTTTA Found at i:2376304 original size:32 final size:29 Alignment explanation
Indices: 2376262--2376322 Score: 77 Period size: 32 Copynumber: 2.0 Consensus size: 29 2376252 TTAAATTGAA * * 2376262 TTAATTTTTTTGTTTAAATTTATTTGTTAAAT 1 TTAATATTTTTATTT-AATTT-TTT-TTAAAT 2376294 TTAATATTTTTATTTAATTTTTTTTAAAT 1 TTAATATTTTTATTTAATTTTTTTTAAAT 2376323 ATTATAAAAA Statistics Matches: 27, Mismatches: 2, Indels: 3 0.84 0.06 0.09 Matches are distributed among these distances: 29 6 0.22 30 3 0.11 31 5 0.19 32 13 0.48 ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67 Consensus pattern (29 bp): TTAATATTTTTATTTAATTTTTTTTAAAT Found at i:2378659 original size:2 final size:2 Alignment explanation
Indices: 2378654--2378684 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 2378644 ACACACACAC 2378654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 2378685 GTTTGATTAT Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:2381228 original size:11 final size:11 Alignment explanation
Indices: 2381214--2381272 Score: 59 Period size: 11 Copynumber: 5.5 Consensus size: 11 2381204 AATATTAATG 2381214 TAATAATATTT 1 TAATAATATTT * * 2381225 TAATACTTTTT 1 TAATAATATTT 2381236 TAA-ATATATTT 1 TAATA-ATATTT 2381247 TAA-AATATTT 1 TAATAATATTT * * 2381257 TATTAATATAT 1 TAATAATATTT 2381268 TAATA 1 TAATA 2381273 TCAGGCGACC Statistics Matches: 39, Mismatches: 7, Indels: 4 0.78 0.14 0.08 Matches are distributed among these distances: 10 9 0.23 11 30 0.77 ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54 Consensus pattern (11 bp): TAATAATATTT Found at i:2381257 original size:23 final size:22 Alignment explanation
Indices: 2381214--2381268 Score: 60 Period size: 23 Copynumber: 2.4 Consensus size: 22 2381204 AATATTAATG 2381214 TAATAATATTTTAATACTTTT-T 1 TAAT-ATATTTTAATACTTTTAT 2381236 TAAATATATTTTAAAATA-TTTTAT 1 T-AATATATTTT--AATACTTTTAT 2381260 TAATATATT 1 TAATATATT 2381269 AATATCAGGC Statistics Matches: 29, Mismatches: 0, Indels: 7 0.81 0.00 0.19 Matches are distributed among these distances: 22 8 0.28 23 15 0.52 24 6 0.21 ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56 Consensus pattern (22 bp): TAATATATTTTAATACTTTTAT Found at i:2381476 original size:23 final size:23 Alignment explanation
Indices: 2381434--2381485 Score: 68 Period size: 23 Copynumber: 2.3 Consensus size: 23 2381424 TGATAATATT ** * 2381434 AAATATGATATATTATATAATAA 1 AAATATGATATAAAAAATAATAA * 2381457 AAATATGATATAAAAAATAATTA 1 AAATATGATATAAAAAATAATAA 2381480 AAATAT 1 AAATAT 2381486 TACATAATAT Statistics Matches: 25, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 23 25 1.00 ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35 Consensus pattern (23 bp): AAATATGATATAAAAAATAATAA Found at i:2388098 original size:37 final size:39 Alignment explanation
Indices: 2388048--2388127 Score: 119 Period size: 37 Copynumber: 2.1 Consensus size: 39 2388038 CATTTCAAAA * * 2388048 TTAATATATAATTGAATTAAAA-ATAACTTAAAAAT-AT 1 TTAACATACAATTGAATTAAAATATAACTTAAAAATAAT * 2388085 TTAACATACAATTGAATTAAAATATAACTTAATAATAAT 1 TTAACATACAATTGAATTAAAATATAACTTAAAAATAAT 2388124 TTAA 1 TTAA 2388128 TTTTACAGTA Statistics Matches: 38, Mismatches: 3, Indels: 2 0.88 0.07 0.05 Matches are distributed among these distances: 37 20 0.53 38 12 0.32 39 6 0.16 ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38 Consensus pattern (39 bp): TTAACATACAATTGAATTAAAATATAACTTAAAAATAAT Found at i:2389282 original size:6 final size:6 Alignment explanation
Indices: 2389271--2389330 Score: 56 Period size: 6 Copynumber: 10.3 Consensus size: 6 2389261 ATTGATTATT * * 2389271 TAAATA TAAATA -AAATA TAAATTA TGAAATA T-ATTA -AAATT TAAATA 1 TAAATA TAAATA TAAATA TAAA-TA T-AAATA TAAATA TAAATA TAAATA 2389318 TAAATA T-AATA TA 1 TAAATA TAAATA TA 2389331 TTATATATTA Statistics Matches: 44, Mismatches: 4, Indels: 12 0.73 0.07 0.20 Matches are distributed among these distances: 5 15 0.34 6 20 0.45 7 6 0.14 8 3 0.07 ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37 Consensus pattern (6 bp): TAAATA Found at i:2390034 original size:22 final size:21 Alignment explanation
Indices: 2389992--2390034 Score: 50 Period size: 22 Copynumber: 2.0 Consensus size: 21 2389982 TTATTTTTAG * * 2389992 ATAAAAAATCATAATTTTAAA 1 ATAAAAAATCATAAATGTAAA * 2390013 ATAAAAATATTATAAATGTAAA 1 ATAAAAA-ATCATAAATGTAAA 2390035 GATTTATTTA Statistics Matches: 18, Mismatches: 3, Indels: 1 0.82 0.14 0.05 Matches are distributed among these distances: 21 7 0.39 22 11 0.61 ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33 Consensus pattern (21 bp): ATAAAAAATCATAAATGTAAA Found at i:2390595 original size:15 final size:15 Alignment explanation
Indices: 2390575--2390603 Score: 58 Period size: 15 Copynumber: 1.9 Consensus size: 15 2390565 AAATTAATTA 2390575 AAATATAATATAAAT 1 AAATATAATATAAAT 2390590 AAATATAATATAAA 1 AAATATAATATAAA 2390604 ATTTAATTGA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (15 bp): AAATATAATATAAAT Found at i:2390759 original size:20 final size:21 Alignment explanation
Indices: 2390736--2390787 Score: 54 Period size: 22 Copynumber: 2.5 Consensus size: 21 2390726 TTATCAAATA 2390736 ATATATTAAATAT-TATTTTT 1 ATATATTAAATATATATTTTT * ** 2390756 ATATAAATATTTATATATTTTT 1 ATAT-ATTAAATATATATTTTT 2390778 ATA-ATTAAAT 1 ATATATTAAAT 2390788 TTTTATAAAA Statistics Matches: 24, Mismatches: 6, Indels: 4 0.71 0.18 0.12 Matches are distributed among these distances: 20 8 0.33 21 6 0.25 22 10 0.42 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (21 bp): ATATATTAAATATATATTTTT Found at i:2390777 original size:22 final size:24 Alignment explanation
Indices: 2390749--2390794 Score: 69 Period size: 24 Copynumber: 2.0 Consensus size: 24 2390739 TATTAAATAT 2390749 TATTTTTAT-A-TAAATATTTATA 1 TATTTTTATAATTAAATATTTATA * 2390771 TATTTTTATAATTAAATTTTTATA 1 TATTTTTATAATTAAATATTTATA 2390795 AAAATATTAT Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 22 9 0.43 23 1 0.05 24 11 0.52 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (24 bp): TATTTTTATAATTAAATATTTATA Found at i:2390825 original size:36 final size:36 Alignment explanation
Indices: 2390739--2390825 Score: 99 Period size: 36 Copynumber: 2.4 Consensus size: 36 2390729 TCAAATAATA * * 2390739 TATTAAATATTATTTTTATATAAATATTTATATATT 1 TATTAAATATAATTTTTATAAAAATATTTATATATT * 2390775 T-TTATAAT-TAAATTTTTATAAAAATA-TTATTTATT 1 TATTA-AATAT-AATTTTTATAAAAATATTTATATATT 2390810 TATTAAATAATAATTT 1 TATTAAAT-ATAATTT 2390826 AAATTAATTT Statistics Matches: 43, Mismatches: 3, Indels: 10 0.77 0.05 0.18 Matches are distributed among these distances: 35 16 0.37 36 26 0.60 37 1 0.02 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (36 bp): TATTAAATATAATTTTTATAAAAATATTTATATATT Found at i:2391818 original size:21 final size:21 Alignment explanation
Indices: 2391794--2391833 Score: 55 Period size: 21 Copynumber: 1.9 Consensus size: 21 2391784 GATATTTTAA 2391794 TTTA-ATTATAAAAATAATATT 1 TTTATATT-TAAAAATAATATT * 2391815 TTTATATTTTAAAATAATA 1 TTTATATTTAAAAATAATA 2391834 AATCAAATTA Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 21 14 0.82 22 3 0.18 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (21 bp): TTTATATTTAAAAATAATATT Found at i:2402972 original size:18 final size:18 Alignment explanation
Indices: 2402941--2402975 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 2402931 TTAATTAAAA 2402941 AAATTAAATAATTTTTTT 1 AAATTAAATAATTTTTTT * * 2402959 AAATTTAATTATTTTTT 1 AAATTAAATAATTTTTT 2402976 ATATTCATAT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 18 15 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (18 bp): AAATTAAATAATTTTTTT Found at i:2408136 original size:45 final size:49 Alignment explanation
Indices: 2408037--2408145 Score: 113 Period size: 45 Copynumber: 2.3 Consensus size: 49 2408027 AATTAATCAA * ** 2408037 TATATATTTATAATAATATTATATTAAATAAAATAATTATAATTTTATTTT 1 TATATATTTATAATAATATTATATT--ATAAAATAATTATAATATTATAAT 2408088 TATATA-TTATAATAATATT-T-TT-TAAAA-AATTATAAATATTATAAT 1 TATATATTTATAATAATATTATATTATAAAATAATTAT-AATATTATAAT * 2408133 TATA-ATTTTTAAT 1 TATATATTTATAAT 2408146 TTATTCGATG Statistics Matches: 52, Mismatches: 4, Indels: 10 0.79 0.06 0.15 Matches are distributed among these distances: 44 7 0.13 45 23 0.44 48 2 0.04 49 1 0.02 50 13 0.25 51 6 0.12 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (49 bp): TATATATTTATAATAATATTATATTATAAAATAATTATAATATTATAAT Found at i:2409086 original size:24 final size:24 Alignment explanation
Indices: 2409058--2409104 Score: 69 Period size: 24 Copynumber: 2.0 Consensus size: 24 2409048 ATAAATTAAT 2409058 AAATTAAATAATATTAT-TTTATTA 1 AAATTAAATAAT-TTATATTTATTA * 2409082 AAATTAAATTATTTATATTTATT 1 AAATTAAATAATTTATATTTATT 2409105 TTAAAAAAAA Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 23 4 0.19 24 17 0.81 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (24 bp): AAATTAAATAATTTATATTTATTA Found at i:2410626 original size:16 final size:16 Alignment explanation
Indices: 2410591--2410647 Score: 55 Period size: 16 Copynumber: 3.5 Consensus size: 16 2410581 TTTATAAATA 2410591 TATTTAAACTTATTTATAT 1 TATTTAAA-TT-TTT-TAT 2410610 TATTTAAATTTTTTAT 1 TATTTAAATTTTTTAT * * 2410626 TTTTTAAA-TATTTA- 1 TATTTAAATTTTTTAT 2410640 TATTTAAA 1 TATTTAAA 2410648 ATATATTTTA Statistics Matches: 35, Mismatches: 3, Indels: 5 0.81 0.07 0.12 Matches are distributed among these distances: 14 7 0.20 15 5 0.14 16 10 0.29 17 3 0.09 18 2 0.06 19 8 0.23 ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61 Consensus pattern (16 bp): TATTTAAATTTTTTAT Found at i:2411354 original size:17 final size:17 Alignment explanation
Indices: 2411328--2411366 Score: 51 Period size: 17 Copynumber: 2.3 Consensus size: 17 2411318 TAATTATTAA * 2411328 ATATTTAATAAAAATAT 1 ATATTAAATAAAAATAT * 2411345 ATATTAAATATAAATAT 1 ATATTAAATAAAAATAT * 2411362 TTATT 1 ATATT 2411367 CGATATAATT Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 17 19 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (17 bp): ATATTAAATAAAAATAT Found at i:2412034 original size:17 final size:16 Alignment explanation
Indices: 2412009--2412057 Score: 64 Period size: 15 Copynumber: 3.1 Consensus size: 16 2411999 GATTTATATT 2412009 TAAATATATATAAATA 1 TAAATATATATAAATA ** 2412025 T-GTTATATATAAATA 1 TAAATATATATAAATA 2412040 TTAAATATATATAAATA 1 -TAAATATATATAAATA 2412057 T 1 T 2412058 TTTAAAAATA Statistics Matches: 27, Mismatches: 4, Indels: 4 0.77 0.11 0.11 Matches are distributed among these distances: 15 12 0.44 16 3 0.11 17 12 0.44 ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43 Consensus pattern (16 bp): TAAATATATATAAATA Found at i:2412058 original size:17 final size:17 Alignment explanation
Indices: 2412008--2412058 Score: 72 Period size: 17 Copynumber: 3.1 Consensus size: 17 2411998 AGATTTATAT 2412008 TTAAATATATATAAATA 1 TTAAATATATATAAATA 2412025 TGT---TATATATAAATA 1 T-TAAATATATATAAATA 2412040 TTAAATATATATAAATA 1 TTAAATATATATAAATA 2412057 TT 1 TT 2412059 TTAAAAATAA Statistics Matches: 30, Mismatches: 0, Indels: 8 0.79 0.00 0.21 Matches are distributed among these distances: 14 1 0.03 15 13 0.43 17 15 0.50 18 1 0.03 ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45 Consensus pattern (17 bp): TTAAATATATATAAATA Found at i:2412069 original size:32 final size:32 Alignment explanation
Indices: 2412008--2412069 Score: 97 Period size: 32 Copynumber: 1.9 Consensus size: 32 2411998 AGATTTATAT * * 2412008 TTAAATATATATAAATATGTTATATATAAATA 1 TTAAATATATATAAATATGTTAAAAATAAATA * 2412040 TTAAATATATATAAATATTTTAAAAATAAA 1 TTAAATATATATAAATATGTTAAAAATAAA 2412070 AAATCAGGGT Statistics Matches: 27, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 32 27 1.00 ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42 Consensus pattern (32 bp): TTAAATATATATAAATATGTTAAAAATAAATA Found at i:2413887 original size:5 final size:5 Alignment explanation
Indices: 2413877--2413904 Score: 56 Period size: 5 Copynumber: 5.6 Consensus size: 5 2413867 AAAATTTTAA 2413877 AAAAT AAAAT AAAAT AAAAT AAAAT AAA 1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA 2413905 TTTTCATTCG Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 23 1.00 ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18 Consensus pattern (5 bp): AAAAT Found at i:2414069 original size:13 final size:13 Alignment explanation
Indices: 2414051--2414078 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 2414041 AAAATTTTTA 2414051 AATTAATAATAAT 1 AATTAATAATAAT 2414064 AATTAATAATAAT 1 AATTAATAATAAT 2414077 AA 1 AA 2414079 GAAAAAGACA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36 Consensus pattern (13 bp): AATTAATAATAAT Found at i:2415633 original size:2 final size:2 Alignment explanation
Indices: 2415628--2415655 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 2415618 CAACCCCCCA 2415628 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2415656 GAGATTCTTT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2415751 original size:6 final size:6 Alignment explanation
Indices: 2415736--2415772 Score: 56 Period size: 6 Copynumber: 6.2 Consensus size: 6 2415726 AGAAATTTTT * * 2415736 TTATAA TTATAT TTATAG TTATAA TTATAA TTATAA T 1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA T 2415773 AAAATATTAC Statistics Matches: 28, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 28 1.00 ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54 Consensus pattern (6 bp): TTATAA Found at i:2418113 original size:13 final size:14 Alignment explanation
Indices: 2418095--2418143 Score: 70 Period size: 13 Copynumber: 3.8 Consensus size: 14 2418085 TGATTGTGTG 2418095 TATATAT-ATAATA 1 TATATATAATAATA 2418108 TATATATAATAATA 1 TATATATAATAATA 2418122 -ATATATAATAATA 1 TATATATAATAATA 2418135 -ATA-ATAATA 1 TATATATAATA 2418144 CTAAAGTTAA Statistics Matches: 35, Mismatches: 0, Indels: 3 0.92 0.00 0.08 Matches are distributed among these distances: 12 6 0.17 13 23 0.66 14 6 0.17 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (14 bp): TATATATAATAATA Found at i:2418121 original size:3 final size:3 Alignment explanation
Indices: 2418102--2418143 Score: 57 Period size: 3 Copynumber: 13.0 Consensus size: 3 2418092 GTGTATATAT 2418102 ATA ATA TATA TATA ATA ATA ATA TATA ATA ATA ATA ATA ATA 1 ATA ATA -ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA 2418144 CTAAAGTTAA Statistics Matches: 37, Mismatches: 0, Indels: 4 0.90 0.00 0.10 Matches are distributed among these distances: 3 27 0.73 4 10 0.27 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (3 bp): ATA Found at i:2418143 original size:19 final size:17 Alignment explanation
Indices: 2418102--2418140 Score: 71 Period size: 16 Copynumber: 2.4 Consensus size: 17 2418092 GTGTATATAT 2418102 ATAATATATATATAATA 1 ATAATATATATATAATA 2418119 ATAATATATA-ATAATA 1 ATAATATATATATAATA 2418135 ATAATA 1 ATAATA 2418141 ATACTAAAGT Statistics Matches: 22, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 16 12 0.55 17 10 0.45 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (17 bp): ATAATATATATATAATA Found at i:2420718 original size:23 final size:24 Alignment explanation
Indices: 2420688--2420748 Score: 72 Period size: 23 Copynumber: 2.6 Consensus size: 24 2420678 TTTAATGTGG 2420688 TATTTTTTATTTAT-ATATATATA 1 TATTTTTTATTTATAATATATATA * * * 2420711 TATTTTTT-TTTGTAATGTTTATA 1 TATTTTTTATTTATAATATATATA 2420734 TATTTTATTATTTAT 1 TATTTT-TTATTTAT 2420749 TATTATCGCA Statistics Matches: 31, Mismatches: 4, Indels: 4 0.79 0.10 0.10 Matches are distributed among these distances: 22 4 0.13 23 21 0.68 24 2 0.06 25 4 0.13 ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69 Consensus pattern (24 bp): TATTTTTTATTTATAATATATATA Found at i:2422050 original size:2 final size:2 Alignment explanation
Indices: 2422043--2422075 Score: 66 Period size: 2 Copynumber: 16.5 Consensus size: 2 2422033 GTAAAGGGTG 2422043 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 2422076 GTCCCCTTAC Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 31 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:2424402 original size:3 final size:3 Alignment explanation
Indices: 2424394--2424421 Score: 56 Period size: 3 Copynumber: 9.3 Consensus size: 3 2424384 CTTTTGTTTA 2424394 AAT AAT AAT AAT AAT AAT AAT AAT AAT A 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A 2424422 GCCATTGTTG Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 25 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (3 bp): AAT Found at i:2425527 original size:6 final size:6 Alignment explanation
Indices: 2425521--2425573 Score: 88 Period size: 6 Copynumber: 8.8 Consensus size: 6 2425511 TTAGCAAATA * * 2425521 TATATA TATATA TATATG TATATG TATATG TATATG TATATG TATATG 1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG 2425569 TATAT 1 TATAT 2425574 ATAGGGAAAA Statistics Matches: 46, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 6 46 1.00 ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51 Consensus pattern (6 bp): TATATG Found at i:2425548 original size:18 final size:18 Alignment explanation
Indices: 2425518--2425576 Score: 82 Period size: 18 Copynumber: 3.3 Consensus size: 18 2425508 CATTTAGCAA * * 2425518 ATATATATATATATATAT 1 ATATATATGTATATGTAT * 2425536 ATGTATATGTATATGTAT 1 ATATATATGTATATGTAT * 2425554 ATGTATATGTATATGTAT 1 ATATATATGTATATGTAT 2425572 ATATA 1 ATATA 2425577 GGGAAAAAAT Statistics Matches: 37, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 18 37 1.00 ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49 Consensus pattern (18 bp): ATATATATGTATATGTAT Found at i:2426073 original size:9 final size:9 Alignment explanation
Indices: 2426053--2426195 Score: 56 Period size: 8 Copynumber: 15.9 Consensus size: 9 2426043 ATCAGATTTG 2426053 ATATTTTAT 1 ATATTTTAT 2426062 ATATATTT-T 1 ATAT-TTTAT 2426071 ATA-TTTAT 1 ATATTTTAT 2426079 ATTATTTT-T 1 A-TATTTTAT * 2426088 ATATTATA- 1 ATATTTTAT 2426096 ATTATATTTA- 1 A-TAT-TTTAT * * * 2426106 AAATATTAA 1 ATATTTTAT * 2426115 ATA-ATTAT 1 ATATTTTAT * 2426123 ATAATTTA- 1 ATATTTTAT 2426131 ATATTTTA- 1 ATATTTTAT 2426139 ATAATTTATTAT 1 AT-A-TT-TTAT 2426151 ATATATTATAAT 1 ATAT-TT-T-AT 2426163 ATATTTTAT 1 ATATTTTAT 2426172 ATA-TTTAT 1 ATATTTTAT 2426180 AT-TATTTAT 1 ATAT-TTTAT 2426189 AT-TTTTA 1 ATATTTTA 2426196 ATAATTTTTT Statistics Matches: 108, Mismatches: 8, Indels: 37 0.71 0.05 0.24 Matches are distributed among these distances: 7 3 0.03 8 38 0.35 9 36 0.33 10 15 0.14 11 8 0.07 12 8 0.07 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (9 bp): ATATTTTAT Found at i:2426079 original size:17 final size:17 Alignment explanation
Indices: 2426057--2426192 Score: 69 Period size: 16 Copynumber: 8.2 Consensus size: 17 2426047 GATTTGATAT 2426057 TTTATATATATTTTATA 1 TTTATATATATTTTATA 2426074 TTTATAT-TATTTT-TA 1 TTTATATATATTTTATA * * 2426089 TATTATAATTATATTTAAAA 1 T-TTAT-A-TATATTTTATA * * 2426109 TATTAAATA-ATTATATAA 1 T-TTATATATATTTTAT-A * 2426127 TTTA-ATAT-TTTAATAA 1 TTTATATATATTTTAT-A * 2426143 TTTATTATATATATTATA 1 TTTA-TATATATTTTATA 2426161 ---ATATAT-TTTATATA 1 TTTATATATATTT-TATA 2426175 TTTATAT-TA-TTTATA 1 TTTATATATATTTTATA 2426190 TTT 1 TTT 2426193 TTAATAATTT Statistics Matches: 93, Mismatches: 11, Indels: 32 0.68 0.08 0.24 Matches are distributed among these distances: 13 2 0.02 14 9 0.10 15 11 0.12 16 26 0.28 17 19 0.20 18 10 0.11 19 10 0.11 20 6 0.06 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (17 bp): TTTATATATATTTTATA Found at i:2426112 original size:28 final size:28 Alignment explanation
Indices: 2426056--2426112 Score: 71 Period size: 28 Copynumber: 2.0 Consensus size: 28 2426046 AGATTTGATA * * * 2426056 TTTTATATATATTTTATATTTATATTAT 1 TTTTATATATATATTATATTTAAAATAT 2426084 TTTTATAT-TATAATTATATTTAAAATAT 1 TTTTATATATAT-ATTATATTTAAAATAT 2426112 T 1 T 2426113 AAATAATTAT Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 27 3 0.12 28 22 0.88 ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63 Consensus pattern (28 bp): TTTTATATATATATTATATTTAAAATAT Found at i:2426167 original size:32 final size:28 Alignment explanation
Indices: 2426119--2426204 Score: 90 Period size: 28 Copynumber: 3.1 Consensus size: 28 2426109 TATTAAATAA * 2426119 TTATATAATTTA-ATATTTTAATAATTT 1 TTATATTATTTATATATTTTAATAATTT * 2426146 ATTATATATATTATAATATATTTT-AT-ATAT 1 -TTATAT-TATT-T-ATATATTTTAATAATTT 2426176 TTATATTATTTATAT-TTTTAATAATTT 1 TTATATTATTTATATATTTTAATAATTT 2426203 TT 1 TT 2426205 TAAGTTATAT Statistics Matches: 49, Mismatches: 3, Indels: 13 0.75 0.05 0.20 Matches are distributed among these distances: 25 4 0.08 26 6 0.12 27 6 0.12 28 10 0.20 29 9 0.18 30 4 0.08 31 3 0.06 32 7 0.14 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (28 bp): TTATATTATTTATATATTTTAATAATTT Found at i:2426195 original size:17 final size:17 Alignment explanation
Indices: 2426145--2426195 Score: 50 Period size: 17 Copynumber: 3.0 Consensus size: 17 2426135 TTTAATAATT * * * 2426145 TATTATATATATTATAA 1 TATTATTTATATTTTTA * 2426162 TA-TATTTTATATATTTA 1 TATTA-TTTATATTTTTA 2426179 TATTATTTATATTTTTA 1 TATTATTTATATTTTTA 2426196 ATAATTTTTT Statistics Matches: 27, Mismatches: 5, Indels: 4 0.75 0.14 0.11 Matches are distributed among these distances: 16 2 0.07 17 23 0.85 18 2 0.07 ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63 Consensus pattern (17 bp): TATTATTTATATTTTTA Found at i:2426202 original size:25 final size:25 Alignment explanation
Indices: 2426108--2426193 Score: 78 Period size: 24 Copynumber: 3.7 Consensus size: 25 2426098 TATATTTAAA * 2426108 ATATTA-AATA-ATTATATA-ATTT 1 ATATTATAATATATTTTATATATTT * * 2426130 AATATTTTAATA-A-TTTAT-TATAT 1 -ATATTATAATATATTTTATATATTT 2426153 ATATTATAATATATTTTATATATTT 1 ATATTATAATATATTTTATATATTT * 2426178 ATATTAT-TTATATTTT 1 ATATTATAATATATTTT 2426194 TAATAATTTT Statistics Matches: 52, Mismatches: 6, Indels: 9 0.78 0.09 0.13 Matches are distributed among these distances: 22 10 0.19 23 13 0.25 24 18 0.35 25 11 0.21 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (25 bp): ATATTATAATATATTTTATATATTT Found at i:2426272 original size:4 final size:4 Alignment explanation
Indices: 2426263--2426292 Score: 51 Period size: 4 Copynumber: 7.2 Consensus size: 4 2426253 AAATTAAAAT 2426263 TTAA TTAA TTAA TTTAA TTAA TTAA TTAA T 1 TTAA TTAA TTAA -TTAA TTAA TTAA TTAA T 2426293 ATTATTAAAT Statistics Matches: 25, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 4 21 0.84 5 4 0.16 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (4 bp): TTAA Found at i:2426278 original size:13 final size:13 Alignment explanation
Indices: 2426260--2426289 Score: 60 Period size: 13 Copynumber: 2.3 Consensus size: 13 2426250 ATAAAATTAA 2426260 AATTTAATTAATT 1 AATTTAATTAATT 2426273 AATTTAATTAATT 1 AATTTAATTAATT 2426286 AATT 1 AATT 2426290 AATATTATTA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 17 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (13 bp): AATTTAATTAATT Found at i:2426285 original size:17 final size:17 Alignment explanation
Indices: 2426263--2426305 Score: 61 Period size: 17 Copynumber: 2.5 Consensus size: 17 2426253 AAATTAAAAT 2426263 TTAATTAATTAAT-TTAA 1 TTAATTAATTAATATT-A 2426280 TTAATTAATTAATATTA 1 TTAATTAATTAATATTA 2426297 TTAAATTAA 1 TT-AATTAA 2426306 ATTTTAAAAT Statistics Matches: 24, Mismatches: 0, Indels: 3 0.89 0.00 0.11 Matches are distributed among these distances: 17 16 0.67 18 8 0.33 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (17 bp): TTAATTAATTAATATTA Found at i:2432090 original size:19 final size:17 Alignment explanation
Indices: 2432034--2432093 Score: 59 Period size: 19 Copynumber: 3.4 Consensus size: 17 2432024 AAAATAAAAT * * 2432034 ATAATATTTTTATATTTT 1 ATAATATTTTTATA-ATA 2432052 ATAATATATTTTA-AATA 1 ATAATAT-TTTTATAATA 2432069 ATAATATTTTTATTAATAA 1 ATAATATTTTTA-TAAT-A 2432088 ATAATA 1 ATAATA 2432094 ATTCGAATCG Statistics Matches: 36, Mismatches: 2, Indels: 7 0.80 0.04 0.16 Matches are distributed among these distances: 16 5 0.14 17 8 0.22 18 11 0.31 19 12 0.33 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (17 bp): ATAATATTTTTATAATA Found at i:2433169 original size:27 final size:27 Alignment explanation
Indices: 2433139--2433225 Score: 68 Period size: 32 Copynumber: 2.9 Consensus size: 27 2433129 GTATAATTAT 2433139 ATTTAAATTATTTTATTTTTATATAAA 1 ATTTAAATTATTTTATTTTTATATAAA * 2433166 ATTTAATATATTAATAATTTA-TATTATATAAA 1 ATTT-A-A-ATT-AT--TTTATTTTTATATAAA * 2433198 ATTTAAAATATTTATATATTATTATATA 1 ATTTAAATTATTT-TAT-TT-TTATATA 2433226 TTATAATTTT Statistics Matches: 47, Mismatches: 3, Indels: 17 0.70 0.04 0.25 Matches are distributed among these distances: 26 2 0.04 27 6 0.13 28 3 0.06 29 4 0.09 30 11 0.23 31 3 0.06 32 14 0.30 33 4 0.09 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (27 bp): ATTTAAATTATTTTATTTTTATATAAA Found at i:2433186 original size:16 final size:16 Alignment explanation
Indices: 2433165--2433234 Score: 56 Period size: 16 Copynumber: 4.3 Consensus size: 16 2433155 TTTTATATAA 2433165 AATTTAATATATTAAT 1 AATTTAATATATTAAT 2433181 AATTT-ATATTATATAA- 1 AATTTAATA-TAT-TAAT * * 2433197 AATTTAAAATATTTAT 1 AATTTAATATATTAAT * 2433213 ATATTATTATATATT-AT 1 A-ATT-TAATATATTAAT 2433230 AATTT 1 AATTT 2433235 TATCATAATT Statistics Matches: 44, Mismatches: 4, Indels: 13 0.72 0.07 0.21 Matches are distributed among these distances: 15 6 0.14 16 20 0.45 17 11 0.25 18 7 0.16 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (16 bp): AATTTAATATATTAAT Found at i:2433226 original size:32 final size:32 Alignment explanation
Indices: 2433157--2433225 Score: 97 Period size: 32 Copynumber: 2.2 Consensus size: 32 2433147 TATTTTATTT * 2433157 TTATATAAAATTTAATATATTAATAATTTATA 1 TTATATAAAATTTAAAATATTAATAATTTATA * * 2433189 TTATATAAAATTTAAAATATTTAT-ATAT-TA 1 TTATATAAAATTTAAAATATTAATAATTTATA 2433219 TTATATA 1 TTATATA 2433226 TTATAATTTT Statistics Matches: 34, Mismatches: 3, Indels: 2 0.87 0.08 0.05 Matches are distributed among these distances: 30 9 0.26 31 3 0.09 32 22 0.65 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (32 bp): TTATATAAAATTTAAAATATTAATAATTTATA Found at i:2434587 original size:10 final size:10 Alignment explanation
Indices: 2434574--2434603 Score: 51 Period size: 10 Copynumber: 3.0 Consensus size: 10 2434564 TTTAGTTACA 2434574 TTAAAAAATT 1 TTAAAAAATT 2434584 TTAAAAAATT 1 TTAAAAAATT * 2434594 TTAAATAATT 1 TTAAAAAATT 2434604 AATAATTATT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 10 19 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (10 bp): TTAAAAAATT Found at i:2435286 original size:27 final size:26 Alignment explanation
Indices: 2435243--2435316 Score: 76 Period size: 28 Copynumber: 2.8 Consensus size: 26 2435233 TATTTAACTA * * 2435243 TTTAAATAATAATTATAATATAATAT 1 TTTAATTATTAATTATAATATAATAT * * * 2435269 TTTAATTATTATTTTATAATTTTAATTT 1 TTTAATTATTA-ATTATAA-TATAATAT * 2435297 TTTTATTATTAATTATAATA 1 TTTAATTATTAATTATAATA 2435317 ATATTTATTA Statistics Matches: 38, Mismatches: 8, Indels: 4 0.76 0.16 0.08 Matches are distributed among these distances: 26 10 0.26 27 12 0.32 28 16 0.42 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (26 bp): TTTAATTATTAATTATAATATAATAT Found at i:2435305 original size:20 final size:21 Alignment explanation
Indices: 2435267--2435315 Score: 57 Period size: 20 Copynumber: 2.4 Consensus size: 21 2435257 ATAATATAAT 2435267 ATTTTAATTATTATTTTA-TA 1 ATTTTAATTATTATTTTATTA * 2435287 ATTTTAATT-TTTTTATTATTA 1 ATTTTAATTATTATT-TTATTA * 2435308 ATTATAAT 1 ATTTTAAT 2435316 AATATTTATT Statistics Matches: 25, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 19 4 0.16 20 12 0.48 21 9 0.36 ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65 Consensus pattern (21 bp): ATTTTAATTATTATTTTATTA Found at i:2435362 original size:27 final size:26 Alignment explanation
Indices: 2435307--2435363 Score: 62 Period size: 27 Copynumber: 2.1 Consensus size: 26 2435297 TTTTATTATT * * 2435307 AATTATAATAATATTTATTACATTCAA 1 AATTATAATAATATATATTA-ATTAAA 2435334 AATTATAATAAATATAATATT-ATTAAA 1 AATTATAAT-AATAT-ATATTAATTAAA 2435361 AAT 1 AAT 2435364 GTACCTACGA Statistics Matches: 26, Mismatches: 2, Indels: 4 0.81 0.06 0.12 Matches are distributed among these distances: 27 17 0.65 28 5 0.19 29 4 0.15 ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42 Consensus pattern (26 bp): AATTATAATAATATATATTAATTAAA Found at i:2441882 original size:33 final size:35 Alignment explanation
Indices: 2441840--2441904 Score: 100 Period size: 33 Copynumber: 1.9 Consensus size: 35 2441830 AGTTATTTTT 2441840 ATAAAAATATAATT-AATAT-ATTT-TTTGAATTTA 1 ATAAAAATAT-ATTAAATATAATTTATTTGAATTTA 2441873 ATAAAAATATATTAAATATAATTTATTTGAAT 1 ATAAAAATATATTAAATATAATTTATTTGAAT 2441905 AATAATTGAA Statistics Matches: 29, Mismatches: 0, Indels: 4 0.88 0.00 0.12 Matches are distributed among these distances: 32 3 0.10 33 15 0.52 34 4 0.14 35 7 0.24 ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46 Consensus pattern (35 bp): ATAAAAATATATTAAATATAATTTATTTGAATTTA Found at i:2444173 original size:3 final size:3 Alignment explanation
Indices: 2444165--2444206 Score: 59 Period size: 3 Copynumber: 13.7 Consensus size: 3 2444155 TTTTAAACCC 2444165 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AAAT AA- AAT AA 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT AAT AA 2444207 ATTTTAGATG Statistics Matches: 36, Mismatches: 0, Indels: 6 0.86 0.00 0.14 Matches are distributed among these distances: 2 2 0.06 3 29 0.81 4 4 0.11 5 1 0.03 ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29 Consensus pattern (3 bp): AAT Found at i:2444830 original size:14 final size:15 Alignment explanation
Indices: 2444813--2444841 Score: 51 Period size: 15 Copynumber: 2.0 Consensus size: 15 2444803 AATAATTTTT 2444813 ATTTA-ATTTTTAAA 1 ATTTACATTTTTAAA 2444827 ATTTACATTTTTAAA 1 ATTTACATTTTTAAA 2444842 TATACGTACG Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 14 5 0.36 15 9 0.64 ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55 Consensus pattern (15 bp): ATTTACATTTTTAAA Found at i:2447227 original size:24 final size:24 Alignment explanation
Indices: 2447199--2447246 Score: 78 Period size: 24 Copynumber: 2.0 Consensus size: 24 2447189 CTTAACCTAT * * 2447199 AAGTTTACCTTCTTTTCTTAAGAC 1 AAGTTTACCTTCTGTTATTAAGAC 2447223 AAGTTTACCTTCTGTTATTAAGAC 1 AAGTTTACCTTCTGTTATTAAGAC 2447247 CTACTTGATT Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 24 22 1.00 ACGTcount: A:0.27, C:0.19, G:0.10, T:0.44 Consensus pattern (24 bp): AAGTTTACCTTCTGTTATTAAGAC Found at i:2447527 original size:35 final size:35 Alignment explanation
Indices: 2447488--2447603 Score: 178 Period size: 35 Copynumber: 3.3 Consensus size: 35 2447478 TACTAGTAGG 2447488 ATTTTACATCCCAGGAGGATACAAGCACTAATACT 1 ATTTTACATCCCAGGAGGATACAAGCACTAATACT 2447523 ATTTTACATCCCAGGAGGATACAAGCACTAATACT 1 ATTTTACATCCCAGGAGGATACAAGCACTAATACT * * * * * * 2447558 ATTTTACATCCCAGGTGAATATAGGCACTACTAAT 1 ATTTTACATCCCAGGAGGATACAAGCACTAATACT 2447593 ATTTTACATCC 1 ATTTTACATCC 2447604 TAGTAGAATA Statistics Matches: 75, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 35 75 1.00 ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29 Consensus pattern (35 bp): ATTTTACATCCCAGGAGGATACAAGCACTAATACT Found at i:2447613 original size:35 final size:35 Alignment explanation
Indices: 2447488--2447616 Score: 177 Period size: 35 Copynumber: 3.7 Consensus size: 35 2447478 TACTAGTAGG * 2447488 ATTTTACATCCCAGGAGGATACAAGCACTAATACT 1 ATTTTACATCCCAGGAGAATACAAGCACTAATACT * 2447523 ATTTTACATCCCAGGAGGATACAAGCACTAATACT 1 ATTTTACATCCCAGGAGAATACAAGCACTAATACT * * * * * 2447558 ATTTTACATCCCAGGTGAATATAGGCACTACTAAT 1 ATTTTACATCCCAGGAGAATACAAGCACTAATACT * * 2447593 ATTTTACATCCTAGTAGAATACAA 1 ATTTTACATCCCAGGAGAATACAA 2447617 CATCATTTGC Statistics Matches: 83, Mismatches: 11, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 35 83 1.00 ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29 Consensus pattern (35 bp): ATTTTACATCCCAGGAGAATACAAGCACTAATACT Found at i:2447777 original size:35 final size:35 Alignment explanation
Indices: 2447731--2447806 Score: 116 Period size: 35 Copynumber: 2.2 Consensus size: 35 2447721 CAGTGCTATT * * 2447731 TTACATTCTAGGAGAATACAAGTACAAGTAGTATC 1 TTACATTCTAGGACAATACAAGAACAAGTAGTATC * * 2447766 TTACATTCTAGGACAATACAAGAACTAGTAGTATT 1 TTACATTCTAGGACAATACAAGAACAAGTAGTATC 2447801 TTACAT 1 TTACAT 2447807 CCCGTGGGAG Statistics Matches: 37, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 35 37 1.00 ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32 Consensus pattern (35 bp): TTACATTCTAGGACAATACAAGAACAAGTAGTATC Found at i:2450675 original size:2 final size:2 Alignment explanation
Indices: 2450668--2450693 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 2450658 TCAAACTCTA 2450668 AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 2450694 TCTAAATAGA Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2451029 original size:3 final size:3 Alignment explanation
Indices: 2451021--2451056 Score: 72 Period size: 3 Copynumber: 12.0 Consensus size: 3 2451011 GTTAACATTT 2451021 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 2451057 TACATGACTA Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 33 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (3 bp): ATA Found at i:2458168 original size:2 final size:2 Alignment explanation
Indices: 2458161--2458194 Score: 68 Period size: 2 Copynumber: 17.0 Consensus size: 2 2458151 ACTCATAATA 2458161 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2458195 TAATCGATCA Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 32 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2458274 original size:2 final size:2 Alignment explanation
Indices: 2458267--2458298 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 2458257 CAATATCTTT 2458267 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 2458299 GATTAAACGA Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:2458436 original size:3 final size:3 Alignment explanation
Indices: 2458428--2458456 Score: 58 Period size: 3 Copynumber: 9.7 Consensus size: 3 2458418 TTTTAAACAA 2458428 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA 2458457 ATAAATAAAT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 26 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (3 bp): AAT Found at i:2458471 original size:9 final size:10 Alignment explanation
Indices: 2458427--2458468 Score: 56 Period size: 9 Copynumber: 4.6 Consensus size: 10 2458417 CTTTTAAACA 2458427 AAATAATAAT 1 AAATAATAAT 2458437 -AATAATAAT 1 AAATAATAAT 2458446 -AATAATAAT 1 AAATAATAAT 2458455 AAAT-A-AAT 1 AAATAATAAT 2458463 AAATAA 1 AAATAA 2458469 AATTTTAGAT Statistics Matches: 30, Mismatches: 0, Indels: 5 0.86 0.00 0.14 Matches are distributed among these distances: 8 7 0.23 9 20 0.67 10 3 0.10 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (10 bp): AAATAATAAT Done.