Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold361
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 329584
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:188327 original size:76 final size:76
Alignment explanation
Indices: 188247--188513 Score: 245
Period size: 75 Copynumber: 3.5 Consensus size: 76
188237 TTTTTGGCTA
* * * *
188247 TTAATAAAAACTTTAGAAATCACATATTTCCAATCATGTTTCTTTCCTAAAGCCCGTTATTAGTT
1 TTAATAAAAATTTTAGAAATCACATATTCCCTATCATGTTTCTTTCCTAAAGCCCATTATTAGTT
*
188312 TGTTTCGATTG
66 TGTTTCGACTG
* * * ** * *
188323 TTAAT-GAAATTTTAGAAATCACATATTCCCTATGATGTTCCTTTCCTTCCA-CTCATTACTAGT
1 TTAATAAAAATTTTAGAAATCACATATTCCCTATCATGTTTCTTTCC-TAAAGCCCATTATTAGT
* *
188386 TTGTTTTGGCTG
65 TTGTTTCGACTG
* * ** * *
188398 TTGATAAAAATTTTCGAAATCACATATTCCCTATCATG-TTCTTTCCTTTAGCCAATTATCAGTT
1 TTAATAAAAATTTTAGAAATCACATATTCCCTATCATGTTTCTTTCCTAAAGCCCATTATTAGTT
* * **
188462 TATTTCAACCA
66 TGTTTCGACTG
* * *
188473 TTGATAAAAATTTTAGAAACCACATATTTCCC-ATTATGTTT
1 TTAATAAAAATTTTAGAAATCACATA-TTCCCTATCATGTTT
188514 TTCTTCTCTA
Statistics
Matches: 152, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
74 2 0.01
75 107 0.70
76 43 0.28
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (76 bp):
TTAATAAAAATTTTAGAAATCACATATTCCCTATCATGTTTCTTTCCTAAAGCCCATTATTAGTT
TGTTTCGACTG
Found at i:189067 original size:40 final size:40
Alignment explanation
Indices: 189023--189098 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
189013 ATGTGTCAGC
*
189023 TTTATCTTGGTCAACCTTTTAAATTTATTAACTTGTCAAT
1 TTTATCCTGGTCAACCTTTTAAATTTATTAACTTGTCAAT
** * * *
189063 TTTATCCTGGTCAGTCTTTTTAATTTGTTGACTTGT
1 TTTATCCTGGTCAACCTTTTAAATTTATTAACTTGT
189099 TGGTTTCTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (40 bp):
TTTATCCTGGTCAACCTTTTAAATTTATTAACTTGTCAAT
Found at i:189162 original size:80 final size:80
Alignment explanation
Indices: 189053--189270 Score: 208
Period size: 80 Copynumber: 2.7 Consensus size: 80
189043 AAATTTATTA
* ** ** * *
189053 ACTTGTCAATTTTATC-CTGGTCAGTCTTTTTAATTTGTTGACTTGTTGGTTTCTTCCCG-GTCA
1 ACTTGTCAATTTTATCTC-AGTCAACCTTTTTAATTTGTTGACTTGTCAGTTTCATCCCGACT-A
** * *
189116 ATTTTTTTAACTTGTTG
64 ACCTCTTTAACATGTTG
* * * *
189133 ACTTGTCGATTTTATCTC-GATTAACCTTTTTAACTTGTTGACTTGTCAGTTTCATCTCGACTAA
1 ACTTGTCAATTTTATCTCAG-TCAACCTTTTTAATTTGTTGACTTGTCAGTTTCATCCCGACTAA
189197 CCTCTTTAACATGTTG
65 CCTCTTTAACATGTTG
* * * * *
189213 ACTTGTTAATTTTATCTCAGTCAACTTTTTTAATTTATTGACTTGTCAATTTTATCCC
1 ACTTGTCAATTTTATCTCAGTCAACCTTTTTAATTTGTTGACTTGTCAGTTTCATCCC
189271 AACCATTCTC
Statistics
Matches: 111, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
79 1 0.01
80 107 0.96
81 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (80 bp):
ACTTGTCAATTTTATCTCAGTCAACCTTTTTAATTTGTTGACTTGTCAGTTTCATCCCGACTAAC
CTCTTTAACATGTTG
Found at i:189163 original size:40 final size:40
Alignment explanation
Indices: 189119--189268 Score: 185
Period size: 40 Copynumber: 3.8 Consensus size: 40
189109 CCGGTCAATT
*
189119 TTTTTAACTTGTTGACTTGTCGATTTTATCTCGATTAACC
1 TTTTTAACTTGTTGACTTGTCAATTTTATCTCGATTAACC
* * *
189159 TTTTTAACTTGTTGACTTGTCAGTTTCATCTCGACTAACC
1 TTTTTAACTTGTTGACTTGTCAATTTTATCTCGATTAACC
* * * * *
189199 TCTTTAACATGTTGACTTGTTAATTTTATCTC-AGTCAACT
1 TTTTTAACTTGTTGACTTGTCAATTTTATCTCGA-TTAACC
* *
189239 TTTTTAATTTATTGACTTGTCAATTTTATC
1 TTTTTAACTTGTTGACTTGTCAATTTTATC
189269 CCAACCATTC
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 91 0.99
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (40 bp):
TTTTTAACTTGTTGACTTGTCAATTTTATCTCGATTAACC
Found at i:189282 original size:80 final size:80
Alignment explanation
Indices: 189121--189304 Score: 199
Period size: 80 Copynumber: 2.3 Consensus size: 80
189111 GGTCAATTTT
* * * *
189121 TTTAACTTGTTGACTTGTCGATTTTATCTCGATTAACCTTTTTAACTTGTTGACTTGTCAGTTTC
1 TTTAACTTGTTGACTTGTCAATTTTATCTCGATCAACCTTTTTAACTTATTGACTTGTCAATTTC
* * *
189186 ATCTCGACTAACCTC
66 ATCCCAACCAACCTC
* * * *
189201 TTTAACATGTTGACTTGTTAATTTTATCTC-AGTCAACTTTTTTAATTTATTGACTTGTCAATTT
1 TTTAACTTGTTGACTTGTCAATTTTATCTCGA-TCAACCTTTTTAACTTATTGACTTGTCAATTT
* **
189265 TATCCCAACCATTCTC
65 CATCCCAACCAACCTC
* * *
189281 TTCAACTTGTTGACATGCCAATTT
1 TTTAACTTGTTGACTTGTCAATTT
189305 CGTCTTTGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
79 1 0.01
80 83 0.99
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (80 bp):
TTTAACTTGTTGACTTGTCAATTTTATCTCGATCAACCTTTTTAACTTATTGACTTGTCAATTTC
ATCCCAACCAACCTC
Found at i:189629 original size:66 final size:63
Alignment explanation
Indices: 189453--190017 Score: 295
Period size: 66 Copynumber: 8.8 Consensus size: 63
189443 TTGGTTTTGC
* * * * * * *
189453 CTTTTT-ACTCAGGTTTCACCTTATTCACTTTTGGTTGACTTCATTGATTTCACCCTAATCAACC
1 CTTTTTGACTTAGGTTTCACCTTAGTCAC-TTTAGTTGACTTTATTGGTTT-GCCC-AGTCAACC
*
189517 C
63 T
* ** * * * *
189518 CATTTCAACTTAGGTTTCACTTTAGTCACTTTTAGTTAATTTTATTAGTTCTGACCCAGTCAACC
1 CTTTTTGACTTAGGTTTCACCTTAGTCAC-TTTAGTTGACTTTATTGGTT-TG-CCCAGTCAACC
189583 T
63 T
* * * *
189584 CTTTTTGACTTAGGTTT-AGCCTTGGTCATCTTTCGTTGACTTTATTGGTTTCTCCCTAATCAAC
1 CTTTTTGACTTAGGTTTCA-CCTTAGTCA-CTTTAGTTGACTTTATTGGTTT-GCCC-AGTCAAC
189648 CT
62 CT
* ** *
189650 CTTTTCGAC-TAGGTTTCATATTAGTCGTA-TTTAGTTGACTTTATTGGTTTTGCCCTGGTCAA-
1 CTTTTTGACTTAGGTTTCACCTTAGTC--ACTTTAGTTGACTTTATTGG-TTTGCCC-AGTCAAC
189712 --
62 CT
* * ** * * *
189712 C--TTTG----A--TTTCGCCTTGGTCATCTTTTTTTAACTTTATTAGTTTAGCCTAGTCAACC-
1 CTTTTTGACTTAGGTTTCACCTTAGTCA-CTTTAGTTGACTTTATTGGTTT-GCCCAGTCAACCT
* * *
189768 CATTTTTTACTTTGGTTTCACCTTAGTCACTTTTAGTTGA-TTTCATTGGTTTCACCCTAGTCAA
1 C-TTTTTGACTTAGGTTTCACCTTAGTCAC-TTTAGTTGACTTT-ATTGGTTT-GCCC-AGTCAA
189832 CC-
61 CCT
** * **
189834 CTATTTTGACTTAGGTTTCATTTTTGTCACTTTTAGTTGACTTTATTGGTTTTGCCTTGGTCAAC
1 CT-TTTTGACTTAGGTTTCACCTTAGTCAC-TTTAGTTGACTTTATTGG-TTTGCC-CAGTCAAC
*
189899 TT
62 CT
* ** * * * *
189901 CTTTTTGACTTAAGTTTTGCCTTGGTCACCCTTCGTTGACTTTATTGGTTTCGCCTTAGTCAACC
1 CTTTTTGACTTAGGTTTCACCTTAGTCA-CTTTAGTTGACTTTATTGGTTT-GCC-CAGTCAACC
189966 T
63 T
* *
189967 -TTTTTCGACTTAGGTTTCACCATAGTCACTTTTAGTTGACTTTATTAGTTT
1 CTTTTT-GACTTAGGTTTCACCTTAGTCAC-TTTAGTTGACTTTATTGGTTT
190018 TGCCTTGGTC
Statistics
Matches: 381, Mismatches: 82, Indels: 73
0.71 0.15 0.14
Matches are distributed among these distances:
53 1 0.00
54 8 0.02
55 26 0.07
56 1 0.00
57 1 0.00
59 3 0.01
60 3 0.01
62 1 0.00
64 4 0.01
65 83 0.22
66 235 0.62
67 15 0.04
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (63 bp):
CTTTTTGACTTAGGTTTCACCTTAGTCACTTTAGTTGACTTTATTGGTTTGCCCAGTCAACCT
Found at i:189872 original size:186 final size:186
Alignment explanation
Indices: 189553--189900 Score: 451
Period size: 185 Copynumber: 1.9 Consensus size: 186
189543 TCACTTTTAG
* * *
189553 TTAATTTTATTAGTTCTGACCCAGTCAACCTCTTTTTGACTTAGGTTTAGCCTTGGTCATCTTTC
1 TTAACTTTATTAGTTCTGACCCAGTCAACCTCTTTTTGACTTAGGTTTAGCCTTAGTCATCTTTA
* *
189618 GTTGACTTTATTGGTTTCTCCCTAATCAACCTCTTTTCGACTAGGTTTCATATTAGTCGTATTTA
66 GTTGACTTTATTGGTTTCACCCTAATCAACCTCTTTTCGACTAGGTTTCATATTAGTCCTATTTA
189683 GTTGACTTTATTGGTTTTGCCCTGGTCAACTTTGATTTCGCCTTGGTCATCTTTTT
131 GTTGACTTTATTGGTTTTGCCCTGGTCAACTTTGATTTCGCCTTGGTCATCTTTTT
* * *
189739 TTAACTTTATTAGTT-T-AGCCTAGTCAACC-CATTTTTTACTTTGGTTTCA-CCTTAGTCA-CT
1 TTAACTTTATTAGTTCTGA-CCCAGTCAACCTC-TTTTTGACTTAGGTTT-AGCCTTAGTCATC-
* * * *
189799 TTTAGTTGA-TTTCATTGGTTTCACCCTAGTCAACC-CTATTTTGACTTAGGTTTCATTTTTGTC
62 TTTAGTTGACTTT-ATTGGTTTCACCCTAATCAACCTCT-TTTCGAC-TAGGTTTCATATTAGTC
*
189862 ACT-TTTAGTTGACTTTATTGGTTTTGCCTTGGTCAACTT
124 -CTATTTAGTTGACTTTATTGGTTTTGCCCTGGTCAACTT
189901 CTTTTTGACT
Statistics
Matches: 141, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
184 8 0.06
185 67 0.48
186 65 0.46
187 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.48
Consensus pattern (186 bp):
TTAACTTTATTAGTTCTGACCCAGTCAACCTCTTTTTGACTTAGGTTTAGCCTTAGTCATCTTTA
GTTGACTTTATTGGTTTCACCCTAATCAACCTCTTTTCGACTAGGTTTCATATTAGTCCTATTTA
GTTGACTTTATTGGTTTTGCCCTGGTCAACTTTGATTTCGCCTTGGTCATCTTTTT
Found at i:189983 original size:32 final size:31
Alignment explanation
Indices: 189751--189994 Score: 86
Period size: 32 Copynumber: 7.5 Consensus size: 31
189741 AACTTTATTA
* *
189751 GTTTAGCC-TAGTCAACCCATTTTTT-ACTTTG
1 GTTTCGCCTTAGTCAA-CC-TTTTTTGACTTAG
* *
189782 GTTTCACCTTAGTC-A-CTTTTAGTTGATTTCATTG
1 GTTTCGCCTTAGTCAACCTTTT--TTGACTT-A--G
* * *
189816 GTTTCACCCTAGTCAACCCTATTTTGACTTAG
1 GTTTCGCCTTAGTCAA-CCTTTTTTGACTTAG
*** *
189848 GTTTCATTTTTGTC-A-CTTTTAGTTGACTTTATTG
1 GTTTCGCCTTAGTCAACCTTTT--TTGAC-TTA--G
* * * *
189882 GTTTTGCCTTGGTCAACTTCTTTTTGACTTAA
1 GTTTCGCCTTAGTCAACCT-TTTTTGACTTAG
* * * **
189914 GTTTTGCCTTGGTCACCCTTCGTTGACTTTATTG
1 GTTTCGCCTTAGTCAACCTTTTTTGAC-TTA--G
189948 GTTTCGCCTTAGTCAACCTTTTTTCGACTTAG
1 GTTTCGCCTTAGTCAACCTTTTTT-GACTTAG
* *
189980 GTTTCACCATAGTCA
1 GTTTCGCCTTAGTCA
189995 CTTTTAGTTG
Statistics
Matches: 160, Mismatches: 31, Indels: 43
0.68 0.13 0.18
Matches are distributed among these distances:
28 4 0.03
29 5 0.03
30 2 0.01
31 22 0.14
32 53 0.33
34 50 0.31
35 16 0.10
36 1 0.01
37 7 0.04
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (31 bp):
GTTTCGCCTTAGTCAACCTTTTTTGACTTAG
Found at i:190023 original size:66 final size:66
Alignment explanation
Indices: 189742--190028 Score: 296
Period size: 66 Copynumber: 4.4 Consensus size: 66
189732 TCTTTTTTTA
* * *
189742 ACTTTATTAGTTTAGCC-TAGTCAACCCATTTTTT-ACTTTGGTTTCACCTTAGTCACTTTTAGT
1 ACTTTATTGGTTTCGCCTTAGTCAACCC-TTTTTTGACTTAGGTTTCACCTTAGTCACTTTTAGT
189805 TG
65 TG
* * * ** *
189807 A-TTTCATTGGTTTCACCCTAGTCAACCCTATTTTGACTTAGGTTTCATTTTTGTCACTTTTAGT
1 ACTTT-ATTGGTTTCGCCTTAGTCAACCCTTTTTTGACTTAGGTTTCACCTTAGTCACTTTTAGT
189871 TG
65 TG
* * * * ** * ** *
189873 ACTTTATTGGTTTTGCCTTGGTCAA-CTTCTTTTTGACTTAAGTTTTGCCTTGGTCACCCTTCGT
1 ACTTTATTGGTTTCGCCTTAGTCAACCCT-TTTTTGACTTAGGTTTCACCTTAGTCACTTTTAGT
189937 TG
65 TG
*
189939 ACTTTATTGGTTTCGCCTTAGTCAA-CCTTTTTTCGACTTAGGTTTCACCATAGTCACTTTTAGT
1 ACTTTATTGGTTTCGCCTTAGTCAACCCTTTTTT-GACTTAGGTTTCACCTTAGTCACTTTTAGT
190003 TG
65 TG
* * *
190005 ACTTTATTAGTTTTGCCTTGGTCA
1 ACTTTATTGGTTTCGCCTTAGTCA
190029 TCTTTTGTTC
Statistics
Matches: 179, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
64 3 0.02
65 22 0.12
66 151 0.84
67 3 0.02
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (66 bp):
ACTTTATTGGTTTCGCCTTAGTCAACCCTTTTTTGACTTAGGTTTCACCTTAGTCACTTTTAGTT
G
Found at i:190043 original size:34 final size:33
Alignment explanation
Indices: 189859--190051 Score: 139
Period size: 34 Copynumber: 5.8 Consensus size: 33
189849 TTTCATTTTT
*
189859 GTCACTTTTAGTTGACTTTATTGGTTTTGCCTTG
1 GTCACTTTT-GTTGACTTTATTAGTTTTGCCTTG
*
189893 GTCAACTTCTTTTTGAC-TTA--AGTTTTGCCTTG
1 GTC-ACTT-TTGTTGACTTTATTAGTTTTGCCTTG
* * * * *
189925 GTCACCCTTCGTTGACTTTATTGGTTTCGCCTTA
1 GTCA-CTTTTGTTGACTTTATTAGTTTTGCCTTG
* ** * *
189959 GTCAACCTTTT-TTCGAC-TTA--GGTTTCACCATA
1 GTC-A-CTTTTGTT-GACTTTATTAGTTTTGCCTTG
189991 GTCACTTTTAGTTGACTTTATTAGTTTTGCCTTG
1 GTCACTTTT-GTTGACTTTATTAGTTTTGCCTTG
*
190025 GTCATCTTTTGTTCACTTTATTAGTTT
1 GTCA-CTTTTGTTGACTTTATTAGTTT
190052 CGTCCTAGTC
Statistics
Matches: 127, Mismatches: 18, Indels: 28
0.73 0.10 0.16
Matches are distributed among these distances:
30 5 0.04
31 11 0.09
32 37 0.29
34 50 0.39
35 22 0.17
36 2 0.02
ACGTcount: A:0.15, C:0.19, G:0.16, T:0.50
Consensus pattern (33 bp):
GTCACTTTTGTTGACTTTATTAGTTTTGCCTTG
Found at i:190045 original size:166 final size:166
Alignment explanation
Indices: 189859--190184 Score: 406
Period size: 166 Copynumber: 2.0 Consensus size: 166
189849 TTTCATTTTT
* * * * * * *
189859 GTCACTTTTAGTTGACTTTATTGGTTTTG-CCTTGGTCAACTTCTTTTTGACTTAAGTTTTGCCT
1 GTCACTTTTAGTTCACTTTATTAGTTTCGTCC-TAGTCAACCTCTTTTTAACTTAAGCTTTGCCT
* * * *
189923 TGGTCACCCTTCGTTGACTTTATTGGTTTCGCCTTAGTCAACCTT-TTTTCGACTTAGGTTTCAC
65 TGGTCACCCTTCGTTAACTTTATTGCTTTCACCTTAGTCAA-CTTCTTTTCAACTTAGGTTTCAC
* *
189987 CATAGTCACTTTTAGTTGACTTTATTAGTTTTGCCTTG
129 CATAATCACTTTTAATTGACTTTATTAGTTTTGCCTTG
*
190025 GTCATCTTTT-GTTCACTTTATTAGTTTCGTCCTAGTCAACCTCTTTTTAACTTATGCTTTGCCT
1 GTCA-CTTTTAGTTCACTTTATTAGTTTCGTCCTAGTCAACCTCTTTTTAACTTAAGCTTTGCCT
* * * * *
190089 TGGTCACCCTTCGTTAACTTTTTTGCTTTCACCTTGGTCAATTTCTTTTCAATTTAGGTTTCATC
65 TGGTCACCCTTCGTTAACTTTATTGCTTTCACCTTAGTCAACTTCTTTTCAACTTAGGTTTCACC
* * *
190154 TTAATCACTTTTAATTGACTTTCTTGGTTTT
130 ATAATCACTTTTAATTGACTTTATTAGTTTT
190185 ACCCAAGTTA
Statistics
Matches: 135, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
165 2 0.01
166 126 0.93
167 7 0.05
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.50
Consensus pattern (166 bp):
GTCACTTTTAGTTCACTTTATTAGTTTCGTCCTAGTCAACCTCTTTTTAACTTAAGCTTTGCCTT
GGTCACCCTTCGTTAACTTTATTGCTTTCACCTTAGTCAACTTCTTTTCAACTTAGGTTTCACCA
TAATCACTTTTAATTGACTTTATTAGTTTTGCCTTG
Found at i:190095 original size:100 final size:96
Alignment explanation
Indices: 189884--190095 Score: 223
Period size: 100 Copynumber: 2.1 Consensus size: 96
189874 CTTTATTGGT
* * *
189884 TTTGCCTTGGTCAACTTCTTTTTGACTTAAGTTTTGCCTTGGTCACCCTTCGTTGACTTTATTGG
1 TTTGCCTTGGTC-ACTTCTTGTTGACTTAAGTTTTGCCTTGGTCACCCTTCGTTCACTTTATTAG
* *
189949 TTTCGCCTTAGTCAACCTTTTTTCGACTTAGG
65 TTTCGCCTTAGTCAACCTTTTTTCAACTTAGC
* * * * * *
189981 TTTCACCATAGTCACTT-TTAGTTGACTTTATTAGTTTTGCCTTGGTCATCTTTTGTTCACTTTA
1 TTT-GCCTTGGTCACTTCTT-GTTGAC-TTA--AGTTTTGCCTTGGTCACCCTTCGTTCACTTTA
190045 TTAGTTTCGTCC-TAGTCAACCTCTTTTT-AACTTATGC
61 TTAGTTTCG-CCTTAGTCAACCT-TTTTTCAACTTA-GC
190082 TTTGCCTTGGTCAC
1 TTTGCCTTGGTCAC
190096 CCTTCGTTAA
Statistics
Matches: 93, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
96 2 0.02
97 12 0.13
98 9 0.10
100 59 0.63
101 11 0.12
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (96 bp):
TTTGCCTTGGTCACTTCTTGTTGACTTAAGTTTTGCCTTGGTCACCCTTCGTTCACTTTATTAGT
TTCGCCTTAGTCAACCTTTTTTCAACTTAGC
Found at i:190215 original size:66 final size:67
Alignment explanation
Indices: 190142--191086 Score: 515
Period size: 66 Copynumber: 14.3 Consensus size: 67
190132 TCTTTTCAAT
* * * * *
190142 TTAGGTTTCATCTTAATCACTTTTAATTGACTTTC-TTGGTTTTACCCAAGTTAACT-TTTTTTC
1 TTAGGTTTCACCTTAATCACTTTTAATTGAC-TTCATTGGTTTTGCCCTAGTCAACTCTATTTTC
190205 GAC
65 GAC
* * * * *
190208 ATAGGTTTCGCCCTAATCACCTTTT-GTTGACTTCATTGGTTTTGCCCTAGTCAA-TCTCTTTTC
1 TTAGGTTTCACCTTAATCA-CTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTC
190271 GAC
65 GAC
* * * * *
190274 TTAGGTTTCACCTTAGTAACTTTTAGTTGACTTCATTGGTTTCGCCCTAGTCAACTCCATTTT-G
1 TTAGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTCG
190338 AC
66 AC
* * * * * * *
190340 TTAGGTTTCACCTTAGTCATTTTTAATTGACTTTATTGGTTTTGCCTTTGTCAACT-TCTTTTCA
1 TTAGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTCG
190404 AC
66 AC
** * * * * *
190406 TTAGGTTTCACCTTGGTCA-TCTTATGTTGAC-TCTATTGGTTTTACCTTAGTCAACT-TCTTTT
1 TTAGGTTTCACCTTAATCACTTTTA-ATTGACTTC-ATTGGTTTTGCCCTAGTCAACTCTATTTT
*
190468 CAAC
64 CGAC
* * * * * * * *
190472 TTAGGTTTCACCTTAGTCGCATTTAGTTGACTTTATTAGTTTTGCCCTGGTCAATTTCT-TTTT-
1 TTAGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAA-CTCTATTTTC
*
190535 TAC
65 GAC
* * * * ** * * *
190538 TTCA-GTTTCGCCCTATTCAATTTTTGTTGACTTTATTGGTTTTGCCATAGGT-AAC-CTCTTTT
1 TT-AGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTA-GTCAACTCTATTTT
*
190600 CAAC
64 CGAC
** * ** * * * ** *
190604 TTAGGTTTTGCCCTAATCACCCTTAATTGACTTTATTAGTCTCACCCTAGTTAACCTCT-TTTT-
1 TTAGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAA-CTCTATTTTC
190667 GAC
65 GAC
* * * * * * * * * *
190670 TTAAGTTTCACCTTAGTCATTTTTAGTTGGCTTTATTGGTTTTTCCTTAGTCAA-TTTCTTTTCG
1 TTAGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTCG
190734 AC
66 AC
** * ** * * * ** * * *
190736 TTAGGTTTTGCCCTGGTCACCCTTT-ATTGACTTTATTAGTTTCACCTTGGTCAAC-CTGTTTTC
1 TTAGGTTTCACCTTAATCA-CTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTC
*
190799 CAC
65 GAC
* * * ** * *
190802 TTAGGTTTC-CTCTTAGTCACTTTTAGTTAACTTCATTGGTTTCACCCTGGTCAACCCTA-TTTC
1 TTAGGTTTCAC-CTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTC
190865 GAC
65 GAC
* * *
190868 TTAGGTTTCACCTTAGTCACGTTTAGTTGACTTCAGTT-GTTTTGCCCTAGTCAACTTCT-TTTT
1 TTAGGTTTCACCTTAATCACTTTTAATTGACTTCA-TTGGTTTTGCCCTAGTCAAC-TCTATTTT
*
190931 -AAC
64 CGAC
** ** * ** * * * *
190934 TTATATTTTGCCCTGGTCATCTTTT-ATTGACTTTATTGGTTTCGCTCTGGTCAAC-CTCA-TTT
1 TTAGGTTTCACCTTAATCA-CTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCT-ATTTT
*
190996 CAAC
64 CGAC
* * * * * * *
191000 TTAGGTTTTCACCTTAGTCATTTTTAGTTGACTTTATTGGTTTTACCCTGGTCAACT-TCTTTTC
1 TTAGG-TTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTC
191064 GAC
65 GAC
* *
191067 TTAGGTTTCGCCTTAGTCAC
1 TTAGGTTTCACCTTAATCAC
191087 CCATTAATTA
Statistics
Matches: 692, Mismatches: 147, Indels: 80
0.75 0.16 0.09
Matches are distributed among these distances:
64 6 0.01
65 39 0.06
66 551 0.80
67 93 0.13
68 3 0.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.47
Consensus pattern (67 bp):
TTAGGTTTCACCTTAATCACTTTTAATTGACTTCATTGGTTTTGCCCTAGTCAACTCTATTTTCG
AC
Found at i:190249 original size:34 final size:34
Alignment explanation
Indices: 190211--190329 Score: 122
Period size: 34 Copynumber: 3.6 Consensus size: 34
190201 TTTCGACATA
* *
190211 GGTTTCGCCCTAATCACCTTTTGTTGACTTCATT
1 GGTTTCGCCCTAGTCAACTTTTGTTGACTTCATT
* *
190245 GGTTTTGCCCTAGTCAATCTCTTT-TCGACTT-A--
1 GGTTTCGCCCTAGTCAA-CT-TTTGTTGACTTCATT
* *
190277 GGTTTCACCTTAGT-AACTTTTAGTTGACTTCATT
1 GGTTTCGCCCTAGTCAACTTTT-GTTGACTTCATT
190311 GGTTTCGCCCTAGTCAACT
1 GGTTTCGCCCTAGTCAACT
190330 CCATTTTGAC
Statistics
Matches: 67, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
29 3 0.04
30 2 0.03
31 8 0.12
32 12 0.18
34 27 0.40
35 12 0.18
36 3 0.04
ACGTcount: A:0.17, C:0.24, G:0.16, T:0.43
Consensus pattern (34 bp):
GGTTTCGCCCTAGTCAACTTTTGTTGACTTCATT
Found at i:190297 original size:132 final size:132
Alignment explanation
Indices: 190125--191086 Score: 706
Period size: 132 Copynumber: 7.3 Consensus size: 132
190115 TTTCACCTTG
* * * * * * *
190125 GTCAATTTCTTTTCAATTTAGGTTTCATCTTAATCACTTTTAATTGACTTTCTTGGTTTTACCCA
1 GTCAATCTCTTTTCAACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTTATTGGTTTTACCCT
* * * * ** * *
190190 AGTTAACTTTTTTTCGACATAGGTTTCGCCCTAATCACCTTTTGTTGACTTCATTGGTTTTGCCC
66 AGTCAACTTTTTTTCGACTTAGGTTTCACCCTAGTCACCTTTAATTGACTTTATTAGTTTTGCCC
190255 TA
131 TA
* * * **
190257 GTCAATCTCTTTTCGACTTAGGTTTCACCTTAGTAACTTTTAGTTGACTTCATTGGTTTCGCCCT
1 GTCAATCTCTTTTCAACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTTATTGGTTTTACCCT
** * ** *
190322 AGTCAACTCCATTTT-GACTTAGGTTTCACCTTAGTCATTTTTAATTGACTTTATTGGTTTTGCC
66 AGTCAACT-TTTTTTCGACTTAGGTTTCACCCTAGTCACCTTTAATTGACTTTATTAGTTTTGCC
* *
190386 TTT
130 CTA
* * *
190389 GTCAA-CTTCTTTTCAACTTAGGTTTCACCTTGGTCA-TCTTATGTTGACTCTATTGGTTTTACC
1 GTCAATC-TCTTTTCAACTTAGGTTTCACCTTAGTCACTTTTA-GTTGACTTTATTGGTTTTACC
* * * * * * *
190452 TTAGTCAACTTCTTTTCAACTTAGGTTTCACCTTAGTCGCATTTAGTTGACTTTATTAGTTTTGC
64 CTAGTCAACTTTTTTTCGACTTAGGTTTCACCCTAGTCACCTTTAATTGACTTTATTAGTTTTGC
*
190517 CCTG
129 CCTA
* ** * * * * * * *
190521 GTCAATTTCTTTTTTACTTCA-GTTTCGCCCTATTCAATTTTTGTTGACTTTATTGGTTTTGCCA
1 GTCAATCTCTTTTCAACTT-AGGTTTCACCTTAGTCACTTTTAGTTGACTTTATTGGTTTTACCC
* * * ** * * * **
190585 TAGGT-AACCTCTTTTCAACTTAGGTTTTGCCCTAATCACCCTTAATTGACTTTATTAGTCTCAC
65 TA-GTCAACTTTTTTTCGACTTAGGTTTCACCCTAGTCACCTTTAATTGACTTTATTAGTTTTGC
190649 CCTA
129 CCTA
* * ** * * * * *
190653 GTTAACCTCTTTTTGACTTAAGTTTCACCTTAGTCATTTTTAGTTGGCTTTATTGGTTTTTCCTT
1 GTCAATCTCTTTTCAACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTTATTGGTTTTACCCT
** * **
190718 AGTCAA-TTTCTTTTCGACTTAGGTTTTGCCCTGGTCACCCTTT-ATTGACTTTATTAGTTTCAC
66 AGTCAACTTT-TTTTCGACTTAGGTTTCACCCTAGTCA-CCTTTAATTGACTTTATTAGTTTTGC
* *
190781 CTTG
129 CCTA
* * * * * *
190785 GTCAACCTGTTTTCCACTTAGGTTTC-CTCTTAGTCACTTTTAGTTAACTTCATTGGTTTCACCC
1 GTCAATCTCTTTTCAACTTAGGTTTCAC-CTTAGTCACTTTTAGTTGACTTTATTGGTTTTACCC
* ** * * * * *
190849 TGGTCAACCCTATTTCGACTTAGGTTTCACCTTAGTCACGTTTAGTTGACTTCAGTT-GTTTTGC
65 TAGTCAACTTTTTTTCGACTTAGGTTTCACCCTAGTCACCTTTAATTGACTTTA-TTAGTTTTGC
190913 CCTA
129 CCTA
* ** ** * * ** *
190917 GTCAA-CTTCTTTTTAACTTATATTTTGCCCTGGTCATCTTTTA-TTGACTTTATTGGTTTCGCT
1 GTCAATC-TCTTTTCAACTTAGGTTTCACCTTAGTCA-CTTTTAGTTGACTTTATTGGTTTTACC
* * ** * * ** * * *
190980 CTGGTCAACCTCATTTCAACTTAGGTTTTCACCTTAGTCATTTTTAGTTGACTTTATTGGTTTTA
64 CTAGTCAACTTTTTTTCGACTTAGG-TTTCACCCTAGTCACCTTTAATTGACTTTATTAGTTTTG
*
191045 CCCTG
128 CCCTA
* *
191050 GTCAA-CTTCTTTTCGACTTAGGTTTCGCCTTAGTCAC
1 GTCAATC-TCTTTTCAACTTAGGTTTCACCTTAGTCAC
191087 CCATTAATTA
Statistics
Matches: 664, Mismatches: 145, Indels: 42
0.78 0.17 0.05
Matches are distributed among these distances:
131 19 0.03
132 556 0.84
133 89 0.13
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.47
Consensus pattern (132 bp):
GTCAATCTCTTTTCAACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTTATTGGTTTTACCCT
AGTCAACTTTTTTTCGACTTAGGTTTCACCCTAGTCACCTTTAATTGACTTTATTAGTTTTGCCC
TA
Found at i:190357 original size:32 final size:32
Alignment explanation
Indices: 190266--190489 Score: 129
Period size: 32 Copynumber: 6.8 Consensus size: 32
190256 AGTCAATCTC
190266 TTTTCGACTTAGGTTTCACCTTAGT-AACTT--
1 TTTT-GACTTAGGTTTCACCTTAGTCAACTTCA
* * *
190296 TTAGTTGACTTCATTGGTTTCGCCCTAGTCAACTCCA
1 TT--TTGACTT-A--GGTTTCACCTTAGTCAACTTCA
** *
190333 TTTTGACTTAGGTTTCACCTTAGTCATTTTTA
1 TTTTGACTTAGGTTTCACCTTAGTCAACTTCA
* ** *
190365 -ATTGACTTTATTGGTTTTGCCTTTGTCAACTTC-
1 TTTTGAC-TTA--GGTTTCACCTTAGTCAACTTCA
* * *
190398 TTTTCAACTTAGGTTTCACCTTGGTCATCTT-A
1 TTTT-GACTTAGGTTTCACCTTAGTCAACTTCA
* *
190430 TGTTGACTCTATTGGTTTTACCTTAGTCAACTTC-
1 TTTTGACT-TA--GGTTTCACCTTAGTCAACTTCA
*
190464 TTTTCAACTTAGGTTTCACCTTAGTC
1 TTTT-GACTTAGGTTTCACCTTAGTC
190490 GCATTTAGTT
Statistics
Matches: 145, Mismatches: 30, Indels: 36
0.69 0.14 0.17
Matches are distributed among these distances:
30 2 0.01
31 13 0.09
32 57 0.39
34 55 0.38
35 16 0.11
37 2 0.01
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (32 bp):
TTTTGACTTAGGTTTCACCTTAGTCAACTTCA
Found at i:190413 original size:198 final size:195
Alignment explanation
Indices: 190200--191086 Score: 877
Period size: 198 Copynumber: 4.5 Consensus size: 195
190190 AGTTAACTTT
* * * * * *
190200 TTTTCGACATAGGTTTCGCCCTAATCACCTTTTGTTGACTTCATTGGTTTTGCCCTAGTCAATCT
1 TTTTCAACTTAGGTTTCACCTTAGTCA-CTTTTGTTGACTTCATTGGTTTTACCCTAGTCAA-CT
* *
190265 CTTTTCGACTTAGGTTTCACCTTAGTAACTTTTAGTTGACTTCATTGGTTTCGCCCTAGTCAACT
64 CTTTTCGACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTCATTGGTTTTGCCCTAGTCAACT
* * * * *
190330 CCATTTTGACTTAGGTTTCACCTTAGTCATTTTTAATTGACTTTATTGGTTTTGCCTTTGTCAAC
129 TCTTTTTGACTTAGGTTTCGCCCTAGTCATTTTT-ATTGACTTTATTGGTTTTGCCTTGGTCAAC
*
190395 TTC
193 CTC
* * *
190398 TTTTCAACTTAGGTTTCACCTTGGTCATCTTATGTTGAC-TCTATTGGTTTTACCTTAGTCAACT
1 TTTTCAACTTAGGTTTCACCTTAGTCA-CTTTTGTTGACTTC-ATTGGTTTTACCCTAGTCAAC-
* * * * * * *
190462 TCTTTTCAACTTAGGTTTCACCTTAGTCGCATTTAGTTGACTTTATTAGTTTTGCCCTGGTCAAT
63 TCTTTTCGACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTCATTGGTTTTGCCCTAGTCAAC
* * * *
190527 TTCTTTTTTACTTCA-GTTTCGCCCTATTCAATTTTTGTTGACTTTATTGGTTTTGCCATAGGT-
128 TTCTTTTTGACTT-AGGTTTCGCCCTAGTC-ATTTTTATTGACTTTATTGGTTTTGCC-TTGGTC
190590 AACCTC
190 AACCTC
** * * * ** * * * * *
190596 TTTTCAACTTAGGTTTTGCCCTAATCACCCTTAATTGACTTTATTAGTCTCACCCTAGTTAACCT
1 TTTTCAACTTAGGTTTCACCTTAGTCA-CTTTTGTTGACTTCATTGGTTTTACCCTAGTCAA-CT
* * * * * * * *
190661 CTTTTTGACTTAAGTTTCACCTTAGTCATTTTTAGTTGGCTTTATTGGTTTTTCCTTAGTCAATT
64 CTTTTCGACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTCATTGGTTTTGCCCTAGTCAACT
* * * ** * **
190726 TCTTTTCGACTTAGGTTTTGCCCTGGTCACCCTTTATTGACTTTATTAGTTTCACCTTGGTCAAC
129 TCTTTTTGACTTAGGTTTCGCCCTAGTCA-TTTTTATTGACTTTATTGGTTTTGCCTTGGTCAAC
*
190791 CTG
193 CTC
* * * * *
190794 TTTTCCACTTAGGTTTC-CTCTTAGTCACTTTTAGTTAACTTCATTGGTTTCACCCTGGTCAACC
1 TTTTCAACTTAGGTTTCAC-CTTAGTCACTTTT-GTTGACTTCATTGGTTTTACCCTAGTCAACT
*
190858 CTATTTCGACTTAGGTTTCACCTTAGTCACGTTTAGTTGACTTCAGTT-GTTTTGCCCTAGTCAA
64 CT-TTTCGACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTCA-TTGGTTTTGCCCTAGTCAA
* ** * * *
190922 CTTCTTTTTAACTTATATTTTGCCCTGGTCATCTTTTATTGACTTTATTGGTTTCG-CTCTGGTC
127 CTTCTTTTTGACTTAGGTTTCGCCCTAGTCAT-TTTTATTGACTTTATTGGTTTTGCCT-TGGTC
190986 AACCTC
190 AACCTC
* * * *
190992 ATTTCAACTTAGGTTTTCACCTTAGTCATTTTTAGTTGACTTTATTGGTTTTACCCTGGTCAACT
1 TTTTCAACTTAGG-TTTCACCTTAGTCACTTTT-GTTGACTTCATTGGTTTTACCCTAGTCAAC-
*
191057 TCTTTTCGACTTAGGTTTCGCCTTAGTCAC
63 TCTTTTCGACTTAGGTTTCACCTTAGTCAC
191087 CCATTAATTA
Statistics
Matches: 561, Mismatches: 109, Indels: 37
0.79 0.15 0.05
Matches are distributed among these distances:
197 18 0.03
198 456 0.81
199 84 0.15
200 3 0.01
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (195 bp):
TTTTCAACTTAGGTTTCACCTTAGTCACTTTTGTTGACTTCATTGGTTTTACCCTAGTCAACTCT
TTTCGACTTAGGTTTCACCTTAGTCACTTTTAGTTGACTTCATTGGTTTTGCCCTAGTCAACTTC
TTTTTGACTTAGGTTTCGCCCTAGTCATTTTTATTGACTTTATTGGTTTTGCCTTGGTCAACCTC
Found at i:191283 original size:69 final size:68
Alignment explanation
Indices: 191145--191314 Score: 231
Period size: 69 Copynumber: 2.5 Consensus size: 68
191135 AACTTATTGA
* *
191145 TTTCACCTTAGTCAACCCCATTTCGACTTAGG-T-TTCACCTTAGTCACTTTTAGTTGACTTTAT
1 TTTCACCCTAGTCAAACCCATTTCGACTTAGGTTCTTCACCTTAGTCACTTTTAGTTGACTTTAT
*
191208 TGG
66 TAG
*
191211 TTTCACCCTAGTCAAACCCATTTCGACTTAGAGTTCTTCA-CTCTAGTCACTTTTGGTTGACTTT
1 TTTCACCCTAGTCAAACCCATTTCGACTTAG-GTTCTTCACCT-TAGTCACTTTTAGTTGACTTT
191275 ATTAG
64 ATTAG
* *
191280 TTTCACCCTGGTC-AACTTCATTTCGACTTAGGTTC
1 TTTCACCCTAGTCAAAC-CCATTTCGACTTAGGTTC
191315 CACCTTGGTT
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
66 29 0.31
67 1 0.01
68 10 0.11
69 53 0.57
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (68 bp):
TTTCACCCTAGTCAAACCCATTTCGACTTAGGTTCTTCACCTTAGTCACTTTTAGTTGACTTTAT
TAG
Found at i:193627 original size:20 final size:20
Alignment explanation
Indices: 193604--193655 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
193594 CACACCCAGA
*
193604 TGTATCAATACATTATGCTT
1 TGTATCGATACATTATGCTT
193624 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
193644 TGTATCGATACA
1 TGTATCGATACA
193656 ATGTATCGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:193662 original size:13 final size:13
Alignment explanation
Indices: 193644--193668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
193634 CATTATGCTT
193644 TGTATCGATACAA
1 TGTATCGATACAA
193657 TGTATCGATACA
1 TGTATCGATACA
193669 TGCTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:193666 original size:33 final size:32
Alignment explanation
Indices: 193624--193687 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
193614 CATTATGCTT
* *
193624 TGTATCGATACATTATGCTTTGTATCGATACAA
1 TGTATCGATACATGAT-CATTGTATCGATACAA
*
193657 TGTATCGATACATGCTCATTGTATCGATACA
1 TGTATCGATACATGATCATTGTATCGATACA
193688 TGCTTAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCGATACAA
Found at i:193681 original size:19 final size:20
Alignment explanation
Indices: 193657--193709 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
193647 ATCGATACAA
*
193657 TGTATCGATACATGC-TCAT
1 TGTATCGATACATGCTTAAT
193676 TGTATCGATACATGCTTAAT
1 TGTATCGATACATGCTTAAT
193696 TGTATCGATACATG
1 TGTATCGATACATG
193710 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATGCTTAAT
Found at i:195509 original size:6 final size:6
Alignment explanation
Indices: 195485--195535 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
195475 GATTGATTTA
* * * *
195485 TTTATT TTTAAT GTTAAT TTTAAT TTT-AT TTTAACT TGTATT TTTAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAA-T TTTAAT TTTAAT
195533 TTT
1 TTT
195536 GTTTTTCATC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
5 5 0.14
6 27 0.75
7 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (6 bp):
TTTAAT
Found at i:195512 original size:24 final size:25
Alignment explanation
Indices: 195485--195541 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
195475 GATTGATTTA
195485 TTTATTTTTAA--TGTTAATTTTAAT
1 TTTATTTTTAACTTG-TAATTTTAAT
*
195509 TTTA-TTTTAACTTGTATTTTTAAT
1 TTTATTTTTAACTTGTAATTTTAAT
*
195533 TTTGTTTTT
1 TTTATTTTT
195542 CATCTTTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 6 0.21
24 16 0.57
25 6 0.21
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (25 bp):
TTTATTTTTAACTTGTAATTTTAAT
Found at i:195773 original size:16 final size:17
Alignment explanation
Indices: 195752--195784 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
195742 TTTAGTTATT
195752 CCATGTC-ATATTTTTG
1 CCATGTCAATATTTTTG
195768 CCATGTCTAATATTTTT
1 CCATGTC-AATATTTTT
195785 AGCTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.52
Consensus pattern (17 bp):
CCATGTCAATATTTTTG
Found at i:196268 original size:22 final size:22
Alignment explanation
Indices: 196220--196288 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 22
196210 ACCCAACTCC
* *
196220 AACATAAACAAACAATCACAAAC-
1 AACAT-AAC-AACAACCAAAAACA
196243 AACATAACAACAACCAAAAACA
1 AACATAACAACAACCAAAAACA
*
196265 AACA-AAAATACAACCAAGAAACA
1 AACATAACA-ACAACCAA-AAACA
196288 A
1 A
196289 CCTAAGAGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 14 0.35
22 15 0.38
23 11 0.28
ACGTcount: A:0.68, C:0.25, G:0.01, T:0.06
Consensus pattern (22 bp):
AACATAACAACAACCAAAAACA
Found at i:198077 original size:53 final size:53
Alignment explanation
Indices: 197997--198102 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
197987 GGACCAATCT
197997 TAACACCCCGAGGCATTCGTAGTAGGTGGAGGATCAAAGATATGTGGGGACGA
1 TAACACCCCGAGGCATTCGTAGTAGGTGGAGGATCAAAGATATGTGGGGACGA
198050 TAACACCCCGAGGCATTCGTAGTAGGTGGAGGATCAAAGATATGTGGGGACGA
1 TAACACCCCGAGGCATTCGTAGTAGGTGGAGGATCAAAGATATGTGGGGACGA
198103 ACTTGGAACT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.17, G:0.34, T:0.19
Consensus pattern (53 bp):
TAACACCCCGAGGCATTCGTAGTAGGTGGAGGATCAAAGATATGTGGGGACGA
Found at i:198275 original size:50 final size:51
Alignment explanation
Indices: 198194--198339 Score: 231
Period size: 50 Copynumber: 2.9 Consensus size: 51
198184 AAAAGTCACA
* *
198194 TTTTTACCCAAATGTATCGATACATTTTTCAATTTATCGATACATTCTGTC
1 TTTTTACCCAAATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
* * *
198245 -TTTTACCTAGATGTATCGATACATTCTTCAATGTATCGATACATTCTATC
1 TTTTTACCCAAATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
*
198295 TTTTTACCCAAATGTATCGATGCATTTTTCAATGTATCGATACAT
1 TTTTTACCCAAATGTATCGATACATTTTTCAATGTATCGATACAT
198340 CTAGTTAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 45 0.53
51 40 0.47
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.43
Consensus pattern (51 bp):
TTTTTACCCAAATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
Found at i:199256 original size:20 final size:20
Alignment explanation
Indices: 199218--199256 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
199208 TGGCCTTTGA
*
199218 TCATGCATTTTCACTATGTT
1 TCATGCATTTTAACTATGTT
199238 TCATGCACTTTTAAC-ATGT
1 TCATGCA-TTTTAACTATGT
199257 CAAGCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (20 bp):
TCATGCATTTTAACTATGTT
Found at i:211706 original size:79 final size:79
Alignment explanation
Indices: 211624--212250 Score: 469
Period size: 79 Copynumber: 7.9 Consensus size: 79
211614 AATAATGGGA
* * * *
211624 TTGGATTATCCCCTTGGAAATAACAAGGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGG
1 TTGGAGTATCCCCTTGAAAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGG
*
211689 AAATAAAACCGAGA
66 AAATAAAACCGAGG
* ** * * * *
211703 TTGGAGTAT-CCTTTCGAAAATAATGAGGTTGGAGTATCCTCGATTATGAAAAATTGATATTTTA
1 TTGGAGTATCCCCTT-GAAAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTG
*
211767 GAAATAAAGCC-AGGG
65 GAAATAAAACCGA-GG
* * * * *
211782 TTGGAGTATCCCCTCGAAAATAACAGGGTTAGAGTATCCCTGATTATGAAAAATCGATGTTTTAG
1 TTGGAGTATCCCCTTGAAAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGG
211847 AAATAAAAACCGAGG
66 AAAT-AAAACCGAGG
* * * ** * *
211862 TTAGAGTAT-CCCTTCAAAAATAACAAGGTTAGAGTAAT-CCCGATGGTGAAAAATCAATATTTT
1 TTGGAGTATCCCCTT-GAAAATAACAAGGTTGGAGT-ATCCCCGATTATGAAAAATCGATGTTTT
* * *
211925 GAAAATAAAATCGGGG
64 GGAAATAAAACCGAGG
* * * * *
211941 TTGGAGTATCCCC-TCATAAATAACAGGGTTGGAGTATCCCCAATTATGGAAAATCAATGTTTTG
1 TTGGAGTATCCCCTTGA-AAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTG
*
212005 GAAATAAAACCGGGG
65 GAAATAAAACCGAGG
** ** ** * * * **
212020 TTGGAGTATTGCCTCAAAAATAACGGGGTTGGAGTATCTCCGGTTATGGAAAAATCAACATTTTG
1 TTGGAGTATCCCCTTGAAAATAACAAGGTTGGAGTATCCCCGATTAT-GAAAAATCGATGTTTTG
* **
212085 GATATAAAA-TTAGGG
65 GAAATAAAACCGA-GG
* * * * * * * *
212100 TTAGAGTAT-CCCTTCAAAAATAAC-GGGGTGGGGTATCCCCGGTTGTGAAAAATCGATGTTTTA
1 TTGGAGTATCCCCTT-GAAAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTG
* * *
212163 GAAGTAAAATCGGGG
65 GAAATAAAACCGAGG
* * ** ** ** * * * * *
212178 TTGAAGTATCTCCTCAAAAATAATGAGGTTGGAGTATCCCTAATGATGGAAAATCGGTATTTTAG
1 TTGGAGTATCCCCTTGAAAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGG
212243 AAATAAAA
66 AAATAAAA
212251 ACATGAATAA
Statistics
Matches: 435, Mismatches: 96, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
78 45 0.10
79 282 0.65
80 105 0.24
81 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.28
Consensus pattern (79 bp):
TTGGAGTATCCCCTTGAAAATAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGG
AAATAAAACCGAGG
Found at i:211933 original size:159 final size:156
Alignment explanation
Indices: 211624--212217 Score: 645
Period size: 159 Copynumber: 3.8 Consensus size: 156
211614 AATAATGGGA
* * * * * *
211624 TTGGATTATCCCCTTGGAAATAACAAGGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGG
1 TTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTTAG
* * * *
211689 AAATAAAACCGAGATTGGAGTATCCTTTCGAAAATAATGAGGTTGGAGTATCCTCGATTATGAAA
66 AAATAAAACCGAGGTTGGAGTATCC-CTCAAAAATAACGAGGTTGGAGTATCC-CGATTATGAAA
** **
211754 AATTGATATTTT-AGAAATAAAGCCAGGG
129 AATCAATATTTTGA-AAATAAAATCAGGG
* **
211782 TTGGAGTATCCCCTCGAAAATAACAGGGTTAGAGTATCCCTGATTATGAAAAATCGATGTTTTAG
1 TTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTTAG
* * * **
211847 AAATAAAAACCGAGGTTAGAGTATCCCTTCAAAAATAACAAGGTTAGAGTAATCCCGATGGTGAA
66 AAAT-AAAACCGAGGTTGGAGTATCCC-TCAAAAATAACGAGGTTGGAGT-ATCCCGATTATGAA
*
211912 AAATCAATATTTTGAAAATAAAATCGGGG
128 AAATCAATATTTTGAAAATAAAATCAGGG
* * *
211941 TTGGAGTATCCCCTC-ATAAATAACAGGGTTGGAGTATCCCCAATTATGGAAAATCAATGTTTTG
1 TTGGAGTATCCCCTCGA-AAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTTA
* * * *
212005 GAAATAAAACCGGGGTTGGAGTATTGCCTCAAAAATAACGGGGTTGGAGTATCTCCGGTTATGGA
65 GAAATAAAACCGAGGTTGGAGTA-TCCCTCAAAAATAACGAGGTTGGAGTATC-CCGATTAT-GA
* * * *
212070 AAAATCAACATTTTGGATATAAAATTAGGG
127 AAAATCAATATTTTGAAAATAAAATCAGGG
* * * * * ** *
212100 TTAGAGTATCCCTTCAAAAATAAC-GGGGTGGGGTATCCCCGGTTGTGAAAAATCGATGTTTTAG
1 TTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTTAG
* * * * *
212164 AAGTAAAATCGGGGTTGAAGTATCTCCTCAAAAATAATGAGGTTGGAGTATCCC
66 AAATAAAACCGAGGTTGGAGTATC-CCTCAAAAATAACGAGGTTGGAGTATCCC
212218 TAATGATGGA
Statistics
Matches: 367, Mismatches: 59, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
157 6 0.02
158 177 0.48
159 178 0.49
160 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (156 bp):
TTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTTAG
AAATAAAACCGAGGTTGGAGTATCCCTCAAAAATAACGAGGTTGGAGTATCCCGATTATGAAAAA
TCAATATTTTGAAAATAAAATCAGGG
Found at i:212012 original size:238 final size:237
Alignment explanation
Indices: 211641--212250 Score: 692
Period size: 238 Copynumber: 2.6 Consensus size: 237
211631 ATCCCCTTGG
* * * * *
211641 AAATAACAAGGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGGAAATAAAACCGAGATTG
1 AAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAATCGGGGTTG
** * * * **
211706 GAGTATCCTTTCGAAAATAATGAGGTTGGAGTATCCTCGATTATGAAAAATTGATATTTTAGAAA
66 GAGTATCCCCTC-AAAATAATGAGGTTGGAGTATCCCCAATTATGGAAAATCAATATTTTAGAAA
* *
211771 TAAAGCCAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTAGAGTATC-CCTGATTAT-GAAAA
130 TAAAACCAGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCTCC-GATTATGGAAAA
* ** *
211834 ATCGATGTTTTAGAAATAAAAACCGAGGTTAGAGTATCCCTTCAA
194 ATCAACATTTTAGAAATAAAAACAG-GGTTAGAGTATCCCTTCAA
* * * *
211879 AAATAACAAGGTTAGAGTAAT-CCCGATGGTGAAAAATCAATATTTTGAAAATAAAATCGGGGTT
1 AAATAACAAGGTTGGAGT-ATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAATCGGGGTT
* * *
211943 GGAGTATCCCCTCATAAATAA-CAGGGTTGGAGTATCCCCAATTATGGAAAATCAATGTTTTGGA
65 GGAGTATCCCCTCA-AAATAATGA-GGTTGGAGTATCCCCAATTATGGAAAATCAATATTTTAGA
* ** * * *
212007 AATAAAACCGGGGTTGGAGTATTGCCTCAAAAATAACGGGGTTGGAGTATCTCCGGTTATGGAAA
128 AATAAAACCAGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCTCCGATTATGGAAA
* * **
212072 AATCAACATTTTGGATATAAAATTAGGGTTAGAGTATCCCTTCAA
193 AATCAACATTTTAGAAATAAAAACAGGGTTAGAGTATCCCTTCAA
* * * * *
212117 AAATAAC-GGGGTGGGGTATCCCCGGTTGTGAAAAATCGATGTTTT-AGAAGTAAAATCGGGGTT
1 AAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGA-AAATAAAATCGGGGTT
* * * * **
212180 GAAGTATCTCCTCAAAAATAATGAGGTTGGAGTATCCCTAATGATGGAAAATCGGTATTTTAGAA
65 GGAGTATCCCCTC-AAAATAATGAGGTTGGAGTATCCCCAATTATGGAAAATCAATATTTTAGAA
212245 ATAAAA
129 ATAAAA
212251 ACATGAATAA
Statistics
Matches: 310, Mismatches: 53, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
236 3 0.01
237 102 0.33
238 179 0.58
239 26 0.08
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (237 bp):
AAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAATCGGGGTTG
GAGTATCCCCTCAAAATAATGAGGTTGGAGTATCCCCAATTATGGAAAATCAATATTTTAGAAAT
AAAACCAGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCTCCGATTATGGAAAAAT
CAACATTTTAGAAATAAAAACAGGGTTAGAGTATCCCTTCAA
Found at i:212261 original size:12 final size:12
Alignment explanation
Indices: 212244--212270 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
212234 GTATTTTAGA
212244 AATAAAAACATG
1 AATAAAAACATG
212256 AATAAAAACATG
1 AATAAAAACATG
212268 AAT
1 AAT
212271 GAGATACCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (12 bp):
AATAAAAACATG
Found at i:214953 original size:39 final size:39
Alignment explanation
Indices: 214858--214997 Score: 104
Period size: 39 Copynumber: 3.6 Consensus size: 39
214848 ACTAAGTCTA
* * * ** * *
214858 TTAAGTTTAGTTTTGTACCTTTTGTTGAGATCAAGCCTTT
1 TTAAATTTAGTTTTGTACCTTCTATCAAAATCGAGCC-TT
* * * * *
214898 TTAAGTTCAATTTTGTATCTTTCT-TCAAAATCGAG-TTT
1 TTAAATTTAGTTTTGTA-CCTTCTATCAAAATCGAGCCTT
*
214936 GTTAAATTTAGTTTTGTACCTTCTATTAAAATCGAGCCTT
1 -TTAAATTTAGTTTTGTACCTTCTATCAAAATCGAGCCTT
* *
214976 TTAAGTTTAGTTTTATACCTTC
1 TTAAATTTAGTTTTGTACCTTC
214998 AATTGAAACT
Statistics
Matches: 79, Mismatches: 17, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
38 7 0.09
39 44 0.56
40 24 0.30
41 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.13, T:0.49
Consensus pattern (39 bp):
TTAAATTTAGTTTTGTACCTTCTATCAAAATCGAGCCTT
Found at i:215023 original size:39 final size:39
Alignment explanation
Indices: 214924--215026 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 39
214914 ATCTTTCTTC
** * * *
214924 AAAATCGAGTTTGTTAAATTTAGTTTTGTACCTTCTATT
1 AAAATCGAGCCTGTTAAGTTTAGTTTTATACCTTCAATT
*
214963 AAAATCGAGCCTTTTAAGTTTAGTTTTATACCTTCAATT
1 AAAATCGAGCCTGTTAAGTTTAGTTTTATACCTTCAATT
* * *
215002 GAAA-CTGATCCTGTTAGGTTTAGTT
1 AAAATC-GAGCCTGTTAAGTTTAGTT
215027 CCGTATCTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 1 0.02
39 52 0.98
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.45
Consensus pattern (39 bp):
AAAATCGAGCCTGTTAAGTTTAGTTTTATACCTTCAATT
Found at i:215204 original size:79 final size:79
Alignment explanation
Indices: 215121--215313 Score: 210
Period size: 79 Copynumber: 2.4 Consensus size: 79
215111 TTTTCAATTG
* **
215121 AGACCGAGCCTTTTTAAGTTTAGTTTTGCT-CCTTCCACCAAAAACAAACT-TGTTAGGTTTAGT
1 AGACCGAGCCTTTTTAAGTTTAGTTTT-ATACCTTCCACC-AAAACAAACTCCATTAGGTTTAGT
*
215184 TTCTTACCTTCTGTAA
64 TTCATACCTTCTGTAA
* * * * ** *
215200 AGACCGAGCCTTTTAAAATTTAGTTTTATACCTTCCATCTAAACCGAGTCCATTAGGTTTAGTTT
1 AGACCGAGCCTTTTTAAGTTTAGTTTTATACCTTCCACCAAAACAAACTCCATTAGGTTTAGTTT
* *
215265 CATACCTTTTGTCA
66 CATACCTTCTGTAA
* * *
215279 AGACCAAGCATTTTTAAGTTTAGTTTCATACCTTC
1 AGACCGAGCCTTTTTAAGTTTAGTTTTATACCTTC
215314 TGTCAAAGCC
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
78 7 0.07
79 87 0.93
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.39
Consensus pattern (79 bp):
AGACCGAGCCTTTTTAAGTTTAGTTTTATACCTTCCACCAAAACAAACTCCATTAGGTTTAGTTT
CATACCTTCTGTAA
Found at i:215326 original size:40 final size:41
Alignment explanation
Indices: 215177--215332 Score: 128
Period size: 40 Copynumber: 3.9 Consensus size: 41
215167 AACTTGTTAG
* * * * *
215177 GTTTAGTTTCTTACCTTCTGTAAAGACCGAG-CCTTTTAAA
1 GTTTAGTTTCATACCTTCTGTCAAGACCAAGTCATTTTTAA
* * ** * *
215217 ATTTAGTTTTATACCTTCCATCTAA-ACCGAGTCCA---TTAG
1 GTTTAGTTTCATACCTTCTGTC-AAGACCAAGT-CATTTTTAA
*
215256 GTTTAGTTTCATACCTTTTGTCAAGACCAAG-CATTTTTAA
1 GTTTAGTTTCATACCTTCTGTCAAGACCAAGTCATTTTTAA
215296 GTTTAGTTTCATACCTTCTGTCAA-AGCCAAGTCATTT
1 GTTTAGTTTCATACCTTCTGTCAAGA-CCAAGTCATTT
215333 GGGTTAGTTT
Statistics
Matches: 90, Mismatches: 17, Indels: 17
0.73 0.14 0.14
Matches are distributed among these distances:
37 2 0.02
38 2 0.02
39 25 0.28
40 53 0.59
41 7 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (41 bp):
GTTTAGTTTCATACCTTCTGTCAAGACCAAGTCATTTTTAA
Found at i:216184 original size:32 final size:33
Alignment explanation
Indices: 216143--216205 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
216133 CCAGTTTCAT
*
216143 GTATCGATACAATGAACAA-GTATCGATACAAC
1 GTATCGATACAAAGAACAATGTATCGATACAAC
* *
216175 GTATCGATACAAAGCATAATGTATCGATACA
1 GTATCGATACAAAGAACAATGTATCGATACA
216206 TCTGGATGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (33 bp):
GTATCGATACAAAGAACAATGTATCGATACAAC
Found at i:216863 original size:21 final size:21
Alignment explanation
Indices: 216820--216863 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
216810 AAAACTCCCC
* * *
216820 CTTAATAAAATTTTTCACCCT
1 CTTAATAAAATATTTAAACCT
*
216841 CTTAATAAAATATTTAAAGCT
1 CTTAATAAAATATTTAAACCT
216862 CT
1 CT
216864 CTTTTGTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (21 bp):
CTTAATAAAATATTTAAACCT
Found at i:220493 original size:13 final size:13
Alignment explanation
Indices: 220475--220499 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
220465 CATAAAGTGT
220475 TGTATCGATACAA
1 TGTATCGATACAA
220488 TGTATCGATACA
1 TGTATCGATACA
220500 TTTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:220623 original size:52 final size:52
Alignment explanation
Indices: 220539--220689 Score: 257
Period size: 52 Copynumber: 2.9 Consensus size: 52
220529 CTGCCAAAAA
*
220539 ATGTATCGATACATCACTTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACATTA-TTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
*
220592 ATGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACATTATTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
* *
220644 ATGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTT
1 ATGTATCGATACATTATTAAATGTATCGATACATGCAGGCAAATTT
220690 TCATATTTCG
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
52 78 0.84
53 15 0.16
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (52 bp):
ATGTATCGATACATTATTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:234414 original size:24 final size:23
Alignment explanation
Indices: 234385--234455 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
234375 CGTCCTCCAC
* *
234385 AAAAAAAAAAAACAGAAGAAAAA
1 AAAAAAAAAAAACAAAACAAAAA
234408 AAGAAAAAAAAAACAAAACAAAAA
1 AA-AAAAAAAAAACAAAACAAAAA
* *
234432 AAAAAACAACAACAACAACAAAAA
1 AAAAAAAAAAAACAA-AACAAAAA
234456 GGGTCCGGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 13 0.31
24 29 0.69
ACGTcount: A:0.85, C:0.11, G:0.04, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAACAAAACAAAAA
Found at i:234445 original size:18 final size:17
Alignment explanation
Indices: 234411--234446 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
234401 AGAAAAAAAG
234411 AAAAAAAAAACAAAACA
1 AAAAAAAAAACAAAACA
234428 AAAAAAAAAACAACAACA
1 AAAAAAAAAACAA-AACA
234446 A
1 A
234447 CAACAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAACAAAACA
Found at i:234455 original size:1 final size:1
Alignment explanation
Indices: 234385--234437 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
234375 CGTCCTCCAC
* * * * * *
234385 AAAAAAAAAAAACAGAAGAAAAAAAGAAAAAAAAAACAAAACAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
234438 CAACAACAAC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.89, C:0.06, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:235929 original size:29 final size:29
Alignment explanation
Indices: 235890--236045 Score: 199
Period size: 29 Copynumber: 5.3 Consensus size: 29
235880 TCACCCTTCA
235890 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
235919 AAAGTCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
235948 AAAGTCCACAAGTCAGTGGCAAC--CTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
235975 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * * *
236004 AAAGCCCACACAAGTCGGTGGCAACCTTCTC
1 AAAG-CC-CACAAGTCAGTGGCATCTTTTTC
236035 TAAAGCCCACA
1 -AAAGCCCACA
236046 CAAGTCGGTG
Statistics
Matches: 112, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
27 24 0.21
29 57 0.51
30 6 0.05
31 21 0.19
32 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTC
Found at i:235987 original size:85 final size:91
Alignment explanation
Indices: 235882--236073 Score: 261
Period size: 85 Copynumber: 2.2 Consensus size: 91
235872 GACATTCCTC
* * *
235882 ACCCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAG-TC-CACAAGTCAGTGGCATCTTT
1 ACCCTTC-AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACACAAGTCAGTGGCAACCTT
* *
235945 TTC-AAAG-TC-CACAAGTCAGTGGCA
65 CTCTAAAGCCCACACAAGTCAGTGGCA
*
235969 A-CCTTCAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACACAAGTCGGTGGCAACCTTC
1 ACCCTTCAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACACAAGTCAGTGGCAACCTTC
*
236033 TCTAAAGCCCACACAAGTCGGTGGCA
66 TCTAAAGCCCACACAAGTCAGTGGCA
*
236059 ACCCTTCTAAGCCCA
1 ACCCTTCAAAGCCCA
236074 ATATAGCTGG
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
85 33 0.36
86 6 0.07
87 20 0.22
88 4 0.04
89 1 0.01
90 15 0.16
91 12 0.13
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22
Consensus pattern (91 bp):
ACCCTTCAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACACAAGTCAGTGGCAACCTTC
TCTAAAGCCCACACAAGTCAGTGGCA
Found at i:236045 original size:32 final size:30
Alignment explanation
Indices: 235896--236073 Score: 154
Period size: 29 Copynumber: 6.0 Consensus size: 30
235886 TTCAAAAGCC
* * *
235896 CACAAGTCAGTGGCATCTTTTTCAAAG-TC-
1 CACAAGTCAGTGGCAAC-CTTTCAAAGCCCA
* * *
235925 CACAAGTCAGTGGCATCTTTTTCAAAG-TC-
1 CACAAGTCAGTGGCAAC-CTTTCAAAGCCCA
235954 CACAAGTCAGTGGCAACC-TTCAAAG-CC-
1 CACAAGTCAGTGGCAACCTTTCAAAGCCCA
* *
235981 CACAAGTCAGTGGCATCTTTTTCAAAGCCCA
1 CACAAGTCAGTGGCAAC-CTTTCAAAGCCCA
*
236012 CACAAGTCGGTGGCAACCTTCTCTAAAGCCCA
1 CACAAGTCAGTGGCAACCTT-TC-AAAGCCCA
* * *
236044 CACAAGTCGGTGGCAACCCTTCTAAGCCCA
1 CACAAGTCAGTGGCAACCTTTCAAAGCCCA
236074 ATATAGCTGG
Statistics
Matches: 133, Mismatches: 10, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
27 24 0.18
29 52 0.39
30 11 0.08
31 19 0.14
32 27 0.20
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (30 bp):
CACAAGTCAGTGGCAACCTTTCAAAGCCCA
Found at i:236130 original size:49 final size:47
Alignment explanation
Indices: 236066--236292 Score: 285
Period size: 43 Copynumber: 4.9 Consensus size: 47
236056 GCAACCCTTC
*
236066 TAAGCCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCTTCGT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTC-TC-T
*
236115 TAAGTCCAATGTAGCTGGCCTTGAATCAGCA-CATTGGCA-C--CT-T
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATC-TTGGCACCTTCTCT
* *
236158 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTC-TC-T
236207 TAAGTCCAATATAGCTGGCCTTGAATCAGCA-CATTGGCA-C--CT-T
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATC-TTGGCACCTTCTCT
*
236250 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTT
236293 TTCCATCTTT
Statistics
Matches: 157, Mismatches: 8, Indels: 29
0.81 0.04 0.15
Matches are distributed among these distances:
43 74 0.47
44 2 0.01
45 2 0.01
46 3 0.02
47 1 0.01
48 3 0.02
49 72 0.46
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (47 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCTCT
Found at i:236228 original size:92 final size:92
Alignment explanation
Indices: 236061--236337 Score: 437
Period size: 92 Copynumber: 3.0 Consensus size: 92
236051 CGGTGGCAAC
* * * *
236061 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCTTCGTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
236126 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* *
236154 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
236219 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
236246 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
* *
236311 TGTAGTTGGCTTTGAATCAGCACATTG
63 TGTAGCTGGCCTTGAATCAGCACATTG
236338 ACATCCCGTT
Statistics
Matches: 170, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
92 126 0.74
93 4 0.02
94 2 0.01
95 38 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:236271 original size:22 final size:22
Alignment explanation
Indices: 236204--236271 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
236194 GCACCTTCAT
236204 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
* * *
236226 CTTGAA-TCAGCACAT-TGGC--AC
1 CTTTAAGTC--CA-ATATAGCTGGC
236247 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
236269 CTT
1 CTT
236272 GAATCAGCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (22 bp):
CTTTAAGTCCAATATAGCTGGC
Found at i:236329 original size:52 final size:53
Alignment explanation
Indices: 236247--236400 Score: 175
Period size: 52 Copynumber: 2.9 Consensus size: 53
236237 ACATTGGCAC
*
236247 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * * * *
236299 CTTTAAGTTCAATGTAGTTGGCTTTGAATCAGCACATTGACATCCCGTTTCTCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCA--CCTTTTCTCAT
* * * * *
236354 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTT
236401 GTCACTTTTC
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
52 36 0.44
53 3 0.04
54 6 0.07
55 36 0.44
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:236489 original size:49 final size:48
Alignment explanation
Indices: 236421--236603 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 48
236411 TCATCTTCAC
*
236421 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC-T
* * *
236470 CTTTAAGACCAATGTAGCTGGCTTTGAATCAGCACATTGGCA----C-
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCT
* *
236513 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-C-T
* *
236565 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
236604 ACATCCTGTT
Statistics
Matches: 112, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 37 0.33
45 1 0.01
49 38 0.34
50 1 0.01
52 35 0.31
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (48 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCT
Found at i:236531 original size:43 final size:43
Alignment explanation
Indices: 236470--236559 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 43
236460 GCACCTTCTT
* *
236470 CTTTAAGACCAATGTAGCTGGCTTTGAATCAGCACATTGGCAC
1 CTTTAAGACCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
236513 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCAC
1 CTTTAAGACCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
236556 CTTT
1 CTTT
236560 TCCATCTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (43 bp):
CTTTAAGACCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:236591 original size:52 final size:55
Alignment explanation
Indices: 236513--236650 Score: 174
Period size: 52 Copynumber: 2.6 Consensus size: 55
236503 ACATTGGCAC
* * *
236513 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCA-CCT-TTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTGTTTCTCAT
* *
236565 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTGTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTGTTTCTCAT
* * * *
236620 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
236651 ACATATTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
52 37 0.51
53 3 0.04
54 4 0.06
55 28 0.39
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTGTTTCTCAT
Found at i:236626 original size:266 final size:266
Alignment explanation
Indices: 236152--236778 Score: 1074
Period size: 266 Copynumber: 2.3 Consensus size: 266
236142 AGCACATTGG
* * *
236152 CACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGACCAAT
*
236217 ATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* *
236282 ATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGTTGGCTTTGAATCAGCACATTGACATCCCGT
131 ATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCCGT
236347 TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTGTCACTTTTCT
196 TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTGTCACTTTTCT
236412 CATCTT
261 CATCTT
236418 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGACCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGACCAAT
* *
236483 GTAGCTGGCTTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATTAGCAT
66 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
*
236548 ATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTGT
131 ATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCCGT
236613 TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTGTCACTTTTCT
196 TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTGTCACTTTTCT
236678 CATCTT
261 CATCTT
* * *
236684 CATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTTAAAACC
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-T--TCTTTAAGA-C
* * * *
236749 CAATGTCGATGGCCATGAATCAGCATATTG
62 CAATGTAGCTGGCCTTGAATCAGCACATTG
236779 TCATTTTTTG
Statistics
Matches: 340, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
266 305 0.90
267 1 0.00
269 8 0.02
270 26 0.08
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (266 bp):
CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGACCAAT
GTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
ATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCCGT
TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTGTCACTTTTCT
CATCTT
Found at i:237619 original size:52 final size:52
Alignment explanation
Indices: 237535--237685 Score: 230
Period size: 52 Copynumber: 2.9 Consensus size: 52
237525 CTGCCAAAAA
* *
237535 ATGTATCGATACATCACTTAAATGTATCGATACATGCAAGCAAATTTGCCCAG
1 ATGTATCGATACATTA-TTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
*
237588 ATGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACATTATTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
* * * *
237640 ATGTATAGATACACTATTCAATATATCGATACATGCAGGCAAATTT
1 ATGTATCGATACATTATTAAATGTATCGATACATGCAGGCAAATTT
237686 TCATATTTCG
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
52 75 0.83
53 15 0.17
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (52 bp):
ATGTATCGATACATTATTAAATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:242165 original size:13 final size:13
Alignment explanation
Indices: 242147--242172 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
242137 TACAGCAAGT
242147 ATGTATCGATACA
1 ATGTATCGATACA
242160 ATGTATCGATACA
1 ATGTATCGATACA
242173 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:244428 original size:21 final size:21
Alignment explanation
Indices: 244390--244434 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
244380 TTGCAAGTTG
*
244390 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
244412 AAATAATGAA-TTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
244432 AAA
1 AAA
244435 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:246258 original size:15 final size:15
Alignment explanation
Indices: 246238--246268 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
246228 TAAAAATGTC
*
246238 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
246253 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
246268 C
1 C
246269 CAAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:248333 original size:20 final size:20
Alignment explanation
Indices: 248264--248343 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
248254 AATGTCCAAA
* *
248264 ATGTATCAATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
248284 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
248309 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
248329 TTGTATCGATACATT
1 ATGTATCGATACATT
248344 GTATCGATAC
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
20 30 0.62
24 1 0.02
25 17 0.35
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:248347 original size:13 final size:13
Alignment explanation
Indices: 248329--248367 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
248319 ACATTTTTCT
248329 TTGTATCGATACA
1 TTGTATCGATACA
248342 TTGTATCGATACA
1 TTGTATCGATACA
*
248355 CTGTATCGATACA
1 TTGTATCGATACA
248368 AGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:248512 original size:21 final size:21
Alignment explanation
Indices: 248488--248534 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
248478 AAATCTTTTG
248488 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
248509 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
248529 CAAAAT
1 CAAAAT
248535 CAGCATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:248531 original size:20 final size:19
Alignment explanation
Indices: 248490--248532 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
248480 ATCTTTTGCA
248490 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
248510 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
248530 AAA
1 AAA
248533 ATCAGCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:250904 original size:13 final size:13
Alignment explanation
Indices: 250886--250911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
250876 TACAGCAAGT
250886 ATGTATCGATACA
1 ATGTATCGATACA
250899 ATGTATCGATACA
1 ATGTATCGATACA
250912 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:251717 original size:20 final size:20
Alignment explanation
Indices: 251694--251745 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
251684 ACAATGTGTT
*
251694 GATACTTTTTACCATGTATC
1 GATACATTTTACCATGTATC
*
251714 GATACAATGTT-CCATGTATC
1 GATAC-ATTTTACCATGTATC
251734 GATACATTTTAC
1 GATACATTTTAC
251746 TTAGGGTAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 4 0.15
20 20 0.74
21 3 0.11
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (20 bp):
GATACATTTTACCATGTATC
Found at i:260303 original size:211 final size:211
Alignment explanation
Indices: 259945--260339 Score: 630
Period size: 211 Copynumber: 1.9 Consensus size: 211
259935 GTTCATTTCA
*
259945 AAATTTGAATATTTTGTAAGAATTGTTTCAAAAGCAACTTGAAAATAAAGAAAGTAGGGAAAAGA
1 AAATTTGAATATTTTGTAAGAATTGTTTCAAAAACAACTTGAAAATAAAGAAAGTAGGGAAAAGA
* *
260010 GAAAGCTCGACACAAATATTTATAGAGGTTTAGTCTAAACATAGCACCTACGTCCTCTCTCTTTG
66 GAAAACTCGACACAAATATTTATAGAGGTTTAGTCCAAACATAGCACCTACGTCCTCTCTCTTTG
*
260075 ACACTTCCTTGTCGAGTGTTACCAAAATCCACTACACGAATTGTTTACCTTTCAGGCAAAGGTAT
131 ACACTTCCTTATCGAGTGTTACCAAAATCCACTACACGAATTGTTTACCTTTCAGGCAAAGGTAT
260140 AATTTGGTTCTTTTTG
196 AATTTGGTTCTTTTTG
* * * * *
260156 AAATTTGAATATTTTGTAAGAATTGTTTCAAAAATAACTTGAAGATAAAGAGATTTGGGAAAAGA
1 AAATTTGAATATTTTGTAAGAATTGTTTCAAAAACAACTTGAAAATAAAGAAAGTAGGGAAAAGA
* * * * *
260221 GAAAACTCGATACAAGTGTTTATAGAGGTTTGGTCCAAACAT-GACACTTACGTCCTCTCTCTTT
66 GAAAACTCGACACAAATATTTATAGAGGTTTAGTCCAAACATAG-CACCTACGTCCTCTCTCTTT
* *
260285 GACACTTTCTTATCGAGTGTTACCACAATCCACTACACGAATTGTTTACCTTTCA
130 GACACTTCCTTATCGAGTGTTACCAAAATCCACTACACGAATTGTTTACCTTTCA
260340 AGAAAGGCAT
Statistics
Matches: 167, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
210 1 0.01
211 166 0.99
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (211 bp):
AAATTTGAATATTTTGTAAGAATTGTTTCAAAAACAACTTGAAAATAAAGAAAGTAGGGAAAAGA
GAAAACTCGACACAAATATTTATAGAGGTTTAGTCCAAACATAGCACCTACGTCCTCTCTCTTTG
ACACTTCCTTATCGAGTGTTACCAAAATCCACTACACGAATTGTTTACCTTTCAGGCAAAGGTAT
AATTTGGTTCTTTTTG
Found at i:260966 original size:19 final size:20
Alignment explanation
Indices: 260925--260976 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
260915 CAATTTTATA
* *
260925 TATCGATACAATTAAGTATG
1 TATCGATACAATGAAGCATG
260945 TATCGATACAATGAA-CATG
1 TATCGATACAATGAAGCATG
*
260964 TATCGATATAATG
1 TATCGATACAATG
260977 TATCGATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (20 bp):
TATCGATACAATGAAGCATG
Found at i:260983 original size:32 final size:33
Alignment explanation
Indices: 260942--261004 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
260932 ACAATTAAGT
*
260942 ATGTATCGATACAATG-A-ACATGTATCGATATA
1 ATGTATCGATACAAAGCATA-ATGTATCGATATA
260974 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
261005 CATCTAGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATATA
Found at i:267776 original size:29 final size:29
Alignment explanation
Indices: 267736--267800 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
267726 CAAAATGCAT
*
267736 GAACATGGGCTGCTAAGATGATGGAAATG
1 GAACATGCGCTGCTAAGATGATGGAAATG
*
267765 GAACATGCGCTGTTAAGATGATGGAAATG
1 GAACATGCGCTGCTAAGATGATGGAAATG
*
267794 AAACATG
1 GAACATG
267801 GCATTTTGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.22
Consensus pattern (29 bp):
GAACATGCGCTGCTAAGATGATGGAAATG
Found at i:272170 original size:51 final size:51
Alignment explanation
Indices: 272094--272208 Score: 221
Period size: 51 Copynumber: 2.3 Consensus size: 51
272084 CATAGGTATT
*
272094 TGTATCGATAGATTAATGTTGACTTAGGCTACAACGGTCAAAACCCTAGAA
1 TGTATCGATACATTAATGTTGACTTAGGCTACAACGGTCAAAACCCTAGAA
272145 TGTATCGATACATTAATGTTGACTTAGGCTACAACGGTCAAAACCCTAGAA
1 TGTATCGATACATTAATGTTGACTTAGGCTACAACGGTCAAAACCCTAGAA
272196 TGTATCGATACAT
1 TGTATCGATACAT
272209 ATCTAGATGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (51 bp):
TGTATCGATACATTAATGTTGACTTAGGCTACAACGGTCAAAACCCTAGAA
Found at i:272220 original size:20 final size:21
Alignment explanation
Indices: 272190--272228 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
272180 GGTCAAAACC
272190 CTAGAATGTATCGATACATAT
1 CTAGAATGTATCGATACATAT
272211 CTAG-ATGTATCGATACAT
1 CTAGAATGTATCGATACAT
272229 TGTATCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (21 bp):
CTAGAATGTATCGATACATAT
Found at i:278659 original size:110 final size:111
Alignment explanation
Indices: 278465--278668 Score: 374
Period size: 110 Copynumber: 1.8 Consensus size: 111
278455 ACTCCTAGAC
*
278465 AAATTTTGCTGGTTTAGGTTCTACAAAAAAAACATCCCCATTTCAACATCTAAGCCTCCAAAGTA
1 AAATTTTGCTGGTTTAGGTTCTACAAAAAAAACATCCCCATTTCAAAATCTAAGCCTCCAAAGTA
*
278530 GTGTCCACAACCTGTTCGGTAAAAAGCCTCCAAAATCTAAGCCTCT
66 GTGTCCACAACCTGCTCGGTAAAAAGCCTCCAAAATCTAAGCCTCT
*
278576 AAATTTTGTTGGTTTAGGTTCTAC-AAAAAAACATCCCCATTTCAAAATCTAAGCCTCCAAAGTA
1 AAATTTTGCTGGTTTAGGTTCTACAAAAAAAACATCCCCATTTCAAAATCTAAGCCTCCAAAGTA
278640 GTGTCCACAACCTGCTCGGTAAAAAGCCT
66 GTGTCCACAACCTGCTCGGTAAAAAGCCT
278669 GAACCAAGCA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
110 67 0.74
111 23 0.26
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.27
Consensus pattern (111 bp):
AAATTTTGCTGGTTTAGGTTCTACAAAAAAAACATCCCCATTTCAAAATCTAAGCCTCCAAAGTA
GTGTCCACAACCTGCTCGGTAAAAAGCCTCCAAAATCTAAGCCTCT
Found at i:280170 original size:22 final size:22
Alignment explanation
Indices: 280130--280171 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
280120 ATTTTGGCAT
* *
280130 TTGACAAAGGGGGAGAAATTTG
1 TTGACAAAGGCGGACAAATTTG
*
280152 TTGACAATGGCGGACAAATT
1 TTGACAAAGGCGGACAAATT
280172 ATTGAAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.24
Consensus pattern (22 bp):
TTGACAAAGGCGGACAAATTTG
Found at i:280980 original size:20 final size:19
Alignment explanation
Indices: 280936--280988 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
280926 GTATCGATAT
***
280936 ATTGTATCAATACATGTTC
1 ATTGTATCAATACACACTC
280955 ATTGTATCAATACACACTC
1 ATTGTATCAATACACACTC
*
280974 AATTGTATCGATACA
1 -ATTGTATCAATACA
280989 TGAAACTGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (19 bp):
ATTGTATCAATACACACTC
Found at i:281091 original size:13 final size:13
Alignment explanation
Indices: 281073--281097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
281063 CATGGGACAT
281073 TGTATCGATACAA
1 TGTATCGATACAA
281086 TGTATCGATACA
1 TGTATCGATACA
281098 TAGTAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:281110 original size:33 final size:33
Alignment explanation
Indices: 281020--281117 Score: 133
Period size: 33 Copynumber: 3.0 Consensus size: 33
281010 TATCACTGTT
* * *
281020 TGTATCGATACATGGGATACTGTATCGAAACAA
1 TGTATCGATACATGGGAAAATGTATCGATACAA
* *
281053 TGTATCGATACATGGGACATTGTATCGATACAA
1 TGTATCGATACATGGGAAAATGTATCGATACAA
* *
281086 TGTATCGATACATAGTAAAATGTATCGATACA
1 TGTATCGATACATGGGAAAATGTATCGATACA
281118 TCGATACATT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (33 bp):
TGTATCGATACATGGGAAAATGTATCGATACAA
Found at i:291333 original size:13 final size:13
Alignment explanation
Indices: 291315--291341 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
291305 ACATTATGCT
291315 TTGTATCGATACA
1 TTGTATCGATACA
291328 TTGTATCGATACA
1 TTGTATCGATACA
291341 T
1 T
291342 GCTTATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:291444 original size:13 final size:13
Alignment explanation
Indices: 291426--291455 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
291416 GATACATGGG
291426 ACATTGTATCGAT
1 ACATTGTATCGAT
291439 ACATTGTATCGAT
1 ACATTGTATCGAT
291452 ACAT
1 ACAT
291456 GATGAAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:291454 original size:33 final size:33
Alignment explanation
Indices: 291412--291476 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
291402 AAGTGAAATA
*
291412 TATCGATACATG-GGACATTGTATCGATACATTG
1 TATCGATACATGAGGA-AATGTATCGATACATTG
*
291445 TATCGATACATGATGAAATGTATCGATACATT
1 TATCGATACATGAGGAAATGTATCGATACATT
291477 ATGCCCAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (33 bp):
TATCGATACATGAGGAAATGTATCGATACATTG
Found at i:294800 original size:33 final size:32
Alignment explanation
Indices: 294763--294830 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
294753 CGTTACAAGC
*
294763 CAATGTATCGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATATTATG-TGTATCGATA
*
294796 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTATGTGTATCGATA
294828 CAA
1 CAA
294831 ATTTGGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
CAATGTATCGATACATATTATGTGTATCGATA
Found at i:294803 original size:13 final size:13
Alignment explanation
Indices: 294785--294810 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
294775 ACATTTTATG
294785 ATGTATCGATACA
1 ATGTATCGATACA
294798 ATGTATCGATACA
1 ATGTATCGATACA
294811 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:294910 original size:20 final size:21
Alignment explanation
Indices: 294863--294915 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
294853 GCCAATGACC
**
294863 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
294884 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
294904 TGTATCGATACA
1 TGTATCGATACA
294916 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:294921 original size:13 final size:13
Alignment explanation
Indices: 294903--294927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
294893 ACATTTGGTC
294903 ATGTATCGATACA
1 ATGTATCGATACA
294916 ATGTATCGATAC
1 ATGTATCGATAC
294928 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:295521 original size:21 final size:23
Alignment explanation
Indices: 295485--295527 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
295475 TTCTTTTCTC
295485 TCCCCCTTAATCAAAA-AATTTT
1 TCCCCCTTAATCAAAATAATTTT
*
295507 TCCCCCTTAGT-AAAATAATTT
1 TCCCCCTTAATCAAAATAATTT
295528 AACAATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (23 bp):
TCCCCCTTAATCAAAATAATTTT
Found at i:296935 original size:21 final size:21
Alignment explanation
Indices: 296904--296955 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
296894 GCTGCTAGTG
*
296904 TGGGGGCTGCCCGGTTGCGACC
1 TGGGGG-TGCCCGGTCGCGACC
296926 TGGGGGTG-CCGGTCGCGACC
1 TGGGGGTGCCCGGTCGCGACC
296946 TGGTGGGTGC
1 TGG-GGGTGC
296956 TGCCTAGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 14 0.52
21 7 0.26
22 6 0.22
ACGTcount: A:0.04, C:0.27, G:0.50, T:0.19
Consensus pattern (21 bp):
TGGGGGTGCCCGGTCGCGACC
Found at i:297423 original size:13 final size:13
Alignment explanation
Indices: 297389--297438 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
297379 ATAAACCCTT
*
297389 TGTATCGATACAC
1 TGTATCGATACAA
* *
297402 TATAGCGATACAA
1 TGTATCGATACAA
297415 TGTATCGATACAA
1 TGTATCGATACAA
297428 TGTATCGATAC
1 TGTATCGATAC
297439 TTCTGAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:297635 original size:8 final size:8
Alignment explanation
Indices: 297622--297647 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
297612 AACATCATTC
297622 ATCACAAA
1 ATCACAAA
297630 ATCACAAA
1 ATCACAAA
297638 ATCACAAA
1 ATCACAAA
297646 AT
1 AT
297648 TCAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:303607 original size:19 final size:20
Alignment explanation
Indices: 303562--303613 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
303552 TTACAAGCCA
*
303562 ATGTATCGATACATTTTATG
1 ATGTATCGATACATATTATG
*
303582 ATGTATCGATACATATTGTG
1 ATGTATCGATACATATTATG
303602 -TGTATCGATACA
1 ATGTATCGATACA
303614 AATTTAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATATTATG
Found at i:303683 original size:20 final size:21
Alignment explanation
Indices: 303636--303688 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
303626 GCCAATGACC
**
303636 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
303657 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
303677 TGTATCGATACA
1 TGTATCGATACA
303689 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:303694 original size:13 final size:13
Alignment explanation
Indices: 303676--303700 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
303666 ACATTTGGTC
303676 ATGTATCGATACA
1 ATGTATCGATACA
303689 ATGTATCGATAC
1 ATGTATCGATAC
303701 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:304187 original size:58 final size:58
Alignment explanation
Indices: 304135--304353 Score: 219
Period size: 59 Copynumber: 3.7 Consensus size: 58
304125 AAAATGTATG
* * * * *
304135 AAATTGCACCAAAGTTCCTAGATCATGAAAAATTACCTAAATGACATCAAAATTAAAAAAA
1 AAATTACACTAAAGTCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATT---AATA
* * * * * * *
304196 AAATTGCACTAAAATCCCTAGAT-ATGGAAACTTACCTAAATGACATCAAAATTCATG
1 AAATTACACTAAAGTCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTAATA
* * *
304253 AAATTACACTAAAATCCTTAAATCATGAAAAATGACCTAAATGACATCAAAA-TACATA
1 AAATTACACTAAAGTCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTA-ATA
*
304311 AAATTTACA-TAAAAGTCCCTAGATCATGAAAAATGACTTAAAT
1 AAA-TTACACT-AAAGTCCCTAGATCATGAAAAATGACCTAAAT
304354 TATCCTAAAA
Statistics
Matches: 134, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
57 22 0.16
58 31 0.23
59 33 0.25
60 28 0.21
61 20 0.15
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (58 bp):
AAATTACACTAAAGTCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTAATA
Found at i:304242 original size:60 final size:58
Alignment explanation
Indices: 304135--304353 Score: 219
Period size: 58 Copynumber: 3.7 Consensus size: 58
304125 AAAATGTATG
* * *
304135 AAATTGCACCAAAGTTCCTAGATCATGAAAAATTACCTAAATGACATCAAAATTAAAAAAA
1 AAATTGCACTAAAATCCCTAGATCATGAAAAATTACCTAAATGACATCAAAATT---AAAA
* * * **
304196 AAATTGCACTAAAATCCCTAGAT-ATGGAAACTTACCTAAATGACATCAAAATTCATG
1 AAATTGCACTAAAATCCCTAGATCATGAAAAATTACCTAAATGACATCAAAATTAAAA
* * * * *
304253 AAATTACACTAAAATCCTTAAATCATGAAAAATGACCTAAATGACATCAAAA-TACATA
1 AAATTGCACTAAAATCCCTAGATCATGAAAAATTACCTAAATGACATCAAAATTA-AAA
* * *
304311 AAATT-TACATAAAAGTCCCTAGATCATGAAAAATGACTTAAAT
1 AAATTGCAC-TAAAA-TCCCTAGATCATGAAAAATTACCTAAAT
304354 TATCCTAAAA
Statistics
Matches: 134, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
57 24 0.18
58 37 0.28
59 25 0.19
60 28 0.21
61 20 0.15
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (58 bp):
AAATTGCACTAAAATCCCTAGATCATGAAAAATTACCTAAATGACATCAAAATTAAAA
Found at i:304384 original size:118 final size:118
Alignment explanation
Indices: 304156--304384 Score: 277
Period size: 118 Copynumber: 1.9 Consensus size: 118
304146 AAGTTCCTAG
* *
304156 ATCATGAAAAATTACCTAAATGACATCAAAATTAAAAAAAAAATTGCACTAAAATCCCTAGATAT
1 ATCATGAAAAATGACCTAAATGACATCAAAATTAAAAAAAAAATTACACTAAAATCCCTAGATAT
* * * * *
304221 GGAAACTTACCTAAATGACATCAAAATTCATGAAATTACACTAAAATCCTTAA
66 GAAAAATGACCTAAATGACATAAAAATACATGAAATTACACTAAAATCCTTAA
* * *
304274 ATCATGAAAAATGACCTAAATGACATCAAAA-T-ACATAAAATTTACA-TAAAAGTCCCTAGATC
1 ATCATGAAAAATGACCTAAATGACATCAAAATTAAAAAAAAAATTACACTAAAA-TCCCTAGAT-
* * *
304336 ATGAAAAATGACTTAAATTATCCTAAAAAATACATGAAATTACA-TAAAA
64 ATGAAAAATGACCTAAATGA-CAT-AAAAATACATGAAATTACACTAAAA
304385 ATTCCTATGT
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
115 5 0.05
116 19 0.20
117 16 0.17
118 37 0.39
119 17 0.18
ACGTcount: A:0.52, C:0.16, G:0.07, T:0.25
Consensus pattern (118 bp):
ATCATGAAAAATGACCTAAATGACATCAAAATTAAAAAAAAAATTACACTAAAATCCCTAGATAT
GAAAAATGACCTAAATGACATAAAAATACATGAAATTACACTAAAATCCTTAA
Found at i:305097 original size:11 final size:11
Alignment explanation
Indices: 305081--305110 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
305071 GAAGCTATCA
305081 CTCTTTTTTTT
1 CTCTTTTTTTT
305092 CTCTTTTTTTT
1 CTCTTTTTTTT
305103 CT-TTTTTT
1 CTCTTTTTT
305111 CCCTCTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.32
11 13 0.68
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
CTCTTTTTTTT
Found at i:305109 original size:19 final size:20
Alignment explanation
Indices: 305085--305135 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
305075 CTATCACTCT
*
305085 TTTTTTTCTCTTT-TTTTTC
1 TTTTTTTCTCTTTATGTTTC
305104 TTTTTTTCCCTCTTTATGTTTC
1 TTTTTTT--CTCTTTATGTTTC
305126 -TTTTTTCTCT
1 TTTTTTTCTCT
305136 CAACTAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 11 0.39
21 12 0.43
22 5 0.18
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTTTTCTCTTTATGTTTC
Found at i:305110 original size:21 final size:22
Alignment explanation
Indices: 305082--305131 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
305072 AAGCTATCAC
* *
305082 TCTTTTTTT-TCTCTTT-TTTT
1 TCTTTTTTTCCCTCTTTATGTT
305102 TCTTTTTTTCCCTCTTTATGTT
1 TCTTTTTTTCCCTCTTTATGTT
305124 TCTTTTTT
1 TCTTTTTT
305132 CTCTCAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 9 0.35
21 6 0.23
22 11 0.42
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (22 bp):
TCTTTTTTTCCCTCTTTATGTT
Found at i:307587 original size:1 final size:1
Alignment explanation
Indices: 307581--307642 Score: 70
Period size: 1 Copynumber: 62.0 Consensus size: 1
307571 AAATCTTCAC
* * ** * *
307581 TTTTTTTTTTGTTTTTTTTTTTTTTTTCTTTTTCCTTTTTTTTGTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
307643 CCAATTGCCA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.00, C:0.05, G:0.05, T:0.90
Consensus pattern (1 bp):
T
Found at i:315585 original size:20 final size:18
Alignment explanation
Indices: 315541--315589 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
315531 AAAAATTCGA
315541 CATTGTATCAAGACAAAG
1 CATTGTATCAAGACAAAG
*
315559 CATATTGTATCAATACAATAGG
1 C--ATTGTATCAAGACAA-A-G
315581 CATTGTATC
1 CATTGTATC
315590 GATATAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
20 22 0.85
21 1 0.04
22 2 0.08
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (18 bp):
CATTGTATCAAGACAAAG
Found at i:318569 original size:2 final size:2
Alignment explanation
Indices: 318564--318611 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
318554 TCTATTTGAT
318564 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
318606 AG AG AG
1 AG AG AG
318612 TATCAAAGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:319794 original size:3 final size:3
Alignment explanation
Indices: 319786--319810 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
319776 TTGGTGCTAG
319786 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
319811 ATGTGTGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:321608 original size:17 final size:16
Alignment explanation
Indices: 321571--321609 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
321561 CTTAAACCTG
*
321571 AAATGACTCAAATCTA
1 AAATGACTCAAATCGA
*
321587 AAATGACTCGAATCCGA
1 AAATGACTCAAAT-CGA
321604 AAATGA
1 AAATGA
321610 TCTAAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.21
Consensus pattern (16 bp):
AAATGACTCAAATCGA
Found at i:322475 original size:23 final size:23
Alignment explanation
Indices: 322418--322476 Score: 57
Period size: 23 Copynumber: 2.4 Consensus size: 23
322408 ATATTTATTT
* *
322418 ATTTATATTTTTTTTATCATATTAT
1 ATTT-TATTATTTTTA-CATATTAC
322443 ATTTTAATTATTTTTA-ATATTAC
1 ATTTT-ATTATTTTTACATATTAC
322466 ATTTGTATTAT
1 ATTT-TATTAT
322477 ATAATCAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 15 0.50
24 2 0.07
25 13 0.43
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (23 bp):
ATTTTATTATTTTTACATATTAC
Found at i:323259 original size:182 final size:180
Alignment explanation
Indices: 322897--323265 Score: 415
Period size: 182 Copynumber: 2.0 Consensus size: 180
322887 TAAAAGTATA
* * ** *
322897 ATTCAACCCCATCATCAATTTTGAGAAACCAACACAGCAAGGAAAAAATCGGAGAGAAAATAAGG
1 ATTCAACCACATCATCAATTTTGAGAAACCAACACAACAAGGAAAAAAAAGGAGAGAAAATAAGA
* * *
322962 TTTTAAGGAGAAAGAAAAGAGGGTTTTGGGTTTCAAATTTAGAAAGGAGTAATAATACAAAGGAA
66 TTTTAAGGAGAAAGAAAAGAAGGTTATGGGTTTCAAATTTAG--AGGAGTAAGAATACAAAGGAA
* * *
323027 AAGAATCATCGAAAAACGATAGCCTTTGGAACGATAGAACAGATGGTGAAAG
129 AAGAATCATCGAAAAACGATAGCCTCTGGAACGACAGAACAGAAGGTGAAAG
* * *
323079 ATTCAACCACATCCTTAATTTTGAGAAACCAACATAACAAGGGGAAAAAAAAAAAGGAGAGAAAA
1 ATTCAACCACATCATCAATTTTGAGAAACCAACACAACAA--GG---AAAAAAAAGGAGAGAAAA
* * **
323144 TCAGATTTTAAGGAGAAAGAAAAGAAGGTTATGGGCTTT-GAATTTAG-GGAGTAAGGTTACAAA
61 TAAGATTTTAAGGAGAAAGAAAAGAAGGTTATGGG-TTTCAAATTTAGAGGAGTAAGAATACAAA
* * * * *
323207 -GAAGAA-CAT-ATTGAAAAAGGGTAGCCTCTGGAACGACAGAACGGAAGGTGAAAG
125 GGAA-AAGAATCATCGAAAAACGATAGCCTCTGGAACGACAGAACAGAAGGTGAAAG
323261 ATTCA
1 ATTCA
323266 GTATAAATTT
Statistics
Matches: 157, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
182 78 0.50
183 5 0.03
184 17 0.11
187 54 0.34
188 3 0.02
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.20
Consensus pattern (180 bp):
ATTCAACCACATCATCAATTTTGAGAAACCAACACAACAAGGAAAAAAAAGGAGAGAAAATAAGA
TTTTAAGGAGAAAGAAAAGAAGGTTATGGGTTTCAAATTTAGAGGAGTAAGAATACAAAGGAAAA
GAATCATCGAAAAACGATAGCCTCTGGAACGACAGAACAGAAGGTGAAAG
Found at i:323731 original size:12 final size:12
Alignment explanation
Indices: 323685--323760 Score: 82
Period size: 12 Copynumber: 6.1 Consensus size: 12
323675 TGATGTGAAT
323685 AATA-TATTTATA
1 AATATTATTT-TA
323697 AATATTATTTTGTA
1 AATATTA-TTT-TA
*
323711 AATATTTATTTAA
1 AATA-TTATTTTA
*
323724 AATATTATTTTT
1 AATATTATTTTA
*
323736 AATATAATTTTA
1 AATATTATTTTA
323748 AATATTATTTTA
1 AATATTATTTTA
323760 A
1 A
323761 GTATAAATTA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
12 32 0.59
13 7 0.13
14 12 0.22
15 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (12 bp):
AATATTATTTTA
Found at i:323745 original size:24 final size:24
Alignment explanation
Indices: 323684--323780 Score: 90
Period size: 27 Copynumber: 3.8 Consensus size: 24
323674 ATGATGTGAA
323684 TAATAT-ATTTATAAATATTATTTT
1 TAATATAATTTA-AAATATTATTTT
*
323708 GTAAATATTTATTTAAAATATTATTTT
1 -T-AATA-TAATTTAAAATATTATTTT
*
323735 TAATATAATTTTAAATATTA-TTT
1 TAATATAATTTAAAATATTATTTT
323758 TAAGTATAAATTATTAAAATATT
1 TAA-TAT-AA-T-TTAAAATATT
323781 TTTAGATGAT
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
23 6 0.10
24 16 0.26
25 7 0.11
26 6 0.10
27 22 0.35
28 5 0.08
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TAATATAATTTAAAATATTATTTT
Found at i:325190 original size:12 final size:12
Alignment explanation
Indices: 325168--325209 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
325158 ATAAAATTTT
*
325168 ATTAAAATTTAA
1 ATTAAATTTTAA
*
325180 ATT-AATTTTTA
1 ATTAAATTTTAA
325191 ATTAAATTTTAA
1 ATTAAATTTTAA
325203 ATTAAAT
1 ATTAAAT
325210 ATCTAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTAAATTTTAA
Found at i:325233 original size:23 final size:23
Alignment explanation
Indices: 325168--325233 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
325158 ATAAAATTTT
* * *
325168 ATTAAAATTTAAATTAATTTTTA
1 ATTAAATTTTAAATTAATATCTA
325191 ATTAAATTTTAAATTAAATATCTA
1 ATTAAATTTTAAATT-AATATCTA
*
325215 A-TAAATCTTTACATTAATA
1 ATTAAAT-TTTAAATTAATA
325234 CGAATCAACC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 23 0.62
24 14 0.38
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTAAATTTTAAATTAATATCTA
Done.