Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold365
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1826335
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 8 of 11
Found at i:1188817 original size:47 final size:46
Alignment explanation
Indices: 1188702--1188864 Score: 175
Period size: 46 Copynumber: 3.5 Consensus size: 46
1188692 CACTCTAGCA
* * * * * * *
1188702 AGAAGCAGCTTCCAGCATCAATTCCAGCATCCTCCAATCCATGATC
1 AGAAGTAGCTTCTAGCATCCATTCTAGTAGCCTCCAATCCACGATC
* * * *
1188748 AGAAGTAGCTTCCAACATCCATTTTAGTAGCCTCCCATCCACGATC
1 AGAAGTAGCTTCTAGCATCCATTCTAGTAGCCTCCAATCCACGATC
* *
1188794 A-AAGGATAGCTTCTAGCATCCATTCTAGTGGCCTTCAATCCACGATC
1 AGAA-G-TAGCTTCTAGCATCCATTCTAGTAGCCTCCAATCCACGATC
*
1188841 AGAAGCAGCTTCTAGCATCCATTC
1 AGAAGTAGCTTCTAGCATCCATTC
1188865 CAGCAACTCC
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
45 2 0.02
46 57 0.58
47 37 0.38
48 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (46 bp):
AGAAGTAGCTTCTAGCATCCATTCTAGTAGCCTCCAATCCACGATC
Found at i:1189098 original size:29 final size:28
Alignment explanation
Indices: 1189066--1189182 Score: 110
Period size: 29 Copynumber: 4.1 Consensus size: 28
1189056 CCAACAACTT
* * *
1189066 CAAGTTAGTGGCATCTTTTCCAAAGCCCA
1 CAAGTTAGTGGCAAC-CTTCAAAAGCCCA
* * *
1189095 CAAGTTAGCGGTAACCTTCAAAAGCCGA
1 CAAGTTAGTGGCAACCTTCAAAAGCCCA
* * *
1189123 CAAGTCT-GTGGCATCTTTTCCAAAGCCCA
1 CAAGT-TAGTGGCAAC-CTTCAAAAGCCCA
*
1189152 CAAGTCAGTGGCAACCTTCAAAAGCCCA
1 CAAGTTAGTGGCAACCTTCAAAAGCCCA
1189180 CAA
1 CAA
1189183 TTCCGTGGCC
Statistics
Matches: 69, Mismatches: 16, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
28 34 0.49
29 35 0.51
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (28 bp):
CAAGTTAGTGGCAACCTTCAAAAGCCCA
Found at i:1189134 original size:57 final size:57
Alignment explanation
Indices: 1189073--1189191 Score: 184
Period size: 57 Copynumber: 2.1 Consensus size: 57
1189063 CTTCAAGTTA
* * * *
1189073 GTGGCATCTTTTCCAAAGCCCACAAGTTAGCGGTAACCTTCAAAAGCCGACAAGTCT
1 GTGGCATCTTTTCCAAAGCCCACAAGTCAGCGGCAACCTTCAAAAGCCCACAAGTCC
* *
1189130 GTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAATTCC
1 GTGGCATCTTTTCCAAAGCCCACAAGTCAGCGGCAACCTTCAAAAGCCCACAAGTCC
1189187 GTGGC
1 GTGGC
1189192 CCCTTGTCCT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (57 bp):
GTGGCATCTTTTCCAAAGCCCACAAGTCAGCGGCAACCTTCAAAAGCCCACAAGTCC
Found at i:1189196 original size:27 final size:28
Alignment explanation
Indices: 1189087--1189191 Score: 111
Period size: 28 Copynumber: 3.7 Consensus size: 28
1189077 CATCTTTTCC
* * *
1189087 AAAGCCCACAAGTTAGCGGTAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* * * * *
1189115 AAAGCCGACAAGTCTGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAAC-CTTCA
1189144 AAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* *
1189172 AAAGCCCACAATTCCGTGGC
1 AAAGCCCACAAGTCAGTGGC
1189192 CCCTTGTCCT
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 38 0.62
29 23 0.38
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.19
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCAACCTTCA
Found at i:1189238 original size:27 final size:27
Alignment explanation
Indices: 1189199--1189290 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
1189189 GGCCCCTTGT
* *
1189199 CCTTTTAAATCCACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
1189226 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
1189253 CCTTTTAAGTCAACAACTCCGTGGCA-
1 CCTTTTAAGTCCACAACTCCGTGGCAC
1189279 CC-TTTAAGTCCA
1 CCTTTTAAGTCCA
1189291 ATATCGTTGG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
25 9 0.15
26 2 0.03
27 48 0.81
ACGTcount: A:0.26, C:0.34, G:0.12, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:1189535 original size:92 final size:92
Alignment explanation
Indices: 1189423--1189644 Score: 363
Period size: 92 Copynumber: 2.4 Consensus size: 92
1189413 GCATTAGCAC
*
1189423 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTATGTCAAATGTCGCCGGC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTAAGTCAAATGTCGCCGGC
1189488 CTTGAATCAGCACATTGGTATCTTCAT
66 CTTGAATCAGCACATTGGTATCTTCAT
* * * * *
1189515 TTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATGTCGTCGGC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTAAGTCAAATGTCGCCGGC
1189580 CTTGAATCAGCACATTGGTATCTTCAT
66 CTTGAATCAGCACATTGGTATCTTCAT
* * *
1189607 CTTTAAATCCGATATCGTTGGCCTTGAATCAGCATATT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1189645 AGCATCTTTA
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 119 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTAAGTCAAATGTCGCCGGC
CTTGAATCAGCACATTGGTATCTTCAT
Found at i:1189542 original size:49 final size:48
Alignment explanation
Indices: 1189281--1189744 Score: 291
Period size: 43 Copynumber: 9.8 Consensus size: 48
1189271 CCGTGGCACC
* * * *
1189281 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CTTCATT
* * * * * *
1189329 TTTAAGACCAATGTTGCTGGCCTTGACTCAGTACATTGGCACCTTAACCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CTT---CATT
* * * * ** *
1189381 TTTAAGACCAATGTCGTTGGCCTTCAATCAGTGCATTAGCAC--C---
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTCATT
*
1189424 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA---CA--
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTCATT
* * * * *
1189467 TTTATGTCAAATGTCGCCGGCCTTGAATCAGCACATTGGTATCTTCATT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CTTCATT
* *
1189516 TTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCAC--C---
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTCATT
* * *
1189559 TTTAAGTCCAATGTCG-TCGGCCTTGAATCAGCACATTGGTATCTTCATC
1 TTTAAGTCCAATATCGCT-GGCCTTGAATCAGCACATTGGCA-CTTCATT
* * * * *
1189608 TTTAAATCCGATATCGTTGGCCTTGAATCAGCATATTAGCATCTTTAACATT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C-TT--CATT
** * * **
1189660 CCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGCA-TTC-TT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTCATT
* * * *
1189706 CTTCAAGTCTAATCTCGCTGGCCATGAATCAGCACATTG
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
1189745 TCATTCTTCG
Statistics
Matches: 328, Mismatches: 65, Indels: 47
0.75 0.15 0.11
Matches are distributed among these distances:
42 2 0.01
43 103 0.31
44 1 0.00
46 5 0.02
47 32 0.10
48 39 0.12
49 72 0.22
50 3 0.01
51 1 0.00
52 70 0.21
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (48 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTCATT
Found at i:1189582 original size:135 final size:138
Alignment explanation
Indices: 1189274--1189597 Score: 359
Period size: 135 Copynumber: 2.3 Consensus size: 138
1189264 AACAACTCCG
* * *
1189274 TGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCA
1 TGGCACCTTTAAGTCCAATATCGTCGGCCTTGAATCAGCATATTGGCACC---TATTTAAGACAA
* * * * * *
1189339 ATGTTGCTGGCCTTGACTCAGTACATTGGCACCTTAACCATCTTTAAGACCAATGTCGTTGGCCT
63 ATGTCGCCGGCCTTGAATCAGCACATTGGCACCTT-A-CATCTTTAAGACCAATATCGCTGGCCT
**
1189404 TCAATCAGTGCAT
126 TCAATCAGCACAT
* * *
1189417 TAGCACCTTTAAGTCCAATATCG-CTGGCCTTGAATCAGCATATTGGCA-C-ATTTATGTCAAAT
1 TGGCACCTTTAAGTCCAATATCGTC-GGCCTTGAATCAGCATATTGGCACCTATTTAAGACAAAT
* * * * * *
1189479 GTCGCCGGCCTTGAATCAGCACATTGGTATCTT-CATTTTTAAGTCTAATATCGCTGGCCTTGAA
65 GTCGCCGGCCTTGAATCAGCACATTGGCACCTTACATCTTTAAGACCAATATCGCTGGCCTTCAA
*
1189543 TCAGCATAT
130 TCAGCACAT
* *
1189552 TGGCACCTTTAAGTCCAATGTCGTCGGCCTTGAATCAGCACATTGG
1 TGGCACCTTTAAGTCCAATATCGTCGGCCTTGAATCAGCATATTGG
1189598 TATCTTCATC
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
135 72 0.46
136 1 0.01
138 36 0.23
142 1 0.01
143 45 0.29
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (138 bp):
TGGCACCTTTAAGTCCAATATCGTCGGCCTTGAATCAGCATATTGGCACCTATTTAAGACAAATG
TCGCCGGCCTTGAATCAGCACATTGGCACCTTACATCTTTAAGACCAATATCGCTGGCCTTCAAT
CAGCACAT
Found at i:1190487 original size:19 final size:18
Alignment explanation
Indices: 1190440--1190557 Score: 94
Period size: 19 Copynumber: 6.8 Consensus size: 18
1190430 ATTTCAACAA
*
1190440 TTTGTATCGATACAAACAG
1 TTTGTATCGATACATA-AG
*
1190459 TAACTGTATCGATACATAAG
1 T--TTGTATCGATACATAAG
1190479 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1190495 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1190511 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1190527 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1190543 TTTTGTATCGATACA
1 -TTTGTATCGATACA
1190558 ATGTATCGCT
Statistics
Matches: 81, Mismatches: 4, Indels: 28
0.72 0.04 0.25
Matches are distributed among these distances:
13 22 0.27
15 4 0.05
17 4 0.05
19 35 0.43
20 3 0.04
21 13 0.16
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.35
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:1190500 original size:13 final size:13
Alignment explanation
Indices: 1190482--1190538 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1190472 ACATAAGTGT
1190482 TGTATCGATACAA
1 TGTATCGATACAA
1190495 TGTATCGATACATAA
1 TGTATCGATAC--AA
1190510 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1190527 TGTATCGATACA
1 TGTATCGATACA
1190539 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1190504 original size:32 final size:32
Alignment explanation
Indices: 1190463--1190565 Score: 197
Period size: 32 Copynumber: 3.2 Consensus size: 32
1190453 AAACAGTAAC
1190463 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1190495 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
1190527 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1190559 TGTATCG
1 TGTATCG
1190566 CTACGAAGCT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 70 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1196147 original size:51 final size:51
Alignment explanation
Indices: 1196067--1196337 Score: 310
Period size: 51 Copynumber: 5.3 Consensus size: 51
1196057 TTTTTTCATC
* * * * * **
1196067 TCGGGGATACTCTAA-TCCCGGTTTCATTTCCAAAACATTAATTTCTCTTAA
1 TCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACTAATTTTTCACAA
* * * ** * *
1196118 TCGGGTATACTCCAACTCTGATTTTATTTCTAAAACACCCATTTTCCATAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAA
* *
1196169 TCGGGGAAATTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAA
* * *
1196220 TCGGGGATACTCCAACTCCGATTGTATTTTCAAAGCACTAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAA
* * ** *
1196271 TCGGGGATACTCCAATTCCGATTTTATTTTCAAAACACCGACTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAA
1196322 TCGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
1196338 CCTGTTATTT
Statistics
Matches: 186, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
51 185 0.99
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.34
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAA
Found at i:1196410 original size:79 final size:79
Alignment explanation
Indices: 1196274--1196420 Score: 208
Period size: 79 Copynumber: 1.9 Consensus size: 79
1196264 TTCACAATCG
* ** * * *
1196274 GGGATACTCCAATTCCGATTTTATTTTCAAAACACCGACTTTTCACAATCGGGGATACTCCAACC
1 GGGACACTCCAACCCCGATTTTATTTTCAAAACACCGAATTTCCACAATCGAGGATACTCCAACC
1196339 CTGTTATTTCCGAA
66 CTGTTATTTCCGAA
1196353 GGGACACTCCAACCCCGATTTTA-TTTCTAAAACACC-AATTCTCCACAATCGAGGATACTCCAA
1 GGGACACTCCAACCCCGATTTTATTTTC-AAAACACCGAATT-TCCACAATCGAGGATACTCCAA
1196416 CCCTG
64 CCCTG
1196421 ACTTTATTTC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
78 7 0.12
79 53 0.88
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.28
Consensus pattern (79 bp):
GGGACACTCCAACCCCGATTTTATTTTCAAAACACCGAATTTCCACAATCGAGGATACTCCAACC
CTGTTATTTCCGAA
Found at i:1196460 original size:51 final size:51
Alignment explanation
Indices: 1196405--1196521 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
1196395 CCACAATCGA
* *
1196405 GGATACTCCAACCCTGACTTTATTTCCAAAATATTGATTTCTCATAATCAG
1 GGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTCTCATAATCAG
** * * **
1196456 GGATACTTTAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATTGG
1 GGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTCTCATAATCAG
*
1196507 GGATGCTCCAACCCC
1 GGATACTCCAACCCC
1196522 ATTATTTTCA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (51 bp):
GGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTCTCATAATCAG
Found at i:1196469 original size:130 final size:130
Alignment explanation
Indices: 1196223--1196462 Score: 288
Period size: 130 Copynumber: 1.8 Consensus size: 130
1196213 TTCACAATCG
* * * * * * * *
1196223 GGGATACTCCAACTCCGATTGTATTTTCAAAGCACTAATTTTTCACAATCGGGGATACTCCAATT
1 GGGACACTCCAACCCCGATTGTATTTTCAAAACACCAATTCTCCACAATCGAGGATACTCCAATC
* * *
1196288 CCGATTTTATTTTCAAAACACCGACTTTTCACAATCGGGGATACTCCAACCCTGTTATTTCCGAA
66 CCGACTTTATTTCCAAAACACCGACTTTTCACAATCAGGGATACTCCAACCCTGTTATTTCCGAA
*
1196353 GGGACACTCCAACCCCGATTTTA-TTTCTAAAACACCAATTCTCCACAATCGAGGATACTCCAA-
1 GGGACACTCCAACCCCGATTGTATTTTC-AAAACACCAATTCTCCACAATCGAGGATACTCCAAT
* ** *
1196416 CCCTGACTTTATTTCCAAAATATTGA-TTTCTCATAATCAGGGATACT
65 CCC-GACTTTATTTCCAAAACACCGACTTT-TCACAATCAGGGATACT
1196463 TTAACCCCGG
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
129 9 0.10
130 82 0.90
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (130 bp):
GGGACACTCCAACCCCGATTGTATTTTCAAAACACCAATTCTCCACAATCGAGGATACTCCAATC
CCGACTTTATTTCCAAAACACCGACTTTTCACAATCAGGGATACTCCAACCCTGTTATTTCCGAA
Found at i:1196639 original size:130 final size:131
Alignment explanation
Indices: 1196405--1196719 Score: 329
Period size: 130 Copynumber: 2.4 Consensus size: 131
1196395 CCACAATCGA
* * * ** * * *
1196405 GGATACTCCAACC-CTGACTTTATTTCCAAAATATTGA-TTTCTCATAATCAGGGATACTTTAAC
1 GGATACTCCAACCTC-GATTTTACTTCCAAAACACCGATTTTCT-ATAATCGGGGACACTTCAAC
* * * *
1196468 CCCGGCCTTATTTCTAAAATATTGATTTCTCATAATTGGGGATGCTCCAACCCCATTA-TTTTC-
64 CCCGGCCTTATTTCTAAAATATCGATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTTCG
1196531 ACGG
129 A-GG
** * *
1196535 GGATACTCCAATCC-CGATTTTA-TTCTTGAAACATCTATTTTCTATAATCGGGGACACTTCAAC
1 GGATACTCCAA-CCTCGATTTTACTTC-CAAAACACCGATTTTCTATAATCGGGGACACTTCAAC
** * *
1196598 CCTTGCCTTATTTCT-AAATCATCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTC
64 CCCGGCCTTATTTCTAAAAT-ATCGATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTTC
1196662 GAGG
128 GAGG
* *
1196666 GGATACTCTAACCTCGATTTTACTTCCAAAACACCGATTTTCCATAATCGGGGA
1 GGATACTCCAACCTCGATTTTACTTCCAAAACACCGATTTTCTATAATCGGGGA
1196720 TACTCTAGCC
Statistics
Matches: 154, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
129 7 0.05
130 87 0.56
131 56 0.36
132 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.35
Consensus pattern (131 bp):
GGATACTCCAACCTCGATTTTACTTCCAAAACACCGATTTTCTATAATCGGGGACACTTCAACCC
CGGCCTTATTTCTAAAATATCGATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTTCGAG
G
Found at i:1201069 original size:21 final size:20
Alignment explanation
Indices: 1200999--1201070 Score: 58
Period size: 22 Copynumber: 3.4 Consensus size: 20
1200989 GCTAGCTTAG
*
1200999 TTTTTTCTATTTTTC-TACC
1 TTTTTTCTATTTTTCTTGCC
1201018 TATTTTTTTCTATTTTTCTTGCC
1 ---TTTTTTCTATTTTTCTTGCC
*
1201041 TTTCTTTCTATCTTTT-TTTCC
1 TTT-TTTCTAT-TTTTCTTGCC
1201062 TCTTTTTCT
1 T-TTTTTCT
1201071 TTCAACTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
20 3 0.07
21 17 0.39
22 21 0.48
23 3 0.07
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71
Consensus pattern (20 bp):
TTTTTTCTATTTTTCTTGCC
Found at i:1201771 original size:166 final size:164
Alignment explanation
Indices: 1201526--1201952 Score: 458
Period size: 166 Copynumber: 2.6 Consensus size: 164
1201516 TCAATATATA
* **
1201526 AAAAAAATCAAAATTCATG-AAATAATTTGAATTTTCCAAAA-GTAATTCAATATGAATT-TAAT
1 AAAAAATTCAAAATTCATGAAAATAA--TGAATTTTTGAAAATG-AATT-AATATGAATTAT-AT
* * * ** *
1201588 GACAATATTAGATGAATTTTAAAAATTTTAAA-TAGAGAAAAATCTC-CCTAAAAAAATTTATAA
61 AATAATATTTGATGAATTTTAAAAATTAAAAACCA-AGAAAAATCTCTCC--AAAAAATTT-T-A
1201651 C-GA-AA-AAAACTCCATATTTTCGAAAAAAGAGAATTTCAAGG
121 CGGAGAAGAAAACTCCATATTTTCGAAAAAAGAGAATTTCAAGG
1201692 AAAAAATTCAAACATTCATGAAAATGAATGAATTTTTGAAAATGAATTAATATGAATTATATAAT
1 AAAAAATTCAAA-ATTCATGAAAAT-AATGAATTTTTGAAAATGAATTAATATGAATTATATAAT
*
1201757 AATATTTGATGAATTTCAAAAATTAAAAACCAAGAAAAATCTCTCCAAAAAATTTTACGGAGAAG
64 AATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCTCTCCAAAAAATTTTACGGAGAAG
** ** * *
1201822 AAAACTCTGTATTTTTTAAATAGGAGAATTTCAAGG
129 AAAACTCCATATTTTCGAAAAAAGAGAATTTCAAGG
* * * *
1201858 AAAAAATTTAAAAATTCATGAAAATAAATGAATTTTTGAAAGCCT-ACTTAATATGAATTAAATA
1 AAAAAA-TTCAAAATTCATGAAAAT-AATGAATTTTTGAAA--ATGAATTAATATGAATTATATA
*
1201922 ATAATATTTGATAAATTTTAAAAATTAAAAA
62 ATAATATTTGATGAATTTTAAAAATTAAAAA
1201953 AAAATCCCTC
Statistics
Matches: 225, Mismatches: 23, Indels: 25
0.82 0.08 0.09
Matches are distributed among these distances:
163 2 0.01
164 3 0.01
165 11 0.05
166 123 0.55
167 78 0.35
168 6 0.03
169 2 0.01
ACGTcount: A:0.51, C:0.08, G:0.09, T:0.32
Consensus pattern (164 bp):
AAAAAATTCAAAATTCATGAAAATAATGAATTTTTGAAAATGAATTAATATGAATTATATAATAA
TATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCTCTCCAAAAAATTTTACGGAGAAGAA
AACTCCATATTTTCGAAAAAAGAGAATTTCAAGG
Found at i:1202943 original size:67 final size:67
Alignment explanation
Indices: 1202768--1202962 Score: 205
Period size: 67 Copynumber: 2.9 Consensus size: 67
1202758 ACAACTCTAG
* * * * * *
1202768 GTACTATGCTCAGCTACTTTTATTTCCATTTGTTCTACCATGTATAA-TAGTGGTGCAAAAACTC
1 GTACTATGCTCAGCTACTCTTATTTCCATTGGTTCTATCATGTA-AAGTAATGGTGTAGAAACTC
* *
1202832 TAG
65 GAA
* * *
1202835 GTACTATGCTCAGCTGCTCTTTTTTCCATTGATTCTATCATGTAAAGTAATGGTGTAGAAACTCG
1 GTACTATGCTCAGCTACTCTTATTTCCATTGGTTCTATCATGTAAAGTAATGGTGTAGAAACTCG
1202900 AA
66 AA
* * * * * *
1202902 GTACTGTGCTTAGCTACTCTTGTTGCCATTGGTTCTGTCATGTAGAG-AAGTGGTGTAGAAA
1 GTACTATGCTCAGCTACTCTTATTTCCATTGGTTCTATCATGTAAAGTAA-TGGTGTAGAAA
1202963 GACTGTAATG
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
66 4 0.04
67 103 0.96
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (67 bp):
GTACTATGCTCAGCTACTCTTATTTCCATTGGTTCTATCATGTAAAGTAATGGTGTAGAAACTCG
AA
Found at i:1204688 original size:20 final size:20
Alignment explanation
Indices: 1204663--1204715 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
1204653 ATTGAACTCA
1204663 ATGTATCGATACATTA-ATGG
1 ATGTATCGATACATTATAT-G
*
1204683 ATGTATCGATACCTTTATATG
1 ATGTATCGATA-CATTATATG
1204704 -TGTATCGATACA
1 ATGTATCGATACA
1204716 AATGAGGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 1 0.03
20 21 0.72
21 5 0.17
22 2 0.07
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTATATG
Found at i:1204808 original size:20 final size:19
Alignment explanation
Indices: 1204754--1204809 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1204744 CTACCAACAA
1204754 AATGTATCGATACAATTCAT
1 AATGTATCGATAC-ATTCAT
*
1204774 GATGTATCGATACATTACAT
1 AATGTATCGATACATT-CAT
*
1204794 AATGTATCAATACATT
1 AATGTATCGATACATT
1204810 TTCACTTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (19 bp):
AATGTATCGATACATTCAT
Found at i:1209736 original size:21 final size:21
Alignment explanation
Indices: 1209693--1209744 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
1209683 TCCTCATTTC
1209693 TATCGATACA-CATGAAAATG
1 TATCGATACATCATGAAAATG
*
1209713 TATCGATACATCATGTGAAA-G
1 TATCGATACATCATG-AAAATG
*
1209734 TATCAATACAT
1 TATCGATACAT
1209745 TTCATTGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 10 0.36
21 15 0.54
22 3 0.11
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (21 bp):
TATCGATACATCATGAAAATG
Found at i:1218091 original size:39 final size:39
Alignment explanation
Indices: 1218046--1218121 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
1218036 TCTCTTGAAG
1218046 GAGGGGTTGATGAGAACCAAGGAAAGTTCATTGAAAATA
1 GAGGGGTTGATGAGAACCAAGGAAAGTTCATTGAAAATA
1218085 GAGGGGTTGATGAGAACCAAGGAAAGTTCATTGAAAA
1 GAGGGGTTGATGAGAACCAAGGAAAGTTCATTGAAAA
1218122 CAGACCTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.08, G:0.32, T:0.20
Consensus pattern (39 bp):
GAGGGGTTGATGAGAACCAAGGAAAGTTCATTGAAAATA
Found at i:1224437 original size:25 final size:23
Alignment explanation
Indices: 1224384--1224437 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
1224374 ATCTTTCAAT
*
1224384 TTTTGTTGTCCCTTTTTTATTTTG
1 TTTT-TTGTACCTTTTTTATTTTG
*
1224408 -CTTTTGTACCTATTTTTCATTTTG
1 TTTTTTGTACCT-TTTTT-ATTTTG
1224432 TTTTTT
1 TTTTTT
1224438 TTTTGTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
22 7 0.29
23 7 0.29
24 6 0.25
25 4 0.17
ACGTcount: A:0.07, C:0.13, G:0.09, T:0.70
Consensus pattern (23 bp):
TTTTTTGTACCTTTTTTATTTTG
Found at i:1224446 original size:8 final size:8
Alignment explanation
Indices: 1224435--1224466 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
1224425 CATTTTGTTT
1224435 TTTTTTTG
1 TTTTTTTG
1224443 TTTTTTTG
1 TTTTTTTG
1224451 TTATTTTTG
1 TT-TTTTTG
1224460 TTTTTTT
1 TTTTTTT
1224467 TGACTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.03, C:0.00, G:0.09, T:0.88
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1224446 original size:9 final size:9
Alignment explanation
Indices: 1224427--1224468 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
1224417 CTATTTTTCA
1224427 TTTTGTTTT
1 TTTTGTTTT
*
1224436 TTTTTTGTTT
1 TTTTGT-TTT
*
1224446 TTTTGTTAT
1 TTTTGTTTT
1224455 TTTTGTTTT
1 TTTTGTTTT
1224464 TTTTG
1 TTTTG
1224469 ACTTTTTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (9 bp):
TTTTGTTTT
Found at i:1224451 original size:19 final size:18
Alignment explanation
Indices: 1224427--1224468 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
1224417 CTATTTTTCA
* *
1224427 TTTTGTTTTTTTTTTGTTT
1 TTTTGTTATTTTTGT-TTT
1224446 TTTTGTTATTTTTGTTTT
1 TTTTGTTATTTTTGTTTT
1224464 TTTTG
1 TTTTG
1224469 ACTTTTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (18 bp):
TTTTGTTATTTTTGTTTT
Found at i:1224474 original size:17 final size:17
Alignment explanation
Indices: 1224437--1224475 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
1224427 TTTTGTTTTT
*
1224437 TTTTTGTTTTTTTGTTA
1 TTTTTGTTTTTTTGTGA
1224454 TTTTTGTTTTTTT-TGA
1 TTTTTGTTTTTTTGTGA
1224470 CTTTTT
1 -TTTTT
1224476 CATCATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.05, C:0.03, G:0.10, T:0.82
Consensus pattern (17 bp):
TTTTTGTTTTTTTGTGA
Found at i:1229897 original size:13 final size:13
Alignment explanation
Indices: 1229879--1229904 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1229869 CAATTTTTTG
1229879 TGTATCGATACAT
1 TGTATCGATACAT
1229892 TGTATCGATACAT
1 TGTATCGATACAT
1229905 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1232304 original size:21 final size:21
Alignment explanation
Indices: 1232280--1232326 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1232270 TTTGATGCTG
1232280 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
1232300 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
1232321 ATTTTG
1 ATTTTG
1232327 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:1232466 original size:13 final size:13
Alignment explanation
Indices: 1232448--1232512 Score: 112
Period size: 13 Copynumber: 5.0 Consensus size: 13
1232438 ATAATCACCC
*
1232448 TGTATCGATACAG
1 TGTATCGATACAA
1232461 TGTATCGATACAA
1 TGTATCGATACAA
*
1232474 TGTATCGATACAG
1 TGTATCGATACAA
1232487 TGTATCGATACAA
1 TGTATCGATACAA
1232500 TGTATCGATACAA
1 TGTATCGATACAA
1232513 AGAAAAATGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1232484 original size:26 final size:26
Alignment explanation
Indices: 1232448--1232511 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
1232438 ATAATCACCC
1232448 TGTATCGATACAGTGTATCGATACAA
1 TGTATCGATACAGTGTATCGATACAA
1232474 TGTATCGATACAGTGTATCGATACAA
1 TGTATCGATACAGTGTATCGATACAA
1232500 TGTATCGATACA
1 TGTATCGATACA
1232512 AAGAAAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (26 bp):
TGTATCGATACAGTGTATCGATACAA
Found at i:1232523 original size:20 final size:20
Alignment explanation
Indices: 1232498--1232576 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
1232488 GTATCGATAC
1232498 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
1232518 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
1232543 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
1232563 CATGTATCGATACA
1 AATGTATCGATACA
1232577 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:1236458 original size:21 final size:21
Alignment explanation
Indices: 1236429--1236473 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1236419 AAGTTTTCAT
*
1236429 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1236449 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1236471 TTT
1 TTT
1236474 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1238709 original size:13 final size:13
Alignment explanation
Indices: 1238691--1238716 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1238681 CAATTTTTTG
1238691 TGTATCGATACAT
1 TGTATCGATACAT
1238704 TGTATCGATACAT
1 TGTATCGATACAT
1238717 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1238732 original size:32 final size:33
Alignment explanation
Indices: 1238668--1238734 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
1238658 CGTTACAAGT
**
1238668 CATTGTATCGATACAATTTTTTGTGTATCGATA
1 CATTGTATCGATACAATTACTTGTGTATCGATA
1238701 CATTGTATCGATAC-A-TACTTGCTGTATCGATA
1 CATTGTATCGATACAATTACTTG-TGTATCGATA
1238733 CA
1 CA
1238735 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 4 0.13
32 13 0.42
33 14 0.45
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (33 bp):
CATTGTATCGATACAATTACTTGTGTATCGATA
Found at i:1242655 original size:31 final size:32
Alignment explanation
Indices: 1242598--1242693 Score: 99
Period size: 36 Copynumber: 2.9 Consensus size: 32
1242588 CCTTACAATA
*
1242598 CTATC-TTTCAAGGCTAAAATAGAAACCTC-C-
1 CTATCTTTTCAAGGCTAAGATA-AAACCTCTCT
1242628 CTATCTTTTCACAGGCTAAGATAAAACCTTTCTCT
1 CTATCTTTTCA-AGGCTAAGATAAAACC--TCTCT
*
1242663 CTATCTTTTACAAAGGCTAAGATAGAACCTC
1 CTATCTTTT-C-AAGGCTAAGATAAAACCTC
1242694 ACAATCACTT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
30 5 0.09
31 10 0.18
32 10 0.18
33 2 0.04
34 3 0.05
35 9 0.16
36 16 0.29
37 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.31
Consensus pattern (32 bp):
CTATCTTTTCAAGGCTAAGATAAAACCTCTCT
Found at i:1243000 original size:13 final size:13
Alignment explanation
Indices: 1242982--1243006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1242972 CTGTCAGTTT
1242982 ATGTATCGATACA
1 ATGTATCGATACA
1242995 ATGTATCGATAC
1 ATGTATCGATAC
1243007 TAAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1246501 original size:21 final size:21
Alignment explanation
Indices: 1246476--1246530 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
1246466 CACTTGCAAC
*
1246476 TCATTTCTTTTCTCCTCTAAT
1 TCATTTATTTTCTCCTCTAAT
**
1246497 TCATTTATTTTCTTTTCTAAT
1 TCATTTATTTTCTCCTCTAAT
* *
1246518 TCACTTAATTTCT
1 TCATTTATTTTCT
1246531 TTTCAAGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.00, T:0.60
Consensus pattern (21 bp):
TCATTTATTTTCTCCTCTAAT
Found at i:1246531 original size:21 final size:21
Alignment explanation
Indices: 1246491--1246534 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1246481 TCTTTTCTCC
* *
1246491 TCTAATTCATTTATTTTCTTT
1 TCTAATTCACTTAATTTCTTT
1246512 TCTAATTCACTTAATTTCTTT
1 TCTAATTCACTTAATTTCTTT
1246533 TC
1 TC
1246535 AAGAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.61
Consensus pattern (21 bp):
TCTAATTCACTTAATTTCTTT
Found at i:1248632 original size:53 final size:52
Alignment explanation
Indices: 1248552--1248654 Score: 170
Period size: 53 Copynumber: 2.0 Consensus size: 52
1248542 GGACTTAATG
* *
1248552 TATCGATACTATTCACAATGTATCGATACATGAATAGTGATGAACAGTGATTT
1 TATCGATACTATTCACAATGTATCGATACATAAACAGT-ATGAACAGTGATTT
*
1248605 TATCGATAGTATTCACAATGTATCGATACATAAACAGTATGAACAGTGAT
1 TATCGATACTATTCACAATGTATCGATACATAAACAGTATGAACAGTGAT
1248655 GAACAGTGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 12 0.26
53 35 0.74
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (52 bp):
TATCGATACTATTCACAATGTATCGATACATAAACAGTATGAACAGTGATTT
Found at i:1249484 original size:18 final size:18
Alignment explanation
Indices: 1249461--1249496 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1249451 ATTGATACAT
*
1249461 TGTATCGATACATGCTCA
1 TGTATCGATACATACTCA
1249479 TGTATCGATACATACTCA
1 TGTATCGATACATACTCA
1249497 ATTATATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (18 bp):
TGTATCGATACATACTCA
Found at i:1256752 original size:13 final size:13
Alignment explanation
Indices: 1256734--1256760 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1256724 ACATTATGCT
1256734 TTGTATCGATACA
1 TTGTATCGATACA
1256747 TTGTATCGATACA
1 TTGTATCGATACA
1256760 T
1 T
1256761 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1259278 original size:159 final size:159
Alignment explanation
Indices: 1259030--1259332 Score: 588
Period size: 159 Copynumber: 1.9 Consensus size: 159
1259020 GAAAATAACC
1259030 GAATTGCAAGTTGATATTAAAAAATTGGCTAATGAAAATAATGAATTAGCGAAGAAAAACAAGAA
1 GAATTGCAAGTTGATATTAAAAAATTGGCTAATGAAAATAATGAATTAGCGAAGAAAAACAAGAA
1259095 CTTGCATGATTTATTTTCTATGTTTTACATGGCGCATCAAAAATTGAATGATATGCTTGAAACTC
66 CTTGCATGATTTATTTTCTATGTTTTACATGGCGCATCAAAAATTGAATGATATGCTTGAAACTC
*
1259160 AAAGAGCATTCTTTAATATCAACTTGCAT
131 AAAGAGCACTCTTTAATATCAACTTGCAT
*
1259189 GAATTGCAAGTTGATATTAAAAAATTGGCTAATGAAAATAATGAATTAGCTAAGAAAAACAAGAA
1 GAATTGCAAGTTGATATTAAAAAATTGGCTAATGAAAATAATGAATTAGCGAAGAAAAACAAGAA
1259254 CTTGCATGATTTATTTTCTATGTTTTACATGGCGCATCAAAAATTGAATGATATGCTTGAAACTC
66 CTTGCATGATTTATTTTCTATGTTTTACATGGCGCATCAAAAATTGAATGATATGCTTGAAACTC
1259319 AAAGAGCACTCTTT
131 AAAGAGCACTCTTT
1259333 GATAAAAACG
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
159 142 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (159 bp):
GAATTGCAAGTTGATATTAAAAAATTGGCTAATGAAAATAATGAATTAGCGAAGAAAAACAAGAA
CTTGCATGATTTATTTTCTATGTTTTACATGGCGCATCAAAAATTGAATGATATGCTTGAAACTC
AAAGAGCACTCTTTAATATCAACTTGCAT
Found at i:1265705 original size:32 final size:33
Alignment explanation
Indices: 1265647--1265709 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
1265637 CACCCAGATG
*
1265647 TATCGATACATTATGCTTTGTATTGATACATTC
1 TATCGATACATTATGCATTGTATTGATACATTC
1265680 TATCGATACATGT-T-CATTGTATTGATACAT
1 TATCGATACAT-TATGCATTGTATTGATACAT
1265710 GGGCAATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (33 bp):
TATCGATACATTATGCATTGTATTGATACATTC
Found at i:1265799 original size:33 final size:33
Alignment explanation
Indices: 1265759--1265827 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
1265749 CTACCATTGT
*
1265759 TTGTATCGATAAATGGT-ACATTGTATC-ATTACA
1 TTGTATCGATAAATGATGA-ATTGTATCGA-TACA
*
1265792 TTGTATCGATAGATGATGAATTGTATCGATACA
1 TTGTATCGATAAATGATGAATTGTATCGATACA
1265825 TTG
1 TTG
1265828 CATCTAACGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATAAATGATGAATTGTATCGATACA
Found at i:1278173 original size:14 final size:13
Alignment explanation
Indices: 1278154--1278206 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
1278144 AGCAATATTG
*
1278154 TTGTCAACAAATTT
1 TTGTCAA-AAACTT
*
1278168 TTGTCAAGAACTT
1 TTGTCAAAAACTT
* *
1278181 TTGTCAAGAACAT
1 TTGTCAAAAACTT
*
1278194 GTGTCAAAAACTT
1 TTGTCAAAAACTT
1278207 CATCAAGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 26 0.79
14 7 0.21
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTCAAAAACTT
Found at i:1278184 original size:13 final size:13
Alignment explanation
Indices: 1278166--1278206 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
1278156 GTCAACAAAT
1278166 TTTTGTCAAGAAC
1 TTTTGTCAAGAAC
1278179 TTTTGTCAAGAAC
1 TTTTGTCAAGAAC
* * *
1278192 ATGTGTCAAAAAC
1 TTTTGTCAAGAAC
1278205 TT
1 TT
1278207 CATCAAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
TTTTGTCAAGAAC
Found at i:1278283 original size:28 final size:27
Alignment explanation
Indices: 1278247--1278320 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
1278237 TTCCAAAAGC
*
1278247 CCACTAGTCAGTGGCACTTCTTCAAAAT
1 CCACAAGTCAGTGGCACTT-TTCAAAAT
** *
1278275 CCACAAGTCAGTGGCATCTTTTTGAAGT
1 CCACAAGTCAGTGGCA-CTTTTCAAAAT
1278303 CCACAA-TCAGTGGCACTT
1 CCACAAGTCAGTGGCACTT
1278321 GTTGTATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.07
27 9 0.22
28 26 0.63
29 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (27 bp):
CCACAAGTCAGTGGCACTTTTCAAAAT
Found at i:1278533 original size:32 final size:32
Alignment explanation
Indices: 1278490--1278705 Score: 151
Period size: 32 Copynumber: 6.8 Consensus size: 32
1278480 TCAGTGGAGA
* *
1278490 AACCTTCTTCAAAGGCCACACAAGTCGATAGC
1 AACCTTCTTCAAAGCCCACACAAGTCGATGGC
* * ** **
1278522 AACCTTTTTCAAAGCCCATATGAGTTTATGGC
1 AACCTTCTTCAAAGCCCACACAAGTCGATGGC
1278554 AACC-TCTTCAAAAGCCCACACAAGTCGATGGC
1 AACCTTCTTC-AAAGCCCACACAAGTCGATGGC
* * *
1278586 AACC-CCTTTAAAAGCCCACACAAGT-TAGTGGC
1 AACCTTC-TTCAAAGCCCACACAAGTCGA-TGGC
* * * *
1278618 AACC-CCTTCAAAGCCAACACAAG-CTAATGGT
1 AACCTTCTTCAAAGCCCACACAAGTC-GATGGC
*
1278649 AACCCTTCTT-AAAGCCCACACAAGT-TAGTGGC
1 AA-CCTTCTTCAAAGCCCACACAAGTCGA-TGGC
* *
1278681 AACCCT-TTCAAAAGCTCACACAAGT
1 AACCTTCTTC-AAAGCCCACACAAGT
1278706 TGGTGGCATC
Statistics
Matches: 146, Mismatches: 27, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
30 2 0.01
31 29 0.20
32 110 0.75
33 5 0.03
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.21
Consensus pattern (32 bp):
AACCTTCTTCAAAGCCCACACAAGTCGATGGC
Found at i:1278573 original size:64 final size:63
Alignment explanation
Indices: 1278490--1278705 Score: 206
Period size: 64 Copynumber: 3.4 Consensus size: 63
1278480 TCAGTGGAGA
* ** * * **
1278490 AACCTTCTTCAAAGGCCACACAAGTCGATAGCAACCTTTTTCAAAGCCCATATGAGTTTA-TGGC
1 AACC-TCTTCAAAGCCCACACAAGTCGATAGCAACCCCTTTAAAAGCCCACACAAG-TTAGTGGC
*
1278554 AACCTCTTCAAAAGCCCACACAAGTCGATGGCAACCCCTTTAAAAGCCCACACAAGTTAGTGGC
1 AACCTCTTC-AAAGCCCACACAAGTCGATAGCAACCCCTTTAAAAGCCCACACAAGTTAGTGGC
* * * * * *
1278618 AACCCCTTCAAAGCCAACACAAG-CTAATGGTAA-CCCTTCTTAAAGCCCACACAAGTTAGTGGC
1 AACCTCTTCAAAGCCCACACAAGTC-GATAGCAACCCCTT-TAAAAGCCCACACAAGTTAGTGGC
*
1278681 AACC-CTTTCAAAAGCTCACACAAGT
1 AACCTC-TTC-AAAGCCCACACAAGT
1278706 TGGTGGCATC
Statistics
Matches: 130, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
62 7 0.05
63 57 0.44
64 66 0.51
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.21
Consensus pattern (63 bp):
AACCTCTTCAAAGCCCACACAAGTCGATAGCAACCCCTTTAAAAGCCCACACAAGTTAGTGGC
Found at i:1278663 original size:63 final size:63
Alignment explanation
Indices: 1278496--1278705 Score: 196
Period size: 63 Copynumber: 3.3 Consensus size: 63
1278486 GAGAAACCTT
* * ** * * ** *
1278496 CTTCAAAGGCC-ACACAAGTCGATAGCAACCTTTTTCAAAGCCCATATGAGTTTA-TGGCAACCT
1 CTTCAAA-GCCAACACAAGTCAATGGCAACCCCTTTAAAAGCCCACACAAG-TTAGTGGCAACCC
* *
1278559 CTTCAAAAGCCCACACAAGTCGATGGCAACCCCTTTAAAAGCCCACACAAGTTAGTGGCAACCC
1 CTTC-AAAGCCAACACAAGTCAATGGCAACCCCTTTAAAAGCCCACACAAGTTAGTGGCAACCC
* *
1278623 CTTCAAAGCCAACACAAG-CTAATGGTAA-CCCTTCTTAAAGCCCACACAAGTTAGTGGCAACCC
1 CTTCAAAGCCAACACAAGTC-AATGGCAACCCCTT-TAAAAGCCCACACAAGTTAGTGGCAACCC
*
1278686 TTTCAAAAGCTC-ACACAAGT
1 CTTC-AAAGC-CAACACAAGT
1278706 TGGTGGCATC
Statistics
Matches: 126, Mismatches: 13, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
62 6 0.05
63 60 0.48
64 59 0.47
65 1 0.01
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.20
Consensus pattern (63 bp):
CTTCAAAGCCAACACAAGTCAATGGCAACCCCTTTAAAAGCCCACACAAGTTAGTGGCAACCC
Found at i:1278706 original size:32 final size:32
Alignment explanation
Indices: 1278550--1278713 Score: 176
Period size: 32 Copynumber: 5.2 Consensus size: 32
1278540 TATGAGTTTA
*
1278550 TGGCAA-CCTCTTCAAAAGCCCACACAAG-TCG
1 TGGCAACCCT-TTCAAAAGCCCACACAAGTTAG
1278581 ATGGCAACCCCTTT-AAAAGCCCACACAAGTTAG
1 -TGGCAA-CCCTTTCAAAAGCCCACACAAGTTAG
* * * *
1278614 TGGCAACCCCTTC-AAAGCCAACACAAGCTAA
1 TGGCAACCCTTTCAAAAGCCCACACAAGTTAG
* *
1278645 TGGTAACCC-TTCTTAAAGCCCACACAAGTTAG
1 TGGCAACCCTTTC-AAAAGCCCACACAAGTTAG
* *
1278677 TGGCAACCCTTTCAAAAGCTCACACAAGTTGG
1 TGGCAACCCTTTCAAAAGCCCACACAAGTTAG
1278709 TGGCA
1 TGGCA
1278714 TCTCCTTCTA
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
30 3 0.03
31 28 0.25
32 71 0.63
33 7 0.06
34 3 0.03
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (32 bp):
TGGCAACCCTTTCAAAAGCCCACACAAGTTAG
Found at i:1278833 original size:61 final size:57
Alignment explanation
Indices: 1278763--1279130 Score: 251
Period size: 52 Copynumber: 6.7 Consensus size: 57
1278753 CATTGGCACT
*
1278763 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTCTTATC
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA-C-TTATC-TC-TTCTCATC
* *
1278824 TTTAAGTCCAATGTCACTAGCCTTGAATCAGCATATTGG--C--A-C-C-T-TCATC
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACTTATCTCTTCTCATC
** * * ** *
1278873 TTTAAGTCTGATATTGCTAGCCTTGAATCAGAATATTGGCA--T-T-T-TTAACATT
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACTTATCTCTTCTCATC
* * * *
1278925 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGG--C--AT-TCTTCTCATC
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACTTATCTCTTCTCATC
* * * * * * *
1278977 TGTAAGTCTAATGTCGCTGGCCGTGAATCAGCACATT-G-AC--AT-TCTTCACATC
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACTTATCTCTTCTCATC
* * * *
1279029 TTTAAGCCCAATATCGCTAGCCTTGAGTCAACATATTGGCTCCTTTATCATCCTTCTCATC
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGC-AC-TTATC-T-CTTCTCATC
* * *
1279090 TTTAAGCCCAATATTGCTAGCCCTGAATCAGCATATTGGCA
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
1279131 TCTTTATCAC
Statistics
Matches: 244, Mismatches: 43, Indels: 41
0.74 0.13 0.12
Matches are distributed among these distances:
49 37 0.15
50 1 0.00
51 4 0.02
52 113 0.46
53 1 0.00
54 1 0.00
55 2 0.01
58 3 0.01
60 1 0.00
61 81 0.33
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (57 bp):
TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACTTATCTCTTCTCATC
Found at i:1279080 original size:104 final size:102
Alignment explanation
Indices: 1278821--1279074 Score: 294
Period size: 104 Copynumber: 2.5 Consensus size: 102
1278811 CATCTTTCTT
* * * * *
1278821 ATCTTTAAGTCCAATGTCACTAGCCTTGAATCAGCATATTGGCACC-TTCATCTTTAAGTCTGAT
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCATATTGGCTCCTTTCATCTGTAAGTCTAAT
* * * * *
1278885 ATTGCTAGCCTTGAATCAGAATATTGGCATTTTTAAC
66 ATCGCTAGCCGTGAATCAGAACATTGACATTCTTAAC
* * * *
1278922 ATTTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTGTAAGTCTA
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCATATTGGC-TCCTT-TCATCTGTAAGTCTA
* * * *
1278987 ATGTCGCTGGCCGTGAATCAGCACATTGACATTCTTCAC
64 ATATCGCTAGCCGTGAATCAGAACATTGACATTCTTAAC
* * *
1279026 ATCTTTAAGCCCAATATCGCTAGCCTTGAGTCAACATATTGGCTCCTTT
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCATATTGGCTCCTTT
1279075 ATCATCCTTC
Statistics
Matches: 125, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
101 38 0.30
102 2 0.02
103 5 0.04
104 80 0.64
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (102 bp):
ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCATATTGGCTCCTTTCATCTGTAAGTCTAAT
ATCGCTAGCCGTGAATCAGAACATTGACATTCTTAAC
Found at i:1279136 original size:61 final size:61
Alignment explanation
Indices: 1279019--1279152 Score: 182
Period size: 61 Copynumber: 2.2 Consensus size: 61
1279009 ACATTGACAT
* * *
1279019 TCTTCACATCTTTAAGCCCAATATCGCTAGCCTTGAGTCAACATATTGGCTCCTTTATCA-
1 TCTTCTCATCTTTAAGCCCAATATCGCTAGCCCTGAATCAACATATTGGCTCCTTTATCAC
* *
1279079 TCCTTCTCATCTTTAAGCCCAATATTGCTAGCCCTGAATCAGCATATTGGCAT-CTTTATCAC
1 T-CTTCTCATCTTTAAGCCCAATATCGCTAGCCCTGAATCAACATATTGGC-TCCTTTATCAC
*
1279141 TCTTTTCATCTT
1 TCTTCTCATCTT
1279153 CATCATCTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
60 1 0.02
61 62 0.95
62 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.38
Consensus pattern (61 bp):
TCTTCTCATCTTTAAGCCCAATATCGCTAGCCCTGAATCAACATATTGGCTCCTTTATCAC
Found at i:1279152 original size:18 final size:17
Alignment explanation
Indices: 1279129--1279162 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1279119 AGCATATTGG
*
1279129 CATCTTTATCACTCTTTT
1 CATCTTCATCA-TCTTTT
1279147 CATCTTCATCATCTTT
1 CATCTTCATCATCTTT
1279163 AAGTCCAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.29, G:0.00, T:0.53
Consensus pattern (17 bp):
CATCTTCATCATCTTTT
Found at i:1282081 original size:26 final size:25
Alignment explanation
Indices: 1282046--1282094 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
1282036 TTCAAAATTT
1282046 TTCGGGGATACTTCAACCCCATTCC
1 TTCGGGGATACTTCAACCCCATTCC
1282071 TTCGAGGGATACTTCAACCCCATT
1 TTCG-GGGATACTTCAACCCCATT
1282095 TTTTAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (25 bp):
TTCGGGGATACTTCAACCCCATTCC
Found at i:1284165 original size:20 final size:19
Alignment explanation
Indices: 1284140--1284212 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 19
1284130 ATTGAACTCA
1284140 ATGTATCGATACATTAATGG
1 ATGTATCGATACATTAAT-G
1284160 ATGTATCGATACATTCTAA--
1 ATGTATCGATACA-T-TAATG
1284179 ATTGTATCGATACACTTATATG
1 A-TGTATCGATACA-TTA-ATG
1284201 -TGTATCGATACA
1 ATGTATCGATACA
1284213 AATGAGGGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
19 3 0.07
20 39 0.85
21 1 0.02
22 3 0.07
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGTATCGATACATTAATG
Found at i:1286459 original size:16 final size:16
Alignment explanation
Indices: 1286440--1286490 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
1286430 AGAAAGGGGG
*
1286440 AGAAAAAAAAAGAGAA
1 AGAAAAAAAAAGAAAA
*
1286456 AGAAAAAGAAAGAAAA
1 AGAAAAAAAAAGAAAA
1286472 AGAGAGAAAAATAAGAAAA
1 AGA-A-AAAAA-AAGAAAA
1286491 TCAAACAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 17 0.59
17 1 0.03
18 4 0.14
19 7 0.24
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AGAAAAAAAAAGAAAA
Found at i:1286465 original size:22 final size:22
Alignment explanation
Indices: 1286440--1286490 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
1286430 AGAAAGGGGG
1286440 AGAAAAAAAA-AGAGAAAGAAAA
1 AGAAAAAAAAGAGAGAAA-AAAA
*
1286462 AGAAAGAAAAAGAGAGAAAAATA
1 AGAAA-AAAAAGAGAGAAAAAAA
1286485 AGAAAA
1 AGAAAA
1286491 TCAAACAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 6 0.23
23 13 0.50
24 7 0.27
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAAGAGAGAAAAAAA
Found at i:1286471 original size:24 final size:23
Alignment explanation
Indices: 1286444--1286489 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
1286434 AGGGGGAGAA
1286444 AAAAAAAGAGAAAGAAAAAGAAAG
1 AAAAAAAGAGAAA-AAAAAGAAAG
* *
1286468 AAAAAGAGAGAAAAATAAGAAA
1 AAAAAAAGAGAAAAAAAAGAAA
1286490 ATCAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
AAAAAAAGAGAAAAAAAAGAAAG
Found at i:1286481 original size:9 final size:10
Alignment explanation
Indices: 1286447--1286482 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
1286437 GGGAGAAAAA
1286447 AAAAGAGAAAG
1 AAAA-AGAAAG
1286458 AAAAAGAAAG
1 AAAAAGAAAG
*
1286468 AAAAAGAGAG
1 AAAAAGAAAG
1286478 AAAAA
1 AAAAA
1286483 TAAGAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 20 0.83
11 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:1287519 original size:141 final size:137
Alignment explanation
Indices: 1287175--1287663 Score: 542
Period size: 142 Copynumber: 3.5 Consensus size: 137
1287165 GTATCTGTAA
* * * * *
1287175 GGGTATAAAAGTCTTCAAAACTTTTCCTATCTTTTAGGTTTTACATTAAGGTATGAAATGAATTT
1 GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
* *
1287240 TCTT---A--AAAATTAAATACAAATTTTTATCTTAATTTTTCAAGATTTCTAATATTCACATGG
66 TCTTAAAATTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCACAT--
*
1287300 ATTTCCATAG
129 -TTTCCGTAG
* * * * * *
1287310 GGGTATAGAAATCTTCAACATTTTTTGTATCATTTT-AGTTCTCCATTAAGGTATGAATTGAATT
1 GGGTATAAAAATCTTCAAAACTTTTCGTATC-TTTTCGGTTCTCCATTAAGGTATGAAATGAATT
*
1287374 TTCTTAAAATTTTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAAAATTCTTA
65 TTCTTAAAA--TTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTC--A
*
1287439 CAATTTTTCGTA-
126 C-ATTTTCCGTAG
* * **
1287451 GGGTAGAAAAATCTTCAAAACTTTTCGTATCTTTTCTGTTCTCCATTAAGGTACAAAATGAATTT
1 GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
* * *
1287516 TCTTAAAAGTTCAAAAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCAT
66 TCTTAAAA-TT-AAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCACAT
1287581 GGTTCTCCGTAG
129 --TT-TCCGTAG
* ** * * *
1287593 GGGTACAAAAATCTTCAAAACTTTTTATATCTTTTCGGTTCTCCATTACGATATGAAATGAATTA
1 GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
1287658 TCTTAA
66 TCTTAA
1287664 TTTTTCAAGA
Statistics
Matches: 298, Mismatches: 39, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
135 54 0.18
136 4 0.01
138 3 0.01
139 1 0.00
140 8 0.03
141 110 0.37
142 114 0.38
144 2 0.01
145 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (137 bp):
GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
TCTTAAAATTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCACATTT
TCCGTAG
Found at i:1287671 original size:142 final size:140
Alignment explanation
Indices: 1287175--1287668 Score: 558
Period size: 141 Copynumber: 3.5 Consensus size: 140
1287165 GTATCTGTAA
* * * * *
1287175 GGGTATAAAAGTCTTCAAAACTTTTCCTATCTTTTAGGTTTTACATTAAGGTATGAAATGAATTT
1 GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
* *
1287240 TCTT--A----AAAATTAAATACAAATTTTTATCTTAATTTTTCAAGATTTCTAATATTCACATG
66 TCTTAAATTTTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCACATG
*
1287299 GATTTCCATAG
131 G-TTTCCGTAG
* * * * * *
1287310 GGGTATAGAAATCTTCAACATTTTTTGTATCATTTT-AGTTCTCCATTAAGGTATGAATTGAATT
1 GGGTATAAAAATCTTCAAAACTTTTCGTATC-TTTTCGGTTCTCCATTAAGGTATGAAATGAATT
*
1287374 TTCTTAAAATTTTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAAAATTCTTA
65 TTCTT-AAATTTTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTC--A
*
1287439 CAAT--TTTTCGTA-
127 C-ATGGTTTCCGTAG
* * **
1287451 GGGTAGAAAAATCTTCAAAACTTTTCGTATCTTTTCTGTTCTCCATTAAGGTACAAAATGAATTT
1 GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
* * * * *
1287516 TCTTAAAAGTTCAAAAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCAT
66 TCTT-AAATTTTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCACAT
1287581 GGTTCTCCGTAG
130 GGTT-TCCGTAG
* ** * * *
1287593 GGGTACAAAAATCTTCAAAACTTTTTATATCTTTTCGGTTCTCCATTACGATATGAAATGAATTA
1 GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
*
1287658 TCTTAATTTTT
66 TCTTAAATTTT
1287669 CAAGATTTCT
Statistics
Matches: 300, Mismatches: 43, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
135 54 0.18
136 4 0.01
138 3 0.01
139 1 0.00
140 6 0.02
141 116 0.39
142 112 0.37
144 2 0.01
145 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (140 bp):
GGGTATAAAAATCTTCAAAACTTTTCGTATCTTTTCGGTTCTCCATTAAGGTATGAAATGAATTT
TCTTAAATTTTAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCACATG
GTTTCCGTAG
Found at i:1287736 original size:109 final size:109
Alignment explanation
Indices: 1287545--1287772 Score: 323
Period size: 109 Copynumber: 2.1 Consensus size: 109
1287535 AATAAAAATT
* * *
1287545 ATTATATTAATTTTTCAAGATTTCTAATATTCCCATGGTTCTCCGTAGGGGTACAAAAATCTTCA
1 ATTATCTTAATTTTTCAAGATTTCTAATATTACCATGGTTATCCGTAGGGGTACAAAAATCTTCA
*
1287610 AAACTTTTTATATCTTTTCGGTTCTCCATTACGATAT-GAAATGA
66 AAACTTTTTATATCTTTTCGGTTCTCCATTAAGAT-TCGAAATGA
* * * * *
1287654 ATTATCTTAATTTTTCAAGATTTCTAATATTACTATGGTTATCTGTAGGGGTATAGAAATTTTCA
1 ATTATCTTAATTTTTCAAGATTTCTAATATTACCATGGTTATCCGTAGGGGTACAAAAATCTTCA
* * *
1287719 AAACTTTTTGTATCTTTTTGGTTCTCCATTAAGGTTCGAAATGA
66 AAACTTTTTATATCTTTTCGGTTCTCCATTAAGATTCGAAATGA
*
1287763 ATTTTCTTAA
1 ATTATCTTAA
1287773 ATTAAAAATT
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
108 1 0.01
109 104 0.99
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (109 bp):
ATTATCTTAATTTTTCAAGATTTCTAATATTACCATGGTTATCCGTAGGGGTACAAAAATCTTCA
AAACTTTTTATATCTTTTCGGTTCTCCATTAAGATTCGAAATGA
Found at i:1287843 original size:249 final size:249
Alignment explanation
Indices: 1287404--1287912 Score: 695
Period size: 249 Copynumber: 2.0 Consensus size: 249
1287394 AATAAAAATT
* *
1287404 ATTATCTTAATTTTTCAAGATTTCTAAAATTCTTACAATTTTTCGTAGGGTAGAAAAATCTTCAA
1 ATTATCTTAATTTTTCAAGATTTCT-AAATTATTACAATTTATCGTAGGGTAGAAAAATCTTCAA
*
1287469 AACTTTTCGTATCTTTTCTGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAAGTTCAAAAGT
65 AACTTTTCGTATCTTTTCTGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAAGTTAAAAAGT
* * *
1287534 AAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCATGGTTCTCCGTAGGGGTAC
130 AAATAAAAATTATTATATTAATTTTTCAAGATTTCTAAAATTCCCATGGCTCTCCGTAGGGGCAC
* * * **
1287599 AAAAATCTTCAAAACTTTTTATATCTTTTCGGTTCTCCATTACGATATGAAATGA
195 AAAAATCTTCAAAACTTTTCATATCTCTTCGGTTCTCCATTAAGATACAAAATGA
* * * *
1287654 ATTATCTTAATTTTTCAAGATTTCT-AA-TATTACTATGGTTATCTGTAGGGGTATAGAAATTTT
1 ATTATCTTAATTTTTCAAGATTTCTAAATTATTACAAT--TTATC-GTA-GGGTAGAAAAATCTT
* * *
1287717 CAAAACTTTTTGTATCTTTT-TGGTTCTCCATTAAGGTTCGAAATGAATTTTCTT-AAA-TTAAA
62 CAAAACTTTTCGTATCTTTTCT-GTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAAGTTAAA
* * * *
1287779 AATTAAATAAAAATTATTGTCTTAATTTTTCAAGATTTCTAAAATTCCCATGGCTCTTCGTAGGG
126 AAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAAAATTCCCATGGCTCTCCGTAGGG
* * *
1287844 GCATAAAAATCTTCAAAACTTTTCGTATCTCTTCGGTTCTCCATTAAGGTACAAAATGA
191 GCACAAAAATCTTCAAAACTTTTCATATCTCTTCGGTTCTCCATTAAGATACAAAATGA
*
1287903 ATTTTCTTAA
1 ATTATCTTAA
1287913 AAATAAAAAA
Statistics
Matches: 228, Mismatches: 26, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
247 7 0.03
248 2 0.01
249 126 0.55
250 32 0.14
251 61 0.27
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (249 bp):
ATTATCTTAATTTTTCAAGATTTCTAAATTATTACAATTTATCGTAGGGTAGAAAAATCTTCAAA
ACTTTTCGTATCTTTTCTGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAAGTTAAAAAGTA
AATAAAAATTATTATATTAATTTTTCAAGATTTCTAAAATTCCCATGGCTCTCCGTAGGGGCACA
AAAATCTTCAAAACTTTTCATATCTCTTCGGTTCTCCATTAAGATACAAAATGA
Found at i:1287882 original size:140 final size:140
Alignment explanation
Indices: 1287658--1288189 Score: 673
Period size: 140 Copynumber: 3.8 Consensus size: 140
1287648 AAATGAATTA
* * *
1287658 TCTTAATTTTTCAAGATTTCTAATATTACTATGGT-TATCTGTAGGGGTATAGAAATTTTCAAAA
1 TCTTAATTTTTCAAGATTTCTAATATTCCTATGGTCT-TC-GTAGGGGCATAGAAATCTTCAAAA
** * * *
1287722 CTTTTTGTATCTTTTTGGTTCTCCATTAAGGTTCGAAATGAATTTTCTT-AAATTAAAAATTAAA
64 CTTTTCATATCTTTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAATTAAAAATTAAA
1287786 TAAAAATTATTG
129 TAAAAATTATTG
* * *
1287798 TCTTAATTTTTCAAGATTTCTAAAATTCCCATGGCTCTTCGTAGGGGCATAAAAATCTTCAAAAC
1 TCTTAATTTTTCAAGATTTCTAATATTCCTATGG-TCTTCGTAGGGGCATAGAAATCTTCAAAAC
* * *
1287863 TTTTCGTATCTCTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAAATAAAAAATTAAA
65 TTTTCATATCTTTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTT-AAAATTAAAAATTAAA
*
1287928 TAAAAATTATTA
129 TAAAAATTATTG
** *
1287940 TCTTAATTTTTCAAGATTTCTAATATTCCTATAATTCTTCGTA-GGGCATAGAAATCTTGAAAAA
1 TCTTAATTTTTCAAGATTTCTAATATTCCTAT-GGTCTTCGTAGGGGCATAGAAATCTT-CAAAA
* * *
1288004 CTTTACATATCTTTTCGGTTTTCTATTAAGGTACAAAATGAATTTT-TTAGAAATTAAAAATTAA
64 CTTTTCATATCTTTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTTA-AAATTAAAAATTAA
*
1288068 ATAAAAAATATTG
128 ATAAAAATTATTG
* * * *
1288081 TCTTAATTTTTCAAGATTTCT-ATATTCCTAAGGTCTTTCGT-GGGGTATAGAAATCCTCGAAAC
1 TCTTAATTTTTCAAGATTTCTAATATTCCTATGGTC-TTCGTAGGGGCATAGAAATCTTCAAAAC
* * *
1288144 TTTTCATATCTTTT-GGTTTTACATTAAGGTACGAAATGAGATTTTC
65 TTTTCATATCTTTTCGGTTCTCCATTAAGGTACAAAATGA-ATTTTC
1288190 AAAATTTATA
Statistics
Matches: 343, Mismatches: 38, Indels: 22
0.85 0.09 0.05
Matches are distributed among these distances:
138 22 0.06
139 24 0.07
140 124 0.36
141 64 0.19
142 109 0.32
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (140 bp):
TCTTAATTTTTCAAGATTTCTAATATTCCTATGGTCTTCGTAGGGGCATAGAAATCTTCAAAACT
TTTCATATCTTTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAAATTAAAAATTAAATA
AAAATTATTG
Found at i:1287985 original size:391 final size:392
Alignment explanation
Indices: 1287263--1288023 Score: 1111
Period size: 391 Copynumber: 1.9 Consensus size: 392
1287253 ATACAAATTT
1287263 TTATCTTAATTTTTCAAGATTTCTAATATTCACATGGATTTCCATAGGGGTATAGAAATCTTCAA
1 TTATCTTAATTTTTCAAGATTTCTAATATTCACATGGATTTCCATAGGGGTATAGAAATCTTCAA
* * * *
1287328 CATTTTTTGTATCATTTTAGTTCTCCATTAAGGTATGAATTGAATTTTCTTAAAATTTTAAAATT
66 AACTTTTTGTATCATTTTAGTTCTCCATTAAGGTATGAAATGAATTTTCTTAAAATTTAAAAATT
** * * *
1287393 AAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAAAATTCTTACAATTTTTCGTAGGGTAGA
131 AAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAAAATTCCCACAACTCTTCGTAGGGCAGA
* *
1287458 AAAATCTTCAAAACTTTTCGTATCTTTTCTGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAA
196 AAAATCTTCAAAACTTTTCGTATCTCTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAA
* ** **
1287523 AGTTCAAAAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCATGGTTCTC
261 AATAAAAAAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCATAATTCTC
* * **
1287588 CGTAGGGGTACAAAAATCTT-CAAAACTTTTTATATCTTTTCGGTTCTCCATTACGATATGAAAT
326 CGTA-GGGCACAAAAATCTTGAAAAACTTTACATATCTTTTCGGTTCTCCATTACGATATGAAAT
1287652 GAA
390 GAA
** *
1287655 TTATCTTAATTTTTCAAGATTTCTAATATT-ACTATGG-TTATCTGTAGGGGTATAGAAATTTTC
1 TTATCTTAATTTTTCAAGATTTCTAATATTCAC-ATGGATT-TCCATAGGGGTATAGAAATCTTC
* *
1287718 AAAACTTTTTGTATCTTTTTGGTTCTCCATTAAGGT-TCGAAATGAATTTTCTT-AAA-TTAAAA
64 AAAACTTTTTGTATCATTTTAGTTCTCCATTAAGGTAT-GAAATGAATTTTCTTAAAATTTAAAA
* ***
1287780 ATTAAATAAAAATTATTGTCTTAATTTTTCAAGATTTCTAAAATTCCCATGGCTCTTCGTAGGGG
128 ATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAAAATTCCCACAACTCTTCGTA-GGG
*
1287845 CATAAAAATCTTCAAAACTTTTCGTATCTCTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCT
192 CAGAAAAATCTTCAAAACTTTTCGTATCTCTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCT
* * *
1287910 TAAAAATAAAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATAAT
257 TAAAAATAAAAAAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCATAAT
* * *
1287975 TCTTCGTAGGGCATAGAAATCTTGAAAAACTTTACATATCTTTTCGGTT
322 TCTCCGTAGGGCACAAAAATCTTGAAAAACTTTACATATCTTTTCGGTT
1288024 TTCTATTAAG
Statistics
Matches: 328, Mismatches: 36, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
390 70 0.21
391 158 0.48
392 100 0.30
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (392 bp):
TTATCTTAATTTTTCAAGATTTCTAATATTCACATGGATTTCCATAGGGGTATAGAAATCTTCAA
AACTTTTTGTATCATTTTAGTTCTCCATTAAGGTATGAAATGAATTTTCTTAAAATTTAAAAATT
AAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAAAATTCCCACAACTCTTCGTAGGGCAGA
AAAATCTTCAAAACTTTTCGTATCTCTTCGGTTCTCCATTAAGGTACAAAATGAATTTTCTTAAA
AATAAAAAAGTAAATAAAAATTATTATATTAATTTTTCAAGATTTCTAATATTCCCATAATTCTC
CGTAGGGCACAAAAATCTTGAAAAACTTTACATATCTTTTCGGTTCTCCATTACGATATGAAATG
AA
Found at i:1288543 original size:155 final size:155
Alignment explanation
Indices: 1288278--1288872 Score: 559
Period size: 155 Copynumber: 3.9 Consensus size: 155
1288268 TCTTTCATTT
* * * * * * * *
1288278 TTTTTGAGCCCTTTAGAGGTATTGGGCACTTCTAAGTCGAAGGTATCCCCT-GGAGGTATTTTCA
1 TTTTTAAGTCCTTTAGAGGTATCGAGCACTTCTAAGTCGAAGATATCCCTTAAG-GGCATTTTCA
* ** * * * * * * * * *
1288342 TAGTTTTCCA-AAATCAAATCCTAGGTTATCACCTGGTTTGCTTTTATGCCGAAGGTGGGTAATT
65 TAATTTTTTAGAACT-GAGTCTTAGGTTATCACCAGGTCTACTTTTATGCCGAAAGTGGGTATTT
* *
1288406 GGGATAGGTCCATCCCATCGATAATCC
129 AGGATAGGTCCATCCCATCTATAATCC
* * * * * **
1288433 TTTTTAAGTCCTTTAGGGGTATCGAGCAGTTCTAAGTTGAAGGTATCCCTTATGGGCATTTTTGT
1 TTTTTAAGTCCTTTAGAGGTATCGAGCACTTCTAAGTCGAAGATATCCCTTAAGGGCATTTTCAT
* *
1288498 AATTTTTTAGAACTGAGTCTTAGGTTATCACCAGGTCTACGTTTATGCCGAATGTGGGTATTTAG
66 AATTTTTTAGAACTGAGTCTTAGGTTATCACCAGGTCTACTTTTATGCCGAAAGTGGGTATTTAG
* *
1288563 GATAAGTTCATCCCATCTATAATCC
131 GATAGGTCCATCCCATCTATAATCC
* *
1288588 TTTTTAAGTCCTTTAAAGGTATCGGGCACTTCTAAGTCGAAGATATCCCTTAAGGGCATTTTCAT
1 TTTTTAAGTCCTTTAGAGGTATCGAGCACTTCTAAGTCGAAGATATCCCTTAAGGGCATTTTCAT
* * * * *
1288653 AATTTTTTAGAACTGAGTCTTAAGTTGTCACTAGGTCCA-TTTTATGCCGAAAGTGGATATTTAG
66 AATTTTTTAGAACTGAGTCTTAGGTTATCACCAGGTCTACTTTTATGCCGAAAGTGGGTATTTAG
1288717 GATAGG-CTCATCCCATCTATAATCC
131 GATAGGTC-CATCCCATCTATAATCC
* ** * *
1288742 CTTTTAAGTCCTTTAGA-G----G-GCACTTCTACA-TTTAAGGTA-CCCTCAAAGGGCATTTTC
1 TTTTTAAGTCCTTTAGAGGTATCGAGCACTTCTA-AGTCGAAGATATCCCT-TAAGGGCATTTTC
* * * * * * * * *
1288799 ATTATTTTTCAGAACTAACTCCTAGGTTGTCATCGGGTCTGCTTTTATGCC-AAATGTGGGTATT
64 ATAATTTTTTAGAACTGAGTCTTAGGTTATCACCAGGTCTACTTTTATGCCGAAA-GTGGGTATT
1288863 TAGGATAGGT
128 TAGGATAGGT
1288873 TAATCCCGCC
Statistics
Matches: 367, Mismatches: 65, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
147 4 0.01
148 60 0.16
149 28 0.08
153 1 0.00
154 59 0.16
155 211 0.57
156 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (155 bp):
TTTTTAAGTCCTTTAGAGGTATCGAGCACTTCTAAGTCGAAGATATCCCTTAAGGGCATTTTCAT
AATTTTTTAGAACTGAGTCTTAGGTTATCACCAGGTCTACTTTTATGCCGAAAGTGGGTATTTAG
GATAGGTCCATCCCATCTATAATCC
Found at i:1288924 original size:303 final size:306
Alignment explanation
Indices: 1288383--1288962 Score: 665
Period size: 303 Copynumber: 1.9 Consensus size: 306
1288373 CCTGGTTTGC
* * * *
1288383 TTTTATGCCGAAGGTGGGTAATTGGGATAGGTCCATCCCATCGATAATCCTTTTTAAGTCCTTTA
1 TTTTATGCCGAAAGTGGATAATTAGGATAGGTCCATCCCATCGATAATCCCTTTTAAGTCCTTTA
* * ** * *
1288448 GGGGTATCGAGCAGTTCTAAGTTGAAGGTATCCCTTATGGGCATTTTTGTAATTTTTTAGAACTG
66 GGGG--TCGAGCA-TTCTAAGTTGAAGGTATCCCTAAAGGGCATTTTCATAATTTTTCAGAACTA
* * * *
1288513 AGTCTTAGGTTATCACCAGGTCTACGTTTATGCCGAATGTGGGTATTTAGGATAAGTTCATCCCA
128 ACTCCTAGGTTATCACCAGGTCTACGTTTATGCCAAATGTGGGTATTTAGGATAAGTTAATCCCA
* * * * * *
1288578 TCTATAATCCTTTTTAAGTCCTTTAAAGGTATCGGGCACTTCTA-AGTCGAAGATATCCCTTAAG
193 CCTATAATCCTTTTTAAGTCCTTTAAAGGTACCAGACACTTCTACA-TCAAAAATATCCCTTAAG
1288642 GGCATTTTCATAATTTTTTAGAACTGAGTCTTAAGTTGTCACTAGGTCCA
257 GGCATTTTCATAATTTTTTAGAACTGAGTCTTAAGTTGTCACTAGGTCCA
* *
1288692 TTTTATGCCGAAAGTGGATATTTAGGATAGG-CTCATCCCATCTATAATCCCTTTTAAGTCCTTT
1 TTTTATGCCGAAAGTGGATAATTAGGATAGGTC-CATCCCATCGATAATCCCTTTTAAGTCCTTT
* *
1288756 AGAGGG-C-A-C-TTCTACA-TTTAAGGTA-CCCTCAAAGGGCATTTTCATTATTTTTCAGAACT
65 AG-GGGTCGAGCATTCTA-AGTTGAAGGTATCCCT-AAAGGGCATTTTCATAATTTTTCAGAACT
* * * * * *
1288815 AACTCCTAGGTTGTCATCGGGTCTGCTTTTATGCCAAATGTGGGTATTTAGGATAGGTTAATCCC
127 AACTCCTAGGTTATCACCAGGTCTACGTTTATGCCAAATGTGGGTATTTAGGATAAGTTAATCCC
* * * * * * *
1288880 GCCTATACTTCTTTTTAGGTCC-TTAAAGGGTACCATATACTTCTACATCAAAAATATCCCTTAG
192 ACCTATAATCCTTTTTAAGTCCTTTAAA-GGTACCAGACACTTCTACATCAAAAATATCCCTTAA
**
1288944 GGGCATTTTTTTAATTTTT
256 GGGCATTTTCATAATTTTT
1288963 CTAAGATTGA
Statistics
Matches: 226, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
302 9 0.04
303 150 0.66
304 2 0.01
305 1 0.00
306 1 0.00
307 1 0.00
308 1 0.00
309 58 0.26
310 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (306 bp):
TTTTATGCCGAAAGTGGATAATTAGGATAGGTCCATCCCATCGATAATCCCTTTTAAGTCCTTTA
GGGGTCGAGCATTCTAAGTTGAAGGTATCCCTAAAGGGCATTTTCATAATTTTTCAGAACTAACT
CCTAGGTTATCACCAGGTCTACGTTTATGCCAAATGTGGGTATTTAGGATAAGTTAATCCCACCT
ATAATCCTTTTTAAGTCCTTTAAAGGTACCAGACACTTCTACATCAAAAATATCCCTTAAGGGCA
TTTTCATAATTTTTTAGAACTGAGTCTTAAGTTGTCACTAGGTCCA
Found at i:1297692 original size:13 final size:13
Alignment explanation
Indices: 1297674--1297730 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1297664 CATAAAGTGT
1297674 TGTATCGATACAA
1 TGTATCGATACAA
1297687 TGTATCGATACATAA
1 TGTATCGATAC--AA
1297702 GTGTTTTATCGATACAA
1 -TG---TATCGATACAA
1297719 TGTATCGATACA
1 TGTATCGATACA
1297731 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
15 2 0.05
16 4 0.11
17 2 0.05
19 9 0.24
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1297712 original size:32 final size:32
Alignment explanation
Indices: 1297654--1297754 Score: 159
Period size: 32 Copynumber: 3.1 Consensus size: 32
1297644 TTCAATGATT
* *
1297654 TGTATCCATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTTTATCGATACAA
1297687 TGTATCGATACATAAGTGTTTTATCGATACAA
1 TGTATCGATACATAAGTGTTTTATCGATACAA
1297719 TGTATCGATACATAAGT-TTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTT-TATCGATACAA
1297751 TGTA
1 TGTA
1297755 AGCTACTGCC
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
31 3 0.05
32 50 0.77
33 12 0.18
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTTTATCGATACAA
Found at i:1297713 original size:19 final size:19
Alignment explanation
Indices: 1297689--1297749 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
1297679 CGATACAATG
1297689 TATCGATACATAAGTGTTT
1 TATCGATACATAAGTGTTT
1297708 TATCGATAC--AA-TG---
1 TATCGATACATAAGTGTTT
1297721 TATCGATACATAAGT-TTT
1 TATCGATACATAAGTGTTT
1297739 GTATCGATACA
1 -TATCGATACA
1297750 ATGTAAGCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
13 9 0.26
15 2 0.06
16 3 0.09
17 2 0.06
19 19 0.54
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (19 bp):
TATCGATACATAAGTGTTT
Found at i:1297869 original size:52 final size:52
Alignment explanation
Indices: 1297825--1298005 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
1297815 CACTGATCTT
* *
1297825 TGTATCGATACATGCAGGCAAGTTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1297877 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1297929 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
1297981 TGTATCGATACATACAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1298006 TCATATTTCG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:1302344 original size:13 final size:13
Alignment explanation
Indices: 1302326--1302351 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1302316 ACATAAGTGT
1302326 TGTATCGATACAA
1 TGTATCGATACAA
1302339 TGTATCGATACAA
1 TGTATCGATACAA
1302352 AGCTACCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1302401 original size:20 final size:20
Alignment explanation
Indices: 1302376--1302430 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
1302366 CTGCCAAGGA
1302376 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
*
1302396 AATGTATCGATACATTGTTC
1 AATGTATCGATACATTATTC
*
1302416 AATGTATGGATACAT
1 AATGTATCGATACAT
1302431 GCAATCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:1309193 original size:159 final size:159
Alignment explanation
Indices: 1308909--1309232 Score: 334
Period size: 161 Copynumber: 2.0 Consensus size: 159
1308899 GATTTTGGTA
* * *
1308909 AAAAATAGGGTTGGAGTATTCCCTCAGAGAAGGTGTGGTTGGAGTACCCCAAAGATATTAAAATT
1 AAAAATAGGGTTAGAGTATCCCCTCAGAGAAGGTGGGGTTGGAGTACCCCAAAGATA-TAAAATT
* * * * * *
1308974 CGGTGTTATAGAAGTAAAAACAGAGTTGGAGTATCTCTTAGGAAATGGCGAGGTTGGAGTATCCC
65 CAGTGTTATAGAAGTAAAAACAGAGTTGGAGTATCCCTCAGAAAATGGCGAGGTTAGAGTAACCC
* * *
1309039 CGGAGATGAAAAAAATT-GATATTTGGGAAAT
130 AGAAGAT--AAAAAATTCAATATTTGGGAAAT
* * * * * *
1309070 AAAAATAGGGTTAGAGTGTCCCCTTAGATATGGTGGGGTTGGAGTACCCCTAAGATGA-AAATTT
1 AAAAATAGGGTTAGAGTATCCCCTCAGAGAAGGTGGGGTTGGAGTACCCCAAAGAT-ATAAAATT
* * * * *
1309134 TAGTGTTTTAGAAGTAAAAA-TGGGTTGGAGTATCCCCTCA-AAAATGGTG-GGCTTAGAGTAAC
65 CAGTGTTATAGAAGTAAAAACAGAGTTGGAGTAT-CCCTCAGAAAATGGCGAGG-TTAGAGTAAC
* *
1309196 CCATAAGATAAAAAATTCAATGTTTGGGAAAT
128 CCAGAAGATAAAAAATTCAATATTTGGGAAAT
1309228 AAAAA
1 AAAAA
1309233 CGAGGTTGGA
Statistics
Matches: 134, Mismatches: 25, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
157 8 0.06
158 19 0.14
159 32 0.24
160 26 0.19
161 48 0.36
162 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (159 bp):
AAAAATAGGGTTAGAGTATCCCCTCAGAGAAGGTGGGGTTGGAGTACCCCAAAGATATAAAATTC
AGTGTTATAGAAGTAAAAACAGAGTTGGAGTATCCCTCAGAAAATGGCGAGGTTAGAGTAACCCA
GAAGATAAAAAATTCAATATTTGGGAAAT
Found at i:1309232 original size:79 final size:77
Alignment explanation
Indices: 1309060--1309334 Score: 266
Period size: 78 Copynumber: 3.5 Consensus size: 77
1309050 AAAATTGATA
* * * * * *
1309060 TTTGGGAAATAAAAATAGGGTTAGAGTGTCCCCTTAGATATGGTGGGGTTGGAGTACCCCTAAGA
1 TTTGGGAAATAAAAAT-GGGTTGGAGTATCCCCTCAAAAATGGTGGGCTTGGAGTA-CCCTAAGA
*
1309125 TGAAAATTTTAGTG
64 TGAAAAATTTAGTG
** * *
1309139 TTTTAGAAGTAAAAATGGGTTGGAGTATCCCCTCAAAAATGGTGGGCTTAGAGTAACCCATAAGA
1 TTTGGGAAATAAAAATGGGTTGGAGTATCCCCTCAAAAATGGTGGGCTTGGAGT-ACCC-TAAGA
* * *
1309204 TAAAAAATTCAATG
64 TGAAAAATTTAGTG
* * * * * *
1309218 TTTGGGAAATAAAAACGAGGTTGGAGCATCCCCTAAAAAATGAT-GGCATTGGAGTATCCTCGAG
1 TTTGGGAAATAAAAATG-GGTTGGAGTATCCCCTCAAAAATGGTGGGC-TTGGAGTACCCT-AAG
1309282 ATGAAAAATTTAGT-
63 ATGAAAAATTTAGTG
* *
1309296 TTTGGGGAATAAAAATGGGCTTGGAGTATCCCTTCAAAA
1 TTTGGGAAATAAAAATGGG-TTGGAGTATCCCCTCAAAA
1309335 TTGAAAAATT
Statistics
Matches: 158, Mismatches: 32, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
77 2 0.01
78 66 0.42
79 61 0.39
80 29 0.18
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (77 bp):
TTTGGGAAATAAAAATGGGTTGGAGTATCCCCTCAAAAATGGTGGGCTTGGAGTACCCTAAGATG
AAAAATTTAGTG
Found at i:1309249 original size:80 final size:78
Alignment explanation
Indices: 1309099--1309259 Score: 187
Period size: 79 Copynumber: 2.0 Consensus size: 78
1309089 CCCCTTAGAT
* * * * * * * * * *
1309099 ATGGTGGGGTTGGAGTACCCCTAAGATGAAAATTTTAGTGTTTTAGAAGTAAAAATGGGTTGGAG
1 ATGGTGGGCTTAGAGTACCCATAAGATAAAAAATTCAATGTTTGAGAAATAAAAACGGGTTGGAG
* *
1309164 TATCCCCTCAAAA
66 CATCCCCTAAAAA
*
1309177 ATGGTGGGCTTAGAGTAACCCATAAGATAAAAAATTCAATGTTTGGGAAATAAAAACGAGGTTGG
1 ATGGTGGGCTTAGAGT-ACCCATAAGATAAAAAATTCAATGTTTGAGAAATAAAAACG-GGTTGG
1309242 AGCATCCCCTAAAAA
64 AGCATCCCCTAAAAA
1309257 ATG
1 ATG
1309260 ATGGCATTGG
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.21
79 32 0.47
80 22 0.32
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (78 bp):
ATGGTGGGCTTAGAGTACCCATAAGATAAAAAATTCAATGTTTGAGAAATAAAAACGGGTTGGAG
CATCCCCTAAAAA
Found at i:1309363 original size:132 final size:133
Alignment explanation
Indices: 1309206--1309458 Score: 323
Period size: 132 Copynumber: 1.9 Consensus size: 133
1309196 CCATAAGATA
* * *
1309206 AAAAATTCAATGTTTGGGAAATAAAAACGAGGTTGGAGCATCCCCTAAAAAATGATGGCATTGGA
1 AAAAATTCAATGTTTAGGAAATAAAAACGAGGTTAGAGCATCCCCTAAAAAATGATGGCATTAGA
* * * * *
1309271 GTATCCTCGA-GATGAAAAATTTAGT-TTTGGGGAATAAAAATGG-GCTTGGAGTATCCCTTCAA
66 GTATCC-CCATGATGAAAAATTCAATGTTTAGGAAATAAAAATGGTG-TTGGAGTATCCCTTCAA
1309333 AATTG
129 AATTG
* * * * * * **
1309338 AAAAATTTAATGTTTAGGATATAAAAACGGGGTTAGAGTATCCCCTTAGAAATGATGGGGTTAGA
1 AAAAATTCAATGTTTAGGAAATAAAAACGAGGTTAGAGCATCCCCTAAAAAATGATGGCATTAGA
1309403 GTATCCCCATGATGAAAAATTCAATGTTTAGGAAATAAAAATGGTGTTGGAGTATC
66 GTATCCCCATGATGAAAAATTCAATGTTTAGGAAATAAAAATGGTGTTGGAGTATC
1309459 TTCGCGAAAA
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
131 2 0.02
132 73 0.72
133 26 0.25
134 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (133 bp):
AAAAATTCAATGTTTAGGAAATAAAAACGAGGTTAGAGCATCCCCTAAAAAATGATGGCATTAGA
GTATCCCCATGATGAAAAATTCAATGTTTAGGAAATAAAAATGGTGTTGGAGTATCCCTTCAAAA
TTG
Found at i:1309423 original size:79 final size:76
Alignment explanation
Indices: 1309336--1309540 Score: 234
Period size: 79 Copynumber: 2.6 Consensus size: 76
1309326 CCTTCAAAAT
* * * *
1309336 TGAAAAATTTAATGTTTAGGATATAAAAACGGGGTTAGAGTATCCCCTTAGAAATGATGGGGTT-
1 TGAAAAATTCAATGTTTAGGA-ATAAAAATGGGGTTGGAGTATCCCC-GA-AAATGATGGGGTTG
1309400 AGAGTATCCC-CATGA
63 A-AGTATCCCTCA-GA
* *
1309415 TGAAAAATTCAATGTTTAGGAAATAAAAATGGTGTTGGAGTATCTTCGCGAAAATGATGGGGTTG
1 TGAAAAATTCAATGTTTAGG-AATAAAAATGGGGTTGGAGTATC--CCCGAAAATGATGGGGTTG
*
1309480 AAGTATCCCTGAGA
63 AAGTATCCCTCAGA
* *
1309494 TGAAAAATTCAGTGTTTAGGAACTAAAAATTGGGTTGGAGTATCCCC
1 TGAAAAATTCAATGTTTAGGAA-TAAAAATGGGGTTGGAGTATCCCC
1309541 AAGGTGAGGT
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
77 2 0.02
78 2 0.02
79 99 0.91
80 4 0.04
81 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (76 bp):
TGAAAAATTCAATGTTTAGGAATAAAAATGGGGTTGGAGTATCCCCGAAAATGATGGGGTTGAAG
TATCCCTCAGA
Found at i:1309431 original size:211 final size:212
Alignment explanation
Indices: 1309155--1309539 Score: 494
Period size: 211 Copynumber: 1.8 Consensus size: 212
1309145 AAGTAAAAAT
* *
1309155 GGGTTGGAGTATCCCCTCAAAAATGGTGGGCTTAGAGTAACCCATAAGATAAAAAATTCAATGTT
1 GGGTTAGAGTATCCCCTCAAAAATGATGGGCTTAGAGTAACCCAT-AGATAAAAAATTCAATGTT
* * *
1309220 TGGGAAATAAAAACGAG-GTTGGAGCATCCCCTAAAAAATGATGGCATTGGAGTAT-CCTCGAGA
65 TAGGAAATAAAAACG-GTGTTGGAGCATCCCCGAAAAAATGATGGCATTGAAGTATCCCT-GAGA
* *
1309283 TGAAAAATTTAGT-TTTGGGGAA-TAAAAA-TGGGCTTGGAGTATCCCTTCAAAATTGAAAAATT
128 TGAAAAATTCAGTGTTT-AGGAACTAAAAATTGGG-TTGGAGTATCCCTTCAAAATTGAAAAATT
1309345 TAATGTTTAGGATATAAAAACG
191 TAATGTTTAGGATATAAAAACG
* * * * *
1309367 GGGTTAGAGTATCCCCTTAGAAATGATGGGGTTAGAGTATCCCCAT-GATGAAAAATTCAATGTT
1 GGGTTAGAGTATCCCCTCAAAAATGATGGGCTTAGAGTA-ACCCATAGATAAAAAATTCAATGTT
* * ** ** **
1309431 TAGGAAATAAAAATGGTGTTGGAGTATCTTCGCGAAAATGATGGGGTTGAAGTATCCCTGAGATG
65 TAGGAAATAAAAACGGTGTTGGAGCATCCCCGAAAAAATGATGGCATTGAAGTATCCCTGAGATG
1309496 AAAAATTCAGTGTTTAGGAACTAAAAATTGGGTTGGAGTATCCC
130 AAAAATTCAGTGTTTAGGAACTAAAAATTGGGTTGGAGTATCCC
1309540 CAAGGTGAGG
Statistics
Matches: 147, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
210 1 0.01
211 79 0.54
212 58 0.39
213 9 0.06
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.28
Consensus pattern (212 bp):
GGGTTAGAGTATCCCCTCAAAAATGATGGGCTTAGAGTAACCCATAGATAAAAAATTCAATGTTT
AGGAAATAAAAACGGTGTTGGAGCATCCCCGAAAAAATGATGGCATTGAAGTATCCCTGAGATGA
AAAATTCAGTGTTTAGGAACTAAAAATTGGGTTGGAGTATCCCTTCAAAATTGAAAAATTTAATG
TTTAGGATATAAAAACG
Found at i:1312116 original size:20 final size:20
Alignment explanation
Indices: 1312091--1312144 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
1312081 CATTACAAGC
1312091 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
* **
1312111 ATGTATCAATACATTTGCTT
1 ATGTATCGATACATTCACTT
*
1312131 ATTATATCGATACA
1 A-TGTATCGATACA
1312145 AATTGTAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:1312774 original size:71 final size:69
Alignment explanation
Indices: 1312628--1312786 Score: 205
Period size: 71 Copynumber: 2.3 Consensus size: 69
1312618 AAAAGAGTCT
* *
1312628 TGCTCTTTGAGGA-TAAAAGGGATAAAAAATGCCACCAACTTGTGTAGGCTTTAAAAGAAAAAGG
1 TGCTCTTTGAGGACTAAAAAGGATAAAAAATGCCACCAACTTATGTAGGCTTTAAAAGAAAAA-G
1312692 CATCA
65 CATCA
* * *
1312697 TGCTCTTTGAGGACTAAAAAGGATAAAAAAGGTGCCATCAATTTATGTGGGCTTTAAAAAGAAAA
1 TGCTCTTTGAGGACTAAAAAGGATAAAAAA--TGCCACCAACTTATGTAGGCTTT-AAAAGAAAA
* *
1312762 A-CGTCC
63 AGCATCA
1312768 TGCTCTTTGAGGACTAAAA
1 TGCTCTTTGAGGACTAAAA
1312787 GGAGTGCCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
69 13 0.16
70 15 0.19
71 22 0.28
72 19 0.24
73 10 0.13
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (69 bp):
TGCTCTTTGAGGACTAAAAAGGATAAAAAATGCCACCAACTTATGTAGGCTTTAAAAGAAAAAGC
ATCA
Found at i:1313064 original size:44 final size:43
Alignment explanation
Indices: 1313016--1313128 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 43
1313006 AACTTGTCTG
* *
1313016 GGCTTTGAAAAAGAAAAAAGAAAAGGGTACCGCTAACTTATGT
1 GGCTTTGAAAAAGAAAAAGGAAAAGGGTACCACTAACTTATGT
* * * * *
1313059 AGGCTTTGGAAAAGAAAAAGGAAAAAGGTGCCACTAGCTTGTGT
1 -GGCTTTGAAAAAGAAAAAGGAAAAGGGTACCACTAACTTATGT
* *
1313103 GGTCTTTGAAATAGGAAAAGGAAAAG
1 GG-CTTTGAAAAAGAAAAAGGAAAAG
1313129 CATTTTGCTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 2 0.04
44 55 0.96
ACGTcount: A:0.42, C:0.10, G:0.27, T:0.20
Consensus pattern (43 bp):
GGCTTTGAAAAAGAAAAAGGAAAAGGGTACCACTAACTTATGT
Found at i:1313227 original size:35 final size:35
Alignment explanation
Indices: 1313158--1313510 Score: 321
Period size: 35 Copynumber: 9.8 Consensus size: 35
1313148 TATAAAAGGT
* * * * *
1313158 AAAAGATGCCACTAGCTTATGTGGGCTTTGAAAAG
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
* *
1313193 AAAAGGGTGCCACCAACTTGTGTTGGCTTAAAAAGAG
1 AAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAA-AG
* * *
1313230 AAAAAAGTGTCACCAACTTGTATGGGCTTTAAAAAG
1 -AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
*
1313266 AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
*
1313301 AAAAGGGTGCCACCAACTTGTGTGGGCTTAAAAAGAG
1 AAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAA-AG
* *** * * *
1313338 AAAAAAAAGTGTTGCTAGCTTGT-TAGGCTTTAAAAAG
1 ---AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
* * *
1313375 AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAGAG
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
* * *
1313410 AAAAGGTACCACCAACTTGTGTGGACTTAAAAAGAG
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-AG
* * * * *
1313446 AAAAAAGTGTCGCCAGCTTGTGTGTGCTTTAAAAAG
1 -AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
* *
1313482 AAAAGGTGCCACCAATTTGTGTTGGCTTT
1 AAAAGGTGCCACCAACTTGTGTGGGCTTT
1313511 TGAAAAGGGC
Statistics
Matches: 252, Mismatches: 55, Indels: 22
0.77 0.17 0.07
Matches are distributed among these distances:
34 15 0.06
35 99 0.39
36 55 0.22
37 55 0.22
38 14 0.06
39 10 0.04
40 4 0.02
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.25
Consensus pattern (35 bp):
AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
Found at i:1313276 original size:108 final size:107
Alignment explanation
Indices: 1313158--1313517 Score: 508
Period size: 108 Copynumber: 3.3 Consensus size: 107
1313148 TATAAAAGGT
* * *
1313158 AAAAGATGCCACTAGCTTATGTGGGCTTTGAAAAGAAAAGGGTGCCACCAACTTGTGTTGGCTTA
1 AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGGTGCCACCAACTTGTGTTGGCTTA
* *
1313223 AAAAGAGAAAAAAGTGTCACCAACTTGTATGGGCTTTAAAAAG
66 AAAAGAGAAAAAAGTGTCGCCAGCTTGT-TGGGCTTTAAAAAG
* *
1313266 AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGGTGCCACCAACTTGTGTGGGCTTA
1 AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGGTGCCACCAACTTGTGTTGGCTTA
* * *
1313331 AAAAGAGAAAAAAAAGTGTTGCTAGCTTGTTAGGCTTTAAAAAG
66 AAAAGAG--AAAAAAGTGTCGCCAGCTTGTTGGGCTTTAAAAAG
* *
1313375 AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAGAGAAAA-GGTACCACCAACTTGTG-TGGACTT
1 AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGGTGCCACCAACTTGTGTTGG-CTT
*
1313438 AAAAAGAGAAAAAAGTGTCGCCAGCTTGTGTGTGCTTTAAAAAG
65 AAAAAGAGAAAAAAGTGTCGCCAGCTTGT-TGGGCTTTAAAAAG
** *
1313482 AAAAGGTGCCACCAATTTGTGTTGGCTTTTGAAAAG
1 AAAAGGTGCCACCAGCTTGTGTGGGC-TTTGAAAAG
1313518 GGCTACCAAT
Statistics
Matches: 225, Mismatches: 22, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
106 19 0.08
107 37 0.16
108 102 0.45
109 50 0.22
110 17 0.08
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (107 bp):
AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGGTGCCACCAACTTGTGTTGGCTTA
AAAAGAGAAAAAAGTGTCGCCAGCTTGTTGGGCTTTAAAAAG
Found at i:1313792 original size:60 final size:60
Alignment explanation
Indices: 1313697--1313925 Score: 172
Period size: 60 Copynumber: 3.6 Consensus size: 60
1313687 AAGTGCCTTG
** **
1313697 CTCTTTGAGGACTAAAATAAGGGAAGACATTAGCTTATGTGGCCATTAAAAAATGTCCTA
1 CTCTTTGAGGACTAAAATAAGGGGTGACACCAGCTTATGTGGCCATTAAAAAATGTCCTA
* * *
1313757 CTCTTTGAGGACTAAAATAAGGGGTGCCACCAGCTTGTGTAGG-CTTTGGAAAAGAAAAAAGAGA
1 CTCTTTGAGGACTAAAATAAGGGGTGACACCAGCTTATGT-GGCCATT---------AAAA-A-A
* * *
1313821 AGCATCTTG
54 TG--TCCTA
** *
1313830 CTCTTTGAGGACTAAAATAAGGGGTGACATTAGCTTCTGTGGCCATTAAAAAATGTCCTA
1 CTCTTTGAGGACTAAAATAAGGGGTGACACCAGCTTATGTGGCCATTAAAAAATGTCCTA
* ** *
1313890 CTCTTTAAGGTTTAAAATAAGGGGTGCCACCAGCTT
1 CTCTTTGAGGACTAAAATAAGGGGTGACACCAGCTT
1313926 GTTTGGGCTT
Statistics
Matches: 130, Mismatches: 24, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
60 70 0.54
61 2 0.02
62 2 0.02
63 1 0.01
64 4 0.03
69 4 0.03
70 1 0.01
71 2 0.02
72 2 0.02
73 42 0.32
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (60 bp):
CTCTTTGAGGACTAAAATAAGGGGTGACACCAGCTTATGTGGCCATTAAAAAATGTCCTA
Found at i:1313792 original size:132 final size:132
Alignment explanation
Indices: 1313620--1313985 Score: 491
Period size: 133 Copynumber: 2.8 Consensus size: 132
1313610 GAAAAAGGCA
* ** * * *
1313620 TCCTACTTTTTGAAAACTAAAATAAGAGGTGCCACTAGCTTGTGTGGGTTTGGAATAGAAAAAAG
1 TCCTACTCTTTGAGGACTAAAATAAGGGGTGCCACCAGCTTGTGTGGGTTTGGAAAAGAAAAAAG
1313685 AGAAGTGCCTTGCTCTTTGAGGACTAAAATAAGGGAAGACATTAGCTTATGTGGCCATTAAAAAA
66 AGAAGTGCCTTGCTCTTTGAGGACTAAAATAAGGGAAGACATTAGCTTATGTGGCCATTAAAAAA
1313750 TG
131 TG
*
1313752 TCCTACTCTTTGAGGACTAAAATAAGGGGTGCCACCAGCTTGTGTAGGCTTTGGAAAAGAAAAAA
1 TCCTACTCTTTGAGGACTAAAATAAGGGGTGCCACCAGCTTGTGT-GGGTTTGGAAAAGAAAAAA
*** ** *
1313817 GAGAAGCATCTTGCTCTTTGAGGACTAAAATAAGGGGTGACATTAGCTTCTGTGGCCATTAAAAA
65 GAGAAGTGCCTTGCTCTTTGAGGACTAAAATAAGGGAAGACATTAGCTTATGTGGCCATTAAAAA
1313882 ATG
130 ATG
* ** * *
1313885 TCCTACTCTTTAAGGTTTAAAATAAGGGGTGCCACCAGCTTGTTTGGGCTTTAGAAAAGAAAAAA
1 TCCTACTCTTTGAGGACTAAAATAAGGGGTGCCACCAGCTTGTGTGGG-TTTGGAAAAGAAAAAA
** * * *
1313950 GAGGTGTGCCCTT-CTTTTTAAGGACTAAAAGAAGGG
65 GAGAAGTG-CCTTGCTCTTTGAGGACTAAAATAAGGG
1313986 GTTTAAGTTT
Statistics
Matches: 204, Mismatches: 27, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
132 42 0.21
133 159 0.78
134 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (132 bp):
TCCTACTCTTTGAGGACTAAAATAAGGGGTGCCACCAGCTTGTGTGGGTTTGGAAAAGAAAAAAG
AGAAGTGCCTTGCTCTTTGAGGACTAAAATAAGGGAAGACATTAGCTTATGTGGCCATTAAAAAA
TG
Found at i:1314922 original size:11 final size:11
Alignment explanation
Indices: 1314906--1314954 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
1314896 TTCTCCACTT
*
1314906 TTTTTTTGTTC
1 TTTTTTTGTTA
1314917 TTTTTTTGTTA
1 TTTTTTTGTTA
*
1314928 TCTTTTTGTT-
1 TTTTTTTGTTA
1314938 TTTTTTT-TTA
1 TTTTTTTGTTA
1314948 TTTTTTT
1 TTTTTTT
1314955 TTAAGTTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
9 2 0.06
10 13 0.38
11 19 0.56
ACGTcount: A:0.04, C:0.04, G:0.06, T:0.86
Consensus pattern (11 bp):
TTTTTTTGTTA
Found at i:1314942 original size:20 final size:19
Alignment explanation
Indices: 1314907--1314953 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
1314897 TCTCCACTTT
1314907 TTTTTTGTTCTTTTTTTGTTA
1 TTTTTTG-T-TTTTTTTGTTA
*
1314928 TCTTTTTGTTTTTTTTTTTA
1 T-TTTTTGTTTTTTTTGTTA
1314948 TTTTTT
1 TTTTTT
1314954 TTTAAGTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.21
20 11 0.46
21 2 0.08
22 6 0.25
ACGTcount: A:0.04, C:0.04, G:0.06, T:0.85
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTGTTA
Found at i:1325368 original size:21 final size:21
Alignment explanation
Indices: 1325321--1325371 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
1325311 CAAGGTGGTT
* * *
1325321 TTGTATCGATACGTTCATTTA
1 TTGTATCGATACATTCACTAA
1325342 -TGTATCGATACATTCACTAA
1 TTGTATCGATACATTCACTAA
1325362 TTGTATCGAT
1 TTGTATCGAT
1325372 GCAAATCGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (21 bp):
TTGTATCGATACATTCACTAA
Found at i:1326141 original size:52 final size:52
Alignment explanation
Indices: 1326031--1326766 Score: 405
Period size: 52 Copynumber: 13.8 Consensus size: 52
1326021 GATAACAATG
* * * * * * *
1326031 AAAAGAGTGCCAATGTGTTGATTCAAGGTCAGGGACATTAGACGTAA-AGATGA
1 AAAAG-GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGA-AAGA
* ** * *
1326084 CAAAGGCACCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
* * *
1326136 AAAAGGTGCCAATGTGCTGATTCACGGCTAGCGACATTGGACTTAAAAGTGAAAGGAA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT--AA--GAAA-G-A
* * * *
1326194 TGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGA-TTAA-AGATGG
1 --A-AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATT-GGACTTAAGA-AAGA
* * * * * * *
1326249 CAAAGGTGCCAATGTGCTAATTCAAGGCCAGTGACATTAGAGTTAA-AGATGA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGA-AAGA
* ** * * *
1326301 CAAAGGCACCAATATGCTAATTCAAGGCCAGCGATATTGGACTTTAAGATA-A
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-TTAAGAAAGA
* ** * ** *** **
1326353 CAAAGGCACCAATATGCTGATTCAAGGCCAATGATATCAAACTTAA-AGATTA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGA-AAGA
* * * * * *
1326405 CAAAGGCGCCAATATGCTGATTTAAGCCCA-CTGATATTAGACTTAAGAAAGA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGC-GATATTGGACTTAAGAAAGA
* * * * * *
1326457 AAAAGGTGCC-ATGTGCTAATTCACGACTAGTGATACTGGACTTAAGAAAGA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
* * ** * *
1326508 AAAAGGTTCCAATGTGCGGATTCAAGGCCAATGACATTAGACTT-AGAAAG-
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
* * * * *
1326558 AGAAGGTTTGACAAGTTCGAATGTGTTGATTCAAAGTCAGCGACATTGGACTTAA-AAATGA
1 AAAAGG--TG-C-----C-AATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAA-GA
* ** * * * * *
1326619 CAAAGGCACTAATATGCTGATTCAAGGCCAGCGATATTAGACTGAAGGAAGA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
* * *
1326671 AAAAGGTGTCAATGTGCTGATTCACGGCCAGCAATATTGGACTTAAGAAAGA
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
* * ** * *
1326723 AAGAGGTGCCAATGTGTTGACACATGGCCAACGATATTGGACTT
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1326767 TGTAAACACC
Statistics
Matches: 531, Mismatches: 118, Indels: 69
0.74 0.16 0.10
Matches are distributed among these distances:
50 6 0.01
51 52 0.10
52 368 0.69
53 13 0.02
54 3 0.01
56 6 0.01
57 2 0.00
58 3 0.01
59 32 0.06
60 3 0.01
61 40 0.08
62 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (52 bp):
AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGA
Found at i:1326278 original size:165 final size:163
Alignment explanation
Indices: 1325989--1326501 Score: 467
Period size: 165 Copynumber: 3.2 Consensus size: 163
1325979 CTAGTGTACA
* * * * * *
1325989 AATTCAAGGCCAGTGATATTGGACTTAAAAGTGATAACAATGAAAAGAGTGCCAATGTGTTGATT
1 AATTCACGGCTAGCGATATTGGACTTAAAAGTGA-AAGAATGAAAAG-GTGCCAATATGCTGATT
* * * * *
1326054 CAAGG-TCAGGGACATTAGACGTAAAGATGACAAAGGCACCAATATGTTGATTCAAGGCCAGCGA
64 CAAGGCT-AGCGATATTAGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGA
*
1326118 TATTGGACTTAAGAAAGAAAAAGGTGCCAATGTGCT
128 TATTAGACTTAAGAAAGAAAAAGGTGCCAATGTGCT
* *
1326154 GATTCACGGCTAGCGACATTGGACTTAAAAGTGAAAGGAATGATAAAGGTGCCAATATGCTGATT
1 AATTCACGGCTAGCGATATTGGACTTAAAAGTGAAA-GAATGA-AAAGGTGCCAATATGCTGATT
* * * * * *
1326219 CAAGGCTAGCGATATTGGGA-TTAAAGATGGCAAAGGTGCCAATGTGCTAATTCAAGGCCAGTGA
64 CAAGGCTAGCGATATT-AGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGA
* * * * ** *
1326283 CATTAGAGTTAA-AGATGACAAAGGCACCAATATGCT
128 TATTAGACTTAAGA-AAGAAAAAGGTGCCAATGTGCT
* * * **
1326319 AATTCAAGGCCAGCGATATTGGACTT-----T--AAG-ATAACAAAGGCACCAATATGCTGATTC
1 AATTCACGGCTAGCGATATTGGACTTAAAAGTGAAAGAATGA-AAAGGTGCCAATATGCTGATTC
* ** * * * * *
1326376 AAGGCCAATGATATCAAACTTAAAGATTACAAAGGCGCCAATATGCTGATTTAAGCCCA-CTGAT
65 AAGGCTAGCGATATTAGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGC-GAT
1326440 ATTAGACTTAAGAAAGAAAAAGGTGCC-ATGTGCT
129 ATTAGACTTAAGAAAGAAAAAGGTGCCAATGTGCT
* * *
1326474 AATTCACGACTAGTGATACTGGACTTAA
1 AATTCACGGCTAGCGATATTGGACTTAA
1326502 GAAAGAAAAA
Statistics
Matches: 277, Mismatches: 61, Indels: 28
0.76 0.17 0.08
Matches are distributed among these distances:
155 28 0.10
156 89 0.32
157 2 0.01
158 2 0.01
160 1 0.00
164 3 0.01
165 145 0.52
166 7 0.03
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (163 bp):
AATTCACGGCTAGCGATATTGGACTTAAAAGTGAAAGAATGAAAAGGTGCCAATATGCTGATTCA
AGGCTAGCGATATTAGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATAT
TAGACTTAAGAAAGAAAAAGGTGCCAATGTGCT
Found at i:1327103 original size:20 final size:21
Alignment explanation
Indices: 1327052--1327103 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1327042 TTTTACAATT
*
1327052 TGTATTGATACAAACAGTTAG
1 TGTATTGATACAAACAGTTAA
** *
1327073 TGTATCCATACATA-AGTTAA
1 TGTATTGATACAAACAGTTAA
1327093 TGTATTGATAC
1 TGTATTGATAC
1327104 TTGCCTAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACAAACAGTTAA
Found at i:1327660 original size:12 final size:12
Alignment explanation
Indices: 1327643--1327681 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
1327633 GTAAACCCTT
*
1327643 TTTTCAATCACA
1 TTTTCAACCACA
1327655 TTTTCAACCACA
1 TTTTCAACCACA
* *
1327667 TTATCAGCCACA
1 TTTTCAACCACA
1327679 TTT
1 TTT
1327682 CATCCAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (12 bp):
TTTTCAACCACA
Found at i:1334453 original size:36 final size:38
Alignment explanation
Indices: 1334387--1334458 Score: 103
Period size: 36 Copynumber: 1.9 Consensus size: 38
1334377 AGTTCCCTTC
*
1334387 AAAAATGACAAAAAAAAGAAGTAAAAAGCAAAAGCAGG
1 AAAAATGACAAAAAAAACAAGTAAAAAGCAAAAGCAGG
* *
1334425 AAAACTGA-AAAAAAAACAAG-AAAGAGCAAAAGCA
1 AAAAATGACAAAAAAAACAAGTAAAAAGCAAAAGCA
1334459 AAATAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 13 0.42
37 11 0.35
38 7 0.23
ACGTcount: A:0.69, C:0.10, G:0.17, T:0.04
Consensus pattern (38 bp):
AAAAATGACAAAAAAAACAAGTAAAAAGCAAAAGCAGG
Found at i:1338384 original size:19 final size:21
Alignment explanation
Indices: 1338360--1338412 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
1338350 CTGCCAGTTT
*
1338360 CATGTATCGATACAATG-A-A
1 CATGTATCGATACAAAGCATA
1338379 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAGCATA
1338400 -ATGTATCGATACA
1 CATGTATCGATACA
1338413 TCTGGATGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (21 bp):
CATGTATCGATACAAAGCATA
Found at i:1344248 original size:19 final size:18
Alignment explanation
Indices: 1344224--1344283 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 18
1344214 GATACAATGC
1344224 ATCGATACATAAGTGTTGT
1 ATCGATACATAAGT-TTGT
1344243 ATCGATAC---A--TTGT
1 ATCGATACATAAGTTTGT
1344256 ATCGATACATAAGTTTTGT
1 ATCGATACATAAG-TTTGT
1344275 ATCGATACA
1 ATCGATACA
1344284 ATGTATCGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.34
16 2 0.06
19 21 0.60
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
ATCGATACATAAGTTTGT
Found at i:1344248 original size:32 final size:32
Alignment explanation
Indices: 1344207--1344296 Score: 144
Period size: 32 Copynumber: 2.8 Consensus size: 32
1344197 TTTCAACAAT
*
1344207 TTGTATCGATACAATGCATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
* *
1344239 TTGTATCGATACATTGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
1344271 TTGTATCGATACAATGTATCGCTACA
1 TTGTATCGATACAATGTATCGATACA
1344297 AAGCTACTAC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:1344257 original size:13 final size:13
Alignment explanation
Indices: 1344239--1344265 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1344229 TACATAAGTG
1344239 TTGTATCGATACA
1 TTGTATCGATACA
1344252 TTGTATCGATACA
1 TTGTATCGATACA
1344265 T
1 T
1344266 AAGTTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1349461 original size:3 final size:3
Alignment explanation
Indices: 1349453--1349483 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
1349443 TCCAAGTCAA
*
1349453 CAT CAT CAT CAT CAT CAT CAT CTT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1349484 TTTGATGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:1351096 original size:20 final size:20
Alignment explanation
Indices: 1351071--1351124 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1351061 GTTTGAAGCA
*
1351071 ATGTATCGATACAAT-TCGTC
1 ATGTATCGATACAATGT-GCC
1351091 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
1351111 ATGTATCGATACAA
1 ATGTATCGATACAA
1351125 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:1351221 original size:20 final size:19
Alignment explanation
Indices: 1351173--1351225 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
1351163 TATAATTGTC
*
1351173 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
*
1351192 CATATATCGATACAAAGCATA
1 CATGTATCGATACAAAG-A-A
1351213 -ATGTATCGATACA
1 CATGTATCGATACA
1351226 TTTAGATGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 15 0.52
20 13 0.45
21 1 0.03
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.26
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:1352998 original size:34 final size:33
Alignment explanation
Indices: 1352922--1353021 Score: 123
Period size: 34 Copynumber: 3.0 Consensus size: 33
1352912 TAGAAGGAAA
* * *
1352922 TGCCACCAACTTATGTGGGCTTT-TGAGAGGTT
1 TGCCACCGACTTATGTGGGCTTTAAGAGAGGGT
1352954 TGCCACCGACTTATGTGGGCTTTAAGAGAAGGGT
1 TGCCACCGACTTATGTGGGCTTTAAGAG-AGGGT
* *
1352988 TGCCATCGACTTGTGTGGGCTTT-AGAAGAGGGT
1 TGCCACCGACTTATGTGGGCTTTAAG-AGAGGGT
1353021 T
1 T
1353022 CCAAAAGTCA
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
32 22 0.37
33 11 0.18
34 27 0.45
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (33 bp):
TGCCACCGACTTATGTGGGCTTTAAGAGAGGGT
Found at i:1358963 original size:14 final size:14
Alignment explanation
Indices: 1358944--1358974 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
1358934 GATGATGATG
1358944 ATGGTCATGATGGA
1 ATGGTCATGATGGA
1358958 ATGGTCATGATGGA
1 ATGGTCATGATGGA
1358972 ATG
1 ATG
1358975 AATTCATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (14 bp):
ATGGTCATGATGGA
Found at i:1361070 original size:95 final size:97
Alignment explanation
Indices: 1360971--1361204 Score: 287
Period size: 95 Copynumber: 2.4 Consensus size: 97
1360961 AAAAATAGGG
1360971 TTGGAGTATCCCCTCAGAGGAATTGGGTTGGAGTATCCTCAACGA-TAACAATTTAGGCAAAAAT
1 TTGGAGTATCCCCTCAGAGGAATTGGGTTGGAGTATCCTCAAC-ATTAACAATTTAGGCAAAAAT
* *
1361035 AAGATT-TATCTTGGTAAG-TTTAAAAACGGGA
65 AAGATTAAATCTTGATAAGATTTAAAAACGGGA
* * * * * *
1361066 TTGGAGTATCCCCTCTGAGGAATGGGGTTGGAGTATCCCCAACATTGATAATTTAGGCATAAATA
1 TTGGAGTATCCCCTCAGAGGAATTGGGTTGGAGTATCCTCAACATTAACAATTTAGGCAAAAATA
* * *
1361131 ATATTCAAATCTTGATAAGATTTTAAAAATGGGG
66 AGATT-AAATCTTGATAAGA-TTTAAAAACGGGA
* *
1361165 TTGGAGTATCCCCTCGGA-GAAATGGAGTTGGAGTATCCTC
1 TTGGAGTATCCCCTCAGAGGAATTGG-GTTGGAGTATCCTC
1361205 GATGAATAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
94 1 0.01
95 61 0.52
97 10 0.08
98 5 0.04
99 41 0.35
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (97 bp):
TTGGAGTATCCCCTCAGAGGAATTGGGTTGGAGTATCCTCAACATTAACAATTTAGGCAAAAATA
AGATTAAATCTTGATAAGATTTAAAAACGGGA
Found at i:1370075 original size:54 final size:54
Alignment explanation
Indices: 1370016--1370146 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
1370006 CAGAAATGGC
* * * *
1370016 GGGGTTAGAGTATCCCCTAAAATTAAAAAAATTTGATGTTTAGAAAATAAAAAT
1 GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTTTAGAAAATAAAAAT
* * *
1370070 GGGGTTGGAGTATCCCCTGAGATTAAAAAAAATCGAAGTTTAGGAAATAAAAAT
1 GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTTTAGAAAATAAAAAT
1370124 GGGGTTGGAGTATCCCCTCAAAA
1 GGGGTTGGAGTATCCCCT-AAAA
1370147 ATAGTGGGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 65 0.97
55 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (54 bp):
GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTTTAGAAAATAAAAAT
Found at i:1370357 original size:10 final size:10
Alignment explanation
Indices: 1370342--1370368 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1370332 AATCTTCACT
1370342 TTTTTTTTTG
1 TTTTTTTTTG
1370352 TTTTTTTTTG
1 TTTTTTTTTG
1370362 TTTTTTT
1 TTTTTTT
1370369 CTTTTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:1370385 original size:18 final size:18
Alignment explanation
Indices: 1370363--1370409 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
1370353 TTTTTTTTGT
*
1370363 TTTTTTCTTTTTTCTTACC
1 TTTTTT-TTTTCTCTTACC
* *
1370382 TTTTTTTTTTCTTTTTCC
1 TTTTTTTTTTCTCTTACC
1370400 TTTTTTTTTT
1 TTTTTTTTTT
1370410 ACAATTGCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTCTCTTACC
Found at i:1371061 original size:16 final size:15
Alignment explanation
Indices: 1371037--1371066 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1371027 AAAACCAGCC
1371037 TAAAAAAAATAAAAA
1 TAAAAAAAATAAAAA
1371052 TAAAATAAAATAAAA
1 TAAAA-AAAATAAAA
1371067 GATATGAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:1379760 original size:54 final size:54
Alignment explanation
Indices: 1379701--1379831 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
1379691 CAGAAATGGC
* * * *
1379701 GGGGTTAGAGTATCCCCTAAAATTAAAAAAATTTGATGTTTAGAAAATAAAAAT
1 GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTTTAGAAAATAAAAAT
* * *
1379755 GGGGTTGGAGTATCCCCTGAGATTAAAAAAAATCGAAGTTTAGGAAATAAAAAT
1 GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTTTAGAAAATAAAAAT
1379809 GGGGTTGGAGTATCCCCTCAAAA
1 GGGGTTGGAGTATCCCCT-AAAA
1379832 ATAGTGGGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 65 0.97
55 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (54 bp):
GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTTTAGAAAATAAAAAT
Found at i:1380032 original size:1 final size:1
Alignment explanation
Indices: 1380026--1380095 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
1380016 AAATCTTCAC
* * * * *** * **
1380026 TTTTTTTTTTGTTTTTTTTTTGTTTTTTTCTTTTTTCTTACCTTTTTTTTTTCTTTTTCCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1380091 TTTTT
1 TTTTT
1380096 ACAATTGCCA
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.01, C:0.10, G:0.03, T:0.86
Consensus pattern (1 bp):
T
Found at i:1380043 original size:12 final size:11
Alignment explanation
Indices: 1380026--1380054 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
1380016 AAATCTTCAC
1380026 TTTTTTTTTTG
1 TTTTTTTTTTG
1380037 TTTTTTTTTTG
1 TTTTTTTTTTG
1380048 TTTTTTT
1 TTTTTTT
1380055 CTTTTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:1380059 original size:18 final size:17
Alignment explanation
Indices: 1380026--1380095 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
1380016 AAATCTTCAC
*
1380026 TTTTT-TTTTTGTTTTT
1 TTTTTCTTTTTTTTTTT
*
1380042 TTTTTGTTTTTTTCTTTT
1 TTTTTCTTTTTTT-TTTT
*
1380060 TTCTTACCTTTTTTTTTTCT
1 TT-TT-TCTTTTTTTTTT-T
*
1380080 TTTTCCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
1380096 ACAATTGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
16 5 0.11
17 6 0.13
18 18 0.39
19 7 0.15
20 10 0.22
ACGTcount: A:0.01, C:0.10, G:0.03, T:0.86
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTTT
Found at i:1380093 original size:11 final size:10
Alignment explanation
Indices: 1380027--1380094 Score: 59
Period size: 10 Copynumber: 6.9 Consensus size: 10
1380017 AATCTTCACT
*
1380027 TTTTTTTTTG
1 TTTTTTTTTC
1380037 TTTTTTTTT-
1 TTTTTTTTTC
*
1380046 TGTTTTTTTC
1 TTTTTTTTTC
*
1380056 TTTTTTCTTAC
1 TTTTTT-TTTC
*
1380067 CTTTTTTTT-
1 TTTTTTTTTC
* *
1380076 TTCTTTTTCC
1 TTTTTTTTTC
1380086 TTTTTTTTT
1 TTTTTTTTT
1380095 TACAATTGCC
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
9 14 0.31
10 23 0.51
11 8 0.18
ACGTcount: A:0.01, C:0.10, G:0.03, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:1380747 original size:16 final size:15
Alignment explanation
Indices: 1380723--1380752 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1380713 AAAACCAGCC
1380723 TAAAAAAAATAAAAA
1 TAAAAAAAATAAAAA
1380738 TAAAATAAAATAAAA
1 TAAAA-AAAATAAAA
1380753 GATATGAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:1389427 original size:81 final size:82
Alignment explanation
Indices: 1389281--1389469 Score: 192
Period size: 82 Copynumber: 2.3 Consensus size: 82
1389271 TTGATTTTGG
* * * * *
1389281 TAAAAATCAAGGTTGGATTATCCCCTCGAAGATGGTGAGGTTGGAGTATCCCTAGAGATGT-AAA
1 TAAAAAT-GAGGTTGGAGTATCCCCTCGAAGATGGCGAGGTTAGAGTATCCCTAGAAATGTAAAA
*
1389345 AATTCAG-TGTTATAG-AAG
65 AATT-AGATG-TATAGAAAA
* *
1389363 TGAAAATGAGGTTGGAGTATCCCCTCAGAA-ATGGCGGGGTTAGAGTATCCCCTA-AAAT-TAAA
1 TAAAAATGAGGTTGGAGTATCCCCTC-GAAGATGGCGAGGTTAGAGTAT-CCCTAGAAATGT-AA
*
1389425 AAAATTTGATGTATAGAAAA
63 AAAATTAGATGTATAGAAAA
*
1389445 TAAAAATGGGGTTGGAGTATCCCCT
1 TAAAAATGAGGTTGGAGTATCCCCT
1389470 GAGATTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
80 1 0.01
81 41 0.46
82 48 0.53
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (82 bp):
TAAAAATGAGGTTGGAGTATCCCCTCGAAGATGGCGAGGTTAGAGTATCCCTAGAAATGTAAAAA
ATTAGATGTATAGAAAA
Found at i:1389457 original size:54 final size:54
Alignment explanation
Indices: 1389398--1389528 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
1389388 CAGAAATGGC
* * * *
1389398 GGGGTTAGAGTATCCCCTAAAATTAAAAAAATTTGATGTATAGAAAATAAAAAT
1 GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTATAGAAAATAAAAAT
* * * *
1389452 GGGGTTGGAGTATCCCCTGAGATTAAAAAAAATCGAAGTTTAGGAAATAAAAAT
1 GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTATAGAAAATAAAAAT
1389506 GGGGTTGGAGTATCCCCTCAAAA
1 GGGGTTGGAGTATCCCCT-AAAA
1389529 ATAGTGGGAT
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 64 0.97
55 2 0.03
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (54 bp):
GGGGTTGGAGTATCCCCTAAAATTAAAAAAAATCGAAGTATAGAAAATAAAAAT
Done.