Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold362
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 374504
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
File 1 of 3
Found at i:1317 original size:22 final size:23
Alignment explanation
Indices: 1289--1363 Score: 93
Period size: 22 Copynumber: 3.3 Consensus size: 23
1279 TAATAAAATT
1289 ATATAATATAAAAATAAT-TAAA
1 ATATAATATAAAAATAATATAAA
1311 ATATAATATAAAATATAATATATAA
1 ATATAATATAAAA-ATAATATA-AA
*
1336 ATA-AA-ATAAATATAATATAAA
1 ATATAATATAAAAATAATATAAA
1357 TATATAA
1 -ATATAA
1364 ATTTATTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
21 2 0.04
22 24 0.51
23 12 0.26
24 4 0.09
25 5 0.11
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
ATATAATATAAAAATAATATAAA
Found at i:1329 original size:34 final size:35
Alignment explanation
Indices: 1277--1363 Score: 117
Period size: 34 Copynumber: 2.5 Consensus size: 35
1267 TACTTTTAGT
*
1277 TATAATA-AAATTATATAATATAAAAAT-AATTAAAA
1 TATAATATAAA-TATATAATATAAAAATAAAAT-AAA
*
1312 TATAATATAAA-ATATAATATATAAATAAAATAAA
1 TATAATATAAATATATAATATAAAAATAAAATAAA
1346 TATAATATAAATATATAA
1 TATAATATAAATATATAA
1364 ATTTATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
34 28 0.60
35 16 0.34
36 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (35 bp):
TATAATATAAATATATAATATAAAAATAAAATAAA
Found at i:1386 original size:32 final size:31
Alignment explanation
Indices: 1345--1404 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
1335 AATAAAATAA
*
1345 ATATAATATAAATATATAAATTTATTAAATTT
1 ATATAATATAAATA-ATAAATATATTAAATTT
*
1377 ATATAATATAAGTAATAAATATATTAAA
1 ATATAATATAAATAATAAATATATTAAA
1405 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 13 0.50
32 13 0.50
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (31 bp):
ATATAATATAAATAATAAATATATTAAATTT
Found at i:1387 original size:5 final size:5
Alignment explanation
Indices: 1277--1363 Score: 53
Period size: 5 Copynumber: 18.0 Consensus size: 5
1267 TACTTTTAGT
* * *
1277 TATAA TA-AA -ATTA TATAA TATAAA AATAA TTAAAA TATAA TATAAAA
1 TATAA TATAA TATAA TATAA TAT-AA TATAA -TATAA TATAA TAT--AA
*
1324 TATAA TAT-A TA-AA TAAAA TA-AA TATAA TATAA -AT-A TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1364 ATTTATTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 22
0.70 0.06 0.24
Matches are distributed among these distances:
3 2 0.03
4 17 0.26
5 34 0.52
6 7 0.11
7 5 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (5 bp):
TATAA
Found at i:1434 original size:21 final size:21
Alignment explanation
Indices: 1410--1450 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1400 TTAAAACTTT
* *
1410 TAAAACTTATACATAATAAGG
1 TAAAACATATAAATAATAAGG
*
1431 TAAAACATATAAATTATAAG
1 TAAAACATATAAATAATAAG
1451 AAAAAAAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.29
Consensus pattern (21 bp):
TAAAACATATAAATAATAAGG
Found at i:3271 original size:31 final size:31
Alignment explanation
Indices: 3236--3339 Score: 110
Period size: 31 Copynumber: 3.5 Consensus size: 31
3226 CAAATTCGCA
3236 TTCTCCCCCTTAATCATAAGCACTTATCTCT
1 TTCTCCCCCTTAATCATAAGCACTTATCTCT
** ** * *
3267 TTCT-CCCC--AATTTTAA-CAAAT-TCGCA
1 TTCTCCCCCTTAATCATAAGCACTTATCTCT
3293 TTCTCCCCCTTAATCATAAGCACTTATCTCT
1 TTCTCCCCCTTAATCATAAGCACTTATCTCT
*
3324 TTCTCCTCCTTAATCA
1 TTCTCCCCCTTAATCA
3340 AAAATTTATT
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
26 7 0.13
27 7 0.13
28 6 0.11
29 6 0.11
30 7 0.13
31 22 0.40
ACGTcount: A:0.24, C:0.35, G:0.03, T:0.38
Consensus pattern (31 bp):
TTCTCCCCCTTAATCATAAGCACTTATCTCT
Found at i:3282 original size:57 final size:57
Alignment explanation
Indices: 3221--3329 Score: 218
Period size: 57 Copynumber: 1.9 Consensus size: 57
3211 AATAAGGTAA
3221 TTTAACAAATTCGCATTCTCCCCCTTAATCATAAGCACTTATCTCTTTCTCCCCAAT
1 TTTAACAAATTCGCATTCTCCCCCTTAATCATAAGCACTTATCTCTTTCTCCCCAAT
3278 TTTAACAAATTCGCATTCTCCCCCTTAATCATAAGCACTTATCTCTTTCTCC
1 TTTAACAAATTCGCATTCTCCCCCTTAATCATAAGCACTTATCTCTTTCTCC
3330 TCCTTAATCA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.38
Consensus pattern (57 bp):
TTTAACAAATTCGCATTCTCCCCCTTAATCATAAGCACTTATCTCTTTCTCCCCAAT
Found at i:4989 original size:20 final size:21
Alignment explanation
Indices: 4960--5000 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
4950 TGTTTTTGAT
4960 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
4979 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
5001 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:9663 original size:9 final size:9
Alignment explanation
Indices: 9649--9682 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
9639 TCTGAGTCAC
*
9649 CATCATCAT
1 CATCATCTT
9658 CATCATCTT
1 CATCATCTT
*
9667 TATCATCTT
1 CATCATCTT
9676 CATCATC
1 CATCATC
9683 CTTGATGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.41
Consensus pattern (9 bp):
CATCATCTT
Found at i:11396 original size:13 final size:13
Alignment explanation
Indices: 11378--11402 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11368 ACATTTGGTC
11378 ATGTATCGATACA
1 ATGTATCGATACA
11391 ATGTATCGATAC
1 ATGTATCGATAC
11403 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:12372 original size:19 final size:20
Alignment explanation
Indices: 12348--12400 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
12338 CACAGCCAGA
**
12348 TGTATCGATACATGTTC-AT
1 TGTATCGATACATGGACAAT
* *
12367 TGTATCCATAAATGGACAAT
1 TGTATCGATACATGGACAAT
12387 TGTATCGATACATG
1 TGTATCGATACATG
12401 AAACTGGCAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATGGACAAT
Found at i:15859 original size:6 final size:6
Alignment explanation
Indices: 15850--15877 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
15840 GAAAAAATCA
15850 AAAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAA
15878 AAAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:15883 original size:18 final size:18
Alignment explanation
Indices: 15850--15884 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15840 GAAAAAATCA
**
15850 AAAATTAAAATTAAAATT
1 AAAATTAAAAAAAAAATT
15868 AAAATTAAAAAAAAAAT
1 AAAATTAAAAAAAAAAT
15885 AAATAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATTAAAAAAAAAATT
Found at i:15929 original size:35 final size:35
Alignment explanation
Indices: 15890--16065 Score: 300
Period size: 35 Copynumber: 5.0 Consensus size: 35
15880 AAAATAAATA
15890 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
15925 ATAAAAATGATGGCGTGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
15960 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
15995 ATAAAAATGGAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
16030 ATAAAAAT-AGAGGCATGAAATGATGGGCATGGAAT
1 ATAAAAATGA-AGGCATGGAATGATGGGCATGGAAT
16065 A
1 A
16066 ATGGGCATGG
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
35 133 1.00
ACGTcount: A:0.42, C:0.06, G:0.32, T:0.20
Consensus pattern (35 bp):
ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
Found at i:15955 original size:49 final size:49
Alignment explanation
Indices: 15901--16105 Score: 175
Period size: 49 Copynumber: 4.0 Consensus size: 49
15891 TAAAAATGAA
*
15901 GGCATGGAATGATGGGCATGGAATATAAAAATGATGGCGTGGAATGATG
1 GGCATGGAATGATGGGCATGGAATATAAAAATGATGGCATGGAATGATG
**** * ** *
15950 GGCATGGAAT-ATAAAAAT-GAAGGCAT-GGAATGATGGGCATGGAATATAAAAATGG
1 GGCATGGAATGATGGGCATGGAA--TATAAAAATGAT-GGCATGG-A-AT---GAT-G
*
16005 AGGCATGGAATGATGGGCATGGAATATAAAAATAGA-GGCATGAAATGATG
1 -GGCATGGAATGATGGGCATGGAATATAAAAAT-GATGGCATGGAATGATG
* *
16055 GGCATGGAATAATGGGCATGGAATATAAAAATGAAGGCATGGAATGATG
1 GGCATGGAATGATGGGCATGGAATATAAAAATGATGGCATGGAATGATG
16104 GG
1 GG
16106 GATAAAAAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 30
0.71 0.12 0.18
Matches are distributed among these distances:
47 3 0.02
48 12 0.10
49 64 0.53
50 2 0.02
51 4 0.03
54 4 0.03
55 2 0.02
56 18 0.15
57 7 0.06
58 5 0.04
ACGTcount: A:0.40, C:0.06, G:0.34, T:0.20
Consensus pattern (49 bp):
GGCATGGAATGATGGGCATGGAATATAAAAATGATGGCATGGAATGATG
Found at i:15975 original size:21 final size:20
Alignment explanation
Indices: 15915--16099 Score: 70
Period size: 14 Copynumber: 10.5 Consensus size: 20
15905 TGGAATGATG
15915 GGCATGGAATATAAAAATGA
1 GGCATGGAATATAAAAATGA
* *
15935 TGGCGTGG-A-AT---GATG-
1 -GGCATGGAATATAAAAATGA
15950 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATG-A
*
15971 GGCATGG-A-AT---GATG-
1 GGCATGGAATATAAAAATGA
15985 GGCATGGAATATAAAAATGGA
1 GGCATGGAATATAAAAAT-GA
*
16006 GGCATGG-A-AT---GATG-
1 GGCATGGAATATAAAAATGA
16020 GGCATGGAATATAAAAATAGA
1 GGCATGGAATATAAAAAT-GA
*
16041 GGCAT-GAA-AT---GATG-
1 GGCATGGAATATAAAAATGA
16055 GGCATGG-A-AT---AATG-
1 GGCATGGAATATAAAAATGA
16069 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATG-A
16090 GGCATGGAAT
1 GGCATGGAAT
16100 GATGGGGATA
Statistics
Matches: 125, Mismatches: 10, Indels: 58
0.65 0.05 0.30
Matches are distributed among these distances:
14 38 0.30
15 7 0.06
16 18 0.14
19 19 0.15
20 8 0.06
21 35 0.28
ACGTcount: A:0.42, C:0.06, G:0.32, T:0.21
Consensus pattern (20 bp):
GGCATGGAATATAAAAATGA
Found at i:17627 original size:51 final size:51
Alignment explanation
Indices: 17547--17665 Score: 204
Period size: 51 Copynumber: 2.3 Consensus size: 51
17537 TATTTCTGAG
*
17547 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATC-
1 GGGATACTCCAACCCCGGTTTTATCTCTAAAACATCAATTTTTCATAATCA
*
17597 GTGGATACTCCAACCTCGGTTTTATCTCTAAAACATCAATTTTTCATAATCA
1 G-GGATACTCCAACCCCGGTTTTATCTCTAAAACATCAATTTTTCATAATCA
17649 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
17666 TTATTTCTGA
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 62 0.97
52 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGTTTTATCTCTAAAACATCAATTTTTCATAATCA
Found at i:17732 original size:79 final size:79
Alignment explanation
Indices: 17599--18167 Score: 818
Period size: 79 Copynumber: 7.2 Consensus size: 79
17589 TCATAATCGT
* * *
17599 GGATACTCCAACCTCGGTTTTATCTCTAAAACATCAATTTTTCATAATCAGGGATACTCCAACCC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
17664 CGTTATTTCTGAGG
66 CGTTATTTCTGAGG
* * * *
17678 GGATACTCTAACCCCGATTTTATTTCTAAAATATTAATTTTTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
*
17743 CGTTATTTCCGAGG
66 CGTTATTTCTGAGG
* * ** *
17757 GGATACTCCAACCTCGGTTTTATCTCTAAAACATCAATTTTTCATAATCATGGATACTCTAACCC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
*
17822 CCTTATTTCTGAGG
66 CGTTATTTCTGAGG
* * *
17836 GGATACTCCAACCCCGGTTTTATCTCTAAAACATCAATTTTTCATAATCGAGGATACTCCAATCC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
*
17901 CGTTATTTCCGAGG
66 CGTTATTTCTGAGG
** *
17915 GGATACTATAACTCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
17980 CGTTATTTCTGAGG
66 CGTTATTTCTGAGG
* *
17994 GGATACTTCAACCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
18059 CGTTATTTCTGAGG
66 CGTTATTTCTGAGG
* * * * * * * *
18073 GGATACTCCAGCTCCGATTTTAGTTCCAAAACACCAATTTCTT-ACAATCAGGGATACTCCAACC
1 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTT-TTCATAATCGGGGATACTCCAACC
*
18137 CCGTTATTT-TCACGG
65 CCGTTATTTCTGA-GG
18152 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
18168 TTATTTTCAC
Statistics
Matches: 438, Mismatches: 50, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
78 2 0.00
79 434 0.99
80 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
CGTTATTTCTGAGG
Found at i:17735 original size:130 final size:130
Alignment explanation
Indices: 17502--17741 Score: 408
Period size: 130 Copynumber: 1.8 Consensus size: 130
17492 TTTAATTTTC
* * *
17502 TCAATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGATT
*
17567 TTATTTCTAAAACATCAATTTTTCATAATCGTGGATACTCCAACCTCGGTTTTATCTCTAAAACA
66 TTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCTCGGTTTTATCTCTAAAACA
* *
17632 TCAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCTAACCCCGATT
1 TCAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGATT
* *
17697 TTATTTCTAAAATATTAATTTTTCATAATCGGGGATACTCCAACC
66 TTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
17742 CCGTTATTTC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 102 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (130 bp):
TCAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGATT
TTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCTCGGTTTTATCTCTAAAACA
Found at i:18155 original size:28 final size:28
Alignment explanation
Indices: 18123--18194 Score: 144
Period size: 28 Copynumber: 2.6 Consensus size: 28
18113 CTTACAATCA
18123 GGGATACTCCAACCCCGTTATTTTCACG
1 GGGATACTCCAACCCCGTTATTTTCACG
18151 GGGATACTCCAACCCCGTTATTTTCACG
1 GGGATACTCCAACCCCGTTATTTTCACG
18179 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
18195 AGCCCTTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.22, C:0.35, G:0.18, T:0.25
Consensus pattern (28 bp):
GGGATACTCCAACCCCGTTATTTTCACG
Found at i:30694 original size:8 final size:8
Alignment explanation
Indices: 30663--30694 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
30653 TTCTCTTCTA
30663 AAAAAAAT
1 AAAAAAAT
30671 CAAAAAAAT
1 -AAAAAAAT
30680 AAAAAAAT
1 AAAAAAAT
30688 AAAAAAA
1 AAAAAAA
30695 AACAACGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.09
Consensus pattern (8 bp):
AAAAAAAT
Found at i:30695 original size:9 final size:9
Alignment explanation
Indices: 30661--30695 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
30651 CATTCTCTTC
30661 TAAAAAAAA
1 TAAAAAAAA
*
30670 TCAAAAAAA
1 TAAAAAAAA
30679 T-AAAAAAA
1 TAAAAAAAA
30687 TAAAAAAAA
1 TAAAAAAAA
30696 ACAACGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:30695 original size:17 final size:17
Alignment explanation
Indices: 30663--30695 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30653 TTCTCTTCTA
*
30663 AAAAAAATCAAAAAAAT
1 AAAAAAATAAAAAAAAT
30680 AAAAAAATAAAAAAAA
1 AAAAAAATAAAAAAAA
30696 ACAACGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAT
Found at i:31796 original size:55 final size:55
Alignment explanation
Indices: 31712--31873 Score: 220
Period size: 55 Copynumber: 2.9 Consensus size: 55
31702 CGCCTTCTCC
31712 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGA-TGCA
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACT-CA
* ** *
31767 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGTAAAACTCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACTCA
* * * *
31822 TTTTAAAGCCCACACAAGTTGGTGGC-GCTTCCTAGTCCTCAAAGAGCAGGAC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCTTCAAAGAGCAGGAC
31874 GCTCCCTCTT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
54 4 0.04
55 89 0.95
56 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (55 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACTCA
Found at i:31989 original size:55 final size:55
Alignment explanation
Indices: 31918--32086 Score: 259
Period size: 55 Copynumber: 3.1 Consensus size: 55
31908 AGGACGCCTT
* *
31918 CGCCTTTCAAAGCCCACACAAGTTGATGGCACCTTTCAGTCTTCAAAAAGCAGGA
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGCAGGA
*
31973 CGCCTTTCAAATCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGCAGGA
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGCAGGA
* * * *
32028 CTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGA
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAAAGCAGGA
32083 CGCC
1 CGCC
32087 CTCTCCTTTC
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 4 0.04
55 100 0.96
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (55 bp):
CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGCAGGA
Found at i:32045 original size:210 final size:209
Alignment explanation
Indices: 31683--32498 Score: 1118
Period size: 204 Copynumber: 3.9 Consensus size: 209
31673 TCCACTTTTC
** * *
31683 TAGTCCTCAAAGATTATGACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 TAGTCCTCAAAGAGCAGGACGCC-TCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * * *
31748 CTTCAAAGAGCAGGATGCATTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAG
65 CTTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* *
31813 TAAAACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTC
130 CAAGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTC
31878 CCTCTTTTCGCCCTT
195 CCTCTTTTCGCCCTT
* * *
31893 TAGTCCTCAAACAGTAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGATGGCACCTTTCAGT
1 TAGTCCTCAAAGAGCAGGACGCC-TCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* *
31958 CTTCAAAAAGCAGGACGCCTTTCAAATCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAG
65 CTTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* *
32023 CAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC-C
130 CAAGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTC
* *
32087 CTCTCCTTTCTCCCTT
195 C-CTCTTTTCGCCCTT
32103 TAGTCCTCAAAGAGCAGGA-----CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
1 TAGTCCTCAAAGAGCAGGACGCCTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
* * *
32163 TTCAAATAGCAGGACACCTTTCAAAGCACACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
66 TTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
*
32228 AAGACTCCTTTTAAAGCCCACACAAGTTGGTAGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTCC
131 AAGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTCC
32293 CT-TCTTTCGCCCTT
196 CTCT-TTTCGCCCTT
* *
32307 TATTCCTCAAAGAGCAGGACGCCT----TTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGT
1 TAGTCCTCAAAGAGCAGGACGCCTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGT
* * * * *
32367 CCTCAAAAAGAAGAACGCCTTCGCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCTTC
65 CTTCAAAAAGCAG---G---ACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* * * * *
32432 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAG
124 AAAGAGCAAGACTCCTTTTAAAGCCCACACAAGTTGGTGGC-GCTTCCTAGTCCTCAAAGAGCAG
32496 GAC
188 GAC
32499 TCCTTTTAAA
Statistics
Matches: 544, Mismatches: 46, Indels: 31
0.88 0.07 0.05
Matches are distributed among these distances:
204 216 0.40
205 18 0.03
208 1 0.00
209 2 0.00
210 207 0.38
211 96 0.18
212 4 0.01
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (209 bp):
TAGTCCTCAAAGAGCAGGACGCCTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
TTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
AAGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTCC
CTCTTTTCGCCCTT
Found at i:32146 original size:149 final size:150
Alignment explanation
Indices: 31949--32228 Score: 456
Period size: 149 Copynumber: 1.9 Consensus size: 150
31939 GTTGATGGCA
* *
31949 CCTTTCAGTCTTCAAAAAGCAGGACGCCTTTCAAATCCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCTTTCAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
* * *
32014 CTCAAAAAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAG
66 CTCAAAAAGCAGGACACCTTTCAAAGCACACACAAGTTGGTGGCACCTTCC-AGTCCTCAAAGAG
32078 CAGGACGCCCTCTCCTTTCTC
130 CAGGACGCCCTCTCCTTTCTC
*
32099 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCTTTCAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
* * *
32163 TTCAAATAGCAGGACACCTTTCAAAGCACACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
66 CTCAAAAAGCAGGACACCTTTCAAAGCACACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC
32228 A
131 A
32229 AGACTCCTTT
Statistics
Matches: 120, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
149 111 0.93
150 9 0.08
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (150 bp):
CCTTTCAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
CTCAAAAAGCAGGACACCTTTCAAAGCACACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC
AGGACGCCCTCTCCTTTCTC
Found at i:32174 original size:55 final size:55
Alignment explanation
Indices: 32099--32289 Score: 269
Period size: 55 Copynumber: 3.5 Consensus size: 55
32089 CTCCTTTCTC
32099 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
32153 CCTTTCAGTCTTCAAATAGCAGGACACCTTTCAAAGCACACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
32208 CCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACAAGTTGGTAGC-
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
32262 GCTTCCTAGTCCTCAAAGAGCAGGACGC
1 CCTTTC-AGTCCTCAAAGAGCAGGACGC
32290 TCCCTTCTTT
Statistics
Matches: 120, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
54 9 0.08
55 111 0.93
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:32174 original size:94 final size:95
Alignment explanation
Indices: 32004--32177 Score: 271
Period size: 94 Copynumber: 1.8 Consensus size: 95
31994 GTTGGTGGCA
* *
32004 CCTTTCAGTCCTCAAAAAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTC
1 CCTTTCAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTC
32069 CTCAAAGAGCAGGACGCCCTCTCCTTTCTC
66 CTCAAAGAGCAGGACGCCCTCTCCTTTCTC
* *
32099 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGT
1 CCTTTCAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGT
* *
32162 CTTCAAATAGCAGGAC
65 CCTCAAAGAGCAGGAC
32178 ACCTTTCAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
94 63 0.88
95 9 0.12
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (95 bp):
CCTTTCAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTC
CTCAAAGAGCAGGACGCCCTCTCCTTTCTC
Found at i:32451 original size:266 final size:266
Alignment explanation
Indices: 32122--32711 Score: 973
Period size: 266 Copynumber: 2.2 Consensus size: 266
32112 AAGAGCAGGA
* *
32122 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAATAGCAGGACACCTTTCAA
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAA
32187 AGCACACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACA
66 AGCACACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACA
* * * *
32252 AGTTGGTAGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTTCTTTCGCCCTTTATTCCTCAA
131 AGTTGGTAGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAA
* *
32317 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAAAGAAGAA
196 AGAGCAGGACGCATTTTAAAGCCCACACAAGTCGGTGGCACTTTTCTAGTCCTCAAAAAGAAGAA
32382 CGCCTT
261 CGCCTT
*
32388 CGCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAA
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAA
* *
32453 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACA
66 AGCACACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACA
* * * *
32518 AGTTGGTGGTACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCTTCAA
131 AGTTGGTAGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAA
* * * *
32583 AGAGCAGGACGCATTTTAAAGCCCACACAAGTCGGTGGCATTTTTCTAGTCCTCAAAGAGTAGGA
196 AGAGCAGGACGCATTTTAAAGCCCACACAAGTCGGTGGCACTTTTCTAGTCCTCAAAAAGAAGAA
32648 CGCCTT
261 CGCCTT
* * * *
32654 TGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGC
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGC
32712 TCTCTCCTTT
Statistics
Matches: 300, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
266 300 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (266 bp):
CGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAA
AGCACACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACA
AGTTGGTAGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAA
AGAGCAGGACGCATTTTAAAGCCCACACAAGTCGGTGGCACTTTTCTAGTCCTCAAAAAGAAGAA
CGCCTT
Found at i:32462 original size:55 final size:56
Alignment explanation
Indices: 32310--32555 Score: 318
Period size: 55 Copynumber: 4.3 Consensus size: 56
32300 CGCCCTTTAT
* *
32310 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAG
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTAG
* ** *
32366 TCCTCAAAAAGAAGAACGCCTTCGCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTC-AG
1 TCCTC--AAAG-AGCA-G--GACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTAG
*
32427 TCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AG
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTAG
* * * *
32482 TCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGTA-CTTCCTAG
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTAG
32537 TCCTCAAAGAGCAGGACGC
1 TCCTCAAAGAGCAGGACGC
32556 TCTCTCCTTT
Statistics
Matches: 166, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
54 4 0.02
55 101 0.61
56 5 0.03
57 1 0.01
58 7 0.04
59 7 0.04
60 1 0.01
61 6 0.04
62 34 0.20
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (56 bp):
TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTAG
Found at i:32709 original size:156 final size:151
Alignment explanation
Indices: 32419--32860 Score: 635
Period size: 156 Copynumber: 2.9 Consensus size: 151
32409 GTTGGTGGCA
32419 CCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCTTT-AGTCTTCAAAGAGCAGGACG-CTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTC
* * *
32484 CTCAAAGAGCAGGA---C--TCCTTTTAAAGCCCACACAAGTTGGTGGTACTTCCTAGTCCTCAA
63 CTCAAAGAGTAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TTAGTCCTCAA
32544 AGAGCAGGACGCTCTCTCCTTTCAC
127 AGAGCAGGACGCTCTCTCCTTTCAC
* * *
32569 CCTTTAGTCTTCAAAGAGCAGGACGCATTTTAAAGCCCACACAAGTCGGTGGCATTTTTCTAGTC
1 CCTTTAGTCTTCAAAGAGCAGGACGC-TTTCAAAGCCCACACAAGTTGGTGGCA-CTTTC-AGTC
*
32634 CTCAAAGAGTAGGACGCCTTTGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCA
63 CTCAAAGAGTAGGACGCCTTT-CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTAGTCCTCA
*
32699 AAGAGTAGGACGCTCTCTCCTTTCAC
126 AAGAGCAGGACGCTCTCTCCTTTCAC
* *
32725 CCTTTAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGAG-GGCACCTTCAGTCC
1 CCTTTAGTCTTCAAAGAGCAGGACG-CTTTCAAAGCCCACACAAGTTG-GTGGCACTTTCAGTCC
32789 TCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAA
64 TCAAAGAGTAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT-AGTCCTCAA
32854 AGAGCAG
127 AGAGCAG
32861 AATGCTTTCT
Statistics
Matches: 263, Mismatches: 16, Indels: 22
0.87 0.05 0.07
Matches are distributed among these distances:
148 1 0.00
149 49 0.19
150 22 0.08
153 6 0.02
154 67 0.25
155 5 0.02
156 108 0.41
157 5 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (151 bp):
CCTTTAGTCTTCAAAGAGCAGGACGCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTC
AAAGAGTAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTAGTCCTCAAAGAG
CAGGACGCTCTCTCCTTTCAC
Found at i:32721 original size:61 final size:62
Alignment explanation
Indices: 32600--32723 Score: 189
Period size: 61 Copynumber: 2.0 Consensus size: 62
32590 GACGCATTTT
** *
32600 AAAGCCCACACAAGTCGGTGGCATTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTGCCTTTC
1 AAAGCCCACACAAGTCGGTGGCACCTTTCTAGTCCTCAAAGAGTAGGACGCCTCTGCCTTTC
*
32662 AAAGCCCACACAAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGTAGGACGCTCTCT-CCTTTC
1 AAAGCCCACACAAGTCGGTGGCACCTTTCTAGTCCTCAAAGAGTAGGACGC-CTCTGCCTTTC
32723 A
1 A
32724 CCCTTTAGTC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
61 29 0.51
62 28 0.49
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (62 bp):
AAAGCCCACACAAGTCGGTGGCACCTTTCTAGTCCTCAAAGAGTAGGACGCCTCTGCCTTTC
Found at i:32885 original size:61 final size:61
Alignment explanation
Indices: 32730--32978 Score: 261
Period size: 61 Copynumber: 4.2 Consensus size: 61
32720 TTCACCCTTT
*
32730 AGTCCTCAAAGAGCAGGACG----TC--TTTCAAAGCCCACACAAGTTGAG-GGCAC-CTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCTTTTTCAAAGCCCACACAAGTTG-GTGGCACTTTTC
* *
32784 AGTCCTCAAAGAGTAGGACGCCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTT-TCTTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * * *
32845 AGTCCTCAAAGAGCAGAATG-CTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA-TCTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCTTTTT-CAAAGCCCACACAAGTTGGTGGCACT-TTTC
** * *
32906 AGTCCTTGAAGAGCAGGACGCCTTT-TCTTTTCAAAGACCACACGAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
32967 AGTCCTCAAAGA
1 AGTCCTCAAAGA
32979 ACGGGACACA
Statistics
Matches: 161, Mismatches: 19, Indels: 23
0.79 0.09 0.11
Matches are distributed among these distances:
54 19 0.12
59 9 0.06
60 26 0.16
61 98 0.61
62 9 0.06
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (61 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:32947 original size:122 final size:121
Alignment explanation
Indices: 32755--32978 Score: 326
Period size: 122 Copynumber: 1.8 Consensus size: 121
32745 GGACGTCTTT
*
32755 CAAAGCCCACACAAGTTGAGGGCACCTTCAGTCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAG
1 CAAAGCCCACACAAGTTGAGGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAG
*
32820 CCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTTTTTG
66 ACCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTTTTTG
* * * ** *
32876 CAAATCCCACACTAGTTG-GTGGCATCTTCCAGTCCTTGAAGAGCAGGACGCCTT-TTCTTTTCA
1 CAAAGCCCACACAAGTTGAG-GGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTT-A
*
32939 AAGACCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGA
63 AAGACCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
32979 ACGGGACACA
Statistics
Matches: 91, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
120 1 0.01
121 29 0.32
122 61 0.67
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (121 bp):
CAAAGCCCACACAAGTTGAGGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAG
ACCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTTTTTG
Found at i:33670 original size:12 final size:13
Alignment explanation
Indices: 33653--33681 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
33643 GTAAAAATCA
33653 AAAATTAAAATT-
1 AAAATTAAAATTC
33665 AAAATTAAAATTC
1 AAAATTAAAATTC
33678 AAAA
1 AAAA
33682 AAATAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTAAAATTC
Found at i:33730 original size:35 final size:35
Alignment explanation
Indices: 33691--33960 Score: 468
Period size: 35 Copynumber: 7.7 Consensus size: 35
33681 AAAATAAATA
33691 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
33726 ATAAAAATAAAGGCGTGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
33761 ATAAAAATGGAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
33796 ATAAAAATGAAGGCGTGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
33831 ATAAAAATGGAGGCATGGAATGATGGGCATGAAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
33866 ATAAAAATGGAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
33901 ATAAAAATGGAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
33936 ATAAAAATGAAGGCATGGAATGATG
1 ATAAAAATGAAGGCATGGAATGATG
33961 CGGATAAAAA
Statistics
Matches: 223, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 223 1.00
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.20
Consensus pattern (35 bp):
ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
Found at i:33845 original size:21 final size:21
Alignment explanation
Indices: 33821--33886 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
33811 TGGAATGATG
33821 GGCATGGAATATAAAAATGGA
1 GGCATGGAATATAAAAATGGA
*
33842 GGCATGG-A-AT---GAT-G-
1 GGCATGGAATATAAAAATGGA
*
33856 GGCATGAAATATAAAAATGGA
1 GGCATGGAATATAAAAATGGA
33877 GGCATGGAAT
1 GGCATGGAAT
33887 GATGGGCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
14 6 0.18
15 2 0.06
16 4 0.12
19 4 0.12
20 2 0.06
21 16 0.47
ACGTcount: A:0.42, C:0.06, G:0.32, T:0.20
Consensus pattern (21 bp):
GGCATGGAATATAAAAATGGA
Found at i:35462 original size:79 final size:79
Alignment explanation
Indices: 35331--36078 Score: 1075
Period size: 79 Copynumber: 9.4 Consensus size: 79
35321 TTTAATTTTC
*
35331 TCAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
35396 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
35410 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGAATACTCCAACCCCGATT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35475 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* * *
35489 TCAATTTTTCATAATCGGGGATACTCCAACCCCTTTATTTTCGAAGGGATACTCTAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35554 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * * * * *
35568 TTAATTTCTCATAATCTGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCTCGGCT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35633 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* * *
35647 TCAATTTTTCATAATCGGAGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGATT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35712 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* * *
35726 TCAATTTTTCATAATTGGGGATATTCCAACCCCGTTATTTTCGAGGGGATACTCTAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35791 TTATTTCTTAAACA
66 TTATTTCTAAAACA
35805 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
35870 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * *
35884 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAGCTCCGATT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* * *
35949 TTAATTCCAAAATA
66 TTATTTCTAAAACA
* * * * * *
35963 CCAATTTCTCACAATTGGGGATACTCCAACCCGGTTATTTTC-ATGGAGATACTCCAACCCCGGC
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGGATACTCCAACCCCGG-
** *
36027 CCTTATTTCTAAAGCA
64 TTTTATTTCTAAAACA
* * * *
36043 TCAATTTTTTTTACAATCAGGGATACTCTAACCCCG
1 TCAA--TTTTTCATAATCGGGGATACTCCAACCCCG
36079 ATTTTATTTT
Statistics
Matches: 594, Mismatches: 71, Indels: 5
0.89 0.11 0.01
Matches are distributed among these distances:
78 1 0.00
79 556 0.94
80 13 0.02
82 24 0.04
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:40152 original size:21 final size:22
Alignment explanation
Indices: 40138--40177 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
40128 CTTCAAATTT
40138 TTTATTTTTCACTTCAAAATAC
1 TTTATTTTTCACTTCAAAATAC
40160 TTTATTTTTCA--TCAAAAT
1 TTTATTTTTCACTTCAAAAT
40178 CATCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTATTTTTCACTTCAAAATAC
Found at i:41896 original size:23 final size:23
Alignment explanation
Indices: 41870--41945 Score: 109
Period size: 23 Copynumber: 3.2 Consensus size: 23
41860 ATATTGTTTT
41870 GAAAATAAATTTTTATCAAGGGA
1 GAAAATAAATTTTTATCAAGGGA
41893 GAAAATAAATTTTTATCAA-GGA
1 GAAAATAAATTTTTATCAAGGGA
*
41915 GGAAAATAAATTTTTATTAAGGAGGA
1 -GAAAATAAATTTTTATCAA-G-GGA
41941 GAAAA
1 GAAAA
41946 ACGAAACTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
22 3 0.06
23 37 0.77
25 5 0.10
26 3 0.06
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (23 bp):
GAAAATAAATTTTTATCAAGGGA
Found at i:46734 original size:2 final size:2
Alignment explanation
Indices: 46715--46858 Score: 64
Period size: 2 Copynumber: 72.5 Consensus size: 2
46705 TTAGTAATTG
* * * *
46715 TA TA TA TG TT TA TT TA TA TA TA TA TA TA TA TA TA T- TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
46756 GA TT TA TG TA TA TA TA TA -A CA TA TA T- TA TCA -A CA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
** * ** * *
46795 TA GTA GC TA TA TA TA TA TA TA TA TC TA TGA GCG TA TA TG TG TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA T-A -TA TA TA TA TA TA
*
46838 TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA T
46859 TTTCAATAAA
Statistics
Matches: 104, Mismatches: 29, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
1 5 0.05
2 95 0.91
3 4 0.04
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.47
Consensus pattern (2 bp):
TA
Found at i:46832 original size:38 final size:35
Alignment explanation
Indices: 46731--46853 Score: 112
Period size: 36 Copynumber: 3.5 Consensus size: 35
46721 TGTTTATTTA
* *
46731 TATATATATATATATATATTA-CATAGAT-T-TATG
1 TATATATATATATATATATTATCA-ACATATATGTG
*
46764 TATATATATA-ACATATATTATCAACATATAT-TAG
1 TATATATATATATATATATTATCAACATATATGT-G
* * *
46798 TAGCTATATATATATATATATCTATGAGCGTATATGTG
1 TA--TATATATATATATATAT-TATCAACATATATGTG
46836 TATATATATATATATATA
1 TATATATATATATATATA
46854 AATATTTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
32 12 0.16
33 14 0.19
34 4 0.05
36 24 0.32
37 7 0.09
38 13 0.17
39 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (35 bp):
TATATATATATATATATATTATCAACATATATGTG
Found at i:46940 original size:31 final size:31
Alignment explanation
Indices: 46885--46967 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
46875 TGTATATATT
* * * *
46885 AAATTGCAACAAAAGTAAAGTGCATAAATT-T
1 AAATTACAA-AAAAATAAATTGCATAAATTAA
*
46916 AAATTACGAAAAAAATAAATTGCATATATTAA
1 AAATTAC-AAAAAAATAAATTGCATAAATTAA
*
46948 AAATTACAAGAAAATAAATT
1 AAATTACAAAAAAATAAATT
46968 AACTGCATGA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
31 35 0.80
32 9 0.20
ACGTcount: A:0.58, C:0.07, G:0.08, T:0.27
Consensus pattern (31 bp):
AAATTACAAAAAAATAAATTGCATAAATTAA
Found at i:48056 original size:2 final size:2
Alignment explanation
Indices: 48051--48088 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
48041 AAAAGTGATA
48051 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48089 TCATGGAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48909 original size:28 final size:27
Alignment explanation
Indices: 48870--48933 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
48860 TAAAATAAAT
48870 AATTATTATTTAATAAAACTTAATTTAA
1 AATTATTATTTAATAAAACTTAA-TTAA
* * *
48898 AATTAATT-TTTATTAATAGTTAATTAA
1 AATT-ATTATTTAATAAAACTTAATTAA
48925 AATTTATTA
1 AA-TTATTA
48934 AAACAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 9 0.30
28 18 0.60
29 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
AATTATTATTTAATAAAACTTAATTAA
Found at i:50062 original size:30 final size:30
Alignment explanation
Indices: 50026--50085 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
50016 ATGATCCGAA
50026 GTAAGACACAAAACCTCAAAGTCACATTCT
1 GTAAGACACAAAACCTCAAAGTCACATTCT
50056 GTAAGACACAAAACCTCAAAGTCACATTCT
1 GTAAGACACAAAACCTCAAAGTCACATTCT
50086 CTATGATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (30 bp):
GTAAGACACAAAACCTCAAAGTCACATTCT
Found at i:50196 original size:4 final size:4
Alignment explanation
Indices: 50187--50213 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
50177 TTGATACTCT
50187 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
50214 GATAGGTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:51392 original size:17 final size:18
Alignment explanation
Indices: 51357--51391 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
51347 TAATTTGATA
51357 GTAATTAAAAATATTTTT
1 GTAATTAAAAATATTTTT
51375 GTAATTAAAAATATTTT
1 GTAATTAAAAATATTTT
51392 GAGTAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (18 bp):
GTAATTAAAAATATTTTT
Found at i:51397 original size:19 final size:18
Alignment explanation
Indices: 51355--51397 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
51345 TTTAATTTGA
51355 TAGTAATTAAAAATATTT
1 TAGTAATTAAAAATATTT
*
51373 TTGTAATTAAAAATATTT
1 TAGTAATTAAAAATATTT
51391 TGAGTAA
1 T-AGTAA
51398 AGAAAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (18 bp):
TAGTAATTAAAAATATTT
Found at i:51403 original size:19 final size:18
Alignment explanation
Indices: 51363--51405 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
51353 GATAGTAATT
* **
51363 AAAAATATTTTTGTAATT
1 AAAAATATTTTAGTAAAG
51381 AAAAATATTTTGAGTAAAG
1 AAAAATATTTT-AGTAAAG
51400 AAAAAT
1 AAAAAT
51406 CAAAAATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.37
Consensus pattern (18 bp):
AAAAATATTTTAGTAAAG
Found at i:52447 original size:13 final size:13
Alignment explanation
Indices: 52429--52453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52419 CATAAAGTAT
52429 TGTATCGATACAA
1 TGTATCGATACAA
52442 TGTATCGATACA
1 TGTATCGATACA
52454 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:52451 original size:33 final size:33
Alignment explanation
Indices: 52409--52475 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
52399 TTCAACGATT
52409 TGTATCGATACATAAAGTATTGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTATCGATACAA
*** *
52442 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTATCGATACAA
52475 T
1 T
52476 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTATTGTATCGATACAA
Found at i:52534 original size:13 final size:13
Alignment explanation
Indices: 52516--52540 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52506 ATCACTTAAA
52516 TGTATCGATACAT
1 TGTATCGATACAT
52529 TGTATCGATACA
1 TGTATCGATACA
52541 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:62951 original size:13 final size:13
Alignment explanation
Indices: 62909--62951 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
62899 ATTGATTTTT
*
62909 AAATAAATTATGA
1 AAATAAATTATTA
62922 AAATAATATTAATTTA
1 AAATAA-ATT-A-TTA
62938 AAATAAATTATTA
1 AAATAAATTATTA
62951 A
1 A
62952 GATATTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 10 0.38
14 4 0.15
15 4 0.15
16 8 0.31
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (13 bp):
AAATAAATTATTA
Found at i:63119 original size:17 final size:17
Alignment explanation
Indices: 63084--63150 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 17
63074 AACTAATCGT
*
63084 ATGTTGTTATTATTATA
1 ATGTTATTATTATTATA
63101 ATGTTATTATTTATTTAATA
1 ATGTTATTA-TTA-TT-ATA
* * *
63121 ATATTATTAGGATATTATT
1 ATGTTATTA--TTATTATA
63140 ATGTTATTATT
1 ATGTTATTATT
63151 TTTTATTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
17 9 0.23
18 3 0.08
19 12 0.31
20 13 0.33
21 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
ATGTTATTATTATTATA
Found at i:63164 original size:26 final size:26
Alignment explanation
Indices: 63132--63181 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
63122 TATTATTAGG
63132 ATATTATTATGTT-ATTATTTTTTATT
1 ATATTATTATGTTGA-TATTTTTTATT
63158 ATATTATTATGTTGATATTTTTTA
1 ATATTATTATGTTGATATTTTTTA
63182 AAATTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (26 bp):
ATATTATTATGTTGATATTTTTTATT
Found at i:63217 original size:16 final size:17
Alignment explanation
Indices: 63198--63230 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63188 ATGAAAGATT
*
63198 TTATTATAAA-ATAATA
1 TTATTACAAATATAATA
63214 TTATTACAAATATAATA
1 TTATTACAAATATAATA
63231 ATAGTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TTATTACAAATATAATA
Found at i:63277 original size:40 final size:39
Alignment explanation
Indices: 63172--63277 Score: 101
Period size: 40 Copynumber: 2.7 Consensus size: 39
63162 TATTATGTTG
* * *
63172 ATATTTTTTAAAATTAATGAAAGATTTTATTATAAAATA
1 ATATTATTTACAATTAATGAAAGTTTTTATTATAAAATA
*
63211 ATATTA-TTACAAATATAAT-AATAGTTTTTATTATTAAAATT
1 ATATTATTTAC-AAT-TAATGAA-AGTTTTTATTA-TAAAATA
*
63252 AT-TTCATTTACAATTAATGACAGTTT
1 ATATT-ATTTACAATTAATGAAAGTTT
63278 GTTTGTATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
38 3 0.05
39 10 0.18
40 25 0.45
41 13 0.24
42 4 0.07
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (39 bp):
ATATTATTTACAATTAATGAAAGTTTTTATTATAAAATA
Found at i:63328 original size:14 final size:13
Alignment explanation
Indices: 63311--63356 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
63301 ATGTAATTAT
63311 TTTAAAATATTTAA
1 TTTAAAAT-TTTAA
**
63325 TTTAATTTGTTTAA
1 TTTAAAAT-TTTAA
63339 TTTAAAATTTTAA
1 TTTAAAATTTTAA
63352 TTTAA
1 TTTAA
63357 GTTATAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (13 bp):
TTTAAAATTTTAA
Found at i:63480 original size:31 final size:31
Alignment explanation
Indices: 63443--63506 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
63433 ATTATCTAAT
63443 AATTAAGAGTTGTAACCATCTAATTATTTTA
1 AATTAAGAGTTGTAACCATCTAATTATTTTA
* *
63474 AATTAAGGGTTGTAAGCATCTAATTATTTTA
1 AATTAAGAGTTGTAACCATCTAATTATTTTA
63505 AA
1 AA
63507 ATTTGTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (31 bp):
AATTAAGAGTTGTAACCATCTAATTATTTTA
Found at i:63595 original size:17 final size:17
Alignment explanation
Indices: 63541--63588 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
63531 TATAGTCATC
*
63541 TAATTATTTTTAAAATTA
1 TAATTA-TTTTAAAATTT
63559 TAATTATTTTAAAATTT
1 TAATTATTTTAAAATTT
63576 TAATTATTTTAAA
1 TAATTATTTTAAA
63589 TTGTTAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 23 0.79
18 6 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATTATTTTAAAATTT
Found at i:63819 original size:25 final size:25
Alignment explanation
Indices: 63788--63889 Score: 71
Period size: 25 Copynumber: 4.4 Consensus size: 25
63778 TTAAATCTAA
63788 ATAAATAAATTTATTATTATTAATT
1 ATAAATAAATTTATTATTATTAATT
* *
63813 ATAAATAAA-ATATT-TT-TTAATA
1 ATAAATAAATTTATTATTATTAATT
* *
63835 AT-AA-AAA-CTATTATTA-TATTT
1 ATAAATAAATTTATTATTATTAATT
*
63856 AT-AAT-AATATTATTTTTTATTAATT
1 ATAAATAAAT-TTA-TTATTATTAATT
63881 -TAAATAAAT
1 ATAAATAAAT
63890 ATTAATATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
20 7 0.12
21 13 0.22
22 7 0.12
23 4 0.07
24 10 0.17
25 16 0.27
26 3 0.05
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (25 bp):
ATAAATAAATTTATTATTATTAATT
Found at i:63930 original size:17 final size:16
Alignment explanation
Indices: 63909--63950 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
63899 ATAATAACTC
63909 TAATAATATGATTA-AA
1 TAATAATAT-ATTATAA
63925 TAAATAATAATATTATAA
1 T-AATAAT-ATATTATAA
63943 TAATAATA
1 TAATAATA
63951 GTAAGTGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.09
17 16 0.70
18 5 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
TAATAATATATTATAA
Found at i:64096 original size:26 final size:27
Alignment explanation
Indices: 64058--64125 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 27
64048 ATTTTTAAAA
*
64058 ATTAAAAAATAA-TATTTTAATAATTT
1 ATTAAAAATTAATTATTTTAATAATTT
*
64084 ATTATAAATTAATATTATTTTAATAATTT
1 ATTAAAAATT-A-ATTATTTTAATAATTT
64113 ATTTAAAAATTAA
1 A-TTAAAAATTAA
64126 GAATGTTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
26 8 0.23
27 1 0.03
28 2 0.06
29 16 0.46
30 8 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
ATTAAAAATTAATTATTTTAATAATTT
Found at i:64105 original size:29 final size:30
Alignment explanation
Indices: 64065--64134 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 30
64055 AAAATTAAAA
*
64065 AATAATATTTTAATAATTTA-TTATAAATT
1 AATAATATTTTAATAATTTATTTAAAAATT
*
64094 AATATTATTTTAATAATTTATTTAAAAATT
1 AATAATATTTTAATAATTTATTTAAAAATT
* *
64124 AAGAATGTTTT
1 AATAATATTTT
64135 GAGTAACGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 19 0.54
30 16 0.46
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (30 bp):
AATAATATTTTAATAATTTATTTAAAAATT
Found at i:64114 original size:13 final size:13
Alignment explanation
Indices: 64070--64116 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
64060 TAAAAAATAA
64070 TATTTTAATAATT
1 TATTTTAATAATT
*
64083 TATTATAAATTAATAT
1 TATT-TTAA-TAAT-T
64099 TATTTTAATAATT
1 TATTTTAATAATT
64112 TATTT
1 TATTT
64117 AAAAATTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 10 0.34
14 7 0.24
15 7 0.24
16 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTTTAATAATT
Found at i:64518 original size:24 final size:23
Alignment explanation
Indices: 64485--64532 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
64475 TTATTAAATT
*
64485 TATATTTTATAATTAAATTTATAA
1 TATATATTATAATTAAATTT-TAA
*
64509 TATATATTATATTTAAATTTTAA
1 TATATATTATAATTAAATTTTAA
64532 T
1 T
64533 TTAATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATATATTATAATTAAATTTTAA
Found at i:64538 original size:40 final size:37
Alignment explanation
Indices: 64470--64546 Score: 93
Period size: 37 Copynumber: 2.0 Consensus size: 37
64460 TAAATACGAT
*
64470 ATATATTATTAAATTTATATTTTATAATTAAATTTATA
1 ATATATTATTAAATTTAAATTTTATAATT-AATTTATA
*
64508 ATATA-TATTATATTTAAATTTTAATTTAATTAATTTATA
1 ATATATTATTAAATTTAAATTTT-A--TAATTAATTTATA
64547 TCATAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
37 15 0.44
38 6 0.18
39 8 0.24
40 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (37 bp):
ATATATTATTAAATTTAAATTTTATAATTAATTTATA
Found at i:64720 original size:25 final size:25
Alignment explanation
Indices: 64692--64741 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
64682 GTTACTTGTG
* *
64692 TTTAAATCTATGATAATTTTATTAT
1 TTTAAATATATGATAATTATATTAT
*
64717 TTTAAATATATGGTAATTATATTAT
1 TTTAAATATATGATAATTATATTAT
64742 ATACAAGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (25 bp):
TTTAAATATATGATAATTATATTAT
Found at i:65344 original size:32 final size:33
Alignment explanation
Indices: 65303--65377 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 33
65293 TTTAAGTTAA
65303 TTTAA-AATTTTATTTTTAT-TATTTATAATAT
1 TTTAATAATTTTATTTTTATATATTTATAATAT
* *
65334 TTTAATAATTTTATTTTTATAATATTTTTTATAT
1 TTTAATAATTTTATTTTTAT-ATATTTATAATAT
*
65368 TTTTATAATT
1 TTTAATAATT
65378 AAATTTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 5 0.13
32 14 0.37
34 19 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (33 bp):
TTTAATAATTTTATTTTTATATATTTATAATAT
Found at i:65355 original size:14 final size:14
Alignment explanation
Indices: 65303--65373 Score: 56
Period size: 14 Copynumber: 4.9 Consensus size: 14
65293 TTTAAGTTAA
*
65303 TTTAAAATTTTATT
1 TTTATAATTTTATT
*
65317 TTTATTATTTATAATAT
1 TTTATAATTT-T-AT-T
65334 TTTAATAATTTTATT
1 TTT-ATAATTTTATT
*
65349 TTTATAA-TAT-TT
1 TTTATAATTTTATT
*
65361 TTTATATTTTTAT
1 TTTATAATTTTAT
65374 AATTAAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
12 8 0.18
13 4 0.09
14 13 0.29
15 5 0.11
16 4 0.09
17 5 0.11
18 6 0.13
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTATAATTTTATT
Found at i:65369 original size:25 final size:25
Alignment explanation
Indices: 65310--65370 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
65300 TAATTTAAAA
65310 TTTTAT-TTTTATTATTTATAATAT
1 TTTTATATTTTATTATTTATAATAT
*
65334 TTTAATAATTTTATT-TTTATAATATT
1 TTTTAT-ATTTTATTATTTATAATA-T
65360 TTTTATATTTT
1 TTTTATATTTT
65371 TATAATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 5 0.16
25 14 0.44
26 13 0.41
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (25 bp):
TTTTATATTTTATTATTTATAATAT
Found at i:65371 original size:26 final size:26
Alignment explanation
Indices: 65313--65373 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
65303 TTTAAAATTT
65313 TATTTTTATTATTTATAATATTTTAA
1 TATTTTTATTATTTATAATATTTTAA
* *
65339 TAATTTTATT-TTTATAATATTTTTTA
1 TATTTTTATTATTTATAATA-TTTTAA
65365 TATTTTTAT
1 TATTTTTAT
65374 AATTAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TATTTTTATTATTTATAATATTTTAA
Found at i:65384 original size:20 final size:20
Alignment explanation
Indices: 65338--65376 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65328 TAATATTTTA
65338 ATAATTT-TATTTTTATAAT
1 ATAATTTATATTTTTATAAT
**
65357 ATTTTTTATATTTTTATAAT
1 ATAATTTATATTTTTATAAT
65377 TAAATTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
ATAATTTATATTTTTATAAT
Found at i:66052 original size:14 final size:14
Alignment explanation
Indices: 66035--66064 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
66025 ATATTAAAAA
66035 TAGTGAATAATTTT
1 TAGTGAATAATTTT
*
66049 TAGTGAATAGTTTT
1 TAGTGAATAATTTT
66063 TA
1 TA
66065 AAAAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (14 bp):
TAGTGAATAATTTT
Found at i:66595 original size:28 final size:27
Alignment explanation
Indices: 66564--66618 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
66554 TAGATTTTTA
* *
66564 TTTATTTATATTATTATATTAATTAATT
1 TTTATTTAAATTAATAT-TTAATTAATT
66592 TTTATTTAAATTAATATTTAATTAATT
1 TTTATTTAAATTAATATTTAATTAATT
66619 CGTGACACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTATTTAAATTAATATTTAATTAATT
Found at i:66596 original size:16 final size:15
Alignment explanation
Indices: 66557--66618 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 15
66547 AGTTGAATAG
*
66557 ATTTTTATTTATTTA
1 ATTTTTATTTAATTA
*
66572 TATTATTATATTAATTA
1 -ATTTTTAT-TTAATTA
66589 ATTTTTATTTAAATTA
1 ATTTTTATTT-AATTA
* *
66605 ATATTTAATTAATT
1 ATTTTTATTTAATT
66619 CGTGACACCA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
15 6 0.15
16 27 0.69
17 6 0.15
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTTTATTTAATTA
Found at i:66906 original size:22 final size:23
Alignment explanation
Indices: 66871--66913 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
66861 AATTTTTTTC
*
66871 AAAATCTATTTCAATAATCAACT
1 AAAATCTAATTCAATAATCAACT
*
66894 AAAAT-TAATTCAATGATCAA
1 AAAATCTAATTCAATAATCAA
66914 TCAATCAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAATCTAATTCAATAATCAACT
Found at i:67349 original size:7 final size:7
Alignment explanation
Indices: 67337--67403 Score: 53
Period size: 7 Copynumber: 9.3 Consensus size: 7
67327 TATTTAAATA
67337 ATTTTAT
1 ATTTTAT
67344 ATTTTAT
1 ATTTTAT
*
67351 ATTTAAT
1 ATTTTAT
* *
67358 ATTTAAA
1 ATTTTAT
67365 ATTTTAT
1 ATTTTAT
* *
67372 ATATTAA
1 ATTTTAT
67379 ATATTTAT
1 AT-TTTAT
*
67387 AATTTTAA
1 -ATTTTAT
*
67395 AATTTAT
1 ATTTTAT
67402 AT
1 AT
67404 ATACACATAT
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
7 37 0.80
8 7 0.15
9 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTTTAT
Found at i:67353 original size:23 final size:22
Alignment explanation
Indices: 67327--67393 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
67317 TTATTGTATT
67327 TATTTAAATAATTTTATATTTTA
1 TATTTAAAT-ATTTTATATTTTA
* *
67350 TATTT-AATATTTAAAATTTTA
1 TATTTAAATATTTTATATTTTA
67371 TATATTAAATA-TTTATAATTTTA
1 TAT-TTAAATATTTTAT-ATTTTA
67394 AAATTTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
21 14 0.38
22 8 0.22
23 15 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TATTTAAATATTTTATATTTTA
Found at i:67375 original size:30 final size:29
Alignment explanation
Indices: 67323--67406 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 29
67313 AAATTTATTG
* *
67323 TATTTAT-TTAAATAATTTTATAT-TT-TA
1 TATTTATATTTAA-AATTTTATATATTAAA
67350 TATTTAATATTTAAAATTTTATATATTAAA
1 TATTT-ATATTTAAAATTTTATATATTAAA
67380 TATTTATAATTTTAAAATTTATATATA
1 TATTTAT-A-TTTAAAATTT-TATATA
67407 CACATATAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
27 5 0.10
28 12 0.25
29 8 0.17
30 7 0.15
31 10 0.21
32 6 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
TATTTATATTTAAAATTTTATATATTAAA
Found at i:68042 original size:22 final size:22
Alignment explanation
Indices: 68017--68062 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
68007 AAATTTAATT
68017 ATATAAAA-TTAATTATAATATA
1 ATATAAAATTTAA-TATAATATA
*
68039 ATATAAAATTTAATATTATATA
1 ATATAAAATTTAATATAATATA
68061 AT
1 AT
68063 TATATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATAAAATTTAATATAATATA
Found at i:68052 original size:17 final size:18
Alignment explanation
Indices: 68027--68061 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
68017 ATATAAAATT
68027 AATTATAATATAATATAA
1 AATTATAATATAATATAA
*
68045 AATT-TAATATTATATAA
1 AATTATAATATAATATAA
68062 TTATATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTATAATATAATATAA
Found at i:68083 original size:27 final size:27
Alignment explanation
Indices: 68020--68095 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 27
68010 TTTAATTATA
68020 TAAAATTAATTATAATATAATATAAAATT
1 TAAAATT-A-TATAATATAATATAAAATT
*
68049 TAATATTATATAAT-T-ATATAAAATAT
1 TAAAATTATATAATATAATATAAAAT-T
68075 TAAAAATTATATAATA-AATAT
1 T-AAAATTATATAATATAATAT
68096 TATTAATATT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
25 9 0.22
26 3 0.07
27 18 0.44
28 5 0.12
29 6 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TAAAATTATATAATATAATATAAAATT
Found at i:68085 original size:25 final size:26
Alignment explanation
Indices: 68027--68085 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
68017 ATATAAAATT
68027 AATTATAATATAATATAAAATTT-AA
1 AATTATAATATAATATAAAATTTAAA
* *
68052 TATTAT-ATAATTATATAAAATATTAAA
1 AATTATAAT-ATAATATAAAAT-TTAAA
68079 AATTATA
1 AATTATA
68086 TAATAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
24 2 0.07
25 16 0.59
26 2 0.07
27 7 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTATAATATAATATAAAATTTAAA
Found at i:68487 original size:25 final size:27
Alignment explanation
Indices: 68457--68531 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 27
68447 AAAATATTGG
* * *
68457 TATTTAATTTTTTTTATTTT-TA-ATA
1 TATTTAAATATTTATATTTTATATATA
*
68482 TATTTAAATATTTATATTTTATATTTA
1 TATTTAAATATTTATATTTTATATATA
*
68509 TATTTAAATA--TATATTATATATA
1 TATTTAAATATTTATATTTTATATA
68532 ATTATATATA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
25 28 0.67
26 2 0.05
27 12 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (27 bp):
TATTTAAATATTTATATTTTATATATA
Found at i:68507 original size:13 final size:13
Alignment explanation
Indices: 68489--68513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68479 ATATATTTAA
68489 ATATTTATATTTT
1 ATATTTATATTTT
68502 ATATTTATATTT
1 ATATTTATATTT
68514 AAATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATTTATATTTT
Found at i:68513 original size:27 final size:27
Alignment explanation
Indices: 68480--68544 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
68470 TTATTTTTAA
*
68480 TATATTTAAATATTTATATT-T-TATATT
1 TATATTTAAATA--TATATTATATATAAT
68507 TATATTTAAATATATATTATATATAAT
1 TATATTTAAATATATATTATATATAAT
*
68534 TATATATAAAT
1 TATATTTAAAT
68545 GTTAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 6 0.18
26 1 0.03
27 27 0.79
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TATATTTAAATATATATTATATATAAT
Found at i:68528 original size:17 final size:17
Alignment explanation
Indices: 68501--68540 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
68491 ATTTATATTT
*
68501 TATAT-TTATATTTAAA
1 TATATATTATATATAAA
*
68517 TATATATTATATATAAT
1 TATATATTATATATAAA
68534 TATATAT
1 TATATAT
68541 AAATGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATATATTATATATAAA
Found at i:69023 original size:24 final size:24
Alignment explanation
Indices: 68949--69023 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
68939 TGCACAGCTG
*
68949 ACAAAAGATGTACTTGAATTGAGC
1 ACAAAAGATGTACTTGAAGTGAGC
* * * *
68973 ACAACTAG-TGGA-TCGCAGTGATG-
1 ACAA-AAGATGTACTTGAAGTGA-GC
68996 ACAAAAGATGTACTTGAAGTGAGC
1 ACAAAAGATGTACTTGAAGTGAGC
69020 ACAA
1 ACAA
69024 CTAATGGTGT
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
22 2 0.05
23 14 0.38
24 19 0.51
25 2 0.05
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (24 bp):
ACAAAAGATGTACTTGAAGTGAGC
Found at i:69108 original size:25 final size:26
Alignment explanation
Indices: 69054--69108 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 26
69044 GTTTTATTTA
* *
69054 ATAATTAAATCTAAATTCTAAATTAT
1 ATAATTAAATATAAATTCTAAAATAT
69080 -TAATTAAA-ATAAATT-TAAAAATAT
1 ATAATTAAATATAAATTCT-AAAATAT
69104 ATAAT
1 ATAAT
69109 ATTAATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 1 0.04
24 12 0.48
25 12 0.48
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (26 bp):
ATAATTAAATATAAATTCTAAAATAT
Found at i:69190 original size:37 final size:38
Alignment explanation
Indices: 69122--69209 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 38
69112 AATTATTAAT
69122 ATTATTTT-TATTAATATAATTAATTAATT-AAATTTTA
1 ATTATTTTATATTAATATAATTAATT-ATTAAAATTTTA
*
69159 ATTATTTTATATTAATA-AATTAAAATT-TTAAAATTTTT
1 ATTATTTTATATTAATATAATT--AATTATTAAAATTTTA
*
69197 ATT-TTTTAAATTA
1 ATTATTTTATATTA
69210 TTAATTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
37 23 0.51
38 18 0.40
39 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (38 bp):
ATTATTTTATATTAATATAATTAATTATTAAAATTTTA
Found at i:69197 original size:30 final size:29
Alignment explanation
Indices: 69140--69199 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
69130 TATTAATATA
* *
69140 ATTAATTAATTAAATTTTAATTATTTTAT
1 ATTAATAAATTAAATTTTAAATATTTTAT
69169 ATTAATAAATTAAAATTTTAAA-ATTTT-T
1 ATTAATAAATT-AAATTTTAAATATTTTAT
69197 ATT
1 ATT
69200 TTTTAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 4 0.14
29 15 0.54
30 9 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTAATAAATTAAATTTTAAATATTTTAT
Found at i:69203 original size:16 final size:17
Alignment explanation
Indices: 69184--69224 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
69174 TAAATTAAAA
*
69184 TTTTAAAATT-TTTATT
1 TTTTAAAATTATTAATT
69200 TTTT-AAATTATTAATT
1 TTTTAAAATTATTAATT
69216 TTTTAAAAT
1 TTTTAAAAT
69225 AGTCAAGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 5 0.23
16 13 0.59
17 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTAAAATTATTAATT
Found at i:70017 original size:14 final size:15
Alignment explanation
Indices: 69989--70017 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69979 ATAATCTTGT
69989 AAATACAAGGGAAAA
1 AAATACAAGGGAAAA
70004 AAATACAA-GGAAAA
1 AAATACAAGGGAAAA
70018 TTATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.69, C:0.07, G:0.17, T:0.07
Consensus pattern (15 bp):
AAATACAAGGGAAAA
Found at i:70496 original size:16 final size:16
Alignment explanation
Indices: 70425--70496 Score: 55
Period size: 16 Copynumber: 4.8 Consensus size: 16
70415 GATATTCATG
70425 TTAATATGTA--T-TA
1 TTAATATGTATTTATA
* *
70438 TTAATTTGTATTCATA
1 TTAATATGTATTTATA
70454 TTAATATGTATTT-T-
1 TTAATATGTATTTATA
* * *
70468 GTGATAGGTATTTATA
1 TTAATATGTATTTATA
*
70484 TTAATTTGTATTT
1 TTAATATGTATTT
70497 GATGAGTTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 7
0.70 0.18 0.11
Matches are distributed among these distances:
13 9 0.21
14 10 0.23
15 2 0.05
16 22 0.51
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (16 bp):
TTAATATGTATTTATA
Found at i:75956 original size:23 final size:23
Alignment explanation
Indices: 75926--75970 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
75916 GTATCTGTTC
75926 TTATTTGATTTGATACATTGTAT
1 TTATTTGATTTGATACATTGTAT
75949 TTATTTGATTTGATACATTGTA
1 TTATTTGATTTGATACATTGTA
75971 GTCAGTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.04, G:0.13, T:0.56
Consensus pattern (23 bp):
TTATTTGATTTGATACATTGTAT
Found at i:81578 original size:49 final size:49
Alignment explanation
Indices: 81452--81710 Score: 329
Period size: 49 Copynumber: 5.2 Consensus size: 49
81442 AATATTAAAT
*
81452 ATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGACGAAG
1 ATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT---GAAG
** **
81504 GCGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAG
1 ATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG
* * *
81553 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG
1 ATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG
* ** *
81602 AAAGCGCTAATATGCTGATTCAAGGCCAGCGATACCGAACTTAAAGATGAAG
1 -ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG
* * *
81654 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAA
1 ATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG
81703 ATGCCAAT
1 ATGCCAAT
81711 GTTAAAGATG
Statistics
Matches: 178, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
49 92 0.52
50 4 0.02
51 4 0.02
52 78 0.44
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (49 bp):
ATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG
Found at i:81587 original size:101 final size:101
Alignment explanation
Indices: 81452--81700 Score: 444
Period size: 101 Copynumber: 2.5 Consensus size: 101
81442 AATATTAAAT
* * * *
81452 ATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGACGAAGGCGCCAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCT
*
81517 GATTCAAGGCCAGCGATACCGGACTTAAAGATGAAG
66 GATTCAAGGCCAGCGATACCGAACTTAAAGATGAAG
*
81553 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCTAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCT
81618 GATTCAAGGCCAGCGATACCGAACTTAAAGATGAAG
66 GATTCAAGGCCAGCGATACCGAACTTAAAGATGAAG
81654 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
81701 AAATGCCAAT
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 142 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (101 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCT
GATTCAAGGCCAGCGATACCGAACTTAAAGATGAAG
Found at i:81711 original size:49 final size:49
Alignment explanation
Indices: 81352--81712 Score: 341
Period size: 52 Copynumber: 7.2 Consensus size: 49
81342 AGATGCGAAG
* * * * * * *
81352 AATGACAATGTGCTGATTTATGGCTAGCGACATTAGACTTGAAGA--AG
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA
* ** * * * *
81399 AATGCCAATGTGCTAAGACAAGGCCAGCGACATTGGGCTCAGGAATATTAA
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA--AAGATGAA
* * *
81450 ATATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGACGA
1 A-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA--A
** * * **
81502 AGGCGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAA
1 A-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA
*
81552 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGA
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA--A
* * ** *
81603 AA-GCGCTAATATGCTGATTCAAGGCCAGCGATACCGAACTTAAAGATGAA
1 AATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA
*
81653 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA
81702 AATGCCAATGT
1 AATGCCAATGT
81713 TAAAGATGCC
Statistics
Matches: 253, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
47 30 0.12
49 92 0.36
50 11 0.04
51 7 0.03
52 113 0.45
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (49 bp):
AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA
Found at i:81807 original size:122 final size:122
Alignment explanation
Indices: 81590--81822 Score: 394
Period size: 122 Copynumber: 1.9 Consensus size: 122
81580 GACATTGGAC
*
81590 TTAAAGATGACGAAAGCGCTAATATGCTGATTCAAGGCCAGCGATACCGAACTTAAAGATGAAGA
1 TTAAAGATGACGAAAGCGCCAATATGCTGATTCAAGGCCAGCGATACCGAACTTAAAGATGAAGA
81655 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAATGCCAATG
66 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAATGCCAATG
* * ** * *
81712 TTAAAGATGCCGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TTAAAGATGACGAAAGCGCCAATATGCTGATTCAAGGCCAGCGATACCGAACTTAAAGATGAAGA
*
81777 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
66 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
81823 CGAAGGCGCC
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 103 1.00
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (122 bp):
TTAAAGATGACGAAAGCGCCAATATGCTGATTCAAGGCCAGCGATACCGAACTTAAAGATGAAGA
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAATGCCAATG
Found at i:81892 original size:223 final size:223
Alignment explanation
Indices: 81489--81923 Score: 719
Period size: 223 Copynumber: 2.0 Consensus size: 223
81479 GATATTGGAC
81489 TTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGA
1 TTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGA
*
81554 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCTAATATGCTG
66 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCTG
* *
81619 ATTCAAGGCCAGCGATACCGAACTTAAAGATGAAGATGCCAATGTGCTGA-TTCAAGGCCAGCGA
131 ATTCAAGGCCAACGATACCGAACTTAAAGATGAAGATGCCAATATGCTGATTTC-AGGCCAGCGA
*
81683 CATTGGACTTAAAGATGAAAATGCCAATG
195 CATTGGACTTAAAAATGAAAATGCCAATG
* ** *
81712 TTAAAGATGCCGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGA
* *
81777 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCGCCAATATGCTG
66 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCTG
** * * *
81842 ATTCAAGGCCAACGATATTGGACTTAAAGATGAAGTTGCCGATATGCTGATTTCAGGCCAGCGAC
131 ATTCAAGGCCAACGATACCGAACTTAAAGATGAAGATGCCAATATGCTGATTTCAGGCCAGCGAC
81907 ATTGGACTTAAAAATGA
196 ATTGGACTTAAAAATGA
81924 TGTGCCAATA
Statistics
Matches: 196, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
223 193 0.98
224 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.22
Consensus pattern (223 bp):
TTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGA
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCTG
ATTCAAGGCCAACGATACCGAACTTAAAGATGAAGATGCCAATATGCTGATTTCAGGCCAGCGAC
ATTGGACTTAAAAATGAAAATGCCAATG
Found at i:82004 original size:149 final size:151
Alignment explanation
Indices: 81724--82054 Score: 413
Period size: 149 Copynumber: 2.2 Consensus size: 151
81714 AAAGATGCCG
* * * * *
81724 AAGGCGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCTAATGTGC
1 AAGGTGCCAATATGCTGATTTCAAGGCCAGCGACATTGGACTTAAAAATGAAGGTGCCAATATGC
*
81788 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGCCA
66 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCA
* * *
81853 ACGATATTGGACTTAAAGATG
131 ACGACATCGGACTTAAAGATA
* * *
81874 AAGTTGCCGATATGCTGATTTC-AGGCCAGCGACATTGGACTTAAAAATG-ATGTGCCAATATGC
1 AAGGTGCCAATATGCTGATTTCAAGGCCAGCGACATTGGACTTAAAAATGAAGGTGCCAATATGC
* ** * * *
81937 TGATTCAAGGCCAGCGATATTAGG-CTTAAAGATGGTTG-AGGTACCGATGTGCTGATTCAAGGC
66 TGATTCAAGGCCAGCGACATT-GGACTTAAAGAT-GACGAAGGCACCAATATGCTGATTCAAGGC
**
82000 CAACGACATCGGTTTTAAAGATA
129 CAACGACATCGGACTTAAAGATA
*
82023 AAGGTGCCAATATGCTGA-TTCAAAGCCAGCGA
1 AAGGTGCCAATATGCTGATTTCAAGGCCAGCGA
82055 TACTAAGCTT
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
148 3 0.02
149 104 0.68
150 44 0.29
151 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (151 bp):
AAGGTGCCAATATGCTGATTTCAAGGCCAGCGACATTGGACTTAAAAATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCA
ACGACATCGGACTTAAAGATA
Found at i:82168 original size:39 final size:39
Alignment explanation
Indices: 82114--82584 Score: 249
Period size: 39 Copynumber: 10.9 Consensus size: 39
82104 AAAGATAAAG
* *
82114 GTGCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
* * * *
82153 GTGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----T
* ** * *
82198 AAAGGTGCCAATATGCTGATTCAAGACCAGTAATACTGGGCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
* *
82241 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
*
82280 AAAGACAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGTCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
* * * * *
82328 ATGCCAATGTGCTGATTCAAGGCCAACAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
** *
82367 AAAGACAAGGTGCCAATATGCTGATTCAAGGTTAACGATATTGGTCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
* * * *
82415 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
82454 AAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
* * * * *
82502 ATGCCAATGTGCTGATTTAAGGCCAGCAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
82541 AAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
82585 ACTCAAGATA
Statistics
Matches: 328, Mismatches: 58, Indels: 83
0.70 0.12 0.18
Matches are distributed among these distances:
39 162 0.49
40 1 0.00
43 1 0.00
45 1 0.00
48 135 0.41
49 28 0.09
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
Found at i:82345 original size:87 final size:87
Alignment explanation
Indices: 81983--82584 Score: 873
Period size: 87 Copynumber: 6.9 Consensus size: 87
81973 TGAGGTACCG
* * * *
81983 ATGTGCTGATTCAAGGCCAACGACATCGGTTTTAAAGATAAAGGTGCCAATATGCTGATTCAAAG
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGG
** *
82048 CCAGCGATACTAAG-CTTGTGCCA
65 CCAGCGATA-TTGGTCTTATGCCA
* * *
82071 ATGTGCTGATTCAAGGCCAATGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGG
* * *
82136 CCAGCGATACTGGGCTTGTGCCA
65 CCAGCGATATTGGTCTTATGCCA
* * *
82159 ATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGA
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGG
** * * *
82224 CCAGTAATACTGGGCTTGTGCCA
65 CCAGCGATATTGGTCTTATGCCA
* *
82247 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTCAAGGC
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
82312 CAGCGATATTGGTCTTATGCCA
66 CAGCGATATTGGTCTTATGCCA
* *
82334 ATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGT
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
* *
82399 TAACGATATTGGTCTTATGCCA
66 CAGCGATATTGGTCTTATGCCA
* *
82421 ATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
82486 CAGCGATATTGGTCTTATGCCA
66 CAGCGATATTGGTCTTATGCCA
* * *
82508 ATGTGCTGATTTAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
1 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
82573 CAGCGATATTGG
66 CAGCGATATTGG
82585 ACTCAAGATA
Statistics
Matches: 482, Mismatches: 31, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
87 282 0.59
88 200 0.41
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (87 bp):
ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
CAGCGATATTGGTCTTATGCCA
Found at i:82616 original size:51 final size:49
Alignment explanation
Indices: 82503--82730 Score: 258
Period size: 51 Copynumber: 4.8 Consensus size: 49
82493 ATTGGTCTTA
* * * * * *
82503 TGCCAATGTGCTGATTTAAGGCCAGCAACATTGGTCTTAA-A-GACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATGA-AAGG
82551 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATAGAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGAT-G-AAAGG
*
82602 TGCCAATATACTGATTCAAGGCCAGCGATATTGGACT-----T-AAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATGAAAGG
* * * *
82645 TGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGATG-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTC-AAGATGAAAGG
82694 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
82731 TAAAAGTGCC
Statistics
Matches: 153, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
43 37 0.24
46 1 0.01
48 34 0.22
49 39 0.25
51 41 0.27
52 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATGAAAGG
Found at i:82659 original size:43 final size:43
Alignment explanation
Indices: 82597--82741 Score: 173
Period size: 43 Copynumber: 3.2 Consensus size: 43
82587 TCAAGATAGA
*
82597 AAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
82640 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT------T
*
82689 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
82732 AAAAGTGCCA
1 AAAGGTGCCA
82742 CAGAGTTGTG
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
43 46 0.55
49 38 0.45
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:82726 original size:92 final size:93
Alignment explanation
Indices: 82547--82741 Score: 304
Period size: 92 Copynumber: 2.1 Consensus size: 93
82537 TCTTAAAGAC
* *
82547 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATAGAAAAGGTGCCAATATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGACTCAAGATAG-AAAGGTGCCAATATA
82612 CTGATTCAAGGCCAGCGATATTGGACTTA
65 CTGATTCAAGGCCAGCGATATTGGACTTA
* * *
82641 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGAT-G-AAGGTGCCAATATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGACTC-AAGATAGAAAGGTGCCAATATA
82704 CTGATTCAAGGCCAGCGATATTGGACTTA
65 CTGATTCAAGGCCAGCGATATTGGACTTA
*
82733 AAAGTGCCA
1 AAGGTGCCA
82742 CAGAGTTGTG
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
92 50 0.53
94 39 0.41
95 5 0.05
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (93 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGACTCAAGATAGAAAGGTGCCAATATAC
TGATTCAAGGCCAGCGATATTGGACTTA
Found at i:82726 original size:143 final size:135
Alignment explanation
Indices: 82416--82736 Score: 444
Period size: 138 Copynumber: 2.3 Consensus size: 135
82406 ATTGGTCTTA
* * * * * * *
82416 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAAGAAAAGGTGCCAATATACTGATTC
* * * *
82481 AAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTTAAGGCCAGCAACATTGGTCTTAAAGA
66 AAGGCCAGCGATATTGGACTTATGCCAATGTGCTGATTCAAGGCCAGCAACATCGGTCTCAAAGA
82546 CAAGG
131 CAAGG
82551 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAGATAGAAAAGGTGCCAATATACTGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT-AA-A-AGAAAAGGTGCCAATATACTGA
*
82616 TTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTC
63 TTCAAGGCCAGCGATATTGGACTT--A--TGCCAATGTGCTGATTCAAGGCCAGCAACATCGGTC
*
82681 TCAAAGATGAAGG
124 TCAAAGA-CAAGG
82694 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAAG
82737 TGCCACAGAG
Statistics
Matches: 164, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
135 33 0.20
136 1 0.01
137 1 0.01
138 43 0.26
140 1 0.01
141 2 0.01
142 40 0.24
143 42 0.26
144 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (135 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAAGAAAAGGTGCCAATATACTGATTC
AAGGCCAGCGATATTGGACTTATGCCAATGTGCTGATTCAAGGCCAGCAACATCGGTCTCAAAGA
CAAGG
Found at i:82773 original size:34 final size:34
Alignment explanation
Indices: 82735--83114 Score: 372
Period size: 34 Copynumber: 11.6 Consensus size: 34
82725 TGGACTTAAA
82735 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
** *
82769 AGTGCCATGGAGTTGTGGACTTAAAAGGGAAAAG
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
* **
82803 GGTGCCACAGAGTCATGGACTTAAAAGGAAAAAG
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
* *
82837 AGTGCCA-TGAAGTTGTGGACTTAAAAGGGAAAATG
1 AGTGCCACAG-AGTTGTGGACTTAAAA-GGAAAAAG
* *
82872 -GTGCCACAGAGTCGTGAACTTAAAAGGAAAAAG
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
*
82905 AGTGCCACAGAGTTGTGGGCTTAAAA-G-----G
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
** *
82933 -GTGCCACAGAGTTGTGGGTTTTTAAAAAGAAAAAG
1 AGTGCCACAGAGTTGT-GG-ACTTAAAAGGAAAAAG
*
82968 -GTGCCACAGAGTGGTGGACTTAAAAGGAAAAAG
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
*
83001 A-TGCCACGGAGTTGTGGACTTAAAA-G-----G
1 AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
*
83028 -GTGCCAC-GAAGTTATGGACTTAAAAGGAAAAAG
1 AGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAAG
*
83061 AGTGCCAC-GAAGTCGTGGACTTAAAAGG-AAAA-
1 AGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAAG
* *
83093 AGTGCCACGGAGTAGTGGACTT
1 AGTGCCACAGAGTTGTGGACTT
83115 TTAGAAAAGA
Statistics
Matches: 290, Mismatches: 33, Indels: 48
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.00
27 37 0.13
28 4 0.01
29 6 0.02
30 1 0.00
32 20 0.07
33 50 0.17
34 148 0.51
35 23 0.08
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (34 bp):
AGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
Found at i:82938 original size:27 final size:27
Alignment explanation
Indices: 82900--83054 Score: 105
Period size: 27 Copynumber: 5.2 Consensus size: 27
82890 CTTAAAAGGA
* *
82900 AAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
**
82927 AAAAGGGTGCCACAGAGTTGTGGGTTTTT
1 AAAAGGGTGCCACAGAGTTGT-GG-ACTT
*
82956 AAAAAGAAAAAGGTGCCACAGAGTGGTGGACTT
1 -AAAAG-----GGTGCCACAGAGTTGTGGACTT
*
82989 AAAAGGAAAAAGATGCCACGGAGTTGTGGACTT
1 AAAAGG-----G-TGCCACAGAGTTGTGGACTT
*
83022 AAAAGGGTGCCAC-GAAGTTATGGACTT
1 AAAAGGGTGCCACAG-AGTTGTGGACTT
83049 AAAAGG
1 AAAAGG
83055 AAAAAGAGTG
Statistics
Matches: 104, Mismatches: 9, Indels: 30
0.73 0.06 0.21
Matches are distributed among these distances:
26 1 0.01
27 44 0.42
28 3 0.03
29 2 0.02
30 5 0.05
32 6 0.06
33 26 0.25
34 2 0.02
35 15 0.14
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTGTGGACTT
Found at i:82998 original size:33 final size:32
Alignment explanation
Indices: 82927--83114 Score: 165
Period size: 33 Copynumber: 5.8 Consensus size: 32
82917 TTGTGGGCTT
* ** *
82927 AAAAGGGTGCCACAGAGTTGTGGGTTTTTAAAAAG
1 AAAAAGGTGCCAC-GAGTTGT-GG-ACTTAAAAGG
*
82962 AAAAAGGTGCCACAGAGTGGTGGACTTAAAAGG
1 AAAAAGGTGCCAC-GAGTTGTGGACTTAAAAGG
*
82995 AAAAAGATGCCACGGAGTTGTGGACTTAAAA-G
1 AAAAAGGTGCCAC-GAGTTGTGGACTTAAAAGG
*
83027 -----GGTGCCACGAAGTTATGGACTTAAAAGG
1 AAAAAGGTGCCACG-AGTTGTGGACTTAAAAGG
*
83055 AAAAAGAGTGCCACGAAGTCGTGGACTTAAAAGG
1 AAAAAG-GTGCCACG-AGTTGTGGACTTAAAAGG
*
83089 AAAAA-GTGCCACGGAGTAGTGGACTT
1 AAAAAGGTGCCAC-GAGTTGTGGACTT
83115 TTAGAAAAGA
Statistics
Matches: 131, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
26 1 0.01
27 22 0.17
28 1 0.01
32 19 0.15
33 37 0.28
34 32 0.24
35 19 0.15
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (32 bp):
AAAAAGGTGCCACGAGTTGTGGACTTAAAAGG
Found at i:83174 original size:96 final size:93
Alignment explanation
Indices: 82725--83209 Score: 358
Period size: 96 Copynumber: 5.1 Consensus size: 93
82715 CCAGCGATAT
* * * ** *
82725 TGGACTTAAAA--GTGCCACAGAGTTGTGGA-CTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGG
1 TGGACTTAAAAGGGTGCCAC-GAGTTGTGGATTTTTAAAGAAAAAAGA-TGCCACAGAGTCGTGG
* * * **
82787 ACTTAAAAGGGAAAAGGGTGCCACAGAGTCA
64 ACTTAAAA-GGAAAAAGATGCCACGGAGTTG
* * * * * *
82818 TGGACTTAAAAGGAAAAAGAGTGCCATGAAGTTGTGGA-CTTAAAAGGGAAAATGGTGCCACAGA
1 TGGACTTAAAA-G-----G-GTGCCACG-AGTTGTGGATTTTTAAA-GAAAAAAGATGCCACAGA
* *
82882 GTCGTGAACTTAAAAGGAAAAAGAGTGCCACAGAGTTG
57 GTCGTGGACTTAAAAGGAAAAAGA-TGCCACGGAGTTG
* * * * *
82920 TGGGCTTAAAAGGGTGCCACAGAGTTGTGGGTTTTTAAAAAGAAAAAGGTGCCACAGAGTGGTGG
1 TGGACTTAAAAGGGTGCCAC-GAGTTGTGGATTTTTAAAGA-AAAAAGATGCCACAGAGTCGTGG
82985 ACTTAAAAGGAAAAAGATGCCACGGAGTTG
64 ACTTAAAAGGAAAAAGATGCCACGGAGTTG
* * * *
83015 TGGACTTAAAAGGGTGCCACGAAGTTATGGA-CTTAAAAGGAAAAAGAGTGCCAC-GAAGTCGTG
1 TGGACTTAAAAGGGTGCCACG-AGTTGTGGATTTTTAAAGAAAAAAGA-TGCCACAG-AGTCGTG
*
83078 GACTTAAAAGGAAAAAG-TGCCACGGAGTAG
63 GACTTAAAAGGAAAAAGATGCCACGGAGTTG
* * * * * *
83108 TGGACTTTTAGAAAAGATGCTACTGAGTCGTGGATTTTTGAAGAAAAAAGATGCCACTGAGTCGT
1 TGGAC--TTA-AAAGGGTGCCAC-GAGTTGTGGATTTTTAAAGAAAAAAGATGCCACAGAGTCGT
** * *
83173 GGACTTTGAA-G-AAAAGATGCCACTGAGTCG
62 GGACTTAAAAGGAAAAAGATGCCACGGAGTTG
83203 TGGACTT
1 TGGACTT
83210 TGAGAAGAGA
Statistics
Matches: 322, Mismatches: 45, Indels: 50
0.77 0.11 0.12
Matches are distributed among these distances:
93 37 0.11
94 40 0.12
95 72 0.22
96 80 0.25
97 14 0.04
101 9 0.03
102 63 0.20
103 7 0.02
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (93 bp):
TGGACTTAAAAGGGTGCCACGAGTTGTGGATTTTTAAAGAAAAAAGATGCCACAGAGTCGTGGAC
TTAAAAGGAAAAAGATGCCACGGAGTTG
Found at i:83191 original size:31 final size:31
Alignment explanation
Indices: 83056--83212 Score: 167
Period size: 31 Copynumber: 4.9 Consensus size: 31
83046 CTTAAAAGGA
**
83056 AAAAGAGTGCCAC-GAAGTCGTGGACTTAAAAGG
1 AAAAGA-TGCCACTG-AGTCGTGGACTTTGAA-G
* * *
83089 AAAA-AGTGCCACGGAGTAGTGGACTTT-TAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
* *
83119 AAAAGATGCTACTGAGTCGTGGATTTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGA-CTTTGAAG
83151 AAAAAAGATGCCACTGAGTCGTGGACTTTGAAG
1 --AAAAGATGCCACTGAGTCGTGGACTTTGAAG
83184 AAAAGATGCCACTGAGTCGTGGACTTTGA
1 AAAAGATGCCACTGAGTCGTGGACTTTGA
83213 GAAGAGAGAT
Statistics
Matches: 108, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
30 19 0.18
31 34 0.31
32 21 0.19
33 12 0.11
34 22 0.20
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (31 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:86727 original size:13 final size:13
Alignment explanation
Indices: 86709--86733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86699 CAAAGATCAG
86709 TGTATCGATACAA
1 TGTATCGATACAA
86722 TGTATCGATACA
1 TGTATCGATACA
86734 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:86801 original size:20 final size:20
Alignment explanation
Indices: 86772--86829 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
86762 GCAGTAGCTT
86772 AAAT-TGTATCGATACAAAA
1 AAATATGTATCGATACAAAA
*
86791 AAATATGTATCGATACAACA
1 AAATATGTATCGATACAAAA
***
86811 CTTTATGTATCGATACAAA
1 AAATATGTATCGATACAAA
86830 TCGTTGAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (20 bp):
AAATATGTATCGATACAAAA
Found at i:87919 original size:92 final size:92
Alignment explanation
Indices: 87723--88559 Score: 1460
Period size: 92 Copynumber: 9.1 Consensus size: 92
87713 TAAAGATGGA
* *
87723 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGAA-AAGGTGCCAAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA----GAAGAAGGTGCCAAT
*
87787 ATGCTGATTCAAGGCCAGCGATATTGGACTT
62 ATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
87818 AAAGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
87883 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
87910 AGAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
87975 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
88002 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
88067 TGATTCAAGGCCAGCTATATTGAACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
88094 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
88159 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
88186 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
* *
88251 TGATTCAAGGCCAGATATATTGAACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
88278 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
88343 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
88370 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
88435 TGATTCAAGGCCAGCTATATTGAACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
88462 AAAGGTGCCAATGTGCTGATTCAAGGCCAACTACGTTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
88527 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
88554 AGAAGG
1 A-AAGG
88560 GTTGCCACCG
Statistics
Matches: 710, Mismatches: 30, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
91 2 0.00
92 661 0.93
93 4 0.01
95 43 0.06
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:88303 original size:21 final size:21
Alignment explanation
Indices: 88236--88303 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
88226 CTTAAAGAAG
88236 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
** *
88257 AA-G-GCCAGATATATTGAACTTA
1 AAGGTGCCA-ATATGCTG-A-TTC
*
88279 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
88300 AAGG
1 AAGG
88304 CCAGCTACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 4 0.11
20 7 0.20
21 9 0.26
22 5 0.14
23 6 0.17
24 4 0.11
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:88717 original size:95 final size:94
Alignment explanation
Indices: 88547--88718 Score: 301
Period size: 95 Copynumber: 1.8 Consensus size: 94
88537 CCAGCTATAT
*
88547 TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAGAGGGTTGCCACCAACTTGTGTGG
1 TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAGAAGGTTGCCACCAACTTGTGTGG
88612 GCTTTAGAGAAGGTTGCCGCCGACTTGTG
66 GCTTTAGAGAAGGTTGCCGCCGACTTGTG
*
88641 TGGGCTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGT
1 TGGGC-TTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTA-AAGAAGGTTGCCACCAACTTGTGT
88706 GGGCTTT-GAGAAG
64 GGGCTTTAGAGAAG
88719 AAAAAGGTTG
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
94 5 0.07
95 40 0.54
96 29 0.39
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (94 bp):
TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAGAAGGTTGCCACCAACTTGTGTGG
GCTTTAGAGAAGGTTGCCGCCGACTTGTG
Done.