Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold36
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4808052
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 18886 characters in sequence are not A, C, G, or T
File 28 of 28
Found at i:4645111 original size:2 final size:2
Alignment explanation
Indices: 4645104--4645131 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4645094 AACGAACAAC
4645104 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4645132 TCCGATTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4646166 original size:48 final size:48
Alignment explanation
Indices: 4646090--4646355 Score: 379
Period size: 48 Copynumber: 5.5 Consensus size: 48
4646080 GGCAGTTCCT
* * * * *
4646090 CTACCTTGGTTGGAATCTGCTCTTCTAGTTTTGTAGGAAGATCCTGCG
1 CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGTAGGAAGATCCTCCA
* *
4646138 CTACTTTGGTTGGAAACTGCTCCTCTAGTTTTGTAGGAAGATCCTCCA
1 CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGTAGGAAGATCCTCCA
* * *
4646186 CTACATTGGTTGGAAACTGCTCCTTTACTTTTGTAAGAAGATCCTCCA
1 CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGTAGGAAGATCCTCCA
* * *
4646234 CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGCAGGAAGATCATCTA
1 CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGTAGGAAGATCCTCCA
* * *
4646282 CTACCTTGGTTGGAAACTGCTCTTCTACTTTTGTAGGAGGATCCACCA
1 CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGTAGGAAGATCCTCCA
*
4646330 CTACCTTGGTTGGAATCTGCTCCTCT
1 CTACCTTGGTTGGAAACTGCTCCTCT
4646356 CTCTTAGTTG
Statistics
Matches: 195, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 195 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (48 bp):
CTACCTTGGTTGGAAACTGCTCCTCTACTTTTGTAGGAAGATCCTCCA
Found at i:4646176 original size:24 final size:24
Alignment explanation
Indices: 4646086--4646319 Score: 111
Period size: 24 Copynumber: 9.8 Consensus size: 24
4646076 CTGAGGCAGT
* * * *
4646086 TCCTCTACCTTGGTTGGAATCTGC
1 TCCTCTACTTTTGTAGGAAACTGC
* * *
4646110 TCTTCTAGTTTTGTAGGAAGA-TCC
1 TCCTCTACTTTTGTAGGAA-ACTGC
* * * *
4646134 TGCGCTACTTTGGTTGGAAACTGC
1 TCCTCTACTTTTGTAGGAAACTGC
* *
4646158 TCCTCTAGTTTTGTAGGAAGA-TCC
1 TCCTCTACTTTTGTAGGAA-ACTGC
* * * *
4646182 TCCACTACATTGGTTGGAAACTGC
1 TCCTCTACTTTTGTAGGAAACTGC
* * *
4646206 TCCTTTACTTTTGTAAGAAGA-TCC
1 TCCTCTACTTTTGTAGGAA-ACTGC
* * * *
4646230 TCCACTACCTTGGTTGGAAACTGC
1 TCCTCTACTTTTGTAGGAAACTGC
*
4646254 TCCTCTACTTTTGCAGGAAGA-T-C
1 TCCTCTACTTTTGTAGGAA-ACTGC
* * *
4646277 AT-CTACTACCTTGGTTGGAAACTGC
1 -TCCT-CTACTTTTGTAGGAAACTGC
*
4646302 TCTTCTACTTTTGTAGGA
1 TCCTCTACTTTTGTAGGA
4646320 GGATCCACCA
Statistics
Matches: 145, Mismatches: 53, Indels: 24
0.65 0.24 0.11
Matches are distributed among these distances:
23 7 0.05
24 133 0.92
25 5 0.03
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (24 bp):
TCCTCTACTTTTGTAGGAAACTGC
Found at i:4653020 original size:32 final size:31
Alignment explanation
Indices: 4652955--4653030 Score: 77
Period size: 32 Copynumber: 2.4 Consensus size: 31
4652945 CATATAATAA
*
4652955 TATATATATATATATATTAAATCATCAAAATT
1 TATATAAATAT-TATATTAAATCATCAAAATT
4652987 TATATAAATATTAT-TTATAAT-ATCAATATATT
1 TATATAAATATTATATTA-AATCATCAA-A-ATT
4653019 TA-ATTAAATATT
1 TATA-TAAATATT
4653031 TAAATTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
30 8 0.21
31 8 0.21
32 23 0.59
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (31 bp):
TATATAAATATTATATTAAATCATCAAAATT
Found at i:4654432 original size:25 final size:26
Alignment explanation
Indices: 4654404--4654457 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
4654394 TTTTGATATT
*
4654404 AATATATTATATTAT-TTTA-TTTAAA
1 AATATATTA-ATTATCATTATTTTAAA
4654429 AATATATTAATTATCATTATTTTAAA
1 AATATATTAATTATCATTATTTTAAA
4654455 AAT
1 AAT
4654458 TTTAAAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 12 0.46
26 9 0.35
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
AATATATTAATTATCATTATTTTAAA
Found at i:4654473 original size:18 final size:17
Alignment explanation
Indices: 4654452--4654493 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
4654442 TCATTATTTT
4654452 AAAAATT-TTAAAGATAA
1 AAAAATTATTAAA-ATAA
4654469 AAAAATTAATTAAAATAA
1 AAAAATT-ATTAAAATAA
4654487 AAAAATT
1 AAAAATT
4654494 GTATTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.30
18 11 0.48
19 5 0.22
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (17 bp):
AAAAATTATTAAAATAA
Found at i:4656265 original size:28 final size:28
Alignment explanation
Indices: 4656234--4656308 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
4656224 GTGATTAATC
*
4656234 TTTACTATTATAAAATAAATTACTGTAT
1 TTTACTATTATAAAATAAATTACTATAT
*
4656262 TTTACTATTATAAAATAAATTATTATAT
1 TTTACTATTATAAAATAAATTACTATAT
*
4656290 TTTA-TATTATAAATTAAAT
1 TTTACTATTATAAAATAAAT
4656309 AATATTAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 14 0.32
28 30 0.68
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (28 bp):
TTTACTATTATAAAATAAATTACTATAT
Found at i:4656319 original size:28 final size:27
Alignment explanation
Indices: 4656227--4656319 Score: 109
Period size: 28 Copynumber: 3.3 Consensus size: 27
4656217 AGTAGTAGTG
4656227 ATTAATCTTTACTATTATAAAATAAATT
1 ATTAAT-TTTACTATTATAAAATAAATT
4656255 ACTGT-ATTTTACTATTATAAAATAAATT
1 A-T-TAATTTTACTATTATAAAATAAATT
*
4656283 ATTATATTTTA-TATTATAAATTAAATAAT
1 ATTA-ATTTTACTATTATAAAATAAAT--T
4656312 ATTAATTT
1 ATTAATTT
4656320 AATTATTAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
26 1 0.02
27 15 0.26
28 33 0.57
29 8 0.14
30 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (27 bp):
ATTAATTTTACTATTATAAAATAAATT
Found at i:4656423 original size:22 final size:23
Alignment explanation
Indices: 4656397--4656441 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
4656387 TTAATATTTT
*
4656397 AATTA-TAATATATTTTTAAAAA
1 AATTACTAATATATATTTAAAAA
* *
4656419 AATTACTTATTTATATTTAAAAA
1 AATTACTAATATATATTTAAAAA
4656442 CTATTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
AATTACTAATATATATTTAAAAA
Found at i:4657017 original size:5 final size:5
Alignment explanation
Indices: 4657007--4657041 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
4656997 TTAGGGTACT
*
4657007 GAAGG GAAGG GAAGG GAAGG GGAGG GAAGG GAAGG
1 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG
4657042 AAGCTCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (5 bp):
GAAGG
Found at i:4657112 original size:6 final size:6
Alignment explanation
Indices: 4657101--4657127 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4657091 GGATGATGGC
4657101 CTGGGA CTGGGA CTGGGA CTGGGA CTG
1 CTGGGA CTGGGA CTGGGA CTGGGA CTG
4657128 AAAAGGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.48, T:0.19
Consensus pattern (6 bp):
CTGGGA
Found at i:4662120 original size:2 final size:2
Alignment explanation
Indices: 4662113--4662165 Score: 58
Period size: 2 Copynumber: 27.0 Consensus size: 2
4662103 TCCTTTATGC
*
4662113 AT AT AT AT AT AT AT AT AT AT AT AT AG AT -T GA- AT GA- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT -AT AT AT AT
4662154 AT AT AT AT AT AT
1 AT AT AT AT AT AT
4662166 TTGTAGATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
1 3 0.07
2 40 0.91
3 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:4664666 original size:3 final size:3
Alignment explanation
Indices: 4664658--4664687 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
4664648 GAGAAATATT
4664658 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4664688 TACGTTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4665333 original size:7 final size:7
Alignment explanation
Indices: 4665317--4665356 Score: 50
Period size: 6 Copynumber: 6.1 Consensus size: 7
4665307 AAAATGCATT
*
4665317 GCAAGCG
1 GCAAGGG
4665324 GCAAGGG
1 GCAAGGG
4665331 GC-AGGG
1 GCAAGGG
4665337 GCAA-GG
1 GCAAGGG
4665343 GCAA-GG
1 GCAAGGG
4665349 GCAAGGG
1 GCAAGGG
4665356 G
1 G
4665357 ACTGCATGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 18 0.60
7 12 0.40
ACGTcount: A:0.28, C:0.17, G:0.55, T:0.00
Consensus pattern (7 bp):
GCAAGGG
Found at i:4666983 original size:2 final size:2
Alignment explanation
Indices: 4666976--4667010 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
4666966 CTCAAGGTGC
*
4666976 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4667011 CATTGTCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4669847 original size:11 final size:11
Alignment explanation
Indices: 4669831--4669856 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4669821 TATTTTTTCA
4669831 TCAAGAATCTT
1 TCAAGAATCTT
4669842 TCAAGAATCTT
1 TCAAGAATCTT
4669853 TCAA
1 TCAA
4669857 AACTGCATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (11 bp):
TCAAGAATCTT
Found at i:4679076 original size:2 final size:2
Alignment explanation
Indices: 4679069--4679097 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4679059 ATTCACATTC
4679069 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4679098 AGTATGCAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4679478 original size:2 final size:2
Alignment explanation
Indices: 4679471--4679505 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
4679461 GAGGGTAGGC
* *
4679471 AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4679506 GATAACGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4681529 original size:16 final size:16
Alignment explanation
Indices: 4681507--4681603 Score: 63
Period size: 17 Copynumber: 5.9 Consensus size: 16
4681497 TTTAATTTAT
4681507 TTAAAATTTTATAAAA
1 TTAAAATTTTATAAAA
* * *
4681523 ATAAAA-TTGATAAAT
1 TTAAAATTTTATAAAA
* *
4681538 TTTAAATTTAACTAAAA
1 TTAAAATTTTA-TAAAA
* *
4681555 AT-AGATTTTAATAAAA
1 TTAAAATTTT-ATAAAA
* *
4681571 TTTAAATTTATTTAAAA
1 TTAAAATTT-TATAAAA
4681588 TTTAAAATTTTATAAA
1 -TTAAAATTTTATAAA
4681604 TAATTATAAT
Statistics
Matches: 60, Mismatches: 15, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
15 11 0.18
16 19 0.32
17 21 0.35
18 9 0.15
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (16 bp):
TTAAAATTTTATAAAA
Found at i:4681760 original size:17 final size:15
Alignment explanation
Indices: 4681747--4681798 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
4681737 TTCAATATAT
4681747 AAAAACAAAAAATAA
1 AAAAACAAAAAATAA
* * *
4681762 TTAAAATAAAACATAA
1 -AAAAACAAAAAATAA
4681778 AAATAACAAAAAAATAA
1 AAA-AAC-AAAAAATAA
4681795 AAAA
1 AAAA
4681799 TAGCATGAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 2 0.07
16 15 0.54
17 11 0.39
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAACAAAAAATAA
Found at i:4681788 original size:21 final size:21
Alignment explanation
Indices: 4681748--4681800 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
4681738 TCAATATATA
*
4681748 AAAACAAAAAATAATTAAAAT
1 AAAACAAAAAATAATCAAAAT
4681769 AAAACATAAAAATAA-C-AAA-
1 AAAACA-AAAAATAATCAAAAT
*
4681788 AAAATAAAAAATA
1 AAAACAAAAAATA
4681801 GCATGAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 7 0.24
19 5 0.17
20 3 0.10
21 6 0.21
22 8 0.28
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (21 bp):
AAAACAAAAAATAATCAAAAT
Found at i:4681900 original size:16 final size:18
Alignment explanation
Indices: 4681869--4681920 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
4681859 ATATATTGTA
*
4681869 AATTATATAAATATATAAT
1 AATT-TATAAAAATATAAT
* *
4681888 -ATTT-TAAACATATTAT
1 AATTTATAAAAATATAAT
4681904 AATTTATAAAAATATAA
1 AATTTATAAAAATATAA
4681921 AAAAATATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 10 0.37
17 5 0.19
18 12 0.44
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTTATAAAAATATAAT
Found at i:4683018 original size:6 final size:7
Alignment explanation
Indices: 4682982--4683022 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
4682972 TATATTAATA
*
4682982 CCATCAC
1 CCATCAT
*
4682989 CCATCAC
1 CCATCAT
4682996 CCATCAT
1 CCATCAT
4683003 CCATCAT
1 CCATCAT
4683010 CCA-CAT
1 CCATCAT
4683016 CCATCAT
1 CCATCAT
4683023 ACATACATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.29, C:0.49, G:0.00, T:0.22
Consensus pattern (7 bp):
CCATCAT
Found at i:4687138 original size:17 final size:19
Alignment explanation
Indices: 4687102--4687139 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
4687092 TTATTTAATT
4687102 ATAAAATATATAAATATTA
1 ATAAAATATATAAATATTA
*
4687121 ATAAAA-ATA-AAATTTTA
1 ATAAAATATATAAATATTA
4687138 AT
1 AT
4687140 TATATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAAAATATATAAATATTA
Found at i:4687896 original size:3 final size:3
Alignment explanation
Indices: 4687890--4687923 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
4687880 AACCTTCCTG
4687890 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
4687924 TCAAATGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:4693875 original size:12 final size:12
Alignment explanation
Indices: 4693858--4693888 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4693848 GTGGATGATA
4693858 GTTCCACAGTTT
1 GTTCCACAGTTT
4693870 GTTCCACAGTTT
1 GTTCCACAGTTT
4693882 GTTCCAC
1 GTTCCAC
4693889 TTTGTATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.29, G:0.16, T:0.39
Consensus pattern (12 bp):
GTTCCACAGTTT
Found at i:4694127 original size:99 final size:97
Alignment explanation
Indices: 4693968--4694158 Score: 321
Period size: 99 Copynumber: 1.9 Consensus size: 97
4693958 CATTTTTTTC
*
4693968 TATTATATTGTCTATTTTTATACTGCTATTGAAAATATGGGCTCAGCAATTTGAATGGGTTTGTG
1 TATTATATTCTCTATTTTTATACTGCTATTGAAAATATGGGCTCAGCAATTTGAATGGGTTTGTG
4694033 AGTAATTTAATTTATTATTTCAGGTCTTGGAAA
66 AGTAATTTAATTTATTA-TTCAGGTCTTGGAAA
* *
4694066 TATTATATTCTTTA-TTTTATACTGCTATTGAAAATATTTGGGCTCAGCAATTTTAATGGGTTTG
1 TATTATATTCTCTATTTTTATACTGCTATTGAAAATA--TGGGCTCAGCAATTTGAATGGGTTTG
4694130 TGAGTAATTTAATTTATTATTCAGGTCTT
64 TGAGTAATTTAATTTATTATTCAGGTCTT
4694159 TGATCTCCAT
Statistics
Matches: 88, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
97 22 0.25
98 22 0.25
99 44 0.50
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (97 bp):
TATTATATTCTCTATTTTTATACTGCTATTGAAAATATGGGCTCAGCAATTTGAATGGGTTTGTG
AGTAATTTAATTTATTATTCAGGTCTTGGAAA
Found at i:4701214 original size:3 final size:3
Alignment explanation
Indices: 4701206--4701232 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
4701196 AGCTTAATTA
4701206 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
4701233 TATTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4701237 original size:3 final size:3
Alignment explanation
Indices: 4701231--4701267 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
4701221 AATAATAATA
*
4701231 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4701268 AAATTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:4705649 original size:6 final size:6
Alignment explanation
Indices: 4705640--4705664 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4705630 AAGAGAAAGA
4705640 GTAAAT GTAAAT GTAAAT GTAAAT G
1 GTAAAT GTAAAT GTAAAT GTAAAT G
4705665 AAGTTGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (6 bp):
GTAAAT
Found at i:4714883 original size:3 final size:3
Alignment explanation
Indices: 4714875--4714902 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
4714865 TTTTCTTTAT
4714875 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4714903 AAACGTTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:4715773 original size:7 final size:6
Alignment explanation
Indices: 4715736--4715779 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
4715726 TTTCTTATCT
*
4715736 TTACAA TTACAA TTACAA TTACAA CTACAA CTTACAA CTTACAA
1 TTACAA TTACAA TTACAA TTACAA TTACAA -TTACAA -TTACAA
4715780 GAAGAACACA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 23 0.66
7 12 0.34
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (6 bp):
TTACAA
Found at i:4716499 original size:16 final size:16
Alignment explanation
Indices: 4716463--4716497 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4716453 ATACATGAAA
4716463 TTTTA-AAAATTAATT
1 TTTTATAAAATTAATT
4716478 TTTTATAAAATTATATT
1 TTTTATAAAATTA-ATT
4716495 TTT
1 TTT
4716498 ATGAGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 7 0.39
17 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTTATAAAATTAATT
Found at i:4718567 original size:2 final size:2
Alignment explanation
Indices: 4718560--4718591 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4718550 CCCACCGTGG
4718560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4718592 TATTTGTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4722276 original size:2 final size:2
Alignment explanation
Indices: 4722269--4722304 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
4722259 TTTGAAAAGC
* *
4722269 AT AT AT AT GT AT AT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4722305 TCTATTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4722571 original size:16 final size:15
Alignment explanation
Indices: 4722552--4722644 Score: 89
Period size: 16 Copynumber: 5.9 Consensus size: 15
4722542 TAATTTTAGG
4722552 TTAAGATTATTTTAAA
1 TTAA-ATTATTTTAAA
*
4722568 TTAAA-AATTTTAAA
1 TTAAATTATTTTAAA
4722582 TTTTAAATTATTTTAAA
1 --TTAAATTATTTTAAA
* *
4722599 TTTATATTATTTTAAGT
1 -TTAAATTATTTTAA-A
*
4722616 TTAAATTATTTTAATT
1 TTAAATTATTTTAA-A
4722632 TTAAATTATTTTA
1 TTAAATTATTTTA
4722645 TATTTGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
14 8 0.12
15 1 0.01
16 50 0.75
17 8 0.12
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTATTTTAAA
Found at i:4722620 original size:22 final size:22
Alignment explanation
Indices: 4722593--4722635 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4722583 TTTAAATTAT
4722593 TTTAAATTTATATT-ATTTTAAG
1 TTTAAA-TTATATTAATTTTAAG
*
4722615 TTTAAATTATTTTAATTTTAA
1 TTTAAATTATATTAATTTTAA
4722636 ATTATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTAAATTATATTAATTTTAAG
Found at i:4722656 original size:16 final size:16
Alignment explanation
Indices: 4722637--4722671 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
4722627 TAATTTTAAA
4722637 TTATTTTATATTTGAG
1 TTATTTTATATTTGAG
4722653 TTATTTTATATTTGAG
1 TTATTTTATATTTGAG
4722669 TTA
1 TTA
4722672 ATCAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (16 bp):
TTATTTTATATTTGAG
Found at i:4722660 original size:32 final size:32
Alignment explanation
Indices: 4722539--4722644 Score: 110
Period size: 32 Copynumber: 3.3 Consensus size: 32
4722529 GTGGCGGCTG
* *
4722539 AATTAATTTT-AGGTTAAGATTATTTTAA-ATTA
1 AATT-ATTTTAAGTTTAA-ATTATTTTAATTTTA
* * *
4722571 AA-AATTTTAAATTTTAAATTATTTTAAATTTA
1 AATTATTTT-AAGTTTAAATTATTTTAATTTTA
*
4722603 TATTATTTTAAGTTTAAATTATTTTAATTTTA
1 AATTATTTTAAGTTTAAATTATTTTAATTTTA
4722635 AATTATTTTA
1 AATTATTTTA
4722645 TATTTGAGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
30 5 0.08
31 10 0.16
32 41 0.67
33 5 0.08
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (32 bp):
AATTATTTTAAGTTTAAATTATTTTAATTTTA
Found at i:4722660 original size:48 final size:47
Alignment explanation
Indices: 4722557--4722649 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 47
4722547 TTAGGTTAAG
4722557 ATTATTTTAAATTAAAAATTTTAAATTTTAAATTATTTTAAATTTAT
1 ATTATTTTAAATTAAAAATTTTAAATTTTAAATTATTTTAAATTTAT
* * *
4722604 ATTATTTTAAGTTTAAATTATTTT-AATTTTAAATTATTTTATATTT
1 ATTATTTTAA-ATTAAA-AATTTTAAATTTTAAATTATTTTAAATTT
4722650 GAGTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
47 10 0.24
48 26 0.63
49 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (47 bp):
ATTATTTTAAATTAAAAATTTTAAATTTTAAATTATTTTAAATTTAT
Found at i:4722680 original size:48 final size:48
Alignment explanation
Indices: 4722579--4722680 Score: 109
Period size: 48 Copynumber: 2.1 Consensus size: 48
4722569 TAAAAATTTT
* *
4722579 AAATTTTAAATTATTTTAAATTTATATTATTTTAAGTTTAAATTATTT
1 AAATTTTAAATTATTTTAAATTTATATTATTTTAAGTTTAAATTAATC
* * * * *
4722627 TAATTTTAAATTATTTTATATTTGA-GTTATTTTATA-TTTGAGTTAATC
1 AAATTTTAAATTATTTTAAATTT-ATATTATTTTA-AGTTTAAATTAATC
4722675 AAATTT
1 AAATTT
4722681 AATATTCAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
48 42 0.95
49 2 0.05
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (48 bp):
AAATTTTAAATTATTTTAAATTTATATTATTTTAAGTTTAAATTAATC
Found at i:4723538 original size:17 final size:16
Alignment explanation
Indices: 4723481--4723538 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
4723471 TCGTTTCGGA
*
4723481 TTTGAATTATTTTAAA
1 TTTGAATTATTTTAAG
* *
4723497 TTTAAATCATTTTAAG
1 TTTGAATTATTTTAAG
4723513 TTT-AGATTATTTTTAAG
1 TTTGA-ATTA-TTTTAAG
4723530 TTTGAATTA
1 TTTGAATTA
4723539 GTCGATTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 1 0.03
16 19 0.54
17 14 0.40
18 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (16 bp):
TTTGAATTATTTTAAG
Found at i:4724139 original size:5 final size:5
Alignment explanation
Indices: 4724129--4724159 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
4724119 CAGTAAAATA
*
4724129 TTCTT TTCTT TTCTT TTCTT TTCTC TTCTT T
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT T
4724160 AACGTACATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTCTT
Found at i:4733048 original size:3 final size:3
Alignment explanation
Indices: 4733027--4733070 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
4733017 CTGACTTTGT
* *
4733027 TGC TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
4733071 AGGCGTACAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.27, G:0.34, T:0.39
Consensus pattern (3 bp):
TGC
Found at i:4733544 original size:23 final size:23
Alignment explanation
Indices: 4733518--4733563 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
4733508 AAAGTGCGTC
4733518 ATAAAAAAAAATTAAAATATTAT
1 ATAAAAAAAAATTAAAATATTAT
** *
4733541 ATAAAATGAAATTAATATATTAT
1 ATAAAAAAAAATTAAAATATTAT
4733564 TTAATTGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
ATAAAAAAAAATTAAAATATTAT
Found at i:4733604 original size:12 final size:12
Alignment explanation
Indices: 4733577--4733624 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
4733567 ATTGTTTAAT
* *
4733577 TATAATTGAATT
1 TATAATTAAATA
*
4733589 TATAATTAGATA
1 TATAATTAAATA
*
4733601 TATAA-AAAATA
1 TATAATTAAATA
4733612 TATAATTAAATA
1 TATAATTAAATA
4733624 T
1 T
4733625 TTTAATTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
11 9 0.31
12 20 0.69
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (12 bp):
TATAATTAAATA
Found at i:4733964 original size:16 final size:18
Alignment explanation
Indices: 4733946--4733985 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
4733936 TTTTTATAAA
4733946 ATAATATGATACAAAAAT
1 ATAATATGATACAAAAAT
4733964 ATAAATATGATAC-AAAAT
1 AT-AATATGATACAAAAAT
4733982 ATAA
1 ATAA
4733986 ATATTTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.10
18 9 0.43
19 10 0.48
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
ATAATATGATACAAAAAT
Found at i:4733971 original size:6 final size:6
Alignment explanation
Indices: 4733960--4734082 Score: 55
Period size: 6 Copynumber: 20.5 Consensus size: 6
4733950 TATGATACAA
* *
4733960 AAATAT AAATAT -GATACA AAATAT AAATATTT CAAAT-T -AATAT -AATAT
1 AAATAT AAATAT AAATA-T AAATAT AAATA--T -AAATAT AAATAT AAATAT
** * * *
4734008 AAATTATT AATATAT AAATAT TTATTT ATAATTT AAATAT AATTAT AAA-AT
1 AAA-TA-T AA-ATAT AAATAT AAATAT A-AATAT AAATAT AAATAT AAATAT
4734059 -AATA- AAATAT -AATAT AAATAT AAA
1 AAATAT AAATAT AAATAT AAATAT AAA
4734083 AATTATTATA
Statistics
Matches: 90, Mismatches: 12, Indels: 30
0.68 0.09 0.23
Matches are distributed among these distances:
4 5 0.06
5 21 0.23
6 40 0.44
7 13 0.14
8 6 0.07
9 5 0.06
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.39
Consensus pattern (6 bp):
AAATAT
Found at i:4733980 original size:18 final size:19
Alignment explanation
Indices: 4733948--4733989 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 19
4733938 TTTATAAAAT
4733948 AATATGATACAAAAATATA
1 AATATGATACAAAAATATA
4733967 AATATGATAC-AAAATATA
1 AATATGATACAAAAATATA
4733985 AATAT
1 AATAT
4733990 TTCAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (19 bp):
AATATGATACAAAAATATA
Found at i:4734048 original size:11 final size:11
Alignment explanation
Indices: 4734034--4734081 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
4734024 AATATTTATT
4734034 TATAATTTAAA
1 TATAATTTAAA
4734045 TATAATTATAAA
1 TATAATT-TAAA
*
4734057 -ATAA-TAAAA
1 TATAATTTAAA
*
4734066 TATAATATAAA
1 TATAATTTAAA
4734077 TATAA
1 TATAA
4734082 AAATTATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 3 0.10
10 5 0.16
11 19 0.61
12 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TATAATTTAAA
Found at i:4734053 original size:21 final size:20
Alignment explanation
Indices: 4733995--4734085 Score: 59
Period size: 19 Copynumber: 4.7 Consensus size: 20
4733985 AATATTTCAA
*
4733995 ATTAATATA-ATATA-AATT
1 ATTAATATATAAATATAATT
4734013 ATTAATATATAAATAT--TT
1 ATTAATATATAAATATAATT
* *
4734031 ATTTATAATTTAAATATAATT
1 ATTAAT-ATATAAATATAATT
*
4734052 A-TAAAATAATAAAATATAA-T
1 ATTAATAT-AT-AAATATAATT
* *
4734072 ATAAATATAAAAAT
1 ATTAATATATAAAT
4734086 TATTATATTT
Statistics
Matches: 56, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
18 16 0.29
19 19 0.34
20 6 0.11
21 15 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTAATATATAAATATAATT
Found at i:4734574 original size:20 final size:23
Alignment explanation
Indices: 4734535--4734589 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 23
4734525 AAATAATTTA
4734535 TAATAATAATAATATATTTAATT
1 TAATAATAATAATATATTTAATT
*
4734558 TAATAAT-ATAAT-T-TTTAATA
1 TAATAATAATAATATATTTAATT
4734578 TAA-AATTAATAA
1 TAATAA-TAATAA
4734590 ATTAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 2 0.07
20 10 0.34
21 5 0.17
22 5 0.17
23 7 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAATAATAATAATATATTTAATT
Found at i:4739333 original size:3 final size:3
Alignment explanation
Indices: 4739325--4739361 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
4739315 TCGAAAGAAT
4739325 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
4739362 CACTACTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4739475 original size:21 final size:21
Alignment explanation
Indices: 4739434--4739476 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
4739424 TTATTAATAG
* *
4739434 TAAATTTTTATAATTTTTAAT
1 TAAATTTTTATAAGTTATAAT
4739455 TAAA-TTTTATTAAGTTATAAT
1 TAAATTTTTA-TAAGTTATAAT
4739476 T
1 T
4739477 TTTTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TAAATTTTTATAAGTTATAAT
Found at i:4739797 original size:13 final size:13
Alignment explanation
Indices: 4739779--4739803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4739769 GATGGATTAC
4739779 ATTATTTAAATAT
1 ATTATTTAAATAT
4739792 ATTATTTAAATA
1 ATTATTTAAATA
4739804 AAAATAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATTTAAATAT
Found at i:4740137 original size:16 final size:16
Alignment explanation
Indices: 4740118--4740217 Score: 85
Period size: 16 Copynumber: 6.1 Consensus size: 16
4740108 TTACATGAAA
4740118 AATATATATATATATT
1 AATATATATATATATT
*
4740134 AATATATAATATAAATAT
1 AATATAT-ATATATAT-T
* *
4740152 AATATAAAAATA-ATT
1 AATATATATATATATT
* * *
4740167 AAATAAATATAAATATA
1 -AATATATATATATATT
4740184 AATATATATATATATT
1 AATATATATATATATT
* * *
4740200 TATAAAAATATATATT
1 AATATATATATATATT
4740216 AA
1 AA
4740218 CAAATTATTA
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
15 1 0.02
16 44 0.68
17 13 0.20
18 7 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATATATATATATATT
Found at i:4740233 original size:2 final size:2
Alignment explanation
Indices: 4740119--4740214 Score: 60
Period size: 2 Copynumber: 51.0 Consensus size: 2
4740109 TACATGAAAA
*
4740119 AT AT AT AT AT AT AT -T A- AT AT AT A- AT AT AA AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
4740157 AA AA AT A- AT -T AA AT AA AT AT AA AT AT AA AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
4740197 AT TT AT AA AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
4740215 TAACAAATTA
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
1 6 0.08
2 66 0.92
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:4740286 original size:27 final size:27
Alignment explanation
Indices: 4740224--4740290 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 27
4740214 TTAACAAATT
4740224 ATTAATATATAAAATTTTATAATAATAA
1 ATTAA-ATATAAAATTTTATAATAATAA
* *
4740252 ATTAAATATAATATTTTAATATTATATAA
1 ATTAAATATAAAATTTT-ATAATA-ATAA
4740281 A-T-AATATAAA
1 ATTAAATATAAA
4740291 CACAAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 18 0.53
28 11 0.32
29 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
ATTAAATATAAAATTTTATAATAATAA
Found at i:4741612 original size:12 final size:12
Alignment explanation
Indices: 4741595--4741627 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4741585 TTGGTCAGTC
4741595 TAGAAAATACTT
1 TAGAAAATACTT
*
4741607 TAGAAAATAGTT
1 TAGAAAATACTT
4741619 TAGAAAATA
1 TAGAAAATA
4741628 TAAAAATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (12 bp):
TAGAAAATACTT
Found at i:4743937 original size:23 final size:24
Alignment explanation
Indices: 4743908--4743983 Score: 75
Period size: 26 Copynumber: 3.1 Consensus size: 24
4743898 TATAATTTTA
4743908 ATAAATAT-ATTTTATTATTTAAT
1 ATAAATATAATTTTATTATTTAAT
*
4743931 ATAAATATAATTTTTAATTATTTATT
1 ATAAATATAA-TTTT-ATTATTTAAT
* *
4743957 ATATATATTGATTTT-TTAATTTAAT
1 ATAAATA-TAATTTTATT-ATTTAAT
4743982 AT
1 AT
4743984 CTTTGATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
23 8 0.18
24 3 0.07
25 12 0.27
26 19 0.43
27 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (24 bp):
ATAAATATAATTTTATTATTTAAT
Found at i:4744482 original size:2 final size:2
Alignment explanation
Indices: 4744475--4744512 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4744465 GTCCTCGTCA
4744475 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4744513 CATTCGTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4748696 original size:3 final size:3
Alignment explanation
Indices: 4748688--4748722 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
4748678 TTGAAACTTT
4748688 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4748723 TATTAATTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4749836 original size:9 final size:9
Alignment explanation
Indices: 4749822--4749849 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
4749812 TGTGTGTATA
4749822 TAACAATAT
1 TAACAATAT
4749831 TAACAATAT
1 TAACAATAT
4749840 TAACAATAT
1 TAACAATAT
4749849 T
1 T
4749850 GGCTTGTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.36
Consensus pattern (9 bp):
TAACAATAT
Found at i:4753439 original size:4 final size:4
Alignment explanation
Indices: 4753430--4753460 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
4753420 ACCATGTATT
4753430 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTA
4753461 TTACTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:4756941 original size:70 final size:70
Alignment explanation
Indices: 4756828--4756963 Score: 218
Period size: 70 Copynumber: 1.9 Consensus size: 70
4756818 ATAGATACCT
*
4756828 TTCATTACCCTCATATCTCCAAATTGAAATCAGCTTAAATCATGAACGCCTAGTAATTCCATGAC
1 TTCATTACCCTCATATCTCCAAATTGAAATCAGCTTAAATCATGAACGCCTAATAATTCCATGAC
4756893 TAACA
66 TAACA
* * * * *
4756898 TTCATTATCCTGATATTTCCAAATTGAAATCAGCTTACATCATGAACTCCTAATAATTCCATGAC
1 TTCATTACCCTCATATCTCCAAATTGAAATCAGCTTAAATCATGAACGCCTAATAATTCCATGAC
4756963 T
66 T
4756964 GCAGGTAACC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (70 bp):
TTCATTACCCTCATATCTCCAAATTGAAATCAGCTTAAATCATGAACGCCTAATAATTCCATGAC
TAACA
Found at i:4761148 original size:25 final size:24
Alignment explanation
Indices: 4761105--4761162 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
4761095 ATTTATTTCA
4761105 TTTTATTTTTTATAATTTATAATTG
1 TTTTA-TTTTTATAATTTATAATTG
* **
4761130 TTCTTATTTTTATATTTTATGTTTG
1 TT-TTATTTTTATAATTTATAATTG
4761155 TTTTATTT
1 TTTTATTT
4761163 AGTAAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 6 0.21
25 20 0.69
26 3 0.10
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (24 bp):
TTTTATTTTTATAATTTATAATTG
Found at i:4761221 original size:25 final size:26
Alignment explanation
Indices: 4761188--4761236 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
4761178 TATTTATATA
*
4761188 TTTATATTATTTTTTTATCATATTAT
1 TTTATATTATTTTTATATCATATTAT
*
4761214 TTTA-ATTATTTTTATATTATATT
1 TTTATATTATTTTTATATCATATT
4761237 TATATCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTATATTATTTTTATATCATATTAT
Found at i:4763140 original size:20 final size:20
Alignment explanation
Indices: 4763115--4763168 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
4763105 CTACCACTGT
*
4763115 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
4763135 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
4763155 TTGTATCGATACAT
1 TTGTATCGATACAT
4763169 TGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:4769497 original size:20 final size:19
Alignment explanation
Indices: 4769461--4769513 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
4769451 TTACAAATTT
*
4769461 CTTCATTTTTACTTCAAAACA
1 CTTCATTTTT-CATCAAAA-A
4769482 CTTCATTTTTCATCAAAAA
1 CTTCATTTTTCATCAAAAA
*
4769501 CTTTTATTTTTCA
1 C-TTCATTTTTCA
4769514 AAATCCAAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 17 0.59
21 10 0.34
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (19 bp):
CTTCATTTTTCATCAAAAA
Found at i:4771110 original size:44 final size:44
Alignment explanation
Indices: 4771024--4771162 Score: 224
Period size: 44 Copynumber: 3.1 Consensus size: 44
4771014 TTTGTAAATA
* *
4771024 AAATAAATTTTACTTTGAAAAGGGGGGGGGGAAATATTGTTTTGAG
1 AAATAAATTTTGCTTTGAAAA--GGGGGGAGAAATATTGTTTTGAG
*
4771070 AAATAAATTTTGCTTCGAAAAGGGGGGAGAAATATTGTTTTGAG
1 AAATAAATTTTGCTTTGAAAAGGGGGGAGAAATATTGTTTTGAG
*
4771114 AAATAAATTTTGCTTTGAAAATGGGGGAGAAATATTGTTTTGAG
1 AAATAAATTTTGCTTTGAAAAGGGGGGAGAAATATTGTTTTGAG
4771158 AAATA
1 AAATA
4771163 TTATAAATTT
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 69 0.78
46 19 0.22
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (44 bp):
AAATAAATTTTGCTTTGAAAAGGGGGGAGAAATATTGTTTTGAG
Found at i:4771839 original size:19 final size:19
Alignment explanation
Indices: 4771815--4771951 Score: 82
Period size: 20 Copynumber: 6.8 Consensus size: 19
4771805 GTATCGATAT
4771815 ATTGTATCGATACATGATC-
1 ATTGTATCGATACATGA-CA
4771834 ATTGTATCGATACATGGACA
1 ATTGTATCGATACAT-GACA
*
4771854 ATTGTATCTATACATGA-A
1 ATTGTATCGATACATGACA
* * * * * *
4771872 ACTGGCAGTAGCTACCTTACCA
1 A-TTGTA-TCGATACATGA-CA
4771894 CTATTTGTATCGATACATGGTAC-
1 --A-TTGTATCGATACAT-G-ACA
*
4771917 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGA-CA
4771937 ATTGTATCGATACAT
1 ATTGTATCGATACAT
4771952 TGCTTGTAAC
Statistics
Matches: 90, Mismatches: 16, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
18 3 0.03
19 22 0.24
20 51 0.57
21 1 0.01
22 1 0.01
23 6 0.07
24 5 0.06
25 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:4771923 original size:20 final size:20
Alignment explanation
Indices: 4771898--4771951 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
4771888 TTACCACTAT
*
4771898 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
4771918 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
4771938 TTGTATCGATACAT
1 TTGTATCGATACAT
4771952 TGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:4776387 original size:7 final size:7
Alignment explanation
Indices: 4776375--4776399 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4776365 AATAATTATT
4776375 TAAACCC
1 TAAACCC
4776382 TAAACCC
1 TAAACCC
4776389 TAAACCC
1 TAAACCC
4776396 TAAA
1 TAAA
4776400 TAGAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:4778869 original size:2 final size:2
Alignment explanation
Indices: 4778862--4778901 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
4778852 CATTTAACCG
*
4778862 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4778902 TTCTTTTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:4783997 original size:16 final size:16
Alignment explanation
Indices: 4783983--4784142 Score: 130
Period size: 16 Copynumber: 10.0 Consensus size: 16
4783973 CGAACTGATT
*
4783983 CGAACTCGAAATGATC
1 CGAACTCGAAATGACC
*
4783999 CGAACTCGAAATGACA
1 CGAACTCGAAATGACC
* *
4784015 CGAA-TCCAGAATGACT
1 CGAACTCGA-AATGACC
* * *
4784031 CGAACCCTAAATGACT
1 CGAACTCGAAATGACC
*
4784047 CGAA-TCCGAAATGTCC
1 CGAACT-CGAAATGACC
4784063 CGAA-TCCGAAATGACC
1 CGAACT-CGAAATGACC
4784079 CGAA-TCCGAAATGACC
1 CGAACT-CGAAATGACC
* *
4784095 CGAACTTGAAATGATC
1 CGAACTCGAAATGACC
* * *
4784111 TGAATTCGAAATGATC
1 CGAACTCGAAATGACC
*
4784127 CGAACCCGAAATGACC
1 CGAACTCGAAATGACC
4784143 TGAATAATTA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
15 3 0.03
16 114 0.95
17 3 0.03
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.17
Consensus pattern (16 bp):
CGAACTCGAAATGACC
Found at i:4784035 original size:32 final size:32
Alignment explanation
Indices: 4783989--4784141 Score: 150
Period size: 32 Copynumber: 4.8 Consensus size: 32
4783979 GATTCGAACT
*
4783989 CGAAATGATCCGAACTCGAAATGACACGAATC
1 CGAAATGACCCGAACTCGAAATGACACGAATC
* * * *
4784021 C-AGAATGACTCGAACCCTAAATGACTCGAATC
1 CGA-AATGACCCGAACTCGAAATGACACGAATC
* *
4784053 CGAAATGTCCCGAA-TCCGAAATGACCCGAATC
1 CGAAATGACCCGAACT-CGAAATGACACGAATC
* * *
4784085 CGAAATGACCCGAACTTGAAATGATC-TGAATT
1 CGAAATGACCCGAACTCGAAATGA-CACGAATC
* *
4784117 CGAAATGATCCGAACCCGAAATGAC
1 CGAAATGACCCGAACTCGAAATGAC
4784142 CTGAATAATT
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
31 2 0.02
32 94 0.95
33 3 0.03
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (32 bp):
CGAAATGACCCGAACTCGAAATGACACGAATC
Found at i:4784043 original size:48 final size:46
Alignment explanation
Indices: 4783969--4784142 Score: 147
Period size: 48 Copynumber: 3.6 Consensus size: 46
4783959 CAACAACCCA
* *
4783969 AATCCGAACTGATTCGAACTCGAAATGATCCGAACTCGAAATGACACG
1 AATCCGAA-TGACTCGAACCCGAAATGA-CCGAACTCGAAATGACACG
* * *
4784017 AATCCAGAATGACTCGAACCCTAAATGACTCGAA-TCCGAAATGTCCCG
1 AATCC-GAATGACTCGAACCCGAAATGAC-CGAACT-CGAAATGACACG
* * * *
4784065 AATCCGAAATGACCCGAATCCGAAATGACCCGAACTTGAAATGATC-TG
1 AATCCG-AATGACTCGAACCCGAAATGA-CCGAACTCGAAATGA-CACG
*
4784113 AATTCGAAATGA-TCCGAACCCGAAATGACC
1 AATCCG-AATGACT-CGAACCCGAAATGACC
4784143 TGAATAATTA
Statistics
Matches: 104, Mismatches: 14, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
47 5 0.05
48 93 0.89
49 6 0.06
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.18
Consensus pattern (46 bp):
AATCCGAATGACTCGAACCCGAAATGACCGAACTCGAAATGACACG
Found at i:4785252 original size:16 final size:16
Alignment explanation
Indices: 4785233--4785291 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
4785223 AAAATAACGA
*
4785233 AAATTCAAAATGATCC
1 AAATTCAAAATAATCC
*
4785249 AAATCCAAAATAATCC
1 AAATTCAAAATAATCC
* *
4785265 GAAACT-AAAATAATTC
1 -AAATTCAAAATAATCC
*
4785281 AAATTTAAAAT
1 AAATTCAAAAT
4785292 TAATTAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 4 0.11
16 28 0.80
17 3 0.09
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.25
Consensus pattern (16 bp):
AAATTCAAAATAATCC
Found at i:4785275 original size:32 final size:32
Alignment explanation
Indices: 4785200--4785284 Score: 77
Period size: 32 Copynumber: 2.6 Consensus size: 32
4785190 CCCGTTGACC
*
4785200 AAAACTTAAAATGATCCGAA-CCTAAAATAACG
1 AAAAC-TAAAATGATCCAAATCCTAAAATAACG
*
4785232 AAAATTCAAAATGATCCAAATCC-AAAATAATCCG
1 AAAACT-AAAATGATCCAAATCCTAAAATAA--CG
* *
4785266 -AAACTAAAATAATTCAAAT
1 AAAACTAAAATGATCCAAAT
4785285 TTAAAATTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
31 1 0.02
32 35 0.80
33 6 0.14
34 2 0.05
ACGTcount: A:0.55, C:0.18, G:0.06, T:0.21
Consensus pattern (32 bp):
AAAACTAAAATGATCCAAATCCTAAAATAACG
Found at i:4791198 original size:2 final size:2
Alignment explanation
Indices: 4791191--4791228 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4791181 GTGGGCTTTG
4791191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4791229 TTTTGGTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4791591 original size:22 final size:22
Alignment explanation
Indices: 4791566--4791612 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
4791556 AAAAAATAAG
4791566 AAATATTAAGG-AAAAGAAAAGA
1 AAATATT-AGGTAAAAGAAAAGA
* *
4791588 AAATGTTAGGTAAAATAAAAGA
1 AAATATTAGGTAAAAGAAAAGA
4791610 AAA
1 AAA
4791613 GATGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (22 bp):
AAATATTAGGTAAAAGAAAAGA
Found at i:4792679 original size:16 final size:16
Alignment explanation
Indices: 4792658--4792691 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
4792648 AAAATCAATA
4792658 ATCTGAATCTGAAATG
1 ATCTGAATCTGAAATG
*
4792674 ATCTGAATGTGAAATG
1 ATCTGAATCTGAAATG
4792690 AT
1 AT
4792692 ACAAATTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (16 bp):
ATCTGAATCTGAAATG
Found at i:4792754 original size:32 final size:32
Alignment explanation
Indices: 4792669--4792762 Score: 93
Period size: 32 Copynumber: 2.9 Consensus size: 32
4792659 TCTGAATCTG
* * * *
4792669 AAATGATCTGAATGTGAAATGATACAAATTCG
1 AAATGATCTGAATCTGAAATGATTCGAATTCA
* *
4792701 AAATGTTTTGAATCT-ATAATGATTCGAATTCA
1 AAATGATCTGAATCTGA-AATGATTCGAATTCA
*
4792733 AAATGATCTGAA-CTTGAAATGATTTGAATT
1 AAATGATCTGAATC-TGAAATGATTCGAATT
4792763 AAATTTGATT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
31 2 0.04
32 47 0.94
33 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (32 bp):
AAATGATCTGAATCTGAAATGATTCGAATTCA
Found at i:4793441 original size:2 final size:2
Alignment explanation
Indices: 4793434--4793459 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4793424 AGATTTAATG
4793434 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4793460 TAAATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4793626 original size:26 final size:26
Alignment explanation
Indices: 4793593--4793665 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
4793583 AATCCTAGAT
4793593 AAAA-TTAAATTTTATCAATCTCAAA
1 AAAAGTTAAATTTTATCAATCTCAAA
*
4793618 AAAAGTTAAATTTTATTAATCTCAAA
1 AAAAGTTAAATTTTATCAATCTCAAA
* *
4793644 TAAAGTTAAACTTTATCAATCT
1 AAAAGTTAAATTTTATCAATCT
4793666 TATCTCAATG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
25 4 0.09
26 39 0.91
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (26 bp):
AAAAGTTAAATTTTATCAATCTCAAA
Found at i:4794387 original size:178 final size:178
Alignment explanation
Indices: 4794088--4794447 Score: 603
Period size: 178 Copynumber: 2.0 Consensus size: 178
4794078 AACCTCTAAA
*
4794088 CATTTAAACCCAAACTATTAACAAGAACATGTAACTATATACTTTTTTTGACCATTTTTGTCAAT
1 CATTTAAACCCAAACTATTAACAAGAACATGTAACTATATACTTTTTTTGACCACTTTTGTCAAT
* * * *
4794153 GACATGTATTCTGTTTGAGTGGTAGACAAAGCAACTATAGATTGAAGTGTTGCTTTCCAACTAAT
66 AACATGTATTCTATTTCAATGGTAGACAAAGCAACTATAGATTGAAGTGTTGCTTTCCAACTAAT
* *
4794218 GACACATCCATTCAAAGTAAAGATATAAAATGTTATGGATCCCCTTTT
131 GACACATCCATTCAAAATAAAGATATAAAATGCTATGGATCCCCTTTT
* * *
4794266 CATTTAAACCTAAACTATTAACAATATCATGTAACTATATACTTTTTTTGACCACTTTTGTCAAT
1 CATTTAAACCCAAACTATTAACAAGAACATGTAACTATATACTTTTTTTGACCACTTTTGTCAAT
* * *
4794331 AACATGTATTCTATTTCAATGGTGGACCAAGCAACTGTAGATTGAAGTGTTGCTTTCCAACTAAT
66 AACATGTATTCTATTTCAATGGTAGACAAAGCAACTATAGATTGAAGTGTTGCTTTCCAACTAAT
4794396 GACACATCCATTCAAAATAAAGATATAAAATGCTATGGATCCCCTTTT
131 GACACATCCATTCAAAATAAAGATATAAAATGCTATGGATCCCCTTTT
4794444 CATT
1 CATT
4794448 AAGATTTCCA
Statistics
Matches: 169, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
178 169 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (178 bp):
CATTTAAACCCAAACTATTAACAAGAACATGTAACTATATACTTTTTTTGACCACTTTTGTCAAT
AACATGTATTCTATTTCAATGGTAGACAAAGCAACTATAGATTGAAGTGTTGCTTTCCAACTAAT
GACACATCCATTCAAAATAAAGATATAAAATGCTATGGATCCCCTTTT
Found at i:4799333 original size:2 final size:2
Alignment explanation
Indices: 4799326--4799352 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4799316 ATTTAAATAC
4799326 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4799353 ATAACTGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4802005 original size:22 final size:23
Alignment explanation
Indices: 4801948--4807729 Score: 1551
Period size: 22 Copynumber: 258.7 Consensus size: 23
4801938 TTTCGGTTTA
4801948 CGGGTTTACGGGTTTCGAGGTATT
1 CGGGTTT-CGGGTTTCGAGGTATT
*
4801972 CGGGTTGC-GGTTTCG-GGTACTT
1 CGGGTTTCGGGTTTCGAGGTA-TT
4801994 -GGGTTTCGGGTTCTCCG-GG-ATAT
1 CGGGTTTCGGGTT-T-CGAGGTAT-T
4802017 CGGGGTTT-GGGATTCGGGTCGAGAGTATT
1 C-GGGTTTCGGG-TT----TCGAG-GTATT
*
4802046 CGCGGTTTCCGAGG-TTCG-GAGTCTT
1 CG-GGTTT-CG-GGTTTCGAG-GTATT
* *
4802071 CGGGTTAATCAGGTTTC--GCT-TT
1 CGGGTT--TCGGGTTTCGAGGTATT
*
4802093 CGAGGATTTCAGGG-TTCG-GGTTTT
1 CG-GG-TTTC-GGGTTTCGAGGTATT
4802117 C-GG-TTC-GGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4802135 CGGGGTTTC-GGTTTCG-GG--TT
1 C-GGGTTTCGGGTTTCGAGGTATT
4802155 CGGGTCTTC-GGTTTACGAGGT-TT
1 CGGGT-TTCGGGTTT-CGAGGTATT
*
4802178 CGAGGTTTTCGGGGTT--AGGTGA-T
1 CG-GG-TTTCGGGTTTCGAGGT-ATT
*
4802201 CGGGTTTCGGG-GTCG-GGTATT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4802222 CGGGTTGCGGGTTTCCGAGGT-TT
1 CGGGTTTCGGGTTT-CGAGGTATT
4802245 CGGGGTTTTCGGGTTTCG-GGT-TT
1 C-GGG-TTTCGGGTTTCGAGGTATT
* *
4802268 CGAAGG-GTCGGGTATTCG-GGTTATC
1 CG--GGTTTCGGGT-TTCGAGG-TATT
4802293 CGAGGTTTCGGGTTTCG-GGT-TT
1 CG-GGTTTCGGGTTTCGAGGTATT
*
4802315 CGCGGGTTATC-GGTTTCGGCCGGGT-TT
1 --CGGGTT-TCGGGTTTC-G--AGGTATT
4802342 CGCGGGTTTC-GGTTATC--GGT-TT
1 --CGGGTTTCGGGTT-TCGAGGTATT
* *
4802364 CAGGTTTCCGGGGTTCG-GGT-TT
1 CGGGTTT-CGGGTTTCGAGGTATT
4802386 CGGGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4802407 CGGAG-GTCGGGTTTCG-GGT-TT
1 CGG-GTTTCGGGTTTCGAGGTATT
*
4802428 CGGGTTTCGGG-TTCGAGGTTTCT
1 CGGGTTTCGGGTTTCGAGGTAT-T
*
4802451 CGGGTTTCGGGTTTACGAGGTTTT
1 CGGGTTTCGGGTTT-CGAGGTATT
*
4802475 CGGGATTTC-GGTTTCAGCGAGT-TT
1 CGGG-TTTCGGGTTTC-GAG-GTATT
*
4802499 CGGGTTTCGGGTTTCG-GGT-TA
1 CGGGTTTCGGGTTTCGAGGTATT
4802520 CGGGTTGTCGGG-TTC--GGT-TT
1 CGGGTT-TCGGGTTTCGAGGTATT
*
4802540 CGGGTTTTCTGCGGGTTATCGGGGT-TT
1 CGGG--TT-T-CGGGTT-TCGAGGTATT
*
4802567 CGGGTTTCGGG-TGCG-GGT-TAT
1 CGGGTTTCGGGTTTCGAGGTAT-T
4802588 CGGG-TTCGGGTTTTC--GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
*
4802608 CGGGGTTTCGGGTTTCCG-GGTTTT
1 C-GGGTTTCGGGTTT-CGAGGTATT
* *
4802632 CGGGTATGCGCGGTTT-GCGG--TT
1 CGGGT-TTCG-GGTTTCGAGGTATT
4802654 CGGGGTTTC-GGTTTCCG-GGT-TT
1 C-GGGTTTCGGGTTT-CGAGGTATT
4802676 CGGGTTTCGGGTTTC-ACGGT-TT
1 CGGGTTTCGGGTTTCGA-GGTATT
4802698 C-GGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4802718 CGGGTTTCGGGTTTC-AGGGTTCTT
1 CGGGTTTCGGGTTTCGA-GG-TATT
* *
4802742 CGGGTGTCGGGTTTCAGGGGT-TT
1 CGGGTTTCGGGTTTC-GAGGTATT
*
4802765 CGGGTTTCGGGTTGCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
* * *
4802786 CGAAGTTTCGGGTATCCAGGGT-TT
1 CG-GGTTTCGGGTTTCGA-GGTATT
4802810 CGGGATTTCGGGTTTCG-GG---T
1 CGGG-TTTCGGGTTTCGAGGTATT
4802830 CGGGTTATATTCCGGG-TTCG-GG-A-T
1 CGGG---T-TT-CGGGTTTCGAGGTATT
4802854 CGGGTTTCGGGTTTCG-GGTATT
1 CGGGTTTCGGGTTTCGAGGTATT
4802876 CCGGG-TTCGGGTTTC-AGGT-TT
1 -CGGGTTTCGGGTTTCGAGGTATT
4802897 CGGGTTTCGGAG-TTCGA-GTATT
1 CGGGTTTCGG-GTTTCGAGGTATT
* * *
4802919 CCGGTTTAGGG-TTCG-GGT-GT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4802939 CGGTTTTCCGGGGTTCG-GCGT-TT
1 CGGGTTT-CGGGTTTCGAG-GTATT
4802962 CGGGTTTCGGAGTTTCGGCAGGGT-TT
1 CGGGTTTCGG-GTTTC-G-A-GGTATT
* * *
4802988 ACGGGTTCCGGGTTGCGTGGTA-T
1 -CGGGTTTCGGGTTTCGAGGTATT
*
4803011 C-GGTTTCCGGAGTTTCG-GGTTTT
1 CGGGTTT-CGG-GTTTCGAGGTATT
4803034 CGGGTTTCGGGTTTC-AGGGT-TT
1 CGGGTTTCGGGTTTCGA-GGTATT
* *
4803056 CGGGTTTCGTGTGTC--GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4803076 CGGGTTTCGGGCGTTC--GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
*
4803097 CGGGTTGCGGGTTTCG-GG--TT
1 CGGGTTTCGGGTTTCGAGGTATT
4803117 C-GGTTTCGGG-TTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4803136 CAGGAGTTTCGGGTTTCG-GGATTTT
1 C-GG-GTTTCGGGTTTCGAGG-TATT
*
4803161 CGGGTTTTC-GGTTTCG-GGTTTT
1 CGGG-TTTCGGGTTTCGAGGTATT
4803183 CGGGTTTCGGGTTTTCG-GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
*
4803205 CGGGTAATTCGGGTTATGCG-GGATCTTT
1 CGGGT--TTCGGGTT-T-CGAGG-T-ATT
*
4803233 CGTGG-TTCGGAGTGTCGGTTCGA-GTTTT
1 CG-GGTTTC-G-G-GT---TTCGAGGTATT
4803261 C-GGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4803281 CCAGGGTTTCGGG-TTCGAGGT-TGC
1 -C-GGGTTTCGGGTTTCGAGGTAT-T
4803305 CGGGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4803326 CGGGTTTCGGGTTATC--GGT-TT
1 CGGGTTTCGGGTT-TCGAGGTATT
* *
4803347 CGGGTATATCGGGTATTACG-GGGATG
1 CGGGT-T-TCGGGT-TT-CGAGGTATT
*
4803373 CGGGTTTCGGGTTTCG-GGTTTCT
1 CGGGTTTCGGGTTTCGAGGTAT-T
*
4803396 CGGG-TTCGGGTTTCG-GAGT-TG
1 CGGGTTTCGGGTTTCGAG-GTATT
* *
4803417 CGGGTGTCGGAGGTTCG-GGCTATT
1 CGGGTTTCGG-GTTTCGAGG-TATT
4803441 CGGGTTCTCGGGTTTCG-GGT-TT
1 CGGGTT-TCGGGTTTCGAGGTATT
*
4803463 CGGTATTTCGGGTTTCG-GGT-TT
1 CGG-GTTTCGGGTTTCGAGGTATT
4803485 CGGG-TTCGGG-TTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4803504 CGGGGTATCGGGGTTTCG-GGT-TT
1 C-GGGTTTC-GGGTTTCGAGGTATT
*
4803527 ACGGGATGATC-GGTTTCG-GGT-TAT
1 -CGGG-T-TTCGGGTTTCGAGGTAT-T
*
4803551 CGGGTTTC-GG-TACG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4803570 CGGGTTTCGCGGAAATTTCG-GGT-TG
1 CGGGTTTCG-GG---TTTCGAGGTATT
4803595 CAGGGTTTC-GGTTTCG-GGT-TT
1 C-GGGTTTCGGGTTTCGAGGTATT
4803616 C-GGTATTCGGGTTTCG-GGT-TT
1 CGGGT-TTCGGGTTTCGAGGTATT
4803637 CGGGTTTCGGAG-TTCG-GGT-TT
1 CGGGTTTCGG-GTTTCGAGGTATT
*
4803658 CGGGTTTCGGGTTTCG-GGT-GT
1 CGGGTTTCGGGTTTCGAGGTATT
4803679 CGGGTTTCGGGTTTCTG-GGTATT
1 CGGGTTTCGGGTTTC-GAGGTATT
* *
4803702 CGGG-TT-AGGTTTCG-GGTTTTT
1 CGGGTTTCGGGTTTCGAGG-TATT
*
4803723 CCCGGGGTTTCGGTATTTCG-GGT-TT
1 --C-GGGTTTCGG-GTTTCGAGGTATT
4803748 CCCGGGTTATCGGGTTTCG-GGT-TT
1 --CGGGTT-TCGGGTTTCGAGGTATT
*
4803772 CAGGGATATTCGGG-TTC-TGGT-TT
1 C-GGG-T-TTCGGGTTTCGAGGTATT
4803795 CGGGTTTCGGGGGTTTC-AGGGT-TT
1 CGGGTTTC--GGGTTTCGA-GGTATT
4803819 CGGGGTATTCGGGTTCTCGA-GT-TT
1 C-GGGT-TTCGGGTT-TCGAGGTATT
*
4803843 CGGGTTTC-GGTTTCG-GG-GTT
1 CGGGTTTCGGGTTTCGAGGTATT
4803863 C-GGTTTGCGGGTTTCG-GGT-TT
1 CGGGTTT-CGGGTTTCGAGGTATT
4803884 CTGGGATTTCGGGTTCTCG-GGT-TT
1 C-GGG-TTTCGGGTT-TCGAGGTATT
* *
4803908 CGTGTTTGCCGGTTTC--GG--TT
1 CGGGTTT-CGGGTTTCGAGGTATT
4803928 CGGGTTTACGGGTTATACG-GGT-TT
1 CGGGTTT-CGGGTT-T-CGAGGTATT
4803952 C-GGTTTCGGGATTTCG-GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
*
4803973 CAGGGTTATCAGGGTAAATCTC-AGGGATTAT
1 C-GGGTT-TC-GGGT---T-TCGAGGTA-T-T
4804004 CGGGTTTC-GGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4804024 CGGGTTTCACGGTTGCG-GGT-TT
1 CGGGTTTC-GGGTTTCGAGGTATT
4804046 C-GGTTTCGGGTTTCTCTCG-GGT-TT
1 CGGGTTTCGGG--T-T-TCGAGGTATT
*
4804070 CGGGTTTCGGGTTTCG-GGT-GT
1 CGGGTTTCGGGTTTCGAGGTATT
4804091 CGGGTTCTCGGGTTTCG-GGT-TT
1 CGGGTT-TCGGGTTTCGAGGTATT
*
4804113 CGGGATTTCGGGTATTCG-GGT-TA
1 CGGG-TTTCGGGT-TTCGAGGTATT
*
4804136 CGGGTTTTCGGGATTTCG-GGT-TA
1 CGGG-TTTCGGG-TTTCGAGGTATT
4804159 CGGGTTTCGGGTTTCCG-GGT-TT
1 CGGGTTTCGGGTTT-CGAGGTATT
* * *
4804181 CGGGATTCGGGTTTCGAGGTGTG
1 CGGGTTTCGGGTTTCGAGGTATT
4804204 CGGGGTTTCGGGTTTCG-GGT-TT
1 C-GGGTTTCGGGTTTCGAGGTATT
* * *
4804226 CGAG-CT-GCGTTTCGAGGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4804246 CGCGGTTTCGGGTTTTCG-GG--TT
1 CG-GGTTTCGGG-TTTCGAGGTATT
*
4804268 CAGGGTTTCGGGCTATCG-GGTAGTT
1 C-GGGTTTCGGG-TTTCGAGGTA-TT
4804293 CGGAG-TT-GGGTTTC--GG--TT
1 CGG-GTTTCGGGTTTCGAGGTATT
4804311 CGGGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4804332 ACAGGGTTTCGAGGTTTTC-CGG--TT
1 -C-GGGTTTCG-GG-TTTCGAGGTATT
**
4804356 C-GG-TTCGGGGTGGCG-GGT-TT
1 CGGGTTTC-GGGTTTCGAGGTATT
*
4804376 CGGGTTCGCGGGTTTC--GGT-TT
1 CGGGTT-TCGGGTTTCGAGGTATT
* * *
4804397 CCGGTTTAGGGTATTCG-GGT-TG
1 CGGGTTTCGGGT-TTCGAGGTATT
*
4804419 CGGGTTTCGGG-TTCG-TGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4804439 CGGGTTGCGGGTTTCGGGGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4804461 CGGGTTTCGGGTTT-G-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4804481 CGGGTTTCGGGTTCGGTCG-GGTCTT
1 CGGGTTTCGGGTT---TCGAGGTATT
*
4804506 CGGGTTTC-GG-TTCG-GGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
4804526 CTGGGTTTCGGGTATTCG-GGT-TT
1 C-GGGTTTCGGGT-TTCGAGGTATT
* *
4804549 CGGGGTTCGGGTTTCG-GGT-TA
1 CGGGTTTCGGGTTTCGAGGTATT
*
4804570 CGGGTTTCGGGGTATTCG-GGTTTT
1 CGGGTTTC-GGGT-TTCGAGGTATT
4804594 CGGGTATTCGGGTTTCCG-GGT-TT
1 CGGGT-TTCGGGTTT-CGAGGTATT
* * *
4804617 CGGATTTCCGGGTTGCGGAGTTA-T
1 CGGGTTT-CGGGTTTC-GAGGTATT
*
4804641 C-GG-TTCGGGTTTTCG-GTTTTATT
1 CGGGTTTCGGG-TTTCGAG--GTATT
4804664 CGGGTTTCGGGTTATCG-GG-ATGT
1 CGGGTTTCGGGTT-TCGAGGTAT-T
*
4804687 CGGGTTTCGGGTATC--GGTATTT
1 CGGGTTTCGGGTTTCGAGGTA-TT
*
4804709 CGGGTTTTCGGG-TTCGCGGT-TCT
1 CGGG-TTTCGGGTTTCGAGGTAT-T
4804732 CGGGTTTCGAGG-TTCG-GGT-TT
1 CGGGTTTCG-GGTTTCGAGGTATT
*
4804753 CGGGTTTCGGGATGTCG-GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
4804775 CGGGTTTCGGGTTTCG-GGTA-T
1 CGGGTTTCGGGTTTCGAGGTATT
*
4804796 CGGAGTTTACGGTTTATCG-GGT-TT
1 CGG-GTTT-CGGGTT-TCGAGGTATT
*
4804820 ACGGG-TTCGGGTTTCGTTCGGGT-TT
1 -CGGGTTTCGGGTTTCG---AGGTATT
* *
4804845 CGGG-TTC-GGTTTCGGGGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
4804866 C-GGTTTC-GGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4804885 CGGGTTTC-GG-TTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4804904 CGGG-TTCGGGTTTCG-GTTCAGGTT
1 CGGGTTTCGGGTTTCGAGGT-A--TT
4804928 CGGGTTTCGGGTTT--ACGGT-TT
1 CGGGTTTCGGGTTTCGA-GGTATT
4804949 CGGGGTGTTCGGGTTTTCG-GGT-TT
1 C-GGGT-TTCGGG-TTTCGAGGTATT
* * *
4804973 CGGGATTCCGGGATTTCGGGGT-TG
1 CGGG-TTTCGGG-TTTCGAGGTATT
4804997 C-GGTTTCGGGGTTTCG-GGT-TT
1 CGGGTTTC-GGGTTTCGAGGTATT
4805018 CGGGTTTCAGGG-TTCGAGGT-TT
1 CGGGTTTC-GGGTTTCGAGGTATT
4805040 C-GGTTTC-GGTTTCG-GGTGATT
1 CGGGTTTCGGGTTTCGAGGT-ATT
4805061 CGCGGTTTCCGGGTTTC-AGGGT-TT
1 CG-GGTTT-CGGGTTTCGA-GGTATT
4805085 CGGGTTTCGGGTTTC--GG-AGTT
1 CGGGTTTCGGGTTTCGAGGTA-TT
4805106 CGGGGTATTCGGGTTTTCG-GAGT-TT
1 C-GGGT-TTCGGG-TTTCGAG-GTATT
*
4805131 CGGGTTTCGGAGTATTCG-GGATCTT
1 CGGGTTTCGG-GT-TTCGAGG-TATT
*
4805156 GCGGG-TTC-GGTTTCGGGGGT-TT
1 -CGGGTTTCGGGTTTC-GAGGTATT
4805178 CGGGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4805199 CGGGTTTC--GTTTCG-GG-GTT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4805218 CGGGTATTCGGGTTCGCCGGGGGGT-TT
1 CGGGT-TTCGGGTT--TC--GAGGTATT
4805245 GCGGGTTT--GGTTTC--GGT-TT
1 -CGGGTTTCGGGTTTCGAGGTATT
4805264 C--GTTTGCGGGTTTC--GGT-TT
1 CGGGTTT-CGGGTTTCGAGGTATT
4805283 C-GGTTTC-GGTTTC-AGG-AGTTT
1 CGGGTTTCGGGTTTCGAGGTA--TT
*
4805304 CGGGTTTCGGG-TTCG-GGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
4805325 CAGGGCATTTCGGGTTTCG-GGT-TT
1 C-GGG--TTTCGGGTTTCGAGGTATT
*
4805349 CGGAGTTTC-GGTTTC-AGG-GTT
1 CGG-GTTTCGGGTTTCGAGGTATT
*
4805370 CAGGAGTTTACAGGGTTTCG-GGT-TG
1 C-GG-GTTT-C-GGGTTTCGAGGTATT
** *
4805395 CAGGGTTGTCGGGGTGGCG-GGTCTT
1 C-GGGTT-TC-GGGTTTCGAGGTATT
4805420 CGGGTTTCGGGTTTTCG-GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
4805442 CGGGGTATTCTACTCGGGTTATCG-GGT-TT
1 C-GGG---T-T--TCGGGTT-TCGAGGTATT
4805471 C-GGTTTCAGGGTATTCG-GGT-TT
1 CGGGTTTC-GGGT-TTCGAGGTATT
*
4805493 CGGG-TTCGGGTTTCG-GGT-GT
1 CGGGTTTCGGGTTTCGAGGTATT
4805513 CGGGTATTCAGGGTTTCG-GGT-TT
1 CGGGT-TTC-GGGTTTCGAGGTATT
4805536 CGGGTTTCCTCGGGTTTC--GGT-TT
1 CGGG-TT--TCGGGTTTCGAGGTATT
4805559 CGGGTATTCAGGGTTTC--GGT-TT
1 CGGGT-TTC-GGGTTTCGAGGTATT
*
4805581 CGGAGTTTCGGGTGTCG-GGT-TT
1 CGG-GTTTCGGGTTTCGAGGTATT
* *
4805603 CGGGTTGCGGG-TT-GCGGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4805623 CGGGTTTCGGG-TT-GGGGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
4805644 CGGGTTTCGGGGTTTC--GGT-TT
1 CGGGTTTC-GGGTTTCGAGGTATT
* *
4805665 CCGGGATTTCGGG-TTCG-GTTA-G
1 -CGGG-TTTCGGGTTTCGAGGTATT
*
4805687 CGGGTTTCGGGTTTCCGGGGT-TT
1 CGGGTTTCGGGTTT-CGAGGTATT
*
4805710 CACGG-TTCGAGGATTTCG-GGTATAT
1 C-GGGTTTCG-GG-TTTCGAGGTAT-T
*
4805735 CGGGTTTC-GGTTTACG-GGT-TA
1 CGGGTTTCGGGTTT-CGAGGTATT
4805756 CGGGTTCTTCGGGTTTCG-GGT-TT
1 CGGG-T-TTCGGGTTTCGAGGTATT
* *
4805779 CCGGGTTTCGGGTGTCG-GGTCTTTT
1 -CGGGTTTCGGGTTTCGAGG--TATT
4805804 CGGGTATTCGGGTTT-G-GGT-TT
1 CGGGT-TTCGGGTTTCGAGGTATT
*
4805825 CAGGGTTTCGGGTGTCG-GGT-TT
1 C-GGGTTTCGGGTTTCGAGGTATT
*
4805847 -GGAGATTCGGGTTTCG-GGT-TT
1 CGG-GTTTCGGGTTTCGAGGTATT
4805868 -GCGGTTTACGGGTATTCG-GGT-TT
1 CG-GGTTT-CGGGT-TTCGAGGTATT
4805891 CGGGTTTCCGGGTTTCG-GGT-TT
1 CGGGTTT-CGGGTTTCGAGGTATT
*
4805913 CCGGGTTCCGGGTCATTCG-GAGT-TT
1 -CGGGTTTCGGGT--TTCGAG-GTATT
4805938 CGGAAGTTTCGGG--TCG-GGT-TT
1 CGG--GTTTCGGGTTTCGAGGTATT
4805959 CGGAGTTTTCGGAGTTTCG-GGT-TT
1 CGG-G-TTTCGG-GTTTCGAGGTATT
4805983 CGGGTTTCGGCGTTTCG-GGT-TT
1 CGGGTTTCGG-GTTTCGAGGTATT
* * * *
4806005 AGGGTGTCGGTTTTATCG-TGT-TT
1 CGGGTTTCGG-GTT-TCGAGGTATT
**
4806028 CGGAGTTATCAGGCGTTTCTTCGGT-TT
1 CGG-GTT-TC-GG-GTTTC-GAGGTATT
*
4806055 CGGGTAATCTCGGGTTTCCG-GCG-GTT
1 CGGGT--T-TCGGGTTT-CGAG-GTATT
*
4806081 CGGGTTTCGGGTTTCG-GGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4806103 CGCGGGTTTC-GGTTTC-AGG-GTT
1 --CGGGTTTCGGGTTTCGAGGTATT
*
4806125 CGGG-GTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4806145 CGGGTTTCGGG-GT-GCGGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4806165 CGGGTTTC-GGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4806185 CGGAGTTTC-GGTTTCG-GGT-TT
1 CGG-GTTTCGGGTTTCGAGGTATT
4806206 CGGGTATTCGAGGTTTCG-GGTAACTT
1 CGGGT-TTCG-GGTTTCGAGGT-A-TT
* *
4806232 ACGGGTTCACGGGTTTCCAGGT-TT
1 -CGGGTT-TCGGGTTTCGAGGTATT
* *
4806256 CAAGGGTTTCGGGTTTCGGGGGTTTT
1 C--GGGTTTCGGGTTTC-GAGGTATT
*
4806282 CGAGGTATTTCGGG-TTCG-GG-GTT
1 CG-GG--TTTCGGGTTTCGAGGTATT
4806305 CGGGTTTCGGGTTTC--GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4806325 CGGGTTATC---TTTC-AGG-GTT
1 CGGGTT-TCGGGTTTCGAGGTATT
**
4806344 CGGGATTTATCGGGTTTCGAGGT-GG
1 CGGG--TT-TCGGGTTTCGAGGTATT
*
4806369 C-GG-TTCGGGTTTCG-GAGTTTT
1 CGGGTTTCGGGTTTCGAG-GTATT
4806390 CGGCGTCTTCGGGTTTCG-GGT-TT
1 CGG-GT-TTCGGGTTTCGAGGTATT
4806413 CGGCGTTTCGGGGTTTCG-GGT-TT
1 CGG-GTTTC-GGGTTTCGAGGTATT
*
4806436 ACGGGTTTCGGGTTTCGGAGTTCAGGTTT
1 -CGGGTTTCGGGTTTC-GAGGT-A---TT
*
4806465 C-GGTTTCGGGTTT-GCGG--TT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4806484 CGGGTTTCGGGTTTCGGGGT-TC
1 CGGGTTTCGGGTTTCGAGGTATT
4806506 CGGGTTTACGGGTTTCG-GGTATTT
1 CGGGTTT-CGGGTTTCGAGGTA-TT
4806530 C-GGTTTACGGGTTTTCG-GGT-TT
1 CGGGTTT-CGGG-TTTCGAGGTATT
4806552 CGGGTTTCGGGTTTCG-GG-ATTT
1 CGGGTTTCGGGTTTCGAGGTA-TT
*
4806574 CGGGATTGCGGGTTTCG-GGT-TT
1 CGGG-TTTCGGGTTTCGAGGTATT
4806596 CAGGGTTTCGGGTTTC-AGGGT-TT
1 C-GGGTTTCGGGTTTCGA-GGTATT
*
4806619 CGAGGTATATC-GCTTTCG-GG--TT
1 CG-GGT-T-TCGGGTTTCGAGGTATT
*
4806641 CGGGTATATCCGGGTTTCGGGGT-TT
1 CGGGT-T-T-CGGGTTTCGAGGTATT
* *
4806666 CGTGTTTCGGGTTGGCG-GGT-TT
1 CGGGTTTCGGGTT-TCGAGGTATT
* * * *
4806688 AGGGTGTCGGGGTTCG-GTTA-T
1 CGGGTTTCGGGTTTCGAGGTATT
4806709 C-GGTTTCGGGTTTCCG-GGT-TT
1 CGGGTTTCGGGTTT-CGAGGTATT
4806730 CGGGTTTCCAGGAGTTTC-AGGGTA-T
1 CGGGTTT-C-GG-GTTTCGA-GGTATT
*
4806755 CGGGTTTCGGGTTTCG-GGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
4806777 CGGGTTTCGGGTTTTCG-GGT-TT
1 CGGGTTTCGGG-TTTCGAGGTATT
4806799 CGGGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4806820 CGGGTTTGCGGG-TTC--GGT-TT
1 CGGGTTT-CGGGTTTCGAGGTATT
4806840 CGGGTTTCGGGTTT-G-GG-ATTT
1 CGGGTTTCGGGTTTCGAGGTA-TT
4806861 C-GGTTTCGGGTTTCG-GG--TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4806880 CGAGGTTTCGGGTTTCG-GAGTTTT
1 CG-GGTTTCGGGTTTCGAG-GTATT
*
4806904 CGGGTTCCGGGTATTCG-GGT-TT
1 CGGGTTTCGGGT-TTCGAGGTATT
*
4806926 CGGGTTTCGGGTTTCG-GGATTTT
1 CGGGTTTCGGGTTTCGAGG-TATT
*
4806949 CGGGTGTC-GGTTTC--GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4806968 CGGGTTTCGCGGGTTTCG-GG--TT
1 CGGGTTT--CGGGTTTCGAGGTATT
*
4806990 CGGGTTATCGGG-TTCG-GGT-TG
1 CGGGTT-TCGGGTTTCGAGGTATT
4807011 CGGGAATTTCCGGGTTTCG-GG---T
1 CGGG--TTT-CGGGTTTCGAGGTATT
4807033 CGGGTTTCGGGTTATCG-GGT-TT
1 CGGGTTTCGGGTT-TCGAGGTATT
*
4807055 CGGGTTTAGGGTTTC--GG--TT
1 CGGGTTTCGGGTTTCGAGGTATT
* *
4807074 CGGGGTTCGGGTTTCGGGGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4807096 C-GGTTT--GGTTTCG-GGTATT
1 CGGGTTTCGGGTTTCGAGGTATT
4807115 CGGG-TTCGGGTTTTACG-GGT-TT
1 CGGGTTTCGGG-TTT-CGAGGTATT
* *
4807137 CGGG-GTCGGGTGTCG-GCGT-TT
1 CGGGTTTCGGGTTTCGAG-GTATT
*
4807158 CGGGTTTC-GGTTTCGGGTTCGGTATT
1 CGGGTTTCGGGTTTC--G--AGGTATT
* *
4807184 CGGGTGTCGGGTTTCG-GGTTGTT
1 CGGGTTTCGGGTTTCGAGG-TATT
*
4807207 CGGGTTTC-GGTTTCG-GGTTTT
1 CGGGTTTCGGGTTTCGAGGTATT
** *
4807228 CGGGAGTCGGGTATCG-GGT-TAT
1 CGGGTTTCGGGTTTCGAGGTAT-T
* *
4807250 CGGGTTACGGGTTTC-AGG-GTT
1 CGGGTTTCGGGTTTCGAGGTATT
* * *
4807271 CGGGTTTAGGGTGTCGGGTTGCCGGTATT
1 CGGGTTTCGGGT-T----TCG-AGGTATT
*
4807300 CCGGGTTTCGGG-TTC-AGGTTTT
1 -CGGGTTTCGGGTTTCGAGGTATT
4807322 CCGGGTTTCGGG-TTCG-GGT-TT
1 -CGGGTTTCGGGTTTCGAGGTATT
4807343 CGGGTTTCGGAG-TTCG-GAGT-TT
1 CGGGTTTCGG-GTTTCGAG-GTATT
*
4807365 CAAGGTTATCGGG-TTCG-GG--TT
1 C-GGGTT-TCGGGTTTCGAGGTATT
4807386 CGGGTTTTCGGGTTTCG-GG-ATTT
1 CGGG-TTTCGGGTTTCGAGGTA-TT
4807409 C-GGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4807429 CGGGTTTCGGG-TTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4807449 CGGGTTTCGAGGTTGCG-GGT-TT
1 CGGGTTTCG-GGTTTCGAGGTATT
4807471 CGGGTTTCGGGTTTTCG-GGT-TAT
1 CGGGTTTCGGG-TTTCGAGGTAT-T
4807494 CGGGGTTTTCGGGGTTTCGAGAGT-TT
1 C-GGG-TTTC-GGGTTTCGAG-GTATT
* *
4807520 CGGGTTTC-GG-TTGGGGGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4807540 C-GGTTTCGGGTTATCG-GGT-TT
1 CGGGTTTCGGGTT-TCGAGGTATT
4807561 CCGGGTTTTC--G-TTC--GG-AGTT
1 -CGGG-TTTCGGGTTTCGAGGTA-TT
4807581 CGGGATTTCCGAGGTTTCGAGGT-TT
1 CGGG-TTT-CG-GGTTTCGAGGTATT
4807606 CGGGGTTTCGGGTTTCG-GGT-TT
1 C-GGGTTTCGGGTTTCGAGGTATT
** *
4807628 CGGGTGGC-GGTTGCG-GG--TT
1 CGGGTTTCGGGTTTCGAGGTATT
*
4807647 CGGGTTTCCGGCTTTTCG-GGT-TT
1 CGGGTTT-CGG-GTTTCGAGGTATT
*
4807670 AAGGAGTTTCGGGTTTCCG-GGT-TT
1 -CGG-GTTTCGGGTTT-CGAGGTATT
4807694 CGGGTTTCGGGTTTCG-GGT-TT
1 CGGGTTTCGGGTTTCGAGGTATT
4807715 CGGGTTTCGGGTTTC
1 CGGGTTTCGGGTTTC
4807730 CGGAGTTTCG
Statistics
Matches: 4744, Mismatches: 302, Indels: 1427
0.73 0.05 0.22
Matches are distributed among these distances:
16 4 0.00
17 1 0.00
18 35 0.01
19 217 0.05
20 517 0.11
21 895 0.19
22 1052 0.22
23 813 0.17
24 569 0.12
25 325 0.07
26 116 0.02
27 108 0.02
28 30 0.01
29 33 0.01
30 22 0.00
31 4 0.00
32 3 0.00
ACGTcount: A:0.05, C:0.15, G:0.41, T:0.39
Consensus pattern (23 bp):
CGGGTTTCGGGTTTCGAGGTATT
Found at i:4802142 original size:8 final size:7
Alignment explanation
Indices: 4801845--4807740 Score: 4254
Period size: 7 Copynumber: 802.3 Consensus size: 7
4801835 GGGTTATCAG
*
4801845 GGGTTTG
1 GGGTTTC
4801852 GGGTTT-
1 GGGTTTC
*
4801858 GGGCTTTG
1 GGG-TTTC
4801866 GGGTTTGC
1 GGGTTT-C
*
4801874 GGGTTTG
1 GGGTTTC
*
4801881 GGGTTTG
1 GGGTTTC
*
4801888 GGGGTT-
1 GGGTTTC
4801894 GGGTTT-
1 GGGTTTC
* *
4801900 GGGGTTG
1 GGGTTTC
4801907 GAGGATTT-
1 G-GG-TTTC
*
4801915 GGGTTTG
1 GGGTTTC
4801922 GGGTTT-
1 GGGTTTC
4801928 GGGTATTC
1 GGGT-TTC
4801936 -GGTTTC
1 GGGTTTC
4801942 -GGTTTAC
1 GGGTTT-C
4801949 GGGTTTAC
1 GGGTTT-C
4801957 GGGTTTC
1 GGGTTTC
4801964 GAGGTATTC
1 G-GGT-TTC
*
4801973 GGGTTGC
1 GGGTTTC
4801980 -GGTTTC
1 GGGTTTC
4801986 GGGTACTT-
1 GGGT--TTC
4801994 GGGTTTC
1 GGGTTTC
4802001 GGGTTCTCC
1 GGGTT-T-C
*
4802010 GGGATATC
1 GGG-TTTC
4802018 GGGGTTT-
1 -GGGTTTC
*
4802025 GGGATTC
1 GGGTTTC
4802032 GGG--TC
1 GGGTTTC
4802037 GAGAGTATTC
1 G-G-GT-TTC
4802047 GCGGTTTCC
1 G-GGTTT-C
4802056 GAGG-TTC
1 G-GGTTTC
4802063 GGAGTCTTC
1 GG-GT-TTC
4802072 GGGTTAATC
1 GGGTT--TC
*
4802081 AGGTTTC
1 GGGTTTC
*
4802088 -GCTTTC
1 GGGTTTC
4802094 GAGGATTTC
1 G-GG-TTTC
4802103 AGGG-TTC
1 -GGGTTTC
4802110 GGGTTTTC
1 GGG-TTTC
4802118 -GG-TTC
1 GGGTTTC
4802123 -GGTTTC
1 GGGTTTC
4802129 GGGTTTC
1 GGGTTTC
4802136 GGGGTTTC
1 -GGGTTTC
4802144 -GGTTTC
1 GGGTTTC
4802150 GGG-TTC
1 GGGTTTC
4802156 GGGTCTTC
1 GGGT-TTC
4802164 -GGTTTAC
1 GGGTTT-C
4802171 GAGGTTTC
1 G-GGTTTC
4802179 GAGGTTTTC
1 G-GG-TTTC
*
4802188 GGGGTT-
1 GGGTTTC
* *
4802194 AGGTGATC
1 GGGT-TTC
4802202 GGGTTTC
1 GGGTTTC
*
4802209 GGG-GTC
1 GGGTTTC
4802215 GGGTATTC
1 GGGT-TTC
*
4802223 GGGTTGC
1 GGGTTTC
4802230 GGGTTTCC
1 GGGTTT-C
4802238 GAGGTTTC
1 G-GGTTTC
4802246 GGGGTTTTC
1 -GGG-TTTC
4802255 GGGTTTC
1 GGGTTTC
4802262 GGGTTTC
1 GGGTTTC
*
4802269 GAAGG-GTC
1 G--GGTTTC
4802277 GGGTATTC
1 GGGT-TTC
4802285 GGGTTATCC
1 GGGTT-T-C
4802294 GAGGTTTC
1 G-GGTTTC
4802302 GGGTTTC
1 GGGTTTC
4802309 GGGTTTCGC
1 GGGTTT--C
4802318 GGGTTATC
1 GGGTT-TC
4802326 -GGTTTC
1 GGGTTTC
*
4802332 -GG--CC
1 GGGTTTC
4802336 GGGTTTCGC
1 GGGTTT--C
4802345 GGGTTTC
1 GGGTTTC
4802352 -GGTTATC
1 GGGTT-TC
4802359 -GGTTTC
1 GGGTTTC
*
4802365 AGGTTTCC
1 GGGTTT-C
*
4802373 GGGGTTC
1 GGGTTTC
4802380 GGGTTTC
1 GGGTTTC
4802387 GGGTTTC
1 GGGTTTC
4802394 GGGTTTC
1 GGGTTTC
4802401 GGGTTTC
1 GGGTTTC
*
4802408 GGAG-GTC
1 GG-GTTTC
4802415 GGGTTTC
1 GGGTTTC
4802422 GGGTTTC
1 GGGTTTC
4802429 GGGTTTC
1 GGGTTTC
4802436 GGG-TTC
1 GGGTTTC
4802442 GAGGTTTCTC
1 G-GG-TT-TC
4802452 GGGTTTC
1 GGGTTTC
4802459 GGGTTTAC
1 GGGTTT-C
4802467 GAGGTTTTC
1 G-GG-TTTC
4802476 GGGATTTC
1 GGG-TTTC
4802484 -GGTTTC
1 GGGTTTC
4802490 AGCGAGTTTC
1 -G-G-GTTTC
4802500 GGGTTTC
1 GGGTTTC
4802507 GGGTTTC
1 GGGTTTC
*
4802514 GGGTTAC
1 GGGTTTC
4802521 GGGTTGTC
1 GGGTT-TC
4802529 GGG-TTC
1 GGGTTTC
4802535 -GGTTTC
1 GGGTTTC
4802541 GGGTTTTCTGC
1 GGG--TT-T-C
4802552 GGGTTATC
1 GGGTT-TC
4802560 GGGGTTTC
1 -GGGTTTC
4802568 GGGTTTC
1 GGGTTTC
*
4802575 GGG-TGC
1 GGGTTTC
4802581 GGGTTATC
1 GGGTT-TC
4802589 GGG-TTC
1 GGGTTTC
4802595 GGGTTTTC
1 GGG-TTTC
4802603 -GGTTTC
1 GGGTTTC
4802609 GGGGTTTC
1 -GGGTTTC
4802617 GGGTTTCC
1 GGGTTT-C
4802625 GGGTTTTC
1 GGG-TTTC
*
4802633 GGGTATGC
1 GGGT-TTC
4802641 GCGGTTT-
1 G-GGTTTC
4802648 GCGG-TTC
1 G-GGTTTC
4802655 GGGGTTTC
1 -GGGTTTC
4802663 -GGTTTCC
1 GGGTTT-C
4802670 GGGTTTC
1 GGGTTTC
4802677 GGGTTTC
1 GGGTTTC
4802684 GGGTTTC
1 GGGTTTC
*
4802691 ACGGTTTC
1 -GGGTTTC
4802699 -GGTTTC
1 GGGTTTC
4802705 GGGTTTC
1 GGGTTTC
4802712 GGGTTTC
1 GGGTTTC
4802719 GGGTTTC
1 GGGTTTC
4802726 GGGTTTC
1 GGGTTTC
4802733 AGGGTTCTTC
1 -GGG-T-TTC
*
4802743 GGGTGTC
1 GGGTTTC
4802750 GGGTTTC
1 GGGTTTC
4802757 AGGGGTTTC
1 --GGGTTTC
4802766 GGGTTTC
1 GGGTTTC
*
4802773 GGGTTGC
1 GGGTTTC
4802780 GGGTTTC
1 GGGTTTC
*
4802787 GAAGTTTC
1 G-GGTTTC
*
4802795 GGGTATCC
1 GGGT-TTC
4802803 AGGGTTTC
1 -GGGTTTC
4802811 GGGATTTC
1 GGG-TTTC
4802819 GGGTTTC
1 GGGTTTC
4802826 GGG--TC
1 GGGTTTC
4802831 GGGTTATATTCC
1 GGG---T-TT-C
4802843 GGG-TTC
1 GGGTTTC
*
4802849 GGG-ATC
1 GGGTTTC
4802855 GGGTTTC
1 GGGTTTC
4802862 GGGTTTC
1 GGGTTTC
4802869 GGGTATTCC
1 GGGT-TT-C
4802878 GGG-TTC
1 GGGTTTC
4802884 GGGTTTC
1 GGGTTTC
*
4802891 AGGTTTC
1 GGGTTTC
4802898 GGGTTTC
1 GGGTTTC
4802905 GGAG-TTC
1 GG-GTTTC
*
4802912 GAGTATTC
1 GGGT-TTC
* *
4802920 CGGTTTA
1 GGGTTTC
4802927 GGG-TTC
1 GGGTTTC
*
4802933 GGGTGTC
1 GGGTTTC
*
4802940 GGTTTTCC
1 GGGTTT-C
*
4802948 GGGGTTC
1 GGGTTTC
4802955 GGCGTTTC
1 GG-GTTTC
4802963 GGGTTTC
1 GGGTTTC
4802970 GGAGTTTCGGC
1 GG-GTTT---C
4802981 AGGGTTTAC
1 -GGGTTT-C
*
4802990 GGGTTCC
1 GGGTTTC
*
4802997 GGGTTGC
1 GGGTTTC
*
4803004 GTGGTATC
1 G-GGTTTC
4803012 -GGTTTCC
1 GGGTTT-C
4803019 GGAGTTTC
1 GG-GTTTC
4803027 GGGTTTTC
1 GGG-TTTC
4803035 GGGTTTC
1 GGGTTTC
4803042 GGGTTTC
1 GGGTTTC
4803049 AGGGTTTC
1 -GGGTTTC
4803057 GGGTTTC
1 GGGTTTC
* *
4803064 GTGTGTC
1 GGGTTTC
4803071 -GGTTTC
1 GGGTTTC
4803077 GGGTTTC
1 GGGTTTC
*
4803084 GGGCGTTC
1 GGG-TTTC
4803092 -GGTTTC
1 GGGTTTC
*
4803098 GGGTTGC
1 GGGTTTC
4803105 GGGTTTC
1 GGGTTTC
4803112 GGG-TTC
1 GGGTTTC
4803118 -GGTTTC
1 GGGTTTC
4803124 GGG-TTC
1 GGGTTTC
4803130 GGGTTTC
1 GGGTTTC
4803137 AGGAGTTTC
1 -GG-GTTTC
4803146 GGGTTTC
1 GGGTTTC
4803153 GGGATTTTC
1 GGG--TTTC
4803162 GGGTTTTC
1 GGG-TTTC
4803170 -GGTTTC
1 GGGTTTC
4803176 GGGTTTTC
1 GGG-TTTC
4803184 GGGTTTC
1 GGGTTTC
4803191 GGGTTTTC
1 GGG-TTTC
4803199 GGGTTTC
1 GGGTTTC
4803206 GGGTAATTC
1 GGGT--TTC
4803215 GGGTTATGC
1 GGGTT-T-C
4803224 GGGATCTTTC
1 GGG---TTTC
4803234 GTGG-TTC
1 G-GGTTTC
*
4803241 GGAGTGTC
1 GG-GTTTC
4803249 -GG-TTC
1 GGGTTTC
*
4803254 GAGTTTTC
1 G-GGTTTC
4803262 -GGTTTC
1 GGGTTTC
4803268 GGGTTTC
1 GGGTTTC
4803275 GGGTTTCC
1 GGGTTT-C
4803283 AGGGTTTC
1 -GGGTTTC
4803291 GGG-TTC
1 GGGTTTC
*
4803297 GAGGTTGCC
1 G-GGTT-TC
4803306 GGGTTTC
1 GGGTTTC
4803313 GGGTTTC
1 GGGTTTC
4803320 GGGTTTC
1 GGGTTTC
4803327 GGGTTTC
1 GGGTTTC
4803334 GGGTTATC
1 GGGTT-TC
4803342 -GGTTTC
1 GGGTTTC
4803348 GGGTATATC
1 GGGT-T-TC
4803357 GGGTATTAC
1 GGGT-TT-C
* *
4803366 GGGGATGC
1 -GGGTTTC
4803374 GGGTTTC
1 GGGTTTC
4803381 GGGTTTC
1 GGGTTTC
4803388 GGGTTTCTC
1 GGG-TT-TC
4803397 GGG-TTC
1 GGGTTTC
4803403 GGGTTTC
1 GGGTTTC
*
4803410 GGAGTTGC
1 GG-GTTTC
*
4803418 GGGTGTC
1 GGGTTTC
*
4803425 GGAGGTTC
1 GG-GTTTC
4803433 GGGCTATTC
1 GGG-T-TTC
4803442 GGGTTCTC
1 GGGTT-TC
4803450 GGGTTTC
1 GGGTTTC
4803457 GGGTTTC
1 GGGTTTC
*
4803464 GGTATTTC
1 GG-GTTTC
4803472 GGGTTTC
1 GGGTTTC
4803479 GGGTTTC
1 GGGTTTC
4803486 GGG-TTC
1 GGGTTTC
4803492 GGG-TTC
1 GGGTTTC
4803498 GGGTTTC
1 GGGTTTC
*
4803505 GGGGTATC
1 -GGGTTTC
4803513 GGGGTTTC
1 -GGGTTTC
4803521 GGGTTTAC
1 GGGTTT-C
*
4803529 GGGATGATC
1 GGG-T-TTC
4803538 -GGTTTC
1 GGGTTTC
4803544 GGGTTATC
1 GGGTT-TC
4803552 GGGTTTC
1 GGGTTTC
*
4803559 -GG-TAC
1 GGGTTTC
4803564 GGGTTTC
1 GGGTTTC
4803571 GGGTTTC
1 GGGTTTC
4803578 GCGGAAATTTC
1 G-GG---TTTC
*
4803589 GGGTTGC
1 GGGTTTC
4803596 AGGGTTTC
1 -GGGTTTC
4803604 -GGTTTC
1 GGGTTTC
4803610 GGGTTTC
1 GGGTTTC
4803617 -GGTATTC
1 GGGT-TTC
4803624 GGGTTTC
1 GGGTTTC
4803631 GGGTTTC
1 GGGTTTC
4803638 GGGTTTC
1 GGGTTTC
4803645 GGAG-TTC
1 GG-GTTTC
4803652 GGGTTTC
1 GGGTTTC
4803659 GGGTTTC
1 GGGTTTC
4803666 GGGTTTC
1 GGGTTTC
*
4803673 GGGTGTC
1 GGGTTTC
4803680 GGGTTTC
1 GGGTTTC
4803687 GGGTTTC
1 GGGTTTC
4803694 TGGGTATTC
1 -GGGT-TTC
4803703 GGG-TT-
1 GGGTTTC
*
4803708 AGGTTTC
1 GGGTTTC
4803715 GGGTTTTTCCC
1 GGG--TTT--C
4803726 GGGGTTTC
1 -GGGTTTC
*
4803734 GGTATTTC
1 GG-GTTTC
4803742 GGGTTTCCC
1 GGGTTT--C
4803751 GGGTTATC
1 GGGTT-TC
4803759 GGGTTTC
1 GGGTTTC
4803766 GGGTTTC
1 GGGTTTC
4803773 AGGGATATTC
1 -GGG-T-TTC
4803783 GGG-TTC
1 GGGTTTC
*
4803789 TGGTTTC
1 GGGTTTC
4803796 GGGTTTC
1 GGGTTTC
4803803 GGGGGTTTC
1 --GGGTTTC
4803812 AGGGTTTC
1 -GGGTTTC
4803820 GGGGTATTC
1 -GGGT-TTC
4803829 GGGTTCTC
1 GGGTT-TC
*
4803837 GAGTTTC
1 GGGTTTC
4803844 GGGTTTC
1 GGGTTTC
4803851 -GGTTTC
1 GGGTTTC
*
4803857 GGGGTTC
1 GGGTTTC
4803864 -GGTTTGC
1 GGGTTT-C
4803871 GGGTTTC
1 GGGTTTC
4803878 GGGTTTC
1 GGGTTTC
4803885 TGGGATTTC
1 -GGG-TTTC
4803894 GGGTTCTC
1 GGGTT-TC
4803902 GGGTTTC
1 GGGTTTC
*
4803909 GTGTTTGC
1 GGGTTT-C
*
4803917 CGGTTTC
1 GGGTTTC
4803924 -GG-TTC
1 GGGTTTC
4803929 GGGTTTAC
1 GGGTTT-C
4803937 GGGTTATAC
1 GGGTT-T-C
4803946 GGGTTTC
1 GGGTTTC
4803953 -GGTTTC
1 GGGTTTC
4803959 GGGATTTC
1 GGG-TTTC
4803967 GGGTTTC
1 GGGTTTC
4803974 AGGGTTATC
1 -GGGTT-TC
4803983 AGGGTAAATCTC
1 -GGGT---T-TC
4803995 AGGGATTATC
1 -GGG-TT-TC
4804005 GGGTTTC
1 GGGTTTC
4804012 -GGTTTC
1 GGGTTTC
4804018 GGGTTTC
1 GGGTTTC
4804025 GGGTTTC
1 GGGTTTC
* *
4804032 ACGGTTGC
1 -GGGTTTC
4804040 GGGTTTC
1 GGGTTTC
4804047 -GGTTTC
1 GGGTTTC
4804053 GGGTTTC
1 GGGTTTC
*
4804060 ---TCTC
1 GGGTTTC
4804064 GGGTTTC
1 GGGTTTC
4804071 GGGTTTC
1 GGGTTTC
4804078 GGGTTTC
1 GGGTTTC
*
4804085 GGGTGTC
1 GGGTTTC
4804092 GGGTTCTC
1 GGGTT-TC
4804100 GGGTTTC
1 GGGTTTC
4804107 GGGTTTC
1 GGGTTTC
4804114 GGGATTTC
1 GGG-TTTC
4804122 GGGTATTC
1 GGGT-TTC
*
4804130 GGGTTAC
1 GGGTTTC
4804137 GGGTTTTC
1 GGG-TTTC
4804145 GGGATTTC
1 GGG-TTTC
*
4804153 GGGTTAC
1 GGGTTTC
4804160 GGGTTTC
1 GGGTTTC
4804167 GGGTTTCC
1 GGGTTT-C
4804175 GGGTTTC
1 GGGTTTC
*
4804182 GGGATTC
1 GGGTTTC
4804189 GGGTTTC
1 GGGTTTC
*
4804196 GAGGTGTGC
1 G-GGT-TTC
4804205 GGGGTTTC
1 -GGGTTTC
4804213 GGGTTTC
1 GGGTTTC
4804220 GGGTTTC
1 GGGTTTC
* *
4804227 GAG-CT-
1 GGGTTTC
*
4804232 GCGTTTC
1 GGGTTTC
4804239 GAGGTTTC
1 G-GGTTTC
4804247 GCGGTTTC
1 G-GGTTTC
4804255 GGGTTTTC
1 GGG-TTTC
4804263 GGG-TTC
1 GGGTTTC
4804269 AGGGTTTC
1 -GGGTTTC
*
4804277 GGGCTATC
1 GGG-TTTC
4804285 GGGTAGTTC
1 GGGT--TTC
4804294 GGAG-TT-
1 GG-GTTTC
4804300 GGGTTTC
1 GGGTTTC
4804307 -GG-TTC
1 GGGTTTC
4804312 GGGTTTC
1 GGGTTTC
4804319 GGGTTTC
1 GGGTTTC
4804326 GGGTTTAC
1 GGGTTT-C
4804334 AGGGTTTC
1 -GGGTTTC
4804342 GAGGTTTTC
1 G-GG-TTTC
*
4804351 CGG-TTC
1 GGGTTTC
4804357 -GG-TTC
1 GGGTTTC
**
4804362 GGGGTGGC
1 -GGGTTTC
4804370 GGGTTTC
1 GGGTTTC
*
4804377 GGGTTCGC
1 GGGTT-TC
4804385 GGGTTTC
1 GGGTTTC
4804392 -GGTTTC
1 GGGTTTC
* *
4804398 CGGTTTA
1 GGGTTTC
4804405 GGGTATTC
1 GGGT-TTC
*
4804413 GGGTTGC
1 GGGTTTC
4804420 GGGTTTC
1 GGGTTTC
4804427 GGG-TTC
1 GGGTTTC
*
4804433 GTGTTTC
1 GGGTTTC
*
4804440 GGGTTGC
1 GGGTTTC
4804447 GGGTTTC
1 GGGTTTC
4804454 GGGGTTTC
1 -GGGTTTC
4804462 GGGTTTC
1 GGGTTTC
4804469 GGGTTT-
1 GGGTTTC
4804475 GGGTTTC
1 GGGTTTC
4804482 GGGTTTC
1 GGGTTTC
4804489 GGGTTCGGTC
1 GGGTT---TC
4804499 GGGTCTTC
1 GGGT-TTC
4804507 GGGTTTC
1 GGGTTTC
4804514 -GG-TTC
1 GGGTTTC
4804519 GGGTTTTC
1 GGG-TTTC
4804527 TGGGTTTC
1 -GGGTTTC
4804535 GGGTATTC
1 GGGT-TTC
4804543 GGGTTTC
1 GGGTTTC
*
4804550 GGGGTTC
1 GGGTTTC
4804557 GGGTTTC
1 GGGTTTC
*
4804564 GGGTTAC
1 GGGTTTC
4804571 GGGTTTC
1 GGGTTTC
4804578 GGGGTATTC
1 -GGGT-TTC
4804587 GGGTTTTC
1 GGG-TTTC
4804595 GGGTATTC
1 GGGT-TTC
4804603 GGGTTTCC
1 GGGTTT-C
4804611 GGGTTTC
1 GGGTTTC
*
4804618 GGATTTCC
1 GGGTTT-C
*
4804626 GGGTTGC
1 GGGTTTC
4804633 GGAGTTATC
1 GG-GTT-TC
4804642 -GG-TTC
1 GGGTTTC
4804647 GGGTTTTC
1 GGG-TTTC
*
4804655 GGTTTTATTC
1 GG--GT-TTC
4804665 GGGTTTC
1 GGGTTTC
4804672 GGGTTATC
1 GGGTT-TC
*
4804680 GGGATGTC
1 GGG-TTTC
4804688 GGGTTTC
1 GGGTTTC
*
4804695 GGGTATC
1 GGGTTTC
*
4804702 GGTATTTC
1 GG-GTTTC
4804710 GGGTTTTC
1 GGG-TTTC
4804718 GGG-TTC
1 GGGTTTC
4804724 GCGGTTCTC
1 G-GGTT-TC
4804733 GGGTTTC
1 GGGTTTC
4804740 GAGG-TTC
1 G-GGTTTC
4804747 GGGTTTC
1 GGGTTTC
4804754 GGGTTTC
1 GGGTTTC
*
4804761 GGGATGTC
1 GGG-TTTC
4804769 GGGTTTC
1 GGGTTTC
4804776 GGGTTTC
1 GGGTTTC
4804783 GGGTTTC
1 GGGTTTC
*
4804790 GGGTATC
1 GGGTTTC
4804797 GGAGTTTAC
1 GG-GTTT-C
*
4804806 GGTTTATC
1 GGGTT-TC
4804814 GGGTTTAC
1 GGGTTT-C
4804822 GGG-TTC
1 GGGTTTC
4804828 GGGTTTC
1 GGGTTTC
4804835 --G-TTC
1 GGGTTTC
4804839 GGGTTTC
1 GGGTTTC
4804846 GGG-TTC
1 GGGTTTC
4804852 -GGTTTC
1 GGGTTTC
4804858 GGGGTTTTC
1 -GGG-TTTC
4804867 -GGTTTC
1 GGGTTTC
4804873 -GGTTTC
1 GGGTTTC
4804879 GGGTTTC
1 GGGTTTC
4804886 GGGTTTC
1 GGGTTTC
4804893 -GG-TTC
1 GGGTTTC
4804898 GGGTTTC
1 GGGTTTC
4804905 GGG-TTC
1 GGGTTTC
4804911 GGGTTTC
1 GGGTTTC
4804918 -GG-TTC
1 GGGTTTC
*
4804923 AGG-TTC
1 GGGTTTC
4804929 GGGTTTC
1 GGGTTTC
4804936 GGGTTTAC
1 GGGTTT-C
4804944 -GGTTTC
1 GGGTTTC
4804950 GGGGTGTTC
1 -GGGT-TTC
4804959 GGGTTTTC
1 GGG-TTTC
4804967 GGGTTTC
1 GGGTTTC
*
4804974 GGGATTCC
1 GGG-TTTC
4804982 GGGATTTC
1 GGG-TTTC
*
4804990 GGGGTT-
1 GGGTTTC
4804996 GCGGTTTC
1 G-GGTTTC
4805004 GGGGTTTC
1 -GGGTTTC
4805012 GGGTTTC
1 GGGTTTC
4805019 GGGTTTC
1 GGGTTTC
4805026 AGGG-TTC
1 -GGGTTTC
4805033 GAGGTTTC
1 G-GGTTTC
4805041 -GGTTTC
1 GGGTTTC
4805047 -GGTTTC
1 GGGTTTC
4805053 GGGTGATTC
1 GGGT--TTC
4805062 GCGGTTTCC
1 G-GGTTT-C
4805071 GGGTTTC
1 GGGTTTC
4805078 AGGGTTTC
1 -GGGTTTC
4805086 GGGTTTC
1 GGGTTTC
4805093 GGGTTTC
1 GGGTTTC
4805100 GGAG-TTC
1 GG-GTTTC
4805107 GGGGTATTC
1 -GGGT-TTC
4805116 GGGTTTTC
1 GGG-TTTC
4805124 GGAGTTTC
1 GG-GTTTC
4805132 GGGTTTC
1 GGGTTTC
4805139 GGAGTATTC
1 GG-GT-TTC
4805148 GGGATCTTGC
1 GGG-T-TT-C
4805158 GGG-TTC
1 GGGTTTC
4805164 -GGTTTC
1 GGGTTTC
4805170 GGGGGTTTC
1 --GGGTTTC
4805179 GGGTTTC
1 GGGTTTC
4805186 GGGTTTC
1 GGGTTTC
4805193 GGGTTTC
1 GGGTTTC
4805200 GGGTTTC
1 GGGTTTC
4805207 --GTTTC
1 GGGTTTC
*
4805212 GGGGTTC
1 GGGTTTC
4805219 GGGTATTC
1 GGGT-TTC
*
4805227 GGGTTCGCC
1 GGGTT--TC
4805236 GGGGGGTTTGC
1 ---GGGTTT-C
4805247 GGGTTT-
1 GGGTTTC
4805253 -GGTTTC
1 GGGTTTC
4805259 -GGTTTC
1 GGGTTTC
4805265 --GTTTGC
1 GGGTTT-C
4805271 GGGTTTC
1 GGGTTTC
4805278 -GGTTTC
1 GGGTTTC
4805284 -GGTTTC
1 GGGTTTC
4805290 -GGTTTC
1 GGGTTTC
4805296 AGGAGTTTC
1 -GG-GTTTC
4805305 GGGTTTC
1 GGGTTTC
4805312 GGG-TTC
1 GGGTTTC
4805318 GGGTTTTC
1 GGG-TTTC
4805326 AGGGCATTTC
1 -GGG--TTTC
4805336 GGGTTTC
1 GGGTTTC
4805343 GGGTTTC
1 GGGTTTC
4805350 GGAGTTTC
1 GG-GTTTC
4805358 -GGTTTC
1 GGGTTTC
4805364 AGGG-TTC
1 -GGGTTTC
4805371 AGGAGTTTAC
1 -GG-GTTT-C
4805381 AGGGTTTC
1 -GGGTTTC
*
4805389 GGGTTGC
1 GGGTTTC
4805396 AGGGTTGTC
1 -GGGTT-TC
**
4805405 GGGGTGGC
1 -GGGTTTC
4805413 GGGTCTTC
1 GGGT-TTC
4805421 GGGTTTC
1 GGGTTTC
4805428 GGGTTTTC
1 GGG-TTTC
4805436 GGGTTTC
1 GGGTTTC
4805443 GGGGTATTC
1 -GGGT-TTC
*
4805452 ---TACTC
1 GGGT-TTC
4805457 GGGTTATC
1 GGGTT-TC
4805465 GGGTTTC
1 GGGTTTC
4805472 -GGTTTC
1 GGGTTTC
4805478 AGGGTATTC
1 -GGGT-TTC
4805487 GGGTTTC
1 GGGTTTC
4805494 GGG-TTC
1 GGGTTTC
4805500 GGGTTTC
1 GGGTTTC
*
4805507 GGGTGTC
1 GGGTTTC
4805514 GGGTATTC
1 GGGT-TTC
4805522 AGGGTTTC
1 -GGGTTTC
4805530 GGGTTTC
1 GGGTTTC
4805537 GGGTTTCCTC
1 GGG-TT--TC
4805547 GGGTTTC
1 GGGTTTC
4805554 -GGTTTC
1 GGGTTTC
4805560 GGGTATTC
1 GGGT-TTC
4805568 AGGGTTTC
1 -GGGTTTC
4805576 -GGTTTC
1 GGGTTTC
4805582 GGAGTTTC
1 GG-GTTTC
*
4805590 GGGTGTC
1 GGGTTTC
4805597 GGGTTTC
1 GGGTTTC
*
4805604 GGGTTGC
1 GGGTTTC
*
4805611 GGGTTGC
1 GGGTTTC
4805618 -GGTTTC
1 GGGTTTC
4805624 GGGTTTC
1 GGGTTTC
*
4805631 GGG-TTG
1 GGGTTTC
4805637 GGGTTTTC
1 GGG-TTTC
4805645 GGGTTTC
1 GGGTTTC
4805652 GGGGTTTC
1 -GGGTTTC
4805660 -GGTTTCC
1 GGGTTT-C
4805667 GGGATTTC
1 GGG-TTTC
4805675 GGG-TTC
1 GGGTTTC
*
4805681 -GGTTAGC
1 GGGTT-TC
4805688 GGGTTTC
1 GGGTTTC
4805695 GGGTTTCC
1 GGGTTT-C
4805703 GGGGTTTC
1 -GGGTTTC
*
4805711 ACGG-TTC
1 -GGGTTTC
4805718 GAGGATTTC
1 G-GG-TTTC
4805727 GGGTATATC
1 GGGT-T-TC
4805736 GGGTTTC
1 GGGTTTC
4805743 -GGTTTAC
1 GGGTTT-C
*
4805750 GGGTTAC
1 GGGTTTC
4805757 GGGTTCTTC
1 GGG-T-TTC
4805766 GGGTTTC
1 GGGTTTC
4805773 GGGTTTCC
1 GGGTTT-C
4805781 GGGTTTC
1 GGGTTTC
*
4805788 GGGTGTC
1 GGGTTTC
4805795 GGGTCTTTTC
1 GGG---TTTC
4805805 GGGTATTC
1 GGGT-TTC
4805813 GGGTTT-
1 GGGTTTC
4805819 GGGTTTC
1 GGGTTTC
4805826 AGGGTTTC
1 -GGGTTTC
*
4805834 GGGTGTC
1 GGGTTTC
4805841 GGGTTT-
1 GGGTTTC
*
4805847 GGAGATTC
1 GG-GTTTC
4805855 GGGTTTC
1 GGGTTTC
4805862 GGGTTT-
1 GGGTTTC
4805868 GCGGTTTAC
1 G-GGTTT-C
4805877 GGGTATTC
1 GGGT-TTC
4805885 GGGTTTC
1 GGGTTTC
4805892 GGGTTTCC
1 GGGTTT-C
4805900 GGGTTTC
1 GGGTTTC
4805907 GGGTTTCC
1 GGGTTT-C
*
4805915 GGGTTCC
1 GGGTTTC
4805922 GGGTCATTC
1 GGGT--TTC
4805931 GGAGTTTC
1 GG-GTTTC
4805939 GGAAGTTTC
1 GG--GTTTC
4805948 GGG--TC
1 GGGTTTC
4805953 GGGTTTC
1 GGGTTTC
4805960 GGAGTTTTC
1 GG-G-TTTC
4805969 GGAGTTTC
1 GG-GTTTC
4805977 GGGTTTC
1 GGGTTTC
4805984 GGGTTTC
1 GGGTTTC
4805991 GGCGTTTC
1 GG-GTTTC
*
4805999 GGGTTTA
1 GGGTTTC
*
4806006 GGGTGTC
1 GGGTTTC
*
4806013 GGTTTTATC
1 GG-GTT-TC
*
4806022 GTGTTTC
1 GGGTTTC
4806029 GGAGTTATC
1 GG-GTT-TC
4806038 AGGCGTTTC
1 -GG-GTTTC
*
4806047 TTCGGTTTC
1 --GGGTTTC
4806056 GGGTAATCTC
1 GGGT--T-TC
4806066 GGGTTTCC
1 GGGTTT-C
*
4806074 GGCGGTTC
1 GG-GTTTC
4806082 GGGTTTC
1 GGGTTTC
4806089 GGGTTTC
1 GGGTTTC
4806096 GGGTTTTCGC
1 GGG-TTT--C
4806106 GGGTTTC
1 GGGTTTC
4806113 -GGTTTC
1 GGGTTTC
4806119 AGGG-TTC
1 -GGGTTTC
*
4806126 GGG-GTC
1 GGGTTTC
4806132 GGGTTTC
1 GGGTTTC
4806139 GGGTTTC
1 GGGTTTC
4806146 GGGTTTC
1 GGGTTTC
* *
4806153 GGGGTGC
1 GGGTTTC
4806160 -GGTTTC
1 GGGTTTC
4806166 GGGTTTC
1 GGGTTTC
4806173 -GGTTTC
1 GGGTTTC
4806179 GGGTTTC
1 GGGTTTC
4806186 GGAGTTTC
1 GG-GTTTC
4806194 -GGTTTC
1 GGGTTTC
4806200 GGGTTTC
1 GGGTTTC
4806207 GGGTATTC
1 GGGT-TTC
4806215 GAGGTTTC
1 G-GGTTTC
4806223 GGGTAACTTAC
1 GGGT---TT-C
*
4806234 GGGTTCAC
1 GGGTT-TC
4806242 GGGTTTCC
1 GGGTTT-C
*
4806250 AGGTTTC
1 GGGTTTC
4806257 AAGGGTTTC
1 --GGGTTTC
4806266 GGGTTTC
1 GGGTTTC
4806273 GGGGGTTTTC
1 --GGG-TTTC
4806283 GAGGTATTTC
1 G-GG--TTTC
4806293 GGG-TTC
1 GGGTTTC
*
4806299 GGGGTTC
1 GGGTTTC
4806306 GGGTTTC
1 GGGTTTC
4806313 GGGTTTC
1 GGGTTTC
4806320 -GGTTTC
1 GGGTTTC
4806326 GGGTTATC
1 GGGTT-TC
4806334 ---TTTC
1 GGGTTTC
4806338 AGGG-TTC
1 -GGGTTTC
4806345 GGGATTTATC
1 GGG--TT-TC
4806355 GGGTTTC
1 GGGTTTC
**
4806362 GAGGTGGC
1 G-GGTTTC
4806370 -GG-TTC
1 GGGTTTC
4806375 GGGTTTC
1 GGGTTTC
4806382 GGAGTTTTC
1 GG-G-TTTC
4806391 GGCGTCTTC
1 GG-GT-TTC
4806400 GGGTTTC
1 GGGTTTC
4806407 GGGTTTC
1 GGGTTTC
4806414 GGCGTTTC
1 GG-GTTTC
4806422 GGGGTTTC
1 -GGGTTTC
4806430 GGGTTTAC
1 GGGTTT-C
4806438 GGGTTTC
1 GGGTTTC
4806445 GGGTTTC
1 GGGTTTC
4806452 GGAG-TTC
1 GG-GTTTC
*
4806459 AGGTTTC
1 GGGTTTC
4806466 -GGTTTC
1 GGGTTTC
4806472 GGGTTT-
1 GGGTTTC
4806478 GCGG-TTC
1 G-GGTTTC
4806485 GGGTTTC
1 GGGTTTC
4806492 GGGTTTC
1 GGGTTTC
*
4806499 GGGGTTCC
1 -GGGTTTC
4806507 GGGTTTAC
1 GGGTTT-C
4806515 GGGTTTC
1 GGGTTTC
4806522 GGGTATTTC
1 GGG--TTTC
4806531 -GGTTTAC
1 GGGTTT-C
4806538 GGGTTTTC
1 GGG-TTTC
4806546 GGGTTTC
1 GGGTTTC
4806553 GGGTTTC
1 GGGTTTC
4806560 GGGTTTC
1 GGGTTTC
4806567 GGGATTTC
1 GGG-TTTC
*
4806575 GGGATTGC
1 GGG-TTTC
4806583 GGGTTTC
1 GGGTTTC
4806590 GGGTTTC
1 GGGTTTC
4806597 AGGGTTTC
1 -GGGTTTC
4806605 GGGTTTC
1 GGGTTTC
4806612 AGGGTTTC
1 -GGGTTTC
4806620 GAGGTATATC
1 G-GGT-T-TC
*
4806630 -GCTTTC
1 GGGTTTC
4806636 GGG-TTC
1 GGGTTTC
4806642 GGGTATATCC
1 GGGT-T-T-C
4806652 GGGTTTC
1 GGGTTTC
4806659 GGGGTTTC
1 -GGGTTTC
*
4806667 GTGTTTC
1 GGGTTTC
*
4806674 GGGTTGGC
1 GGGTT-TC
*
4806682 GGGTTTA
1 GGGTTTC
*
4806689 GGGTGTC
1 GGGTTTC
*
4806696 GGGGTTC
1 GGGTTTC
4806703 -GGTTATC
1 GGGTT-TC
4806710 -GGTTTC
1 GGGTTTC
4806716 GGGTTTCC
1 GGGTTT-C
4806724 GGGTTTC
1 GGGTTTC
4806731 GGGTTTCC
1 GGGTTT-C
4806739 AGGAGTTTC
1 -GG-GTTTC
*
4806748 AGGGTATC
1 -GGGTTTC
4806756 GGGTTTC
1 GGGTTTC
4806763 GGGTTTC
1 GGGTTTC
4806770 GGGTTTTC
1 GGG-TTTC
4806778 GGGTTTC
1 GGGTTTC
4806785 GGGTTTTC
1 GGG-TTTC
4806793 GGGTTTC
1 GGGTTTC
4806800 GGGTTTC
1 GGGTTTC
4806807 GGGTTTC
1 GGGTTTC
4806814 GGGTTTC
1 GGGTTTC
4806821 GGGTTTGC
1 GGGTTT-C
4806829 GGG-TTC
1 GGGTTTC
4806835 -GGTTTC
1 GGGTTTC
4806841 GGGTTTC
1 GGGTTTC
4806848 GGGTTT-
1 GGGTTTC
4806854 GGGATTTC
1 GGG-TTTC
4806862 -GGTTTC
1 GGGTTTC
4806868 GGGTTTC
1 GGGTTTC
4806875 GGG-TTC
1 GGGTTTC
4806881 GAGGTTTC
1 G-GGTTTC
4806889 GGGTTTC
1 GGGTTTC
4806896 GGAGTTTTC
1 GG-G-TTTC
*
4806905 GGGTTCC
1 GGGTTTC
4806912 GGGTATTC
1 GGGT-TTC
4806920 GGGTTTC
1 GGGTTTC
4806927 GGGTTTC
1 GGGTTTC
4806934 GGGTTTC
1 GGGTTTC
4806941 GGGATTTTC
1 GGG--TTTC
*
4806950 GGGTGTC
1 GGGTTTC
4806957 -GGTTTC
1 GGGTTTC
4806963 -GGTTTC
1 GGGTTTC
4806969 GGGTTTCGC
1 GGGTTT--C
4806978 GGGTTTC
1 GGGTTTC
4806985 GGG-TTC
1 GGGTTTC
4806991 GGGTTATC
1 GGGTT-TC
4806999 GGG-TTC
1 GGGTTTC
*
4807005 GGGTTGC
1 GGGTTTC
4807012 GGGAATTTCC
1 GGG--TTT-C
4807022 GGGTTTC
1 GGGTTTC
4807029 GGG--TC
1 GGGTTTC
4807034 GGGTTTC
1 GGGTTTC
4807041 GGGTTATC
1 GGGTT-TC
4807049 GGGTTTC
1 GGGTTTC
*
4807056 GGGTTTA
1 GGGTTTC
4807063 GGGTTTC
1 GGGTTTC
4807070 -GG-TTC
1 GGGTTTC
*
4807075 GGGGTTC
1 GGGTTTC
4807082 GGGTTTC
1 GGGTTTC
4807089 GGGGTTTC
1 -GGGTTTC
4807097 -GGTTT-
1 GGGTTTC
4807102 -GGTTTC
1 GGGTTTC
4807108 GGGTATTC
1 GGGT-TTC
4807116 GGG-TTC
1 GGGTTTC
4807122 GGGTTTTAC
1 GGG-TTT-C
4807131 GGGTTTC
1 GGGTTTC
*
4807138 GGG-GTC
1 GGGTTTC
*
4807144 GGGTGTC
1 GGGTTTC
4807151 GGCGTTTC
1 GG-GTTTC
4807159 GGGTTTC
1 GGGTTTC
4807166 -GGTTTC
1 GGGTTTC
4807172 GGG-TTC
1 GGGTTTC
4807178 -GGTATTC
1 GGGT-TTC
*
4807185 GGGTGTC
1 GGGTTTC
4807192 GGGTTTC
1 GGGTTTC
4807199 GGGTTGTTC
1 GGG-T-TTC
4807208 GGGTTTC
1 GGGTTTC
4807215 -GGTTTC
1 GGGTTTC
4807221 GGGTTTTC
1 GGG-TTTC
**
4807229 GGGAGTC
1 GGGTTTC
*
4807236 GGGTATC
1 GGGTTTC
4807243 GGGTTATC
1 GGGTT-TC
*
4807251 GGGTTAC
1 GGGTTTC
4807258 GGGTTTC
1 GGGTTTC
4807265 AGGG-TTC
1 -GGGTTTC
*
4807272 GGGTTTA
1 GGGTTTC
*
4807279 GGGTGTC
1 GGGTTTC
*
4807286 GGGTTGC
1 GGGTTTC
*
4807293 CGGTATTCC
1 GGGT-TT-C
4807302 GGGTTTC
1 GGGTTTC
4807309 GGG-TTC
1 GGGTTTC
*
4807315 AGGTTTTCC
1 -GGGTTT-C
4807324 GGGTTTC
1 GGGTTTC
4807331 GGG-TTC
1 GGGTTTC
4807337 GGGTTTC
1 GGGTTTC
4807344 GGGTTTC
1 GGGTTTC
4807351 GGAG-TTC
1 GG-GTTTC
4807358 GGAGTTTC
1 GG-GTTTC
*
4807366 AAGGTTATC
1 -GGGTT-TC
4807375 GGG-TTC
1 GGGTTTC
4807381 GGG-TTC
1 GGGTTTC
4807387 GGGTTTTC
1 GGG-TTTC
4807395 GGGTTTC
1 GGGTTTC
4807402 GGGATTTC
1 GGG-TTTC
4807410 -GGTTTC
1 GGGTTTC
4807416 GGGTTTC
1 GGGTTTC
4807423 GGGTTTC
1 GGGTTTC
4807430 GGGTTTC
1 GGGTTTC
4807437 GGG-TTC
1 GGGTTTC
4807443 GGGTTTC
1 GGGTTTC
4807450 GGGTTTC
1 GGGTTTC
*
4807457 GAGGTTGC
1 G-GGTTTC
4807465 GGGTTTC
1 GGGTTTC
4807472 GGGTTTC
1 GGGTTTC
4807479 GGGTTTTC
1 GGG-TTTC
4807487 GGGTTATC
1 GGGTT-TC
4807495 GGGGTTTTC
1 -GGG-TTTC
4807504 GGGGTTTC
1 -GGGTTTC
4807512 GAGAGTTTC
1 G-G-GTTTC
4807521 GGGTTTC
1 GGGTTTC
**
4807528 -GGTTGG
1 GGGTTTC
4807534 GGGTTTC
1 GGGTTTC
4807541 -GGTTTC
1 GGGTTTC
4807547 GGGTTATC
1 GGGTT-TC
4807555 GGGTTTCC
1 GGGTTT-C
4807563 GGGTTTTC
1 GGG-TTTC
4807571 --G-TTC
1 GGGTTTC
4807575 GGAG-TTC
1 GG-GTTTC
4807582 GGGATTTCC
1 GGG-TTT-C
4807591 GAGGTTTC
1 G-GGTTTC
4807599 GAGGTTTC
1 G-GGTTTC
4807607 GGGGTTTC
1 -GGGTTTC
4807615 GGGTTTC
1 GGGTTTC
4807622 GGGTTTC
1 GGGTTTC
**
4807629 GGGTGGC
1 GGGTTTC
*
4807636 -GGTTGC
1 GGGTTTC
4807642 GGG-TTC
1 GGGTTTC
4807648 GGGTTTCC
1 GGGTTT-C
*
4807656 GGCTTTTC
1 GG-GTTTC
*
4807664 GGGTTTAA
1 GGGTTT-C
4807672 GGAGTTTC
1 GG-GTTTC
4807680 GGGTTTCC
1 GGGTTT-C
4807688 GGGTTTC
1 GGGTTTC
4807695 GGGTTTC
1 GGGTTTC
4807702 GGGTTTC
1 GGGTTTC
4807709 GGGTTTC
1 GGGTTTC
4807716 GGGTTTC
1 GGGTTTC
4807723 GGGTTTCC
1 GGGTTT-C
4807731 GGAGTTTC
1 GG-GTTTC
4807739 GG
1 GG
4807741 TTCTCCTCTC
Statistics
Matches: 4904, Mismatches: 329, Indels: 1311
0.75 0.05 0.20
Matches are distributed among these distances:
4 12 0.00
5 100 0.02
6 661 0.13
7 2164 0.44
8 1256 0.26
9 525 0.11
10 136 0.03
11 26 0.01
12 23 0.00
13 1 0.00
ACGTcount: A:0.05, C:0.15, G:0.41, T:0.39
Consensus pattern (7 bp):
GGGTTTC
Found at i:4802315 original size:14 final size:14
Alignment explanation
Indices: 4801009--4807740 Score: 4387
Period size: 14 Copynumber: 459.6 Consensus size: 14
4800999 TGGGGTTTGT
* **
4801009 GGGTTTGGGGTTGG
1 GGGTTTCGGGTTTC
* *
4801023 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
*
4801037 GGGTTT-GGGTTTG
1 GGGTTTCGGGTTTC
* *
4801050 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801064 GGGTTTGGGGTTTTG
1 GGGTTTCGGG-TTTC
* *
4801079 GGGTTTTGGGGGTTTG
1 GGG-TTT-CGGGTTTC
** *
4801095 GGGTTGGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801109 GGGTTTTTGGGGTTTGG
1 GGG--TTTCGGGTTT-C
* *
4801126 GGGTTTGGGGTTTTG
1 GGGTTTCGGG-TTTC
* *
4801141 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801155 GGGTTTGGGGTTTTGG
1 GGGTTTCGGG-TTT-C
** *
4801171 GGGTTGGGGGTTTG
1 GGGTTTCGGGTTTC
*
4801185 GGGTTT-GGG-TTG
1 GGGTTTCGGGTTTC
*
4801197 GGGTTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801210 GGTGTTTGGGGTTTG
1 GG-GTTTCGGGTTTC
*
4801225 GGGTTT-GGGGTT-
1 GGGTTTCGGGTTTC
* *
4801237 GGGTTT-GGGGTTG
1 GGGTTTCGGGTTTC
* *
4801250 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801264 GGGTTT-GGGGTTG
1 GGGTTTCGGGTTTC
*
4801277 GGGTTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801290 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
4801304 GGGTTT-GGGTTT-
1 GGGTTTCGGGTTTC
*
4801316 GGG-GT-GGGTTT-
1 GGGTTTCGGGTTTC
* *
4801327 GGGGTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801340 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801354 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
*
4801368 GGGTTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801381 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801395 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801409 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801423 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801437 GGGTTGGTTGGGGTTTG
1 GGG-T--TTCGGGTTTC
* *
4801454 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
*
4801468 GGGTTTGGGGTTT-
1 GGGTTTCGGGTTTC
* * *
4801481 GGGGTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801495 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801509 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
*
4801523 GGGTTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801536 GGGGTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801549 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801563 GGGTTTGGGGTTTTG
1 GGGTTTCGGG-TTTC
*
4801578 GGGTTTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801591 GGGGTT-GGGTTTGG
1 GGGTTTCGGGTTT-C
* *
4801605 GGGTTTGGGGTTTG
1 GGGTTTCGGGTTTC
* *
4801619 GGGTTTGGGGTTGC
1 GGGTTTCGGGTTTC
** *
4801633 GGGAGTTGGGGGTTTG
1 -GG-GTTTCGGGTTTC
*
4801649 GGGTTATAGGCGTTT-
1 GGGTT-TCGG-GTTTC
* *
4801664 GGGTTATGGGGTTTTTG
1 GGGTT-TCGGG--TTTC
*
4801681 GGGTTTCTTAGGGGTTTG
1 GGGTTTC----GGGTTTC
* *
4801699 GGGCTTTAGAGGGTTTA
1 GGG-TTT--CGGGTTTC
* *
4801716 GGG-GTGGGGTTT-
1 GGGTTTCGGGTTTC
* *
4801728 GGGTTTTGGGTTTG
1 GGGTTTCGGGTTTC
* **
4801742 GGGTTTTGGGGTTGG
1 GGG-TTTCGGGTTTC
*
4801757 GGGTTTGGGGATTTGC
1 GGGTTTCGGG-TTT-C
* *
4801773 AGGGTTTGGGGTTATAG
1 -GGGTTTCGGGTT-T-C
*
4801790 GGGTTTAGGGGTTT-
1 GGGTTT-CGGGTTTC
* * *
4801804 GGGGTTGGGAGTTTGG
1 GGGTTTCGG-GTTT-C
*
4801820 GAGGCTGTT-GGG-TTG
1 G-GG-T-TTCGGGTTTC
*
4801835 GGGTTATCAGGGGTTTG
1 GGGTT-TC--GGGTTTC
*
4801852 GGGTTT-GGGCTTTG
1 GGGTTTCGGG-TTTC
*
4801866 GGGTTTGCGGGTTTG
1 GGGTTT-CGGGTTTC
* *
4801881 GGGTTTGGGGGTT-
1 GGGTTTCGGGTTTC
* *
4801894 GGGTTT-GGGGTTG
1 GGGTTTCGGGTTTC
*
4801907 GAGGATTT-GGGTTTG
1 G-GG-TTTCGGGTTTC
4801922 GGGTTT-GGGTATTC
1 GGGTTTCGGGT-TTC
4801936 -GGTTTC-GGTTTAC
1 GGGTTTCGGGTTT-C
4801949 GGGTTTACGGGTTTC
1 GGGTTT-CGGGTTTC
*
4801964 GAGGTATTCGGGTTGC
1 G-GGT-TTCGGGTTTC
4801980 -GGTTTCGGGTACTT-
1 GGGTTTCGGGT--TTC
4801994 GGGTTTCGGGTTCTCC
1 GGGTTTCGGGTT-T-C
*
4802010 GGGATATCGGGGTTT-
1 GGG-TTTC-GGGTTTC
*
4802025 GGGATTCGGG--TC
1 GGGTTTCGGGTTTC
4802037 GAGAGTATTCGCGGTTTCC
1 G-G-GT-TTCG-GGTTT-C
4802056 GAGG-TTCGGAGTCTTC
1 G-GGTTTCGG-GT-TTC
*
4802072 GGGTTAATCAGGTTTC
1 GGGTT--TCGGGTTTC
*
4802088 -GCTTTCGAGGATTTC
1 GGGTTTCG-GG-TTTC
4802103 AGGG-TTCGGGTTTTC
1 -GGGTTTCGGG-TTTC
4802118 -GG-TTC-GGTTTC
1 GGGTTTCGGGTTTC
4802129 GGGTTTCGGGGTTTC
1 GGGTTTC-GGGTTTC
4802144 -GGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4802156 GGGTCTTC-GGTTTAC
1 GGGT-TTCGGGTTT-C
4802171 GAGGTTTCGAGGTTTTC
1 G-GGTTTCG-GG-TTTC
* * *
4802188 GGGGTT-AGGTGATC
1 GGGTTTCGGGT-TTC
*
4802202 GGGTTTCGGG-GTC
1 GGGTTTCGGGTTTC
*
4802215 GGGTATTCGGGTTGC
1 GGGT-TTCGGGTTTC
4802230 GGGTTTCCGAGGTTTC
1 GGGTTT-CG-GGTTTC
4802246 GGGGTTTTCGGGTTTC
1 -GGG-TTTCGGGTTTC
*
4802262 GGGTTTCGAAGG-GTC
1 GGGTTTCG--GGTTTC
4802277 GGGTATTCGGGTTATCC
1 GGGT-TTCGGGTT-T-C
4802294 GAGGTTTCGGGTTTC
1 G-GGTTTCGGGTTTC
4802309 GGGTTTCGCGGGTTATC
1 GGGTTT--CGGGTT-TC
*
4802326 -GGTTTC-GG--CC
1 GGGTTTCGGGTTTC
4802336 GGGTTTCGCGGGTTTC
1 GGGTTT--CGGGTTTC
4802352 -GGTTATC-GGTTTC
1 GGGTT-TCGGGTTTC
* *
4802365 AGGTTTCCGGGGTTC
1 GGGTTT-CGGGTTTC
4802380 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4802394 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4802408 GGAG-GTCGGGTTTC
1 GG-GTTTCGGGTTTC
4802422 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4802436 GGG-TTCGAGGTTTCTC
1 GGGTTTCG-GG-TT-TC
4802452 GGGTTTCGGGTTTAC
1 GGGTTTCGGGTTT-C
4802467 GAGGTTTTCGGGATTTC
1 G-GG-TTTCGGG-TTTC
4802484 -GGTTTCAGCGAGTTTC
1 GGGTTTC-G-G-GTTTC
4802500 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4802514 GGGTTACGGGTTGTC
1 GGGTTTCGGGTT-TC
4802529 GGG-TTC-GGTTTC
1 GGGTTTCGGGTTTC
4802541 GGGTTTTCTGCGGGTTATC
1 GGG--TT-T-CGGGTT-TC
4802560 GGGGTTTCGGGTTTC
1 -GGGTTTCGGGTTTC
*
4802575 GGG-TGCGGGTTATC
1 GGGTTTCGGGTT-TC
4802589 GGG-TTCGGGTTTTC
1 GGGTTTCGGG-TTTC
4802603 -GGTTTCGGGGTTTC
1 GGGTTTC-GGGTTTC
4802617 GGGTTTCCGGGTTTTC
1 GGGTTT-CGGG-TTTC
*
4802633 GGGTATGCGCGGTTT-
1 GGGT-TTCG-GGTTTC
4802648 GCGG-TTCGGGGTTTC
1 G-GGTTTC-GGGTTTC
4802663 -GGTTTCCGGGTTTC
1 GGGTTT-CGGGTTTC
4802677 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4802691 ACGGTTTC-GGTTTC
1 -GGGTTTCGGGTTTC
4802705 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4802719 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4802733 AGGGTTCTTCGGGTGTC
1 -GGG-T-TTCGGGTTTC
4802750 GGGTTTCAGGGGTTTC
1 GGGTTTC--GGGTTTC
*
4802766 GGGTTTCGGGTTGC
1 GGGTTTCGGGTTTC
*
4802780 GGGTTTCGAAGTTTC
1 GGGTTTCG-GGTTTC
*
4802795 GGGTATCCAGGGTTTC
1 GGGT-TTC-GGGTTTC
4802811 GGGATTTCGGGTTTC
1 GGG-TTTCGGGTTTC
4802826 GGG--TCGGGTTATATTCC
1 GGGTTTCGGG---T-TT-C
*
4802843 GGG-TTCGGG-ATC
1 GGGTTTCGGGTTTC
4802855 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4802869 GGGTATTCCGGG-TTC
1 GGGT-TT-CGGGTTTC
*
4802884 GGGTTTCAGGTTTC
1 GGGTTTCGGGTTTC
4802898 GGGTTTCGGAG-TTC
1 GGGTTTCGG-GTTTC
* * *
4802912 GAGTATTCCGGTTTA
1 GGGT-TTCGGGTTTC
*
4802927 GGG-TTCGGGTGTC
1 GGGTTTCGGGTTTC
* *
4802940 GGTTTTCCGGGGTTC
1 GGGTTT-CGGGTTTC
4802955 GGCGTTTCGGGTTTC
1 GG-GTTTCGGGTTTC
4802970 GGAGTTTCGGCAGGGTTTAC
1 GG-GTTT---C-GGGTTT-C
* *
4802990 GGGTTCCGGGTTGC
1 GGGTTTCGGGTTTC
*
4803004 GTGGTATC-GGTTTCC
1 G-GGTTTCGGGTTT-C
4803019 GGAGTTTCGGGTTTTC
1 GG-GTTTCGGG-TTTC
4803035 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803049 AGGGTTTCGGGTTTC
1 -GGGTTTCGGGTTTC
* *
4803064 GTGTGTC-GGTTTC
1 GGGTTTCGGGTTTC
*
4803077 GGGTTTCGGGCGTTC
1 GGGTTTCGGG-TTTC
*
4803092 -GGTTTCGGGTTGC
1 GGGTTTCGGGTTTC
4803105 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4803118 -GGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4803130 GGGTTTCAGGAGTTTC
1 GGGTTTC-GG-GTTTC
4803146 GGGTTTCGGGATTTTC
1 GGGTTTCGGG--TTTC
4803162 GGGTTTTC-GGTTTC
1 GGG-TTTCGGGTTTC
4803176 GGGTTTTCGGGTTTC
1 GGG-TTTCGGGTTTC
4803191 GGGTTTTCGGGTTTC
1 GGG-TTTCGGGTTTC
4803206 GGGTAATTCGGGTTATGC
1 GGGT--TTCGGGTT-T-C
4803224 GGGATCTTTCGTGG-TTC
1 GGG---TTTCG-GGTTTC
*
4803241 GGAGTGTC-GG-TTC
1 GG-GTTTCGGGTTTC
*
4803254 GAGTTTTC-GGTTTC
1 G-GGTTTCGGGTTTC
4803268 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
4803283 AGGGTTTCGGG-TTC
1 -GGGTTTCGGGTTTC
*
4803297 GAGGTTGCCGGGTTTC
1 G-GGTT-TCGGGTTTC
4803313 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803327 GGGTTTCGGGTTATC
1 GGGTTTCGGGTT-TC
4803342 -GGTTTCGGGTATATC
1 GGGTTTCGGGT-T-TC
* *
4803357 GGGTATTACGGGGATGC
1 GGGT-TT-C-GGGTTTC
4803374 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803388 GGGTTTCTCGGG-TTC
1 GGG-TT-TCGGGTTTC
*
4803403 GGGTTTCGGAGTTGC
1 GGGTTTCGG-GTTTC
* *
4803418 GGGTGTCGGAGGTTC
1 GGGTTTCGG-GTTTC
4803433 GGGCTATTCGGGTTCTC
1 GGG-T-TTCGGGTT-TC
4803450 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4803464 GGTATTTCGGGTTTC
1 GG-GTTTCGGGTTTC
4803479 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4803492 GGG-TTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4803505 GGGGTATCGGGGTTTC
1 -GGGTTTC-GGGTTTC
*
4803521 GGGTTTACGGGATGATC
1 GGGTTT-CGGG-T-TTC
4803538 -GGTTTCGGGTTATC
1 GGGTTTCGGGTT-TC
*
4803552 GGGTTTC-GG-TAC
1 GGGTTTCGGGTTTC
4803564 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4803578 GCGGAAATTTCGGGTTGC
1 G-GG---TTTCGGGTTTC
4803596 AGGGTTTC-GGTTTC
1 -GGGTTTCGGGTTTC
4803610 GGGTTTC-GGTATTC
1 GGGTTTCGGGT-TTC
4803624 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803638 GGGTTTCGGAG-TTC
1 GGGTTTCGG-GTTTC
4803652 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4803666 GGGTTTCGGGTGTC
1 GGGTTTCGGGTTTC
4803680 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803694 TGGGTATTCGGG-TT-
1 -GGGT-TTCGGGTTTC
*
4803708 AGGTTTCGGGTTTTTCCC
1 GGGTTTCGGG--TTT--C
*
4803726 GGGGTTTCGGTATTTC
1 -GGGTTTCGG-GTTTC
4803742 GGGTTTCCCGGGTTATC
1 GGGTTT--CGGGTT-TC
4803759 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803773 AGGGATATTCGGG-TTC
1 -GGG-T-TTCGGGTTTC
*
4803789 TGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4803803 GGGGGTTTCAGGGTTTC
1 --GGGTTTC-GGGTTTC
4803820 GGGGTATTCGGGTTCTC
1 -GGGT-TTCGGGTT-TC
*
4803837 GAGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4803851 -GGTTTCGGGGTTC
1 GGGTTTCGGGTTTC
4803864 -GGTTTGCGGGTTTC
1 GGGTTT-CGGGTTTC
4803878 GGGTTTCTGGGATTTC
1 GGGTTTC-GGG-TTTC
4803894 GGGTTCTCGGGTTTC
1 GGGTT-TCGGGTTTC
* *
4803909 GTGTTTGCCGGTTTC
1 GGGTTT-CGGGTTTC
4803924 -GG-TTCGGGTTTAC
1 GGGTTTCGGGTTT-C
4803937 GGGTTATACGGGTTTC
1 GGGTT-T-CGGGTTTC
4803953 -GGTTTCGGGATTTC
1 GGGTTTCGGG-TTTC
4803967 GGGTTTCAGGGTTATC
1 GGGTTTC-GGGTT-TC
4803983 AGGGTAAATCTCAGGGATTATC
1 -GGGT---T-TC-GGG-TT-TC
4804005 GGGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4804018 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
* *
4804032 ACGGTTGCGGGTTTC
1 -GGGTTTCGGGTTTC
4804047 -GGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4804060 ---TCTCGGGTTTC
1 GGGTTTCGGGTTTC
4804071 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4804085 GGGTGTCGGGTTCTC
1 GGGTTTCGGGTT-TC
4804100 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4804114 GGGATTTCGGGTATTC
1 GGG-TTTCGGGT-TTC
*
4804130 GGGTTACGGGTTTTC
1 GGGTTTCGGG-TTTC
*
4804145 GGGATTTCGGGTTAC
1 GGG-TTTCGGGTTTC
4804160 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
*
4804175 GGGTTTCGGGATTC
1 GGGTTTCGGGTTTC
*
4804189 GGGTTTCGAGGTGTGC
1 GGGTTTCG-GGT-TTC
4804205 GGGGTTTCGGGTTTC
1 -GGGTTTCGGGTTTC
* *
4804220 GGGTTTCGAG-CT-
1 GGGTTTCGGGTTTC
*
4804232 GCGTTTCGAGGTTTC
1 GGGTTTCG-GGTTTC
4804247 GCGGTTTCGGGTTTTC
1 G-GGTTTCGGG-TTTC
4804263 GGG-TTCAGGGTTTC
1 GGGTTTC-GGGTTTC
*
4804277 GGGCTATCGGGTAGTTC
1 GGG-TTTCGGGT--TTC
4804294 GGAG-TT-GGGTTTC
1 GG-GTTTCGGGTTTC
4804307 -GG-TTCGGGTTTC
1 GGGTTTCGGGTTTC
4804319 GGGTTTCGGGTTTAC
1 GGGTTTCGGGTTT-C
4804334 AGGGTTTCGAGGTTTTC
1 -GGGTTTCG-GG-TTTC
*
4804351 CGG-TTC-GG-TTC
1 GGGTTTCGGGTTTC
**
4804362 GGGGTGGCGGGTTTC
1 -GGGTTTCGGGTTTC
*
4804377 GGGTTCGCGGGTTTC
1 GGGTT-TCGGGTTTC
* *
4804392 -GGTTTCCGGTTTA
1 GGGTTTCGGGTTTC
*
4804405 GGGTATTCGGGTTGC
1 GGGT-TTCGGGTTTC
4804420 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
* *
4804433 GTGTTTCGGGTTGC
1 GGGTTTCGGGTTTC
4804447 GGGTTTCGGGGTTTC
1 GGGTTTC-GGGTTTC
4804462 GGGTTTCGGGTTT-
1 GGGTTTCGGGTTTC
4804475 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4804489 GGGTTCGGTCGGGTCTTC
1 GGGTT---TCGGGT-TTC
4804507 GGGTTTC-GG-TTC
1 GGGTTTCGGGTTTC
4804519 GGGTTTTCTGGGTTTC
1 GGG-TTTC-GGGTTTC
4804535 GGGTATTCGGGTTTC
1 GGGT-TTCGGGTTTC
*
4804550 GGGGTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4804564 GGGTTACGGGTTTC
1 GGGTTTCGGGTTTC
4804578 GGGGTATTCGGGTTTTC
1 -GGGT-TTCGGG-TTTC
4804595 GGGTATTCGGGTTTCC
1 GGGT-TTCGGGTTT-C
*
4804611 GGGTTTCGGATTTCC
1 GGGTTTCGGGTTT-C
*
4804626 GGGTTGCGGAGTTATC
1 GGGTTTCGG-GTT-TC
4804642 -GG-TTCGGGTTTTC
1 GGGTTTCGGG-TTTC
*
4804655 GGTTTTATTCGGGTTTC
1 GG--GT-TTCGGGTTTC
*
4804672 GGGTTATCGGGATGTC
1 GGGTT-TCGGG-TTTC
*
4804688 GGGTTTCGGGTATC
1 GGGTTTCGGGTTTC
*
4804702 GGTATTTCGGGTTTTC
1 GG-GTTTCGGG-TTTC
4804718 GGG-TTCGCGGTTCTC
1 GGGTTTCG-GGTT-TC
4804733 GGGTTTCGAGG-TTC
1 GGGTTTCG-GGTTTC
4804747 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4804761 GGGATGTCGGGTTTC
1 GGG-TTTCGGGTTTC
4804776 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4804790 GGGTATCGGAGTTTAC
1 GGGTTTCGG-GTTT-C
*
4804806 GGTTTATCGGGTTTAC
1 GGGTT-TCGGGTTT-C
4804822 GGG-TTCGGGTTTC
1 GGGTTTCGGGTTTC
4804835 --G-TTCGGGTTTC
1 GGGTTTCGGGTTTC
4804846 GGG-TTC-GGTTTC
1 GGGTTTCGGGTTTC
4804858 GGGGTTTTC-GGTTTC
1 -GGG-TTTCGGGTTTC
4804873 -GGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4804886 GGGTTTC-GG-TTC
1 GGGTTTCGGGTTTC
4804898 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4804911 GGGTTTC-GG-TTC
1 GGGTTTCGGGTTTC
*
4804923 AGG-TTCGGGTTTC
1 GGGTTTCGGGTTTC
4804936 GGGTTTAC-GGTTTC
1 GGGTTT-CGGGTTTC
4804950 GGGGTGTTCGGGTTTTC
1 -GGGT-TTCGGG-TTTC
*
4804967 GGGTTTCGGGATTCC
1 GGGTTTCGGG-TTTC
*
4804982 GGGATTTCGGGGTT-
1 GGG-TTTCGGGTTTC
4804996 GCGGTTTCGGGGTTTC
1 G-GGTTTC-GGGTTTC
4805012 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4805026 AGGG-TTCGAGGTTTC
1 -GGGTTTCG-GGTTTC
4805041 -GGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4805053 GGGTGATTCGCGGTTTCC
1 GGGT--TTCG-GGTTT-C
4805071 GGGTTTCAGGGTTTC
1 GGGTTTC-GGGTTTC
4805086 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4805100 GGAG-TTCGGGGTATTC
1 GG-GTTTC-GGGT-TTC
4805116 GGGTTTTCGGAGTTTC
1 GGG-TTTCGG-GTTTC
4805132 GGGTTTCGGAGTATTC
1 GGGTTTCGG-GT-TTC
4805148 GGGATCTTGCGGG-TTC
1 GGG-T-TT-CGGGTTTC
4805164 -GGTTTCGGGGGTTTC
1 GGGTTTC--GGGTTTC
4805179 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4805193 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4805207 --GTTTCGGGGTTC
1 GGGTTTCGGGTTTC
*
4805219 GGGTATTCGGGTTCGCC
1 GGGT-TTCGGGTT--TC
4805236 GGGGGGTTTGCGGGTTT-
1 ---GGGTTT-CGGGTTTC
4805253 -GGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4805265 --GTTTGCGGGTTTC
1 GGGTTT-CGGGTTTC
4805278 -GGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4805290 -GGTTTCAGGAGTTTC
1 GGGTTTC-GG-GTTTC
4805305 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4805318 GGGTTTTCAGGGCATTTC
1 GGG-TTTC-GGG--TTTC
4805336 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4805350 GGAGTTTC-GGTTTC
1 GG-GTTTCGGGTTTC
4805364 AGGG-TTCAGGAGTTTAC
1 -GGGTTTC-GG-GTTT-C
*
4805381 AGGGTTTCGGGTTGC
1 -GGGTTTCGGGTTTC
**
4805396 AGGGTTGTCGGGGTGGC
1 -GGGTT-TC-GGGTTTC
4805413 GGGTCTTCGGGTTTC
1 GGGT-TTCGGGTTTC
4805428 GGGTTTTCGGGTTTC
1 GGG-TTTCGGGTTTC
*
4805443 GGGGTATTC---TACTC
1 -GGGT-TTCGGGT-TTC
4805457 GGGTTATCGGGTTTC
1 GGGTT-TCGGGTTTC
4805472 -GGTTTCAGGGTATTC
1 GGGTTTC-GGGT-TTC
4805487 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
*
4805500 GGGTTTCGGGTGTC
1 GGGTTTCGGGTTTC
4805514 GGGTATTCAGGGTTTC
1 GGGT-TTC-GGGTTTC
4805530 GGGTTTCGGGTTTCCTC
1 GGGTTTCGGG-TT--TC
4805547 GGGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4805560 GGGTATTCAGGGTTTC
1 GGGT-TTC-GGGTTTC
4805576 -GGTTTCGGAGTTTC
1 GGGTTTCGG-GTTTC
*
4805590 GGGTGTCGGGTTTC
1 GGGTTTCGGGTTTC
* *
4805604 GGGTTGCGGGTTGC
1 GGGTTTCGGGTTTC
4805618 -GGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4805631 GGG-TTGGGGTTTTC
1 GGGTTTCGGG-TTTC
4805645 GGGTTTCGGGGTTTC
1 GGGTTTC-GGGTTTC
4805660 -GGTTTCCGGGATTTC
1 GGGTTT-CGGG-TTTC
*
4805675 GGG-TTC-GGTTAGC
1 GGGTTTCGGGTT-TC
4805688 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
*
4805703 GGGGTTTCACGG-TTC
1 -GGGTTTC-GGGTTTC
4805718 GAGGATTTCGGGTATATC
1 G-GG-TTTCGGGT-T-TC
4805736 GGGTTTC-GGTTTAC
1 GGGTTTCGGGTTT-C
*
4805750 GGGTTACGGGTTCTTC
1 GGGTTTCGGG-T-TTC
4805766 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
*
4805781 GGGTTTCGGGTGTC
1 GGGTTTCGGGTTTC
4805795 GGGTCTTTTCGGGTATTC
1 GGG---TTTCGGGT-TTC
4805813 GGGTTT-GGGTTTC
1 GGGTTTCGGGTTTC
*
4805826 AGGGTTTCGGGTGTC
1 -GGGTTTCGGGTTTC
*
4805841 GGGTTT-GGAGATTC
1 GGGTTTCGG-GTTTC
4805855 GGGTTTCGGGTTT-
1 GGGTTTCGGGTTTC
4805868 GCGGTTTACGGGTATTC
1 G-GGTTT-CGGGT-TTC
4805885 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
4805900 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
*
4805915 GGGTTCCGGGTCATTC
1 GGGTTTCGGGT--TTC
4805931 GGAGTTTCGGAAGTTTC
1 GG-GTTTCGG--GTTTC
4805948 GGG--TCGGGTTTC
1 GGGTTTCGGGTTTC
4805960 GGAGTTTTCGGAGTTTC
1 GG-G-TTTCGG-GTTTC
4805977 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4805991 GGCGTTTCGGGTTTA
1 GG-GTTTCGGGTTTC
* *
4806006 GGGTGTCGGTTTTATC
1 GGGTTTCGG-GTT-TC
*
4806022 GTGTTTCGGAGTTATC
1 GGGTTTCGG-GTT-TC
*
4806038 AGGCGTTTCTTCGGTTTC
1 -GG-GTTTC--GGGTTTC
4806056 GGGTAATCTCGGGTTTCC
1 GGGT--T-TCGGGTTT-C
*
4806074 GGCGGTTCGGGTTTC
1 GG-GTTTCGGGTTTC
4806089 GGGTTTCGGGTTTTCGC
1 GGGTTTCGGG-TTT--C
4806106 GGGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
*
4806119 AGGG-TTCGGG-GTC
1 -GGGTTTCGGGTTTC
4806132 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
* *
4806146 GGGTTTCGGGGTGC
1 GGGTTTCGGGTTTC
4806160 -GGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806173 -GGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806186 GGAGTTTC-GGTTTC
1 GG-GTTTCGGGTTTC
4806200 GGGTTTCGGGTATTC
1 GGGTTTCGGGT-TTC
4806215 GAGGTTTCGGGTAACTTAC
1 G-GGTTTCGGGT---TT-C
*
4806234 GGGTTCACGGGTTTCC
1 GGGTT-TCGGGTTT-C
*
4806250 AGGTTTCAAGGGTTTC
1 GGGTTTC--GGGTTTC
4806266 GGGTTTCGGGGGTTTTC
1 GGGTTTC--GGG-TTTC
4806283 GAGGTATTTCGGG-TTC
1 G-GG--TTTCGGGTTTC
*
4806299 GGGGTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806313 GGGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4806326 GGGTTATC---TTTC
1 GGGTT-TCGGGTTTC
4806338 AGGG-TTCGGGATTTATC
1 -GGGTTTCGGG--TT-TC
**
4806355 GGGTTTCGAGGTGGC
1 GGGTTTCG-GGTTTC
4806370 -GG-TTCGGGTTTC
1 GGGTTTCGGGTTTC
4806382 GGAGTTTTCGGCGTCTTC
1 GG-G-TTTCGG-GT-TTC
4806400 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806414 GGCGTTTCGGGGTTTC
1 GG-GTTTC-GGGTTTC
4806430 GGGTTTACGGGTTTC
1 GGGTTT-CGGGTTTC
4806445 GGGTTTCGGAG-TTC
1 GGGTTTCGG-GTTTC
*
4806459 AGGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4806472 GGGTTT-GCGG-TTC
1 GGGTTTCG-GGTTTC
4806485 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4806499 GGGGTTCCGGGTTTAC
1 -GGGTTTCGGGTTT-C
4806515 GGGTTTCGGGTATTTC
1 GGGTTTCGGG--TTTC
4806531 -GGTTTACGGGTTTTC
1 GGGTTT-CGGG-TTTC
4806546 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806560 GGGTTTCGGGATTTC
1 GGGTTTCGGG-TTTC
*
4806575 GGGATTGCGGGTTTC
1 GGG-TTTCGGGTTTC
4806590 GGGTTTCAGGGTTTC
1 GGGTTTC-GGGTTTC
4806605 GGGTTTCAGGGTTTC
1 GGGTTTC-GGGTTTC
*
4806620 GAGGTATATC-GCTTTC
1 G-GGT-T-TCGGGTTTC
4806636 GGG-TTCGGGTATATCC
1 GGGTTTCGGGT-T-T-C
4806652 GGGTTTCGGGGTTTC
1 GGGTTTC-GGGTTTC
* *
4806667 GTGTTTCGGGTTGGC
1 GGGTTTCGGGTT-TC
* *
4806682 GGGTTTAGGGTGTC
1 GGGTTTCGGGTTTC
*
4806696 GGGGTTC-GGTTATC
1 GGGTTTCGGGTT-TC
4806710 -GGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
4806724 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
*
4806739 AGGAGTTTCAGGGTATC
1 -GG-GTTTC-GGGTTTC
4806756 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806770 GGGTTTTCGGGTTTC
1 GGG-TTTCGGGTTTC
4806785 GGGTTTTCGGGTTTC
1 GGG-TTTCGGGTTTC
4806800 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4806814 GGGTTTCGGGTTTGC
1 GGGTTTCGGGTTT-C
4806829 GGG-TTC-GGTTTC
1 GGGTTTCGGGTTTC
4806841 GGGTTTCGGGTTT-
1 GGGTTTCGGGTTTC
4806854 GGGATTTC-GGTTTC
1 GGG-TTTCGGGTTTC
4806868 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4806881 GAGGTTTCGGGTTTC
1 G-GGTTTCGGGTTTC
*
4806896 GGAGTTTTCGGGTTCC
1 GG-G-TTTCGGGTTTC
4806912 GGGTATTCGGGTTTC
1 GGGT-TTCGGGTTTC
4806927 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4806941 GGGATTTTCGGGTGTC
1 GGG--TTTCGGGTTTC
4806957 -GGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
4806969 GGGTTTCGCGGGTTTC
1 GGGTTT--CGGGTTTC
4806985 GGG-TTCGGGTTATC
1 GGGTTTCGGGTT-TC
*
4806999 GGG-TTCGGGTTGC
1 GGGTTTCGGGTTTC
4807012 GGGAATTTCCGGGTTTC
1 GGG--TTT-CGGGTTTC
4807029 GGG--TCGGGTTTC
1 GGGTTTCGGGTTTC
4807041 GGGTTATCGGGTTTC
1 GGGTT-TCGGGTTTC
*
4807056 GGGTTTAGGGTTTC
1 GGGTTTCGGGTTTC
*
4807070 -GG-TTCGGGGTTC
1 GGGTTTCGGGTTTC
4807082 GGGTTTCGGGGTTTC
1 GGGTTTC-GGGTTTC
4807097 -GGTTT--GGTTTC
1 GGGTTTCGGGTTTC
4807108 GGGTATTCGGG-TTC
1 GGGT-TTCGGGTTTC
4807122 GGGTTTTACGGGTTTC
1 GGG-TTT-CGGGTTTC
* *
4807138 GGG-GTCGGGTGTC
1 GGGTTTCGGGTTTC
4807151 GGCGTTTCGGGTTTC
1 GG-GTTTCGGGTTTC
4807166 -GGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
*
4807178 -GGTATTCGGGTGTC
1 GGGT-TTCGGGTTTC
4807192 GGGTTTCGGGTTGTTC
1 GGGTTTCGGG-T-TTC
4807208 GGGTTTC-GGTTTC
1 GGGTTTCGGGTTTC
**
4807221 GGGTTTTCGGGAGTC
1 GGG-TTTCGGGTTTC
*
4807236 GGGTATCGGGTTATC
1 GGGTTTCGGGTT-TC
*
4807251 GGGTTACGGGTTTC
1 GGGTTTCGGGTTTC
*
4807265 AGGG-TTCGGGTTTA
1 -GGGTTTCGGGTTTC
* *
4807279 GGGTGTCGGGTTGC
1 GGGTTTCGGGTTTC
*
4807293 CGGTATTCCGGGTTTC
1 GGGT-TT-CGGGTTTC
*
4807309 GGG-TTCAGGTTTTCC
1 GGGTTTC-GGGTTT-C
4807324 GGGTTTCGGG-TTC
1 GGGTTTCGGGTTTC
4807337 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4807351 GGAG-TTCGGAGTTTC
1 GG-GTTTCGG-GTTTC
*
4807366 AAGGTTATCGGG-TTC
1 -GGGTT-TCGGGTTTC
4807381 GGG-TTCGGGTTTTC
1 GGGTTTCGGG-TTTC
4807395 GGGTTTCGGGATTTC
1 GGGTTTCGGG-TTTC
4807410 -GGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4807423 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4807437 GGG-TTCGGGTTTC
1 GGGTTTCGGGTTTC
*
4807450 GGGTTTCGAGGTTGC
1 GGGTTTCG-GGTTTC
4807465 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4807479 GGGTTTTCGGGTTATC
1 GGG-TTTCGGGTT-TC
4807495 GGGGTTTTCGGGGTTTC
1 -GGG-TTTC-GGGTTTC
4807512 GAGAGTTTCGGGTTTC
1 G-G-GTTTCGGGTTTC
**
4807528 -GGTTGGGGGTTTC
1 GGGTTTCGGGTTTC
4807541 -GGTTTCGGGTTATC
1 GGGTTTCGGGTT-TC
4807555 GGGTTTCCGGGTTTTC
1 GGGTTT-CGGG-TTTC
4807571 --G-TTCGGAG-TTC
1 GGGTTTCGG-GTTTC
4807582 GGGATTTCCGAGGTTTC
1 GGG-TTT-CG-GGTTTC
4807599 GAGGTTTCGGGGTTTC
1 G-GGTTTC-GGGTTTC
4807615 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
** *
4807629 GGGTGGC-GGTTGC
1 GGGTTTCGGGTTTC
4807642 GGG-TTCGGGTTTCC
1 GGGTTTCGGGTTT-C
* *
4807656 GGCTTTTCGGGTTTAA
1 GG-GTTTCGGGTTT-C
4807672 GGAGTTTCGGGTTTCC
1 GG-GTTTCGGGTTT-C
4807688 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4807702 GGGTTTCGGGTTTC
1 GGGTTTCGGGTTTC
4807716 GGGTTTCGGGTTTCC
1 GGGTTTCGGGTTT-C
4807731 GGAGTTTCGG
1 GG-GTTTCGG
4807741 TTCTCCTCTC
Statistics
Matches: 5622, Mismatches: 375, Indels: 1440
0.76 0.05 0.19
Matches are distributed among these distances:
10 1 0.00
11 70 0.01
12 258 0.05
13 806 0.14
14 1601 0.28
15 1366 0.24
16 847 0.15
17 415 0.07
18 158 0.03
19 57 0.01
20 27 0.00
21 11 0.00
22 5 0.00
ACGTcount: A:0.05, C:0.13, G:0.43, T:0.39
Consensus pattern (14 bp):
GGGTTTCGGGTTTC
Found at i:4802385 original size:78 final size:75
Alignment explanation
Indices: 4802254--4807470 Score: 609
Period size: 76 Copynumber: 68.7 Consensus size: 75
4802244 TCGGGGTTTT
* * *
4802254 CGGGTTTCGGGTTTCGAAGG-GTCGGGTATTCGGGTTATCCGAGGTTTCGGGTTTCGGG-TTTCG
1 CGGGTTTCGGGTTTCG--GGTTTC-GGT-TTCAGGTT-TCCG-GGGTTCGGGTTTCGGGTTTTCG
4802317 CGGGTTATCGGTTTCGG
60 CGGGTT-TCGGTTTCGG
4802334 CCGGGTTTCGCGGGTTTC-GGTTATCGGTTTCAGGTTTCCGGGGTTCGGGTTTCGGG-TTT--CG
1 -CGGGTTT--CGGGTTTCGGGTT-TCGGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCG
4802395 GGTTTCGGGTTTCGGAGG
62 GGTTTC-GGTTTC---GG
* *
4802413 TCGGGTTTCGGGTTTCGGGTTTCGGGTTCGAGGTTTCTCGGGTTTCGGGTTTACGAGGTTTTCG-
1 -CGGGTTTCGGGTTTCGGGTTTCGGTTTC-AGGTTTC-CGGGGTTCGGGTTT-CG-GGTTTTCGC
* *
4802477 GGATTTCGGTTTCAG
61 GGGTTTCGGTTTCGG
* * *
4802492 CGAGTTTCGGGTTTCGGGTTTCGGGTTACGGGTTGT-C-GGGTTC-GGTTTCGGGTTTTCTGCGG
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTTCAGGTT-TCCGGGGTTCGGGTTTCGGGTTTTC-GCGG
4802554 GTTATCGGGGTTT---
63 GTT-TC--GGTTTCGG
* * * * *
4802567 CGGGTTTCGGG-TGCGGGTTATCGGGTTCGGGTTTTC-GGTTTCGGGGTTTCGGG-TTTC-CGGG
1 CGGGTTTCGGGTTTCGGGTT-TCGGTTTCAGGTTTCCGGGGTTC-GGGTTTCGGGTTTTCGCGGG
*
4802628 TTTTCGGGTAT--G
64 -TTTC-GGTTTCGG
* *
4802640 CGCGGTTT-GCGG-TTC-GG----GGTTTC-GGTTTCCGGGTTTCGGGTTTCGGG-TTTCAC-GG
1 CG-GGTTTCG-GGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGG
4802695 TTTCGGTTT---
64 TTTCGGTTTCGG
* *
4802704 CGGGTTTCGGGTTTCGGGTTTCGGGTTTCAGGGTTCTTC-GGGTGTCGGGTTTCAGGGGTTT--C
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTTCA-GGTT-TCCGGGGT-TCGGGTTTC-GGGTTTTCGC
*
4802766 GGGTTTCGGGTT--G
61 GGGTTTCGGTTTCGG
* * * *
4802779 CGGGTTTCGAAGTTTCGGGTATCCAGGGTTTCGGGATTT-CGGGTTTCGGG--TCGGGTTATATT
1 CGGGTTTCG-GGTTTCGGGT-TTC--GGTTTCAGG-TTTCCGGGGTTCGGGTTTCGGG-T-T-TT
**
4802841 C-CGGG-TTCGGGATCGGG
58 CGCGGGTTTCGGTTTC-GG
* * *
4802858 TTTCGGGTTTCGGGTATTCCGGG-TTCGGGTTTCAGGTTT-CGGGTTTCGGAG-TTCGAGTATTC
1 ---CGGGTTTCGGGT-TT-CGGGTTTC-GGTTTCAGGTTTCCGGGGTTCGG-GTTTCGGGTTTTC
* *
4802920 -C-GGTTTAGGGTTCGGGTG
59 GCGGGTTTCGGTTTC--G-G
* * * * *
4802938 TCGGTTTTCCGGGGTTCGGCGTTTCGGGTTTCGGAGTTTCGGCAGGGTTTACGGGTTCCGGG--T
1 -CGGGTTT-CGGGTTTCGG-GTTTC-GGTTTCAG-GTTTC--C-GGGGTT-CGGGTTTCGGGTTT
*
4803001 T-GCGTGGTATCGGTTTC--
57 TCGCG-GGTTTCGGTTTCGG
* * *
4803018 CGGAGTTTCGGGTTTTCGGGTTTCGGGTTTCAGGGTTT-CGGGTTTCGTGTGTC-GG-TTT--CG
1 CGG-GTTTCGGG-TTTCGGGTTTC-GGTTTCA-GGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCG
* *
4803078 GGTTTCGG--GCGTT
62 GGTTTCGGTTTCG-G
* *
4803091 C-GGTTTCGGGTTGCGGGTTTCGGGTTC-GGTTT-C-GGGTTCGGGTTTCAGGAG-TTT--CGGG
1 CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTCGGGTTTC-GG-GTTTTCGCGGG
4803149 TTTCGGGATTTTC-G
64 TTTC-GG--TTTCGG
* * * * *
4803163 -GGTTTTC-GGTTTCGGGTTTTCGGGTTTCGGGTTTTCGGGTTTCGGGTAATTCGGGTTAT-GCG
1 CGGGTTTCGGGTTTCGGG-TTTC-GGTTTCAGGTTTCCGGGGTTCGGGT--TTCGGGTTTTCGCG
*
4803225 GGATCTTTCGTGGTTCGG
62 GG---TTTCG-GTTTCGG
* * * * * *
4803243 AGTGTCGGTTCGAGTTTTC-GGTTTCGGGTTTCGGGTTTCCAGGGTTTCGGG-TTCGAGG-TTGC
1 CG-G--GTTTCG-GGTTTCGGGTTTC-GGTTTCAGGTTTCC-GGGGTTCGGGTTTCG-GGTTTTC
4803305 -CGGGTTTCGGGTTT---
59 GCGGGTTTC-GGTTTCGG
* * * *
4803319 CGGGTTTCGGGTTTCGGGTTATCGGTTTCGGGTATAT-CGGGTATTACGGGGATGCGGG-TTT--
1 CGGGTTTCGGGTTTCGGGTT-TCGGTTTCAGGT-T-TCCGGG-GTT-C-GGGTTTCGGGTTTTCG
*
4803380 CGGGTTTCGGGTTTC-T
60 CGGGTTTC-GGTTTCGG
* * *
4803396 CGGG-TTCGGGTTTCGGAGTTGCGGGTGTCGGAGG-TT-CGGGCTATTCGGGTTCTCGGG-TTT-
1 CGGGTTTCGGGTTTCGG-GTTTC-GGTTTC--AGGTTTCCGGG--GTTCGGGTT-TCGGGTTTTC
*
4803456 -CGGGTTTCGGTATT--T
59 GCGGGTTTCGGT-TTCGG
* * * *
4803471 CGGGTTTCGGGTTTCGGG-TTCGGGTTCGGGTTT-CGGGGTATCGGGGTTTCGGGTTTACG-GGA
1 CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGT-TC-GGGTTTCGGGTTTTCGCGGG
*
4803533 TGATCGGTTT---
64 T-TTCGGTTTCGG
* * ** *
4803543 CGGGTTATCGGGTTTC-GG-TACGGGTTTCGGGTTTCGCGGAAATTTCGGGTTGCAGGG-TTT--
1 CGGGTT-TCGGGTTTCGGGTTTC-GGTTTCAGGTTTC-CGG--GGTTCGGGTTTC-GGGTTTTCG
4803603 C-GGTTTCGGGTTT---
60 CGGGTTTC-GGTTTCGG
* *
4803616 C-GGTATTCGGGTTTCGGGTTTCGGGTTTC-GGAGTT-CGGGTTTCGGGTTTCGGG-TTT--CGG
1 CGGGT-TTCGGGTTTCGGGTTTC-GGTTTCAGG-TTTCCGGGGTTCGGGTTTCGGGTTTTCGCGG
*
4803675 GTGTCGGGTTT---
63 GTTTC-GGTTTCGG
* * *
4803686 CGGGTTTCTGGGTATTCGGG-TTAGGTTTCGGGTTTTTCCCGGGGTTTCGGTATTTCGGG-TTTC
1 CGGGTTTC-GGGT-TTCGGGTTTCGGTTTCAGG--TTT-CCGGGG-TTCGG-GTTTCGGGTTTTC
*
4803749 CCGGGTTATCGGGTTT---
59 GCGGGTT-TC-GGTTTCGG
* * *
4803765 CGGGTTTCAGGGATATTCGGG-TTCTGGTTTCGGGTTTCGGGGGTTTCAGGGTTTCGGGGTATT-
1 CGGGTTTC-GGG-T-TTCGGGTTTC-GGTTTCAGGTTTCCGGGG-TTC-GGGTTTC-GGGTTTTC
4803828 -CGGGTTCTCGAGTTT---
59 GCGGGTT-TCG-GTTTCGG
* * * *
4803843 CGGGTTTC-GGTTTCGGGGTTCGGTTTGCGGGTTT-CGGGTTTCTGGGATTTCGGG--TTCTCGG
1 CGGGTTTCGGGTTTCGGGTTTCGGTTT-CAGGTTTCCGGGGTTC-GGG-TTTCGGGTTTTCGCGG
4803904 GTTTCGTGTTTGCCGG
63 GTTTCG-GTTT--CGG
* *
4803920 TTTC-GG-TTCGGGTTTACGGGTTATACGGGTTTC-GGTTT-CGGGATTTCGGGTTTCAGGGTTA
1 ---CGGGTTTCGGGTTT-CGGGTT-T-C-GGTTTCAGGTTTCCGGG-GTTCGGGTTTC-GGGTTT
* * **
4803981 TC-AGGGTAAATCTCAGGGATT-AT
57 TCGCGGGT---T-TC--GGTTTCGG
* * *
4804004 CGGGTTTC-GGTTTCGGGTTTCGGGTTTCACGG-TTGCGGGTTTC-GGTTTCGGGTTTCTCTCGG
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTTCA-GGTTTCCGGGGTTCGGGTTTCGGGTTT-TCGCGG
4804066 GTTTCGGGTTTCGGG
63 GTTTC-GGTTTC-GG
* * * *
4804081 TTTCGGGTGTCGGGTTCTCGGGTTTCGGGTTTCGGGATTT-CGGGTATTCGGGTTACGGGTTTTC
1 ---CGGGTTTCGGGTT-TCGGGTTTC-GGTTTCAGG-TTTCCGGG-GTTCGGGTTTCGGGTTTTC
* *
4804145 G-GGATTTCGGGTTACGGG
59 GCGGGTTTC-GGTTTC-GG
* * *
4804163 TTTCGGGTTTCCGGGTTTCGGGATTCGGGTTTCGAGGTGTGCGGGGTTTCGGGTTTCGGG-TTTC
1 ---CGGGTTT-CGGGTTTCGGGTTTC-GGTTTC-AGGTTTCCGGGG-TTCGGGTTTCGGGTTTTC
*
4804227 GAGCTGCGTTTCGAGGTTTC-G
59 --GC-GGGTTTC--GGTTTCGG
* *
4804248 C-GGTTTCGGGTTTTCGGG-TTCAGGGTTTCGGGCTAT-CGGGTAGTTCGGAG-TT-GGG-TTTC
1 CGGGTTTCGGG-TTTCGGGTTTC--GGTTTCAGG-TTTCCGGG--GTTCGG-GTTTCGGGTTTTC
4804307 GGTTCGGGTTTCGGGTTT---
59 -G--CGGGTTTC-GGTTTCGG
*
4804325 CGGGTTTACAGGGTTTCGAGGTTTTCCGG-TTC-GG-TT-CGGGGTGGCGGGTTTCGGG--TTCG
1 CGGGTTT-C-GGGTTTCG-GG-TTT-CGGTTTCAGGTTTCCGGGGT-TCGGGTTTCGGGTTTTCG
4804384 CGGGTTTCGGTTTC--
60 CGGGTTTCGGTTTCGG
* * * * * *
4804398 C-GGTTTAGGGTATTCGGGTTGCGGGTTTC-GGGTT-CGTGTTTCGGGTTGCGGG-TTTCG-GGG
1 CGGGTTTCGGGT-TTCGGGTTTC-GGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGG
4804458 TTTCGGGTTTCGGG
64 TTTC-GGTTTC-GG
* * * *
4804472 TTTGGGTTTCGGGTTTCGGG-TTCGG--TCGGGTCTT-CGGGTTTC-GG-TTCGGGTTTTC-TGG
1 --CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGT-TTCCGGGGTTCGGGTTTCGGGTTTTCGCGG
4804530 GTTTCGGGTATTCGGG
63 GTTTC-GGT-TTC-GG
* * * *
4804546 TTTCGGGGTTCGGGTTTCGGGTTACGGGTTTCGGGGTATT-CGGGTTTTCGGGTATTCGGG-TTT
1 ---CGGGTTTCGGGTTTCGGGTTTC-GGTTTC-AGGT-TTCCGGG-GTTCGGGT-TTCGGGTTTT
4804609 C-CGGGTTTCGGATTTC--
58 CGCGGGTTTCGG-TTTCGG
* * * * *
4804625 CGGGTTGCGGAGTTATC-GG-TTCGGGTTTTC-GGTTTTATTCGGGTTTCGGGTTATCGGGATGT
1 CGGGTTTCGG-GTT-TCGGGTTTC-GG-TTTCAGG--TT-TCCGGGGTTCGGGTT-TCGGGTTTT
*
4804687 --CGGGTTTCGGGTATC-G
58 CGCGGGTTTC-GGTTTCGG
** * * *
4804703 -GTATTTCGGGTTTTCGGGTTCGCGGTTCTCGGGTTT-CGAGGTTCGGGTTTCGGG-TTTCG-GG
1 CGGGTTTCGGG-TTTCGGGTT-TCGGTT-TCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGG
* *
4804764 ATGTCGGGTTTCGGG
63 GTTTC-GGTTTC-GG
* * * *
4804779 TTTCGGGTTTCGGGTATCGGAGTTTACGGTTTATCGGGTTTAC-GGGTTCGGGTTTCGTTCGGGT
1 ---CGGGTTTCGGGTTTCGG-GTTT-CGG-TT-TCAGGTTTCCGGGGTTCGGGTTTCG---GGTT
4804843 TT--CGGG-TTCGGTTTCGG
56 TTCGCGGGTTTCGGTTTCGG
* *
4804860 -GGTTTTC-GGTTTC-GGTTTCGGGTTTCGGGTTT-C--GGTTCGGGTTTCGGG--TT--CGGGT
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGGT
4804915 TTCGG-TTCAGG
65 TTCGGTTTC-GG
* * * * *
4804926 TTCGGGTTTCGGGTTTAC-GGTTTCGGGGTGTTCGGGTTTTCGGGTTTCGGGATTCCGGGATTTC
1 --CGGGTTTCGGGTTT-CGGGTTTC--GGT-TTCAGGTTTCCGGGGTTCGGG-TTTCGGGTTTTC
*
4804990 G-GGGTTGCGGTTTC-G
59 GCGGGTTTCGGTTTCGG
* * *
4805005 -GGGTTTCGGGTTTCGGGTTTCAGGGTTCGAGGTTT-C-GGTTTC-GGTTTCGGGTGATTCGC-G
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTTC-AGGTTTCCGGGGTTCGGGTTTCGGGT-TTTCGCGG
4805065 GTTTCCGGGTTTC--
63 GTTT-C-GGTTTCGG
* * * *
4805078 AGGGTTTCGGGTTTCGGGTTTCGGAGTTCGGGGTATT-CGGGTTTTCGGAGTTTCGGG-TTTCG-
1 CGGGTTTCGGGTTTCGGGTTTCGG-TTTC-AGGT-TTCCGGG-GTTCGG-GTTTCGGGTTTTCGC
*
4805140 GAGTATTCGGGATCTTGCGG
61 GGGT-TTC-GG-T-TT-CGG
* * *
4805160 -GTTCGGTTTCGGGGGTTTCGGGTTTCGGGTTTCGGGTTT-CGGGTTTC--GTTTCGGG-GTT--
1 CG---GGTTTC--GGGTTTCGGGTTTC-GGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCG
* *
4805218 CGGGTATTCGGGTTCGC
60 CGGGT-TTCGGTTTCGG
*
4805235 CGGG----GGGTTTGCGGGTTT-GGTTTC-GGTTT-C--GTTTGCGGGTTTC-GG-TTT--C-GG
1 CGGGTTTCGGGTTT-CGGGTTTCGGTTTCAGGTTTCCGGGGTT-CGGGTTTCGGGTTTTCGCGGG
*
4805286 TTTCGGTTTCAG
64 TTTCGGTTTCGG
* *** *
4805298 -GAGTTTCGGGTTTCGGG-TTCGGGTTTTCAGG-----GCATTTCGGGTTTCGGG-TTTCG-GAG
1 CGGGTTTCGGGTTTCGGGTTTC-GG-TTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGG
4805354 TTTCGGTTTC--
64 TTTCGGTTTCGG
* ** * *
4805364 AGGGTTCAGGAGTTTACAGGGTTTCGGGTTGCAGGGTTGT-CGGGGTGGCGGGTCTTCGGG-TTT
1 CGGGTTTCGG-GTTT-C-GGGTTTC-GGTTTCA-GGTT-TCCGGGGT-TCGGGT-TTCGGGTTTT
*
4805427 CG-GGTTTTCGGGTTTCGG
58 CGCGGGTTTC-GGTTTCGG
* *
4805445 -GGTATTCTACTCGGGTTATCGGGTTTCGGTTTCAGGGTATT-CGGGTTTCGGG-TTCGGG-TTT
1 CGG--GT-T--TCGGGTT-TCGGGTTTCGGTTTCA-GGT-TTCCGGGGTTCGGGTTTCGGGTTTT
*
4805506 --CGGGTGTCGGGTATTC--
58 CGCGGGTTTC-GGT-TTCGG
* *
4805522 AGGGTTTCGGGTTTCGGGTTTCCTCGGGTTTC-GGTTT-CGGGTATTCAGGGTTTC-GG-TTTCG
1 CGGGTTTCGGGTTTCGGG-TT--TC-GGTTTCAGGTTTCCGGG-GTTC-GGGTTTCGGGTTTTCG
* * *
4805583 -GAGTTTCGG-GT-GT
60 CGGGTTTCGGTTTCGG
* * * *
4805596 CGGGTTTCGGGTTGCGGGTTGCGGTTTCGGGTTT-C-GGGTTGGGGTTTTCGGG-TTTCG-GGGT
1 CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTCGGG-TTTCGGGTTTTCGCGGGT
4805657 TTCGGTTTC--
65 TTCGGTTTCGG
* * * *
4805666 CGGGATTTCGGG-TTC-GGTTAGCGGGTTTCGGGTTTCCGGGGTTTCACGG-TTCGAGGATTT--
1 CGGG-TTTCGGGTTTCGGGTT-TC-GGTTTCAGGTTTCCGGGG-TTC-GGGTTTCG-GGTTTTCG
4805726 CGGGTATATCGGGTTT---
60 CGGGT-T-TC-GGTTTCGG
* * * * *
4805742 C-GGTTTACGGGTTACGGGTTCTTCGGGTTTCGGGTTTCCGGGTTTCGGGTGTCGGGTCTTT-TC
1 CGGGTTT-CGGGTTTCGGG-T-TTC-GGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGT-TTTCGC
*
4805805 GGGTATTCGGGTTTGGG
61 GGGT-TTC-GGTTTCGG
* * * * * *
4805822 TTTCAGGGTTTCGGGTGTCGGGTTTGGAGATTCGGGTTT-C-GGGTTTGCGGTTTACGGGTATT-
1 ---C-GGGTTTCGGGTTTCGGGTTTCG-GTTTCAGGTTTCCGGGGTTCG-GGTTT-CGGGTTTTC
4805884 -CGGGTTTCGGGTTTCCGGG
59 GCGGGTTTC-GGTTT-C-GG
* *
4805903 TTTCGGGTTTCCGGGTTCCGGGTCATTCGGAGTTTCGGAAGTTT-C-GGG-TCGGGTTTCGGAGT
1 ---CGGGTTT-CGGGTTTCGGGT--TTC-G-GTTTC--AGGTTTCCGGGGTTCGGGTTTCGG-GT
*
4805965 TTTCG-GAGTTTCGGGTTT---
55 TTTCGCGGGTTTC-GGTTTCGG
* * * * *
4805983 CGGGTTTCGGCGTTTCGGGTTTAGGGTGTC-GGTTTTATCGTGTTTCGGAGTTATCAGGCG-TTT
1 CGGGTTTCGG-GTTTCGGGTTT-CGGTTTCAGG-TTT-CCGGGGTTCGG-GTT-TC-GG-GTTTT
* * *
4806046 CTTC-GGTTTCGGGTAATC-T
58 C-GCGGGTTTC-GGT-TTCGG
* * *
4806065 CGGGTTTCCGGCGGTTCGGGTTTCGGGTTTCGGGTTTTCGCGGGTTTC-GGTTTCAGGG--TTCG
1 CGGGTTT-CGG-GTTTCGGGTTTC-GGTTTCAGG-TTTC-CGGGGTTCGGGTTTC-GGGTTTTCG
4806127 -GGG--TCGGGTTT---
60 CGGGTTTC-GGTTTCGG
* * * *
4806138 CGGGTTTCGGGTTTCGGGGTGCGGTTTCGGGTTT-C-GGTTTCGGGTTTCGGAG-TTT--C-GGT
1 CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTCGGGTTTCGG-GTTTTCGCGGGT
4806197 TTCGGGTTT---
65 TTC-GGTTTCGG
* * *
4806206 CGGGTATTCGAGGTTTCGGGTAACTTACGGGTTCACGGGTTTCCAGGTTTCAAGGGTTTCGGG-T
1 CGGGT-TTCG-GGTTTCGGGT---TT-CGGTTTCA--GGTTTCCGGGGTTC--GGGTTTCGGGTT
*
4806270 TTCGGGGGTTTTCGAGGTATTTCGGG
56 TTCGCGGG-TTTC--GG--TTTC-GG
* * *
4806296 TTCGGGGTTCGGGTTTCGGGTTTCGGTTTCGGGTTATCTTTCAGGGTTCGGGATTTATCGGG-TT
1 --CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTT-TC---CGGGGTTCGGG--TT-TCGGGTTT
* **
4806360 TCG-AGGTGGCGG-TT---
57 TCGCGGGTTTCGGTTTCGG
* *
4806374 CGGGTTTCGGAGTTTTCGGCGTCTTCGGGTTTCGGGTTT-CGGCGTTTCGGGGTTTCGGG-TTT-
1 CGGGTTTCGG-G-TTTCGG-GT-TTC-GGTTTCAGGTTTCCGG-GGTTC-GGGTTTCGGGTTTTC
*
4806436 ACGGGTTTCGGGTTTC-G
59 GCGGGTTTC-GGTTTCGG
* * * *
4806453 -GAG-TTCAGGTTTC-GGTTTCGGGTTTGC-GG-TT-CGGGTTTCGGGTTTCGGG-GTTC-CGGG
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTT-CAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGG
4806510 TTTACGGGTTTCGG
64 TTT-C-GGTTTCGG
** * * *
4806524 -GTATTTC-GGTTTACGGGTTTTCGGGTTTCGGGTTT-CGGGTTTCGGGATTTCGGG-ATT-GCG
1 CGGGTTTCGGGTTT-CGGG-TTTC-GGTTTCAGGTTTCCGGGGTTCGGG-TTTCGGGTTTTCGCG
4806584 GGTTTCGGGTTTC--
62 GGTTTC-GGTTTCGG
* *
4806597 AGGGTTTCGGGTTTCAGGGTTTCGAGGTATATC-GCTTT-C-GGGTTCGGGTATATCCGGG-TTT
1 CGGGTTTCGGGTTTC-GGGTTTC--GGT-T-TCAGGTTTCCGGGGTTCGGGT-T-T-CGGGTTTT
4806658 CG-GGGTTTCGTGTTTCGGGTTGG
58 CGCGGGTTTCG-GTTTC-----GG
* * * *
4806681 CGGGTTTAGGGTGTCGGGGTTCGGTTATC-GGTTT-CGGGTTTCCGGGTTTCGGG-TTTC-CAGG
1 CGGGTTTCGGGTTTCGGGTTTCGGTT-TCAGGTTTCCGGGGTT-CGGGTTTCGGGTTTTCGC-GG
*
4806742 AGTTTCAGGGTAT---
63 -GTTTC--GGTTTCGG
* * *
4806755 CGGGTTTCGGGTTTCGGGTTTTCGGGTTTCGGGTTTTCGGGTTTCGGGTTTCGGG-TTT--CGGG
1 CGGGTTTCGGGTTTCGGG-TTTC-GGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGG
4806817 TTTCGGGTTTGCGG
64 TTTC-GGTTT-CGG
* *
4806831 -GTTCGGTTTCGGGTTTCGGGTTTGGGATTTC-GGTTT-CGGGTTTCGGG-TTCGAGG-TTT--C
1 CG---GGTTTCGGGTTTCGGGTTTCGG-TTTCAGGTTTCCGGGGTTCGGGTTTCG-GGTTTTCGC
*
4806889 GGGTTTCGGAGTTT--T
61 GGGTTTC-G-GTTTCGG
* * * *
4806904 CGGGTTCCGGGTATTCGGGTTTCGGGTTTCGGGTTT-CGGGATTTTCGGGTGTC-GG-TTT--C-
1 CGGGTTTCGGGT-TTCGGGTTTC-GGTTTCAGGTTTCCGGG--GTTCGGGTTTCGGGTTTTCGCG
4806963 GGTTTCGGGTTTC-G
62 GGTTTC-GGTTTCGG
* * * *
4806977 CGGGTTTCGGG-TTCGGGTTATCGGGTTC-GGGTTGCGGGAATTTCCGGGTTTCGGG---T--CG
1 CGGGTTTCGGGTTTCGGGTT-TCGGTTTCAGGTTTCCGGG--GTT-CGGGTTTCGGGTTTTCGCG
* **
4807035 GGTTTCGGGTT-AT
62 GGTTTCGGTTTCGG
* * * * **
4807048 CGGGTTTCGGGTTTAGGGTTTCGG-TTCGGGGTT-CGGGTTTCGGGGTTTC-GGTTTGGTTTCGG
1 CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTC-GGGTTTCGGGTTT--TCGCGG
*
4807110 GTATTCGGGTTC-G
63 GT-TTCGGTTTCGG
* * * * *
4807123 -GGTTTTACGGGTTTCGGG-GTCGGGTGTCGGCGTTT-CGGGTTTC-GGTTTCGGG--TT--C-G
1 CGGGTTT-CGGGTTTCGGGTTTC-GGTTTCAG-GTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGG
* *
4807179 GTATTCGG-GT-GT
63 GT-TTCGGTTTCGG
* * * *
4807191 CGGGTTTCGGGTTGTTCGGGTTTCGGTTTCGGGTTTTCGGGAG-TCGGGTATCGGGTTAT--CGG
1 CGGGTTTCGGG-T-TTCGGGTTTCGGTTTCAGGTTTCCGGG-GTTCGGGTTTCGGGTTTTCGCGG
*
4807253 GTTACGGGTTTC--
63 GTTTC-GGTTTCGG
* * * * * * *
4807265 AGGG-TTCGGGTTTAGGGTGTCGGGTTGCCGGTATTCCGGGTTTCGGG-TTCAGGTTTTC-CGGG
1 CGGGTTTCGGGTTTCGGGTTTC-GGTTTCAGGT-TTCCGGGGTTCGGGTTTCGGGTTTTCGCGGG
*
4807327 TTTCGGGTT---
64 TTTCGGTTTCGG
4807336 CGGGTTTCGGGTTTCGGAG-TTCGGAGTTTCAAGGTTAT-C-GGGTTCGGG-TTCGGGTTTT--C
1 CGGGTTTCGGGTTTCGG-GTTTC-G-GTTTC-AGGTT-TCCGGGGTTCGGGTTTCGGGTTTTCGC
4807395 GGGTTTCGGGATTTCGG
61 GGGTTTC-GG-TTTCGG
* * * *
4807412 TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTCGGGTTT-CGGGTTTCGAGGTTGCGGGTTT
1 ---CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTCG-GGTTTCGGGTTT
4807471 CGGGTTTCGG
Statistics
Matches: 4081, Mismatches: 401, Indels: 1311
0.70 0.07 0.23
Matches are distributed among these distances:
62 2 0.00
63 19 0.00
64 12 0.00
65 38 0.01
66 58 0.01
67 57 0.01
68 71 0.02
69 90 0.02
70 197 0.05
71 214 0.05
72 255 0.06
73 288 0.07
74 311 0.08
75 316 0.08
76 346 0.08
77 265 0.06
78 274 0.07
79 269 0.07
80 201 0.05
81 191 0.05
82 189 0.05
83 131 0.03
84 121 0.03
85 63 0.02
86 49 0.01
87 14 0.00
88 12 0.00
89 10 0.00
90 10 0.00
91 4 0.00
92 4 0.00
ACGTcount: A:0.05, C:0.15, G:0.41, T:0.39
Consensus pattern (75 bp):
CGGGTTTCGGGTTTCGGGTTTCGGTTTCAGGTTTCCGGGGTTCGGGTTTCGGGTTTTCGCGGGTT
TCGGTTTCGG
Found at i:4802808 original size:54 final size:53
Alignment explanation
Indices: 4802652--4807637 Score: 503
Period size: 52 Copynumber: 96.5 Consensus size: 53
4802642 CGGTTTGCGG
* * * *
4802652 TTCGGGGTTTC-GGTTTCCGGGTTTCGGGTTTC-G-GGT-TTCACGGTTTC-GGT
1 TTCGGGGTTTCGGGTTT-CGGGTTGCGGGTTTCAGAGTTCTTC-GGGTATCGGGT
* * *
4802702 TTC-GGGTTTCGGGTTTCGGGTTTCGGGTTTCAGGGTTCTTCGGGTGTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
4802754 TTCAGGGGTTTCGGGTTTCGGGTTGCGGGTTTC-GAAG-T-TTCGGGTATCCAGGGT
1 TTC-GGGGTTTCGGGTTTCGGGTTGCGGGTTTCAG-AGTTCTTCGGGTAT-C-GGGT
* *
4802808 TTCGGGATTTCGGGTTTCGGG-T-CGGG-TT-ATA-TTCCGGGTTCGGG-ATCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTT-C---TTCGGGTATCGGGT
*
4802859 TTC-GGGTTTCGGGTATTCCGGGTT-CGGGTTTCAG-G-T-TTCGGGTTTCGGAG-
1 TTCGGGGTTTCGGGT-TT-CGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGG-GT
* * * *
4802909 TTC-GAGTATTCCGGTTTAGGGTT-CGGGTGTC-G-GTT-TTCCGGGGT-TCGGCGT
1 TTCGGGGT-TTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTT-C-GGGTATCGG-GT
* * * *
4802960 TTC-GGGTTTCGGAGTTTCGGCAGGGTTTACGGG-TTCCG-GGT-TGCGTGGTATC-GGT
1 TTCGGGGTTTCGG-GTTT---C-GGG-TTGCGGGTTTCAGAGTTCTTCG-GGTATCGGGT
* * * * *
4803015 TTCCGGAGTTTCGGGTTTTCGGGTTTCGGGTTTCAG-GGT-TTCGGGTTTCGTGT
1 TT-CGGGGTTTCGGG-TTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
*
4803068 GTC--GGTTTCGGGTTTC-GG--GC--G-TTC-G-G-T-TTCGGGT-TGCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTAT-CGGGT
*
4803109 TTC-GGG-TTC-GGTTTCGGGTT-CGGGTTTCAGGAG-T-TTCGGGTTTCGGGATT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCA-GAGTTCTTCGGGTATCGGG--T
* * * *
4803159 TTCGGGTTTTC-GGTTTCGGGTTTTCGGGTTTC-GGGTT-TTCGGGTTTCGGGT
1 TTCGGGGTTTCGGGTTTCGGG-TTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
*
4803210 AATTC-GGGTTATGCGGGATCTTTCGTGGTT-CGGAGTGTCGGTTC-GAGTT-TTC-GGTTTCGG
1 --TTCGGGGTT-T-CGGG---TTTCG-GGTTGC-G-G-GT---TTCAGAGTTCTTCGGGTATCGG
4803270 GT
52 GT
* * * *
4803272 TTC-GGGTTTCCAGGGTTTCGGGTT-CGAGGTTGCCG-GGT-TTCGGGTTTCGGGT
1 TTCGGGGTTT-C-GGGTTTCGGGTTGCG-GGTTTCAGAGTTCTTCGGGTATCGGGT
* * * *
4803324 TTC-GGGTTTCGGGTTATC-GGTTTCGGGTATATC-GGGTAT-TACGGGGATGCGGGT
1 TTCGGGGTTTCGGGTT-TCGGGTTGCGGGT-T-TCAGAGT-TCTTCGGGTAT-CGGGT
* * * *
4803378 TTC-GGGTTTCGGGTTTCTCGGGTT-CGGGTTTCGGAG-T-TGCGGGTGTCGGAGG
1 TTCGGGGTTTCGGG-TT-TCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGG-GT
* * *
4803430 TTCGGGCTATTCGGGTTCTCGGGTTTCGGGTTTC-G-GTAT-TTCGGGTTTCGGGT
1 TTCGGGGT-TTCGGGTT-TCGGGTTGCGGGTTTCAGAGT-TCTTCGGGTATCGGGT
* * * * *
4803483 TTC-GGG-TTCGGG-TTCGGGTTTCGGGGTATC-GGGGT-TTCGGGTTTACGGGAT
1 TTCGGGGTTTCGGGTTTCGGGTTGC-GGGTTTCAGAGTTCTTCGGGTAT-CGGG-T
* * * * *
4803534 GATC--GGTTTCGGGTTATCGGGTTTC-GG-TAC-G-GGT-TTCGGGTTTCGCGGAAAT
1 -TTCGGGGTTTCGGGTT-TCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCG-GG---T
* * * *
4803586 TTC-GGGTTGCAGGGTTTC-GGTTTCGGGTTTC-G-G-TATTCGGGTTTCGGGT
1 TTCGGGGTTTC-GGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * *
4803635 TTC-GGGTTTCGGAG-TTCGGGTTTCGGGTTTC-G-GGT-TTCGGGTGTCGGGT
1 TTCGGGGTTTCGG-GTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * *
4803684 TTC-GGGTTTCTGGGTATTCGGGTT--AGGTTTC-GGGTTTTTCCCGGGGTTTCGGTAT
1 TTCGGGGTTTC-GGGT-TTCGGGTTGCGGGTTTCAGAGTTCTT--C-GGGTATCGG-GT
* * * *
4803739 TTC-GGGTTTCCCGGGTTATCGGGTTTCGGGTTTCAGGGATATTCGGGTTCTGGTTTCGGGT
1 TTCGGGGTTT--CGGGTT-TCGGGTTGCGGGTTTCA--GA-GTTC---TTCGGGTATCGGGT
* *
4803800 TTCGGGGGTTTCAGGGTTTCGGGGTATTCGGGTTCTC-GAG-T-TTCGGGTTTC-GGT
1 TTC-GGGGTTTC-GGGTTTC-GGGT-TGCGGGTT-TCAGAGTTCTTCGGGTATCGGGT
* * * * *
4803854 TTCGGGG-TTC-GGTTTGCGGGTTTCGGGTTTCTGGGAT-TTCGGGTTCTCGGGT
1 TTCGGGGTTTCGGGTTT-CGGGTTGCGGGTTTCAGAGTTCTTCGGG-TATCGGGT
* * * * * *
4803906 TTC-GTGTTTGCCGGTTTC-GGTT-CGGGTTT-ACGGGTTATACGGGTTTC-GGT
1 TTCGGGGTTT-CGGGTTTCGGGTTGCGGGTTTCA-GAGTTCTTCGGGTATCGGGT
* * * * *
4803956 TTCGGGATTTCGGGTTTCAGGGTTATCAGGGTAAATCTCAGGGATT-ATCGGGTTTC-GGT
1 TTCGGGGTTTCGGGTTTC-GGGTT-GC-GGGT---T-TCAGAG-TTCTTCGGGTATCGGGT
* *
4804015 TTC-GGGTTTCGGGTTTCACGGTTGCGGGTTTC-G-G-T-TTCGGGTTTC---T
1 TTCGGGGTTTCGGGTTTC-GGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * *
4804061 CTC-GGGTTTCGGGTTTCGGGTTTCGGGTGTC-GGGTTC-TCGGGTTTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * *
4804111 TTCGGGATTTCGGGTATTCGGGTTACGGGTTTTC-GGGAT-TTCGGGT-TACGGGT
1 TTCGGGGTTTCGGGT-TTCGGGTTGCGGG-TTTCAGAGTTCTTCGGGTAT-CGGGT
* * * *
4804164 TTC-GGGTTTCCGGGTTTCGGGATT-CGGGTTTC-GAGGTGTGCGGGGTTTCGGGT
1 TTCGGGGTTT-CGGGTTTCGGG-TTGCGGGTTTCAGAGTTCTTC-GGGTATCGGGT
* *
4804217 TTC-GGGTTTCGAGCTGCGTTTCGAGGTTTCGCGGTTTC-GGGTT-TTCGGGT-TCAGGGT
1 TTCGGGGTTTC--G--G-GTTTCG-GGTTGCG-GGTTTCAGAGTTCTTCGGGTATC-GGGT
* * *
4804274 TTCGGGCTATCGGGTAGTTCGGAGTT--GGGTTTC-G-G---TTCGGGTTTCGGGT
1 TTCGGGGTTTCGGGT--TTCGG-GTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * **
4804323 TTC-GGGTTTACAGGGTTTCGAGGTTTTCCGG-TTC-G-GTTC--GGGGTGGCGGGT
1 TTCGGGGTTT-C-GGGTTTCG-GG-TTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * *
4804374 TTC-GGGTTCGCGGGTTTC-GGTTTCCGGTTT-AG-GGTATTCGGGT-TGCGGGT
1 TTCGGGGTT-TCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTAT-CGGGT
* * * *
4804424 TTC-GGG-TTCGTGTTTCGGGTTGCGGGTTTC-GGGGT-TTCGGGTTTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* *
4804473 TT--GGGTTTCGGGTTTCGGGTT-C-GG--TC-G-GGTCTTCGGGTTTC-GG-
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * ** *
4804516 TTCGGGTTTTCTGGGTTTCGGGTATTCGGGTTTC-G-G-GGTTCGGGTTTCGGGT
1 TTCGGGGTTTC-GGGTTTCGGGT-TGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * * *
4804568 TAC-GGGTTTCGGGGTATTCGGGTTTTCGGGTATTC-GGGTT-TCCGGGTTTCGGAT
1 TTCGGGGTTTC-GGGT-TTCGGG-TTGCGGGT-TTCAGAGTTCTTCGGGTATCGGGT
* * * ** * *
4804622 TTCCGGGTTGCGGAGTTATC-GGTT-CGGGTTTTCGGTTTTATTCGGGTTTCGGGT
1 TTCGGGGTTTCGG-GTT-TCGGGTTGCGGG-TTTCAGAGTTCTTCGGGTATCGGGT
* * * *
4804676 TATCGGGATGTCGGGTTTCGGGTAT-CGGTATTTC-GGGTT-TTCGGGT-TCGCGGT
1 T-TCGGGGTTTCGGGTTTCGGGT-TGCGG-GTTTCAGAGTTCTTCGGGTATCG-GGT
* * * * *
4804729 TCTC-GGGTTTCGAGG-TTCGGGTTTCGGGTTTC-GGGAT-GTCGGGTTTCGGGT
1 T-TCGGGGTTTCG-GGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * *
4804780 TTC-GGGTTTCGGGTATCGGAGTTTACGGTTTATC-GGGTT-TACGGGT-TCGGGT
1 TTCGGGGTTTCGGGTTTCGG-G-TTGCGGGTT-TCAGAGTTCTTCGGGTATCGGGT
* * *
4804832 TTC---G-TTCGGGTTTCGGGTT-C-GGTTTCGGGGTT-TTC-GGTTTC-GGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* *
4804876 TTC-GGGTTTCGGGTTTC-GGTT-CGGGTTTC-G-G--GTTCGGGTTTC-GG-
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * * *
4804920 TTC-AGG-TTCGGGTTTCGGGTTTAC-GGTTTC-GGGGTGTTCGGGTTTTCGGGT
1 TTCGGGGTTTCGGGTTTCGGG-TTGCGGGTTTCAGAGTTCTTCGGG-TATCGGGT
* * * * *
4804971 TTCGGGATTCCGGGATTTCGGGGTTGC-GGTTTC-GGGGT-TTCGGGTTTCGGGT
1 TTCGGGGTTTCGGG-TTTC-GGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * ** *
4805023 TTCAGGG-TTCGAGGTTTC-GGTTTC-GGTTTC-GGGTGATTCGCGGTTTCCGGGT
1 TTCGGGGTTTCG-GGTTTCGGGTTGCGGGTTTCAGAGTTCTTCG-GGTAT-CGGGT
* * * * * *
4805075 TTCAGGGTTTCGGGTTTCGGGTTTCGGAG-TTC-GGGGTATTCGGGTTTTCGGAGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGG-GTTTCAGAGTTCTTCGGG-TATCGG-GT
*
4805129 TTC-GGGTTTCGGAGTATTCGGGATCTTGCGGG-TTC-G-G-T-TTCGGGGGTTTCGGGT
1 TTCGGGGTTTCGG-GT-TTCGGG---TTGCGGGTTTCAGAGTTCTTC--GGGTATCGGGT
* **
4805183 TTC-GGGTTTCGGGTTTCGGGTTTC--GTTTC-G-G-GGTTCGGGTATTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTA-TCGGGT
* * * *
4805231 TCGCCGGGGGGTTTGCGGGTTT--GGTTTC-GGTTTC---GTT-TGCGGGTTTC-GGT
1 T--TC--GGGGTTT-CGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * *
4805281 TTCGGTTTCGGTTTCAGGAGTTTCGGGTTTCGGG-TTC-GGGTT-TTCAGGGCATTTCGGGT
1 TTCGG----GGTTTC-GG-GTTTCGGGTTGCGGGTTTCAGAGTTCTTC-GGG--TATCGGGT
* * *
4805340 TTC-GGGTTTCGGAGTTTC-GGTTTCAGGG-TTCAGGAGTT-TACAGGGTTTCGGGT
1 TTCGGGGTTTCGG-GTTTCGGGTTGC-GGGTTTCA-GAGTTCTTC-GGGTATCGGGT
* * ** * * *
4805393 TGCAGGGTTGTCGGGGTGGCGGGTCTTCGGGTTTC-GGGTT-TTCGGGTTTCGGGGTAT
1 TTCGGGGTT-TC-GGGTTTCGGGT-TGCGGGTTTCAGAGTTCTTCGGGTATC-GGG--T
* * *
4805450 TCTACTCGGGTTATCGGGTTTC-GGTTTCAGGGTATTC-G-GGT-TTCGGGT-TCGGGT
1 T-T-C-GGGGTT-TCGGGTTTCGGGTTGC-GGGT-TTCAGAGTTCTTCGGGTATCGGGT
* * * * *
4805504 TTC-GGGTGTCGGGTATTCAGGGTTTCGGGTTTC-GGGTTTCCTCGGGTTTC-GGT
1 TTCGGGGTTTCGGGT-TTC-GGGTTGCGGGTTTCAGAG-TTCTTCGGGTATCGGGT
* * * *
4805557 TTC-GGGTATTCAGGGTTTC-GGTTTCGGAGTTTC-G-GGT-GTCGGGTTTCGGGT
1 TTCGGGGT-TTC-GGGTTTCGGGTTGCGG-GTTTCAGAGTTCTTCGGGTATCGGGT
* * * * * *
4805608 TGC-GGGTTGC-GGTTTCGGGTTTCGGG-TT-GGGGTT-TTCGGGTTTCGGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATC-GGGT
* * *
4805657 TTC--GGTTTCCGGGATTTCGGGTT-C-GG-TT-AGCGGGT-TTCGGGTTTCCGGGGT
1 TTCGGGGTTT-CGGG-TTTCGGGTTGCGGGTTTCAG-AGTTCTTCGGGTAT-C-GGGT
** * *
4805708 TTCACGG-TTCGAGGATTTCGGGTATATCGGGTTTC-G-GTT-TACGGGT-TACGGGTT
1 TTCGGGGTTTCG-GG-TTTCGGGT-T-GCGGGTTTCAGAGTTCTTCGGGTAT-CGGG-T
* * * *
4805762 CTTC-GGGTTTCGGGTTTCCGGGTTTCGGGTGTC-GGGTCTTTTCGGGTATTCGGGT
1 -TTCGGGGTTTCGGGTTT-CGGGTTGCGGGTTTCAGAGT-TCTTCGGGTA-TCGGGT
* *
4805817 TT--GGGTTTCAGGGTTTCGGG-TGTCGGGTTT-GGAGATTCGGGTTTCGGGT-TTGCGGT
1 TTCGGGGTTTC-GGGTTTCGGGTTG-CGGGTTTCAGAG-TTC----TTCGGGTATCG-GGT
* * *
4805873 TTAC-GGGTATTCGGGTTTCGGGTTTCCGGGTTTC-GGGTT-TCCGGGT-TCCGGGT
1 TT-CGGGGT-TTCGGGTTTCGGG-TTGCGGGTTTCAGAGTTCTTCGGGTAT-CGGGT
* * *
4805926 CATTCGGAGTTTCGGAAGTTTCGGG-T-CGGGTTTCGGAGTT-TTCGGAGTTTCGGGT
1 --TTCGGGGTTTCGG--GTTTCGGGTTGCGGGTTTCAGAGTTCTTCGG-GTATCGGGT
** * * * *
4805981 TTC-GGGTTTCGGCGTTTCGGGTTTAGGGTGTC-G-GTTTTATCGTGTTTCGGAGT
1 TTCGGGGTTTCGG-GTTTCGGGTTGCGGGTTTCAGAGTTCT-TCGGGTATCGG-GT
* * * * *** *
4806034 TATCAGGCGTTTCTTCGGTTTCGGGTAATCTCGGGTTTCCG-GCGGTTCGGGTTTCGGGT
1 T-TC-GGGGTTTC--GGGTTTCGGGT--T-GCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * *
4806093 TTCGGGTTTTC--G---CGGGTTTC-GGTTTCAG-G--GTTCGGG-GTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * *
4806136 TTCGGG-TTTCGGGTTTCGGGGTGC-GGTTTC-G-GGT-TTC-GGTTTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * *
4806183 TTCGGAGTTTC-GGTTTCGGGTTTCGGGTATTC-GAGGT-TTCGGGTAACTTACGGG-
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGT-TTCAGAGTTCTTCGGGT-A--T-CGGGT
* * * * *
4806237 TTCACGGGTTTCCAGGTTTCAAGGGTTTCGGGTTTCGGGGGTT-TTCGAGGTATTTCGGG-
1 TTC-GGGGTTT-CGGGTTTC--GGGTTGCGGGTTTC-AGAGTTCTTCG-GGTA--TCGGGT
* *
4806296 TTCGGGG-TTCGGGTTTCGGGTTTC-GGTTTC-GGGTTATCTTTCAGGGT-TCGGGATT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAG-T-TC-TTC-GGGTATCGGG--T
** * *
4806351 TATC-GGGTTTCGAGGTGGC-GGTT-CGGGTTTCGGAGTT-TTCGGCGTCTTCGGGT
1 T-TCGGGGTTTCG-GGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGG-GT-ATCGGGT
* * *
4806404 TTC-GGGTTTCGGCGTTTCGGGGTTTCGGGTTT-ACG-GGT-TTCGGGTTTCGGAG-
1 TTCGGGGTTTCGG-GTTTC-GGGTTGCGGGTTTCA-GAGTTCTTCGGGTATCGG-GT
* * * *
4806456 TTC-AGGTTTC-GGTTTCGGGTTTGC-GG-TTC-G-GGT-TTCGGGTTTCGGGG
1 TTCGGGGTTTCGGGTTTCGGG-TTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * *
4806503 TTCCGGGTTTACGGGTTTCGGGTATTTC-GGTTT-ACGGGTT-TTCGGGTTTCGGGT
1 TTCGGGGTTT-CGGGTTTCGGG--TTGCGGGTTTCA-GAGTTCTTCGGGTATCGGGT
* *
4806557 TTC-GGGTTTCGGGATTTCGGGATTGCGGGTTTC-G-GGT-TTCAGGGTTTCGGGT
1 TTCGGGGTTTCGGG-TTTCGGG-TTGCGGGTTTCAGAGTTCTTC-GGGTATCGGGT
* * * **
4806609 TTCAGGGTTTCGAGGTATATC-GCTTTCGGG-TTC-G-G------GTATATCCGGGT
1 TTCGGGGTTTCG-GGT-T-TCGGGTTGCGGGTTTCAGAGTTCTTCGGGTAT-CGGGT
* * *
4806656 TTCGGGGTTTCGTGTTTCGGGTTGGCGGGTTT-AGGGTGTC--GGGGT-TC-GGT
1 TTCGGGGTTTCGGGTTTCGGGTT-GCGGGTTTCAGAGT-TCTTCGGGTATCGGGT
*
4806706 TATC--GGTTTCGGGTTTCCGGGTTTCGGGTTTCCAGGAG-T-TTCAGGGTATCGGGT
1 T-TCGGGGTTTCGGGTTT-CGGGTTGCGGGTTT-CA-GAGTTCTTC-GGGTATCGGGT
* * *
4806760 TTC-GGGTTTCGGGTTTTCGGGTTTCGGGTTTTC-G-GGT-TTCGGGTTTCGGGT
1 TTCGGGGTTTCGGG-TTTCGGGTTGCGGG-TTTCAGAGTTCTTCGGGTATCGGGT
* *
4806811 TTC-GGGTTTCGGGTTTGCGGGTT-C-GGTTTC-G-GGT-TTCGGGT-TTGGGAT
1 TTCGGGGTTTCGGGTTT-CGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGG-T
* *
4806859 TTC--GGTTTCGGGTTTCGGGTT-CGAGGTTTC-G-GGT-TTCGGAGTTTTCGGG-
1 TTCGGGGTTTCGGGTTTCGGGTTGCG-GGTTTCAGAGTTCTTCGG-G-TATCGGGT
* * * *
4806908 TTCCGGGTATTCGGGTTTCGGGTTTCGGGTTTC-GGGATT-TTCGGGTGTC-GGT
1 TTCGGGGT-TTCGGGTTTCGGGTTGCGGGTTTCAGAG-TTCTTCGGGTATCGGGT
* * *
4806960 TTC--GGTTTCGGGTTTCGCGGGTTTCGGG-TTC-GGGTT-ATCGGGT-TCGGGT
1 TTCGGGGTTTCGGGTTT--CGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * *
4807009 TGCGGGAATTTCCGGGTTTCGGG-T-CGGGTTTC-GGGTT-ATCGGGTTTCGGGT
1 TTCGGG-GTTT-CGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * *
4807060 TT-AGGGTTTC-GG-TTCGGGGTT-CGGGTTTC-GGGGT-TTC-GGT-T-TGGT
1 TTCGGGGTTTCGGGTTTC-GGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* ** *
4807105 TTC-GGGTATTCGGG-TTCGGGTTTTACGGGTTTC-G-G--GGTCGGGTGTCGGCGT
1 TTCGGGGT-TTCGGGTTTCGGG--TTGCGGGTTTCAGAGTTCTTCGGGTATCGG-GT
*
4807156 TTC-GGGTTTC-GGTTTCGGGTT-C-GG--T---A----TTCGGGTGTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * *
4807196 TTCGGGTTGTTCGGGTTTC-GGTTTCGGGTTTTCGGGAG----TCGGGTATCGGGT
1 TTCGGGGT-TTCGGGTTTCGGGTTGCGGG-TTTC-AGAGTTCTTCGGGTATCGGGT
* * *
4807247 TATC-GGGTTACGGGTTTCAGGGTT-CGGGTTT-AGGGTGTCGGGTTGCCGGTATTCCGGGT
1 T-TCGGGGTTTCGGGTTTC-GGGTTGCGGGTTTCAGAGT-TC---TT-CGGGTA-T-CGGGT
* * * *
4807306 TTC-GGG-TTCAGGTTTTCCGGGTTTCGGG-TTC-G-GGT-TTCGGGTTTCGGAG-
1 TTCGGGGTTTC-GGGTTT-CGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGG-GT
* * * *
4807355 TTCGGAGTTTCAAGGTTATCGGGTT-CGGG-TTC-GGGTT-TTCGGGTTTCGGGAT
1 TTCGGGGTTTC-GGGTT-TCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGG-T
* * *
4807407 TTC--GGTTTCGGGTTTCGGGTTTCGGGTTTC-G-G--GTTCGGGTTTCGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
* * * * * *
4807454 TTCGAGGTTGCGGGTTTCGGGTTTCGGGTTTTC-GGGTT-ATCGGGGTTTTCGGGGT
1 TTCGGGGTTTCGGGTTTCGGGTTGCGGG-TTTCAGAGTTCTTC-GGG-TATC-GGGT
* *
4807509 TTCGAGAGTTTCGGGTTTC-GGTTGGGGGTTTC-G-G-T-TTCGGGTTATCGGGT
1 TTCG-GGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGG-TATCGGGT
* * * *
4807559 TTCCGGGTTTTC--G-TTCGGAGTT-CGGGATTTCCGAGGT-TTCGAGGTTTCGGGGT
1 TT-CGGGGTTTCGGGTTTCGG-GTTGCGGG-TTTCAGAGTTCTTCG-GGTATC-GGGT
*
4807612 TTC-GGGTTTCGGGTTTCGGGTGGCGG
1 TTCGGGGTTTCGGGTTTCGGGTTGCGG
4807638 TTGCGGGTTC
Statistics
Matches: 3991, Mismatches: 345, Indels: 1196
0.72 0.06 0.22
Matches are distributed among these distances:
40 12 0.00
41 33 0.01
42 16 0.00
43 34 0.01
44 41 0.01
45 77 0.02
46 83 0.02
47 164 0.04
48 217 0.05
49 380 0.10
50 379 0.09
51 412 0.10
52 488 0.12
53 460 0.12
54 402 0.10
55 224 0.06
56 122 0.03
57 114 0.03
58 114 0.03
59 94 0.02
60 51 0.01
61 16 0.00
62 29 0.01
63 25 0.01
64 2 0.00
65 2 0.00
ACGTcount: A:0.05, C:0.15, G:0.41, T:0.39
Consensus pattern (53 bp):
TTCGGGGTTTCGGGTTTCGGGTTGCGGGTTTCAGAGTTCTTCGGGTATCGGGT
Found at i:4803829 original size:9 final size:8
Alignment explanation
Indices: 4800464--4807740 Score: 1617
Period size: 7 Copynumber: 981.2 Consensus size: 8
4800454 GATGGGGGTT
*
4800464 GGGGTTTT
1 GGGGTTTC
4800472 GGGGTTT-
1 GGGGTTTC
*
4800479 GGGGTTTT
1 GGGGTTTC
* *
4800487 GAGGTTTTT
1 G-GGGTTTC
* *
4800496 AGGG-TTG
1 GGGGTTTC
*
4800503 GGGGTTTA
1 GGGGTTTC
*
4800511 GGGGTCT-
1 GGGGTTTC
4800518 GGGGTTT-
1 GGGGTTTC
4800525 GGGGTTT-
1 GGGGTTTC
*
4800532 GGGG-TTA
1 GGGGTTTC
4800539 GGGGTTT-
1 GGGGTTTC
4800546 GGGG-TTC
1 GGGGTTTC
4800553 GGGTGGTTT-
1 -GG-GGTTTC
4800562 GGGGTTT-
1 GGGGTTTC
4800569 GGGGTTT-
1 GGGGTTTC
4800576 GGGGTTT-
1 GGGGTTTC
4800583 GGGG-TT-
1 GGGGTTTC
4800589 GGGGTTT-
1 GGGGTTTC
*
4800596 GGGGTTTT
1 GGGGTTTC
4800604 GGGGTTT-
1 GGGGTTTC
*
4800611 GGGGTTGAGTA
1 GGGGTT---TC
4800622 GGGGTTT-
1 GGGGTTTC
4800629 GGGG-TT-
1 GGGGTTTC
4800635 GGGGTTT-
1 GGGGTTTC
4800642 GGGGTTT-
1 GGGGTTTC
4800649 GGGG-TT-
1 GGGGTTTC
4800655 GGGGTTT-
1 GGGGTTTC
*
4800662 GGGGTTTT
1 GGGGTTTC
* *
4800670 GGGGTGTG
1 GGGGTTTC
4800678 GGGGTTT-
1 GGGGTTTC
4800685 GGGGTTT-
1 GGGGTTTC
*
4800692 -GGG-TTG
1 GGGGTTTC
4800698 GGGGTTT-
1 GGGGTTTC
*
4800705 GGGGTTTT
1 GGGGTTTC
4800713 GGGG-TT-
1 GGGGTTTC
*
4800719 -GGGTTTA
1 GGGGTTTC
4800726 GGGG-TTC
1 GGGGTTTC
*
4800733 -GGG--TG
1 GGGGTTTC
4800738 GGGGTTT-
1 GGGGTTTC
4800745 -GGGTTT-
1 GGGGTTTC
4800751 GGGGTTT-
1 GGGGTTTC
4800758 GGGGTTT-
1 GGGGTTTC
4800765 GGGGTTT-
1 GGGGTTTC
4800772 GGGGTTT-
1 GGGGTTTC
*
4800779 GGGGTTTG
1 GGGGTTTC
4800787 GAGGGTTT-
1 G-GGGTTTC
4800795 -GGGTTT-
1 GGGGTTTC
*
4800801 TGGGTTT-
1 GGGGTTTC
*
4800808 GGGGTTTG
1 GGGGTTTC
*
4800816 GGGGATTTT
1 GGGG-TTTC
4800825 GGGGTTT-
1 GGGGTTTC
4800832 GGGGTTT-
1 GGGGTTTC
4800839 -GGGTTT-
1 GGGGTTTC
*
4800845 GGGGCTATTT
1 GGGG-T-TTC
4800855 GGGG-TT-
1 GGGGTTTC
*
4800861 GAGTGTTT-
1 G-GGGTTTC
4800869 GGGGTTT-
1 GGGGTTTC
4800876 GGGGTTT-
1 GGGGTTTC
*
4800883 GGGAGTTTGT
1 GGG-GTTT-C
4800893 GGGAGTTT-
1 GGG-GTTTC
*
4800901 GGGGTGTGTT
1 GGGGT-T-TC
4800911 GGGGTTGGT-
1 GGGGTT--TC
*
4800920 GTGGTTT-
1 GGGGTTTC
*
4800927 GGGGTTTT
1 GGGGTTTC
4800935 GGGGTTT-
1 GGGGTTTC
4800942 GGGGTTT-
1 GGGGTTTC
4800949 GGGGTTT-
1 GGGGTTTC
*
4800956 TGGG-TT-
1 GGGGTTTC
* *
4800962 GGGTTTTAT
1 GGGGTTT-C
*
4800971 GGGGTTTT
1 GGGGTTTC
4800979 GGGGTTT-
1 GGGGTTTC
*
4800986 GGGGTGT-
1 GGGGTTTC
*
4800993 GGGATTT-
1 GGGGTTTC
4801000 GGGGTTT-
1 GGGGTTTC
4801007 GTGGGTTT-
1 G-GGGTTTC
*
4801015 GGGG-TTG
1 GGGGTTTC
4801022 GGGGTTT-
1 GGGGTTTC
4801029 GGGGTTT-
1 GGGGTTTC
4801036 GGGGTTT-
1 GGGGTTTC
4801043 -GGGTTT-
1 GGGGTTTC
4801049 GGGGTTT-
1 GGGGTTTC
4801056 GGGGTTT-
1 GGGGTTTC
4801063 GGGGTTT-
1 GGGGTTTC
*
4801070 GGGGTTTT
1 GGGGTTTC
*
4801078 GGGGTTTTG
1 GGGG-TTTC
4801087 GGGGTTT-
1 GGGGTTTC
*
4801094 GGGG-TTG
1 GGGGTTTC
4801101 GGGGTTT-
1 GGGGTTTC
*
4801108 GGGGTTTTT
1 GGGG-TTTC
*
4801117 GGGGTTTG
1 GGGGTTTC
4801125 GGGGTTT-
1 GGGGTTTC
*
4801132 GGGGTTTT
1 GGGGTTTC
4801140 GGGGTTT-
1 GGGGTTTC
4801147 GGGGTTT-
1 GGGGTTTC
4801154 GGGGTTT-
1 GGGGTTTC
*
4801161 GGGGTTTT
1 GGGGTTTC
* *
4801169 GGGGGTTG
1 GGGGTTTC
4801177 GGGGTTT-
1 GGGGTTTC
4801184 GGGGTTT-
1 GGGGTTTC
4801191 -GGG-TT-
1 GGGGTTTC
4801196 GGGGTTT-
1 GGGGTTTC
4801203 GGGGTTT-
1 GGGGTTTC
*
4801210 GGTGTTT-
1 GGGGTTTC
4801217 GGGGTTT-
1 GGGGTTTC
4801224 GGGGTTT-
1 GGGGTTTC
4801231 GGGG-TT-
1 GGGGTTTC
4801237 -GGGTTT-
1 GGGGTTTC
4801243 GGGG-TT-
1 GGGGTTTC
4801249 GGGGTTT-
1 GGGGTTTC
4801256 GGGGTTT-
1 GGGGTTTC
4801263 GGGGTTT-
1 GGGGTTTC
4801270 GGGG-TT-
1 GGGGTTTC
4801276 GGGGTTT-
1 GGGGTTTC
4801283 GGGGTTT-
1 GGGGTTTC
4801290 -GGGTTT-
1 GGGGTTTC
4801296 GGGGTTT-
1 GGGGTTTC
4801303 GGGGTTT-
1 GGGGTTTC
4801310 -GGGTTT-
1 GGGGTTTC
4801316 GGGG--T-
1 GGGGTTTC
4801321 -GGGTTT-
1 GGGGTTTC
4801327 GGGG-TT-
1 GGGGTTTC
4801333 GGGGTTT-
1 GGGGTTTC
4801340 -GGGTTT-
1 GGGGTTTC
4801346 GGGGTTT-
1 GGGGTTTC
4801353 GGGGTTT-
1 GGGGTTTC
4801360 GGGGTTT-
1 GGGGTTTC
4801367 GGGGTTT-
1 GGGGTTTC
4801374 GGGGTTT-
1 GGGGTTTC
4801381 -GGGTTT-
1 GGGGTTTC
4801387 GGGGTTT-
1 GGGGTTTC
4801394 GGGGTTT-
1 GGGGTTTC
4801401 GGGGTTT-
1 GGGGTTTC
4801408 GGGGTTT-
1 GGGGTTTC
4801415 GGGGTTT-
1 GGGGTTTC
4801422 GGGGTTT-
1 GGGGTTTC
4801429 GGGGTTT-
1 GGGGTTTC
*
4801436 GGGGTTGGTT
1 GGGGTT--TC
4801446 GGGGTTT-
1 GGGGTTTC
4801453 GGGGTTT-
1 GGGGTTTC
4801460 GGGGTTT-
1 GGGGTTTC
4801467 GGGGTTT-
1 GGGGTTTC
4801474 GGGGTTT-
1 GGGGTTTC
4801481 GGGG-TT-
1 GGGGTTTC
4801487 GGGGTTT-
1 GGGGTTTC
4801494 GGGGTTT-
1 GGGGTTTC
4801501 GGGGTTT-
1 GGGGTTTC
4801508 GGGGTTT-
1 GGGGTTTC
4801515 GGGGTTT-
1 GGGGTTTC
4801522 GGGGTTT-
1 GGGGTTTC
4801529 GGGGTTT-
1 GGGGTTTC
4801536 GGGG-TT-
1 GGGGTTTC
4801542 GGGGTTT-
1 GGGGTTTC
4801549 -GGGTTT-
1 GGGGTTTC
4801555 GGGGTTT-
1 GGGGTTTC
4801562 GGGGTTT-
1 GGGGTTTC
*
4801569 GGGGTTTT
1 GGGGTTTC
4801577 GGGGTTT-
1 GGGGTTTC
4801584 GGGGTTT-
1 GGGGTTTC
4801591 GGGG-TT-
1 GGGGTTTC
*
4801597 -GGGTTTG
1 GGGGTTTC
4801604 GGGGTTT-
1 GGGGTTTC
4801611 GGGGTTT-
1 GGGGTTTC
4801618 GGGGTTT-
1 GGGGTTTC
*
4801625 GGGGTTGC
1 GGGGTTTC
*
4801633 GGGAG-TTG
1 GGG-GTTTC
4801641 GGGGTTT-
1 GGGGTTTC
*
4801648 GGGGTTATA
1 GGGGTT-TC
*
4801657 GGCGTTT-
1 GGGGTTTC
4801664 -GGGTTAT-
1 GGGGTT-TC
*
4801671 GGGGTTTTT
1 GGGG-TTTC
4801680 GGGGTTTC
1 GGGGTTTC
4801688 TTAGGGGTTT-
1 ---GGGGTTTC
*
4801698 GGGGCTTTA
1 GGGG-TTTC
*
4801707 GAGGGTTTA
1 G-GGGTTTC
4801716 GGGG--T-
1 GGGGTTTC
4801721 GGGGTTT-
1 GGGGTTTC
4801728 -GGGTTT-
1 GGGGTTTC
*
4801734 TGGGTTT-
1 GGGGTTTC
*
4801741 GGGGTTTT
1 GGGGTTTC
*
4801749 GGGG-TTG
1 GGGGTTTC
4801756 GGGGTTT-
1 GGGGTTTC
4801763 GGGGATTTGC
1 GGGG-TTT-C
*
4801773 AGGGTTT-
1 GGGGTTTC
*
4801780 GGGGTTATA
1 GGGGTT-TC
*
4801789 GGGGTTTA
1 GGGGTTTC
4801797 GGGGTTT-
1 GGGGTTTC
4801804 GGGG-TT-
1 GGGGTTTC
*
4801810 GGGAGTTTG
1 GGG-GTTTC
4801819 GGAGGCTGTT-
1 GG-GG-T-TTC
4801829 -GGG-TT-
1 GGGGTTTC
4801834 GGGGTTATC
1 GGGGTT-TC
4801843 AGGGGTTT-
1 -GGGGTTTC
4801851 GGGGTTT-
1 GGGGTTTC
*
4801858 GGGCTTT-
1 GGGGTTTC
4801865 GGGGTTT-
1 GGGGTTTC
4801872 GCGGGTTT-
1 G-GGGTTTC
4801880 GGGGTTT-
1 GGGGTTTC
*
4801887 GGGGGTT-
1 GGGGTTTC
4801894 -GGGTTT-
1 GGGGTTTC
4801900 GGGG-TT-
1 GGGGTTTC
4801906 GGAGGATTT-
1 GG-GG-TTTC
4801915 -GGGTTT-
1 GGGGTTTC
4801921 GGGGTTT-
1 GGGGTTTC
4801928 -GGGTATTC
1 GGGGT-TTC
4801936 --GGTTTC
1 GGGGTTTC
4801942 --GGTTTAC
1 GGGGTTT-C
4801949 -GGGTTTAC
1 GGGGTTT-C
4801957 -GGGTTTC
1 GGGGTTTC
*
4801964 GAGGTATTC
1 GGGGT-TTC
4801973 -GGG-TT-
1 GGGGTTTC
*
4801978 GCGGTTTC
1 GGGGTTTC
4801986 -GGGTACTT-
1 GGGGT--TTC
4801994 -GGGTTTC
1 GGGGTTTC
4802001 -GGGTTCTCC
1 GGGGTT-T-C
* *
4802010 GGGATATC
1 GGGGTTTC
4802018 GGGGTTT-
1 GGGGTTTC
*
4802025 -GGGATTC
1 GGGGTTTC
4802032 -GGG--TC
1 GGGGTTTC
*
4802037 GAGAGTATTC
1 G-GGGT-TTC
*
4802047 GCGGTTTCC
1 GGGGTTT-C
*
4802056 GAGG-TTC
1 GGGGTTTC
*
4802063 GGAGTCTTC
1 GGGGT-TTC
4802072 -GGGTTAATC
1 GGGGTT--TC
*
4802081 -AGGTTTC
1 GGGGTTTC
*
4802088 --GCTTTC
1 GGGGTTTC
*
4802094 GAGGATTTC
1 G-GGGTTTC
*
4802103 AGGG-TTC
1 GGGGTTTC
*
4802110 GGGTTTTC
1 GGGGTTTC
4802118 GGTTCGGTTTC
1 GG---GGTTTC
4802129 -GGGTTTC
1 GGGGTTTC
4802136 GGGGTTTC
1 GGGGTTTC
4802144 --GGTTTC
1 GGGGTTTC
4802150 -GGG-TTC
1 GGGGTTTC
4802156 -GGGTCTTC
1 GGGGT-TTC
4802164 --GGTTTAC
1 GGGGTTT-C
*
4802171 GAGGTTTC
1 GGGGTTTC
*
4802179 GAGGTTTTC
1 G-GGGTTTC
*
4802188 GGGG-TTA
1 GGGGTTTC
* *
4802195 GGTG-ATC
1 GGGGTTTC
4802202 -GGGTTTC
1 GGGGTTTC
4802209 GGGG--TC
1 GGGGTTTC
4802215 -GGGTATTC
1 GGGGT-TTC
*
4802223 -GGGTTGC
1 GGGGTTTC
4802230 -GGGTTTCC
1 GGGGTTT-C
*
4802238 GAGGTTTC
1 GGGGTTTC
4802246 GGGGTTTTC
1 GGGG-TTTC
4802255 -GGGTTTC
1 GGGGTTTC
4802262 -GGGTTTC
1 GGGGTTTC
4802269 GAAGGG--TC
1 G--GGGTTTC
4802277 -GGGTATTC
1 GGGGT-TTC
4802285 -GGGTTATCC
1 GGGGTT-T-C
*
4802294 GAGGTTTC
1 GGGGTTTC
4802302 -GGGTTTC
1 GGGGTTTC
4802309 -GGGTTTC
1 GGGGTTTC
4802316 GCGGGTTATC
1 G-GGGTT-TC
4802326 --GGTTTC
1 GGGGTTTC
4802332 GGCCGGGTTTC
1 -G--GGGTTTC
4802343 GCGGGTTTC
1 G-GGGTTTC
4802352 --GGTTATC
1 GGGGTT-TC
4802359 --GGTTTC
1 GGGGTTTC
*
4802365 -AGGTTTCC
1 GGGGTTT-C
4802373 GGGG-TTC
1 GGGGTTTC
4802380 -GGGTTTC
1 GGGGTTTC
4802387 -GGGTTTC
1 GGGGTTTC
4802394 -GGGTTTC
1 GGGGTTTC
4802401 -GGGTTTC
1 GGGGTTTC
4802408 GGAGG--TC
1 GG-GGTTTC
4802415 -GGGTTTC
1 GGGGTTTC
4802422 -GGGTTTC
1 GGGGTTTC
4802429 -GGGTTTC
1 GGGGTTTC
4802436 -GGG-TTC
1 GGGGTTTC
*
4802442 GAGGTTTC
1 GGGGTTTC
*
4802450 TCGGGTTTC
1 -GGGGTTTC
4802459 -GGGTTTAC
1 GGGGTTT-C
*
4802467 GAGGTTTTC
1 G-GGGTTTC
*
4802476 GGGATTTC
1 GGGGTTTC
4802484 --GGTTTC
1 GGGGTTTC
*
4802490 AGCGAGTTTC
1 -G-GGGTTTC
4802500 -GGGTTTC
1 GGGGTTTC
4802507 -GGGTTTC
1 GGGGTTTC
*
4802514 -GGGTTAC
1 GGGGTTTC
4802521 -GGGTTGTC
1 GGGGTT-TC
4802529 -GGG-TTC
1 GGGGTTTC
4802535 --GGTTTC
1 GGGGTTTC
*
4802541 GGGTTTTC
1 GGGGTTTC
4802549 TGCGGGTTATC
1 -G-GGGTT-TC
4802560 GGGGTTTC
1 GGGGTTTC
4802568 -GGGTTTC
1 GGGGTTTC
*
4802575 -GGG-TGC
1 GGGGTTTC
4802581 -GGGTTATC
1 GGGGTT-TC
4802589 -GGG-TTC
1 GGGGTTTC
*
4802595 GGGTTTTC
1 GGGGTTTC
4802603 --GGTTTC
1 GGGGTTTC
4802609 GGGGTTTC
1 GGGGTTTC
4802617 -GGGTTTCC
1 GGGGTTT-C
*
4802625 GGGTTTTC
1 GGGGTTTC
*
4802633 -GGGTATGC
1 GGGGT-TTC
*
4802641 GCGGTTT-
1 GGGGTTTC
*
4802648 GCGG-TTC
1 GGGGTTTC
4802655 GGGGTTTC
1 GGGGTTTC
4802663 --GGTTTC
1 GGGGTTTC
*
4802669 CGGGTTTC
1 GGGGTTTC
4802677 -GGGTTTC
1 GGGGTTTC
4802684 -GGGTTTC
1 GGGGTTTC
**
4802691 ACGGTTTC
1 GGGGTTTC
4802699 --GGTTTC
1 GGGGTTTC
4802705 -GGGTTTC
1 GGGGTTTC
4802712 -GGGTTTC
1 GGGGTTTC
4802719 -GGGTTTC
1 GGGGTTTC
4802726 -GGGTTTC
1 GGGGTTTC
*
4802733 AGGGTTCTTC
1 -GGGGT-TTC
*
4802743 -GGGTGTC
1 GGGGTTTC
4802750 -GGGTTTC
1 GGGGTTTC
4802757 AGGGGTTTC
1 -GGGGTTTC
4802766 -GGGTTTC
1 GGGGTTTC
*
4802773 -GGGTTGC
1 GGGGTTTC
4802780 -GGGTTTC
1 GGGGTTTC
**
4802787 GAAGTTTC
1 GGGGTTTC
*
4802795 -GGGTATCC
1 GGGGT-TTC
*
4802803 AGGGTTTC
1 GGGGTTTC
*
4802811 GGGATTTC
1 GGGGTTTC
4802819 -GGGTTTC
1 GGGGTTTC
4802826 -GGG--TC
1 GGGGTTTC
*
4802831 GGGTTATATTC
1 GGG--GT-TTC
*
4802842 CGGG-TTC
1 GGGGTTTC
*
4802849 -GGG-ATC
1 GGGGTTTC
4802855 -GGGTTTC
1 GGGGTTTC
4802862 -GGGTTTC
1 GGGGTTTC
4802869 -GGGTATTC
1 GGGGT-TTC
*
4802877 CGGG-TTC
1 GGGGTTTC
4802884 -GGGTTTC
1 GGGGTTTC
*
4802891 -AGGTTTC
1 GGGGTTTC
4802898 -GGGTTTC
1 GGGGTTTC
*
4802905 GGAG-TTC
1 GGGGTTTC
*
4802912 -GAGTATTC
1 GGGGT-TTC
*
4802920 -CGGTTT-
1 GGGGTTTC
*
4802926 AGGG-TTC
1 GGGGTTTC
*
4802933 -GGGTGTC
1 GGGGTTTC
*
4802940 -GGTTTTCC
1 GGGGTTT-C
4802948 GGGG-TTC
1 GGGGTTTC
*
4802955 GGCGTTTC
1 GGGGTTTC
4802963 -GGGTTTC
1 GGGGTTTC
*
4802970 GGAGTTTC
1 GGGGTTTC
4802978 GGCAGGGTTTAC
1 -G--GGGTTT-C
4802990 -GGG-TTC
1 GGGGTTTC
* *
4802996 CGGGTTGC
1 GGGGTTTC
* *
4803004 GTGGTATC
1 GGGGTTTC
4803012 --GGTTTCC
1 GGGGTTT-C
*
4803019 GGAGTTTC
1 GGGGTTTC
*
4803027 GGGTTTTC
1 GGGGTTTC
4803035 -GGGTTTC
1 GGGGTTTC
4803042 -GGGTTTC
1 GGGGTTTC
*
4803049 AGGGTTTC
1 GGGGTTTC
4803057 -GGGTTTC
1 GGGGTTTC
* *
4803064 -GTGTGTC
1 GGGGTTTC
4803071 --GGTTTC
1 GGGGTTTC
4803077 -GGGTTTC
1 GGGGTTTC
4803084 GGGCG-TTC
1 GGG-GTTTC
4803092 --GGTTTC
1 GGGGTTTC
*
4803098 -GGGTTGC
1 GGGGTTTC
4803105 -GGGTTTC
1 GGGGTTTC
4803112 -GGG-TTC
1 GGGGTTTC
4803118 --GGTTTC
1 GGGGTTTC
4803124 -GGG-TTC
1 GGGGTTTC
4803130 -GGGTTTC
1 GGGGTTTC
*
4803137 AGGAGTTTC
1 -GGGGTTTC
4803146 -GGGTTTC
1 GGGGTTTC
*
4803153 GGGATTTTC
1 GGG-GTTTC
*
4803162 GGGTTTTC
1 GGGGTTTC
4803170 --GGTTTC
1 GGGGTTTC
*
4803176 GGGTTTTC
1 GGGGTTTC
4803184 -GGGTTTC
1 GGGGTTTC
*
4803191 GGGTTTTC
1 GGGGTTTC
4803199 -GGGTTTC
1 GGGGTTTC
4803206 -GGGTAATTC
1 GGGGT--TTC
4803215 -GGGTTATGC
1 GGGGTT-T-C
*
4803224 GGGATCTTTC
1 GGG--GTTTC
*
4803234 GTGG-TTC
1 GGGGTTTC
* *
4803241 GGAGTGTC
1 GGGGTTTC
4803249 --GG-TTC
1 GGGGTTTC
* *
4803254 GAGTTTTC
1 GGGGTTTC
4803262 --GGTTTC
1 GGGGTTTC
4803268 -GGGTTTC
1 GGGGTTTC
4803275 -GGGTTTCC
1 GGGGTTT-C
*
4803283 AGGGTTTC
1 GGGGTTTC
4803291 -GGG-TTC
1 GGGGTTTC
* *
4803297 GAGGTTGC
1 GGGGTTTC
*
4803305 CGGGTTTC
1 GGGGTTTC
4803313 -GGGTTTC
1 GGGGTTTC
4803320 -GGGTTTC
1 GGGGTTTC
4803327 -GGGTTTC
1 GGGGTTTC
4803334 -GGGTTATC
1 GGGGTT-TC
4803342 --GGTTTC
1 GGGGTTTC
4803348 -GGGTATATC
1 GGGGT-T-TC
4803357 -GGGTATTAC
1 GGGGT-TT-C
* *
4803366 GGGGATGC
1 GGGGTTTC
4803374 -GGGTTTC
1 GGGGTTTC
4803381 -GGGTTTC
1 GGGGTTTC
4803388 -GGGTTTC
1 GGGGTTTC
*
4803395 TCGGG-TTC
1 -GGGGTTTC
4803403 -GGGTTTC
1 GGGGTTTC
* *
4803410 GGAGTTGC
1 GGGGTTTC
*
4803418 -GGGTGTC
1 GGGGTTTC
4803425 GGAGG-TTC
1 GG-GGTTTC
*
4803433 GGGCTATTC
1 GGGGT-TTC
4803442 -GGGTTCTC
1 GGGGTT-TC
4803450 -GGGTTTC
1 GGGGTTTC
4803457 -GGGTTTC
1 GGGGTTTC
**
4803464 GGTATTTC
1 GGGGTTTC
4803472 -GGGTTTC
1 GGGGTTTC
4803479 -GGGTTTC
1 GGGGTTTC
4803486 -GGG-TTC
1 GGGGTTTC
4803492 -GGG-TTC
1 GGGGTTTC
4803498 -GGGTTTC
1 GGGGTTTC
*
4803505 GGGGTATC
1 GGGGTTTC
4803513 GGGGTTTC
1 GGGGTTTC
4803521 -GGGTTTAC
1 GGGGTTT-C
* *
4803529 GGGATGATC
1 GGGGT-TTC
4803538 --GGTTTC
1 GGGGTTTC
4803544 -GGGTTATC
1 GGGGTT-TC
4803552 -GGGTTTC
1 GGGGTTTC
4803559 GGTACGGGTTTC
1 -G---GGGTTTC
4803571 -GGGTTTC
1 GGGGTTTC
*
4803578 GCGGAAATTTC
1 G-GG--GTTTC
*
4803589 -GGGTTGC
1 GGGGTTTC
*
4803596 AGGGTTTC
1 GGGGTTTC
4803604 --GGTTTC
1 GGGGTTTC
4803610 -GGGTTTC
1 GGGGTTTC
4803617 --GGTATTC
1 GGGGT-TTC
4803624 -GGGTTTC
1 GGGGTTTC
4803631 -GGGTTTC
1 GGGGTTTC
4803638 -GGGTTTC
1 GGGGTTTC
*
4803645 GGAG-TTC
1 GGGGTTTC
4803652 -GGGTTTC
1 GGGGTTTC
4803659 -GGGTTTC
1 GGGGTTTC
4803666 -GGGTTTC
1 GGGGTTTC
*
4803673 -GGGTGTC
1 GGGGTTTC
4803680 -GGGTTTC
1 GGGGTTTC
4803687 -GGGTTTC
1 GGGGTTTC
*
4803694 TGGGTATTC
1 GGGGT-TTC
4803703 GGGTTAGGTTTC
1 -GG---GGTTTC
*
4803715 GGGTTTTTCCC
1 GGG-GTTT--C
4803726 GGGGTTTC
1 GGGGTTTC
**
4803734 GGTATTTC
1 GGGGTTTC
4803742 -GGGTTTCC
1 GGGGTTT-C
*
4803750 CGGGTTATC
1 GGGGTT-TC
4803759 -GGGTTTC
1 GGGGTTTC
4803766 -GGGTTTC
1 GGGGTTTC
*
4803773 AGGGATATTC
1 -GGGGT-TTC
4803783 -GGG-TTC
1 GGGGTTTC
*
4803789 -TGGTTTC
1 GGGGTTTC
4803796 -GGGTTTC
1 GGGGTTTC
4803803 GGGGGTTTC
1 -GGGGTTTC
*
4803812 AGGGTTTC
1 GGGGTTTC
4803820 GGGGTATTC
1 GGGGT-TTC
4803829 -GGGTTCTC
1 GGGGTT-TC
*
4803837 -GAGTTTC
1 GGGGTTTC
4803844 -GGGTTTC
1 GGGGTTTC
4803851 --GGTTTC
1 GGGGTTTC
4803857 GGGG-TTC
1 GGGGTTTC
4803864 --GGTTT-
1 GGGGTTTC
4803869 GCGGGTTTC
1 G-GGGTTTC
4803878 -GGGTTTC
1 GGGGTTTC
*
4803885 TGGGATTTC
1 -GGGGTTTC
4803894 -GGGTTCTC
1 GGGGTT-TC
4803902 -GGGTTTC
1 GGGGTTTC
*
4803909 -GTGTTT-
1 GGGGTTTC
*
4803915 GCCGGTTTC
1 G-GGGTTTC
4803924 --GG-TTC
1 GGGGTTTC
4803929 -GGGTTTAC
1 GGGGTTT-C
4803937 -GGGTTATAC
1 GGGGTT-T-C
4803946 -GGGTTTC
1 GGGGTTTC
4803953 --GGTTTC
1 GGGGTTTC
*
4803959 GGGATTTC
1 GGGGTTTC
4803967 -GGGTTTC
1 GGGGTTTC
*
4803974 AGGGTTATC
1 GGGGTT-TC
*
4803983 AGGGTAAATCTC
1 GGGGT---T-TC
*
4803995 AGGGATTATC
1 -GGGGTT-TC
4804005 -GGGTTTC
1 GGGGTTTC
4804012 --GGTTTC
1 GGGGTTTC
4804018 -GGGTTTC
1 GGGGTTTC
4804025 -GGGTTTC
1 GGGGTTTC
** *
4804032 ACGGTTGC
1 GGGGTTTC
4804040 -GGGTTTC
1 GGGGTTTC
4804047 --GGTTTC
1 GGGGTTTC
*
4804053 GGGTTTCTC
1 GGGGTT-TC
*
4804062 TCGGGTTTC
1 -GGGGTTTC
4804071 -GGGTTTC
1 GGGGTTTC
4804078 -GGGTTTC
1 GGGGTTTC
*
4804085 -GGGTGTC
1 GGGGTTTC
4804092 -GGGTTCTC
1 GGGGTT-TC
4804100 -GGGTTTC
1 GGGGTTTC
4804107 -GGGTTTC
1 GGGGTTTC
*
4804114 GGGATTTC
1 GGGGTTTC
4804122 -GGGTATTC
1 GGGGT-TTC
*
4804130 -GGGTTAC
1 GGGGTTTC
*
4804137 GGGTTTTC
1 GGGGTTTC
*
4804145 GGGATTTC
1 GGGGTTTC
*
4804153 -GGGTTAC
1 GGGGTTTC
4804160 -GGGTTTC
1 GGGGTTTC
4804167 -GGGTTTC
1 GGGGTTTC
*
4804174 CGGGTTTC
1 GGGGTTTC
*
4804182 -GGGATTC
1 GGGGTTTC
4804189 -GGGTTTC
1 GGGGTTTC
* *
4804196 GAGGTGTGC
1 GGGGT-TTC
4804205 GGGGTTTC
1 GGGGTTTC
4804213 -GGGTTTC
1 GGGGTTTC
4804220 -GGGTTTC
1 GGGGTTTC
4804227 GAGCTGCGTTTC
1 G-G--G-GTTTC
*
4804239 GAGGTTTC
1 GGGGTTTC
*
4804247 GCGGTTTC
1 GGGGTTTC
*
4804255 GGGTTTTC
1 GGGGTTTC
4804263 -GGG-TTC
1 GGGGTTTC
*
4804269 AGGGTTTC
1 GGGGTTTC
* *
4804277 GGGCTATC
1 GGGGTTTC
4804285 -GGGTAGTTC
1 GGGGT--TTC
*
4804294 GGAG-TT-
1 GGGGTTTC
4804300 -GGGTTTC
1 GGGGTTTC
4804307 --GG-TTC
1 GGGGTTTC
4804312 -GGGTTTC
1 GGGGTTTC
4804319 -GGGTTTC
1 GGGGTTTC
4804326 -GGGTTTAC
1 GGGGTTT-C
*
4804334 AGGGTTTC
1 GGGGTTTC
*
4804342 GAGGTTTTCC
1 G-GGGTTT-C
4804352 GGTTCGG-TTC
1 GG---GGTTTC
**
4804362 GGGGTGGC
1 GGGGTTTC
4804370 -GGGTTTC
1 GGGGTTTC
4804377 -GGG-TTC
1 GGGGTTTC
4804383 GCGGGTTTC
1 G-GGGTTTC
4804392 --GGTTTC
1 GGGGTTTC
*
4804398 -CGGTTT-
1 GGGGTTTC
*
4804404 AGGGTATTC
1 GGGGT-TTC
*
4804413 -GGGTTGC
1 GGGGTTTC
4804420 -GGGTTTC
1 GGGGTTTC
4804427 -GGG-TTC
1 GGGGTTTC
*
4804433 -GTGTTTC
1 GGGGTTTC
*
4804440 -GGGTTGC
1 GGGGTTTC
4804447 -GGGTTTC
1 GGGGTTTC
4804454 GGGGTTTC
1 GGGGTTTC
4804462 -GGGTTTC
1 GGGGTTTC
4804469 -GGGTTT-
1 GGGGTTTC
4804475 -GGGTTTC
1 GGGGTTTC
4804482 -GGGTTTC
1 GGGGTTTC
4804489 -GGG-TTC
1 GGGGTTTC
4804495 GGTCGGGTCTTC
1 -G--GGGT-TTC
4804507 -GGGTTTC
1 GGGGTTTC
4804514 --GG-TTC
1 GGGGTTTC
*
4804519 GGGTTTTC
1 GGGGTTTC
*
4804527 TGGGTTTC
1 GGGGTTTC
4804535 -GGGTATTC
1 GGGGT-TTC
4804543 -GGGTTTC
1 GGGGTTTC
4804550 GGGG-TTC
1 GGGGTTTC
4804557 -GGGTTTC
1 GGGGTTTC
*
4804564 -GGGTTAC
1 GGGGTTTC
4804571 -GGGTTTC
1 GGGGTTTC
4804578 GGGGTATTC
1 GGGGT-TTC
*
4804587 GGGTTTTC
1 GGGGTTTC
4804595 -GGGTATTC
1 GGGGT-TTC
4804603 -GGGTTTC
1 GGGGTTTC
*
4804610 CGGGTTTC
1 GGGGTTTC
*
4804618 -GGATTTC
1 GGGGTTTC
* *
4804625 CGGGTTGC
1 GGGGTTTC
*
4804633 GGAGTTATC
1 GGGGTT-TC
4804642 --GG-TTC
1 GGGGTTTC
*
4804647 GGGTTTTC
1 GGGGTTTC
**
4804655 GGTTTTATTC
1 GG-GGT-TTC
4804665 -GGGTTTC
1 GGGGTTTC
4804672 -GGGTTATC
1 GGGGTT-TC
* *
4804680 GGGATGTC
1 GGGGTTTC
4804688 -GGGTTTC
1 GGGGTTTC
*
4804695 -GGGTATC
1 GGGGTTTC
**
4804702 GGTATTTC
1 GGGGTTTC
*
4804710 GGGTTTTC
1 GGGGTTTC
4804718 -GGG-TTC
1 GGGGTTTC
*
4804724 GCGGTTCTC
1 GGGGTT-TC
4804733 -GGGTTTC
1 GGGGTTTC
*
4804740 GAGG-TTC
1 GGGGTTTC
4804747 -GGGTTTC
1 GGGGTTTC
4804754 -GGGTTTC
1 GGGGTTTC
* *
4804761 GGGATGTC
1 GGGGTTTC
4804769 -GGGTTTC
1 GGGGTTTC
4804776 -GGGTTTC
1 GGGGTTTC
4804783 -GGGTTTC
1 GGGGTTTC
*
4804790 -GGGTATC
1 GGGGTTTC
*
4804797 GGAGTTTAC
1 GGGGTTT-C
*
4804806 -GGTTTATC
1 GGGGTT-TC
4804814 -GGGTTTAC
1 GGGGTTT-C
4804822 -GGG-TTC
1 GGGGTTTC
4804828 -GGGTTTC
1 GGGGTTTC
4804835 GTTCGGGTTTC
1 G---GGGTTTC
4804846 -GGG-TTC
1 GGGGTTTC
4804852 --GGTTTC
1 GGGGTTTC
4804858 GGGGTTTTC
1 GGGG-TTTC
4804867 --GGTTTC
1 GGGGTTTC
4804873 --GGTTTC
1 GGGGTTTC
4804879 -GGGTTTC
1 GGGGTTTC
4804886 -GGGTTTC
1 GGGGTTTC
4804893 --GG-TTC
1 GGGGTTTC
4804898 -GGGTTTC
1 GGGGTTTC
4804905 -GGG-TTC
1 GGGGTTTC
4804911 -GGGTTTC
1 GGGGTTTC
4804918 GGTTCAGG-TTC
1 GG----GGTTTC
4804929 -GGGTTTC
1 GGGGTTTC
4804936 -GGGTTTAC
1 GGGGTTT-C
4804944 --GGTTTC
1 GGGGTTTC
4804950 GGGGTGTTC
1 GGGGT-TTC
*
4804959 GGGTTTTC
1 GGGGTTTC
4804967 -GGGTTTC
1 GGGGTTTC
* *
4804974 GGGATTCC
1 GGGGTTTC
*
4804982 GGGATTTC
1 GGGGTTTC
4804990 GGGG-TT-
1 GGGGTTTC
*
4804996 GCGGTTTC
1 GGGGTTTC
4805004 GGGGTTTC
1 GGGGTTTC
4805012 -GGGTTTC
1 GGGGTTTC
4805019 -GGGTTTC
1 GGGGTTTC
*
4805026 AGGG-TTC
1 GGGGTTTC
*
4805033 GAGGTTTC
1 GGGGTTTC
4805041 --GGTTTC
1 GGGGTTTC
4805047 --GGTTTC
1 GGGGTTTC
*
4805053 GGGTGATTC
1 GGG-GTTTC
*
4805062 GCGGTTTC
1 GGGGTTTC
*
4805070 CGGGTTTC
1 GGGGTTTC
*
4805078 AGGGTTTC
1 GGGGTTTC
4805086 -GGGTTTC
1 GGGGTTTC
4805093 -GGGTTTC
1 GGGGTTTC
*
4805100 GGAG-TTC
1 GGGGTTTC
4805107 GGGGTATTC
1 GGGGT-TTC
*
4805116 GGGTTTTC
1 GGGGTTTC
*
4805124 GGAGTTTC
1 GGGGTTTC
4805132 -GGGTTTC
1 GGGGTTTC
*
4805139 GGAGTATTC
1 GGGGT-TTC
*
4805148 GGGATCTT-
1 GGGGT-TTC
4805156 GCGGG-TTC
1 G-GGGTTTC
4805164 --GGTTTC
1 GGGGTTTC
4805170 GGGGGTTTC
1 -GGGGTTTC
4805179 -GGGTTTC
1 GGGGTTTC
4805186 -GGGTTTC
1 GGGGTTTC
4805193 -GGGTTTC
1 GGGGTTTC
4805200 -GGGTTTC
1 GGGGTTTC
4805207 ---GTTTC
1 GGGGTTTC
4805212 GGGG-TTC
1 GGGGTTTC
4805219 -GGGTATTC
1 GGGGT-TTC
*
4805227 -GGGTTCGCC
1 GGGGTT--TC
4805236 GGGGGGTTT-
1 --GGGGTTTC
4805245 GCGGGTTT-
1 G-GGGTTTC
4805253 --GGTTTC
1 GGGGTTTC
4805259 --GGTTTC
1 GGGGTTTC
4805265 ---GTTT-
1 GGGGTTTC
4805269 GCGGGTTTC
1 G-GGGTTTC
4805278 --GGTTTC
1 GGGGTTTC
4805284 --GGTTTC
1 GGGGTTTC
4805290 --GGTTTC
1 GGGGTTTC
*
4805296 AGGAGTTTC
1 -GGGGTTTC
4805305 -GGGTTTC
1 GGGGTTTC
4805312 -GGG-TTC
1 GGGGTTTC
*
4805318 GGGTTTTC
1 GGGGTTTC
*
4805326 AGGGCATTTC
1 -GGG-GTTTC
4805336 -GGGTTTC
1 GGGGTTTC
4805343 -GGGTTTC
1 GGGGTTTC
*
4805350 GGAGTTTC
1 GGGGTTTC
4805358 --GGTTTC
1 GGGGTTTC
*
4805364 AGGG-TTC
1 GGGGTTTC
*
4805371 AGGAGTTTAC
1 -GGGGTTT-C
*
4805381 AGGGTTTC
1 GGGGTTTC
*
4805389 -GGGTTGC
1 GGGGTTTC
*
4805396 AGGGTTGTC
1 GGGGTT-TC
**
4805405 GGGGTGGC
1 GGGGTTTC
4805413 -GGGTCTTC
1 GGGGT-TTC
4805421 -GGGTTTC
1 GGGGTTTC
*
4805428 GGGTTTTC
1 GGGGTTTC
4805436 -GGGTTTC
1 GGGGTTTC
4805443 GGGGTATTCTAC
1 GGGG--TT-T-C
*
4805455 TCGGGTTATC
1 -GGGGTT-TC
4805465 -GGGTTTC
1 GGGGTTTC
4805472 --GGTTTC
1 GGGGTTTC
*
4805478 AGGGTATTC
1 GGGGT-TTC
4805487 -GGGTTTC
1 GGGGTTTC
4805494 -GGG-TTC
1 GGGGTTTC
4805500 -GGGTTTC
1 GGGGTTTC
*
4805507 -GGGTGTC
1 GGGGTTTC
4805514 -GGGTATTC
1 GGGGT-TTC
*
4805522 AGGGTTTC
1 GGGGTTTC
4805530 -GGGTTTC
1 GGGGTTTC
4805537 -GGGTTTCC
1 GGGGTTT-C
*
4805545 TCGGGTTTC
1 -GGGGTTTC
4805554 --GGTTTC
1 GGGGTTTC
4805560 -GGGTATTC
1 GGGGT-TTC
*
4805568 AGGGTTTC
1 GGGGTTTC
4805576 --GGTTTC
1 GGGGTTTC
*
4805582 GGAGTTTC
1 GGGGTTTC
*
4805590 -GGGTGTC
1 GGGGTTTC
4805597 -GGGTTTC
1 GGGGTTTC
*
4805604 -GGGTTGC
1 GGGGTTTC
4805611 -GGG-TT-
1 GGGGTTTC
*
4805616 GCGGTTTC
1 GGGGTTTC
4805624 -GGGTTTC
1 GGGGTTTC
4805631 -GGG-TT-
1 GGGGTTTC
4805636 GGGGTTTTC
1 GGGG-TTTC
4805645 -GGGTTTC
1 GGGGTTTC
4805652 GGGGTTTC
1 GGGGTTTC
4805660 --GGTTTCC
1 GGGGTTT-C
*
4805667 GGGATTTC
1 GGGGTTTC
4805675 -GGG-TTC
1 GGGGTTTC
*
4805681 --GG-TTA
1 GGGGTTTC
4805686 GCGGGTTTC
1 G-GGGTTTC
4805695 -GGGTTTCC
1 GGGGTTT-C
4805703 GGGGTTTC
1 GGGGTTTC
**
4805711 ACGG-TTC
1 GGGGTTTC
*
4805718 GAGGATTTC
1 G-GGGTTTC
4805727 -GGGTATATC
1 GGGGT-T-TC
4805736 -GGGTTTC
1 GGGGTTTC
4805743 --GGTTTAC
1 GGGGTTT-C
*
4805750 -GGGTTAC
1 GGGGTTTC
*
4805757 GGGTTCTTC
1 GGGGT-TTC
4805766 -GGGTTTC
1 GGGGTTTC
4805773 -GGGTTTC
1 GGGGTTTC
*
4805780 CGGGTTTC
1 GGGGTTTC
*
4805788 -GGGTGTC
1 GGGGTTTC
*
4805795 GGGTCTTTTC
1 GGG--GTTTC
4805805 -GGGTATTC
1 GGGGT-TTC
4805813 -GGGTTT-
1 GGGGTTTC
4805819 -GGGTTTC
1 GGGGTTTC
*
4805826 AGGGTTTC
1 GGGGTTTC
*
4805834 -GGGTGTC
1 GGGGTTTC
4805841 -GGGTTT-
1 GGGGTTTC
* *
4805847 GGAGATTC
1 GGGGTTTC
4805855 -GGGTTTC
1 GGGGTTTC
4805862 -GGGTTT-
1 GGGGTTTC
*
4805868 GCGGTTTAC
1 GGGGTTT-C
4805877 -GGGTATTC
1 GGGGT-TTC
4805885 -GGGTTTC
1 GGGGTTTC
4805892 -GGGTTTC
1 GGGGTTTC
*
4805899 CGGGTTTC
1 GGGGTTTC
4805907 -GGGTTTC
1 GGGGTTTC
*
4805914 CGGG-TTC
1 GGGGTTTC
*
4805921 CGGGTCATTC
1 GGGGT--TTC
*
4805931 GGAGTTTC
1 GGGGTTTC
*
4805939 GGAAGTTTC
1 GG-GGTTTC
4805948 -GGG--TC
1 GGGGTTTC
4805953 -GGGTTTC
1 GGGGTTTC
*
4805960 GGAGTTTTC
1 GG-GGTTTC
*
4805969 GGAGTTTC
1 GGGGTTTC
4805977 -GGGTTTC
1 GGGGTTTC
4805984 -GGGTTTC
1 GGGGTTTC
*
4805991 GGCGTTTC
1 GGGGTTTC
4805999 -GGGTTT-
1 GGGGTTTC
* *
4806005 AGGGTGTC
1 GGGGTTTC
**
4806013 GGTTTTATC
1 GGGGTT-TC
*
4806022 -GTGTTTC
1 GGGGTTTC
*
4806029 GGAGTTATC
1 GGGGTT-TC
*
4806038 AGGCGTTTC
1 -GGGGTTTC
**
4806047 TTCGGTTTC
1 -GGGGTTTC
4806056 -GGGTAATCTC
1 GGGGT--T-TC
4806066 -GGGTTTCC
1 GGGGTTT-C
4806074 GGCGG-TTC
1 GG-GGTTTC
4806082 -GGGTTTC
1 GGGGTTTC
4806089 -GGGTTTC
1 GGGGTTTC
*
4806096 GGGTTTTC
1 GGGGTTTC
4806104 GCGGGTTTC
1 G-GGGTTTC
4806113 --GGTTTC
1 GGGGTTTC
*
4806119 AGGG-TTC
1 GGGGTTTC
4806126 GGGG--TC
1 GGGGTTTC
4806132 -GGGTTTC
1 GGGGTTTC
4806139 -GGGTTTC
1 GGGGTTTC
4806146 -GGGTTTC
1 GGGGTTTC
4806153 GGGG--T-
1 GGGGTTTC
*
4806158 GCGGTTTC
1 GGGGTTTC
4806166 -GGGTTTC
1 GGGGTTTC
4806173 --GGTTTC
1 GGGGTTTC
4806179 -GGGTTTC
1 GGGGTTTC
*
4806186 GGAGTTTC
1 GGGGTTTC
4806194 --GGTTTC
1 GGGGTTTC
4806200 -GGGTTTC
1 GGGGTTTC
4806207 -GGGTATTC
1 GGGGT-TTC
*
4806215 GAGGTTTC
1 GGGGTTTC
4806223 -GGGTAACTTAC
1 GGGGT---TT-C
4806234 -GGG-TTC
1 GGGGTTTC
*
4806240 ACGGGTTTC
1 -GGGGTTTC
**
4806249 CAGGTTTC
1 GGGGTTTC
*
4806257 AAGGGTTTC
1 -GGGGTTTC
4806266 -GGGTTTC
1 GGGGTTTC
4806273 GGGGGTTTTC
1 -GGGG-TTTC
*
4806283 GAGGTATTTC
1 G-GG-GTTTC
4806293 -GGG-TTC
1 GGGGTTTC
4806299 GGGG-TTC
1 GGGGTTTC
4806306 -GGGTTTC
1 GGGGTTTC
4806313 -GGGTTTC
1 GGGGTTTC
4806320 --GGTTTC
1 GGGGTTTC
4806326 -GGGTTATC
1 GGGGTT-TC
4806334 ----TTTC
1 GGGGTTTC
*
4806338 AGGG-TTC
1 GGGGTTTC
*
4806345 GGGATTTATC
1 GGG-GTT-TC
4806355 -GGGTTTC
1 GGGGTTTC
*
4806362 GAGG--T-
1 GGGGTTTC
4806367 GGCGG-TTC
1 GG-GGTTTC
4806375 -GGGTTTC
1 GGGGTTTC
*
4806382 GGAGTTTTC
1 GG-GGTTTC
*
4806391 GGCGTCTTC
1 GGGGT-TTC
4806400 -GGGTTTC
1 GGGGTTTC
4806407 -GGGTTTC
1 GGGGTTTC
*
4806414 GGCGTTTC
1 GGGGTTTC
4806422 GGGGTTTC
1 GGGGTTTC
4806430 -GGGTTTAC
1 GGGGTTT-C
4806438 -GGGTTTC
1 GGGGTTTC
4806445 -GGGTTTC
1 GGGGTTTC
*
4806452 GGAG-TTC
1 GGGGTTTC
*
4806459 -AGGTTTC
1 GGGGTTTC
4806466 --GGTTTC
1 GGGGTTTC
4806472 -GGGTTT-
1 GGGGTTTC
*
4806478 GCGG-TTC
1 GGGGTTTC
4806485 -GGGTTTC
1 GGGGTTTC
4806492 -GGGTTTC
1 GGGGTTTC
4806499 GGGG-TTC
1 GGGGTTTC
*
4806506 CGGGTTTAC
1 GGGGTTT-C
4806515 -GGGTTTC
1 GGGGTTTC
*
4806522 GGGTATTTC
1 GGG-GTTTC
4806531 --GGTTTAC
1 GGGGTTT-C
*
4806538 GGGTTTTC
1 GGGGTTTC
4806546 -GGGTTTC
1 GGGGTTTC
4806553 -GGGTTTC
1 GGGGTTTC
4806560 -GGGTTTC
1 GGGGTTTC
*
4806567 GGGATTTC
1 GGGGTTTC
* *
4806575 GGGATTGC
1 GGGGTTTC
4806583 -GGGTTTC
1 GGGGTTTC
4806590 -GGGTTTC
1 GGGGTTTC
*
4806597 AGGGTTTC
1 GGGGTTTC
4806605 -GGGTTTC
1 GGGGTTTC
*
4806612 AGGGTTTC
1 GGGGTTTC
*
4806620 GAGGTATATC
1 GGGGT-T-TC
*
4806630 --GCTTTC
1 GGGGTTTC
4806636 -GGG-TTC
1 GGGGTTTC
4806642 -GGGTATATC
1 GGGGT-T-TC
*
4806651 CGGGTTTC
1 GGGGTTTC
4806659 GGGGTTTC
1 GGGGTTTC
*
4806667 -GTGTTTC
1 GGGGTTTC
*
4806674 -GGG-TTG
1 GGGGTTTC
4806680 GCGGGTTT-
1 G-GGGTTTC
* *
4806688 AGGGTGTC
1 GGGGTTTC
4806696 GGGG-TTC
1 GGGGTTTC
4806703 --GGTTATC
1 GGGGTT-TC
4806710 --GGTTTC
1 GGGGTTTC
4806716 -GGGTTTC
1 GGGGTTTC
*
4806723 CGGGTTTC
1 GGGGTTTC
4806731 -GGGTTTCC
1 GGGGTTT-C
*
4806739 AGGAGTTTC
1 -GGGGTTTC
* *
4806748 AGGGTATC
1 GGGGTTTC
4806756 -GGGTTTC
1 GGGGTTTC
4806763 -GGGTTTC
1 GGGGTTTC
*
4806770 GGGTTTTC
1 GGGGTTTC
4806778 -GGGTTTC
1 GGGGTTTC
*
4806785 GGGTTTTC
1 GGGGTTTC
4806793 -GGGTTTC
1 GGGGTTTC
4806800 -GGGTTTC
1 GGGGTTTC
4806807 -GGGTTTC
1 GGGGTTTC
4806814 -GGGTTTC
1 GGGGTTTC
4806821 -GGGTTT-
1 GGGGTTTC
4806827 GCGGG-TTC
1 G-GGGTTTC
4806835 --GGTTTC
1 GGGGTTTC
4806841 -GGGTTTC
1 GGGGTTTC
4806848 -GGGTTT-
1 GGGGTTTC
*
4806854 GGGATTTC
1 GGGGTTTC
4806862 --GGTTTC
1 GGGGTTTC
4806868 -GGGTTTC
1 GGGGTTTC
4806875 -GGG-TTC
1 GGGGTTTC
*
4806881 GAGGTTTC
1 GGGGTTTC
4806889 -GGGTTTC
1 GGGGTTTC
*
4806896 GGAGTTTTC
1 GG-GGTTTC
4806905 -GGG-TTC
1 GGGGTTTC
*
4806911 CGGGTATTC
1 GGGGT-TTC
4806920 -GGGTTTC
1 GGGGTTTC
4806927 -GGGTTTC
1 GGGGTTTC
4806934 -GGGTTTC
1 GGGGTTTC
*
4806941 GGGATTTTC
1 GGG-GTTTC
*
4806950 -GGGTGTC
1 GGGGTTTC
4806957 --GGTTTC
1 GGGGTTTC
4806963 --GGTTTC
1 GGGGTTTC
4806969 -GGGTTTC
1 GGGGTTTC
4806976 GCGGGTTTC
1 G-GGGTTTC
4806985 -GGG-TTC
1 GGGGTTTC
4806991 -GGGTTATC
1 GGGGTT-TC
4806999 -GGG-TTC
1 GGGGTTTC
*
4807005 -GGGTTGC
1 GGGGTTTC
*
4807012 GGGAATTTC
1 GGG-GTTTC
*
4807021 CGGGTTTC
1 GGGGTTTC
4807029 -GGG--TC
1 GGGGTTTC
4807034 -GGGTTTC
1 GGGGTTTC
4807041 -GGGTTATC
1 GGGGTT-TC
4807049 -GGGTTTC
1 GGGGTTTC
4807056 -GGGTTT-
1 GGGGTTTC
*
4807062 AGGGTTTC
1 GGGGTTTC
4807070 --GG-TTC
1 GGGGTTTC
4807075 GGGG-TTC
1 GGGGTTTC
4807082 -GGGTTTC
1 GGGGTTTC
4807089 GGGGTTTC
1 GGGGTTTC
4807097 GGTTTGGTTTC
1 GG---GGTTTC
4807108 -GGGTATTC
1 GGGGT-TTC
4807116 -GGG-TTC
1 GGGGTTTC
*
4807122 GGGTTTTAC
1 GGGGTTT-C
4807131 -GGGTTTC
1 GGGGTTTC
4807138 GGGG--TC
1 GGGGTTTC
*
4807144 -GGGTGTC
1 GGGGTTTC
*
4807151 GGCGTTTC
1 GGGGTTTC
4807159 -GGGTTTC
1 GGGGTTTC
4807166 --GGTTTC
1 GGGGTTTC
4807172 -GGG-TTC
1 GGGGTTTC
4807178 --GGTATTC
1 GGGGT-TTC
*
4807185 -GGGTGTC
1 GGGGTTTC
4807192 -GGGTTTC
1 GGGGTTTC
*
4807199 GGGTTGTTC
1 GGGGT-TTC
4807208 -GGGTTTC
1 GGGGTTTC
4807215 --GGTTTC
1 GGGGTTTC
*
4807221 GGGTTTTC
1 GGGGTTTC
4807229 GGGAG--TC
1 GGG-GTTTC
*
4807236 -GGGTATC
1 GGGGTTTC
4807243 -GGGTTATC
1 GGGGTT-TC
*
4807251 -GGGTTAC
1 GGGGTTTC
4807258 -GGGTTTC
1 GGGGTTTC
*
4807265 AGGG-TTC
1 GGGGTTTC
4807272 -GGGTTT-
1 GGGGTTTC
* *
4807278 AGGGTGTC
1 GGGGTTTC
*
4807286 -GGGTTGC
1 GGGGTTTC
*
4807293 -CGGTATTC
1 GGGGT-TTC
*
4807301 CGGGTTTC
1 GGGGTTTC
4807309 -GGG-TTC
1 GGGGTTTC
* *
4807315 AGGTTTTC
1 GGGGTTTC
*
4807323 CGGGTTTC
1 GGGGTTTC
4807331 -GGG-TTC
1 GGGGTTTC
4807337 -GGGTTTC
1 GGGGTTTC
4807344 -GGGTTTC
1 GGGGTTTC
*
4807351 GGAG-TTC
1 GGGGTTTC
*
4807358 GGAGTTTC
1 GGGGTTTC
**
4807366 AAGGTTATC
1 GGGGTT-TC
4807375 -GGG-TTC
1 GGGGTTTC
4807381 -GGG-TTC
1 GGGGTTTC
*
4807387 GGGTTTTC
1 GGGGTTTC
4807395 -GGGTTTC
1 GGGGTTTC
*
4807402 GGGATTTC
1 GGGGTTTC
4807410 --GGTTTC
1 GGGGTTTC
4807416 -GGGTTTC
1 GGGGTTTC
4807423 -GGGTTTC
1 GGGGTTTC
4807430 -GGGTTTC
1 GGGGTTTC
4807437 -GGG-TTC
1 GGGGTTTC
4807443 -GGGTTTC
1 GGGGTTTC
4807450 -GGGTTTC
1 GGGGTTTC
* *
4807457 GAGGTTGC
1 GGGGTTTC
4807465 -GGGTTTC
1 GGGGTTTC
4807472 -GGGTTTC
1 GGGGTTTC
*
4807479 GGGTTTTC
1 GGGGTTTC
4807487 -GGGTTATC
1 GGGGTT-TC
4807495 GGGGTTTTC
1 GGGG-TTTC
4807504 GGGGTTTC
1 GGGGTTTC
*
4807512 GAGAGTTTC
1 G-GGGTTTC
4807521 -GGGTTTC
1 GGGGTTTC
*
4807528 --GG-TTG
1 GGGGTTTC
4807533 GGGGTTTC
1 GGGGTTTC
4807541 --GGTTTC
1 GGGGTTTC
4807547 -GGGTTATC
1 GGGGTT-TC
4807555 -GGGTTTCC
1 GGGGTTT-C
*
4807563 GGGTTTTC
1 GGGGTTTC
4807571 GTTCGGAG-TTC
1 G---GG-GTTTC
*
4807582 GGGATTTCC
1 GGGGTTT-C
*
4807591 GAGGTTTC
1 GGGGTTTC
*
4807599 GAGGTTTC
1 GGGGTTTC
4807607 GGGGTTTC
1 GGGGTTTC
4807615 -GGGTTTC
1 GGGGTTTC
4807622 -GGGTTTC
1 GGGGTTTC
4807629 -GGG--T-
1 GGGGTTTC
*
4807633 GGCGGTTGC
1 GG-GGTTTC
4807642 -GGG-TTC
1 GGGGTTTC
4807648 -GGGTTTCC
1 GGGGTTT-C
**
4807656 GGCTTTTC
1 GGGGTTTC
*
4807664 -GGGTTTAA
1 GGGGTTT-C
*
4807672 GGAGTTTC
1 GGGGTTTC
4807680 -GGGTTTC
1 GGGGTTTC
*
4807687 CGGGTTTC
1 GGGGTTTC
4807695 -GGGTTTC
1 GGGGTTTC
4807702 -GGGTTTC
1 GGGGTTTC
4807709 -GGGTTTC
1 GGGGTTTC
4807716 -GGGTTTC
1 GGGGTTTC
4807723 -GGGTTTCC
1 GGGGTTT-C
*
4807731 GGAGTTTC
1 GGGGTTTC
4807739 GG
1 GG
4807741 TTCTCCTCTC
Statistics
Matches: 5872, Mismatches: 577, Indels: 1640
0.73 0.07 0.20
Matches are distributed among these distances:
4 5 0.00
5 116 0.02
6 750 0.13
7 2709 0.46
8 1396 0.24
9 593 0.10
10 179 0.03
11 81 0.01
12 34 0.01
13 9 0.00
ACGTcount: A:0.05, C:0.12, G:0.44, T:0.39
Consensus pattern (8 bp):
GGGGTTTC
Found at i:4805264 original size:6 final size:6
Alignment explanation
Indices: 4805248--4805319 Score: 67
Period size: 6 Copynumber: 11.3 Consensus size: 6
4805238 GGGGTTTGCG
4805248 GGTTT- GGTTTC GGTTTC -GTTTGC GGGTTTC GGTTTC GGTTTC GGTTTC
1 GGTTTC GGTTTC GGTTTC GGTTT-C -GGTTTC GGTTTC GGTTTC GGTTTC
*
4805296 AGGAGTTTC GGGTTTC GGGTTC GG
1 --G-GTTTC -GGTTTC GGTTTC GG
4805320 GTTTTCAGGG
Statistics
Matches: 59, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
5 9 0.15
6 32 0.54
7 6 0.10
8 7 0.12
9 5 0.08
ACGTcount: A:0.03, C:0.14, G:0.39, T:0.44
Consensus pattern (6 bp):
GGTTTC
Found at i:4807843 original size:8 final size:7
Alignment explanation
Indices: 4807827--4807934 Score: 78
Period size: 7 Copynumber: 14.4 Consensus size: 7
4807817 TCACGCACCA
4807827 CCCCT-C
1 CCCCTCC
*
4807833 CCCCTCT
1 CCCCTCC
4807840 CCCC-CC
1 CCCCTCC
4807846 CCCCTCC
1 CCCCTCC
4807853 CCGCATCTCCC
1 CC-C--CT-CC
4807864 CCCCTCAC
1 CCCCTC-C
4807872 CACCCTCCC
1 C-CCCT-CC
4807881 CCCCTCC
1 CCCCTCC
4807888 CCCACTCC
1 CCC-CTCC
4807896 CCCCTCC
1 CCCCTCC
*
4807903 TCCCC-GC
1 -CCCCTCC
*
4807910 CCCCGCC
1 CCCCTCC
4807917 CCCCTCC
1 CCCCTCC
4807924 CACCCTCC
1 C-CCCTCC
4807932 CCC
1 CCC
4807935 ACCAGACAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 25
0.74 0.04 0.22
Matches are distributed among these distances:
6 14 0.17
7 29 0.35
8 27 0.32
9 6 0.07
10 4 0.05
11 4 0.05
ACGTcount: A:0.05, C:0.80, G:0.03, T:0.13
Consensus pattern (7 bp):
CCCCTCC
Found at i:4807854 original size:18 final size:18
Alignment explanation
Indices: 4807827--4807934 Score: 71
Period size: 18 Copynumber: 5.9 Consensus size: 18
4807817 TCACGCACCA
*
4807827 CCCCTCCCCCTCTCCCCCC
1 CCCCT-CCCCGCTCCCCCC
*
4807846 CCCCTCCCCGCAT-CTCCC
1 CCCCTCCCCGC-TCCCCCC
* * *
4807864 CCCCTCACCAC-CCTCCC
1 CCCCTCCCCGCTCCCCCC
*
4807881 CCCCTCCCC-CACTCCCCC
1 CCCCTCCCCGCTC-CCCCC
*
4807899 CTCCTCCCCGC-CCCCGCC
1 CCCCTCCCCGCTCCCC-CC
*
4807917 CCCCTCCCACCCTCCCCC
1 CCCCTCCC-CGCTCCCCC
4807935 ACCAGACAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
16 1 0.01
17 17 0.24
18 40 0.56
19 10 0.14
20 4 0.06
ACGTcount: A:0.05, C:0.80, G:0.03, T:0.13
Consensus pattern (18 bp):
CCCCTCCCCGCTCCCCCC
Found at i:4807881 original size:16 final size:16
Alignment explanation
Indices: 4807843--4807936 Score: 81
Period size: 15 Copynumber: 5.9 Consensus size: 16
4807833 CCCCTCTCCC
4807843 CCCCCCCTCCCCGCATCT
1 CCCCCCCTCCCC-CA-CT
4807861 CCCCCCCTCACCACC-CT
1 CCCCCCCTC-CC-CCACT
4807878 CCCCCCCTCCCCCACT
1 CCCCCCCTCCCCCACT
*
4807894 -CCCCCCTCCTCC-C-
1 CCCCCCCTCCCCCACT
* *
4807907 CGCCCCCGCCCCC-CT
1 CCCCCCCTCCCCCACT
*
4807922 CCCACCCTCCCCCAC
1 CCCCCCCTCCCCCAC
4807937 CAGACAAACG
Statistics
Matches: 63, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
14 11 0.17
15 23 0.37
16 5 0.08
17 11 0.17
18 9 0.14
19 3 0.05
20 1 0.02
ACGTcount: A:0.06, C:0.79, G:0.03, T:0.12
Consensus pattern (16 bp):
CCCCCCCTCCCCCACT
Found at i:4807919 original size:53 final size:53
Alignment explanation
Indices: 4807827--4807934 Score: 148
Period size: 53 Copynumber: 2.0 Consensus size: 53
4807817 TCACGCACCA
* * *
4807827 CCCCTCCCCCTCTCCCCCCCCCCTCCCCGCATCTCCCCCCCTCACCACCCTCCC
1 CCCCTCCCCCACTCCCCCCCCCCTCCCCGCACCCCCCCCCCTC-CCACCCTCCC
*
4807881 CCCCTCCCCCACT-CCCCCCTCCTCCCCGC-CCCCGCCCCCCTCCCACCCTCCC
1 CCCCTCCCCCACTCCCCCCCCCCTCCCCGCACCCC-CCCCCCTCCCACCCTCCC
4807933 CC
1 CC
4807935 ACCAGACAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
52 14 0.29
53 23 0.47
54 12 0.24
ACGTcount: A:0.05, C:0.80, G:0.03, T:0.13
Consensus pattern (53 bp):
CCCCTCCCCCACTCCCCCCCCCCTCCCCGCACCCCCCCCCCTCCCACCCTCCC
Found at i:4807983 original size:5 final size:6
Alignment explanation
Indices: 4807968--4808045 Score: 75
Period size: 6 Copynumber: 12.5 Consensus size: 6
4807958 CCCGCCATAC
** ** * *
4807968 CCCCCT CCCCCT CCCCCCT CCCCAA CTACCG CCCCCT CCCCCC CCCCCT
1 CCCCCT CCCCCT -CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT
4808017 CCCCCT CCCCCCT CCCCGCT CCCCCT CCC
1 CCCCCT -CCCCCT CCCC-CT CCCCCT CCC
4808046 GGCTCCC
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
6 40 0.69
7 18 0.31
ACGTcount: A:0.04, C:0.81, G:0.03, T:0.13
Consensus pattern (6 bp):
CCCCCT
Found at i:4807985 original size:13 final size:13
Alignment explanation
Indices: 4807951--4808045 Score: 95
Period size: 13 Copynumber: 6.8 Consensus size: 13
4807941 CAAACGCAAA
4807951 CCCCCCTCCCGCCAT
1 CCCCCCTCCC-CC-T
4807966 ACCCCCCTCCCCCT
1 -CCCCCCTCCCCCT
4807980 CCCCCCTCCCCAACT
1 CCCCCCTCCCC--CT
4807995 ACCGCCCCCTCCCCC-
1 --C-CCCCCTCCCCCT
4808010 CCCCCCTCCCCCT
1 CCCCCCTCCCCCT
4808023 CCCCCCTCCCCGCT
1 CCCCCCTCCCC-CT
4808037 -CCCCCTCCC
1 CCCCCCTCCC
4808046 GGCTCCC
Statistics
Matches: 72, Mismatches: 0, Indels: 17
0.81 0.00 0.19
Matches are distributed among these distances:
12 11 0.15
13 32 0.44
14 3 0.04
15 4 0.06
16 11 0.15
17 1 0.01
18 10 0.14
ACGTcount: A:0.05, C:0.79, G:0.03, T:0.13
Consensus pattern (13 bp):
CCCCCCTCCCCCT
Found at i:4808050 original size:13 final size:12
Alignment explanation
Indices: 4807999--4808052 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
4807989 CCAACTACCG
* *
4807999 CCCCCTCCCCCC
1 CCCCCTCCCGCT
*
4808011 CCCCCTCCCCCT
1 CCCCCTCCCGCT
4808023 CCCCCCTCCCCGCT
1 -CCCCCT-CCCGCT
4808037 CCCCCTCCCGGCT
1 CCCCCTCCC-GCT
4808050 CCC
1 CCC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
12 14 0.38
13 18 0.49
14 5 0.14
ACGTcount: A:0.00, C:0.81, G:0.06, T:0.13
Consensus pattern (12 bp):
CCCCCTCCCGCT
Found at i:4808052 original size:20 final size:20
Alignment explanation
Indices: 4807952--4808045 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 20
4807942 AAACGCAAAC
*
4807952 CCCCCTCCCGCCATACCCCCCT
1 CCCCCTCCC-CCCT-CCCCCCT
*
4807974 CCCCCTCCCCCCTCCCCAACT
1 CCCCCTCCCCCCTCCCC-CCT
*
4807995 ACCGCCC-CCTCCCCCCCCCCCT
1 -CC-CCCTCC-CCCCTCCCCCCT
*
4808017 CCCCCTCCCCCCTCCCCGCT
1 CCCCCTCCCCCCTCCCCCCT
4808037 CCCCCTCCC
1 CCCCCTCCC
4808046 GGCTCCC
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
20 26 0.43
21 9 0.15
22 15 0.25
23 11 0.18
ACGTcount: A:0.05, C:0.79, G:0.03, T:0.13
Consensus pattern (20 bp):
CCCCCTCCCCCCTCCCCCCT
Done.