Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold366
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 222455
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
File 1 of 2
Found at i:5074 original size:8 final size:8
Alignment explanation
Indices: 5061--5088 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
5051 TTAAATTGTA
5061 TGATTTTG
1 TGATTTTG
5069 TGATTTTG
1 TGATTTTG
5077 TGATTTTG
1 TGATTTTG
5085 TGAT
1 TGAT
5089 GAATGATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.25, T:0.61
Consensus pattern (8 bp):
TGATTTTG
Found at i:5477 original size:22 final size:21
Alignment explanation
Indices: 5434--5474 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
5424 CAAATTTCTT
5434 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAATACATC
5456 GTTTTTCA-TCAAAAT-CATC
1 GTTTTTCACTCAAAATACATC
5475 ATCAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (21 bp):
GTTTTTCACTCAAAATACATC
Found at i:5770 original size:20 final size:21
Alignment explanation
Indices: 5738--5789 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
5728 CCCCTAGGCA
*
5738 GCACCCACCAGGTCGCGACC-G
1 GCACCC-CCAGGTCGCAACCGG
5759 GCACCCCCAGGTCGCAACCGG
1 GCACCCCCAGGTCGCAACCGG
5780 GCAGCCCCCA
1 GCA-CCCCCA
5790 TACTAGCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 12 0.43
21 10 0.36
22 6 0.21
ACGTcount: A:0.19, C:0.50, G:0.27, T:0.04
Consensus pattern (21 bp):
GCACCCCCAGGTCGCAACCGG
Found at i:7172 original size:22 final size:21
Alignment explanation
Indices: 7151--7190 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7141 AGTGTTAAAT
*
7151 TATTTTACTAAGGGGGAGAAA
1 TATTTGACTAAGGGGGAGAAA
* *
7172 TGTTTGATTAAGGGGGAGA
1 TATTTGACTAAGGGGGAGA
7191 GAAAAGAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.35, T:0.30
Consensus pattern (21 bp):
TATTTGACTAAGGGGGAGAAA
Found at i:7781 original size:20 final size:20
Alignment explanation
Indices: 7756--7809 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
7746 GTATCGATAC
**
7756 AATGTATCGATACATGACTA
1 AATGTATCGATACATGAAAA
*
7776 AATGTATCGATACTTGAAAA
1 AATGTATCGATACATGAAAA
7796 AATGTATCGATACA
1 AATGTATCGATACA
7810 AGTCATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:7879 original size:13 final size:13
Alignment explanation
Indices: 7861--7885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7851 ACACACAGTA
7861 TGTATCGATACAT
1 TGTATCGATACAT
7874 TGTATCGATACA
1 TGTATCGATACA
7886 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7882 original size:32 final size:33
Alignment explanation
Indices: 7841--7908 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
7831 GTAGCTAAAC
**
7841 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
7873 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
7906 TTG
1 TTG
7909 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:12491 original size:148 final size:145
Alignment explanation
Indices: 12301--13017 Score: 539
Period size: 148 Copynumber: 4.9 Consensus size: 145
12291 AAATAAAGGA
* * * * *
12301 AAAACCAAACCTATCCCTAATACATACCTTCGGCATAAAAGCGACTCGGTGACAAATTAGGACTC
1 AAAAGCAAA-CTATGCCTAATACGTACCCTCGGCATAGAAGCGACTCGGTGACAAATTAGGACTC
* * *
12366 AGCTCTA-AAAGAATTATGAAAATGCCCCTATGGGTATACCTTTGACATGAAAGTATCCCGATAA
65 -GTTCTAGAAA-AATCATGAAAATGCCCCTAT-GGTATACCTTCGACATGAAAGTATCCCGATAA
*
12430 GCCTAAAAAACTTAAAAAG
127 CCCTAAAAAACTTAAAAAG
* *
12449 AAAAGTGAAACTATGCCTAATACGTACCCTCGGCATAGAAGCGAC-CTGATGACAAATTAGGACT
1 AAAAG-CAAACTATGCCTAATACGTACCCTCGGCATAGAAGCGACTC-GGTGACAAATTAGGACT
* ** * * * * * * * *
12513 CGGTTCTAGAAAAA-CGCT-AAAA-GTTCCTATTGTCTACCATCGAC-TCAAAAGT-GCTCGGTG
64 C-GTTCTAGAAAAATC-ATGAAAATGCCCCTATGGTATACCTTCGACAT-GAAAGTATCCCGATA
** * ** *
12573 ATGCTAGAGGAGTTAAAAAG
126 ACCCTAAAAAACTTAAAAAG
* ** * * * *
12593 CAAAAGCCAACTTACACCTAATACGTACCCTTGACATAGAAGCGACCCAGTGACAACA-TAGGAC
1 -AAAAGCAAAC-TATGCCTAATACGTACCCTCGGCATAGAAGCGACTCGGTGACAA-ATTAGGAC
* * * ** * * **
12657 TCGATTCTAAAAAAATTATGAAAATGCCCTTACAAGTATACATTCGACGTGAAAGTATTTCGATA
63 TCG-TTCTAGAAAAATCATGAAAATGCCCCTA-TGGTATACCTTCGACATGAAAGTATCCCGATA
12722 ACCCTAAAAAACTTAAAAAGG
126 ACCCTAAAAAACTTAAAAA-G
* * ** * * *
12743 AAAAGCAAAC-CTGCACTTAATACATACCCTCGATATAAAAG-GACTCGGTGATAAATTAAGACT
1 AAAAGCAAACTATGC-C-TAATACGTACCCTCGGCATAGAAGCGACTCGGTGACAAATTAGGACT
*
12806 CAGTTCTAGAAAAATCATGAAAATG-CCC--T--TATACCTTCGACATGAAAGTA-CCTGATAAC
64 C-GTTCTAGAAAAATCATGAAAATGCCCCTATGGTATACCTTCGACATGAAAGTATCCCGATAAC
* *
12865 ACTAAAAGACTTAAAAAG
128 CCTAAAAAACTTAAAAAG
* * * ** * *
12883 GAATGCAAACCTATGCCTAATACGCACTTTTGGCATAGAAGCAACTCGGTGACAAATTAGGACTC
1 AAAAGCAAA-CTATGCCTAATACGTACCCTCGGCATAGAAGCGACTCGGTGACAAATTAGGACTC
* * * * *
12948 GATTTTAGAAAAATCATGAAAATACCCCTCTAGGTATACCTTTGACATGAAAGTATCCTGATAAC
65 G-TTCTAGAAAAATCATGAAAATGCCCCTAT-GGTATACCTTCGACATGAAAGTATCCCGATAAC
13013 CCTAA
128 CCTAA
13018 TGGACAAGAA
Statistics
Matches: 438, Mismatches: 99, Indels: 64
0.73 0.16 0.11
Matches are distributed among these distances:
140 25 0.06
141 63 0.14
142 25 0.06
144 24 0.05
145 75 0.17
146 12 0.03
147 33 0.08
148 126 0.29
149 54 0.12
150 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (145 bp):
AAAAGCAAACTATGCCTAATACGTACCCTCGGCATAGAAGCGACTCGGTGACAAATTAGGACTCG
TTCTAGAAAAATCATGAAAATGCCCCTATGGTATACCTTCGACATGAAAGTATCCCGATAACCCT
AAAAAACTTAAAAAG
Found at i:15154 original size:173 final size:163
Alignment explanation
Indices: 14807--15329 Score: 452
Period size: 173 Copynumber: 3.1 Consensus size: 163
14797 AATGACAATG
* *
14807 TTTGATGAATTTTAAAAATTTTAAACCT-AGAAAAATCCCC-CTGAAAACATTTATAGAATAGAA
1 TTTGATGAATTTTAAAAATTATAAA-CTAAGAAAAATCCCCTC-GAAAACATTTACAGAATAGAA
* * **
14870 AATCGATTTTTCAAAACAAGGAAATTTCAAAGAAAAAATGAAAAACTTATGTAAATAATTGGATT
64 AATCGATATTTCAAAACAA-GAAATTTCAAAGAAAAAATGAAAAAATTATGTAAATAAAAGGATT
* *
14935 TTTCAAAACTGATTTACTATGAATTAAATGATGATA
128 TTTCAAAACTAATTAACTATGAATTAAATGATGATA
* *
14971 TTTGATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCGAAAAGCATTTACGGAATTGAAA
1 TTTGATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCGAAAA-CATTTACAGAATAGAAA
* *
15036 ACTCTG-TATTTCAAAAAGCAA-AAGTATTTGAAAGCCAAAAAATGAAAAAAATTCATG-AAGTA
65 A-TC-GATATTTC-AAAA-CAAGAA--ATTTCAAAG--AAAAAATG-AAAAAATT-ATGTAAATA
* * * *
15098 AAAGGAATTTTTCAAAACTAATATAATTGTGAATTATATGATGGTA
120 AAAGG-ATTTTTCAAAACTAAT-TAACTATGAATTAAATGATGATA
* * * * * *
15144 TTTGATGAATTTTAAAAATTATAAACCAAGACAAATCCCTTCGCAAACATTTATAGAGTAGAAAA
1 TTTGATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCGAAAACATTTACAGAATAGAAAA
* * * * * * * *
15209 CTTCG-TATTTTGAAAATAGAAAAATTTTAAAGAAAAAAT-AAAAAACTCATGAAAATAAATGAA
66 --TCGATA-TTTCAAAACA-AGAAATTTCAAAGAAAAAATGAAAAAA-TTATGTAAATAAAAGGA
* * * * *
15272 TTTTTTAAAA-TCAATTTAA-TTTGAGTTAAATAATAATA
126 TTTTTCAAAACT-AA-TTAACTATGAATTAAATGATGATA
*
15310 TTTGATGAATATTAAAAATT
1 TTTGATGAATTTTAAAAATT
15330 TTCAACAGAT
Statistics
Matches: 296, Mismatches: 40, Indels: 44
0.78 0.11 0.12
Matches are distributed among these distances:
163 2 0.01
164 41 0.14
165 16 0.05
166 42 0.14
167 29 0.10
168 20 0.07
169 7 0.02
170 8 0.03
171 23 0.08
172 40 0.14
173 68 0.23
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.32
Consensus pattern (163 bp):
TTTGATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCGAAAACATTTACAGAATAGAAAA
TCGATATTTCAAAACAAGAAATTTCAAAGAAAAAATGAAAAAATTATGTAAATAAAAGGATTTTT
CAAAACTAATTAACTATGAATTAAATGATGATA
Found at i:15382 original size:166 final size:166
Alignment explanation
Indices: 14899--15478 Score: 416
Period size: 166 Copynumber: 3.5 Consensus size: 166
14889 GGAAATTTCA
* * ** ** * *
14899 AAGAAAAAATGAAAAACTTATGTAAATAATTG-GATTTTTCAAAACTGATTT-ACTATGAATTAA
1 AAGAAAAAATAAAAAACTCATG-AAATAAAAGAGATTTTGAAAAACTAATTTAATTATG-ATTAA
* * * * * * *
14962 ATGATGATATTTGATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCGAAAAGCATTTAC-
64 ATAATAATATTTGATGAATATTAAAAATTATAAACCAAGACAAATCCCTTCGAAAA-AATTTACA
* * *
15026 G-GAATTGAAAAC-TCTGTATTTC-AAAA-AGCAAAAGTATTTGA
128 GAGAA--AAAAACTTC-GTATTTCGAAAATAGGAAAA--ATTT-T
* * ** * *
15067 AAGCCAAAAAATGAAAAAAATTCATGAAGTAAAAG-GAATTTTTCAAAACTAATATAATTGTGAA
1 AAG--AAAAAAT--AAAAAACTCATGAAATAAAAGAG-ATTTTGAAAAACTAATTTAATTATG-A
* * ** * * *
15131 TTATATGATGGTATTTGATGAATTTTAAAAATTATAAACCAAGACAAATCCCTTCGCAAACATTT
60 TTAAATAATAATATTTGATGAATATTAAAAATTATAAACCAAGACAAATCCCTTCGAAAAAATTT
* * * *
15196 ATAGAGTAGAAAACTTCGTATTTTGAAAATA-GAAAAATTTT
125 ACAGAGAAAAAAACTTCGTATTTCGAAAATAGGAAAAATTTT
* **
15237 AAAGAAAAAATAAAAAACTCATGAAAATAAATGA-ATTTTTTAAAA-TCAATTTAATT-TGAGTT
1 -AAGAAAAAATAAAAAACTCATG-AAATAAAAGAGATTTTGAAAAACT-AATTTAATTATGA-TT
* *
15299 AAATAATAATATTTGATGAATATTAAAAATTTTCAA-CAGATGA-AAATCCTCTT-GAAAAAATT
62 AAATAATAATATTTGATGAATATTAAAAATTATAAACCA-A-GACAAATCC-CTTCGAAAAAATT
* * **
15361 TACAGAGAAAAAAATTTCGTATTTCGAAAGTAGGAGGAATTTT
124 TACAGAGAAAAAAACTTCGTATTTCGAAAATAGGAAAAATTTT
* * * * *
15404 AGGGAAAAATGAAAAACTCTTGAAATAAAAGAGATTTTGAAAAACTAATTTAATTATGATTGAAT
1 AAGAAAAAATAAAAAACTCATGAAATAAAAGAGATTTTGAAAAACTAATTTAATTATGATTAAAT
15469 AATAATATTT
66 AATAATATTT
15479 AAATAATTTT
Statistics
Matches: 338, Mismatches: 51, Indels: 48
0.77 0.12 0.11
Matches are distributed among these distances:
165 12 0.04
166 125 0.37
167 46 0.14
168 10 0.03
169 7 0.02
170 7 0.02
171 14 0.04
172 43 0.13
173 71 0.21
174 3 0.01
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (166 bp):
AAGAAAAAATAAAAAACTCATGAAATAAAAGAGATTTTGAAAAACTAATTTAATTATGATTAAAT
AATAATATTTGATGAATATTAAAAATTATAAACCAAGACAAATCCCTTCGAAAAAATTTACAGAG
AAAAAAACTTCGTATTTCGAAAATAGGAAAAATTTT
Found at i:18866 original size:22 final size:21
Alignment explanation
Indices: 18841--18890 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
18831 GATGTGCTTA
18841 AAAAGAAAGA-AAGAAGAATTAG
1 AAAAGAAA-ATAAG-AGAATTAG
*
18863 AAAAGAAAATAAGTGAATTAG
1 AAAAGAAAATAAGAGAATTAG
18884 AAAAGAA
1 AAAAGAA
18891 GGTAATTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (21 bp):
AAAAGAAAATAAGAGAATTAG
Found at i:18949 original size:21 final size:21
Alignment explanation
Indices: 18919--18959 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
18909 TGGTAATAAA
18919 GAATTAGCTAATGAA-AACAAC
1 GAATTAGCTAA-GAAGAACAAC
*
18940 GAATTGGCTAAGAAGAACAA
1 GAATTAGCTAAGAAGAACAA
18960 GGACCTGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.51, C:0.12, G:0.20, T:0.17
Consensus pattern (21 bp):
GAATTAGCTAAGAAGAACAAC
Found at i:22357 original size:12 final size:12
Alignment explanation
Indices: 22328--22402 Score: 58
Period size: 12 Copynumber: 6.8 Consensus size: 12
22318 GAGAAAGAAA
22328 AGATAGGAGG-G
1 AGATAGGAGGAG
*
22339 ATAATAGGAGGAG
1 A-GATAGGAGGAG
22352 AGATAGGA--A-
1 AGATAGGAGGAG
*
22361 AGAT---AGTAG
1 AGATAGGAGGAG
22370 AGATAGGAGG-G
1 AGATAGGAGGAG
22381 ATGATAGGAGGAG
1 A-GATAGGAGGAG
22394 AGATAGGAG
1 AGATAGGAG
22403 AGATAATAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 19
0.70 0.04 0.26
Matches are distributed among these distances:
6 1 0.02
8 1 0.02
9 8 0.16
10 1 0.02
11 3 0.06
12 33 0.65
13 4 0.08
ACGTcount: A:0.43, C:0.00, G:0.44, T:0.13
Consensus pattern (12 bp):
AGATAGGAGGAG
Found at i:22359 original size:9 final size:9
Alignment explanation
Indices: 22347--22407 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
22337 GGATAATAGG
22347 AGGAGAGAT
1 AGGAGAGAT
*
22356 AGGAAAGAT
1 AGGAGAGAT
*
22365 AGTAGAGAT
1 AGGAGAGAT
*
22374 AGGAGGGAT
1 AGGAGAGAT
* *
22383 --GATAG-G
1 AGGAGAGAT
22389 AGGAGAGAT
1 AGGAGAGAT
22398 AGGAGAGAT
1 AGGAGAGAT
22407 A
1 A
22408 ATAGAGAGAG
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.44, C:0.00, G:0.43, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:22375 original size:42 final size:42
Alignment explanation
Indices: 22328--22435 Score: 180
Period size: 42 Copynumber: 2.6 Consensus size: 42
22318 GAGAAAGAAA
* *
22328 AGATAGGAGGGATAATAGGAGGAGAGATAGGAAAGATAGTAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAAAGATAATAG
*
22370 AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAAAGATAATAG
*
22412 AGAGAGGAGGGATGATAGGAGGAG
1 AGATAGGAGGGATGATAGGAGGAG
22436 GAGAGAAGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.43, C:0.00, G:0.44, T:0.13
Consensus pattern (42 bp):
AGATAGGAGGGATGATAGGAGGAGAGATAGGAAAGATAATAG
Found at i:22411 original size:12 final size:12
Alignment explanation
Indices: 22371--22416 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
22361 AGATAGTAGA
*
22371 GATAGGAGGGAT
1 GATAGGAGAGAT
22383 GATAGGAGGAGA-
1 GATAGGA-GAGAT
22395 GATAGGAGAGAT
1 GATAGGAGAGAT
*
22407 AATA-GAGAGA
1 GATAGGAGAGA
22417 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:22419 original size:18 final size:18
Alignment explanation
Indices: 22392--22441 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
22382 TGATAGGAGG
*
22392 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
22410 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
22428 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
22442 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.00, G:0.46, T:0.10
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:22433 original size:12 final size:12
Alignment explanation
Indices: 22371--22433 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 12
22361 AGATAGTAGA
22371 GATAGGAGGGAT
1 GATAGGAGGGAT
22383 GATAGGAGGAGA-
1 GATAGGAGG-GAT
*
22395 GATAGGAGAGAT
1 GATAGGAGGGAT
*
22407 AATA-GA--GA-
1 GATAGGAGGGAT
22415 G--AGGAGGGAT
1 GATAGGAGGGAT
22425 GATAGGAGG
1 GATAGGAGG
22434 AGGAGAGAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
6 1 0.03
7 2 0.05
9 4 0.10
10 1 0.03
11 4 0.10
12 26 0.65
13 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.48, T:0.13
Consensus pattern (12 bp):
GATAGGAGGGAT
Found at i:24681 original size:19 final size:20
Alignment explanation
Indices: 24633--24684 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
24623 TTACAAGCCA
24633 ATGTATCGATACATTTGATC
1 ATGTATCGATACATTTGATC
24653 ATGTATCGATACATCTTG-T-
1 ATGTATCGATACAT-TTGATC
*
24672 ATGTAACGATACA
1 ATGTATCGATACA
24685 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 12 0.40
20 15 0.50
21 3 0.10
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTTGATC
Found at i:24765 original size:19 final size:20
Alignment explanation
Indices: 24737--24786 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
24727 ATCTTTGCAA
* *
24737 GTATCAATACAGTG-GTCAT
1 GTATCGATACAGTGCATCAT
* *
24756 GTATCGATACTGTGCATTAT
1 GTATCGATACAGTGCATCAT
24776 GTATCGATACA
1 GTATCGATACA
24787 TCTGAAGGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (20 bp):
GTATCGATACAGTGCATCAT
Found at i:30680 original size:19 final size:19
Alignment explanation
Indices: 30652--30737 Score: 96
Period size: 19 Copynumber: 4.9 Consensus size: 19
30642 AAACAGAAAA
* *
30652 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTTT
30671 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTTT
*
30684 TGTATCAATACATAAGTTT
1 TGTATCGATACATAAGTTT
30703 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
30722 TGTATCGATACA-AAGT
1 TGTATCGATACATAAGT
30738 ATCACTACGA
Statistics
Matches: 58, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
13 10 0.17
15 2 0.03
17 2 0.03
18 4 0.07
19 40 0.69
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTTT
Found at i:30695 original size:32 final size:32
Alignment explanation
Indices: 30650--30714 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
30640 ACAAACAGAA
**
30650 AATGTATTGATACATAAGTGTTGTATCGATAC
1 AATGTATCAATACATAAGTGTTGTATCGATAC
*
30682 AATGTATCAATACATAAGTTTTGTATCGATAC
1 AATGTATCAATACATAAGTGTTGTATCGATAC
30714 A
1 A
30715 TAAGTTTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (32 bp):
AATGTATCAATACATAAGTGTTGTATCGATAC
Found at i:30784 original size:21 final size:21
Alignment explanation
Indices: 30758--30799 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
30748 AGCTACTGCC
30758 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
30779 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
30800 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:30804 original size:13 final size:13
Alignment explanation
Indices: 30786--30811 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30776 ATTAAGGAAA
30786 TGTATCGATACAT
1 TGTATCGATACAT
30799 TGTATCGATACAT
1 TGTATCGATACAT
30812 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:33221 original size:51 final size:50
Alignment explanation
Indices: 33165--33350 Score: 196
Period size: 51 Copynumber: 3.6 Consensus size: 50
33155 TAAGTTTCTC
* * *
33165 AATTTTTCACAATCGGGGGTACTCCAACCCCGGTTTTATTTCTGAAACGCT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAAC-CT
* * * *
33216 AATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTT-TCAAAACACC
1 AATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAAC-CT
** * *
33267 AA-TTTTCTACAATCGGGGATACTCCAACCAAGATTTTATTTCCAAAAACAT
1 AATTTTTC-ACAATCGGGGATACTCCAACCCCGATTTTATTT-CTAAAACCT
*
33318 CAAATTTTCACAATCGGGGATACTCCAACCCCG
1 -AATTTTTCACAATCGGGGATACTCCAACCCCG
33351 TCAATCATCG
Statistics
Matches: 111, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
50 5 0.05
51 72 0.65
52 29 0.26
53 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (50 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACCT
Found at i:33363 original size:27 final size:28
Alignment explanation
Indices: 33330--33405 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
33320 AATTTTCACA
33330 ATCGGGGATACTCCAACCCCGTCA-ATC
1 ATCGGGGATACTCCAACCCCGTCATATC
* *
33357 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTCATATC
***
33385 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
33406 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 23 0.53
28 20 0.47
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.20
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTCATATC
Found at i:33491 original size:78 final size:77
Alignment explanation
Indices: 33357--33579 Score: 281
Period size: 78 Copynumber: 2.9 Consensus size: 77
33347 CCCGTCAATC
* *
33357 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTCC-AAAAT
* *
33422 ATTGATTTCTCATA
65 ATCGATTT-TCACA
* * *
33436 ATCGGGGATACTCCAACCCTGTTA-TCCCAAAGGGATACTCCAACCCCGGTTTTATTTCC-AAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTA-TTCCAAAAT
33499 CATCGATTTTCACA
65 -ATCGATTTTCACA
** *
33513 ATCATGGATACTCCAACCCCATTATTTCCAAGGGGATACTCCAACCCC-GTTATTATCTCCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGTT-TTAT-TCCAAAA
33577 TAT
64 TAT
33580 GAAATTTCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
77 32 0.26
78 62 0.50
79 31 0.25
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (77 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTCCAAAATA
TCGATTTTCACA
Found at i:33574 original size:31 final size:28
Alignment explanation
Indices: 33518--33574 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 28
33508 TCACAATCAT
*
33518 GGATACTCCAACCCCATTATTTCCAAGG
1 GGATACTCCAACCCCATTATCTCCAAGG
33546 GGATACTCCAACCCCGTTATTATCTCCAA
1 GGATACTCCAACCCC---ATTATCTCCAA
33575 AATATGAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 15 0.60
31 10 0.40
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.26
Consensus pattern (28 bp):
GGATACTCCAACCCCATTATCTCCAAGG
Found at i:39792 original size:62 final size:60
Alignment explanation
Indices: 39716--39979 Score: 339
Period size: 60 Copynumber: 4.3 Consensus size: 60
39706 CTCTTTTAGC
* * * *
39716 CCTTCCAGTCCTCAAAGAGCAGGACCCCTTTTTTCTTTTCAAAGCTCACACAAGTTGGTGGCA
1 CCTT-CAGTCCTCAAAGAGCAAGACGCC-TTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
* * * *
39779 CCTTCAGTCCTCAAAGAGCAAGATGCTTTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAAGACGC--CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
39841 CCTTTAGTCCTCAAAGAGCATGACACCTCTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
** *
39901 CCTTTTGTCCTCAAAAAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
39961 CCTTCTAGTCCTCAAAGAG
1 CCTTC-AGTCCTCAAAGAG
39980 TAGGACGCTC
Statistics
Matches: 174, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
60 89 0.51
61 11 0.06
62 62 0.36
63 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (60 bp):
CCTTCAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:40203 original size:61 final size:60
Alignment explanation
Indices: 40006--41198 Score: 1233
Period size: 61 Copynumber: 20.3 Consensus size: 60
39996 TTCACCCTTT
* *
40006 AGTCCTCAAAGAGCAGGACGCCTTT-C----AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
40061 AGTACTCAAAGAGCAGGATGCC--T-C--TTAAAGGCCACACAAGTTGGTGGCACCTTTT-
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* *
40116 -GTCCTCAAAAAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGATGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
**
40176 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGATGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
40237 AGTCCTCAAAGAGCAGGATG-----CCTTTTAAAGCCTACACAAGTTGGTGGCACCTTTT-
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
*
40292 -GTCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGATGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
40352 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGATGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
40413 AGTCCTCAAAGAGCAGGACG-C--T--TTTCAAAG-CCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
40467 AGTCCTCAAAAAGTAGGATG----T-CTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
40521 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT-
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* * * **
40581 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCGCTTCCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTC
* * ** *
40642 AGTCCTC-AAGACCAGGATG-----CCTTTTAAGGCCCACACAAGCCGATGGCAC-TTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* ** * * * *
40695 AGTCCTCAAAGAGCAGGACGCCTTCTCCTATGCAAAGCCCACATAAGCTAGTGGCAC-CTTC
1 AGTCCTCAAAGAGCAGGATGCCTT-TCCT-TTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
40756 AGTCCTCAAAGAGCAAGACGCCTTTCCTTTTCAAAGCCCAC-CTGAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTT-AAAGCCCACAC-AAGTTGGTGGCACTTTT-C
* * * *
40817 AGTCCTCAAGGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGGTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTT-C
* * *
40878 AGTCCTCAAAGAGCAGAATG-CTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTC-CTTT-TAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
40939 AGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTT-C
* * * * *
41000 AGTCCTCAAAAAGCAGGATG-CTTTCTCTTTGCAAAGCCCACATAAGTTGGTGGCACCTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTC-CTTT-TAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
41061 AGTCCTCAAAGAGCAAGATGCCTTTCTTTTTCAAAGCCCACACGAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTT-C
* * * ** * * * *
41122 AGTCCTCAATGAGTAGGTTG-CTTTCTCTCTGCAAAGCCCACACAAATTGGCGGCAC-CTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTC-CT-TTTAAAGCCCACACAAGTTGGTGGCACTTTTC
41182 TAGTCCTCAAAGAGCAG
1 -AGTCCTCAAAGAGCAG
41199 AACGCTCTCT
Statistics
Matches: 972, Mismatches: 106, Indels: 114
0.82 0.09 0.10
Matches are distributed among these distances:
53 12 0.01
54 132 0.14
55 101 0.10
56 7 0.01
57 2 0.00
58 2 0.00
59 39 0.04
60 145 0.15
61 515 0.53
62 17 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:40294 original size:176 final size:174
Alignment explanation
Indices: 40026--41198 Score: 1176
Period size: 176 Copynumber: 6.6 Consensus size: 174
40016 GAGCAGGACG
* * *
40026 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTACTCAAAGAGCAGGATGCCTCTT-AAA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCAAA
*
40090 GGCCACACAAGTTGGTGGCACCTTTTGTCCTCAAAAAGCAGGACGCCTTTTCCTTTTAAAGCCCA
66 GCCCACACAAGTTGGTGGCACCTTTTGTCCTCAAAAAGCAGGA-G-C-TTTCCTTTTAAAGCCCA
40155 CACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
128 CACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
*
40202 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGATGCCTTTT-AA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGATGCCTTTTCAA
*
40265 AGCCTACACAAGTTGGTGGCACCTTTTGTCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCC
65 AGCCCACACAAGTTGGTGGCACCTTTTGTCCTCAAAAAGCAGGA-G-C-TTTCCTTTTAAAGCCC
40330 ACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
127 ACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
40378 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACG-CTTTTCAAA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCAAA
* * *
40442 G-CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGTAGGA--TGT-CTTTTAAAGCCCACA
66 GCCCACACAAGTTGGTGGCACCTTT-TGTCCTCAAAAAGCAGGAGCTTTCCTTTTAAAGCCCACA
*
40503 CAAGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGGACGCCTTTT
130 CAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
*
40547 -CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCTTTTTCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGC-----CTTT
* ** * * * *
40611 TCAAAGCCCACACAAGTTGGTGGC-GCTTCCCAGTCCTC-AAGACCAGGA---TGCCTTTTAAGG
61 TCAAAGCCCACACAAGTTGGTGGCACCTT--TTGTCCTCAAAAAGCAGGAGCTTTCCTTTTAAAG
** * * *
40671 CCCACACAAGCCGATGGCAC-TTTCAGTCCTCAAAGAGCAGGACGCCTTCT
124 CCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * * *
40721 CCTATGCAAAGCCCACATAAGCTAGTGGCACC-TTCAGTCCTCAAAGAGCAAGACGCCTTTCCTT
1 CCT-TTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC-AG--G--ATGCCTT
* **
40785 TTCAAAGCCCAC-CTGAGTTGGTGGCA--TTTTCCAGTCCTCAAGGAGCAGGACGCCTTTCCTTT
60 TTCAAAGCCCACAC-AAGTTGGTGGCACCTTTT---GTCCTCAAAAAGCAGGA-G-CTTTCCTTT
* * *
40847 TCAAAGCCCACACGAGGTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGAATG-C-TTT
119 T-AAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGATGCCTTTT
* *
40902 CTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCCT
1 C-CTTT-TAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-----TGCCT
*
40967 TTTCAAAGCCCACACGAGTTGGTGGCA--TTTTCCAGTCCTCAAAAAGCAGGATGCTTTCTCTTT
59 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTT---GTCCTCAAAAAGCAGGA-GCTTTC-CTTT
* * * * *
41030 GCAAAGCCCACATAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGATGCC-TTT
119 -TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
41086 CTTTTTCAAAGCCCACACGAGTTGGTGGCA-TTTTCCAGTCCTCAATGAGTAGGTTGCTTTCTCT
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGATGC---CT-T
* * * * * *
41150 CTGCAAAGCCCACACAAATTGGCGGCACCTCCTAGTCCTCAAAGAGCAG
60 -TTCAAAGCCCACACAAGTTGGTGGCACCT-TTTGTCCTCAAAAAGCAG
41199 AACGCTCTCT
Statistics
Matches: 856, Mismatches: 83, Indels: 109
0.82 0.08 0.10
Matches are distributed among these distances:
168 52 0.06
169 29 0.03
170 29 0.03
171 2 0.00
174 77 0.09
175 103 0.12
176 266 0.31
177 2 0.00
178 3 0.00
180 3 0.00
181 13 0.02
182 58 0.07
183 209 0.24
184 8 0.01
185 1 0.00
186 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (174 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCAAA
GCCCACACAAGTTGGTGGCACCTTTTGTCCTCAAAAAGCAGGAGCTTTCCTTTTAAAGCCCACAC
AAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:41332 original size:55 final size:55
Alignment explanation
Indices: 41222--42105 Score: 910
Period size: 55 Copynumber: 15.3 Consensus size: 55
41212 TTCGCCCTTT
41222 AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCACTTTTC
* *
41283 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
*
41338 AGTCCTCAAAGAGCAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACATTTT-
1 AGTCCTCAAAGAGCAGG--A----CGCCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTTC
* *
41399 AGTCCTCAAAGAGCAGGACGCTTTTCAAAG-CCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * * *
41453 AGTCCTCAAAAAGTAGGATGTCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
*
41507 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACAAGTTGGTGGCACTTTTC
*
41567 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCACTTTT-C
* *
41628 AGTCCTCAAAGAGCA-GACGCATTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
1 AGTCCTCAAAGAGCAGGACGC-----CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
41686 AGTCCTCAAAGAGCAAGACACCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGC-AG-GA----CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
41747 AGTCCTCAAAGAGCAAGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCACTTTT-C
* * * *
41808 AATCCTCAAAAAGCAGGATGTCTTTCAAAGCCCACACAAGTTGGTGGCA--TTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
41861 TAGTCCTCAAAGAGCAAGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 -AGTCCTCAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
41923 AGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
41977 TAGTCCTCAAAGAGTAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTTC
1 -AGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* * *
42034 -GTCCTCTAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
42088 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
42106 TGCACTTTAT
Statistics
Matches: 716, Mismatches: 55, Indels: 110
0.81 0.06 0.12
Matches are distributed among these distances:
53 4 0.01
54 96 0.13
55 232 0.32
56 4 0.01
57 6 0.01
58 15 0.02
59 57 0.08
60 97 0.14
61 190 0.27
62 7 0.01
65 8 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:41877 original size:115 final size:115
Alignment explanation
Indices: 41249--42105 Score: 1003
Period size: 115 Copynumber: 7.5 Consensus size: 115
41239 ACGCCTTCTC
*
41249 CTTTTAAAGCCCACACAAGTTGGTGGCACTTT-TCAGTCCTCAAAGAGCAGGACGC----C-TTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCT-AGTCCTCAAAGAGCAGGACGCTTTTCTTTT
* *
41308 CAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTCT
65 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--A---TGT
41364 CCTTTCAAAGCCCACACAAGTTGGTGGCACATTT-TAGTCCTCAAAGAGCAGGACG-----CTTT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCTAGTCCTCAAAGAGCAGGACGCTTTTCTTT
* *
41423 TCAAAG-CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGTAGGATGT
64 TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGT
*
41474 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACG-CTTTTCTTTT
41538 -AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCTTTTT
65 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATG-----T
* *
41593 CTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCA-GACGCATTTTCTTT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGC-TTTTCTTT
* *
41657 T-AAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAAGACACCTTCT
64 TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC-AG-GA---TGT
* * *
41712 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTCAGTCCTCAAAGAGCAAGATGCTTTTTCTT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCT-AGTCCTCAAAGAGCAGGACGC-TTTTCTT
* * *
41776 TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAATCCTCAAAAAGCAGGATGT
63 TTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGATGT
* *
41829 CTTTCAAAGCCCACACAAGTTGGTGGCA-TTTCTAGTCCTCAAAGAGCAAGATGCTTTTTCTTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGC-TTTTCTTTT
* ***
41893 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACAC
65 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGT
* * * *
41944 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGTAGGACAC----CTCTT-
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCTTTTCTTTTC
* * *
42004 AAAGCCCACACAAGTTGGTGGCACCTTTTC-GTCCTCTAAGAGCAGGACGC
66 AAAGCCCACACAAGTTGGTGGCACC-TTTCAGTCCTCAAAGAGCAGGATGT
* *
42054 CTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGA
42106 TGCACTTTAT
Statistics
Matches: 668, Mismatches: 41, Indels: 70
0.86 0.05 0.09
Matches are distributed among these distances:
108 23 0.03
109 28 0.04
110 92 0.14
111 8 0.01
113 5 0.01
114 47 0.07
115 138 0.21
116 113 0.17
117 6 0.01
118 3 0.00
119 63 0.09
120 85 0.13
121 43 0.06
122 13 0.02
124 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (115 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCTTTTCTTTTC
AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGT
Found at i:42178 original size:42 final size:42
Alignment explanation
Indices: 42083--42167 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
42073 TTGGTGGCAC
* * *
42083 TTTTTAGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTT
1 TTTTTCGTCCTCAAAGAGCAGGACGCAATTTATTTTCCTCTT
42125 TTTTTCGTCCTCAAAGAGCAGGACG-AATTT-TGTTTCC-CTT
1 TTTTTCGTCCTCAAAGAGCAGGACGCAATTTAT-TTTCCTCTT
42165 TTT
1 TTT
42168 CCCTTGTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
40 7 0.18
41 9 0.23
42 23 0.59
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (42 bp):
TTTTTCGTCCTCAAAGAGCAGGACGCAATTTATTTTCCTCTT
Found at i:42948 original size:19 final size:18
Alignment explanation
Indices: 42920--42982 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
42910 AAATAGAAAA
*
42920 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGT-T
42939 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
42952 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
42971 TGTATCGATACA
1 TGTATCGATACA
42983 ATGTATCGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:42957 original size:13 final size:13
Alignment explanation
Indices: 42939--42963 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42929 ACATAAGTGT
42939 TGTATCGATACAA
1 TGTATCGATACAA
42952 TGTATCGATACA
1 TGTATCGATACA
42964 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:42962 original size:32 final size:32
Alignment explanation
Indices: 42918--42990 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
42908 ACAAATAGAA
*
42918 AATGTATTGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
42950 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
42982 AATGTATCG
1 AATGTATCG
42991 CTACGAAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:43033 original size:21 final size:21
Alignment explanation
Indices: 43007--43047 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
42997 AGCTACTGCC
43007 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
43028 AAGGAAATGTATCGATACAT
1 AAGGAAATGTATCGATACAT
43048 CGATCTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.27
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:44182 original size:11 final size:11
Alignment explanation
Indices: 44166--44194 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
44156 TTTACATGTT
44166 TATCTTGATGA
1 TATCTTGATGA
44177 TATCTTGATGA
1 TATCTTGATGA
44188 TATCTTG
1 TATCTTG
44195 CCATCACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.48
Consensus pattern (11 bp):
TATCTTGATGA
Found at i:45472 original size:51 final size:51
Alignment explanation
Indices: 45416--45600 Score: 250
Period size: 51 Copynumber: 3.6 Consensus size: 51
45406 TTAAGTTTCT
* * *
45416 CAATTTTTCACAATCGGGGGTACTCCAACCCCGGTTTTATTTCTAAAACGC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* * * *
45467 TAATTTTCCACAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* *
45518 CAA-TTTTCTATAATC--GGATACTCCAACCCCGATTTTATTTCCAAAAACAC
1 CAATTTTTC-ACAATCGGGGATACTCCAACCCCGATTTTATTT-CTAAAACAC
45568 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTTCACAATCGGGGATACTCCAACCCCG
45601 TCAATCATCG
Statistics
Matches: 115, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
49 24 0.21
50 19 0.17
51 56 0.49
52 16 0.14
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
Found at i:45690 original size:79 final size:78
Alignment explanation
Indices: 45607--45789 Score: 269
Period size: 79 Copynumber: 2.3 Consensus size: 78
45597 CCCGTCAATC
*
45607 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGAATACTTCAACCCCGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGAATACTCCAACCCCGGCTTTATTTC-AAAAT
** *
45672 -ATTGATTTCTCATA
65 CATCAATTT-TCACA
* * * *
45686 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTTTATTTCCAAATC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGAATACTCCAACCCCGGCTTTATTTCAAAATC
45751 ATCAATTTTCACA
66 ATCAATTTTCACA
45764 ATCGGGGATACTCCAACCCCGTTATT
1 ATCGGGGATACTCCAACCCCGTTATT
45790 ATCTCCAAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
78 33 0.35
79 61 0.65
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGAATACTCCAACCCCGGCTTTATTTCAAAATC
ATCAATTTTCACA
Found at i:50471 original size:13 final size:13
Alignment explanation
Indices: 50453--50549 Score: 83
Period size: 13 Copynumber: 8.4 Consensus size: 13
50443 ACATTTCTTC
50453 ATGTATCGATACA
1 ATGTATCGATACA
50466 ATGTATCGATAC-
1 ATGTATCGATACA
*
50478 A--T-T-G-TACC
1 ATGTATCGATACA
50486 ATGTATCGATACA
1 ATGTATCGATACA
50499 ATGTATCGATAC-
1 ATGTATCGATACA
*
50511 A--T-T-G-TACC
1 ATGTATCGATACA
50519 ATGTATCGATACA
1 ATGTATCGATACA
50532 ATGTATCGATACA
1 ATGTATCGATACA
*
50545 TTGTA
1 ATGTA
50550 CCATGTATCG
Statistics
Matches: 69, Mismatches: 3, Indels: 24
0.72 0.03 0.25
Matches are distributed among these distances:
7 6 0.09
8 4 0.06
9 2 0.03
10 4 0.06
11 2 0.03
12 4 0.06
13 47 0.68
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:50475 original size:33 final size:33
Alignment explanation
Indices: 50433--50565 Score: 234
Period size: 33 Copynumber: 4.0 Consensus size: 33
50423 GTTACATGCT
50433 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
50466 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
50499 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
50532 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
50565 A
1 A
50566 ATAGTGATAG
Statistics
Matches: 98, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
33 96 0.98
34 1 0.01
35 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:50491 original size:20 final size:20
Alignment explanation
Indices: 50466--50564 Score: 100
Period size: 20 Copynumber: 5.7 Consensus size: 20
50456 TATCGATACA
50466 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
50486 ATGTATCGATAC-----A--
1 ATGTATCGATACATTGTACC
50499 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
50519 ATGTATCGATAC-----A--
1 ATGTATCGATACATTGTACC
50532 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
50552 ATGTATCGATACA
1 ATGTATCGATACA
50565 AATAGTGATA
Statistics
Matches: 65, Mismatches: 0, Indels: 28
0.70 0.00 0.30
Matches are distributed among these distances:
13 24 0.37
15 2 0.03
18 2 0.03
20 37 0.57
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:50634 original size:13 final size:13
Alignment explanation
Indices: 50616--50681 Score: 132
Period size: 13 Copynumber: 5.1 Consensus size: 13
50606 CAATTTGGCC
50616 ATGTATCGATACA
1 ATGTATCGATACA
50629 ATGTATCGATACA
1 ATGTATCGATACA
50642 ATGTATCGATACA
1 ATGTATCGATACA
50655 ATGTATCGATACA
1 ATGTATCGATACA
50668 ATGTATCGATACA
1 ATGTATCGATACA
50681 A
1 A
50682 AGCAGCATGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 53 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:50700 original size:33 final size:33
Alignment explanation
Indices: 50595--50672 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 33
50585 TGCCAGTTTC
*
50595 ATGTATCGATACAATT-TGGCCATGTATCGATACA
1 ATGTATCGATAC-ATTGT-ACCATGTATCGATACA
50629 ATGTATCGATAC-----A--ATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
*
50655 ATGTATCGATACAATGTA
1 ATGTATCGATACATTGTA
50673 TCGATACAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
26 25 0.66
31 1 0.03
34 12 0.32
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:51102 original size:19 final size:19
Alignment explanation
Indices: 51056--51127 Score: 110
Period size: 19 Copynumber: 3.7 Consensus size: 19
51046 TTACAAGCCA
51056 ATGTATCGATACAT-TTGAT
1 ATGTATCGATACATCTTG-T
51075 CATTGTATCGATACATCTTGT
1 -A-TGTATCGATACATCTTGT
51096 ATGTATCGATACATCTTGT
1 ATGTATCGATACATCTTGT
51115 ATGTATCGATACA
1 ATGTATCGATACA
51128 AACAGTTAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
19 31 0.62
20 2 0.04
21 14 0.28
22 3 0.06
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (19 bp):
ATGTATCGATACATCTTGT
Found at i:51215 original size:13 final size:13
Alignment explanation
Indices: 51197--51221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51187 TACAGTGGTC
51197 ATGTATCGATACA
1 ATGTATCGATACA
51210 ATGTATCGATAC
1 ATGTATCGATAC
51222 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:51239 original size:33 final size:32
Alignment explanation
Indices: 51180--51242 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
51170 ATCTTTGCAA
*
51180 GTATCGATACAGTGGTCATGTATCGATACAAT
1 GTATCGATACAGTGATCATGTATCGATACAAT
* *
51212 GTATCGATACTGTGCATTATGTATCGATACA
1 GTATCGATACAGTG-ATCATGTATCGATACA
51243 TCTGAAGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (32 bp):
GTATCGATACAGTGATCATGTATCGATACAAT
Found at i:56307 original size:477 final size:477
Alignment explanation
Indices: 54999--56335 Score: 1945
Period size: 475 Copynumber: 2.8 Consensus size: 477
54989 GTTGTCATCA
* * * *
54999 ATTACTGGAATCCTTATTTGTCTCATTTAAGGCATGAACTTAGAGTTTACAAAAATTGGTAGGAA
1 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGT-GGAA
* ** * * * * * * *
55064 GAAA-GGTTTTCTTGTGAAACCAAAGAATTAATATGATGTACCCTAATGAGAAGACTACGTTTCT
65 AAAATGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * *
55128 GGTGCCCAATCCTGAAAAGAACAT-GGATTAGTTTGAGTATTCATGTTTGTCGTATTTAAGAGAC
130 GGTGCCGAATCCTGAAAAGAACATGGGATTAGTATGAGTATTCTTGTTTATCGTATTTAAGAGAC
* * * * * *
55192 AAACTTTGATTCTATCAAAAATTA-TGGAAAGAAAAGTTTTTCTTGTGACACCAAAGCATCAGTA
195 AAACTTTGATTCTATCAAAAA-CAGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAATG
** * * * *
55256 TCATGTATCCTAAAAAAGGGAATTTGTTTTTGTCTTTCTAGTCTTGAAAAGAATGAAGACTATTA
259 TCATGTATCCTAATGAAGGGAATATGTTTTTGGCTTTCTAGTCTTGAAAAGAATGGAGACTGTTA
** *
55321 TGAGAATCGATG-TTCGTCTTATTTATGGTATGAAC-TTAGATTTAAAGGAAAATAGGGCAAAGA
324 CAAGAATCGATGCTT-GTCTTATTTATGGTATGAACTTTA-ATTTAAAGGAAAATAGGGCAAATA
*
55384 AAAGATTTCAATGCAAAAGGAAATCATCAAAATCATTTATCCTAGTAGAAGAATGTGCTTATAGT
387 AAAGATTTCAATGCAAAAGAAAATCATCAAAATCATTTATCCTAGTAGAAGAATGTGCTTATAGT
*
55449 GCCTAATCCCAAAATGAGTGAAGATC
452 GCATAATCCCAAAATGAGTGAAGATC
* * *
55475 ATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
1 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAA
* * * *
55540 AAATGCCTTTCTT-ACGAAA-TAAAGCATCAATAGCATGTATCCTTATGAGAAGACTATGTTTGT
66 AAATGCCTTTCTTGA-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
*
55603 GGTGCCGAATTCTGAAAAGAACA-GGGATTAGTATGAGTATTCTTGTTTATCGTATTTAAGAGAC
130 GGTGCCGAATCCTGAAAAGAACATGGGATTAGTATGAGTATTCTTGTTTATCGTATTTAAGAGAC
* * *
55667 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAGAGCTTCTCTCGCGACACCAAAGCATCAATGC
195 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAATGT
*
55732 CATGTATCCTAATGAAGGGAATATGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTAC
260 CATGTATCCTAATGAAGGGAATATGTTTTTGGCTTTCTAGTCTTGAAAAGAATGGAGACTGTTAC
* * *
55797 AAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTAATTTAAAGGAAAATAGGGCAAATAAAG
325 AAGAATCGATGCTTGTCTTATTTATGGTATGAACTTTAATTTAAAGGAAAATAGGGCAAATAAAA
* *
55862 GATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAGTAGGAGAATGTGCTTATAGTGCA
390 GATTTCAATGCAAAAGAAAATCATCAAAATCATTTATCCTAGTAGAAGAATGTGCTTATAGTGCA
*
55927 TAATCCCAAAATGAGTGAAGATG
455 TAATCCCAAAATGAGTGAAGATC
* * *
55950 ATTACTAGAATCCATGTTTGTTTCAATTAAGGCATGAACTTAGACTTTACGAAAATTGGTGGAAA
1 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAA
* **
56015 AAATGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTGTCCTAAAAAGAAGACTATGTTTATG
66 AAATGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
56080 GTGTCGAATCCTGAAAA-AAAATGGGGATTAGTATGAGTATTCTTGTTTATCGTATTTAAGAGAC
131 GTGCCGAATCCTGAAAAGAACAT-GGGATTAGTATGAGTATTCTTGTTTATCGTATTTAAGAGAC
* *
56144 AAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTCGCAACACCAAAGCATCAATGT
195 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAATGT
* * *
56209 CGTGTATCCTAATGAAGGGAATGTCTTTTTGGCTTTCTAGTCTTGAAAAGAATGGAGACTGTTAC
260 CATGTATCCTAATGAAGGGAATATGTTTTTGGCTTTCTAGTCTTGAAAAGAATGGAGACTGTTAC
* *
56274 AAGAATCGATGCTTGTCGTATTTATGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAATA
325 AAGAATCGATGCTTGTCTTATTTATGGTATGAACTTTAATTTAAAGGAAAATAGGGCAAATA
56336 TAGAATGGCG
Statistics
Matches: 770, Mismatches: 81, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
474 1 0.00
475 425 0.55
476 124 0.16
477 220 0.29
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAA
AAATGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
GTGCCGAATCCTGAAAAGAACATGGGATTAGTATGAGTATTCTTGTTTATCGTATTTAAGAGACA
AACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAATGTC
ATGTATCCTAATGAAGGGAATATGTTTTTGGCTTTCTAGTCTTGAAAAGAATGGAGACTGTTACA
AGAATCGATGCTTGTCTTATTTATGGTATGAACTTTAATTTAAAGGAAAATAGGGCAAATAAAAG
ATTTCAATGCAAAAGAAAATCATCAAAATCATTTATCCTAGTAGAAGAATGTGCTTATAGTGCAT
AATCCCAAAATGAGTGAAGATC
Found at i:56527 original size:205 final size:204
Alignment explanation
Indices: 56141--56538 Score: 591
Period size: 205 Copynumber: 1.9 Consensus size: 204
56131 GTATTTAAGA
* * *
56141 GACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTCGCAACACCAAAGCATCAA
1 GACAAAATTTGATTCCATCAAAAACAGGGGAAAGAAAAGCTTTTCTCACAACACCAAAGCATCAA
* * * * * *
56206 TGTCGTGTATCCTAATGAAGGGAATGTCTTTTTGGCTTTCTAGTCTTGAAAAGAATGGAGACTGT
66 TGTCATGTATCCTAATGAAAGGAATGTATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * * *
56271 TACAAGAATCGATGCTTGTCGTATTTATGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAATA
131 TACAAGAATCAATGCTTATCGTATTTAAGGTATGAACCTTGATTTAAAGGAAAATAGGGCAAATA
56336 TAGAATGGC
196 TAGAATGGC
* * **
56345 GACAAAATTTGATTCTATCAAAAA-TGGGGAAAAGAAAAGCTTTTCTCATGACACCAAAGCATCA
1 GACAAAATTTGATTCCATCAAAAACAGGGG-AAAGAAAAGCTTTTCTCACAACACCAAAGCATCA
56409 ATGTCATGTATCCTAAATGAAAGGAATGTATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
65 ATGTCATGTATCCT-AATGAAAGGAATGTATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
** *
56474 ATTACGGGAATCAATGCTTATCTTATTTAAGGTATGAACCTTGATTTAAAGGAAAATAGGGCAAA
129 ATTACAAGAATCAATGCTTATCGTATTTAAGGTATGAACCTTGATTTAAAGGAAAATAGGGCAAA
56539 GAAAGGATTT
Statistics
Matches: 172, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
203 3 0.02
204 66 0.38
205 103 0.60
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (204 bp):
GACAAAATTTGATTCCATCAAAAACAGGGGAAAGAAAAGCTTTTCTCACAACACCAAAGCATCAA
TGTCATGTATCCTAATGAAAGGAATGTATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
TACAAGAATCAATGCTTATCGTATTTAAGGTATGAACCTTGATTTAAAGGAAAATAGGGCAAATA
TAGAATGGC
Found at i:56994 original size:679 final size:680
Alignment explanation
Indices: 55664--57012 Score: 1812
Period size: 679 Copynumber: 2.0 Consensus size: 680
55654 GTATTTAAGA
* * * *
55664 GACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAGAGCTTCTCTCGCGACACCAAAGCATCAA
1 GACAAAATTTGATTCTATCAAAAACAGGGGAAAGAAAAGCTTCTCTCACGACACCAAAGCATCAA
* * * *
55729 TGCCATGTATCCTAATGAAGGGAATATGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGT
66 TGCCATGTATCCTAATGAAAGGAATATATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * * *
55794 TACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTAATTTAAAGGAAAATAGGGCAAATA
131 TACAAGAATCAATGCTTACCTTATTTAAGGTATGAACCTTAATTTAAAGGAAAATAGGGCAAAGA
* * * * * *
55859 AAGGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAGTAGGAGAATGTGCTTATAGT
196 AAGGATTTACAGGCAAAAGAAAATCATCAAAATCATTTATCCTAG-ACGAGAACGAGCTTACAGT
* * * * *** *
55924 GCATAATCCCAAAATGAGTGAAGATGATTACTAGAATCCATGTTTGTTTCAATTAAGGCATGAAC
260 GCATAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTAAATCAATTAAGGCACGAAC
* *
55989 TTAGACTTTACGAAAATTGGTGGAAAAAATGCCTTTCTTGAGAAACCAAAGCATCAATATCATGT
325 TTAGACTTTACAAAAATTGGTGGAAAAAATACCTTTCTTGAGAAACCAAAGCATCAATATCATGT
* * * *
56054 GTCCTAAAAAGAAGACTATGTTTATGGTGTCGAATCCTGAAAAAAAATGGGGATTAGTATGAGTA
390 ATCCTAAAAAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAAAAATGCGAATTAGTATGAGTA
* * *
56119 TTCTTGTTTATCGTATTTAAGAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTT
455 TTCATGTTTATCGTATTTAAGAGAAAAACATTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * *
56184 TCTCGCAACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGAATGTCTTTTTGGCTTTCTAG
520 TCTCGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTCTTTTTGGCTTCCGAG
* * * *
56249 TCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCGTATTTATGGTATGAACTTTGAT
585 TCTTGAAAAGAATGAAGACTGTTACAAGAATCGATGCTTGTCGTATTTAAGGTACGAACATTGAT
56314 TTAAAGGAAAATAGGGCAAATATAGAATGGC
650 TTAAAGGAAAATAGGGCAAATATAGAATGGC
* * *
56345 GACAAAATTTGATTCTATCAAAAA-TGGGGAAAAGAAAAGCTTTTCTCATGACACCAAAGCATCA
1 GACAAAATTTGATTCTATCAAAAACAGGGG-AAAGAAAAGCTTCTCTCACGACACCAAAGCATCA
* *
56409 ATGTCATGTATCCTAAATGAAAGGAATGTATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
65 ATGCCATGTATCCT-AATGAAAGGAATATATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
** * *
56474 ATTACGGGAATCAATGCTTATCTTATTTAAGGTATGAACCTTGATTTAAAGGAAAATAGGGCAAA
129 ATTACAAGAATCAATGCTTACCTTATTTAAGGTATGAACCTTAATTTAAAGGAAAATAGGGCAAA
* * * *
56539 GAAAGGATTTACAGGTAGAAGAAAATCATCAATATCATTTATCCTA-ACGAGGAACGAGTTTACA
194 GAAAGGATTTACAGGCAAAAGAAAATCATCAAAATCATTTATCCTAGACGA-GAACGAGCTTACA
* * * * * * * *
56603 TTGCCTAATCAGAAAAAGAATGAAGATCTTTACTAGAATCCATGTTTAAATCATTTGAGGCGCGG
258 GTGCATAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTAAATCAATTAAGGCACGA
* * * **
56668 ACTTAGATTTTACAAAAATTGGTGG-GAAAATACCTTTCTTGCGAAACCAAATTATCAATATCAT
323 ACTTAGACTTTACAAAAATTGGTGGAAAAAATACCTTTCTTGAGAAACCAAAGCATCAATATCAT
* ** * **
56732 GTATGCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAGGATGCGAATTAGTATGAG
388 GTATCCTAAAAAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAAAAATGCGAATTAGTATGAG
* * * * *
56796 TATTCATGTTTGTCGTATTTAAGCA-AAAAACATTGATTCTATCAAAATCGGTGGAATGAAAAGC
453 TATTCATGTTTATCGTATTTAAG-AGAAAAACATTGATTCCATCAAAAACAGTGGAAAGAAAAGC
* * *
56860 TTTTCGT-GCAACTCCAAAGCATCAATGTCATGTTTCCTAATAAAAGGAATGTGTTTTTGGCTTC
517 TTTTC-TCGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTCTTTTTGGCTTC
* *
56924 CGAGTCTTGAAAAGAATGAAGATTGTTA-AGAGAATCGATGCTTGTCTTATTTAAGGTACGAACA
581 CGAGTCTTGAAAAGAATGAAGACTGTTACA-AGAATCGATGCTTGTCGTATTTAAGGTACGAACA
56988 TTGATTTAAAGGAAAATAGGGCAAA
645 TTGATTTAAAGGAAAATAGGGCAAA
57013 GAAAAGATTT
Statistics
Matches: 576, Mismatches: 86, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
678 1 0.00
679 208 0.36
680 77 0.13
681 147 0.26
682 143 0.25
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (680 bp):
GACAAAATTTGATTCTATCAAAAACAGGGGAAAGAAAAGCTTCTCTCACGACACCAAAGCATCAA
TGCCATGTATCCTAATGAAAGGAATATATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
TACAAGAATCAATGCTTACCTTATTTAAGGTATGAACCTTAATTTAAAGGAAAATAGGGCAAAGA
AAGGATTTACAGGCAAAAGAAAATCATCAAAATCATTTATCCTAGACGAGAACGAGCTTACAGTG
CATAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTAAATCAATTAAGGCACGAACT
TAGACTTTACAAAAATTGGTGGAAAAAATACCTTTCTTGAGAAACCAAAGCATCAATATCATGTA
TCCTAAAAAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAAAAATGCGAATTAGTATGAGTAT
TCATGTTTATCGTATTTAAGAGAAAAACATTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTT
CTCGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTCTTTTTGGCTTCCGAGT
CTTGAAAAGAATGAAGACTGTTACAAGAATCGATGCTTGTCGTATTTAAGGTACGAACATTGATT
TAAAGGAAAATAGGGCAAATATAGAATGGC
Found at i:57448 original size:477 final size:477
Alignment explanation
Indices: 56345--72184 Score: 5390
Period size: 477 Copynumber: 33.4 Consensus size: 477
56335 ATAGAATGGC
* * *
56345 GACAAAATTTGATTCTATCAAAAATGG-GGAAAAGAAAAGCTTTTCTCATGACACCAAAGCATCA
1 GACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTCGTGACACCAAAGCATCA
*
56409 ATGTCATGTATCCTAAATGAAAGGAATGTATTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
65 ATGTCATGTATCCT-AATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
* * * *
56474 ATTACGGGAATCAATGCTTATCTTATTTAAGGTATGAACCTTGATTTAAAGGAAAATAGGGCAAA
129 ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAA
* * * * * * * * *
56539 GAAAGGATTTACAGGTAGAAGAAAATCATCAATATCATTTATCCTAACGA-G-GAACGAGTTTAC
194 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * *** *
56602 ATTGCCTAATCAGAAAAAGAATGAAGATCTTTACTAGAATCCATGTTTAAATCATTTGAGGCGCG
259 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * ** *
56667 GACTTAGATTTTACAAAAATTGGTGGGAAAATA-CCTTTCTTGCGAAACCAAATTATCAATATCA
324 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGA
* * * * *
56731 TGTATGCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATGCGAATTAGTATGAG
389 TGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
*
56796 TATTCATGTTTGTCGTATTTAAGCA
454 TATTCATGTTTGTCATATTTAAG-A
* * * * *
56821 -AAAAACATTGATTCTATCAAAATCGGTGGAATGAAAAGC-TTT-TCGTGCAACTCCAAAGCATC
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAGCATC
* * * * *
56883 AATGTCATGTTTCCTAATAAAAGGAATGTGTTTTTGGCTTCCGAGTCTTGAAAAGAATGAAGATT
64 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
* * * *
56948 GTTAAGAGAATCGATGCTTGTCTTATTTAAGGTACGAACATTGATTTAAAGGAAAATAGGGCAAA
129 ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAA
* *
57013 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTTTAC
194 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* *
57078 AGTGCCT-ATCACAAAATAAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
259 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
** * * *
57142 AACTTAGGTTTTACAAAACA-TGGTGGGAAAAAAAGCCTTTCATGTGAAACTAAAGCATCAATAT
324 AACTTAGACTTTACAAAA-ATTGGTGGG-AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
57206 GATATATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGCATTAGTTTG
387 GATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
57271 AGTATTCATGTTTGTCATATTTAAGA
452 AGTATTCATGTTTGTCATATTTAAGA
* *
57297 GACAAACTTTGATTCTACCAAAAACGGTAGAAAG-AAAGCTTTTCTCGTGACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
** * * *
57361 CATCTTGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAGTGGAGACTAT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * **
57426 TACGAGAATCGATGCTTTGTCTTATTTAAGGTACGGACTTTGATTTAAAGGAAAATACTGCAAAG
131 TACGAGAATCGATGC-TTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * * *
57491 AAAAGATTTTCATGCAAAAAAAAATCATCAATATC-TCTTAACTTCA-GAAGGAGAATGTGTTTA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT-TTATCCTAATG-AGGAGAATGTGTTTA
* * *
57554 TAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTAT
258 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * ** *
57619 GAACATAGACTTTACAAAAATTGGAGGGAAAAATGTCTTTCTTGCAAAAGGAGAGCATCAACT-T
323 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA-TAT
* * ** * **
57683 CATGTATCCTAATGAGAAGACCGTGTTTATAGTGCCTAATCCTGAAAAGAACAGGGATTAGTATG
387 GATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
57748 AGTATTCATGTTTGTCATATTTAAGA
452 AGTATTCATGTTTGTCATATTTAAGA
** * * *
57774 GACAAACTTTGATTCTATCAAAAACGACGGAAAGAAAGGCTTTTCTTGTTACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * ** * *
57839 TATCATGTATCGTAATGATGGGAATTTGTTTTTGGCTT-CCAGTCTTGAAAAGAAGGGAGAC-AG
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTA-
* * *
57902 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTTATTTAAAGGAAAAGAGGGTAAAG
130 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * *
57967 AAAAGATTTCCACGCAAAAGAAAATCAACAATATCACTTATCCTTATGAGGAGAATGTGTTTATA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
** * * *
58032 GTATCTAATCACAAAATGAATGAAGATCTTTACTAGAATCTAGGTTTGTCTCATTTGAGGCACGA
260 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *
58097 ACTTAGACTTTACAAAAATTGGTGAGATAAAAAAGCCTTTCTTGC-AAACCCAAAGCCTCAATAT
325 ACTTAGACTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATAT
* * * *
58161 GATATATCCTAAGGAGAAGACTATGTTTACGGTGCCTAATCCCGAAAAGAATGGGGATTAGAATG
387 GATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
*
58226 AGTATTCATGTTTGTCGTATTTAAGA
452 AGTATTCATGTTTGTCATATTTAAGA
* *
58252 GACAAACTTTGGTTCTATCAAAAACAGG-GGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCA
1 GACAAACTTTGATTCTATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCA
* * *
58316 ATGTCATGTATCCTAGTCAAAGGAATGTGTTTTTGGCTTCTCAGTCTTGAAAAGAATGGAGACTA
65 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTA
* * * *
58381 TTACGAGAATCGGTGCTAGTCATATTTATGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
130 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * *
58446 AAAGGATTTTCATGCAAAAGAAAATCTTCAATATCATTTATTCTAATGAGGAGAATGTGTTTATA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
58511 GTGTCTAATCACCAAATGAATGAAGATC-TGTACTAGAATCCATGTTTGTCTCATTTAAGGCACG
260 GTGCCTAATCACAAAATGAATGAAGATCAT-TACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * *
58575 AACTTAGACTTTACAAAAATTGGAGGGAGAAAAGCCTTTCTTGTGAAACCAAAGCATTAATATGA
324 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGA
* * * * * *
58640 TGTACCCTAATGAGAAGACTATGATTCTGGTCCCTAATCCTGAAAAGAACGGGGATTAGTATGAG
389 TGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
*
58705 TATTCATGTTTGTCATGTTTAAGA
454 TATTCATGTTTGTCATATTTAAGA
* * * * ** * *
58729 GACAAACTTTGATTCTACCAAAAATGGTAGAAAGAAAAGCTATTCTCACGGCACCAAAGCACCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * * * *
58794 CGTCTTGTATCCTAAAGAACGG-ATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAGTGGAGACTGT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * * *
58858 TACGAGAATCAATGTTTTGTCTTATTTAAGGTACGAACTTTGATTTAAAGGAAAATAGTGCAAAG
131 TACGAGAATCGATG-CTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * *
58923 AAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
58988 GTGCCTAATCACAAAATGAATGAAGATCATTACTA-AA---ATGTTTGTCTCATTTGAGTCACAA
260 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * *
59049 ACTTCGACTCTACAAAAATTGGTAGGAAGAAAGCTTTTCTTGCGAAACCGAAGCATCAATATGAT
325 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
** * *
59114 GTATCCT-AGTGAGAAGACTATGTTTACAGTGTCTAATCCCGAAAAGAATGGGGATTAGTATGAG
390 GTATCCTAAG-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * *
59178 TATTCATGCTTATCGTATTTAAGA
454 TATTCATGTTTGTCATATTTAAGA
**** ** * *
59202 GACAAACTTTGATT-TATCAAAAACAACAGAAAGAAAAGCTTTTCTTATTACGCCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * ** * * * *
59266 TATCATGTATCGTCATGATGGGAATTTGTTTCTGGCTTCCTAGTCTTGAAAAGAA-GGTAGACTG
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGG-AGACTA
* * * *
59330 TCACGAGAATCGATGCCTGTCTTATTTAAGGTATGAACTTTGTTTTAAAGGAAAAAAGGGCAAAG
130 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * * *
59395 AAAAGATTTCTAGGCAAAAAAAAATCATCAATATCATTTAACCTCATGAGGAGAATGTGTTTATA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
59460 GTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAA
260 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
59525 ACTTCGACTCTACAAAAATTGGTAGGAAGAAAGCTTTTCTTGCGAAACCAAAGCATCAATATGAT
325 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
* ** ** **
59590 GTATCCTAATGAGAAGACTATGTTTACAGTGCCTAATCCCAAAAAGAATGGGGATTAAAATGAGT
390 GTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* *
59655 ATTCATGTTTATCGTATTTAAGA
455 ATTCATGTTTGTCATATTTAAGA
* * * * *
59678 GACAGACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCGCGCGTCACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* *
59743 TGTCATGTATCCTACTGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATAGAGACTAT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * * * *
59808 TGCGAGAATCGATACTAGTCATATTTAAGGTATGAACTTTGATATAAAGGAAAATAGGGCAAAGA
131 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
* * * *
59873 AAGGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATTCTAATGAGAAGAATGTGTTTATAG
196 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * *
59938 TACCT-ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACAAA
261 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * *
60002 CTTAGACTTTACATAAACTGGTGAGAAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAT
326 CTTAGACTTTACAAAAATTGGTG-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
* * * **
60067 ATATCCTAAGGAGAAGGCTATGTTTATGGTGCATAATCCTGAAAAGAATGGGCTTTAGTATGAGT
390 GTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
60132 ATTCATGTTTGTCATATTTAAGA
455 ATTCATGTTTGTCATATTTAAGA
* * ** * * *
60155 GACAAACTCTGATTCTACCGGAAATGGTGGAAAGAAAAGCTTTTCTCATGACACCAAAGCGTCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * *
60220 TGTCTTGTATCC---T---A--AA---G--CTT---TTCCCAGTCATGAAAAGAGA-GGAGACTG
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGA-ATGGAGACTA
** ** * * * * ** * **
60268 TTATAAGAATCGTAT--TTAG--GAAATT--GG--TG-AGTATTCATGTTCATCGTATTTA--G-
130 TTACGAGAATCG-ATGCTT-GTCTTATTTAAGGTATGAACT-TTGAT-TTAAAGGAAAATAGGGC
* * * * * * * * * * *
60321 ---GAAAAGCTTTTCTTGTTACAA-CAAAGCATCAATATCATGTATCGTTATGATGG-GAATTTG
191 AAAGAAAAGATTTCCATG-CAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTG
* * * * * ** * * * * * *
60381 TTTTTGGCTTCCCAGTCTTGAAAA-GAAGGGAGA-C-TGTCACGAGAATCGATGCTTGTCTTATT
254 TTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCAT-T-ACTAGAATCCATGTTTGTCTCATT
* * * * ** * * ** * **
60443 TAACGTATGAACTTTTA-TTTA-AAGGAAA-AGG-GGGTAAAGAAAAG-ATTTCCAAGCAAAAGA
315 TGAGGCACGAACTTAGACTTTACAA--AAATTGGTGGG--AA-AAAAGCCTTT-CTTGCGAAACC
* * * * * * * * * * * *
60503 AAATCGTCAATATCATTTATCCTTATGAGGAGAATGTGCTTATAGTACCTAATCAC--AAAATGA
374 AAAGCATCAATATGATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GA
* * * * * *
60566 ATGGAGATCATTACT-AGAATCCAAGTTTGTC-TCATTTAAG-
437 ATGGGGATTAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGA
* * ** * * * * *
60606 GCACGATCTGAGACTT-TA-CAAAAATTGGTGAGAAA-AAAAGCCTTTCTTGCGAAACCAAAGCA
1 G-ACAAACTTTGA-TTCTATCAAAAA-CGGTG-GAAAGAAAAGCTTTTCTCGTGACACCAAAGCA
* * * * * * * * * * *
60668 TCCAT-ACGATATAT-CTAAACGAGAA-GACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGG
62 TCAATGTC-ATGTATCCT-AATGA-AAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGG
* * * * * * ** * **
60729 -GAATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGAG-ACAAACTCTGATTCT-ATCGAAAA
124 AG-ACTATTACGAG-AATCGATGCTTGTCTTATTTAAG-GTATGAACTTTGATT-TAAAGGAAAA
* * * * * ** * * * *
60790 -CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAGCGTTAATGTC-TTGTATCCTAATGAAG
185 TAGG-GCAAAGAAAAG-ATTTC-CATGCAAAAGAAAATCATCAATATCATT-TATCCTAATG-AG
* * * * ** ** * * * ** *
60851 G-GAATGTGTTTTTGGCTTCCCAGCCTTGAAAA-GAGTGGAGA-CTGTTA-TGAGAATTGATGCT
245 GAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGATC-ATTACT-AGAATCCATGTT
* ** * * * * ** ** *
60912 TGTCAT-ATTT-AGGGTAAAAACTTTGA-TTTA-AAGGAAAATAGAGCAAAGAAAAGATTTTCAT
306 TGTC-TCATTTGA-GGCACGAACTTAGACTTTACAA--AAATTGGTGGGAA-AAAAGCCTTTCTT
* ** * * * * * * * * *
60973 GCAAAAGAAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCTAATCAC-
366 GCGAAACCAAAGCATCAATATGATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATC-CT
** * * *
61037 -AAAATGAATGAAGATCT-TTACT-AGAATCCATGTTTGTC-TCATTTAACG-
430 GAAAA-GAATGGGGAT-TAGTA-TGAGTATTCATGTTTGTCAT-ATTTAA-GA
* * * * * * * *
61085 CACGAACTTAGACTT-TA-CAAAAATTGGTGG-GA-AAAAGCCTTTCTTGTGAAACCAAAGCATC
1 GACAAACTTTGA-TTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATC
* * * * * * * * * * * * * * *
61146 GATATGATGTACCCTAATGAGAAGG-CTATGATTCTGG-TGCCTAATCCTGAAAAAAATGGGGAT
64 AATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGAC
* * * * ** * * *
61209 TAGTATGAGTATTC-ATG-TTAGT-TGTACTTAAGAG-ACAAACATTGATTCTATCA--AAAATG
128 TATTACGAG-AATCGATGCTT-GTCT-TATTTAAG-GTATGAACTTTGATT-TA-AAGGAAAATA
* * * ** * * * *
61268 GGGGAAA-AAAAGCATTTCTA-GCAACACCAAAGCATCAATGTCACGTT-TCTTAATGAAGG-GA
187 GGGCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCA-TTTATCCTAATG-AGGAGA
* ** * * * *
61329 ATGTGATTT-TGGCTTACTAGTCTTGAAAAGAATGGAGACTATTACACCAAAGAATGGGCATTAG
249 ATGTG-TTTATAG-TGCCTAATC---ACAA-AAT---GA--A-T-----GAAG-AT---CATTAC
* * * *
61393 TATGAGCATTCATGTTTGTCAT-ATTTAAGAG-ACAAACTCT-GA-TTCTATCAAAAAAT-GTGG
293 TA-GA--ATCCATGTTTGTC-TCATTTGAG-GCACGAACT-TAGACTT-TA-CAAAAATTGGTGG
* * * * * * ** ** * * * *
61453 AAAGAAAAGCTTTTCTCGTGACACCAAAGCGTCAACGTCTTGTATCCTAATGA-AGGGAATGTGT
350 GAA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAGGAGA-AGACTATGT
* * * * * * ** * * * * *
61517 TTTTGGCTTCCCAGTCATGAAAAGAGTGGACACT-GTTATGAGAATTGATGCTTGTCTTATTTAA
413 TTATGG-TGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCATATTTAA
61581 GA
476 GA
* * * * * * * * * ** *
61583 TACGAACTTTGATT-TA-AAGGAAAATAGG-GCAAAGAATAG-ATTTC-CATGCAAAAGAAAATC
1 GACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAGC
* * * * * * * * * * * ** * *
61643 ATCAATATCATTTAACCTCA-GGAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAAAGA
61 ATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGG
* * * * * * * ** * * * *
61705 AGA-TCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTCGACTCTACA--AAAATT
124 AGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAATA
* * * ** ** * * * * *
61767 GGTAG-GAAG-AAAGCCTTT-CTTGTGAAACCAAAGCATCAATATGATGTATCCTAACGAGAAGA
187 GG--GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * ** * ** * * * * * *
61829 CTATGTTTA-CGATGTTTTATC-CTGAAAA-GAATGGGGATTA-GAATGAGTATTCATGTTTCTC
249 ATGTGTTTATAG-TGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC
* * * * * * * ** *
61890 GT-ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CGGCGGAAAGAAAAGCTTTTCTCACCA
310 -TCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGA
* * * * * * * * * *
61951 CACCGAAGCGTCAATGTCATGTATCCT-AGTGA-AAGGAATATGTTTTTGGCTTCCCAATCTTGA
370 AACCAAAGCATCAATATGATGTATCCTAAG-GAGAA-GACTATGTTTATGG-TGCCTAATCCTGA
* * * * * *
62014 AAAGAGTGGAGACT-GTTATGAG-AATCGATGCTTTATCTTATTTAAG-
432 AAAGAATGGGGATTAG-TATGAGTATTC-ATG-TTTGTCATATTTAAGA
** * ** * * * * * ** *
62060 GTATGAACTTTGATT-TA-AAGGAAAATAGCGCAAAGAAAAG-ATTTC-CATGCAAAAGAAAATC
1 G-ACAAACTTTGATTCTATCA--AAAACGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAGC
* * * * * * * * * * * **
62121 ACCAAAT-TCATTTAACCTTA-GGAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATG
61 ATC-AATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATG
* * * * * * * * **
62182 AAGATCT-TTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTGCA--AAAAT
123 GAGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAAT
* * * * ** ** * * * *
62244 TGGTGGAAA-AAAAGGCTTT-CTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
186 AGG-GCAAAGAAAA-GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* ** * * * * * * * * * *
62307 CTACGATTCTGGTGCCTAATC-CAGAAAAGAAT-AGGGATTAGTA-TGAGTATTCATGTTAGT-T
249 ATGTGTTTATAGTGCCTAATCACA-AAATGAATGA-AGATCATTACT-AGAATCCATGTTTGTCT
* * * * * * * * *
62368 GTACTT-AAG-A-G-AC----ACTAT-C-AAAA-TGATGGAAAGAAAAGCATTTCTTGTGACACC
311 -CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACC
* * * * * * * *
62422 AAAGCATCAATGTCACGTATTCTAA--AGAAGGGAATGTGTTCT-TGGCTTG-CTAGTCTTGAAA
374 AAAGCATCAATATGATGTATCCTAAGGAGAA--GACTATGTT-TATGG--TGCCTAATCCTGAAA
* ** * * *
62483 AGAATGGAGATT-GTTACCAG-AATCGATGCTTGTCTTATTTAAGA
434 AGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA
* * * * * * * * ** **
62527 TACGAACTTTGATT-TA-AAGGAAAATAGG-GCAAAG-AAAG-ATTTC-CATGCAAAAGAAAATT
1 GACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAGC
* * * * * * * * ** * *
62586 ATCAATATCATTTATCCTAATTG-GA-GAATGTGATTATAG-TGCCTAAACAT-AAAATGAATGA
61 ATCAATGTCATGTATCCTAA-TGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGG
* * * * * ** * **
62647 AGA-TCATTACTG-GAATCCATGTTTGTCTCATTTGAGGCAAAAACTTAGACTTTCCA--AAAAT
124 AGACT-ATTAC-GAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAAT
* ** * * * ** * * * *
62708 TGGTGGGAA-TAAAGCCTTT-CTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
186 AGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * ** * * * *
62771 CTATGTTTATAGTGCCTAATC-CTGAAAA-GAACGGGGATTAGTA-TGAGTATTCATGTTTGTCA
249 ATGTGTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-
* * ** * *
62833 T-ATTT-AGGAGACAAACTTTTA-TTCTATCAAAAA-TGG-GGGAAAGAAAAG-CTTATCTCGTG
310 TCATTTGAGG-CACGAACTTAGACTT-TA-CAAAAATTGGTGGG-AA-AAAAGCCTT-TCTTGCG
* * * * * * * * * *
62892 ACACCAAAGCATCAATGTCG-TGTAACCT-AGTGA-AAGGAATGTGTTTTTGGCTTCCCAGTCTT
369 AAACCAAAGCATCAATAT-GATGTATCCTAAG-GAGAA-GACTATGTTTATGG-TGCCTAATCCT
* * * * * * * * * *
62954 GAAAATAGTGGAGACTA-T-TGCGGCAATCGATGCTAGCCATATTTAAG-
430 GAAAAGAATGGGGATTAGTATG-AGTATTC-ATGTTTGTCATATTTAAGA
** * * * * * * ** *
63001 GTATGAACTTTGATT-TA-AAGGAAAATAGG-GCAAAGAAAAG-ATTTC-CATGCAAAAAAAAAT
1 G-ACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAG
* * * * * * * * * ** *
63061 CATCAATATCATTTGTTCTAATG-AGGAGAATGTGTTTATAG-TGCCTA-TC-ACAAAATGACT-
60 CATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATG
* * * * * * * * * * * *
63121 GAAAATCATTACTAGAATCCAGGTTTGTCTCATTTGAGGCACGAACTTAGATTTTACA--AAAAT
123 GAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAAT
* * * * ** ** * * * * *
63184 TGGTG--AGGAAAA-ATGCCTTTCTTGTGAAA-CCAATGCATCAATATGATATATCCCAAGGAGA
186 AGG-GCAAAGAAAAGAT---TTCCATGCAAAAGAAAAT-CATCAATATCATTTATCCTAATGAGG
* * * * * * * *
63245 AGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAAT-AGGGATTAGTA-TGAGTATTCATGTTT
246 AGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATGA-AGATCATTACT-AGAATCCATGTTT
* * * * * *
63306 GTCAT-ATTTAAGAG-ACAAACTCT-GA-TTCTACTAAAAA-CGGTGGAAAAAAAGCTTTTCTCG
307 GTC-TCATTTGAG-GCACGAACT-TAGACTT-TAC-AAAAATTGGTGGGAAAAAAGCCTTTCTTG
* * * ** ** * * * * * * * * * *
63366 CGATATCAAAGCGTCAACGTCTTGAATTCTAATGA-AGGGAATGTGTTTTTGGCTTCC-CAGCCT
367 CGAAACCAAAGCATCAATATGATGTATCCTAAGGAGA-AGACTATGTTTATGG-TGCCTAATCC-
* * * ** * * * ** *
63429 TGAAAAGAGTGGAGATTATTACAAGAATTGATGCTTGTTTTAATTAAGA
429 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
* * * ** * * * * ** *
63478 TACGAACTTTGATT-TA-AAGGAAAATAAG-GCAAAGAAAAG-ATTTCT-ATGCAAAAGAAAATC
1 GACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAGC
* * * * * * * * * * **
63538 ATCAATATCATTTAACCTCA-G-GAGGAGATTGTGTTTATAGC-ACCAAATC-ACAAAATGAATG
61 ATCAATGTCATGTATCCTAATGAAAGGA-A-TGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATG
* * * * * ** * * *
63599 AAGA-TCATTACTAGAATCCATGTTTGTCTCATTGGAGGTATGAACATAGACTTTACA--AAAAT
123 GAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAAT
* ** * * * * * * * *
63661 TGGTGGGAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCATTATGATGTATCCCAATGAGAAG
186 AGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * * * ** * *
63723 ACTGTGTCTATGGTGCTTAA-CCCTAAAAAGAA-CAGGGATTAGTA-TGAGTTTTCATGTTTATC
248 AATGTGTTTATAGTGCCTAATCAC-AAAATGAATGA-AGATCATTACT-AGAATCCATGTTTGTC
* * * * ** * * * *
63785 GT-ATTTAAGAG-ACAAACTTTG--TTTCAATCAAAAA-CGGCAGAAAGAAAAGCTTTTCCTGTG
310 -TCATTTGAG-GCACGAACTTAGACTTT--A-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCG
* * * * * * * * * * * *
63845 AGACCAAAGCATTAATATCATGTATCGTAATGA-AAGGAATTTGTTTTTGGCTTCCCAGTCTTGA
369 AAACCAAAGCATCAATATGATGTATCCTAAGGAGAA-GACTATGTTTATGG-TGCCTAATCCTGA
* * * *
63909 AAAGAA-GGGAGA-TAGTTACGAG-AATCGATGCTTGTCTTATTTCAAG-
432 AAAGAATGGG-GATTAG-TATGAGTATTC-ATGTTTGTCATATTT-AAGA
* ** * * * * * ** ** * ** * *
63955 TATGAACTTTTATT-TA--AAGGAAAAGAGTGTAAAGAAAAGATTTCCAGGCAAAAGAAAATCGT
1 GACAAACTTTGATTCTATCAA--AAACG-GTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCAT
* * ** * * * * * * * ** *
64017 CAATATCATTTGCCCTTATG-AGGAGAATGTGTTTATAG-TACCTAATC-ACAAAATGAATGAAG
63 CAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGGAG
* * ** * * * * ** * * *
64079 A-TCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTTGACCT-CATGAAAATTGGT
126 ACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG-
** * * ** ** * * * * * * * *
64142 GGGAA-AAATGCCTTT-GTTGCAAAACCAAAGCATCAATATGATGTATCCTAGTTAGAAGACTAT
189 GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * ** * * * * *
64205 GTTTATGGTGCCTAATC-CTAAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTCAT-GTT
253 GTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATT
* * * * * * *
64267 TAAAAG-ACAAACTCT-GA-TTCTACCAAAAA-CGGTGGAAAGAAAAGCTTTTCTCGC-AACACC
315 T-GAGGCACGAACT-TAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAA-ACC
** ** * ** * * * * * * * *
64327 AAAGCATCAACGTCTTGTATCTTAATCA-AGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGA
374 AAAGCATCAATATGATGTATCCTAAGGAGA-AGACTATGTTTATGG-TGCCTAATCCTGAAAAGA
* * * * * * * *
64391 GTGGAGACT-GTTACGAG-AATCAATGCTTATCTTATTTAAG-
437 ATGGGGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA
** * * * * * * ** *
64431 GTATGAACTTTGATT-TA-AAGGAAAATAGG-GCAAAGAAAAG-ATTTC-CATGCAAAAGAAAAT
1 G-ACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAG
* * * * * * * * * **
64491 CATCAATGTCATTTAACCTTA-G-GAGGAGATTGTGTTTATAGC-GCCAAATC-ACAAAATGAAT
60 CATCAATGTCATGTATCCTAATGAAAGGA-A-TGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAAT
* * * * * * * * *
64552 GAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGTATGAACATAGACTTT--ACGAAAA
122 GGAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAA
* ** * * * * * * *
64614 TTGGTGGGAA-AAAAG-TCTTTCTTGCAAAAGGAAAGCATCAATATGATGTATCCTAATGAGAAG
185 TAGG-GCAAAGAAAAGAT-TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * * *
64677 ACTGTGTTTATGGTGCCTAATC-CTGAAAA-GAA-CAGGGATTAGTA-TGAGTATTCAAGTTTAT
248 AATGTGTTTATAGTGCCTAATCAC--AAAATGAATGA-AGATCATTACT-AGAATCCATGTTTGT
* * * **** * * **
64738 CGT-ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CAACGGAAAGAAAAGCTTTTCTTGTT
309 C-TCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCG
* * * * * * * * * * * *
64799 ACACCAAAGCATCAATATCATGTATCGTAATGATG-GGAATTTGTTTTAGGGTTCCCAGTCTTGA
369 AAACCAAAGCATCAATATGATGTATCCTAAGGA-GAAGACTATG-TTTATGGTGCCTAATCCTGA
* * * * * * * *
64863 AAAGGA-GGGAGACTATTACGAG-AATCGATGCTTATCTTATTTAAGA
432 AAAGAATGGG-GATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGA
* ** * * * * * * ** ** * ** *
64909 TATGAACTTTTATT-TA-GAGGAAAAGCGG-GTAAAGATAAGATTTCCAGGCAAAAGAAAATCAT
1 GACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCAT
* * * * * * * * * ** * *
64971 CAATATCATTTATCCTTATG-AGGAGAATGTGTTTATAG-TACCTAATC-ACAAAATGAAAGAAG
63 CAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGGAG
* * * * * * * * * * *
65033 A-TCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACCTT--ACGAAAATTGG
126 ACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAATAGG
** * * * * ** * * * * * * *
65095 TGGGAA-AAATGCCTTT-CTTGCGAAACCAAAGCATCAATATGATGTATCCTAATTAGAAGACTA
189 -GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * ** * * * * *
65158 TGTTTATGGCGCCTAATC-CTGAAAA-GAATGCGGATTAGTA-TGAGTATTCTTGTTTGTCGT-A
252 TGTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCA
* * * ** * * * * **
65219 TTT-AAG-A-GAAACTTTGA-TTCCATCAAAAA-CAGTGGAAAGAAAAGCTTTTCTCGTGACCCC
313 TTTGAGGCACG-AACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACC
** * * * * * * * *
65279 AAAGCATCAACGTCATGTATCCTAATGA-AAGGAATGTGTTT-TTG-GCTTCACAGCCTTAAAAG
374 AAAGCATCAATATGATGTATCCTAAGGAGAA-GACTATGTTTATGGTGCCT-A-ATCCTGAAAA-
* * * * ** *
65341 GAATGGAGACT-GTTACGAG-AATCGATACTTGTCTTATTTAAG-
435 GAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA
** * * ** * * * ** *
65383 GTATGAACTTTGATT-TA-AAGGAAAATAGG-ACAAAGAAAAG-ATTTC-CATGCTAAAGAAAAT
1 G-ACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG--ACACCAAAG
* * * * * * * * ** * * * **
65443 CATCAATATTATATATCCTTA-GGAGGAGAATGTATTTAT-AATGCCTAATC-ACAAAATGAATG
60 CATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATG
* * * * * * * ** * * * **
65505 AAGA-TCATTACTAGAATCAATGTTTATCTCAGTGGAGGCACGAACTTAGACTTTGCA--AAAAT
123 GAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAAT
* * * ** * * * * * * *
65567 TGGTG-AGAA-AAAATGCCTTT-CTTGCAAAACCAAAGCATCAACATGATGTATCTTACTGAGAA
186 AGG-GCA-AAGAAAA-G-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * * ** * * * * *
65629 TACTATGTTTATGGTGCATAATTCTTA-AAAAT--ATGGGGTTTAGTA-TGAGTATTCATGTTTG
247 GAATGTGTTTATAGTGCCTAA-TC--ACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTG
* *** * * *
65690 T-TGTATTTGA-G-A-GACACTT-TTTTTCTATCAAAAACT-GTGGAAAGAAAAGCTTTTCTTGC
308 TCT-CATTTGAGGCACGA-ACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGC
* * * * * * * * * *
65749 -AACACCAAAGCATCAATGTCATGTGTCCTAATGA-AGGGAATGTGTTT-TGGCTTCCCAATCTT
368 GAA-ACCAAAGCATCAATATGATGTATCCTAAGGAGA-AGACTATGTTTATGG-TGCCTAATCCT
* * * ** * * *
65811 GAAAAGAATAGAGA-AAGTTATGAG-AAACGATGCTTATCTTATTTAAG-
430 GAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA
** *** * * * ** *
65858 GTATGAACTTTGATT-TA--AAGGAAAATATGGCAAAG-AAAG-ATTTC-CATGCAAAAGAAAAT
1 G-ACAAACTTTGATTCTATCAA--AAACGGTGG-AAAGAAAAGCTTTTCTCGTG--ACACCAAAG
* * * * * * * *
65917 CATCAATATCATTTATCCTAATTG-GA-GAATGTGTTTATAG-TGCCTAATC--GCAAAATGAAT
60 CATCAATGTCATGTATCCTAA-TGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTG-AAAA-GAAT
* * * ** * * * * *
65977 GAAGAGC-ATTACTAGAATCCATATTTGTCTCATTTTAGGCATGAACTTAGAGTTTACA--AAAA
122 GGAGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAA
* ** * * ** * * * *
66039 TTGGTGGGAA-AAAAGCCTTT-CTTGCAAAACCAAAGCATCAATATTATGTATCCTAATGA-GAA
185 TAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * *
66101 AACTATATTTATAGTGCCTAATC-CTAAAAAGAACT-AGGCTTAGTA-TGAGTATTCATGTTTGT
248 AA-TGTGTTTATAGTGCCTAATCAC-AAAATGAA-TGAAGATCATTACT-AGAATCCATGTTTGT
* * * * ** * * *
66163 CGT-ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CGACGGAAATAAAAGCTTTTCTCGCG
309 C-TCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCG
* * * * * * * *
66224 ACACCAAAGCATCAATGTCATGCATCCT-AGTGA-AAGGTA-TATGTTTTTGGCTTCCTAGTCTT
369 AAACCAAAGCATCAATATGATGTATCCTAAG-GAGAA-G-ACTATGTTTATGG-TGCCTAATCCT
* * * * * * * *
66286 GAAAAGAATGGAGACTATTACGAG-AATCAATGCTAGCCATATTTAAG-
430 GAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGA
* * ** * ** * * ** *
66333 GTATAAACTTTGATT-TA-AAGGAAAATAAG-GCAAAG-AAAGGATTTC-CATGCAAAAGATAAT
1 G-ACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTG-ACACCA-AAG
* * * * * * **
66393 CATCAATATCTTTTATTCTAATG-AGGAGAATGTGTTTATAGTGCTT---A-TC-ACAAAATGAA
60 CATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTT-TTG-GCTTCCCAGTCTTGAAAA-GAA
* * * * * * * * ** ** *
66452 TGAAGA-TCATTACTAGAATCTAGGTTTGTCTCATTTGAGGCACAAACTTACACTTTACA--AAA
121 TGGAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAA
* * * * * * * * *
66514 ATTGGTG-AGAAAAAAAGCCTTT-CTTGCGAAACCGAAGA--ATCAATATGATATATCCTAAGGA
184 ATAGG-GCA-AAGAAAAG-ATTTCCATGC-AAA-AGAAAATCATCAATATCATTTATCCTAATGA
* * * * * ** **
66575 GAAGACTATATTTATGGTGCCTAATC-CGGAA-GAATG--G-GGA-T--TAG--T--A----T-T
244 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * * *
66623 -T-A--AGA-G-ACAAACTCT-GA-TTTAACCAAAAA-CGATGGAAAGAAAAGCTTTTCTCGCGA
309 CTCATTTGAGGCACGAACT-TAGACTTT-A-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGA
* ** * * * * * * * * *
66679 CACCAAAGCATCAACGTCATGTATCCTAATGA-AAGAAATGTGTTTTTGGCTTCC-CAGCCTTAA
370 AACCAAAGCATCAATATGATGTATCCTAAGGAGAAG-ACTATGTTTATGG-TGCCTAATCC-TGA
* * * * * * *
66742 AAAGAATGGAGACTATTACGAG-AATCGATGCTTGTCACATTTAAG-
432 AAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGA
* * * * * * ** *
66787 GTATAAGCTTTGATT-TA-AAGGAAAATAGG-GCAAAGAAAAG-ATTTC-AATG-CA--AAAGTA
1 G-ACAAACTTTGATTCTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCA
* * * * * * * * * * * **
66844 GGTTGTCAGTATCGTTTATCCTAAT--AGGAGAATGTATTTATAG-TGCCTATTC-ACAAAATGA
62 -----TCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GA
* * * * * * * * * * * *
66905 ATGAAGA-TCATCACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACA--AA
120 ATGGAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAA
* * ** * * ** * * * * * *
66967 AATTGGCTGGAAA-AAGTGCCTTT-CTTGCAAAACCAAAGCATCAACATGATGTATCTTAGTGAG
183 AATAGG--GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * * ** * * * * * *
67030 AAGACTATGTTTATGGAGCCTAATTCTTAAAAAG-ATCG-GGATTAGTA-TGAGTATTCATGTTT
245 GAGAATGTGTTTATAGTGCCTAA-TCACAAAATGAAT-GAAGATCATTACT-AGAATCCATGTTT
* ** * * * *
67092 GTCGT-ATTTGAGAG-ACAAACTTTTA-TTCTATCAAAAACT-GTGGAAAGAAAATCTTTTCTTG
307 GTC-TCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTG
* * * * * * * * * *
67153 C-AACACCAAAGCATCAATGTCATGTGTCCTAATGA-AGGGAATGTGTTT-TGGCTTCCCAATCT
367 CGAA-ACCAAAGCATCAATATGATGTATCCTAAGGAGA-AGACTATGTTTATGG-TGCCTAATCC
* * * * ** * * *
67215 TGAAAACAATGGAGAAT-GTTATAAG-AAACGATGCTTGTCTTATTTAAGG
429 TGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA
*** * * * * * * * ** *
67264 GGTGAACTTTGATTTTATGAAAAATAAGGT--AAAGAAAAGGTTTCCATGCAG-AAAAGAAAATC
1 GACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAAGAAAAGCTTTTC-T-C-GTGACACCAAAGC
* * * * * * * * * ** *
67326 ATCAATATCATTTATCTTAATG-AGGAGAATGTGTATATAG-TGCCTA-TC-ACAAAATGAATGA
61 ATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGG
* * * * * * * * *
67387 AGA-TCATTACTAGAATCCAGGTTTGTCTCAATTGAA-GCATGAACTTAGACTTTACA--AAAAT
124 AGACT-ATTACGAGAATCGATGCTTGTCT-TATTTAAGGTATGAACTTTGA-TTTAAAGGAAAAT
* *** * * ** * * ** * *
67448 TGGTGGGCA-AAAAGCCTTT-CTTGCAAAATCAAAGCATTAACGTCATGTATCCCAATGAAGG-G
186 AGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAG
* * * * * * * * * *** *
67510 AATGTGTTTTTGGCTTCCCAACTTC-GAAAA-GAATGGAGA-CTGTTGCGAGAATTGGTGCTTGT
248 AATGTGTTTATAG-TGCCTAA--TCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGT
* * * ** * * * * * *
67572 CTTATTTAAGGTATAAACTTTGA-TTTA-AAGGAAAATAG-GGCAAAGAAAG-ATTTCTATGCAA
309 CTCATTTGAGGCACGAACTTAGACTTTACAA--AAATTGGTGGGAAA-AAAGCCTTTCT-TGCGA
** * * * * * * * *
67633 AAGAAAATCATCTATATCATTTATCCTAATTGGAG-A-A-TGTGTTTATAGAGCCTAATCAT-AA
370 AACCAAAGCATCAATATGATGTATCCTAA--GGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
** * * * * * * * *
67694 AATGAATGAAGATCATTACT-AGAATCCGTGTTTGTCACATTT-GGG
433 AA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCATATTTAAGA
** * * * ** * * * * *
67739 GTATGAACATAGACTT-TA-CAAAAATTGGTGGGCA-AAAAGCCTTTCTTGCGAAATCAAAGCAT
1 G-ACAAACTTTGA-TTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCAT
* * * * * *
67801 TAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCTAGCCTTGAAAAGAATGGAGAC
63 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGAC
* *
67866 TGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAA
128 TATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAA
* * *
67931 AG-AAAGATTTCTATGCAAAAGAAAATCATCTATATCATTTATCCTAATTA-GAGAATGTGTTTA
193 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * ** *
67994 TAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCGTG-TTGACTCATTTGAGATAA
258 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * *
68058 GAACATAGACTTTACAAAAATTGGTGGGAAAATAGCCTTTCTTGTGAAACGAAAGCATCAATATG
323 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG
** * * * **
68123 ATGTATCCTAATAAGAAGACTATGTTTTTGGTACCTAATCCTTAAAAGAACAGGGATTAGTATGA
388 ATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * *
68188 GTATTTAGGTTTGTCATATTTAATA
453 GTATTCATGTTTGTCATATTTAAGA
* * ** * * * *
68213 GACAAACGTTAATTCTATCAAAAACGGCAGAAAGAAAAGCATTTCTTGTGACACCAAAGCCTTAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * * * * *
68278 TATCATATATCGTAATGAAGGGAATTTGTTTTTGGCTTCCCAATCTTGAAAAGAAGGGAGACTAT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
** * * * * * *
68343 TGTGAAAATCGATGTTTATCTTATTTAAGGTATGAACTTTTATTTAAAGGAAAAGAGGGTAAAGA
131 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
* * * *
68408 AAAGATTTCCAGGCAAAAAAAAATCATCAATTTCATTTATCCTTATGAGGAGAATGTGTTTATAG
196 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
** * *
68473 CACCTATTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAA
261 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * *
68538 CTTAGACCTTACGAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
326 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
** * * *
68603 TATCCTAATTAGAAGACTATGTTTATGGCT-CCTGATCCAGAAAAGAACT-CGGATTAGTATGAG
391 TATCCTAAGGAGAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAA-TGGGGATTAGTATGAG
* *
68666 TATTCTTGATTGTCATATTTAAGA
454 TATTCATGTTTGTCATATTTAAGA
* * * *
68690 GACAAACTTTGATCCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * *
68755 CGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGCTTCCCAGCCTTAAAAAGAATGGAGACTAT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * * *
68820 TATGAGAATCGATGCTTGT-TATATTTAAGGTATGAGCTTTGATTTAAAAGAAAATAGGCCAAAG
131 TACGAGAATCGATGCTTGTCT-TATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * * * *
68884 AAAAGATTTCCATGCAAAAGTAAATCGTCAGTATCGTTTATCCTAGT-AGGAGAATGTATTTATA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
68948 GTGCCTAGTCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCAATTGAGGCGCGA
260 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
69013 ACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAACATGAT
325 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
* * * *
69078 GTAT-CTTAGTGAGAAAACTATGTTTATGGTGCCTAATTCCTAAAAAG-ATAGGGATTAGTATGA
390 GTATCCTAAG-GAGAAGACTATGTTTATGGTGCCTAA-TCCTGAAAAGAATGGGGATTAGTATGA
* * *
69141 GTATTCACGTTTGTCGTATTTGAGA
453 GTATTCATGTTTGTCATATTTAAGA
* * * ** * ***
69166 GACAAGCTTTTAATCTATCAAAAATTGTGGAAAGAAAAGCATTTCTCACAACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * ** * * *
69231 TGTCATGTGTGCTAATGACGGGAATGTGTTTTT-GCTTCCCAATCTTGAAAAGAATGGAGAATGT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
** * * * * * * *
69295 TGTGAGAAACAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAAAAGGGCAAAGA
131 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
* * * *
69360 AAATATTTCCCTACAAAAAAGAAAATCATCAGTATCATTTATCCTAATGAGGAGAATGTGTTTAT
196 AAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * *
69425 AGTGCCT-ATCACAAAATGAATGAAGATCATTACCATAATCCAGGTTTGTTTCAATTGAGGCATG
259 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * **
69489 AACTTAGACTTTGCAAAAATTGGTGGGAAAAAATTCCTTTCTTCCAAAACCAAAGCATCAACGTG
324 AACTTAGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATG
* * *
69554 ATGTAT-CTTAGTGAGAAGACTATGTTTATGGTGCCTAATTCTTAAAA-AGATGGGGATTAGTAT
388 ATGTATCCTAAG-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA-ATGGGGATTAGTAT
* * *
69617 GAGTATTCATGTTTATCGTATTTGAGA
451 GAGTATTCATGTTTGTCATATTTAAGA
* * * * ** *
69644 GACAAACTTTTAATCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACATCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * * * * * *
69709 TATCATGTGTCCTAATGAAGGGAACGTG-TTTTAGCTTCCCAATCTTGAAAAGAATGGAGAATGT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
* * * * * * * * *
69773 TATGAGAAACAATGCTTGTCTTATTTAAGGGATGAAATCTGATTTTAAGAAAAATATGGCAAAGA
131 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
* * *
69838 AAAGATTTCCAGGTAAAAGAAAATCATCAATATCATTTATCCCAAT-AGGAGAAATGTGTTTATA
196 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG-AATGTGTTTATA
* *
69902 GTGCCTAATCACAAAATGAAT-AATGATCATTAGTAGAATCCATGTTTGTCTCAATTGAGGCACG
260 GTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
69966 AACTTAGACTTTGCAAATATTAGTGGGAAAAATG-CTTTCTTGCGAAACCAAAACATCAATATTG
324 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TG
* * ** * ***
70030 -TGTATCTTAAAGAGAAGACTATGTTTATCATGCCTAAATCCTAAAAAGAACATGGATTAGTATG
388 ATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCT-AATCCTGAAAAGAATGGGGATTAGTATG
* *
70094 AGTATTCTTGTTTGTCACATTTAAGA
452 AGTATTCATGTTTGTCATATTTAAGA
* ** * * *
70120 GACAAACTTTGATTCCATCAAAAATAGTGGAAAGAAAAGCTTCTCTCGTGTCACCAAAGAATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * *
70185 TGTCATGTATCCTAAT-AAAGGGAATGCGTTTTTCGCTTCCCAGTCTTGAAAAGAATAGAGACCA
66 TGTCATGTATCCTAATGAAA-GGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTA
* ** * *
70249 TTACAAGAATCGATGCTTACCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAAGGTAAAG
130 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * * *
70314 AAAGGATTTCTATGTAAAAGAAAATCATCAATAT-ATTTATCCTAATGGGGAGAATGTTTTTATA
195 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** * * * *
70378 GTGCCTCATCACAAAATGAACCAAGATCATTAC-AAAATCCTTATTTGTCTCATTTGAGGCATGA
260 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * *
70442 ACTTAGAGTTTACTAAAATTGGTAGGAAGAAAGCCCTTCCTGCGAAACCAAAGC-TACAATATCA
325 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCAT-CAATATGA
* * * *
70506 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGATTGGGGATTTGTATGAG
389 TGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
70571 TATTCATGTTTGTCATATTTAAGA
454 TATTCATGTTTGTCATATTTAAGA
* * * * *
70595 GACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTCTCTTGCGACACTAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * *
70660 TGTCATGTATCCTAATCAAAGGAATGTG-TTTTGGCCTCCTAATCTTGAAAAGAATGGAGAC-AG
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTA-
* * *
70723 TTACGAGAATTGATGCCTT-TCTTATTTAAGGGATGAACTTTGATTTTAAA-GAAAATAAGGCAA
130 TTACGAGAATCGATG-CTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGGAAAATAGGGCAA
* * * * *
70786 AGAAAAGATTTCCATACAAAAAAAAATCATCAATATCATTTATCCTTAGGAGGGGAATGTGTTTA
193 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
70851 TGGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAT
258 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * *
70916 GAACTTAGACTATACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCAAAACCATAGCATCAATATG
323 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG
* * * *
70981 ATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGC
388 ATGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * *
71046 GTTTTCTTCTTTGTCGTATTTAAGG
453 GTATTCATGTTTGTCATATTTAAGA
* * * * *
71071 GTCAAACTTT-ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACTCCAACGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * * * *
71135 TGTTATGTATCCTAATGAAGGGAATTTGTTTTTGGCTTCCTAGTCTTGGAAAGAATGGAGACTGT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
*** * *
71200 TACGAGAATCGATGCTAACCATATTTAAGGTATAAACTTTGATTTAAAGGAAAATAGGGCAAAGA
131 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
* * * * *
71265 AAGGATTTCCATGCAAAAGATAATCATCATTATCTTTTATTCTAATGAGGAGAATGTGTTTATAG
196 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * * *
71330 TG-CTTATCACAAAATGAATGAAGATCATTACTATAATCTAGGTTTGTCTCATTTAAGGCACAAA
261 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * * *
71394 CTTACACTTTACAAAAATTGGTGAGAAAAAAACCTTTCTTGCGAAACCAAAGAATCAATATGATA
326 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
*
71459 TATCCTAAGGAGAAGACTATATTTATGGTGCCTAATCCTG--AAGAAT---G----G---G-G-A
391 TATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
71510 TT-A-----G---TATTTAAGA
456 TTCATGTTTGTCATATTTAAGA
* * * *
71523 GAGAAACTCTGATT-TAACCAAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCA
1 GACAAACTTTGATTCT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCA
* * * *
71587 ACGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGCTTCCCAGCCTTAAAAAGAATGGAGACTA
65 ATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTA
** *
71652 TTACGAGAATCGATGCTTGTCACATTTAAGGTAT-AAGCTTTGATTTAAAGGAAAATAGGGAAAA
130 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAA-CTTTGATTTAAAGGAAAATAGGGCAAA
* * ** * * * *
71716 GAAAAGATTTCAATGCAAAAGTAGGTCGTCAGTATCGTTTATCCTAAT-AGGAGAATGTATTTAT
194 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
*
71780 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCACG
259 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
71845 AACTTAGACTTTACAAAAATTGGCT-GGAAAAAGTGCCTTTCTTGCAAAACCAAAGCATCAACAT
324 AACTTAGACTTTACAAAAATTGG-TGGGAAAAA-AGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * * *
71909 GATGCAT-CTTAGTGAGAAGACTATGTTTATGGAGCCTAATTCTTAAAATG-ATGGGGATTAGTA
387 GATGTATCCTAAG-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTA
* *
71972 TGAGTATTCATGTTTGTCGTATTTGAGA
450 TGAGTATTCATGTTTGTCATATTTAAGA
* ** * **
72000 GACAAACTTTTATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
* * * * * *
72065 TGTCATGTGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAACAATGGAGAATGT
66 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
** * ** * *
72129 TATAAGAAACGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGAAAAATA
131 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATA
72185 AGAGATTTGG
Statistics
Matches: 12578, Mismatches: 2134, Indels: 1304
0.79 0.13 0.08
Matches are distributed among these distances:
449 4 0.00
450 49 0.00
451 33 0.00
452 204 0.02
453 314 0.02
454 377 0.03
455 19 0.00
456 16 0.00
457 5 0.00
458 3 0.00
459 6 0.00
460 4 0.00
461 37 0.00
462 7 0.00
463 4 0.00
464 198 0.02
465 43 0.00
466 54 0.00
467 120 0.01
468 14 0.00
469 8 0.00
470 11 0.00
471 13 0.00
472 353 0.03
473 454 0.04
474 600 0.05
475 1496 0.12
476 2566 0.20
477 3575 0.28
478 1356 0.11
479 283 0.02
480 12 0.00
481 1 0.00
482 2 0.00
483 6 0.00
484 1 0.00
485 1 0.00
489 1 0.00
490 3 0.00
491 1 0.00
492 2 0.00
494 4 0.00
495 4 0.00
496 2 0.00
497 88 0.01
498 58 0.00
499 48 0.00
500 113 0.01
501 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (477 bp):
GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCATCAA
TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTAT
TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
TATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
TTCATGTTTGTCATATTTAAGA
Found at i:60835 original size:611 final size:610
Alignment explanation
Indices: 59732--60845 Score: 1764
Period size: 611 Copynumber: 1.8 Consensus size: 610
59722 CGCGCGTCAC
*
59732 CAAAGCATCAATGTCATGTATCCTACTGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGA
1 CAAAGCATCAATATCATGTATCCTACTGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGA
* ** *
59797 ATAGAGACTATTGCGAGAATCGATACTAGTCATATTTAAGGTATGAACTTTGATATAAAGGAAAA
66 AGAGAGACTATCACGAGAATCGATACTAGTCATATTTAACGTATGAACTTTGATATAAAGGAAAA
* * * * *
59862 TAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATTCTAATGAGAAGAA
131 GAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
*
59927 TGTGTTTATAGTACCTATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTT
196 TGTGCTTATAGTACCTATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTT
* * * *
59992 GAGGCACAAACTTAGACTTTACATAAACTGGTGAGAAAAAAAGCCTTTCTTGTGAAACCAAAGCA
261 AAGGCACAAACTGAGACTTTACAAAAACTGGTGAGAAAAAAAGCCTTTCTTGCGAAACCAAAGCA
* * * **
60057 TCAATATGATATATCCTAAGGAGAAGGCTATGTTTATGGTGCATAATCCTGAAAAGAATGGGCTT
326 TCAATACGATATATCCTAACGAGAAGACTATGTTTATGGTGCATAATCCTGAAAAGAATGGGAAT
* *
60122 TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTACCGGAAATGGTGGAA
391 TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTACCGAAAACGGTGGAA
60187 AGAAAAGCTTTTCTCATGACACCAAAGCGTCAATGTCTTGTATCCTAAAGCTTTTCCCAGTCATG
456 AGAAAAGCTTTTCTCATGACACCAAAGCGTCAATGTCTTGTATCCTAAAGCTTTTCCCAGTCATG
60252 AAAAGAGAGGAGACTGTTATAAGAATCGTATTTAGGAAATTGGTGAGTATTCATGTTCATCGTAT
521 AAAAGAGAGGAGACTGTTATAAGAATCGTATTTAGGAAATTGGTGAGTATTCATGTTCATCGTAT
60317 TTAGGAAAAGCTTTTCTTGTTACAA
586 TTAGGAAAAGCTTTTCTTGTTACAA
* ** *
60342 CAAAGCATCAATATCATGTATCGTTA-TGATGGGAATTTGTTTTTGGCTTCCCAGTCTTGAAAAG
1 CAAAGCATCAATATCATGTATC-CTACTGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAG
* * * * * * *
60406 AAGGGAGACTGTCACGAGAATCGATGCTTGTCTTATTTAACGTATGAACTTTTATTTAAAGGAAA
65 AAGAGAGACTATCACGAGAATCGATACTAGTCATATTTAACGTATGAACTTTGATATAAAGGAAA
* * * * *
60471 AGGGGGTAAAGAAAAGATTTCCAAGCAAAAGAAAATCGTCAATATCATTTATCCTTATGAGGAGA
130 AGAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
*
60536 ATGTGCTTATAGTACCTAATCACAAAATGAATGGAGATCATTACTAGAATCCAAGTTTGTCTCAT
195 ATGTGCTTATAGTACCT-ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCAT
* * *
60601 TTAAGGCACGATCTGAGACTTTACAAAAATTGGTGAGAAAAAAAGCCTTTCTTGCGAAACCAAAG
259 TTAAGGCACAAACTGAGACTTTACAAAAACTGGTGAGAAAAAAAGCCTTTCTTGCGAAACCAAAG
* *
60666 CATCCATACGATATAT-CTAAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
324 CATCAATACGATATATCCT-AACGAGAAGACTATGTTTATGGTGCATAATCCTGAAAAGAATGGG
*
60730 AATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATCGAAAACGGTG
388 AATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTACCGAAAACGGTG
* *
60795 GAAAGAAAAGCTTTTCTCGTGACACCAAAGCGTTAATGTCTTGTATCCTAA
453 GAAAGAAAAGCTTTTCTCATGACACCAAAGCGTCAATGTCTTGTATCCTAA
60846 TGAAGGGAAT
Statistics
Matches: 454, Mismatches: 47, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
610 183 0.40
611 271 0.60
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (610 bp):
CAAAGCATCAATATCATGTATCCTACTGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGA
AGAGAGACTATCACGAGAATCGATACTAGTCATATTTAACGTATGAACTTTGATATAAAGGAAAA
GAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
TGTGCTTATAGTACCTATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTT
AAGGCACAAACTGAGACTTTACAAAAACTGGTGAGAAAAAAAGCCTTTCTTGCGAAACCAAAGCA
TCAATACGATATATCCTAACGAGAAGACTATGTTTATGGTGCATAATCCTGAAAAGAATGGGAAT
TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTACCGAAAACGGTGGAA
AGAAAAGCTTTTCTCATGACACCAAAGCGTCAATGTCTTGTATCCTAAAGCTTTTCCCAGTCATG
AAAAGAGAGGAGACTGTTATAAGAATCGTATTTAGGAAATTGGTGAGTATTCATGTTCATCGTAT
TTAGGAAAAGCTTTTCTTGTTACAA
Found at i:61540 original size:182 final size:181
Alignment explanation
Indices: 61200--61546 Score: 455
Period size: 182 Copynumber: 1.9 Consensus size: 181
61190 TCCTGAAAAA
* * **
61200 AATGGGGATTAGTATGAGTATTCATGTTAGTTGTACTTAAGAGACAAACATTGATTCTATCAAAA
1 AATGGGCATTAGTATGAGCATTCATGTTAGTCATACTTAAGAGACAAACATTGATTCTATCAAAA
* * *
61265 ATGGGGGAAAAAAAGCATTTCTAGCAACACCAAAGCATCAATGTCACGTTTCTTAATGAAGGGAA
66 ATGGGGGAAAAAAAGCATTTCTAGCAACACCAAAGCATCAACGTCACGTATCCTAATGAAGGGAA
* *
61330 TGTGATTTTGGCTTACTAGTCTTGAAAAGAATGGAGACTATTACACCAAAG
131 TGTGATTTTGGCTTACCAGTCATGAAAAGAATGGAGACTATTACACCAAAG
* *
61381 AATGGGCATTAGTATGAGCATTCATGTTTGTCATATTTAAGAGACAAAC-TCTGATTCTATCAAA
1 AATGGGCATTAGTATGAGCATTCATGTTAGTCATACTTAAGAGACAAACAT-TGATTCTATC-AA
* * * ** * **
61445 AAAT-GTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCGTCAACGTCTTGTATCCTAATGAAGG
64 AAATGGGGGAAA-AAAAGCATTTCTAGCAACACCAAAGCATCAACGTCACGTATCCTAATGAAGG
* * *
61509 GAATGTGTTTTTGGCTTCCCAGTCATGAAAAGAGTGGA
128 GAATGTGATTTTGGCTTACCAGTCATGAAAAGAATGGA
61547 CACTGTTATG
Statistics
Matches: 141, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
180 1 0.01
181 59 0.42
182 81 0.57
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.29
Consensus pattern (181 bp):
AATGGGCATTAGTATGAGCATTCATGTTAGTCATACTTAAGAGACAAACATTGATTCTATCAAAA
ATGGGGGAAAAAAAGCATTTCTAGCAACACCAAAGCATCAACGTCACGTATCCTAATGAAGGGAA
TGTGATTTTGGCTTACCAGTCATGAAAAGAATGGAGACTATTACACCAAAG
Found at i:64665 original size:954 final size:954
Alignment explanation
Indices: 61377--67484 Score: 7721
Period size: 954 Copynumber: 6.4 Consensus size: 954
61367 CTATTACACC
* *
61377 AAAGAATGGGCATTAGTATGAGCATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
** * * *
61442 AAAAAATGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCGTCAACGTCTTGTATCCTAATGAA
66 AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGAA
* * * * *
61507 GGGAATGTGTTTTTGGCTTCCCAGTCATGAAAAGAGTGGACACTGTTATGAGAATTGATGCTTGT
131 GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* * *
61572 CTTATTTAAGATACGAACTTTGATTTAAAGGAAAATAGGGCAAAGAATAGATTTCCATGCAAAAG
196 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* *
61637 AAAATCATCAATATCATTTAACCTCAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
261 AAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAA
* * * * *
61702 AGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTCGACTCTACAAAAATT
326 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * ** *
61767 GGTAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAACGAGAAGACTA
391 GGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * ** * * * *
61832 TGTTTACGATGTTTTATCCTGAAAAGAATGGGGATTAGAATGAGTATTCATGTTTCTCGTATTTA
456 TGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTATCGTATTTA
* * * * *
61897 AGAGACAAACTTTGATTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCACCACACCGAAGCGT
521 AGAGACAAACTTTGTTTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCAT
* * *
61962 CAATGTCATGTATCCTAGTGAAAGGAATATGTTTTTGGCTTCCCAATCTTGAAAAG-AGTGGAGA
586 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAG-GGAGA
* * *
62026 CTGTTATGAGAATCGATGCTTTATCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGCGC
650 CTATTACGAGAATCGATGC-TTATCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGC
* * * *
62091 AAAGAAAAGATTTCCATGCAAAAGAAAATCACCAA-ATTCATTTAACCTTAGGAGGAGAATGTGT
714 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA-TCATTTATCCTAATGAGGAGAATGTGT
* *
62155 TTATAGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGG
778 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * * **
62220 CACGAACTTAGACTTTGCAAAAATTGGTGGAAAAAAAGGCTTTCTTGTGAAACCAAAGCATCAAT
843 CACGAACTTAGACCTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAAT
* * *
62285 ATGATGTATCCTAATGAGAAGACTACGATTCTGGTGCCTAATCC-AGA
908 ATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-A
* * ** *
62332 AAAGAATAGGGATTAGTATGAGTATTCATGTTAGTTGTACTTAAGAG----A--C--A--CTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
* * * * * * * * *
62387 -AAAATGATGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCACGTATTCTAAAGAA
66 AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGAA
* * * * *
62451 GGGAATGTGTTCTTGGCTTGCTAGTCTTGAAAAGAATGGAGATTGTTACCAGAATCGATGCTTGT
131 GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
* *
62516 CTTATTTAAGATACGAACTTTGATTTAAAGGAAAATAGGGCAAAG-AAAGATTTCCATGCAAAAG
196 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * *** * *
62580 AAAATTATCAATATCATTTATCC-TAATTGGAGAATGTGATTATAGTGCCTAAA-CATAAAATGA
261 AAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCC-AAATCACAAAATGA
* ** *
62643 ATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTGAGGCAAAAACTTAGACTTTCCAAAAAT
325 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*
62708 TGGTGGGAATAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
390 TGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * *
62773 ATGTTTATAGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATATTT
455 ATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTATCGTATTT
* * * * *
62838 AGGAGACAAACTTT-TATTCTATCAAAAATGGGGGAAAGAAAAGCTTATCTCGTGACACCAAAGC
520 AAGAGACAAACTTTGT-TTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCGCGACACCAAAGC
* * * *
62902 ATCAATGTCGTGTAACCTAGTGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-TAGTGGA
584 ATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAG-GGA
* * *
62966 GACTATTGCG-GCAATCGATGC-TAGCCATATTTAAGGTATGAACTTTGATTTAAAGGAAAATAG
648 GACTATTACGAG-AATCGATGCTTA-TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAG
* * *
63029 GGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTGTTCTAATGAGGAGAATGT
711 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * *
63094 GTTTATAGTGCCT-ATCACAAAATGACTGAAAATCATTACTAGAATCCAGGTTTGTCTCATTTGA
776 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
** ** *
63158 GGCACGAACTTAGATTTTACAAAAATTGGTGAGGAAAAATGCCTTTCTTGTGAAACCAATGCATC
841 GGCACGAACTTAGACCTTACAAAAATTGGTG-GGAAAAATGCCTTTCTTGCAAAACCAAAGCATC
* * * *
63223 AATATGATATATCCCAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGA
905 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
*
63273 AAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTA-C
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
* * * * * *
63337 TAAAAACGGTGGAAA-AAAAGCTTTTCTCGCGATATCAAAGCGTCAACGTCTTGAATTCTAATGA
66 -AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGA
* * * * * *
63401 AGGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAGAGTGGAGATTATTACAAGAATTGATGCTTG
130 AGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * * *
63466 TTTTAATTAAGATACGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCTATGCAAAA
195 TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * **
63531 GAAAATCATCAATATCATTTAACCTCAGGAGGAGATTGTGTTTATAGCACCAAATCACAAAATGA
260 GAAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGA
* * * *
63596 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGAGGTATGAACATAGACTTTACAAAAAT
325 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * *
63661 TGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCATTATGATGTATCCCAATGAGAAGACT
390 TGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * * *
63726 GTGTCTATGGTGCTTAACCCTAAAAAGAACAGGGATTAGTATGAGTTTTCATGTTTATCGTATTT
455 ATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTATCGTATTT
* * * *
63791 AAGAGACAAACTTTGTTTCAATCAAAAACGGCAGAAAGAAAAGCTTTTC-CTGTGAGACCAAAGC
520 AAGAGACAAACTTTGTTTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTC-GCGACACCAAAGC
* * * *
63855 ATTAATATCATGTATCGTAATGAAAGGAATTTGTTTTTGGCTTCCCAGTCTTGAAAAGAAGGGAG
584 ATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAGGGAG
* * * *
63920 A-TAGTTACGAGAATCGATGCTTGTCTTATTTCAA-GTATGAACTTTTATTTAAAGGAAAAGAGT
649 ACTA-TTACGAGAATCGATGCTTATCTTATTT-AAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * * ** *
63983 GTAAAGAAAAGATTTCCAGGCAAAAGAAAATCGTCAATATCATTTGCCCTTATGAGGAGAATGTG
712 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
64048 TTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
777 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * ** *
64113 GCACGAACTTTGACCTCATGAAAATTGGTGGGAAAAATGCCTTTGTTGCAAAACCAAAGCATCAA
842 GCACGAACTTAGACCTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAA
* *
64178 TATGATGTATCCTAGTTAGAAGACTATGTTTATGGTGCCTAATCCTAA
907 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * *
64226 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATGTTTAAAAGACAAACTCTGATTCTACC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
* * * *
64291 AAAAACGGTGGAAAGAAAAGCTTTTCTCGCAACACCAAAGCATCAACGTCTTGTATCTTAATCAA
66 AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGAA
* * *
64356 GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTAT
131 GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
64421 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
196 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
64486 AAAATCATCAATGTCATTTAACCTTAGGAGGAGATTGTGTTTATAGCGCCAAATCACAAAATGAA
261 AAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAA
* * * *
64551 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTATGAACATAGACTTTACGAAAATT
326 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* ** *
64616 GGTGGGAAAAAAGTCTTTCTTGCAAAAGGAAAGCATCAATATGATGTATCCTAATGAGAAGACTG
391 GGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* *
64681 TGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCAAGTTTATCGTATTTA
456 TGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTATCGTATTTA
* ** * **
64746 AGAGACAAACTTTGATTCTATCAAAAACAACGGAAAGAAAAGCTTTTCTTGTTACACCAAAGCAT
521 AGAGACAAACTTTGTTTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCAT
* * ** * * * *
64811 CAATATCATGTATCGTAATGATGGGAATTTGTTTTAGGGTTCCCAGTCTTGAAAAGGAGGGAGAC
586 CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAGGGAGAC
* * * ** *
64876 TATTACGAGAATCGATGCTTATCTTATTTAAGATATGAACTTTTATTTAGAGGAAAAGCGGGTAA
651 TATTACGAGAATCGATGCTTATCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAA
* * *
64941 AGATAAGATTTCCAGGCAAAAGAAAATCATCAATATCATTTATCCTTATGAGGAGAATGTGTTTA
716 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
65006 TAGTACCTAATCACAAAATGAAAGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCAC
781 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* *
65071 GAACTTAGACCTTACGAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATG
846 GAACTTAGACCTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATG
* * *
65136 ATGTATCCTAATTAGAAGACTATGTTTATGGCGCCTAATCCTGA
911 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * * *
65180 AAAGAATGCGGATTAGTATGAGTATTCTTGTTTGTCGTATTTAAGAG--AAACTTTGATTCCATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
* * *
65243 AAAAACAGTGGAAAGAAAAGCTTTTCTCGTGACCCCAAAGCATCAACGTCATGTATCCTAATGAA
66 AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGAA
* * * *
65308 AGGAATGTGTTTTTGGCTTCACAGCCTT-AAAAGGAATGGAGACTGTTACGAGAATCGATACTTG
131 GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTG
* *
65372 TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGACAAAGAAAAGATTTCCATGCTAAA
195 TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * *
65437 GAAAATCATCAATATTATATATCCTTAGGAGGAGAATGTATTTATAATGCCTAATCACAAAATGA
260 GAAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGA
* * * * *
65502 ATGAAGATCATTACTAGAATCAATGTTTATCTCAGTGGAGGCACGAACTTAGACTTTGCAAAAAT
325 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * *
65567 TGGTGAGAAAAAATGCCTTTCTTGCAAAACCAAAGCATCAACATGATGTATCTTACTGAGAATAC
390 TGGTGGGAAAAAA-GCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * * *
65632 TATGTTTATGGTGCATAATTCTTAAAA-ATATGGGGTTTAGTATGAGTATTCATGTTTGTTGTAT
454 TATGTTTATGGTGCCTAATCCTGAAAAGA-ACGGGGATTAGTATGAGTATTCATGTTTATCGTAT
* * * * * *
65696 TTGAGAGAC--ACTTTTTTTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAG
518 TTAAGAGACAAACTTTGTTTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCGCGACACCAAAG
* * * **
65759 CATCAATGTCATGTGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATAGA
583 CATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAGGGA
* * * *
65823 GA-AAGTTATGAGAAACGATGCTTATCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATATG
648 GACTA-TTACGAGAATCGATGCTTATCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
*
65887 GCAAAG-AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-TGGAGAATGTG
712 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * * *
65950 TTTATAGTGCCTAATCGCAAAATGAATGAAGAGCATTACTAGAATCCATATTTGTCTCATTTTAG
777 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* ** *
66015 GCATGAACTTAGAGTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAA
842 GCACGAACTTAGACCTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAA
* * * *
66080 TATTATGTATCCTAATGAGAAAACTATATTTATAGTGCCTAATCCTAA
907 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * *
66128 AAAGAACT-AGGCTTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTAT
1 AAAGAA-TGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTAT
** * * * *
66192 CAAAAACGACGGAAATAAAAGCTTTTCTCGCGACACCAAAGCATCAATGTCATGCATCCTAGTGA
65 CAAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGA
* * * * * * *
66257 AAGGTATATGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTAG
130 AGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * *
66322 CCATATTTAAGGTATAAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAGGATTTCCATGCAAAA
195 TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * ** * * **
66387 GATAATCATCAATATCTTTTATTCTAATGAGGAGAATGTGTTTATAGTG-CTTATCACAAAATGA
260 GAAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGA
* * * *
66451 ATGAAGATCATTACTAGAATCTAGGTTTGTCTCATTTGAGGCACAAACTTACACTTTACAAAAAT
325 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * *
66516 TGGTGAGAAAAAAAGCCTTTCTTGCGAAACCGAAGAATCAATATGATATATCCTAAGGAGAAGAC
390 TGGTG-GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * *
66581 TATATTTATGGTGCCTAATCC-G----GAA----G---A--ATG-G------GGATTA--GTATT
454 TATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTATCGTATT
* * * **
66623 TAAGAGACAAACTCTGATTT-AACCAAAAACGATGGAAAGAAAAGCTTTTCTCGCGACACCAAAG
519 TAAGAGACAAACTTTG-TTTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCGCGACACCAAAG
* * * * *
66687 CATCAACGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGCTTCCCAGCCTTAAAAAGAATGGA
583 CATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAGGGA
* **
66752 GACTATTACGAGAATCGATGCTTGTCACATTTAAGGTAT-AAGCTTTGATTTAAAGGAAAATAGG
648 GACTATTACGAGAATCGATGCTTATCTTATTTAAGGTATGAA-CTTTGATTTAAAGGAAAATAGG
* * ** ** * * *
66816 GCAAAGAAAAGATTTCAATGCAAAAGTAGGTTGTCAGTATCGTTTATCCTAAT-AGGAGAATGTA
712 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * *
66880 TTTATAGTGCCTATTCACAAAATGAATGAAGATCATCACTAGAATCCATGTTTGTCTCAATTGAG
777 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
*
66945 GCACGAACTTAGACTTTACAAAAATTGGCT-GGAAAAAGTGCCTTTCTTGCAAAACCAAAGCATC
842 GCACGAACTTAGACCTTACAAAAATTGG-TGGGAAAAA-TGCCTTTCTTGCAAAACCAAAGCATC
* * * * *
67009 AACATGATGTATCTTAGTGAGAAGACTATGTTTATGGAGCCTAATTCTTAA
905 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-TCCTAA
* * * * *
67060 AAAG-ATCGGGATTAGTATGAGTATTCATGTTTGTCGTATTTGAGAGACAAACTTTTATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
* * * * * *
67124 AAAAACTGTGGAAAGAAAATCTTTTCTTGCAACACCAAAGCATCAATGTCATGTGTCCTAATGAA
66 AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGAA
* * * ** *
67189 GGGAATGTG-TTTTGGCTTCCCAATCTTGAAAACAATGGAGAATGTTATAAGAAACGATGCTTGT
131 GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
** * * * * * *
67253 CTTATTTAAGGGGTGAACTTTGATTTTATGAAAAATAAGGTAAAGAAAAGGTTTCCATGCAGAAA
196 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC--AAA
* * * *
67318 AGAAAATCATCAATATCATTT-ATCTTAATGAGGAGAATGTGTATATAGTGCC-TATCACAAAAT
259 AGAAAATCATCAATATCATTTAACCTT-AGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAAT
* * * *
67381 GAATGAAGATCATTACTAGAATCCAGGTTTGTCTCAATTGAAGCATGAACTTAGACTTTACAAAA
323 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* *
67446 ATTGGTGGGCAAAAAGCCTTTCTTGCAAAATCAAAGCAT
388 ATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
67485 TAACGTCATG
Statistics
Matches: 4517, Mismatches: 575, Indels: 146
0.86 0.11 0.03
Matches are distributed among these distances:
926 12 0.00
928 77 0.02
929 87 0.02
930 234 0.05
931 206 0.05
932 130 0.03
933 1 0.00
934 1 0.00
935 3 0.00
937 1 0.00
940 78 0.02
941 220 0.05
942 332 0.07
943 41 0.01
944 154 0.03
945 7 0.00
947 2 0.00
948 210 0.05
949 183 0.04
950 308 0.07
951 226 0.05
952 367 0.08
953 676 0.15
954 919 0.20
955 42 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (954 bp):
AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGATTCTATC
AAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCATCAACGTCATGTATCCTAATGAA
GGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
AAAATCATCAATATCATTTAACCTTAGGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAA
TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
GGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
TGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTATCGTATTTA
AGAGACAAACTTTGTTTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTCGCGACACCAAAGCAT
CAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAAGGGAGAC
TATTACGAGAATCGATGCTTATCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAA
AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
GAACTTAGACCTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATG
ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
Found at i:67754 original size:316 final size:315
Alignment explanation
Indices: 67146--68101 Score: 1409
Period size: 316 Copynumber: 3.0 Consensus size: 315
67136 AAGAAAATCT
* * * * * *
67146 TTTCTTGCAACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCC
1 TTTCTTGCAAAATCAAAGCATTAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCC
* * ** ** **
67210 AATCTTGAAAACAATGGAGAATGTTATAAGAAACGATGCTTGTCTTATTTAAGGGGTGAACTTTG
66 AA-CTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTG
* * * * * * * *
67275 ATTTTATGAAAAATAAGGTAAAGAAAAGGTTTCCATGCAGAAAAGAAAATCATCAATATCATTTA
130 ATTTAAAGGAAAATAGGGCAAAG-AAAGATTTCTATGC--AAAAGAAAATCATCTATATCATTTA
* * * * *
67340 TCTTAATGAGGAGAATGTGTATATAGTGCCT-ATCACAAAATGAATGAAGATCATTACTAGAATC
192 TCCTAAT-TGGAGAATGTGTTTATAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATC
* * * *
67404 CAG-GTTTGTCTCAATTGAAGCATGAACTTAGACTTTACAAAAATTGGTGGGCAAAAAGCC
256 C-GTGTTTGTCTCATTTGAGGTATGAACATAGACTTTACAAAAATTGGTGGGCAAAAAGCC
67464 TTTCTTGCAAAATCAAAGCATTAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCC
1 TTTCTTGCAAAATCAAAGCATTAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCC
* * *
67529 AACTTCGAAAAGAATGGAGACTGTTGCGAGAATTGGTGCTTGTCTTATTTAAGGTATAAACTTTG
66 AACTT-GAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTG
67594 ATTTAAAGGAAAATAGGGCAAAGAAAGATTTCTATGCAAAAGAAAATCATCTATATCATTTATCC
130 ATTTAAAGGAAAATAGGGCAAAGAAAGATTTCTATGCAAAAGAAAATCATCTATATCATTTATCC
67659 TAATTGGAGAATGTGTTTATAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCGTG
195 TAATTGGAGAATGTGTTTATAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCGTG
* *
67724 TTTGTCACATTTGGGGTATGAACATAGACTTTACAAAAATTGGTGGGCAAAAAGCC
260 TTTGTCTCATTTGAGGTATGAACATAGACTTTACAAAAATTGGTGGGCAAAAAGCC
* *
67780 TTTCTTGCGAAATCAAAGCATTAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCT
1 TTTCTTGCAAAATCAAAGCATTAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCC
*
67845 AGCCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTG
66 A-ACTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTG
67910 ATTTAAAGGAAAATAGGGCAAAGAAAGATTTCTATGCAAAAGAAAATCATCTATATCATTTATCC
130 ATTTAAAGGAAAATAGGGCAAAGAAAGATTTCTATGCAAAAGAAAATCATCTATATCATTTATCC
*
67975 TAATTAGAGAATGTGTTTATAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCGTG
195 TAATTGGAGAATGTGTTTATAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCGTG
* * *
68040 -TTGACTCATTTGAGATAAGAACATAGACTTTACAAAAATTGGTGGG-AAAATAGCC
260 TTTGTCTCATTTGAGGTATGAACATAGACTTTACAAAAATTGGTGGGCAAAA-AGCC
68095 TTTCTTG
1 TTTCTTG
68102 TGAAACGAAA
Statistics
Matches: 584, Mismatches: 48, Indels: 15
0.90 0.07 0.02
Matches are distributed among these distances:
314 4 0.01
315 73 0.12
316 363 0.62
317 3 0.01
318 61 0.10
319 80 0.14
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (315 bp):
TTTCTTGCAAAATCAAAGCATTAACGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGCTTCCC
AACTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTGA
TTTAAAGGAAAATAGGGCAAAGAAAGATTTCTATGCAAAAGAAAATCATCTATATCATTTATCCT
AATTGGAGAATGTGTTTATAGAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCGTGT
TTGTCTCATTTGAGGTATGAACATAGACTTTACAAAAATTGGTGGGCAAAAAGCC
Found at i:73475 original size:12 final size:12
Alignment explanation
Indices: 73445--73530 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 12
73435 AAGAGAAAGA
73445 AGAGATAGGAGG
1 AGAGATAGGAGG
*
73457 -GATGATATGAGG
1 AGA-GATAGGAGG
73469 AGAGATAGGA-G
1 AGAGATAGGAGG
* *
73480 AGATAGTAGAGATAGA
1 AGAGA-TAG-G--AGG
*
73496 AGAGATAGAAGG
1 AGAGATAGGAGG
*
73508 -GATGATAGAAGG
1 AGA-GATAGGAGG
73520 AGAGATAGGAG
1 AGAGATAGGAG
73531 AGATAATAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 18
0.69 0.10 0.22
Matches are distributed among these distances:
11 9 0.16
12 35 0.61
13 5 0.09
15 4 0.07
16 4 0.07
ACGTcount: A:0.44, C:0.00, G:0.42, T:0.14
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:73480 original size:9 final size:9
Alignment explanation
Indices: 73466--73535 Score: 74
Period size: 9 Copynumber: 8.1 Consensus size: 9
73456 GGATGATATG
73466 AGGAGAGAT
1 AGGAGAGAT
73475 AGGAGAGAT
1 AGGAGAGAT
*
73484 AGTAGAGAT
1 AGGAGAGAT
*
73493 AGAAGAGAT
1 AGGAGAGAT
* *
73502 AGAAGGGAT
1 AGGAGAGAT
*
73511 --GATAGA-
1 AGGAGAGAT
73517 AGGAGAGAT
1 AGGAGAGAT
73526 AGGAGAGAT
1 AGGAGAGAT
73535 A
1 A
73536 ATAGAGAGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 3 0.06
8 5 0.10
9 43 0.84
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:73492 original size:18 final size:18
Alignment explanation
Indices: 73469--73548 Score: 76
Period size: 18 Copynumber: 4.6 Consensus size: 18
73459 TGATATGAGG
73469 AGAGATAGGAGAGATAGT
1 AGAGATAGGAGAGATAGT
* *
73487 AGAGATAGAAGAGATAGA
1 AGAGATAGGAGAGATAGT
* * *
73505 AGGGAT--GATAGA-AGG
1 AGAGATAGGAGAGATAGT
*
73520 AGAGATAGGAGAGATAAT
1 AGAGATAGGAGAGATAGT
*
73538 AGAGAGAGGAG
1 AGAGATAGGAG
73549 GGATGATAGG
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
15 7 0.15
16 4 0.08
17 5 0.10
18 32 0.67
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.12
Consensus pattern (18 bp):
AGAGATAGGAGAGATAGT
Found at i:73512 original size:51 final size:51
Alignment explanation
Indices: 73436--73542 Score: 171
Period size: 51 Copynumber: 2.1 Consensus size: 51
73426 TAGCCATCAA
* *
73436 AGAGAAAGAAGAGATAGGAGGGATGATATG-AGGAGAGATAGGAGAGATAGT
1 AGAGAAAGAAGAGATAGAAGGGATGATA-GAAGGAGAGATAGGAGAGATAAT
*
73487 AGAGATAGAAGAGATAGAAGGGATGATAGAAGGAGAGATAGGAGAGATAAT
1 AGAGAAAGAAGAGATAGAAGGGATGATAGAAGGAGAGATAGGAGAGATAAT
73538 AGAGA
1 AGAGA
73543 GAGGAGGGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
50 1 0.02
51 51 0.98
ACGTcount: A:0.48, C:0.00, G:0.39, T:0.13
Consensus pattern (51 bp):
AGAGAAAGAAGAGATAGAAGGGATGATAGAAGGAGAGATAGGAGAGATAAT
Found at i:73521 original size:42 final size:42
Alignment explanation
Indices: 73475--73563 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
73465 GAGGAGAGAT
* *
73475 AGGAGAGATAGTAGAGATAGA-AGAGATAGAAGGGATGATAGA
1 AGGAGAGATAGGAGAGATA-ATAGAGAGAGAAGGGATGATAGA
* *
73517 AGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGATGATAGG
1 AGGAGAGATAGGAGAGATAATAGAGAGAGAAGGGATGATAGA
73559 AGGAG
1 AGGAG
73564 GAGAGAAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.45, C:0.00, G:0.43, T:0.12
Consensus pattern (42 bp):
AGGAGAGATAGGAGAGATAATAGAGAGAGAAGGGATGATAGA
Found at i:73557 original size:18 final size:18
Alignment explanation
Indices: 73520--73569 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
73510 TGATAGAAGG
*
73520 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
73538 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
73556 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
73570 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.00, G:0.46, T:0.10
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:79610 original size:476 final size:478
Alignment explanation
Indices: 78534--83172 Score: 1951
Period size: 476 Copynumber: 9.8 Consensus size: 478
78524 TCATCACGAA
* * *
78534 GAGAATCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * **
78599 TCATTTGAGGCATAAACTCAGACTTTACAAAAAAATTGGT-AGGAAAAAAGCCTTTCTTATGAAA
66 TCATTTGAGGCACAAACTTAGAC-TTACACAAAAATTGGTGA-GAAAAAAGCCTTTCTTGCGAAA
* *
78663 CCAAAGCATCAATAAGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
129 CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* **
78728 ACGGGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTTTATCAAAAA
194 ACGCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAAA
* **
78793 AGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAA
259 AGGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGGAA
* * * * * * *
78858 TGTGTTTCTAGCTTCCTAGTCTTGAAAAGAATGGAGACTATTACGAGAGTCGATGCTTGTCTTAT
324 TATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACTTGTCTTAT
* * * ** *
78923 TTAAGGTATGAACTTTAATTTAGAGGAAAATAGGGCAAAGAAAAGATTTCTATGCAAAATAAAAT
389 TTAAGGTATGAACTTTAATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAAT
* * *
78988 CATCAATATCATTTATCCTTATGAG
454 CATCAATATCATATATCCATAGGAG
* * * * *
79013 GAGAATGTGTTTATAGTACCTAGTCATAAAATGAATGATGATCATTACTAGAATCCATGTTTGTA
1 GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * * *
79078 TCATTTGAGGCACGAACTTAGACCTTGC-C-AAAATTGGTGGGGAAAATGCCTTTCTTGCAAAAC
66 TCATTTGAGGCACAAACTTAGA-CTTACACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAAC
*
79141 CAAAGCATCAATATGATGTATCCTAATTAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
130 CAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
* ** * * **
79206 CGCGGATTAGTTTGAGTATTCTTGTTTGTCATATTTAAGAGACAAACTTTGATTCCATCAAAAAT
195 CGCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAAA-
* * *
79271 A-GTGGAAAGAAAAGCTTTTCTCGCGGCACCAAAGCATCAACATCATGTATCCTAATGAAAGGAA
259 AGGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGGAA
* *
79335 TATGTTT-TTGCTTCCCAGCCTTAAAAAGAATGGAGACTATTATGAGAATCAATACTTGTCTTAT
324 TATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACTTGTCTTAT
*
79399 TTAAGGTATGAACTTTGATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAAT
389 TTAAGGTATGAACTTTAATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAAT
79464 CATCAATATCATATATCCATAGGAG
454 CATCAATATCATATATCCATAGGAG
* * * *
79489 GGGAATGTGTTTATAGTG-CTCAATCAAAAAATGAGTGAAGATCATTATTAGAATCCA-GCTTCG
1 GAGAATGTGTTTATAGTGCCT-AATCAAAAAATGAATGAAGATCATTACTAGAATCCATG-TTTG
* *
79552 TCTCATTGGAGGCACAAACTTAGACTT-CACAAAAATTGGTGAGAAAAAAGCTTTTCTTGCGAAA
64 TCTCATTTGAGGCACAAACTTAGACTTACACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAA
* * * ** * * * * * ** *
79616 CCAAAGCATTAATGTCATGTATCCTAATGAGGGGAATGTGTTTTTGGCTTCCCAGGCTTGAAAAG
129 CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG-TGCCAAATCCTGAAAAG
* * * * * * *** * ** ** ** **
79681 AATG-GAGACT-GTTACGAGAATTGATACATGTCATATTTAAG-GTATGAACTTTGATTTAAAGG
193 AACGCG-GAATAG-CATGAGTATTCATGTTTCTCATACCTAAGAG-ACAAACTTTGA-TTCCATC
* * * * ** * * ** * *
79743 AAAATAGG-GCAAAGAAAAG-ATTTC-CATGCAAAAGTAAATCTTCAGTATCATTTATCCTAAT-
254 AAAAAAGGTGGAAAGAAAAGCATTTCTC--GCGACACCAAAGCATCAACACCATGTATCCTAATG
* ** * * * ** ** * * * * **
79804 -AGGAGAATGCGTTTATAG-TGCCTAATCACAAAATGAATGAAGA-TCATTACTAGAATCCATGT
317 AAAG-GAATATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACT-ATTACGAGAATCAATAC
* * * * * * * * * *
79866 TTGTCTCAATTGAGGCATGAAC-TTAGACTATACAA--AAATTGGTGAGAAA-AAATGCCTTT-C
380 TTGTCTTATTTAAGGTATGAACTTTA-A-TATA-AAGGAAAATAG-GACAAAGAAAAG-ATTTAA
* * * * ** * *
79926 TTGGAAAAGCAAAGCATCAATATGTTGTATCC-TAATGAG
440 ATGCAAAAGAAAATCATCAATATCATATATCCAT-AGGAG
* * * * ** * * ** * * * *
79965 AAGACTATGTTTATAGTGTCTAATCCTGAAAA--CACGGGGATTAGTA-TGAGTATTCATGTTTG
1 GAGAATGTGTTTATAGTGCCTAAT-CAAAAAATGAATGAAGATCATTACT-AGAATCCATGTTTG
** * * *
80027 TCAT-ATTTGAGAG-ACAAACTTTCA-TT-CTATCAAAAA-CGATG-GAAAGAAAACCTTTTCTC
64 TC-TCATTTGAG-GCACAAACTTAGACTTAC-A-CAAAAATTGGTGAGAAA-AAAGCC-TTTCT-
* * * * * * * * * * * *
80086 AG-GACACAAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGCTACCTAGTC
122 TGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA-AGACTATGTTTATGG-TGCCAAATC
* * * * ** ** * * * ** * **
80149 TTGAAAATAATG-GAGACTATTACAAG-AATCGATGCTTGC-CTTATTTACG-GTATGAACTTTG
185 CTGAAAAGAACGCG-GAATAGCATGAGTATTC-ATG-TTTCTCATACCTAAGAG-ACAAACTTTG
** * ** * ** ** ** * * *
80210 ATTTAAAGT-AAAATAGG-ACAAAG-AAAGGATTTC-CAAG-CAAAAAAAAAT--ACTCAATAGG
246 A-TTCCA-TCAAAAAAGGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCAT-GT
* * ** * * * *** ** * *
80268 A--C-AAAGAGACAAACTTTGATTCTA---T-CAAAAATGGTGGAAAGAA--AAG-C-ATTTCTT
308 ATCCTAATGAAAGGAA-TATGTTTCTAGCTTCCCAGCCT--TAAAAAGAATGGAGACTATTAC--
* * * * * * * ** *** ****
80322 GCGACACCAA-AGCATCAATGTCATGTATCCTAATGAAGGGA-TTTTGT-TTTTGGCTTCTTA-G
368 GAGA-ATCAATA-C-T---TGTC-T-TAT-TTAAGGTATGAACTTTAATATAAAGG-AAAATAGG
* ** ** * ** * * * * ** * *
80383 TC-TTGAAAAGAATGGAGACTG-TTACGAGAATCGATGC-TTGTC-T-TATTTAAAGTATG
423 ACAAAGAAAAG-ATTTA-AATGCAAAAGAAAATC-AT-CAATATCATATATCCATAGGA-G
* *** * * *** * * * * * ** *
80439 AACTTTG-ATTTAAAGGAAAAC-AAGGCAAAGAAA-GATTTCCACG--CA-AAAGAAAATCATCA
1 GAGAATGTGTTTATA-G-TGCCTAA-TCAAA-AAATGA-AT-GAAGATCATTACTAGAATC--CA
* * * * * ** * * *
80498 T-TATCATTTATCCTAT-AGG-AGAATGTGTTTATAGTGCCTA-ATCACAAAA----TGA-ATGA
58 TGT-T--TGTCTCATTTGAGGCACAA----ACT-TAG-ACTTACA-CA-AAAATTGGTGAGA-AA
* * * * * * ** * * * * * * ** *
80554 AGATCATTGC-T-AGAATCCATGTTTGTC-TCAAT-TGAGGCATGAACTTA-GACATTAAAAAAA
111 AAAGCCTTTCTTGCGAAACCA---AAG-CATCAATATGATGTAT--CCTAATGAGA--AGACTAT
* ** **** * ***** * * * * * *
80614 ATTGGTGGAAAAAAAGCCTTTCTTGTGAAAC-C--AA-AGCATCAATA-TGATGTATGTCATACT
168 GTTTATGGTGCCAAATCC--TGAAAAG-AACGCGGAATAGCATGAGTATTCATGTTTCTCATACC
* * * ***
80674 TAAGAGACAAAATTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTATGACACCAAAGC
230 TAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGC
*** * ** * * ** *
80739 ATCAATGTCATGTATCCTAATCAGGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAG
295 ATCAACACCATGTATCCTAATGAAAGGAATATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAG
* ** * * * *
80803 A-TAGTTATGAGAATTGATGCCTT-TCTTATTTAAGGGATGAACTTTGATTTTAAA-GAAAATAG
360 ACTA-TTACGAGAATCAAT-ACTTGTCTTATTTAAGGTATGAACTTT-AATATAAAGGAAAATAG
* ** * * *
80865 GGCAAAGAAAAGATTTCCATGCAAAAAAGAAAATCACCAATATCATTTATCCTTAGGA-
422 GACAAAGAAAAGATTTAAATGC--AAAAGAAAATCATCAATATCATATATCCATAGGAG
* * * * *
80923 AAGGAATGTGTTTATAGTGCCTAATCACAAAATTAATGATGATCTTTACTAGAATCCATGTTTGT
1 GA-GAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * *
80988 CTCATTTGAGGCACGAACTTAGACTT-TACAAAAATTGGTGAGAAAAAAGCCTTTCTTGTGAAAC
65 CTCATTTGAGGCACAAACTTAGACTTACACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAAC
* * * * *
81052 CAAAGCATCAATATGATGTATCATAACGAGAAGACTATGCTTATCGTGCCTAATCCTGAAAAGAA
130 CAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
* * * * * * ** * *
81117 TGGGGATTAACATGACTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAAC
195 CGCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAAAA
* *** * * * *
81182 GGTGGAAAGAAAAGC-TTTCTCGTGACACCAAAGCATCAATGTCATGTTTCATAGTGAAGGGAAT
260 GGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGGAAT
* * * * * * * * * * *
81246 GTGTTTTTGGCTTCCCAGTCTTTAAAAGAATGGAGACTATTACAAGAATCGATGCTAGCCATATT
325 ATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACTTGTCTTATT
* * * ** *
81311 TAAGGTATGAACTTTGATTTAAAGGAAAATAGGGA-AAAGAAAGGATTTCCATACAAAAGAAAAT
390 TAAGGTATGAACTTTAATATAAAGGAAAATA-GGACAAAGAAAAGATTTAAATGCAAAAGAAAAT
* * *
81375 CATCAATATCATTTATTC-TAATGAG
454 CATCAATATCATATATCCAT-AGGAG
* *
81400 GAGAATGTGTTTATAGTGCCT-ATCAAAAAATGAATGAAGATCATTACTAGAATCTAGGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * *
81464 TTATTTGAGGCACGAACTTAGACTTTACA-AAAAATTGGTGGGAAAAAATGCCTTTCTTGCGAAG
66 TCATTTGAGGCACAAACTTAGAC-TTACACAAAAATTGGTGAGAAAAAA-GCCTTTCTTGCGAAA
* * *
81528 CCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCGTGAAAAGA
129 CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* * * * * * * * *
81593 ATGGGGATTTGCGTGAGTATTCATGTTTGTCGTACTTAAGAGACAAACTTTGATTCGATCAAAAA
194 ACGCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAAA
* * * *** * ** *
81658 TGGTGGAAAGAAAAACATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATCAGGGGAT
259 AGGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGGAA
* * ** * * ** * ** *
81723 TGTGTTT-TAGCTTCCTAATCTTGAAAATAATGGAGACTGGTAAGAGAATTGATGCCTT-TCTTA
324 TATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAAT-ACTTGTCTTA
* * * * * **
81786 TTTATGGGATGAACTTTCATTTTAAA-GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
388 TTTAAGGTATGAACTTT-AATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAA
* * **
81850 AT-ATCAATATCATTTAT-CTTAATAG
452 ATCATCAATATCATATATCCATAGGAG
*
81875 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * *
81940 TAAATTGTGGCACAAACTTAGACTTTACA-AAAAATTGGTGAGAAAAAATGCCTTTCTTGCAAAA
66 TCATTTGAGGCACAAACTTAGAC-TTACACAAAAATTGGTGAGAAAAAA-GCCTTTCTTGCGAAA
* * * * * * *
82004 CCAAAGCATCAATACGATGTATCTTCATGAGAAGACTATGTTTATAGTGTCTAATTCTGAAAA-A
129 CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* * * * * * ** ** * * *
82068 GATGGGGATTAGTATGAGCATTCATGTTTGTTGTATTTGAGAGACAAACTTTGATTCTATTAAAA
194 -ACGCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAA
* * * * * *
82133 ATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGA-CATGTATCCTAATGAAGGG
258 AAGGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAA-CACCATGTATCCTAATGAAAGG
* * * ** * * * * * *
82197 AATGTGTTT-TGGCTTCCTAATCTTGAAAAGAATGGAGAATGTTATGAGAATCGATGCTTGTCTT
322 AATATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACTTGTCTT
* * * * * * * *
82261 ATTTAAGGGATTAACTTTGATTTTAATGAAAATAGG-----GCAAACA--T--A--CAAAA-AAA
387 ATTTAAGGTATGAACTTTAATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAA
* *
82314 GATCATCAATATCATTTATCC-TAATGAG
452 -ATCATCAATATCATATATCCAT-AGGAG
* * ** * * * *
82342 GAGAATGTGTTAACAGTG-CTAATCATGAAATCAATGAGGATCACTACTAGAATGCATGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* ** * * * * *
82406 TCATTTGAGCCATGAATTTAGACTT-TACAAAAATTGGTGGGAAAAATGCCATTCTTGCGAAACC
66 TCATTTGAGGCACAAACTTAGACTTACACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACC
* * * *
82470 AAAGCATCAATATCG-TGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTTAAAAGGA
131 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
* * * * * ** ** * *
82534 TGAGGATTAGTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCCATCAAAAAC
195 CGCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAAAA
* * * *** *
82599 GGTGGAAAGAAATGCTTTTCTCGCGACGCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
260 GGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGGAAT
* * * * * * * *
82664 GTGTTT-TGGCTTCACAGTCTTGAAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCCTTAT
325 ATGTTTCTAGCTTCCCAGCCTT-AAAAAGAATGGAGACTATTACGAGAATCAATACTTGTCTTAT
* * * * * ** *
82728 TTAAGCTATGAACTTTGATTTTAAGAAAAATAAGG-CAAAGAAAAGATTTCCATGTAAAAGAAAA
389 TTAAGGTATGAACTTTAATATAAAGGAAAAT-AGGACAAAGAAAAGATTTAAATGCAAAAGAAAA
* *
82792 TCATCAATATCATTTATCC-TA-AAGG
453 TCATCAATATCATATATCCATAGGA-G
* * *
82817 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCATTGCTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * ** * *
82882 TCAATTGAGGCACAGACTTAGACTT-TGCAAAAATTGGTTG-GAAAAATGCCCTTCTTGCGAAAC
66 TCATTTGAGGCACAAACTTAGACTTACACAAAAATTGG-TGAGAAAAAAGCCTTTCTTGCGAAAC
* ** * * * *
82945 CAAAGC-TACAATATCATGTATTTTAATGAGAAGACTACGTTTATAGTGCCTAATCCTAAAAAGA
130 CAAAGCAT-CAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* * * * * ** *
83009 ATGGGGATTAG--T-ACGCATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAA
194 ACGCGGAATAGCATGA-GTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAA
* * * * *** *
83071 ACGGTGGAAAGAAAAGC-TTTAATTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
258 AAGGTGGAAAGAAAAGCATTT-CTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGG
* * * * ** *
83135 AATGTGCTT-TGGCTTTCCAATCTTGAAAAGAATGGAGA
322 AATATGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGA
83173 ATGTTGTTAG
Statistics
Matches: 3191, Mismatches: 752, Indels: 440
0.73 0.17 0.10
Matches are distributed among these distances:
464 205 0.06
465 89 0.03
466 79 0.02
467 21 0.01
468 8 0.00
469 6 0.00
470 14 0.00
471 13 0.00
472 2 0.00
473 45 0.01
474 149 0.05
475 195 0.06
476 1149 0.36
477 627 0.20
478 224 0.07
479 115 0.04
480 33 0.01
481 48 0.02
482 29 0.01
483 36 0.01
484 30 0.01
485 26 0.01
486 17 0.01
487 14 0.00
488 4 0.00
489 10 0.00
490 1 0.00
491 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (478 bp):
GAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
TCATTTGAGGCACAAACTTAGACTTACACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACC
AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAAC
GCGGAATAGCATGAGTATTCATGTTTCTCATACCTAAGAGACAAACTTTGATTCCATCAAAAAAG
GTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCATCAACACCATGTATCCTAATGAAAGGAATA
TGTTTCTAGCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACTTGTCTTATTT
AAGGTATGAACTTTAATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAATCA
TCAATATCATATATCCATAGGAG
Found at i:79861 original size:317 final size:317
Alignment explanation
Indices: 79280--79976 Score: 920
Period size: 318 Copynumber: 2.2 Consensus size: 317
79270 TAGTGGAAAG
* ** * *
79280 AAAAGCTTTTCTCGCGGCACCAAAGCATCAACATCATGTATCCTAATGAAAGGAATATGTTTTTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAGGAATATGTTTTTG
* * *
79345 CTTCCCAGCCTTAAAAAGAATGGAGACTATTATGAGAATCAATACTTGTCTTATTTAAGGTATGA
66 CTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACATGTCATATTTAAGGTATGA
79410 ACTTTGATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAATCATCAATATCA
131 ACTTTGATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAATCATCAATATCA
* * * * *
79475 TATATCCATAGGAGGGGAATGTGTTTATAGTGCTCAATCAAAAAATGAGTGAAGATCATTATTAG
196 TATATCCATAAGAGGAGAATGCGTTTATAGTGCTCAATCAAAAAATGAATGAAGATCATTACTAG
79540 AATCCA-GCTTCGTCTC-ATTGGAGGCACAAACTTAGACT-TCACAAAAATTGGTGAGAA
261 AATCCATG-TTCGTCTCAATT-GAGGCACAAACTTAGACTAT-ACAAAAATTGGTGAGAA
* * * *
79597 AAAAGCTTTTCTTGCGAAACCAAAGCATTAATGTCATGTATCCTAATGAGGGGAATGTGTTTTTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAGGAATATGTTTTT-
* * * **
79662 GCTTCCCAGGCTTGAAAAGAATGGAGACTGTTACGAGAATTGATACATGTCATATTTAAGGTATG
65 GCTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACATGTCATATTTAAGGTATG
* * ** * * *
79727 AACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGTAAATCTTCAGTATC
130 AACTTTGATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAATCATCAATATC
* * *
79792 ATTTATCC-TAATAGGAGAATGCGTTTATAGTGC-CTAATCACAAAATGAATGAAGATCATTACT
195 ATATATCCATAAGAGGAGAATGCGTTTATAGTGCTC-AATCAAAAAATGAATGAAGATCATTACT
* **
79855 AGAATCCATGTTTGTCTCAATTGAGGCATGAACTTAGACTATACAAAAATTGGTGAGAA
259 AGAATCCATGTTCGTCTCAATTGAGGCACAAACTTAGACTATACAAAAATTGGTGAGAA
* * ** * *
79914 AAAATGCCTTTCTTG-GAAAAGCAAAGCATCAATATGTTGTATCCTAATGAGAAGACTATGTTT
1 AAAA-GCTTTTCTTGCG-AAACCAAAGCATCAATATCATGTATCCTAATGAGAGGAATATGTTT
79977 ATAGTGTCTA
Statistics
Matches: 328, Mismatches: 45, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
316 1 0.00
317 154 0.47
318 173 0.53
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (317 bp):
AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAGGAATATGTTTTTG
CTTCCCAGCCTTAAAAAGAATGGAGACTATTACGAGAATCAATACATGTCATATTTAAGGTATGA
ACTTTGATATAAAGGAAAATAGGACAAAGAAAAGATTTAAATGCAAAAGAAAATCATCAATATCA
TATATCCATAAGAGGAGAATGCGTTTATAGTGCTCAATCAAAAAATGAATGAAGATCATTACTAG
AATCCATGTTCGTCTCAATTGAGGCACAAACTTAGACTATACAAAAATTGGTGAGAA
Found at i:80449 original size:236 final size:235
Alignment explanation
Indices: 80036--80492 Score: 684
Period size: 236 Copynumber: 1.9 Consensus size: 235
80026 GTCATATTTG
*
80036 AGAGACAAACTTTCATTCTATCAAAAACGATGGAAAGAAAACCTTTTCTCAGGACACAAAAGCAT
1 AGAGACAAACTTTCATTCTATCAAAAACGATGGAAAGAAAACCATTTCTCAGGACACAAAAGCAT
*
80101 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTACCTAGTCTTGAAAATAATGGAGAC
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTACCTAGTCTTGAAAAGAATGGAGAC
** * *
80166 TATTACAAGAATCGATGCTTGCCTTATTTACGGTATGAACTTTGATTTAAAGTAAAA-TAGGACA
131 TATTACAAGAATCGATGCTTGCCTTATTTAAAGTATGAACTTTGATTTAAAGGAAAACAAGG-CA
80230 AAGAAAGGATTTCCAAGCAAAAAAAAATACTCAATAGGACAA
195 AAGAAA-GATTTCCAAGCAAAAAAAAATACTCAATAGGACAA
* * * * * *
80272 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCT-TGCGACACCAAAGCA
1 AGAGACAAACTTTCATTCTATCAAAAACGATGGAAAGAAAACCATTTCTCAG-GACACAAAAGCA
* * * *
80336 TCAATGTCATGTATCCTAATGAAGGGATTTTGTTTTTGGCTTCTTAGTCTTGAAAAGAATGGAGA
65 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTACCTAGTCTTGAAAAGAATGGAGA
* * *
80401 CTGTTACGAGAATCGATGCTTGTCTTATTTAAAGTATGAACTTTGATTTAAAGGAAAACAAGGCA
130 CTATTACAAGAATCGATGCTTGCCTTATTTAAAGTATGAACTTTGATTTAAAGGAAAACAAGGCA
* *
80466 AAGAAAGATTTCCACGCAAAAGAAAAT
195 AAGAAAGATTTCCAAGCAAAAAAAAAT
80493 CATCATTATC
Statistics
Matches: 198, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
235 20 0.10
236 175 0.88
237 3 0.02
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (235 bp):
AGAGACAAACTTTCATTCTATCAAAAACGATGGAAAGAAAACCATTTCTCAGGACACAAAAGCAT
CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTACCTAGTCTTGAAAAGAATGGAGAC
TATTACAAGAATCGATGCTTGCCTTATTTAAAGTATGAACTTTGATTTAAAGGAAAACAAGGCAA
AGAAAGATTTCCAAGCAAAAAAAAATACTCAATAGGACAA
Found at i:82205 original size:159 final size:157
Alignment explanation
Indices: 80676--83140 Score: 554
Period size: 159 Copynumber: 15.6 Consensus size: 157
80666 GTCATACTTA
* * * *
80676 AGAGACAAAATTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTATG-ACACCAAAGCA
1 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTTC-T-TGCAAACCAAAGCA
* * * * * *
80740 TCAATGTCATGTATCCTAATCAGGGGAATGTGTTT-TGGCTTCCCAATCTTG-AAAAGAATGGAG
64 TCAAT-ACATGTATCCTAATGA-GGGAATGTGTTTATAG-TGCCTAATCGTGAAAAAGAATGGAG
* * *
80803 A-TAGTTATGAGAATTGATGCCTTT-CT-TATTTA
126 ATTAG-TATGAGAATTCATG--TTTGTTGTATTTG
* ** * * * * **
80835 AGGGATGAACTTTGATTTTA-AAGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAAAAGAAA
1 AGAGACAAACTTTGATTCTATAA-AAAAT-GGTGGAAAGAAAAGCCTTT-CTTGC---AAACCAA
* * * * * * ** **
80897 ATCACCAATATCATTTATCCTTAGGAAAGGAATGTGTTTATAGTGCCTAATC-ACAAAATTAAT-
60 AGCATCAATA-CATGTATCCTAATG-AGGGAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATG
* * *
80960 GATGATCT-TTACT-AGAATCCATGTTTGTCT-CATTTG
123 GA-GAT-TAGTA-TGAGAATTCATGTTTGT-TGTATTTG
* * * * *
80996 AG-GCACGAACTTAGACTT-TACAAAAATTGGT-GAGAA-AAAAGCCTTTCTTGTGAAACCAAAG
1 AGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGGA-AAGAAAAGCCTTTCTTG-CAAACCAAAG
* * * * * * * * * *
81057 CATCAATATGATGTATCATAACGAGAAGACTATGCTTATCGTGCCTAATCCTG-AAAAGAATGGG
62 CATCAATA-CATGTATCCTAATGAG-GGAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGGA
** ** ** *
81121 GATTAACATGACTATTCATGTTTGTCATATTTA
125 GATTAGTATGAGAATTCATGTTTGTTGTATTTG
* * *
81154 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG-CTTTCTCGTG-ACACCAAAGCA
1 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTTCT--TGCAAACCAAAGCA
* * * * * * * * * **
81217 TCAATGTCATGTTTCATAGTGAAGGGAATGTGTTTTTGGCTTCCCAGTC-TTTAAAAGAATGGAG
64 TCAAT-ACATGTATCCTAATG-AGGGAATGTGTTTATAG-TGCCTAATCGTGAAAAAGAATGGAG
* * ** * * *** *
81281 ACTATTACAAGAA-TCGATGCTAGCCATATTTA
126 ATTAGTATGAGAATTC-ATGTTTGTTGTATTTG
** * ** * * **
81313 AG-GTATGAACTTTGATT-TA-AAGGAAAATAG-GGAAA-AGAAAGGATTTCCATACAAAAGAAA
1 AGAG-ACAAACTTTGATTCTATAA--AAAATGGTGGAAAGA-AAAGCCTTT-CTTGC-AAACCAA
* * * *
81373 ATCATCAATATCATTTATTCTAATGAGGAGAATGTGTTTATAGTGCCT-ATC--AAAAAATGAAT
60 AGCATCAATA-CATGTATCCTAATGAGG-GAATGTGTTTATAGTGCCTAATCGTGAAAAA-GAAT
* * * *
81435 GAAGATCATTACT-AGAA-TCTAGGTTTGTCT-TATTTG
122 GGAGATTAGTA-TGAGAATTC-ATGTTTGT-TGTATTTG
* * * * *
81471 AG-GCACGAACTTAGACTT-TACAAAAAATTGGTGGGAAA-AAATGCCTTTCTTGCGAAGCCAAA
1 AGAG-ACAAACTTTGA-TTCTATAAAAAA-TGGT-GGAAAGAAAAGCCTTTCTTGC-AAACCAAA
* ** * *
81533 GCATCAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCGTG-AAAAGAATGG
61 GCATCAATA-CATGTATCCTAATGAGGGAA-TGTGTTTATAGTGCCTAATCGTGAAAAAGAATGG
* * ** * * * *
81597 GGATTTGCGTGAGTATTCATGTTTGTCGTACTTA
124 AGATTAGTATGAGAATTCATGTTTGTTGTATTTG
* * * * *
81631 AGAGACAAACTTTGATTCGATCAAAAATGGTGGAAAGAAAAACATTTCTTGCGACACCAAAGCAT
1 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTTCTTGC-AAACCAAAGCAT
* * * * * *
81696 CAATGTCATGTATCCTAATCAGGGGATTGTGTTT-TAGCTTCCTAATCTTG-AAAATAATGGAGA
65 CAAT-ACATGTATCCTAATGA-GGGAATGTGTTTATAG-TGCCTAATCGTGAAAAAGAATGGAGA
* * * * *
81759 CTGGTAAGAGAATTGATGCCTTT-CT-TATTT-
127 TTAGTATGAGAATTCATG--TTTGTTGTATTTG
* ** * * * * * ** *
81789 ATGGGATGAACTTTCATTTTA-AAGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAA
1 A-GAGACAAACTTTGATTCTATAA-AAAAT-GGTGGAAAGAAAAGCCTTT-CTTGCAAACCAAAG
* * * ** * *
81851 TATCAATATCATTTATCTTAAT-AGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAA
62 CATCAATA-CATGTATCCTAATGAGG-GAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGGA
* * * **
81914 GATCATTACT-AGAATCCATGTTTGTCTAAATTGTG
125 GATTAGTA-TGAGAATTCATGTTTGT-TGTATT-TG
* * * *
81949 -G-CACAAACTTAGACTT-TACAAAAAATTGGTGAGAAA-AAATGCCTTTCTTGCAAAACCAAAG
1 AGAGACAAACTTTGA-TTCTATAAAAAA-TGGTG-GAAAGAAAAGCCTTTCTTGC-AAACCAAAG
* * * * * *
82010 CATCAATACGATGTATCTTCATGAGAAGACTATGTTTATAGTGTCTAATTC-TGAAAAAG-ATGG
62 CATCAATAC-ATGTATCCTAATGAG-GGAATGTGTTTATAGTGCCTAA-TCGTGAAAAAGAATGG
* *
82073 GGATTAGTATGAGCATTCATGTTTGTTGTATTTG
124 AGATTAGTATGAGAATTCATGTTTGTTGTATTTG
* *
82107 AGAGACAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
1 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTTCTTGCAA-ACCAAAGCAT
* * *
82172 CAATGACATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCCTAATCTTG-AAAAGAATGGAGA
65 CAAT-ACATGTATCCTAATG-AGGGAATGTGTTTATAG-TGCCTAATCGTGAAAAAGAATGGAGA
* * *
82235 AT-GTTATGAGAA-TCGATGCTTGTCT-TATTTA
127 TTAG-TATGAGAATTC-ATGTTTGT-TGTATTTG
* ** * * * * *
82266 AGGGATTAACTTTGATT-T-TAATGAAAAT--AGG---GCAAA------CATACAAA-AAAAGAT
1 AGAGACAAACTTTGATTCTATAA--AAAATGGTGGAAAGAAAAGCCTTTCTTGCAAACCAAAG--
* * * * **
82317 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTAACAGTG-CTAATCATG-AAATCAAT-GA
62 CATCAATA-CATGTATCCTAATGAGG-GAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGGA
* * * *
82379 GGATCACTACT-AGAATGCATGTTTGTCT-CATTTG
125 -GATTAGTA-TGAGAATTCATGTTTGT-TGTATTTG
** ** * * * * *
82413 AGCCATGAA-TTTAGACTT-TACAAAAATTGGTGGGAA-AAATGCCATTCTTGCGAAACCAAAGC
1 AGAGACAAACTTT-GA-TTCTATAAAAAATGGTGGAAAGAAAAGCCTTTCTTGC-AAACCAAAGC
* * *** * * * *
82475 ATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCT-TAAAAGGAT-GAG
63 ATCAATA-CATGTATCCTAATGAG-GGAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGGA-
* *
82538 GATTAGTATGAGTATTCATGTTTGTTGTATTTA
125 GATTAGTATGAGAATTCATGTTTGTTGTATTTG
* * * * * * * **
82571 AGACACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAATGCTTTTCTCGCGACGCCAAAGCAT
1 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTTCTTGC-AAACCAAAGCAT
* * *
82636 CAATGTCATGTATCCTAATGAAGGGAATGTGTTT-T-G-GCTTCACAGTCTTGAAAAAGAATGGA
65 CAAT-ACATGTATCCTAATG-AGGGAATGTGTTTATAGTGCCT-A-A-TCGTGAAAAAGAATGGA
* ** * * *
82698 GACT-GTTACAAGAA-TCAATGCTTGCCT-TATTTA
125 GATTAG-TATGAGAATTC-ATGTTTG-TTGTATTTG
** ** * * * * * * ** *
82731 AGCTATGAACTTTGATTTTA-AGAAAAATAAG-GCAAAGAAAAG-ATTTCCATGTAAAAGAAAAT
1 AGAGACAAACTTTGATTCTATA-AAAAAT-GGTGGAAAGAAAAGCCTTT-CTTG-CAAACCAAAG
* * ** * *
82793 CATCAATATCATTTATCCTAAAG-GGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAA
62 CATCAATA-CATGTATCCTAATGAGG-GAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGGA
* * * * *
82856 TATCA-T-TGCTAGAATCCATGTTTGTCT-CAATTG
125 GATTAGTATG--AGAATTCATGTTTGT-TGTATTTG
* * ** * * *
82889 AG-GCACAGACTTAGACTT-TGCAAAAATTGGTTGG-AA-AAATGCCCTTCTTGCGAAACCAAAG
1 AGAG-ACAAACTTTGA-TTCTATAAAAAATGG-TGGAAAGAAAAGCCTTTCTTGC-AAACCAAAG
** * * ** *
82950 C-TACAATATCATGTATTTTAATGAGAAGACTACGTTTATAGTGCCTAATCCT-AAAAAGAATGG
62 CAT-CAATA-CATGTATCCTAATGAG-GGAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGG
* * * ** *
83013 GGATTAGTA--CGCATTCATGTTTGTCATATTTA
124 AGATTAGTATGAGAATTCATGTTTGTTGTATTTG
* * *
83045 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG-CTTTAATTGCAACACCAAAGCA
1 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTT-CTTGCAA-ACCAAAGCA
*
83109 TCAATGTCATGTATCCTAATGAAGGGAATGTG
64 TCAAT-ACATGTATCCTAATG-AGGGAATGTG
83141 CTTTGGCTTT
Statistics
Matches: 1648, Mismatches: 463, Indels: 392
0.66 0.18 0.16
Matches are distributed among these distances:
146 9 0.01
147 52 0.03
148 40 0.02
149 5 0.00
151 2 0.00
154 4 0.00
155 8 0.00
156 46 0.03
157 182 0.11
158 421 0.26
159 500 0.30
160 254 0.15
161 113 0.07
162 11 0.01
163 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (157 bp):
AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCCTTTCTTGCAAACCAAAGCATC
AATACATGTATCCTAATGAGGGAATGTGTTTATAGTGCCTAATCGTGAAAAAGAATGGAGATTAG
TATGAGAATTCATGTTTGTTGTATTTG
Found at i:84436 original size:158 final size:155
Alignment explanation
Indices: 83822--84513 Score: 462
Period size: 158 Copynumber: 4.5 Consensus size: 155
83812 AAACTTAGAC
* * * * *
83822 TTTACAAAAAATTGGTGGAAA-AAAAACCTTTGTTGCGAAACCAAAGCATTAATATGATGTATCC
1 TTTAC-AAAAATTGGTGGAAAGAAAAACATTTCTTGTGAAACCAAAGCATCAATATCATGTATCC
* * *
83886 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAACGGGGATTAGTATAAGTATTCTT
65 TAATGAGAAGAATATGTTTATGGTGCCTAATCCTG-AAAAAATGGGGATTAGTATAAGTATTCAT
*
83951 GTTTGTCGCACTTATGAGACAAACTTTGA
129 GTTCGTC-CACTTATGAGACAAA-TTTGA
** * *
83980 TTCTATCAAAAA-TGGTGGAAAGAAATGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 TT-TA-CAAAAATTGGTGGAAAGAAAAACATTTCTTGTGAAACCAAAGCATCAATATCATGTATC
* * * * * * * * *
84044 CTAATGA-AGGGAATGTGTTT-TGGCTTCCCAATCTTCAAAAAA---GAATGGAG-A-ATGT-TT
64 CTAATGAGA-AGAATATGTTTATGG-TGCCTAATCCTGAAAAAATGGGGAT-TAGTATAAGTATT
* * * * *
84101 --TG-TC-T-TATTTAAGGGACGATATTTGA
126 CATGTTCGTCCACTTATGAGAC-AAATTTGA
* * * * ** * *
84127 TTTTGAGAAAAATAT-G-GCAAAGAAAAA-ATTTTCATGTAAAAGAAAATCATCAATATCATTTA
1 -TTT-ACAAAAAT-TGGTGGAAAGAAAAACA-TTTCTTGTGAAACCAAAGCATCAATATCATGTA
* * ** * * * *
84189 TCCTAAT-AGGAA-AATGTGTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTATTAGA
62 TCCTAATGA-GAAGAATATGTTTATGGTGCCTAATC-CTGAAAA--AATGGGGATTAGTATAAGT
* * * *
84250 ATCCATGTTTGTCTAATT-TGAGGCACAAATTTAGA
123 ATTCATGTTCGTCCACTTATGA-G-ACAAATTT-GA
* * * * *
84285 CTTTACAAAAAATTGGTGGAAA-AAAAACCTTTGTTGCGAAACCAAAGCATTAATATGATGTATC
1 -TTTAC-AAAAATTGGTGGAAAGAAAAACATTTCTTGTGAAACCAAAGCATCAATATCATGTATC
*
84349 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAATGGGGATTAGTATAAGTATTCAT
64 CTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAAATGGGGATTAGTATAAGTATTCAT
84414 GTTCGTCGCACTTATGAGACAAACTTTGA
129 GTTCGTC-CACTTATGAGACAAA-TTTGA
* * *
84443 TTCTATCAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 TT-TA-CAAAAATTGGTGGAAAGAAAAACATTTCTTGTGAAACCAAAGCATCAATATCATGTATC
84507 CTAATGA
64 CTAATGA
84514 AGGGAATGTG
Statistics
Matches: 398, Mismatches: 90, Indels: 92
0.69 0.16 0.16
Matches are distributed among these distances:
145 4 0.01
146 18 0.05
147 63 0.16
148 7 0.02
149 3 0.01
150 4 0.01
151 3 0.01
152 1 0.00
153 2 0.01
154 5 0.01
155 5 0.01
156 4 0.01
157 23 0.06
158 153 0.38
159 95 0.24
160 8 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (155 bp):
TTTACAAAAATTGGTGGAAAGAAAAACATTTCTTGTGAAACCAAAGCATCAATATCATGTATCCT
AATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAAATGGGGATTAGTATAAGTATTCATGT
TCGTCCACTTATGAGACAAATTTGA
Found at i:84763 original size:477 final size:474
Alignment explanation
Indices: 83205--85147 Score: 2399
Period size: 476 Copynumber: 4.1 Consensus size: 474
83195 CCTTATTTAA
* * * * * *
83205 GGCAAAGAAAATATCTCCATGTAAAAGAAAATTATCAATATCATTTATCCTAGTGGGAGAATGTG
1 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAGGAAAATGTG
* * * * * *
83270 TATATAATGCCTAATCATAAAATGAATGATGATAATTACTAGAATCCATGATTGTC--ATTTGAG
66 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAG
** * * *
83333 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAA
131 GCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAAACCTTTCTTGCGAAACCAAAGCATCAA
* *
83398 TATGATGTATCCTAATGAGAAGACTATGTTTATTGTGCCTAATCCT-AAACAGAACGAGGATTAG
196 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-A-AACGGGGATTAG
* ** * * * *
83462 TATGAGTATTCATGTTTGTCATATTTAAAAGACAAACTTCGATTCTATCAAAAACGGTGGAAAGA
259 TATAAGTATTCATGTTTGTCGCACTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
* ** * * *
83527 AAAGCTTTTCTTGCAATACCAAAGCATCAATGTTATGTTTCCTAATGAAGGGAATGTGTTTTTGG
324 AAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
* * * *
83592 CTTCCCAGTCTTGAAAAGAATGGAGACTGTTATGAGAATTGATGCTTATCTTATTTAAGGTG-TG
389 CTTCCCAATCTTAAAAAGAATGGAGAATGTTATGAGAA-TGATGCTTGTCTTATTTAAGG-GATG
** * * * *
83656 AGCTTTTATTTGAAGGACAAAAG
452 ATATTTGATTTTAAGGAAAAAAT
* * * * * *
83679 GGTAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATGT
1 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAAT-AGGAAAATGT
* * * *
83744 G--TATAGTGCCTAATCACAAAAT-AAGTTAAGATCTTTACTAGAATCCATGTTTATCTCATTTG
65 GTTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTTGTCTAATTTG
*
83806 AGGCACAAACTTAGACTTTACAAAAAATTGGTGGAAAAAAAACCTTTGTTGCGAAACCAAAGCAT
129 AGGCACAAACTTAGACTTTAC-AAAAATTGGTGGAAAAAAAACCTTTCTTGCGAAACCAAAGCAT
*
83871 TAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAACGGGGATT
193 CAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAAACGGGGATT
* *
83936 AGTATAAGTATTCTTGTTTGTCGCACTTATGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
257 AGTATAAGTATTCATGTTTGTCGCACTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
*
84001 GAAATGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTT
322 GAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* * *
84065 GGCTTCCCAATCTT-CAAA-AA---AGAATG----GAGAATG-T-TTTGTCTTATTTAAGGGACG
387 GGCTTCCCAATCTTAAAAAGAATGGAGAATGTTATGAGAATGATGCTTGTCTTATTTAAGGGATG
*
84119 ATATTTGATTTTGA-GAAAAATAT
452 ATATTTGATTTTAAGGAAAAA-AT
* *
84142 GGCAAAGAAAAAATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAGGAAAATGTG
1 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAGGAAAATGTG
*
84207 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTAATTTGAG
66 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAG
* * *
84272 GCACAAATTTAGACTTTACAAAAAATTGGTGGAAAAAAAACCTTTGTTGCGAAACCAAAGCATTA
131 GCACAAACTTAGACTTTAC-AAAAATTGGTGGAAAAAAAACCTTTCTTGCGAAACCAAAGCATCA
*
84337 ATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAATGGGGATTAGT
195 ATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAACGGGGATTAGT
* *
84402 ATAAGTATTCATGTTCGTCGCACTTATGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
260 ATAAGTATTCATGTTTGTCGCACTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
84467 AAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGC
325 AAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGC
* * *
84531 TTCCCAATCTTCAAAAAAGAATGGAGAATGTTTTGAGAAAAGACGCTTGTCTTATTTAAGGGATG
390 TTCCCAATCTT--AAAAAGAATGGAGAATGTTATGAG-AATGATGCTTGTCTTATTTAAGGGATG
84596 ATATTTGATTTTAA-GAAAAATAT
452 ATATTTGATTTTAAGGAAAAA-AT
84619 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAGGAAAATGTG
1 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAGGAAAATGTG
*
84684 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTAATTTGAG
66 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAG
* * ** * ** * *
84749 GCACGAACTTAGACTTTACAAATATTTTTGGGAAAAATCCCTTTCTTGCGAAACCAAATCACCAA
131 GCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAAACCTTTCTTGCGAAACCAAAGCATCAA
* * * * **
84814 TGTCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTAAAAAAAACTCGGATTAGT
196 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAAACGGGGATTAGT
* * ** * * * * ** *
84879 ATGAGCATTGTTGTGTGTC-CAATTTAAGAGATAAACTTTGATTCCATCAAAAAAAGTTGAAAGA
260 ATAAGTATTCATGTTTGTCGC-ACTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
* ** * * * * *
84943 AAAGCTTTTCTCATGACACCAAAGCGTCAATGTCTTGTATCCTAATTAAAGAAATGTGTTTTTGG
324 AAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
* * * *** ** ** **
85008 CTTCCTAAACTTGAAAAGAATGGAGACCATTACAAGAATCGATGCTTCCCTTATTTAAGATATGA
389 CTTCCCAATCTTAAAAAGAATGGAGAATGTTATGAGAAT-GATGCTTGTCTTATTTAAGGGATGA
85073 -ACTTTGA-TTTAATGGAAAAAA-
453 TA-TTTGATTTTAA-GGAAAAAAT
* * * ** *
85094 GGTAGAGAAAGGATTTCCATACAAAAGAAAATCATTAATATCATTTATCCTAAT
1 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAAT
85148 GGGGAGAATG
Statistics
Matches: 1295, Mismatches: 141, Indels: 65
0.86 0.09 0.04
Matches are distributed among these distances:
462 16 0.01
463 227 0.18
464 168 0.13
465 4 0.00
466 8 0.01
467 2 0.00
470 11 0.01
472 2 0.00
473 45 0.03
474 51 0.04
475 110 0.08
476 327 0.25
477 305 0.24
478 19 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAGGAAAATGTG
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAG
GCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAAACCTTTCTTGCGAAACCAAAGCATCAA
TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAACGGGGATTAGTA
TAAGTATTCATGTTTGTCGCACTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
AGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCT
TCCCAATCTTAAAAAGAATGGAGAATGTTATGAGAATGATGCTTGTCTTATTTAAGGGATGATAT
TTGATTTTAAGGAAAAAAT
Found at i:85573 original size:405 final size:405
Alignment explanation
Indices: 84788--85968 Score: 1800
Period size: 405 Copynumber: 2.9 Consensus size: 405
84778 GGGAAAAATC
* ** * *
84788 CCTTTCTTGCGAAACCAAATC-AC-CAATGTCATGTATCCTAATGAGAAGACTATGTTTATAGTG
1 CCTTTCTTGCGAAACCAAAGCTACGTTATG--ATGTATCCTAATAAGAAGACTATGTTTATGGTG
* * * ** * ** * *
84851 CCTAATCCTAAAAAAAACT-CGGATTAGTATGAGCATTGTTGTGTGTCCAATTTAAGAGATAAAC
64 CCTAATCCTAAAAAGAA-TAAGGATTAGTATGAGTATTCATGTTTGTCGTACTT-AGAGACAAAC
* ** * * * *
84915 TTTGATTCCATCAAAAAAAGTTGAAAGAAAAGC-TTTTCT-CATGACACCAAAGCGTCAATGTCT
127 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCCTGCA--ACACCAAAGCATCAATGTCA
* * ** ** **
84978 TGTATCCTAATTAAAGAAATGTGTTTTTGGCTTCCTAAACTTGAAAAGAATGGAGACCATTACAA
190 TGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTATGA
** * * * * *
85043 GAATCGATGCTTCCCTTATTTAAGATATGAACTTTGATTTAATGGAAAAA-A-GGTAGAGAAAGG
255 GAATCGATGCTTGTCTTATTTAAGTTATGAACTTTGATTTAA-AGAAAAATAGGGCAAAGAAAAG
* *
85106 ATTTCCATACAAAAGAAAATCATTAATATCATTTATCCTAATGGGGAGAATGTTTTTTAGAGTTT
319 ATTTTCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGGGGAGAATGTTTTTTAGAGTTT
85171 ACAAAAATTTGTAAGAAGAAAG
384 ACAAAAATTTGTAAGAAGAAAG
85193 CCTTTCTTGCGAAACCAAAGCTACGTTATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCC
1 CCTTTCTTGCGAAACCAAAGCTACGTTATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCC
* *
85258 TAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTTGTACTTAGAGACAAACTTTG
66 TAATCCTAAAAAGAATAAGGATTAGTATGAGTATTCATGTTTGTCGTACTTAGAGACAAACTTTG
85323 ATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCCTGCAACACCAAAGCATCAATGTCATGTATC
131 ATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCCTGCAACACCAAAGCATCAATGTCATGTATC
*
85388 CTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTATGAGAATCG
196 CTAATGAAAGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTATGAGAATCG
*
85453 ATGCTTGTCTTATTTAAGTTATGAACTTTGATTTAAAGAAAAATAGGGCAAAGAAAATATTTTCA
261 ATGCTTGTCTTATTTAAGTTATGAACTTTGATTTAAAGAAAAATAGGGCAAAGAAAAGATTTTCA
*
85518 TGCAAAAGAAAATTATTAATATCATTTATCCTAATGGGGAGAATGTTTTTTAGAGTTTACAAAAA
326 TGCAAAAGAAAATCATTAATATCATTTATCCTAATGGGGAGAATGTTTTTTAGAGTTTACAAAAA
85583 TTTGTAAGAAGAAAG
391 TTTGTAAGAAGAAAG
*
85598 CCTTTCTTGCGAAACCAAAGCTACGTTATGATGTATGCTAATAAGAAGACTATGTTTATGGTGCC
1 CCTTTCTTGCGAAACCAAAGCTACGTTATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCC
85663 TAATCCTAAAAAGAATAAGGATTAGTATGAGTATTCATGTTTGTCGTACTTAGAGACAAACTTTG
66 TAATCCTAAAAAGAATAAGGATTAGTATGAGTATTCATGTTTGTCGTACTTAGAGACAAACTTTG
* *
85728 ATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCCTGCGACACCACAGCATCAATGTCATGTATC
131 ATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCCTGCAACACCAAAGCATCAATGTCATGTATC
85793 CTAATGAAAGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTATGAGAATCG
196 CTAATGAAAGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTATGAGAATCG
85858 ATGCTTGTCTTATTTAAGTTATGAACTTTGATTTAAAGAAAAATAGGGCAAAGAAAAGATTTTCA
261 ATGCTTGTCTTATTTAAGTTATGAACTTTGATTTAAAGAAAAATAGGGCAAAGAAAAGATTTTCA
* * *
85923 TGCAAAAGAAAATCATTAATACCATTTATCCTTATGAGGAGAATGT
326 TGCAAAAGAAAATCATTAATATCATTTATCCTAATGGGGAGAATGT
85969 GTTTATAGTA
Statistics
Matches: 715, Mismatches: 54, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
403 6 0.01
404 153 0.21
405 549 0.77
406 4 0.01
407 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (405 bp):
CCTTTCTTGCGAAACCAAAGCTACGTTATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCC
TAATCCTAAAAAGAATAAGGATTAGTATGAGTATTCATGTTTGTCGTACTTAGAGACAAACTTTG
ATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCCTGCAACACCAAAGCATCAATGTCATGTATC
CTAATGAAAGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTATGAGAATCG
ATGCTTGTCTTATTTAAGTTATGAACTTTGATTTAAAGAAAAATAGGGCAAAGAAAAGATTTTCA
TGCAAAAGAAAATCATTAATATCATTTATCCTAATGGGGAGAATGTTTTTTAGAGTTTACAAAAA
TTTGTAAGAAGAAAG
Found at i:87433 original size:477 final size:477
Alignment explanation
Indices: 86300--91794 Score: 7451
Period size: 477 Copynumber: 11.6 Consensus size: 477
86290 TTGGCTTCCC
* *
86300 AGACTGTTACGAG--TCGATGTTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* *
86363 GCAAAGGAAAGATTTCCATGC-AAA-AAAATCATCAATATCATTTTATCCCT-GTGAGGAGAATG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA-TTTAT-CCTAATGAGGAGAATG
* * *
86425 TGTTTATAATGCCTATTCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
129 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
** * * * *
86490 AGGCCCGAACTTAGACCTTACGAAAATTGGTGGGAAAAATGCCTTTCTTACGAAACTAAAGCATC
194 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * * * * *
86555 AATATCATGTATTACTGTAATAAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGGATGAGGA
259 AATATCGTGTA-T-C-CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGA
* * * * *
86620 TTAGTAAGAGTATTCTTTTTTGTTGTATTTAAGACATAAACTTTGATTCTATCAAAAATGGTGGA
321 TTAGTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * *
86685 AAGAAAAGCTTTTCTTC-TGACACCAAAGCATCAATGTCATCTTTCCTAATCAAGGGAATGTGTT
386 AAGAAATGCTTTTC-TCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* *
86749 TTTGGCTTCCTAGTCTTGAAAAGAGTGG
450 TTTGGCTTCCCAGTCTTGAAAAGAATGG
* * * * *
86777 AAACTGTTTCGAGAAATGGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATTG
1 AGACTGTTACGAG-AATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAG
* * *
86842 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTATCCTTATGAGGGGAATGT
65 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
86907 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGA
130 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * *
86972 GGCATGAACATAGACTTTACGAAAATTAGTAGGAAAAATGCCTTTCTTACGAAACCAAAGCATCA
195 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
* * *
87037 ATATTGTGTATCCTAATGAGAATACTATGTTTATGGTGCCTAATCCTAAAAAGAACGAGGATTAG
260 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAG
* *
87102 TATGAGTATTCATGTTTGTCGTATTTAAGACACAAACTTTGATTCTATAAAAAACGGTGGAAAGA
325 TATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* ** *
87167 AATGCTTTTCTCGCGACACAAAAGCATCAATGTCAACTAT-CTGAATGAAGGGAATGTGTTTTTA
390 AATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTTTTG
**
87231 GCTTCTTAGTCTTGAAAAGAATGG
454 GCTTCCCAGTCTTGAAAAGAATGG
* * *
87255 AGACTGTTACAAGAATCGATGCTTGCCTTATTTAAAGTATGAACTTTCATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * *
87320 ACAAAGAAAGGATTTCCATGCAAAAGAAAAT-ACTCAATATCATTTATCTTAATGAGGAGAATGT
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGT
*
87384 GTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
130 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* *
87449 GGCATGAACTTAGGCTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAGCATCA
195 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
* * * * *
87514 ATAT-GACGTATCCTAATGAAAAGACTATATTTA-AGTGTCTAATCCTAAAAAG-ATGAGGATTA
260 ATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTA
* * *
87576 GTATGAGTATTCATGTTTGTCGTATTTGAGACACAAACTTTGATTCTATCAAAAAACGATGGAAA
324 GTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATC-AAAAACGGTGGAAA
* * * *
87641 GAAATGCTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAGTGTG-TTTT
388 GAAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* *
87705 GGCTTCCTAATCTTGAAAAGAATGG
453 GGCTTCCCAGTCTTGAAAAGAATGG
* * * * * * *
87730 AGAATGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAATGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* *
87795 GC------AA-A----CATACAAAA-AAAGATCATCAATATCATTTATCCTAATGAAGAGAATGT
66 GCAAAGAAAAGATTTCCATGCAAAAGAAA-ATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
87848 GTTTACAGTG-CTAATCACGAAATCAATGAAGATCATTACTAGAATGCATGTTTGTCTCATTTGA
130 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * *
87912 GCCATGAATTTAGACTTTACAAAAATTGGTGGGAAAAATGCCATTCTTGTGAAACCAAAGCATCA
195 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
87977 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGGATGAGGATGAG
260 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-TAAAA--A-GA--ATGAG
*
88042 GATTAGTATGAGGATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTG
319 GATTAGTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTG
*
88107 GAAAGAAATGCTTTTCTCGCGACGCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-
384 GAAAGAAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
*
88171 TTTTGGCTTCACAGTCTTGAAAAAGAATGG
449 TTTTGGCTTCCCAGTCTTG-AAAAGAATGG
* * *
88201 AGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGCTATGAACTTTGATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * *
88266 GCAAATG-AAGGATTTTCATGCAAAAGAAAATTC-TCAATATAATTTATCCTAATGAGGAGAATG
66 GCAAA-GAAAAGATTTCCATGCAAAAGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATG
* * * *
88329 TGTTTACAGTG-CTAATCACGAAATCAATGAAGATCATTACTAGAATGCATGTTTGTCTCATTTG
129 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * **
88393 AGCCATGAATTTAGACTTTACAAAAATTGGTGGGAAAAATGCCATTCTTATGAAACCAAAGCATC
194 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* *
88458 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGGATGAGGATTA
259 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTA
*
88523 GTATGAGGATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAG
324 GTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAG
*
88588 AAATGCTTTTCTCGCGACGCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTG
389 AAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
*
88652 GCTTCACAGTCTTGAAAAAGAATGG
454 GCTTCCCAGTCTTG-AAAAGAATGG
* * *
88677 AGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGCTATGAACTTTGATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * *
88742 GCAAATG-AAGGATTTTCATGCAAAAGAAAATTC-TCAATATAATTTATCCTAATGAGGAGAATG
66 GCAAA-GAAAAGATTTCCATGCAAAAGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATG
88805 TGTTTATAGTG-CTAATCACAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
129 TGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
88869 GAGGCTTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCATTCTTGCGAAACCAAAGCTT
193 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * *
88934 CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATGAGGATT
258 CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATT
*
88999 AGTATGAGTATTCATTTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAA
323 AGTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * *
89064 GAAAAGCTTTTCTCGTGACACCAAAGCATCAATGTCATGTTTTCTAATCAAGGGAATGTGTTTTT
388 GAAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
89129 GGCTTCCCAGTCTTGAAAAGAATGG
453 GGCTTCCCAGTCTTGAAAAGAATGG
* * *
89154 AGACTACTT-CGAGAATGGATGCTT-CTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATT
1 AGACT-GTTACGAGAATCGATGCTTGC-CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATA
** * * * * *
89217 GGGCAAAGAAAAGATTTCCATGTTAAAGAAACTTATCAGTATCATTTATCCTTATTAGGAGAATG
64 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* *
89282 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAAAATCCATGTTTGTCTCATTTG
129 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * *
89347 AGGCACGAACTTAGACTTTACGAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATC
194 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * * * *
89412 AATATCCTGTATCCTAATGAGCATACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAATA
259 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTA
* * * * * *
89477 GTATGAGTATTCATTTTTGTTGAATTTAACACACAAACTCTAATTCTATCAAAAATGGTGGAAAG
324 GTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAG
** **
89542 AAATGCTTTTCTCATGACAAAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
389 AAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
*
89607 GCTTCCTAGTCTTGAAAAGAATGG
454 GCTTCCCAGTCTTGAAAAGAATGG
*
89631 AGACTATTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * * * *
89696 ACAAAGAAAGGATTTCCATGCAAAA-AGAAAT-ACTCAATATCAATAATCTTAATGAGGAGAATG
66 GCAAAGAAAAGATTTCCATGCAAAAGA-AAATCA-TCAATATCATTTATCCTAATGAGGAGAATG
89759 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
129 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
89824 AGGCATGAACTTAGACTTTGCAAAAATTGGTTGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
194 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * * * *
89889 AATATCTTGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGGATGAGGATTT
259 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTA
* * * * * *
89954 GTATGAGTATTCATGTTTGTTGAATTTAAGACACAAAGTTCGATTTTATCAAAAACGATGAAAAG
324 GTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * * * * *
90019 AAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTTTCCTAATGAAGGGAATGGGTTTTTG
389 AAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
*
90084 GCTTCCCCA-TCTTGAAAGGAATGG
454 GCTT-CCCAGTCTTGAAAAGAATGG
* ** * * *
90108 AGACCGTTTTGAGAATTGATGCTTGTCTTATTTAAGGTATAAACTTTGATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * *
90173 GCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATTATTTATCCTTATGAGGAGAATGTG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * *
90238 TTTATAGTGCCTAATCACAAAATGAATAAAAATCATTACTAGAATCCGA-GTTTGTCTCAATTGA
131 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGA
* * *
90302 GGCATGAACTTAGACTTTACAAAAATTGGTGTGGAAAAA-GCCTTTCTGGCAAAACGAAAGCATC
195 GGCATGAACTTAGACTTTACAAAAATTGGTG-GGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * * * *
90366 AATATCATGTATACTAATAAGAAGA-T-TGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTA
259 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTA
* * ** * * *
90429 GTTTGAGTATACATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAAG
324 GTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * ** *
90494 AAATGCTTTTCTTGCTACACCAAAGCATCAATGTTTTGTATCCTAACGAAGGGAATGTGTTTTTG
389 AAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
* * *
90559 GCTTCCCATTCTCGAAAAGAGTGG
454 GCTTCCCAGTCTTGAAAAGAATGG
* * * * *
90583 AGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACCTTGATTTTAATGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* *
90648 GCAAAGAAAAGATTTCTATGCAAAAG-AAATCATCAATATCATTTATCCTTATGAGGAGAATGTG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * * * *
90712 TTTACAGTCCCTAATCACAAAATGAATGAAGATCATTACTAGGATGCATGTTTGCCTCATTTGAG
131 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * *
90777 GTATGAACTTAGACTTTACGAAAATTGGTGGGAAAAATG-CTTTCTTGCGAAACCAAAGTATTAA
196 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAA
* * *
90841 TATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAGAAT-AGGGATTAC
261 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGA-GGATTAG
* * * * * *
90904 TATGATTATTCATGTTTGTCGTATTTAGGACACAAACTTTGATTCTAACAAAATCGATGGAAAGA
325 TATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
*
90969 AATGCTTTTCTCGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
390 AATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
*
91034 CTTCCCAATCTTGAAAAGAATGG
455 CTTCCCAGTCTTGAAAAGAATGG
* *
91057 AGACTGTTACAAGAATCGATACTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
* * *
91122 GCAAAGAAAGGAATTCCATGCAAAAGAAAA-AACTCAATATCATTTATCCTAATGAGGAGAATGT
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
91186 GGTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTATTAGAATCCATATTTGTCTCATTTGA
130 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * * * *
91251 AGCATAAAATTAGACTTTACAAAAATTGATAGGAAAAATGCCTTTCTTGCGAAACCAAACCACCA
195 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
* * * * * *
91316 ATAT-GATGTATCCTAAGGAGAAGACTATGTTTATGTTGCGTAGTCCTGAAAAGAATGGGGATTA
260 ATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTA
* ** * *
91380 GTATGAGTATTCTTGTTTGTCATATTTAAGAGACAAACTTTGATTCCA-CAAAAAACGG-GAGAA
324 GTATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATC-AAAAACGGTG-GAA
* * * *
91443 AGAAAAGCTTTTCTCCCAACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTG-TTT
387 AGAAATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * **
91507 TGGCTTCCTAATCTTGAAAATAATAA
452 TGGCTTCCCAGTCTTGAAAAGAATGG
* * * * * * * *
91533 AGACTATTACGTGAATCAAAGCTTGGCTTATTTAAAGG-ATGAACTTTTATTTTAAGGAAAATAT
1 AGACTGTTACGAGAATCGATGCTTGCCTTATTT-AAGGTATGAACTTTGATTTAAAGGAAAATAG
* * * * * * *
91597 GGTAAATAAAAGATTTTCTTGCAAAAGTAAATCGTCAATATCATTTACCCTAATGAGGAGAATGT
65 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
91662 GTTTATAGTACCTAATCCCAAAATGAATGAAGATCATTACTAGAATTCTTGTATGTCTCATTTGA
130 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* *
91727 GGCATGAACTTAGACTTTACGAAAATTGGTGGG-AAAATACCTTTCTTGCGAAACCAAAGCATCA
195 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
91791 ATAT
260 ATAT
91795 GGTGCCTAAT
Statistics
Matches: 4491, Mismatches: 458, Indels: 140
0.88 0.09 0.03
Matches are distributed among these distances:
463 143 0.03
464 59 0.01
465 6 0.00
467 1 0.00
468 2 0.00
469 1 0.00
470 84 0.02
471 124 0.03
473 49 0.01
474 354 0.08
475 553 0.12
476 674 0.15
477 1755 0.39
478 231 0.05
479 2 0.00
480 71 0.02
481 149 0.03
482 228 0.05
483 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
AGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGG
GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAA
TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGT
ATGAGTATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
ATGCTTTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGC
TTCCCAGTCTTGAAAAGAATGG
Found at i:88316 original size:160 final size:156
Alignment explanation
Indices: 88133--88811 Score: 352
Period size: 160 Copynumber: 4.3 Consensus size: 156
88123 TCGCGACGCC
* *
88133 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCACAGTCTTGAAAAAGA
1 AAAGCATCAATATAATGTATCCTAATG-AGGGAATGTGTTTATGGCTTCACAGTCTTG-AAAAGA
88197 ATGGAGACT-GTTACAAGAATCAATGCTTGCCTTATTTAAGCTATGAACTTTGATTTA-AAGGAA
64 ATGGAGACTAGTTACAAGAATC-ATGCTTGCCTTATTTAAGCTATGAACTTTGATTTACAA--AA
88260 AATAGGGCAAATGAAGGATTTTCATGCAAAAGA
126 AATAGGGCAAA-GAAGGATTTTCATGC-AAAGA
* * * ** *
88293 AAATTC-TCAATATAATTTATCCTAATGAGGAGAATGTGTTTACAGTGC-T-A-A-TCACGAAAT
1 AAA-GCATCAATATAATGTATCCTAATGAGG-GAATGTGTTTA-TG-GCTTCACAGTCTTGAAAA
* * * * * * * *
88353 CAATGAAGA-TCA-TTACTAGAATGCATGTTTGTCTCATTTGAGCCATGAA-TTTAGACTTTACA
62 GAATGGAGACT-AGTTACAAGAAT-CATGCTTGCCTTATTTAAGCTATGAACTTT-GA-TTTACA
* * * * **
88415 AAAATTGGTGGGAAA-AATGCCATTCTT-ATG-AAACC
123 AAAAATAG-GGCAAAGAA-G-GATT-TTCATGCAAAGA
** * * * * *
88450 AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG-TGC-CTAATCCTT-AAAAG
1 AAAGCATCAATATAATGTATCCTAATGAG-GGAATGTGTTTATGGCTTCAC-AGT-CTTGAAAAG
* * * * * * * **
88512 GAT-GAGGATTAG-TATGAGGATTCATGTTTG-TTGTATTTAAGAC-ACAAACTTTGATTCTATC
63 AATGGA-GACTAGTTA-CAAGAATCATGCTTGCCT-TATTTAAG-CTATGAACTTTGATT-TA-C
* * * * * * *
88573 -AAAAA-CGGTGGAAAGAAATGCTTTTC-TCGCGACGCC
122 AAAAAATAGG-GCAAAG-AAGGATTTTCAT-GCAAAG-A
* *
88609 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCACAGTCTTGAAAAAGA
1 AAAGCATCAATATAATGTATCCTAATG-AGGGAATGTGTTTATGGCTTCACAGTCTTG-AAAAGA
88673 ATGGAGACT-GTTACAAGAATCAATGCTTGCCTTATTTAAGCTATGAACTTTGATTTA-AAGGAA
64 ATGGAGACTAGTTACAAGAATC-ATGCTTGCCTTATTTAAGCTATGAACTTTGATTTACAA--AA
88736 AATAGGGCAAATGAAGGATTTTCATGCAAAAGA
126 AATAGGGCAAA-GAAGGATTTTCATGC-AAAGA
* *
88769 AAATTC-TCAATATAATTTATCCTAATGAGGAGAATGTGTTTAT
1 AAA-GCATCAATATAATGTATCCTAATGAGG-GAATGTGTTTAT
88812 AGTGCTAATC
Statistics
Matches: 379, Mismatches: 81, Indels: 117
0.66 0.14 0.20
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 55 0.15
158 91 0.24
159 84 0.22
160 125 0.33
161 13 0.03
162 2 0.01
163 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (156 bp):
AAAGCATCAATATAATGTATCCTAATGAGGGAATGTGTTTATGGCTTCACAGTCTTGAAAAGAAT
GGAGACTAGTTACAAGAATCATGCTTGCCTTATTTAAGCTATGAACTTTGATTTACAAAAAATAG
GGCAAAGAAGGATTTTCATGCAAAGA
Found at i:88619 original size:159 final size:157
Alignment explanation
Indices: 87815--91519 Score: 885
Period size: 158 Copynumber: 23.3 Consensus size: 157
87805 AAAAAAAGAT
* ** * **
87815 CATCAATATCATTTATCCTAATGA-AGAGAATGTGTTTACAGTG-CTAATCAC-GAAATCAATGA
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAATC-CTTAAAAGAATGA
* * * * * * * * *
87877 AGATCATTACT-AGAATGCATGTTTGTCTCATTTGAGCCATGAA-TTTAGACTTTACAAAAATTG
64 GGATTAGTA-TGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTT-GA-TTTACAAAAATCG
* ** * * *
87940 GTGGGAA-AAATGCCATTCTTGTGAAACCAAAG
125 GTGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * *
87972 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGGATGAGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTT-AAA--A-GA--
**
88037 ATGAGGATTAGTATGAGGATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAA
60 ATGAGGATTAGTATGAGGATTCATGTTTGTT-TATTTAAGACATGAACTTTGATT-TA-CAAAAA
*
88102 -CGGTGGAAAGAAATGCTTTTCTCGCGACGCCAAAG
122 TCGGTGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * *
88137 CATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTT-TGGCTTCAC-AGT-CTTGAAAAAGAA
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGC-CTAATCCTT--AAAAGAA
* * * * * * *
88198 TG-GAGACT-GT-TACAAGAATCAATGCTTGCCTTATTTAAG-CTATGAACTTTGATTTAAAGGA
61 TGAG-GATTAGTAT-GAGGATTC-ATGTTTG-TTTATTTAAGAC-ATGAACTTTGATTTACA--A
* * * * * * *
88259 AAATAGG-GCAAATG-AAGGATTTTCAT-GCAAAAG-AAAATT
119 AAATCGGTGGAAA-GAAATGCTTTTC-TCGC-GAAGCCAAA-G
* * * ** * ** *
88298 C-TCAATATAATTTATCCTAATGAGGAGAATGTGTTTACAGTG-CTAATCAC-GAAATCAATGAA
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAAGAATGAG
* * * * * * * *
88360 GATCATTACT-AGAATGCATGTTTGTCTCATTTGAGCCATGAA-TTTAGACTTTACAAAAATTGG
65 GATTAGTA-TGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTT-GA-TTTACAAAAATCGG
* ** *** *
88423 TGGGAA-AAATGCCATTCTTATGAAACCAAAG
126 TGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * *
88454 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGGATGAGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
**
88519 ATTAGTATGAGGATTCATGTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAA-CGGTG
66 ATTAGTATGAGGATTCATGTTTGTT-TATTTAAGACATGAACTTTGATT-TA-CAAAAATCGGTG
*
88583 GAAAGAAATGCTTTTCTCGCGACGCCAAAG
128 GAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * *
88613 CATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTT-TGGCTTCAC-AGT-CTTGAAAAAGAA
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGC-CTAATCCTT--AAAAGAA
* * * * * * *
88674 TG-GAGACT-GT-TACAAGAATCAATGCTTGCCTTATTTAAG-CTATGAACTTTGATTTAAAGGA
61 TGAG-GATTAGTAT-GAGGATTC-ATGTTTG-TTTATTTAAGAC-ATGAACTTTGATTTACA--A
* * * * * * *
88735 AAATAGG-GCAAATG-AAGGATTTTCAT-GCAAAAG-AAAATT
119 AAATCGGTGGAAA-GAAATGCTTTTC-TCGC-GAAGCCAAA-G
* * * * *
88774 C-TCAATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CTAATCAC-AAAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAA-GAATGA
* * * * * * * * * * *
88836 AGATCATTACT-AGAATCCATGTTTGTCTCATTTGAGGCTTGAACTTAGACTTTACAAAAATTGG
64 GGATTAGTA-TGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGA-TTTACAAAAATCGG
* ** * *
88900 TGGGAA-AAATGCCATTCTTGCGAAACCAAAG
126 TGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * * *
88931 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATGAGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
* * **
88996 ATTAGTATGAGTATTCATTTTTGTTGTATTTAAGACACAAACTTTGATTCTATCAAAAA-CGGTG
66 ATTAGTATGAGGATTCATGTTTGTT-TATTTAAGACATGAACTTTGATT-TA-CAAAAATCGGTG
* *
89060 GAAAGAAAAGCTTTTCTCGTGACA-CCAAAG
128 GAAAGAAATGCTTTTCTCGCGA-AGCCAAAG
* * * * * * * * *
89090 CATCAATGTCATGTTTTCTAATCA-AGGGAATGTGTTTTTGGCTTCCCAGT-CTTGAAAAGAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCTT-AAAAGAATG
* * * ** * * ** *
89153 -GAGACTACT-TCGAGAATGGATGCTTCTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAAT
63 AG-GATTAGTAT-GAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGATTTACA--AAAAT
* * * * * **
89216 TGG-GCAAAGAAAAGATTTCCAT-GTTAAAG--AAA-
123 CGGTGGAAAGAAATGCTTTTC-TCG-CGAAGCCAAAG
* * * * * *
89248 CTTATCAGTATCATTTATCCTTATTAGGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAAT
1 C--ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAA-GAAT
* * * ** ** * * * * * * * *
89311 GAAGATCATTACCAAAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAAATTG
62 GAGGATTAGTATGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGA-TTTACAAAAATCG
* * * * *
89376 GTGGGAA-AAATGCCTTTCTTGCAAAACCAAAG
125 GTGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * * * * *
89408 CATCAATATCCTGTATCCTAATGAGCATACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
* * * * * ** * *
89473 AATAGTATGAGTATTCATTTTTGTTGAATTTAACACACAAACTCTAATTCTATCAAAAAT-GGTG
66 ATTAGTATGAGGATTCATGTTTGTT-TATTTAAGACATGAACTTTGATT-TA-CAAAAATCGGTG
** **
89537 GAAAGAAATGCTTTTCTCATGACA-AAAAAG
128 GAAAGAAATGCTTTTCTCGCGA-AGCCAAAG
* * * * *
89567 CATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGCTTCCTAGT-CTTGAAAAGAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCTT-AAAAGAATG
* * * * * * ** *
89630 -GAGACTATTACGA-GAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAAT
63 AG-GATTAGTATGAGGATTC-ATGTTTG-TTTATTTAAGACATGAACTTTGATTTACA--AAAAT
* ** * * * * ***
89693 AGG-ACAAAGAAAGGATTTCCAT-GCAAAAAGAAA-
123 CGGTGGAAAGAAATGCTTTTC-TCGCGAAGCCAAAG
* * * * *
89726 TACTCAATATCAAT-AATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAAT
1 CA-TCAATATC-ATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAA-GAAT
* * * * * * * * * * *
89788 GAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATT
62 GAGGATTAGTA-TGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGA-TTTACAAAAATC
* * *
89852 GGTTGG-AA-AAATGCCTTTCTTGCGAAACCAAAG
124 GG-TGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* ** * * *
89885 CATCAATATCTTGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGGATGAGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
* * * ** * * *
89950 ATTTGTATGAGTATTCATGTTTGTTGAATTTAAGACACAAAGTTCGATTTTATCAAAAA-CGATG
66 ATTAGTATGAGGATTCATGTTTGTT-TATTTAAGACATGAACTTTGA-TTTA-CAAAAATCGGTG
* * * *
90014 AAAAGAAAAGCTTTTCTTGTGACA-CCAAAG
128 GAAAGAAATGCTTTTCTCGCGA-AGCCAAAG
* * * * * ** *
90044 CATCAATATCATGTTTCCTAATGA-AGGGAATGGGTTTTTGGCTTCCCCAT-CTTGAAAGGAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCTT-AAAAGAATG
** * * * * ** * *
90107 -GAGA-CCGTTTTGAGAATTGATGCTTGTCTTATTTAAGGTATAAACTTTGATTTAAAGGAAAAT
63 AG-GATTAG-TATGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGATTTACA--AAAAT
* * * * * ** * *
90170 AGG-GCAAAGAAAAGATTTCCATAC-AAAAG-AAAAT
123 CGGTGGAAAGAAATGCTTTTC-T-CGCGAAGCCAAAG
* * * * * *
90204 CATCAATATTATTTATCCTTATGAGGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATAA
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAA-GAATGA
** * * * * * * * * * *
90267 AAATCATTACT-AGAATCCGA-GTTTGTCTCAATTGAGGCATGAACTTAGACTTTACAAAAATTG
64 GGATTAGTA-TGAGGATTC-ATGTTTGT-TTATTTAAGACATGAACTTTGA-TTTACAAAAATCG
* * * * * *
90330 GTGTGGAA-AAA-GCCTTTCTGGCAAAACGAAAG
125 GTG-GAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * * *
90362 CATCAATATCATGTATACTAATAAGAAG-AT-TGTTTATGGTGCCTAATCCTAAAAAGAACGGGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
* * * * * **
90425 ATTAGTTTGAGTATACATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTG
66 ATTAGTATGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGATT-TA-CAAAAATCGGTG
* * *
90489 AAAAGAAATGCTTTTCTTGCTACA-CCAAAG
128 GAAAGAAATGCTTTTCTCGCGA-AGCCAAAG
* ** * * * * * * * *
90519 CATCAATGTTTTGTATCCTAACGA-AGGGAATGTGTTTTTGGCTTCC-CATTCTCGAAAAGAGTG
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCT-TAAAAGAATG
* * * * * ** *
90582 -GAGACT-GTTACGAGAATTGATGCTTGTCTTATTTAAGGTATGAACCTTGATTTTA-ATGAAAA
63 AG-GATTAG-TATGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGA-TTTACA--AAAA
* * * * * * *
90644 TAGG-GCAAAGAAAAG-ATTTCTATGCAAAAG--AAAT
122 TCGGTGGAAAGAAATGCTTTTCT-CGC-GAAGCCAAAG
* * * ** *
90678 CATCAATATCATTTATCCTTATGAGGAGAATGTGTTTACAGTCCCTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAA-GAATGA
* * * * * * * ** * * *
90741 AGATCATTACT-AGGATGCATGTTTGCCTCATTTGAGGTATGAACTTAGACTTTACGAAAATTGG
64 GGATTAGTA-TGAGGATTCATGTTTG-TTTATTTAAGACATGAACTTTGA-TTTACAAAAATCGG
* * *
90805 TGGGAA-AAATGC-TTTCTTGCGAAACCAAAG
126 TGGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * * *
90835 TATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAGAAT-AGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGA-G
* ** * * ** *
90898 GATTACTATGATTATTCATGTTTGTCGTATTTAGGACACAAACTTTGATTCTA-ACAAAATCGAT
65 GATTAGTATGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGATT-TACA-AAAATCGGT
*
90962 GGAAAGAAATGCTTTTCTCGC-AACACCAAAG
127 GGAAAGAAATGCTTTTCTCGCGAA-GCCAAAG
* * * * *
90993 CATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGCTTCCCAAT-CTTGAAAAGAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCTT-AAAAGAATG
* * * * ** * ** *
91056 -GAGACT-GT-TACAAGAATCGATACTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAA
63 AG-GATTAGTAT-GAGGATTC-ATGTTTG-TTTATTTAAGACATGAACTTTGATTTACA--AAAA
* * * ** * * ** *
91118 TAGG-GCAAAGAAAGGAATTCCAT-GCAAAAGAAAAAA
122 TCGGTGGAAAGAAATGCTTTTC-TCGC-GAAGCCAAAG
* * * *
91154 C-TCAATATCATTTATCCTAATGAGGAGAATGTGGTTATAGTGCCTAATCAC--AAAAGGAATGA
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTTAAAA-GAATGA
* * * * * * * * * * * * *
91216 AGATCATTATTAGAATCCATATTTGTCTCATTTGAAG-CATAAAATTAGACTTTACAAAAATTGA
64 GGATTAGTATGAGGATTCATGTTTGT-TTATTT-AAGACATGAACTTTGA-TTTACAAAAATCGG
* * * *
91280 TAGG-AA-AAATGCCTTTCTTGCGAAACCAAAC
126 T-GGAAAGAAATGCTTTTCTCGCGAAGCCAAAG
* * * * * * * * * *
91311 CACCAATATGATGTATCCTAAGGAGAAGACTATGTTTATGTTGCGTAGTCCTGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
* * * * ** * *
91376 ATTAGTATGAGTATTCTTGTTTGTCATATTTAAGAGACAAACTTTGATTCCACAAAAAACGG-GA
66 ATTAGTATGAGGATTCATGTTTGT-TTATTTAAGACATGAACTTTGATT-TACAAAAATCGGTG-
* * *
91440 GAAAGAAAAGCTTTTCTC-CCAACACCAAAG
128 GAAAGAAATGCTTTTCTCGCGAA-GCCAAAG
* * * *
91470 CATCAATGTCATGCATCCTAATGA-AGGGAATGTGTTT-TGGCTTCCTAATC
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATC
91520 TTGAAAATAA
Statistics
Matches: 2517, Mismatches: 755, Indels: 550
0.66 0.20 0.14
Matches are distributed among these distances:
155 13 0.01
156 115 0.05
157 256 0.10
158 668 0.27
159 632 0.25
160 645 0.26
161 59 0.02
162 6 0.00
163 5 0.00
164 51 0.02
165 66 0.03
166 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (157 bp):
CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTTAAAAGAATGAGG
ATTAGTATGAGGATTCATGTTTGTTTATTTAAGACATGAACTTTGATTTACAAAAATCGGTGGAA
AGAAATGCTTTTCTCGCGAAGCCAAAG
Found at i:92683 original size:477 final size:475
Alignment explanation
Indices: 91792--93263 Score: 2109
Period size: 476 Copynumber: 3.1 Consensus size: 475
91782 AAAGCATCAA
*
91792 TATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTGATGTTTGTCGTATTTAAGAG
1 TATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
* **
91857 ACAAACTTTGATTTTATCAAAAACAGTGGAAAGAAAAGCTTTTC-T-CACATGAAAGCATCAATG
66 ACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAATG
*
91920 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATTA
131 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTA
* * * *
91985 TGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTGGATTTAAAGGAAATTATGGCAAAGAAA
196 CGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAAA
*
92050 AAATTCTCATGCAAAAGAAGATCATCAATATCATTCTTCCTAATGAGGAGAATGTGTTTACAGTG
260 AGATTCTCATGCAAAAGAAGATCATCAATATCATT-TTCCTAATGAGGAGAATGTGTTTACAGTG
* * * *
92115 CCTAATTACAGAATGA-ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAGC
324 CCTAATCACAAAATGATATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAAC
* * *
92179 TTAGAGTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACTAAAGAATCAATATCATGT
389 TTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGT
* *
92244 ATCCTAATTACAAGACTATGTT
454 ATCCTAATGAGAAGACTATGTT
* * * * *
92266 TATGGTGCTTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCATATTTAAGAC
1 TATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
* * *
92331 ACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCAACACCAAAGTATCAAT
66 ACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGC-ACACCAAAGCATCAAT
* * *
92396 GTCATGTATCGTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
130 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
* * *
92461 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTAATTTAAGGGAAAATAGGGCAAAGAA
195 ACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAA-GGAAAATAGGGCAAAGAA
* * * * * *
92526 AGGATT-TGCATGCAAAAAAAAATCAGCAATATCATTTGTCCTAATGAGGAGAATGTATTTATAG
259 AAGATTCT-CATGCAAAAGAAGATCATCAATATCATTT-TCCTAATGAGGAGAATGTGTTTACAG
* * **
92590 TACCTAGTCACAAAAT-ATATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCATAA
322 TGCCTAATCACAAAATGATATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGA
* * * *
92654 ACTTAGACTATACAAAAATTGGTGGG-AAAATGCTTTTCTTGCGAACCCAAAGCATCAATATGAT
387 ACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCAT
92718 GTATCCTAATGAGAAGACTATGTT
452 GTATCCTAATGAGAAGACTATGTT
* * ** *
92742 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGCTTATACATGTTTGTCGTATTTAAGAG
1 TATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
* * * *
92807 ATAAACTTTGATTCTATCAAAAATAGTGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAAT
66 ACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTG-CACACCAAAGCATCAAT
* * * *
92872 GTCATTTATCCTAATGAAAGGAATGTGTTTTGGGCTTCCTAGTCTTGATAAGAATGGAGACTGTT
130 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
* * *
92937 ACGAGAATCGATGCTTGTTTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGCCAATGAA
195 ACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAA
* * *
93002 AAGATTCTCATGCAAAAGAAGATCATTAATATCATTTATCCTTATAAGGAGAATGTGTTTACAGT
259 AAGATTCTCATGCAAAAGAAGATCATCAATATCATTT-TCCTAATGAGGAGAATGTGTTTACAGT
93067 GCCTAATCACAAAATGAT-TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAA
323 GCCTAATCACAAAATGATATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAA
* * * * * * * *
93131 CTTTGGCTTTACGAAATTTGGTGGAAAAAATGACTTTCTTGCAAAACCAAAGCATCAATATCGTG
388 CTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATG
93196 TATCCTAATGAGAAGACTATGTT
453 TATCCTAATGAGAAGACTATGTT
* *
93219 TATGGTGCCTAATTCTGAAAAGGATGAGGATTAG---GAGTATTCATG
1 TATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATG
93264 ACTATTGAGA
Statistics
Matches: 878, Mismatches: 108, Indels: 24
0.87 0.11 0.02
Matches are distributed among these distances:
474 108 0.12
475 1 0.00
476 418 0.48
477 351 0.40
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (475 bp):
TATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
ACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTA
CGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAGGAAAATAGGGCAAAGAAAA
GATTCTCATGCAAAAGAAGATCATCAATATCATTTTCCTAATGAGGAGAATGTGTTTACAGTGCC
TAATCACAAAATGATATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTT
AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
CCTAATGAGAAGACTATGTT
Found at i:98585 original size:9 final size:9
Alignment explanation
Indices: 98573--98627 Score: 53
Period size: 9 Copynumber: 6.4 Consensus size: 9
98563 CTCTCTCTAT
98573 TATCTCTCC
1 TATCTCTCC
98582 TATCTCTCC
1 TATCTCTCC
* *
98591 T-CCTAT-C
1 TATCTCTCC
*
98598 -ATCCCTCC
1 TATCTCTCC
*
98606 TATCTCTAC
1 TATCTCTCC
98615 TATCTCTCC
1 TATCTCTCC
98624 TATC
1 TATC
98628 CCCCCTCCTA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
7 3 0.09
8 4 0.11
9 28 0.80
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.42
Consensus pattern (9 bp):
TATCTCTCC
Found at i:98593 original size:12 final size:12
Alignment explanation
Indices: 98578--98612 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
98568 TCTATTATCT
98578 CTCCTATCTCTC
1 CTCCTATCTCTC
98590 CTCCTATCATC-C
1 CTCCTATC-TCTC
98602 CTCCTATCTCT
1 CTCCTATCTCT
98613 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:98593 original size:42 final size:42
Alignment explanation
Indices: 98541--98663 Score: 183
Period size: 42 Copynumber: 2.9 Consensus size: 42
98531 CATCTTCTTC
* *
98541 TCTCTTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTA
1 TCTC-TCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
98584 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
* * * *
98626 TCCCCCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
98664 TTGAGGGCTA
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 70 0.95
43 4 0.05
ACGTcount: A:0.11, C:0.46, G:0.00, T:0.42
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
Found at i:106863 original size:9 final size:9
Alignment explanation
Indices: 106849--106909 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
106839 CTCTCTTTAT
106849 TATCTCTCC
1 TATCTCTCC
106858 TATCTCTCC
1 TATCTCTCC
* *
106867 T-CCTAT-C
1 TATCTCTCC
*
106874 -ATCCCTCC
1 TATCTCTCC
*
106882 TATCTCTAC
1 TATCTCTCC
106891 TATCTCTCC
1 TATCTCTCC
*
106900 TATCTGTCC
1 TATCTCTCC
106909 T
1 T
106910 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.13, C:0.43, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:106869 original size:42 final size:42
Alignment explanation
Indices: 106817--106939 Score: 183
Period size: 42 Copynumber: 2.9 Consensus size: 42
106807 CATCTTCTTC
* * *
106817 TCTCTTCCTCCTATCATCCCTCCTCTCTTTATTATCTCTCCTA
1 TCTC-TCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
106860 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
* * *
106902 TCTGTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
106940 TTGAGGGCTA
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 70 0.95
43 4 0.05
ACGTcount: A:0.11, C:0.43, G:0.01, T:0.45
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTA
Found at i:106871 original size:12 final size:12
Alignment explanation
Indices: 106854--106930 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
106844 TTTATTATCT
106854 CTCCTATCTCTC
1 CTCCTATCTCTC
106866 CTCCTATCATC-C
1 CTCCTATC-TCTC
106878 CTCCTA--TCT-
1 CTCCTATCTCTC
*
106887 CTACTA--TCT-
1 CTCCTATCTCTC
*
106896 CTCCTATCTGTC
1 CTCCTATCTCTC
106908 CTCCTATCATC-C
1 CTCCTATC-TCTC
106920 CTCCTATCTCT
1 CTCCTATCTCT
106931 TCTTTCTCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
9 15 0.28
11 4 0.07
12 32 0.59
13 3 0.06
ACGTcount: A:0.13, C:0.45, G:0.01, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:114352 original size:682 final size:682
Alignment explanation
Indices: 113047--114409 Score: 2726
Period size: 682 Copynumber: 2.0 Consensus size: 682
113037 AGCATAGTCC
113047 TTGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGTGTTGGAAGGATTTCAAGGA
1 TTGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGTGTTGGAAGGATTTCAAGGA
113112 CCAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATT
66 CCAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATT
113177 TGAAAGTAGACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATA
131 TGAAAGTAGACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATA
113242 TGGGCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACT
196 TGGGCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACT
113307 TGCTTTGGGCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAG
261 TGCTTTGGGCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAG
113372 CATAATAAGCCCCTTAGGGTTTGTGTTAACTATGGCTTATGAGGGCATATATAAGCTCTTGTAAA
326 CATAATAAGCCCCTTAGGGTTTGTGTTAACTATGGCTTATGAGGGCATATATAAGCTCTTGTAAA
113437 CAGATTTGGAGGGGGCAGACATTCATATTTGCAGAAAACACATTTTGTGTGAGAGTGTGATTCTT
391 CAGATTTGGAGGGGGCAGACATTCATATTTGCAGAAAACACATTTTGTGTGAGAGTGTGATTCTT
113502 AGGTTCTTAAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATT
456 AGGTTCTTAAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATT
113567 CCTTTTGGCTTATCAATCTTGGGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTT
521 CCTTTTGGCTTATCAATCTTGGGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTT
113632 ATTTTTTTCTGCTTCTTTCAATTTCTGTCCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCA
586 ATTTTTTTCTGCTTCTTTCAATTTCTGTCCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCA
113697 TCTCAAGATCATTATTTAGGCAACCTTGGTTG
651 TCTCAAGATCATTATTTAGGCAACCTTGGTTG
113729 TTGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGTGTTGGAAGGATTTCAAGGA
1 TTGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGTGTTGGAAGGATTTCAAGGA
113794 CCAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATT
66 CCAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATT
113859 TGAAAGTAGACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATA
131 TGAAAGTAGACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATA
113924 TGGGCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACT
196 TGGGCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACT
113989 TGCTTTGGGCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAG
261 TGCTTTGGGCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAG
114054 CATAATAAGCCCCTTAGGGTTTGTGTTAACTATGGCTTATGAGGGCATATATAAGCTCTTGTAAA
326 CATAATAAGCCCCTTAGGGTTTGTGTTAACTATGGCTTATGAGGGCATATATAAGCTCTTGTAAA
114119 CAGATTTGGAGGGGGCAGACATTCATATTTGCAGAAAACACATTTTGTGTGAGAGTGTGATTCTT
391 CAGATTTGGAGGGGGCAGACATTCATATTTGCAGAAAACACATTTTGTGTGAGAGTGTGATTCTT
114184 AGGTTCTTAAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATT
456 AGGTTCTTAAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATT
114249 CCTTTTGGCTTATCAATCTTGGGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTT
521 CCTTTTGGCTTATCAATCTTGGGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTT
114314 ATTTTTTTCTGCTTCTTTCAATTTCTGTCCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCA
586 ATTTTTTTCTGCTTCTTTCAATTTCTGTCCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCA
114379 TCTCAAGATCATTATTTAGGCAACCTTGGTT
651 TCTCAAGATCATTATTTAGGCAACCTTGGTT
114410 CATGGTTGTC
Statistics
Matches: 681, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
682 681 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (682 bp):
TTGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGTGTTGGAAGGATTTCAAGGA
CCAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATT
TGAAAGTAGACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATA
TGGGCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACT
TGCTTTGGGCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAG
CATAATAAGCCCCTTAGGGTTTGTGTTAACTATGGCTTATGAGGGCATATATAAGCTCTTGTAAA
CAGATTTGGAGGGGGCAGACATTCATATTTGCAGAAAACACATTTTGTGTGAGAGTGTGATTCTT
AGGTTCTTAAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATT
CCTTTTGGCTTATCAATCTTGGGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTT
ATTTTTTTCTGCTTCTTTCAATTTCTGTCCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCA
TCTCAAGATCATTATTTAGGCAACCTTGGTTG
Found at i:115377 original size:12 final size:11
Alignment explanation
Indices: 115355--115426 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
115345 AGAGAAAGAA
*
115355 GAGAGAGGAGG
1 GAGATAGGAGG
115366 GATGATAGGAGG
1 GA-GATAGGAGG
*
115378 AGAGACAGGA--
1 -GAGATAGGAGG
*
115388 GAGATAGTA--
1 GAGATAGGAGG
115397 GAGATAGGAGG
1 GAGATAGGAGG
115408 GATGATAGGAGG
1 GA-GATAGGAGG
115420 AGAGATA
1 -GAGATA
115427 ATAGAGAGAG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
9 15 0.30
11 4 0.08
12 27 0.54
13 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.47, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:115406 original size:42 final size:42
Alignment explanation
Indices: 115345--115424 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
115335 TAGCCCTCAA
115345 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
115387 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGA
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGA
115425 TAATAGAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.44, C:0.01, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:115421 original size:33 final size:33
Alignment explanation
Indices: 115384--115454 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
115374 GAGGAGAGAC
* * *
115384 AGGAGAGATAGTAGAGATAGGAGGGATGATAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
115417 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
115450 AGGAG
1 AGGAG
115455 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.01, G:0.46, T:0.11
Consensus pattern (33 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
Found at i:115433 original size:42 final size:42
Alignment explanation
Indices: 115345--115433 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
115335 TAGCCCTCAA
*
115345 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * * * *
115387 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAT
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
115429 AGAGA
1 AGAGA
115434 GAGGAGGGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.10
Consensus pattern (42 bp):
AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:121905 original size:15 final size:17
Alignment explanation
Indices: 121887--121923 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
121877 TTTGTTCGAC
121887 AATTTTC-TTTTCAA-A
1 AATTTTCATTTTCAACA
121902 AA-TTTCATTTTCAACA
1 AATTTTCATTTTCAACA
121918 AATTTT
1 AATTTT
121924 GATTCATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.21
15 9 0.47
16 3 0.16
17 3 0.16
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (17 bp):
AATTTTCATTTTCAACA
Found at i:126230 original size:159 final size:156
Alignment explanation
Indices: 125118--126722 Score: 389
Period size: 159 Copynumber: 10.1 Consensus size: 156
125108 AAAAGAAGAT
* *
125118 CATCAATATCATTTATCTTAATGAGGAGAATGTG-TTACAGTGCCTAATGACAAAAAGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
* * * * *
125182 ATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAAATTGGACTTTACAAAAATTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATTT-AAGCATGAACTTGGA-ATTACAAAAATTGGTGA
* **
125247 GAAAAATGCCTTTCTTGTGAAACCAAAG-
129 GAAAAA-GCCATTCTTACGAAACCAAAGC
** * * * * ** * *** * * *
125275 CAT-AA-AT-A-TCGT-GTAATGAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAGGACGAGG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
* * * * * * * * *
125335 ATTAGTA-TGAGTATTCATGTTTATCAT-ATTTAAGAGATAAACTTTGATTCTATCAAAAA-TGG
66 ATCATTACT-AGAATCCATGTTTGTC-TCATTTAAG-CATGAACTTGGAAT-TA-CAAAAATTGG
* ** * * *
125397 TGGGAAAAAAAGCTTTTCTTATGACACCAAA-A
126 T--GAGAAAAAGCCATTCTTACGAAACCAAAGC
* *** * * ***
125429 CATCAATGTCATGTT-TCCTAATGAAGGA-AATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATT
1 CATCAATATCAT-TTATCCTAATG-AGGAGAATGTGTTTACAG-TGCCTAATCACAAAAAGAA-T
* * ** * * * * * *
125492 GAA-A-CTATTTCAAGAATTGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAAT
62 GAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAA-GCATGAACTTGGAATTACA--AAAAT
* ** ** * *
125555 AGG-GCCAAAAA-AAATTCTTATGCAAA--AGAAGTT
123 TGGTGAGAAAAAGCCATTCTTACG-AAACCA-AAG-C
* *
125588 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
* * * * * * *
125653 ATCATTACTGGAATCCATGTTTGTTTCATTCGAGGCACGAACTTGGACTTTATAAAAATTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATT-TAAGCATGAACTTGGA-ATTACAAAAATTGGTGA
* *
125718 GAAAAATGCCTTTCTTGCGAAACCAAAG-
129 GAAAAA-GCCATTCTTACGAAACCAAAGC
** * * * * * *** *
125746 CATCAATATCAACTATCCTAATGAGAAGACTATGTTTATGAG-GCATAATCTTGAAAAGGAT-AA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-CAGTGCCTAATCACAAAAAGAATGAA
* * * * * * * ** * *
125809 GGATTAGTA-TAAGTATTCATGTTCGTCGT-TTTTAAGAAACAAACTTTGATTTAATCAAAAA-T
65 -GATCATTACT-AGAATCCATGTTTGTC-TCATTTAAG-CATGAACTTGGAATT-A-CAAAAATT
* ** ** *
125871 GGTGGAAAGAAAAGCTTTTCTTGTGATACCAAAG-
124 GGT-GAGA-AAAAGCCATTCTTACGAAACCAAAGC
* * * *** * * * ***
125905 CATCAATGTCAGGTT-TCCTAATAAAGG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATG
1 CATCAATATCA-TTTATCCTAAT-GAGGAGAATGTGTTTACAG-TGCCTAATCACAAAAAGAATG
* * * * * * * * * *
125968 GAGA-CTGTTTCGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTA-ATGGAAAAT
63 AAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAA-GCATGAACTTGGAATTACA---AAAAT
* * **
126031 AGG-GCAAAGAAAAA---ATTCTCATAC-AAA-AAAATAT
123 TGGTG---AGAAAAAGCCATTCT--TACGAAACCAAA-GC
*
126065 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
126130 ATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCATGAACTTGGACATTACAAAAATTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATTT-AAGCATGAACTTGGA-ATTACAAAAATTGGTGA
126195 GAAAAAGGCCATTCTTACGAAACCAAAGC
129 GAAAAA-GCCATTCTTACGAAACCAAAGC
* * * * * * * ** * *** * *
126224 CGTCAATATCGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCATAATCTTGAAAAGGATGAGG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
* * * * * * * *
126289 ATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAG-AGGCAAAATT-GATTCTATCAAAAACAA
66 ATCATTACT-AGAATCCATGTTTGTC-TCATTTAAGCATG--AACTTGGAAT-TA-C-AAAA-AT
** ** ** *
126350 TGGAAAG-AAAAGCTTTTCTTGTGACACCAAAG-
123 TGGTGAGAAAAAGCCATTCTTACGAAACCAAAGC
* * * *** * * * ***
126382 CATCAATGTCAGGTT-TCCTAATAAAGG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATG
1 CATCAATATCA-TTTATCCTAAT-GAGGAGAATGTGTTTACAG-TGCCTAATCACAAAAAGAAT-
* * * * * * * * *
126445 GAA-A-CTATTTCGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGCAAAAT
62 GAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAA-GCATGAACTTGGAATTACA--AAAAT
* * * *
126508 AGG-GCAAAGAAAAA---ATTTCCCATAC-AAA-AAAAGAT
123 TGGTG---AGAAAAAGCCA-TT--CTTACGAAACCAAAG-C
* *
126543 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATGACAAAAAGAACGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
* * * *
126608 ATCATTACTGGAATCCATGTTTGTCTCATTCGAGGCACGAACTTGGACATTACAAAAATTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATT-TAAGCATGAACTTGGA-ATTACAAAAATTGGTGA
**
126673 GAAAAAGGCCATTCTCGCGAAACCAAAGC
129 GAAAAA-GCCATTCTTACGAAACCAAAGC
**
126702 CATCAATATCACGTATCCTAA
1 CATCAATATCATTTATCCTAA
126723 AGAGAAGACT
Statistics
Matches: 1028, Mismatches: 296, Indels: 246
0.65 0.19 0.16
Matches are distributed among these distances:
152 17 0.02
153 57 0.06
154 28 0.03
155 11 0.01
156 11 0.01
157 45 0.04
158 200 0.19
159 354 0.34
160 239 0.23
161 64 0.06
162 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (156 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTAAGCATGAACTTGGAATTACAAAAATTGGTGAGA
AAAAGCCATTCTTACGAAACCAAAGC
Found at i:126345 original size:477 final size:477
Alignment explanation
Indices: 124670--129076 Score: 5651
Period size: 477 Copynumber: 9.3 Consensus size: 477
124660 CAAAGAAAAG
* * * * *
124670 ATGTGTTTATAGTGCTTAATCACAAAATA-AATGAAGATCATTACTAAAATCCATGTTTGCCTCA
1 ATGTGTTTACAGTGCCTAATGACAAAA-AGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * * * * *
124734 TTTGAGGCACGGACTTAGACTTTACGAAATTTGGTGGGAAAAATTCCTTTCTTGTGAAATCAAAA
65 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG
* * * *
124799 AATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTTAAAAAGATGAGG
130 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGG
* *
124864 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGATAAACTTTGATTTTATCAAAAACGGTGG
195 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* *
124929 AAAGAATAGCTTTTCTTGTGACACCAAAGCATCAATGTCACGTTTCCTAATGAAGGGAATGTGTT
260 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTT
* * * * *
124994 TGTGGCTTCCTAGTTTTGAAAAGAATGGAGACTATTTCGAGAATCGATGCTCGTCTTATTTAAGG
325 TTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGG
* * *
125059 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAGTTCCCATGCAAAAGAAGATCATCAA
390 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAAAAAGATCATCAA
*
125124 TATCATTTATCTTAATGAGGAGA
455 TATCATTTATCCTAATGAGGAGA
*
125147 ATGTG-TTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACCAGAATCCATGTTTGTCTCAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
125211 TTGAGGCACGAAATTGGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGTGAAACCAAAGC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* * *
125276 ATAAATATCGTG-----TAATGAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAGGACGAGGA
131 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGGA
* * * *
125336 TTAGTATGAGTATTCATGTTTATCATATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGG
196 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GG
* * *
125401 AAA-AAAAGCTTTTCTTATGACACCAAAACATCAATGTCATGTTTCCTAATGAAGGAAATGTGTT
260 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTT
* * * *
125465 TTTGGCTTCCTAGTCTTGAAAAGAATTGAAACTATTTCAAGAATTGATGCTTGTCTTATTTAAGG
325 TTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGG
* * * *
125530 TATGAACTTTGATTTAAAGGAAAATAGGGCCAA-AAAAAATTCTTATGCAAAAGAAGTTCATCAA
390 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAAAAAGATCATCAA
*
125594 TATCATTTATCATAATGAGGAGA
455 TATCATTTATCCTAATGAGGAGA
* *
125617 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTGGAATCCATGTTTGTTTCAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
125682 TCGAGGCACGAACTTGGACTTTATAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAAGC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
*** * *
125747 ATCAATATCAACTATCCTAATGAGAAGACTATGTTTATGAG-GCATAATCTTGAAAAGGATAAGG
131 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATG-GTGCCTAATCTTGAAAAGGATGAGG
* * * * *
125811 ATTAGTATAAGTATTCATGTTCGTCGTTTTTAAGAAACAAACTTTGATT-TAATCAAAAATGGTG
195 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACGGTG
* * *
125875 GAAAGAAAAGCTTTTCTTGTGATACCAAAGCATCAATGTCAGGTTTCCTAATAAAGGGAATGTGT
259 GAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGT
* *
125940 TTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCTTATTTAAG
324 TTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAG
* * *
126005 GTATGAACTTTGATTTAATGGAAAATAGGGCAAAGAAAAAATTCTCATACAAAAAAATATCATCA
389 GTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAAAAAGATCATCA
126070 ATATCATTTATCCTAATGAGGAGA
454 ATATCATTTATCCTAATGAGGAGA
126094 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * * * *
126159 TTGAAGCATGAACTTGGACATTACAAAAATTGGTGAGAAAAAGGCCATTCTTACGAAACCAAAGC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG-
* * *
126224 CGTCAATATCGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCATAATCTTGAAAAGGATGAGG
130 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGG
* * **
126289 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGGCAAA-ATTGATTCTATCAAAAACAATGG
195 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* *
126353 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAGGTTTCCTAATAAAGGGAATGTGTT
260 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTT
* *
126418 TTTGGCTTCCCAGTCTTGAAAAGAATGGAAACTATTTCGAGAATCGATGCTTGTCTTATTTAAGG
325 TTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGG
* * *
126483 TATGAACTTTGATTTAAAGCAAAATAGGGCAAAGAAAAAATTTCCCATACAAAAAAAGATCATCA
390 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAA-TTCTCATGCAAAAAAAGATCATCA
126548 ATATCATTTATCCTAATGAGGAGA
454 ATATCATTTATCCTAATGAGGAGA
* *
126572 ATGTGTTTACAGTGCCTAATGACAAAAAGAACGAAGATCATTACTGGAATCCATGTTTGTCTCAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * * *
126637 TCGAGGCACGAACTTGGACATTACAAAAATTGGTGAGAAAAAGGCCATTCTCGCGAAACCAAAGC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG-
** * *
126702 CATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAGGATGAGG
130 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGG
* * **
126767 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGGCAAA-ATTGATTCTATCAAAAACAATGG
195 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
126831 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTT
260 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTT
* *
126896 TTTGGCTTCCCAGTCTTGAAAAGAGTGGAGACTATTTCGAGAATCGATGCTTGTCTTATTTAAGG
325 TTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGG
* *
126961 TATGAAATTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCCCATGCAAAAAAAGATCATCAA
390 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAAAAAGATCATCAA
* *
127026 TATCATTTATCATAATAAGGAGA
455 TATCATTTATCCTAATGAGGAGA
* * **
127049 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCTATGCTTGTCTTGT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
127114 TTGAGGCACGTATTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCAAAACCAAAGC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* * * * *
127179 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTCTGGTGCCTAATCTTGAAAAGAACGGGGA
131 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGGA
* * * * *
127244 TTAGTGTCAGTATTCATGTTTGTCATATTTAA-AGGACAAACTTTGATTCTATAAAAAATGAG-G
196 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGA-GACAAACTTTGATTCTATCAAAAACG-GTG
* * * **
127307 GAAAGAAAAACTTTT-TCGGCGACACCAAAGCATCAATGTCAT-TTATCCTCGTGAAGGGAATGT
259 GAAAGAAAAGCTTTTCT-TGTGACACCAAAGCATCAATGTCATGTT-TCCTAATGAAGGGAATGT
* * ** *
127370 GTTTTTGG-TTCCCAGTCTTGAAAAGAATGGAGACAATTACAAGGGTCAATGCTTGTC-------
322 GTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTA
* *
127427 ----AT--A--TT-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC---AAAAGA--A-
387 AGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAAAAAGATCAT
*
127477 -AAT-T-A--T-T-CTAATCAGGAGA
452 CAATATCATTTATCCTAATGAGGAGA
* * * * * * *
127496 ATGTGTTTATAGTGCCTAATTACAAAATGAATGAGGATTATTAGTAGAATCCAAGTTTGTCTCAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * *
127561 TTGAGGGATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACTAAAGC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* **
127626 ATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAACAGG
131 ATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGA-G
* * ** * * *
127689 GATTAGTCTGAGTATACATGTTTGTCACATTTGAGAGACAAATTTTGATTCTATCAAAAAAGGTG
194 GATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * * * *
127754 AAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATCATTGTCAT-TTATCCTAATGAAGGGAAAGTG
259 GAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTT-TCCTAATGAAGGGAATGTG
* * *
127818 TTTTTGGCTTCTCAGTCTTGAAAAGAATGGAGACTGTTAT-AAGAATTGATGCTTGTCTTATTTA
323 TTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATT-TCAAGAATCGATGCTTGTCTTATTTA
** * * * *
127882 AGGTATGAACTTCAATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAA-ATAA
387 AGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAA-AAAGATCA
*
127946 TCAATATCATTTATCCTAATGAGAAGA
451 TCAATATCATTTATCCTAATGAGGAGA
* * * *
127973 ACGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * *
128038 TTGAGGCATGAACTTAGACTGTAC-GAAATTCGATGGGAAAAATGCCTTTCTTCCTAAACCAAAG
66 TTGAGGCACGAACTTAGACTTTACAAAAATT-GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG
* * * ** **
128102 CATCAATATTGTGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCCAGAAAAGGACAAGG
130 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGG
** * * *
128167 ATTAGTATGAGTATTCATGTTTGTCACAATTAAGAGTCAAACTTTGATTCTATCAAAAATGGTGG
195 ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * * **
128232 AAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAACATGTT
260 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTT
* * * * * * * * *
128297 TTTGGCTTCCCAGCCTCGAAAAGAAAGGAGATTATTACAAGAATCGACGCTTGCCTTTTTTATGG
325 TTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGG
* * *
128362 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATT-TGCATGCAAAAAAAAATCATCG
390 TATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCT-CATGCAAAAAAAGATCATCA
*
128426 ATATCATTTATCC-AGAT-A-AAGA
454 ATATCATTTATCCTA-ATGAGGAGA
* ** * * * * * *
128448 ATGTGTTTATAGACCCTAATCACAAAATGAATGAAGATCATTACTCGAATCGAAGTTTGTCTTAT
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * *
128513 TTGAGGTATGAACTTAGACTATACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAAC
66 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* *
128578 CTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGGA
131 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGGA
** * *
128643 TTAGCGTGAGTATTCATGTTTGTCGTATTTAGGAGACAAACTTTGATTCTATCAAAAACAGTGGA
196 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * ** * *
128708 AAAAAAAGCTTTTCTTGCGACACCAAAACATCAATGTCATGTACCCTATTGAAAGGAATGTGTTT
261 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTT
* * * * * *
128773 TTGGCTTCCCAGTCTTGAAAAGAATGCAAACTGTTACAAGAATCGATGCTTCTCTTATTTATGGT
326 TTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGGT
* * * *
128838 ATGAAATTTAATTTAAAGGAAAATAGAG-AAAGAAAAGATT-TCCATGCAAAAGAAA-ATCATCA
391 ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCT-CATGCAAAA-AAAGATCATCA
*
128900 ATATCGTTTATCCTAATGAGGAGA
454 ATATCATTTATCCTAATGAGGAGA
* * * *
128924 ATGTGTTTATAGTGCCTAATCACAAAATGAATG-AGAATCATTACTAGAATCCAAGTTTGTCTCA
1 ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAG-ATCATTACTAGAATCCATGTTTGTCTCA
* * * * * * *
128988 TTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTAGTGAAAGCAAAG
65 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG
* * *
129053 CATCAATGTCATGTTTCCTAATGA
130 CATCAATATCGTGTATCCTAATGA
129077 AGGGAATGTG
Statistics
Matches: 3482, Mismatches: 376, Indels: 145
0.87 0.09 0.04
Matches are distributed among these distances:
446 2 0.00
447 287 0.08
448 43 0.01
449 1 0.00
451 1 0.00
452 1 0.00
453 3 0.00
455 1 0.00
457 6 0.00
459 2 0.00
460 35 0.01
461 3 0.00
463 2 0.00
464 35 0.01
465 2 0.00
467 2 0.00
468 3 0.00
469 1 0.00
470 54 0.02
471 376 0.11
472 6 0.00
473 1 0.00
474 42 0.01
475 376 0.11
476 647 0.19
477 993 0.29
478 557 0.16
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
ATGTGTTTACAGTGCCTAATGACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGAGGA
TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTT
TTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAAGGT
ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCTCATGCAAAAAAAGATCATCAAT
ATCATTTATCCTAATGAGGAGA
Found at i:129136 original size:317 final size:317
Alignment explanation
Indices: 128709--129393 Score: 962
Period size: 317 Copynumber: 2.2 Consensus size: 317
128699 AACAGTGGAA
* * * *
128709 AAAAAAGCTTTTCTTGCGACACCAAAACATCAATGTCATGTACCCTATTGAAAGGAATGTGTTTT
1 AAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTT
* *
128774 TGGCTTCCCAGTCTTGAAAAGAATGCAAACTGTTACAAGAATCGATGCTTCTCTTATTTATGGTA
66 TGGCTTCCCAGTCTTGAAAAGAATGCAAACTATTACAAGAATCGATGCTTCTCTTATTTAAGGTA
* * *
128839 TGAAA-TTTAATTTAAAGGAAAATAGAG-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
131 T-AAACTTTAATTTAAAAGAAAATAGAGCAAAGAAAAAATTCCCATGCAAAAGAAAATCATCAAT
* * * *
128902 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG-AGAATCATT
195 ATCATTTATACTAATGAGGAAAATGTATTTATAGTGCCTAATCAC-AAATGAATGAAG-ATCATT
* * * *
128966 ACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGG
258 ACTAGAATCCAAGCTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * * * *
129026 AAAAAAGCTTTTCTAGTGAAAGCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTTT
1 AAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTT
* * * * * *
129091 TGGCTTCCCAGTCTTGAAAAGAGTGGAGACTATTTCGAGAATCGATGCTTGTCTTATTTAAGGTA
66 TGGCTTCCCAGTCTTGAAAAGAATGCAAACTATTACAAGAATCGATGCTTCTCTTATTTAAGGTA
* * * *
129156 TAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAAATTCCCATGCCAAAGAAGATCATCAATA
131 TAAACTTTAATTTAAAAGAAAATAGAGCAAAGAAAAAATTCCCATGCAAAAGAAAATCATCAATA
*
129221 TCATTTATACTAATGAGGAAAATGTATTTATAGTGTCTAATCACAAATGAATGAAGATCATTACT
196 TCATTTATACTAATGAGGAAAATGTATTTATAGTGCCTAATCACAAATGAATGAAGATCATTACT
* *
129286 AGAATCCATGCTTGTCTTATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGG
261 AGAATCCAAGCTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * * * *
129343 AAAAATGCCTTTCTTGCGAAACCAAAGTATCAATATGATGTATCCTAATGA
1 AAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGA
129394 GAAGACTATG
Statistics
Matches: 321, Mismatches: 44, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
316 3 0.01
317 244 0.76
318 74 0.23
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (317 bp):
AAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTT
TGGCTTCCCAGTCTTGAAAAGAATGCAAACTATTACAAGAATCGATGCTTCTCTTATTTAAGGTA
TAAACTTTAATTTAAAAGAAAATAGAGCAAAGAAAAAATTCCCATGCAAAAGAAAATCATCAATA
TCATTTATACTAATGAGGAAAATGTATTTATAGTGCCTAATCACAAATGAATGAAGATCATTACT
AGAATCCAAGCTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGG
Found at i:129358 original size:793 final size:775
Alignment explanation
Indices: 128220--129809 Score: 2055
Period size: 793 Copynumber: 2.0 Consensus size: 775
128210 TTGATTCTAT
* * *
128220 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATA
1 CAAAAATTGGTGGGAA-AAAAGCTTTTCTAGAGAAACCAAAGCATCAATGTCATGTATCCTAATA
*
128284 AAGGGAACATGTTTTTGGCTTCCCAGCCTCGAAAAGAAAGGAGATTATTACAAGAATCGACGCTT
65 AAGGGAACATGTTTTTGGCTTCCCAGCCTCGAAAAGAAAGGAGACTATTACAAGAATCGACGCTT
* * * * * **
128349 GCCTTTTTTATGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTGCATGCAAA
130 GCCTTATTTAAGGTATAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAAATTCCCATGCAAA
* *
128414 AAAAAATCATCGATATCATTTATCCAGATAAAGAATGTGTTTATAGACCCTAATCACAAAATGAA
195 AAAAAATCATCAATATCATTTATCCAGATAAAGAATGTATTTATAGACCCTAATCACAAAATGAA
* * * * * *
128479 TGAAGATCATTACTCGAATCGAAGTTTGTCTTATTTGAGGTATGAACTTAGACTATACAAAAATT
260 TGAAGATCATTACTAGAATCCAAGCTTGTCTTATTTGAAGCACGAACTTAGACTATACAAAAATT
*
128544 GGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACCTCAATATCATGTATCCTAATGAGAAGACTA
325 GGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTA
* * * * *
128609 TGTTTATGGTGCCTAATCTTGAAAAGGATGAGGATTAGCGTGAGTATTCATGTTTGTCGTATTTA
390 TGTTTATGGTGCCTAATCCTAAAAAAGATGAGGATTAGCATGAGTATTCATGTTTGTCATATTTA
* * **
128674 GGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAA-AAAAGCTTTTCTTGCGACACCAAAACA
455 AGAGACAAACTTTGATTCTATCAAAAACAGT-GAAAAGAAAAACTTTTCTTGAAACACCAAAACA
* * *
128738 TCAATGTCATGTACCCTATTGAAAG-GAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGCAA
519 TCAATGTCATGTACCCTAATG-AAGTGAA-----------CAT-CCAGCCTTGAAAAGAATGCAA
*
128802 ACTGTTACAAGAATCGATGCTT-CTCTTATTTATGGTATGAAATTTAATTTAAAGGAAAATAGAG
571 ACTGTTACAAGAATCGATGCTTGC-CTTATTTAAGGTATGAAATTTAATTTAAAGG-----AG-G
* * * * *
128866 -AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGT
629 CAAAGAAAAAATTTCCATGCAAAAGAAAATCATCAATATCATTTAACCGAATGAGGAGAATGCGT
* *
128930 TTATAGTGCCTAATCACAAAATGAATGAGA-ATCATTACTAGAATCCAAGTTTGTCTCATTTGAG
694 TTACAGTGCCTAATCACAAAATGAATGA-ATATCATTACTAAAATCCAAGTTTGTCTCATTTGAG
* **
128994 GCATGAAGTTAGACTTTA
758 GCACGAACATAGACTTTA
* * * *
129012 CAAAAATTGGTGGGAAAAAAGCTTTTCTAGTGAAAGCAAAGCATCAATGTCATGTTTCCTAATGA
1 CAAAAATTGGTGGGAAAAAAGCTTTTCTAGAGAAACCAAAGCATCAATGTCATGTATCCTAATAA
** * * ** * * *
129077 AGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAGTGGAGACTATTTCGAGAATCGATGCTTG
66 AGGGAACATGTTTTTGGCTTCCCAGCCTCGAAAAGAAAGGAGACTATTACAAGAATCGACGCTTG
* *
129142 TCTTATTTAAGGTATAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAAATTCCCATGCCAAA
131 CCTTATTTAAGGTATAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAAATTCCCATGCAAAA
* * * ***
129207 GAAGATCATCAATATCATTTATACTA-ATGAGGAA-AATGTATTTATAGTGTCTAATCAC-AAAT
196 AAAAATCATCAATATCATTTAT-CCAGAT-A--AAGAATGTATTTATAGACCCTAATCACAAAAT
* *
129269 GAATGAAGATCATTACTAGAATCCATGCTTGTCTTATTTGAAGCACGAACTTAGACTTTACAAAA
257 GAATGAAGATCATTACTAGAATCCAAGCTTGTCTTATTTGAAGCACGAACTTAGACTATACAAAA
* ** *
129334 ATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGTATCAATATGATGTATCCTAATGAGAAGA
322 ATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGA
* * *
129399 CTATGTTTATGGTGCCTAATCCTAAAAAAGATGGGGATTAGTATGAGTATTCGTGTTTGTCATAT
387 CTATGTTTATGGTGCCTAATCCTAAAAAAGATGAGGATTAGCATGAGTATTCATGTTTGTCATAT
* * *
129464 TTAAGAGACGAACTTTTATTCTATCAAAAACAGTGAAAAGAAAAACTTTTCTTGAAACACCAAAG
452 TTAAGAGACAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAACTTTTCTTGAAACACCAAAA
* * * * **
129529 CGTCAATGTCATGTATCCTAATGAAGTGAACATCCAGCCTTGAAAAGAATGGAGACTGTTATGAG
517 CATCAATGTCATGTACCCTAATGAAGTGAACATCCAGCCTTGAAAAGAATGCAAACTGTTACAAG
* * *
129594 AATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAGGCAAAGAAAAAATTTCCTT
582 AATCGATGCTTGCCTTATTTAAGGTATGAAATTTAATTTAAAGGAGGCAAAGAAAAAATTTCCAT
*
129659 GCAAAAGAAAATCATCAATATCATTTAACCGGATGAGGAGAATGCGTTTACAGTGCCTAATCACA
647 GCAAAAGAAAATCATCAATATCATTTAACCGAATGAGGAGAATGCGTTTACAGTGCCTAATCACA
* * *
129724 AAATGAATGAATATCATTACTAAAATCTATGTTTGTCTCATTTGAGGCACGAACATCGACTTTA
712 AAATGAATGAATATCATTACTAAAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGACTTTA
* *
129788 CGAAAATTGGTGAGAAAAAAGC
1 CAAAAATTGGTGGGAAAAAAGC
129810 ATAAATATCG
Statistics
Matches: 697, Mismatches: 91, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
775 2 0.00
776 151 0.22
781 66 0.09
782 3 0.00
792 189 0.27
793 264 0.38
794 20 0.03
795 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (775 bp):
CAAAAATTGGTGGGAAAAAAGCTTTTCTAGAGAAACCAAAGCATCAATGTCATGTATCCTAATAA
AGGGAACATGTTTTTGGCTTCCCAGCCTCGAAAAGAAAGGAGACTATTACAAGAATCGACGCTTG
CCTTATTTAAGGTATAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAAATTCCCATGCAAAA
AAAAATCATCAATATCATTTATCCAGATAAAGAATGTATTTATAGACCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCAAGCTTGTCTTATTTGAAGCACGAACTTAGACTATACAAAAATTG
GTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTAT
GTTTATGGTGCCTAATCCTAAAAAAGATGAGGATTAGCATGAGTATTCATGTTTGTCATATTTAA
GAGACAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAACTTTTCTTGAAACACCAAAACATC
AATGTCATGTACCCTAATGAAGTGAACATCCAGCCTTGAAAAGAATGCAAACTGTTACAAGAATC
GATGCTTGCCTTATTTAAGGTATGAAATTTAATTTAAAGGAGGCAAAGAAAAAATTTCCATGCAA
AAGAAAATCATCAATATCATTTAACCGAATGAGGAGAATGCGTTTACAGTGCCTAATCACAAAAT
GAATGAATATCATTACTAAAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGACTTTA
Found at i:133189 original size:475 final size:474
Alignment explanation
Indices: 129805--136479 Score: 7817
Period size: 475 Copynumber: 14.1 Consensus size: 474
129795 TGGTGAGAAA
* * * * * *
129805 AAAGCATAAATATCG-TGTATCTTAATGGGAAAACTATGTTTCTAGTGCCTAATCCTGAAAAGAA
1 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-AA
* * *
129869 TGGGGATTAGTATGAGTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTTTATCAAAAAC
64 -GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * *
129934 AGTGGAAAGAAAAGCTTTTCTCGTGATACCAAAGCATCAATGTCAT-TTATCCTAATGAAGGGAT
128 GGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTT-TCCTAATGAAGGGAA
* * *
129998 TGTGTTTTTGGCTTCCTAATATTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTAT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCTTGTCTTAT
* * * *
130063 TTAAGGTATAAACTTTGATTTTAAGGAAAATAGGGGCAAAGAAAAGATTTCCATGCAAATGAAAA
256 TTAAGGTATGAACTTTGATTTGAAGGAAAATA-GGGCAAAGAAAAGATTCCCATGCAAAAGAAAA
* * * *
130128 TCGTCAATATCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAA
320 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * *
130193 GATCATTTCTAGAATCCATGTTTGACTCGTTTGAGGCACGAACTTAGACTTCACAAAAATTGGTG
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
**
130258 GGAAAAATA--CTTTCTTGTAAAACC
450 GGAAAAA-AGCCTTTCTTGCGAAACC
* *
130282 AAAGCATCAATGTGATGTACCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAACAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-A-
* * * * * *
130347 GGCGATTAGTATAAGTATTCATGTTTGTCATATATAAGAGATAAACTTTGATTCTATCCAAAACG
64 GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* ** ** * * *
130412 GTGGAATGAAAAGCTTTTCACGCTACACCAAAGCATCAATGTCAAGTATCCTAACGAAGGGAATG
129 GTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATG
*** * ** * * * * *
130477 TGTTTACAGCTTCCTAACCTTGAAAAGAATGGAGACTATTATGATAATTGATGCTTATCTTATTT
194 TGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCTTGTCTTATTT
* * * * * *
130542 AAGGTATGAACTTTGATTTAAAGGAAAATAAGGCAATGAAAAGATTTCAATGTAAAAGAAAATCA
258 AAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCA
* * * *
130607 TCAATATCATTTATCCTTATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAAGGAAGAT
323 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGAT
* * *
130672 CATTACTAAAATCCAGGTTTCTCTCATTTGAGGCATGAACGAACTTAGACTTTACAAAAATTGGT
388 CATTACTAGAATCCATGTTTGTCTCATTTGAGGC----ACGAACTTAGACTTTACAAAAATTGGT
* * *
130737 GGGAAAAATGCCTTTCTTACAAAACC
449 GGGAAAAAAGCCTTTCTTGCGAAACC
*
130763 AAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
1 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-AA
* * *
130827 TGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAATTTTAATT-TCATAAAAAA
64 -GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCT-ATCAAAAA
* * ** * **
130891 CGGTGGAATGAAAAGCTTTTCTTGTGACATAAAAGCATCAATGTCAAGTTTCCTAAAAAAGGGAA
127 CGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAA
* * * * *
130956 TGTGTTTTTGGCTTCCGAGTTTTGAAAAGAATGGAGATTGTTACGAGAATTGATACTTGTCTTAT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCTTGTCTTAT
* * * *
131021 TTAAGGTATGAACTTTAATTTGAAAGAAAATAGGGCATAGAAAAGATTCTCATGCAAAAGAAAAT
256 TTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAAT
* **
131086 CATCAATATCAGTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTTTTCACAAAATGAAAT-AA
321 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATG-AATGAA
* * * * *
131150 GATCACTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACGAAAATTGGTT
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* *
131215 GGAAAAATGCTTTTCTTGCGAAACC
450 GGAAAAAAGCCTTTCTTGCGAAACC
* *
131240 AAAGCATCAATATCG-TGTATCCTAATGGGAAGACTATGTTTATGGTGCATAAT-CTGAAAAAAA
1 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAAA
* * *
131303 TGGGGATTAGTATGAGTATTCATGCTTGTCGTATTTAAGAGACAAATTTTGATTTTATCAAAAAC
64 -GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * ** * *
131368 AGTGGAATGAAAAGCTTTTCTTTCGACACCAAAGCATCAATGTCAAGTTTCCTAACGAAGGGAAT
128 GGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAAT
* * * *
131433 GTGTTTTTAGCTTCCAAGTTTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTATCTTATT
193 GTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTG-TTCGAGAATCGATGCTTGTCTTATT
* * * *
131498 TAAGGTGTGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTCCCATGCAAAAGAAGATC
257 TAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATC
* * *
131563 ATCAATATCATTTATCCTAACGAGGAGAACGTGTTTACAGTGCCTAATTACAAAATGAATGAAGA
322 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGA
* * * * * *
131628 TCATTACTAGAATCCATGTTTCTCTCATTTGAGGCATGATCTTAGGCTTTACAAGAATTAGTGGG
387 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
131693 AAAAAAGCCTTTCTTGC-AAACC
452 AAAAAAGCCTTTCTTGCGAAACC
* * * ** *
131715 ----C-T--AGATGATGTATCCTAATGCGAAGACAATGTTTATTATGCCTAATCCTGATAAGAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA-AA-AAA
* * * **
131773 GGGGATTAGTATGAGTATACATATTTGTTGTATTTAAGAGACAAACTTTGATTCTATCAAAAATA
64 GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* *
131838 GTGAAAAGAAAAGCTTTTCCTGTA-ACACCAAAGCATCAATGTCAT-TTATCCTAATGAAGGGAA
129 GTGGAAAGAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTT-TCCTAATGAAGGGAA
* * * * **
131901 GGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATAGAGACTATTACGAGAATTAATGCTTGTCTTAT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCTTGTCTTAT
* * * *
131966 TTAAGGTATGAACTTTAATTTGAAGGAAAATTGGGCATAGAAAAGATTCCCATGCGAAAGAAAAT
256 TTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAAT
*
132031 CATCAATATCAGTTATCCTAATGAGGAGAA--TG--T----T---T-ATCACAAAATGAAAT-AA
321 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATG-AATGAA
* * * * *
132083 GATCACTACTAGAATCCATGTTTATCTCAATTGAGGCATGAACTTAGACTTTACGAAAATTGGTG
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
*
132148 GG-AAAAA-----TGTTGCGAAACC
450 GGAAAAAAGCCTTTCTTGCGAAACC
* ** *
132167 AAAGCATCAATATCG-TGTATCCTAATGGGAAGACTATGTTTATGGTGTGTAATCCAGAAAAGGA
1 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA--A
* * * *
132231 TGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGTCAAACTTTGATTCTATAAAAAAT
63 AGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * *
132296 GGT-TAGAAGAAAAGCTTTTCTTGTGATACCAATGCATCAATGCCATGTTTCCTAATGAAGGGAA
128 GGTGGA-AAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAA
* *
132360 AGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCTTAT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTG-TTCGAGAATCGATGCTTGTCTTAT
* * * *
132425 TTATGG--TGAACTTTGATTTTAAGGAAAAGT-GGGCATAGAAAAGAATT-CCATGCAAATGAAA
256 TTAAGGTATGAACTTTGATTTGAAGGAAAA-TAGGGCAAAGAAAAG-ATTCCCATGCAAAAGAAA
** * * * *
132486 ATTGTCAATATCATTTATCCTAATAAGGAGAATATGTTTACAGTGCCTAATTACAAAATAAATGA
319 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
* * ** *
132551 AGGTCATTACTGGAATCTGTCTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
384 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
** * **
132616 GGGAAAAATTCCTTTCCTATGAAACC
449 GGGAAAAAAGCCTTTCTTGCGAAACC
** * *
132642 AAAGTGTCAATATGATGTATCCTAATGAGAAGACCATGTTTAGGGTGCCTAAT-CTGGAAAAGGA
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAA--A
* * * *
132706 TGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAAAGACAAATTTTGATTCTATCAAAAAT
63 AGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * *
132771 GGTGGAATGAAAAGCTTTTCTTGAGACAACAAAGCATCAATGTTATGTTTCCTAATGAAGGGAAT
128 GGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAAT
* * * * *
132836 GTGATTTTGGCTTCCCAGTCTTGAAAATAATGGAGACTGTATCGAGAACCGATGCCTGTTTTATT
193 GTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGT-TCGAGAATCGATGCTTGTCTTATT
* * ** *
132901 TAAGGTATGAACTTTGATTTGAAGGAAGATAGGGCAAAGAAAAAATTCCCATGTGAAAGAAGATC
257 TAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATC
* * * * *
132966 ATCCATATCATTTATCCTAATGCGGAGAATGTGTTTACAGTGCTTAATCATAAAACGAATGAAGA
322 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGA
* * * * *
133031 TAATTACTAGAATCCAAGTTTGTCTCATTT-AGGGCATGAAGTTAGACTTTATAAAAATTGGTGG
387 TCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
133095 GAAAAAAGCCTTTCTTGTGAAATC
451 GAAAAAAGCCTTTCTTGCGAAACC
* * * * * *
133119 AAAGCATCAATAAGATGTTTCCTAATGCGAGGACTATGTTTATGGTGCCTAATCTTGAAAAAAAG
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAGG
* ** * * * * *
133184 GGATTAGTAGGAGTATAAATGTTTTTTGTATTTAAAAAACAAACTTGGATTCTATC-AAAACGGT
66 GGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * *
133248 GAAAAGAAAAGCTTCTCTTGCGACGCCAAAGCATCAATGTCAT-TTATCCTAATGAAGGGAATGT
131 GGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTT-TCCTAATGAAGGGAATGT
* *
133312 GTTTTTGGCTTCCCAGACTTGAAAAGAATGGAGACAGTTTCGAGAATCGATGCTTGTCTTATTTA
195 GTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTG-TTCGAGAATCGATGCTTGTCTTATTTA
* *
133377 ATGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAATAAAATCAT
259 AGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCAT
* * *
133442 CAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAGTAAAGAGC
324 CAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
133507 ATTACTAGAATCCA--TTTGTCTCATTTGAGGCCCGAATTTGGACTTTACAAAATTTGGTGGG-A
389 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
*
133569 AAAAGCCTTTCTTGCGAAATC
454 AAAAGCCTTTCTTGCGAAACC
* *
133590 AAAGCATCAATGTGATGTATCCTAATGTGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAAA-
* * * *
133655 GGGGATTAGTATGAGCATACATGTTCT-TTGTATTTAAGGGACAAACTTTGATTCTATCAAAAAC
64 GGGGATTAGTATGAGTATTCATGTT-TGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * **
133719 GGTAGAAAGAAAAGCTTTTCTTGTGACACC-AAGCTTCAATG-CTATGTTTTTTAATGAAGGGAA
128 GGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTC-ATGTTTCCTAATGAAGGGAA
* *
133782 TGTGTTTTTGGCTTCCCATTCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTTTCTTAT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTG-TTCGAGAATCGATGCTTGTCTTAT
* * * *
133847 TTAAGGCATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAATA-AAAA
256 TTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAA-AGAAAA
* *
133911 TCATCAATATCATTTATCCTAAAGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
320 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * *
133976 TATCATTACTAGAATCTATGTTTTTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * ** *
134041 AGAAAAATGCCTTTCCAGCGAAATC
450 GGAAAAAAGCCTTTCTTGCGAAACC
* *
134066 AAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTATGGTGCCTTAT-CTAGAAAAAGA
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAA-A
* *
134130 TGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTTATTATATC-AAAAC
64 -GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * * *
134194 AGTGGAAA-AAAAGCTTTTC-TCAAACACCAAAGCATCAATGTCATGTATCCCAATGAAGGGACC
128 GGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGA-A
* * *
134257 T-TGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGGTTGTCTTAT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCTTGTCTTAT
* *
134321 TTAAGGCT-TGAGCTTTGATTTAAAGG-----A-GGCAAAGAAAAGATTCCCATGCAAAAGAAAA
256 TTAAGG-TATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAA
* * * * *
134379 TCAACAATATCATTTATCCTGATGAGAAGAATGTGTTTACAGTGCCCAATCACAAAATGAAGGAA
320 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * *
134444 TATCATTACTAGAATCTATGTTTGTCTCATTTTAGGCACGAACATAGACTTTACAAAAATTGGTG
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * *
134509 GCAAAAATGCCTTTCTTGTG-AACAC
450 GGAAAAAAGCCTTTCTTGCGAAAC-C
* * * * * *
134534 AAAGCATCAATATCATGTGTCCTAATGGGAAGACTATGTTTCTAGTGCCTAATCCTGAAAAGGAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA--AA
* * * * *
134599 GGGGATTAATATGAGTATTCAAGTTTGTCATATTTAAGAGACAAACTTTGATTATATCAAAAACA
64 GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * *
134664 ATGGAAAGAAAAGCTTTTC-TCATGACACCAAAGTAGCAATGTCATGTATCCTAATGAAGGGAAC
129 GTGGAAAGAAAAGCTTTTCTTGA-GACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAA-
*
134728 T-TGTTTTTGGCTTCCCAATCTTG--AA-AA--GA-A-TG---GAG-A-C--TG--T-T-TTATT
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTCGAGAATCGATGCTTGTCTTATT
* * * * *
134774 TAAGGTATGGACTTTGATTTTATAGGAAGATAGGGCAAAGAAAAAATTCCCATGCAAAA-AAAAA
257 TAAGGTATGAACTTTGATTTGA-AGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAAT
* * *
134838 CATCAATATCATTTATCCTACT-AGGGAGAATGTGTTTACAGTGCCTTATCATAAAATGAATGAA
321 CATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * *
134902 GCTCACTGCTAGAATCCATGTTTGTCTTATTTGAGACACGAACTTAGACTTTACAAAAAAATTGG
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC--AAAAATTGG
* *
134967 -GTGGAAAAAAGCCTTTCTTTCAAAACC
448 TG-GGAAAAAAGCCTTTCTTGCGAAACC
* * * * * ** *
134994 AAAGCAACAATATCATGTATCCTAATGGGAGGACTATGTTTCTTATGCCTAATCCTGAAATAGAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-A-AA
* * * *
135059 GGGGATTTGTATGAGTATTCAAGTATGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACA
64 GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * *
135124 ATGGAAAGAAAAGCTTTTCTCGCGACACAAAAGCAGCAATGTCATGTATCCTAATGAAGGGAACT
129 GTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAA-T
* * * *
135189 -TGCTTTTGGTTTCCCAGTCTTGAAAAGAATGGAGACTGTTACTAGAATAGATGCTTGTCTTATT
193 GTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCTTGTCTTATT
* * * *
135253 TAAGGTATGAACTTTGATTT-ATAGGAAGATAGGGCAAAGAAAA-AATCCCACGCAAAAGAAGAT
257 TAAGGTATGAACTTTGATTTGA-AGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAAT
* *
135316 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAG
321 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
135381 ATAATTACTAGAATCCATGTTTGTCTCATTTCAGCCATGAACTTAGACTTTACAAAAATTGGTGG
386 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
135446 G-AAAATGCCTTTCTTGCGAAACC
451 GAAAAAAGCCTTTCTTGCGAAACC
* *
135469 AACA-CTTCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAAAA
1 AA-AGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAAA
** * * *
135533 TGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTGGGAGACAAACTTTGATTCAATTAAAAAT
64 -GGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* *
135598 GGTGGAAAGAAAAGCTTTTCTTGCA-ACACCAAAGCATCAATGTCATGTGTCCTAATGAAGAGAA
128 GGTGGAAAGAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAA
* * * * * * *
135662 TGTG-TTTTAGCTTCCAAATCATGAAAAGAATGAAGACTGTTATGAGAATC-ATTGTTTGTCTTA
192 TGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT-CGAGAATCGA-TGCTTGTCTTA
* ** * * * *
135725 TTAAAGGTATGAACTCAGATTTAAAGGAAAATAGGGCAAAGAAAATATTTCCGTGCAAAAGAAAA
255 TTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAA
* * * * *
135790 TCATCAAAATCATTTATCCTAAT-AGGAGAATGTGCTTATAGTGCCAAATCACAAAATGAGTGAA
320 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * *
135854 GATCATTACGAGAATCCATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTAAAAAAATTGAT-
385 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* *
135918 GGAAAAAATGCCTTTCTTGGGAAAGC
450 GGAAAAAA-GCCTTTCTTGCGAAACC
* * ** *
135944 AAAGCATCAATATCG-TATATACTTCTGAGAAGACTATGTTTGTGGTGCCTAAT-CTGGAAAAGG
1 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAA--
* * *
136007 ATGGGGATTAGTATGGGTATTCATGTTTATCGTATTTAAGAGACAAACTTTGATTCTATCAAAAA
62 AAGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * *
136072 CAGTGG--AGAAAATGTTTTTCTTGTGACACCAAAGCATCAATGCCATGTTTTCTAATGAAGGGA
127 CGGTGGAAAGAAAA-GCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGA
* * *
136135 ATGTGTTTTTGGCTTCCCAGTCTTGAAAGGAATGGAGACTGTTTCAAGAATCGATGCTTATCTT-
191 ATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTG-TTCGAGAATCGATGCTTGTCTTA
* * *
136199 TTTAAGGTATGAACTTTGATTT-ATAGGAAGATAGGGCAAAGAAAAAATTCCCATGCAAAAGAAG
255 TTTAAGGTATGAACTTTGATTTGA-AGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAA
*
136263 ATCATCAATATCATTTATCCTAATGTGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
319 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
* *
136328 AGATCTTTACTAGAATACATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
384 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * *
136393 GAGAAAAATGCCTTTTTTGCGAAACC
449 GGGAAAAAAGCCTTTCTTGCGAAACC
* * * *
136419 AAAGCATCAATATCG-TGTATCCTAATAAGGAGACTATGTGTATGGTGCCGAATCCT-AAAAA
1 AAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA
136480 GAACGGGGAA
Statistics
Matches: 5339, Mismatches: 697, Indels: 329
0.84 0.11 0.05
Matches are distributed among these distances:
451 6 0.00
452 27 0.01
453 4 0.00
454 1 0.00
456 8 0.00
457 147 0.03
458 116 0.02
459 240 0.04
460 228 0.04
461 6 0.00
462 2 0.00
463 2 0.00
464 2 0.00
465 5 0.00
466 3 0.00
467 8 0.00
468 315 0.06
469 338 0.06
470 22 0.00
471 131 0.02
472 48 0.01
473 288 0.05
474 714 0.13
475 888 0.17
476 636 0.12
477 585 0.11
478 132 0.02
479 25 0.00
480 35 0.01
481 373 0.07
482 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
AAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAGG
GGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
GGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTG
TTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTCGAGAATCGATGCTTGTCTTATTTAAG
GTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCA
ATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCAT
TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
AAGCCTTTCTTGCGAAACC
Found at i:137287 original size:832 final size:829
Alignment explanation
Indices: 135671--137320 Score: 2248
Period size: 832 Copynumber: 2.0 Consensus size: 829
135661 ATGTGTTTTA
** *
135671 GCTTCCAAATCATGAAAAGAATGAAGACTGTTATGAGAATCATTGTTTGTCTTATTAAAGGTATG
1 GCTTCCAAATCATGAAAAGAATGAAGACTGTTACAAGAATCATTGCTTGTCTTATTAAAGGTATG
* * * *
135736 AACTCAGATTTAAAGGAAAATAGGGCAAAGAAAATATTTCCGTGCAAAAGAAAATCATCAAAATC
66 AACTCAGATTAAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAAAATC
* * *
135801 ATTTATCCTAATAGGAGAATGTGCTTATAGTGCCAAATCACAAAATGAGTGAAGATCATTACGAG
131 ATTTATCCTAAGAGGAGAATGTGCTTATAGTGCCAAATCACAAAATGAATGAAGATCACTACGAG
* ** * **
135866 AATCCATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTAAAAAAATTGATGGAAAAAATGCCT
196 AATCCATGGTTGTCTCATTTGAGGCACAAACATAGACTTCAAAAAAATTGATGGAAAAAACACCT
** * ** * *
135931 TTCTTGGGAAAGCAAAGCATCAATATCGTATATACTTCTGAGAAGACTATGTTTGTGGTGCCTAA
261 TTCTTGCAAAACCAAAGCATCAATATCGTATATACTAATGAGAAGACTATGTTTATAGTGCCTAA
* * * *
135996 TCTGGAAAAGGATGGGGATTAGTATGGGTATTCATGTTTATCGTATTTAAGAGACAAACTTTGAT
326 TCTGGAAAAGGATGGGCATTAGTATGAGTATTCAGGTTTATCATATTTAAGAGACAAACTTTGAT
** * * * * * *
136061 TCTATCAAAAACAGTGGAGAAAATGTTTTTCTTGTGACACCAAAGCATCAATGCCATGTTTTCTA
391 TCTATCAAAAACAGTGGAGAAAATGCATTTCTCGCGACACCAAAGCATCAAAGCCACGTATCCTA
** * * * *
136126 ATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAGGAATGGAGACTGTTTCAAGAATCGATG
456 ATGAAAAGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTCTTACAAGAATCGACG
* * *
136191 CTTATCTTTTTAAGGTATGAACTTTGATTTATAGGAAGATAGGGCAAAGAAAAAATTCCCATGCA
521 CTTAGCTTTTTAAGGTATGAACTTTGATATATAGGAAAATAGGGCAAAGAAAAAATTCCCATGCA
* *
136256 AAAGAAGATCATCAATATCATTTATCCTAATGTGGAGAATGTGTTTACAGTGCCTAATCACAAAA
586 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAA
* * *
136321 TGAATGAAGATCTTTACTAGAATACATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
651 AGAATAAAGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * * *
136386 AATTGGTGAGAAAAATGCCTTTTTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGGAG
716 AATTGGTGAGAAAAATGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCAAATAAGAAG
136451 ACTATGTGTATGGTGCCGAATCCTAAAAAGAACGGGGAAAGTATTTTGG
781 ACTATGTGTATGGTGCCGAATCCTAAAAAGAACGGGGAAAGTATTTTGG
* * * * *
136500 GCTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGTATCGA-TGCTTGTCTTATTTAAGGTAT
1 GCTTCCAAATCATGAAAAGAATGAAGACTGTTACAAGAATC-ATTGCTTGTCTTATTAAAGGTAT
** *
136564 GAACTTTGATTAAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATAT
65 GAACTCAGATTAAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAAAAT
* * *
136629 CATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCACTACT
130 CATTTATCCT-AAGAGGAGAATGTGCTTATAGTGCCAAATCACAAAATGAATGAAGATCACTACG
* * * * *
136694 AGAATCCATGGTTGTTTCATTTGAGGCACGAACATAGACTTCACAAAAATTGGTGGGAAAAACAC
194 AGAATCCATGGTTGTCTCATTTGAGGCACAAACATAGACTTCAAAAAAATTGATGGAAAAAACAC
* * * *
136759 CTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAATACTATGTTTATAGTGCTT
259 CTTTCTTGCAAAACCAAAGCATCAATATCGTATATACTAATGAGAAGACTATGTTTATAGTGCCT
* * * *
136824 AATCCT-GAAAAGGATGGGCATCTAG-GTGAGTATTCAGGTTTTTCATATTTCAGGGACAAACTT
324 AAT-CTGGAAAAGGATGGGCAT-TAGTATGAGTATTCAGGTTTATCATATTTAAGAGACAAACTT
* *
136887 TGATTCTATCAAAAATAGTGGAAAGAAAA-GCATTTCTCGCGACACCAAAGCATCAAAGTCACGT
387 TGATTCTATCAAAAACAGTGG--AGAAAATGCATTTCTCGCGACACCAAAGCATCAAAGCCACGT
* **
136951 ATCCTAATGAAAAGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGTTTCTTACAAGAA
450 ATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTCTTACAAGAA
* * * * ***
137016 TCGACGCTTGGCTTATTTATGGTATGAACTTTGATATA-AGGGAAAATAGGGTAAGGAATGGATT
515 TCGACGCTTAGCTT-TTTAAGGTATGAACTTTGATATATA-GGAAAATAGGGCAAAGAAAAAATT
** * * *
137080 TGCATGCAAAAGAAAATCATCGATATCATTTATGCTAATGAGGAGAATGTGTTTACGGTGCCTAA
578 CCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAA
* * *
137145 TCACAAAAAGAATAAAGATCATTACTAGAATCCCTGTTTGTCTCATTTGAGGCATGAACTTAGAC
643 TCACAAAAAGAATAAAGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
137210 TTTACTAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCAA
708 TTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCAA
* * * * *
137275 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGA
773 ATAAGAAGACTATGTGTATGGTGCCGAATCCTAAAAAGAACGGGGA
137321 TTAGTACGAG
Statistics
Matches: 708, Mismatches: 105, Indels: 13
0.86 0.13 0.02
Matches are distributed among these distances:
829 122 0.17
830 225 0.32
831 100 0.14
832 261 0.37
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (829 bp):
GCTTCCAAATCATGAAAAGAATGAAGACTGTTACAAGAATCATTGCTTGTCTTATTAAAGGTATG
AACTCAGATTAAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAAAATC
ATTTATCCTAAGAGGAGAATGTGCTTATAGTGCCAAATCACAAAATGAATGAAGATCACTACGAG
AATCCATGGTTGTCTCATTTGAGGCACAAACATAGACTTCAAAAAAATTGATGGAAAAAACACCT
TTCTTGCAAAACCAAAGCATCAATATCGTATATACTAATGAGAAGACTATGTTTATAGTGCCTAA
TCTGGAAAAGGATGGGCATTAGTATGAGTATTCAGGTTTATCATATTTAAGAGACAAACTTTGAT
TCTATCAAAAACAGTGGAGAAAATGCATTTCTCGCGACACCAAAGCATCAAAGCCACGTATCCTA
ATGAAAAGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTCTTACAAGAATCGACG
CTTAGCTTTTTAAGGTATGAACTTTGATATATAGGAAAATAGGGCAAAGAAAAAATTCCCATGCA
AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAA
AGAATAAAGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
AATTGGTGAGAAAAATGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCAAATAAGAAG
ACTATGTGTATGGTGCCGAATCCTAAAAAGAACGGGGAAAGTATTTTGG
Found at i:137572 original size:477 final size:477
Alignment explanation
Indices: 136485--139174 Score: 3548
Period size: 477 Copynumber: 5.6 Consensus size: 477
136475 AAAAAGAACG
* * * * * * *
136485 GGGAAAGTATTTTGGGCTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGTATCGATGCTTGT
1 GGGAATGTGTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
*
136550 CTTATTTAAGGTATGAACTTTGATTAAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
66 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
* *
136615 AAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
131 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAA
* * * * *
136680 TGAAGATCACTACTAGAATCCATGGTTGTTTCATTTGAGGCACGAACATAGACTTCACAAAAATT
196 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATT
* *
136745 GGTGGGAAAAACACCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAATACTA
261 GGTGGGAAAAATACCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * * * * * *
136810 TGTTTATAGTGCTTAATCCTGAAAAGGATGGGCATCTAG-GTGAGTATTCAGGTTTTTCATATTT
326 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT-TAGTATGAGTATTCATGTTTGTCATATTT
* * * * *
136874 CAGGGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCATTTCTCGCGACACCAAAGCA
390 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
136939 TCAAAGTCACGTATCCTAATGAA
455 TCAATGTCATGTATCCTAATGAA
** * * ** * * *
136962 AAGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGTTTCTTACAAGAATCGACGCTTGG
1 GGGAATGTGTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
* * * * * ** **
137027 CTTATTTATGGTATGAACTTTGATATAAGGGAAAATAGGGTAAGGAATGGATTTGCATGCAAAAG
66 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
* * * *
137092 AAAATCATCGATATCATTTATGCTAATGAGGAGAATGTGTTTACGGTGCCTAATCACAAAAAGAA
131 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAA
* * * *
137157 TAAAGATCATTACTAGAATCCCTGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAATT
196 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATT
* * *
137222 GGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCAAATGAGAAGACTA
261 GGTGGGAAAAATACCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * *
137287 TGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTACGAGTATTCATGTTTGTCATATTTA
326 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTA
* *
137352 AGAGACAAACTTTGACTCTATCAAAAATGGTGG-AAGAAAAGCTTTTCTTGCGACACCAAAGCTT
391 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
137416 CAATGTCATGTATCCTAATGAA
456 CAATGTCATGTATCCTAATGAA
* * * *
137438 GGGAATGTGTTTTTCGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTTCAAGAATCAATGCTTGC
1 GGGAATGTGTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
* * * * * * *
137503 CTTTTTTAAGGTGTGAACTTTGATTTAAAGGAAAAAAAGGGCAAAGAAAGGATTTCCATGTAGAA
66 CTTATTTAAGGTATGAACTTTGATTTAAAGG-AAAATAGGGCAAAGAAAAGATTCCCATGCAAAA
* * *
137568 GAAAAT-ACTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATA
130 GAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATG
* * *
137632 AATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAA
194 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAA
* * * * * *
137697 TTGG-GAGGAAAAATACCTGTCCTACATAACCAAAGCATCAATAT-GATGCATCCTATTGAGAAG
259 TTGGTG-GGAAAAATACCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAG
* * * * **
137760 ACTATATTTATGGTGCCTAATCCTGAAAAAAACGGGGATTAGTATGAGTATACATGTTTGTCGCA
322 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATA
* * * * * *
137825 TTTAAAAGTCAAACTTTGATTCAATCGAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACCAAA
387 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
137890 GCATCAATGCCGTTTATCCCAATGAA
452 GCATCAATGTCATGTATCCTAATGAA
* * * **
137916 GGGAAAGTGTTTTGGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATAAATGCTTGT
1 GGGAATGTGTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
*
137981 CTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
66 CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
*
138046 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAATTGAA
131 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAA
* * * * * *
138111 TGAAGATCATTATTGGAATCCACGTTTGTTTCATTTGAGGCA-CAACCATAGACTTTACAAAACT
196 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA-CATAGACTTTACAAAAAT
* ** * *
138175 TGGTGGGAAAAATGCCTTTCTTGGGAAACCAAAGCATCAATATTGTGTATCTTAATGAGAAGACT
260 TGGTGGGAAAAATACCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACT
* * * * * * * *
138240 GTGTTTATGGTGCCTAATCTTGAAAAGGATGGGCATCAGTGTGAGTGTTCATGTTTTTCATATTT
325 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTT
* * * * * * **
138305 AAGAGATAAACTTTGATTCTATCTAAAACGGGGGAAAGAAAAGCATTTCTCGTAACACCAAAGCA
390 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
138370 TCAATGTCATGTATCCTAATGAA
455 TCAATGTCATGTATCCTAATGAA
* * *
138393 GGGAATGTGCTTTTGGCTTCCTAG-CCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTGG
1 GGGAATGTGTTTTTGGCTTCCCAGTCC-TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTG
* * * *
138457 CCTTATTTAAGGTATGAACTTTGATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAA
65 TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGC--AA
138522 AAGAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTACAGTGCCTAATCACAAAA
128 AAG-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAA
* * * * *
138586 TGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAA
192 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAA
** * * **
138651 AATTCATGGGAAAAATGCCTATCTTG-AGAAACCAAAGCATCAATATTATGTATCCTAATGAGAA
257 AATTGGTGGGAAAAATACCTTTCTTGCA-AAACCAAAGCATCAATATCGTGTATCCTAATGAGAA
* * * *
138715 GGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT
321 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCAT
* * *
138780 ATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATACCAA
386 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* *
138845 AGCTTCAATGTCCTGTATCCTAATGAA
451 AGCATCAATGTCATGTATCCTAATGAA
* * *
138872 AGGATTGTGTTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTG
1 GGGAATGTG-TTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTG
* * *
138937 TCTTATTTAAGGTATGAATTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATA
65 TCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAA
* *
139002 GAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAATTGA
130 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGA
* * * ** **
139067 ATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACATAGACTTTACAAAAA
195 ATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAA
*
139131 TTGGTGGGAAAAATACCTTTCTT-CTGAAACCAAAGCATCAATAT
259 TTGGTGGGAAAAATACCTTTCTTGC-AAAACCAAAGCATCAATAT
139175 TATGTGATGA
Statistics
Matches: 1911, Mismatches: 280, Indels: 43
0.86 0.13 0.02
Matches are distributed among these distances:
476 136 0.07
477 1105 0.58
478 250 0.13
479 274 0.14
480 144 0.08
481 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (477 bp):
GGGAATGTGTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
CTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAA
TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATT
GGTGGGAAAAATACCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTA
AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
CAATGTCATGTATCCTAATGAA
Found at i:140817 original size:12 final size:11
Alignment explanation
Indices: 140798--140873 Score: 79
Period size: 12 Copynumber: 6.9 Consensus size: 11
140788 AGAGAAAGAA
140798 GAGATAGGAGG
1 GAGATAGGAGG
140809 GACGATAGGAGG
1 GA-GATAGGAGG
140821 AGAGATAGGA--
1 -GAGATAGGAGG
*
140831 GAGATAGTA--
1 GAGATAGGAGG
140840 GAGATAGGAGG
1 GAGATAGGAGG
140851 GATGATAGGAGG
1 GA-GATAGGAGG
140863 AGAGATAGGAG
1 -GAGATAGGAG
140874 AGATAATAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
9 16 0.28
11 4 0.07
12 33 0.58
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.47, T:0.12
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:140832 original size:9 final size:9
Alignment explanation
Indices: 140818--140878 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
140808 GGACGATAGG
140818 AGGAGAGAT
1 AGGAGAGAT
140827 AGGAGAGAT
1 AGGAGAGAT
*
140836 AGTAGAGAT
1 AGGAGAGAT
*
140845 AGGAGGGAT
1 AGGAGAGAT
* *
140854 --GATAG-G
1 AGGAGAGAT
140860 AGGAGAGAT
1 AGGAGAGAT
140869 AGGAGAGAT
1 AGGAGAGAT
140878 A
1 A
140879 ATAGAGAGAG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.43, C:0.00, G:0.44, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:140847 original size:42 final size:42
Alignment explanation
Indices: 140788--140907 Score: 186
Period size: 42 Copynumber: 2.9 Consensus size: 42
140778 TAGCCCTCAA
* * *
140788 AGAGAAAGAAGAGATAGGAGGGACGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
140830 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * *
140872 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGA
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGA
140908 AGAGAAGAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:140882 original size:12 final size:12
Alignment explanation
Indices: 140842--140887 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
140832 AGATAGTAGA
*
140842 GATAGGAGGGAT
1 GATAGGAGAGAT
140854 GATAGGAGGAGA-
1 GATAGGA-GAGAT
140866 GATAGGAGAGAT
1 GATAGGAGAGAT
*
140878 AATA-GAGAGA
1 GATAGGAGAGA
140888 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:141798 original size:34 final size:35
Alignment explanation
Indices: 141760--141826 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
141750 CCTTACAACA
141760 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
141794 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
141827 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:142523 original size:13 final size:13
Alignment explanation
Indices: 142505--142529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
142495 ACTGAAGTAA
142505 TGTATCGATACAT
1 TGTATCGATACAT
142518 TGTATCGATACA
1 TGTATCGATACA
142530 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:142935 original size:10 final size:10
Alignment explanation
Indices: 142916--142946 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
142906 GTATCGATAC
142916 ATGAACAGTG
1 ATGAACAGTG
*
142926 ATGAATAGTG
1 ATGAACAGTG
142936 ATGAACAGTG
1 ATGAACAGTG
142946 A
1 A
142947 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:143034 original size:53 final size:53
Alignment explanation
Indices: 142970--143106 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
142960 CTACTACCAA
142970 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* * *
143023 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCT
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
143076 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
143107 TATGCAATTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:143139 original size:20 final size:20
Alignment explanation
Indices: 143076--143146 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
143066 GCCAATGTCT
**
143076 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
143096 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
143116 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
*
143136 TGTATTGATAC
1 TGTATCGATAC
143147 TTTTCAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 3 0.07
20 37 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:143208 original size:21 final size:21
Alignment explanation
Indices: 143184--143226 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
143174 AAGTCAACCT
143184 TATGTATTAATACCAATA-GTA
1 TATGTATTAATA-CAATACGTA
*
143205 TATGTATTGATACAATACGTA
1 TATGTATTAATACAATACGTA
143226 T
1 T
143227 TTTTACTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (21 bp):
TATGTATTAATACAATACGTA
Found at i:149778 original size:954 final size:950
Alignment explanation
Indices: 147731--155648 Score: 9931
Period size: 954 Copynumber: 8.3 Consensus size: 950
147721 GTCATCATTA
* * * * *
147731 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCAGTGTGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-GTCAGTATGAG
* * *
147796 TGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAAAAAAGT
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAATA--GTGGAAAGAAAAGC
*
147860 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCC
128 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCC
* * * * * *
147925 TAATCTTGAAAAAAATGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTATGGTATGAACTTT
193 CAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* * *
147990 GATTT--GGAAAATAGTGCAAAGAAAGGATTTCCAT--TAAA-AAAA--ATCAATATCATTTATC
258 GATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * *
148048 CTAATAAGGAGAATGTGTTTACAGTGCTTAATCACAAAATAAATGAAGATCATTACTAGAATCCA
323 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* ** * *
148113 TGTTTGTCTCATATGAGGCATGAACTTAGACTTCCCTAAAATTGGTGGAAAAAATAG-CTTTCTT
388 TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT-GCCTTTCTT
*
148177 GCGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
452 GAGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
** * * * *
148241 GAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCATATTCAAGAGATAAAC-TTGACTCTA
516 GAAAAGAATGGGGATTAGTATGAGTA-TAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTA
* * * * *
148305 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCACGTATCCTAGTT
580 TCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * **
148370 AA-GGAATGTG-TTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGTTTGTTACAAGAATCGATGCT
645 AAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCT
* * * * * *
148433 TGGCTTGTTTATGCTATGAACTTTGATTTAAGGGAAAATAGGGTAAAGAAAGGATTTCCATGCAA
710 TGTCTTATTTAAGGTATGAACTTTGATTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* *
148498 AAGAAAAT-ACTCAATATCATTTATCCTAATGAAGAGAATCTGTTTATAGTGCCTAATCACAAAA
774 AAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * **
148562 TGAATGAACATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCA-TTACTTAGACTTTACAAA
838 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* *
148626 AATTGGTGGGAAAACTGCCTTTCTTGCG-AACCAAAAGCATCAACA-TG
903 AATTGGTGGGAAAAATGCCTTTCTTGCGAAACC-AAAGCATCAATATTG
* * * ** *
148673 ATGTATCCTAATAAGAAGACTATGGTTATGGTGCCTAATCCTGAAAAGAACAGGGACTAGTATGA
1 -TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGTC-AGTATGA
* * * * * *
148738 GT-TTACACGTTTGTCATTTTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAATAAAAG
64 GTATT-CATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATC-AAAATAGTGGAAAGAAAAG
* * * * *
148802 CTTTTCTTGC-AGCACAAAAGCATCAAAGTCAAT-TATCCTAATGAAGGG-ATAGTGATTTTGGC
127 CATTTCTCGCGA-CACCAAAGCATCAATGTC-ATGTATCCTAATGAAGGGAAT-GTGTTTTTGGC
* * * * * *
148864 TTCCCAGTCTTGAAAAGAATGGAGATTGTTACGAGAATCAACGCTTGTCTTATTTAAGGTATGAA
189 TTCCCAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAA
* * * * *
148929 CTTTGATTCGAAAGAAAATAGGGCAGAGAAAAGATTTCCATGCAACAGAAAATCGTCAATATCAT
254 CTTTGATT-TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* ** * *
148994 TTATCCTAAGGAGGAGAATGTGTTTATAGTGGCCTAATCATGAAATGAATTAAGATCATTACTAT
318 TTATCCTAATGAGGAGAATGTGTTTATAGT-GCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * *
149059 AATCCATGTTTGTCTCATTTGAGGCATTATCTTAGACTTTACAAAAATTTGAGGGAAAAATGCCT
382 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* ** * *
149124 TTCTTGTGAAACCAAAGCATCAATACAATGTATCCTAATAAGAAGACAATGTTTATGGTGCCTAA
447 TTCTTGAGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* ** ** *
149189 TCTTGAAAAGAATGGGGATTAGTACAAGTAT-ATGTGTTTGTTGTATTTAAAAGACAAACTTTGA
512 TCCTGAAAAGAATGGGGATTAGTATGAGTATAATGT-TTT-TCATATTTAAGAGACAAACTTTGA
* * * * *
149253 TTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAACGTCATTTATCC
575 CTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
149318 TAATGAAGGGAAAGTG-TTTTGGGCTTCCCAGCCCTGAAAAGAAGGGAGACTGTTACGAGAATCG
640 TAATGAAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCG
* *
149382 ATGCTTATCTTATTTAAGGTATGAACTTTGATTTCAAAGAAAATAGGGCAAAGAAAAGA-TTCCT
705 ATGCTTGTCTTATTTAAGGTATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCC-
* *
149446 ATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTTCCTAATCA
768 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
149511 CAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTAAGGCACGAACATAGACTCT
833 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* *
149576 ACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAGCAACAATATTG
898 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATTG
* ** * * *
149629 TGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGGATGGGCGTCAGTGTGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-GTCAGTATGAG
*
149694 TATTCATGTTTTTCATATTTAAGAGATAAACTTTGATTCTATCAAAATAGTGGAAAGAAAAGCAT
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAATAGTGGAAAGAAAAGCAT
* * * * *
149759 TTCTCGTGACACCAAAGCATCAAAGTCATGTATCTTATTGAAGGGAATGTGTTTTTGGCTTCCTA
130 TTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCA
** * * * **
149824 GTCTTGAAAAGAATGGAGTTTCTTACAAGAATCGACGCTTGGCTTATTTGTGGTATGAACTTTGA
195 GTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGA
* * * ** * *
149889 TTTAAGGGATAATAGGGTAAGGAATGGATTTGCATGCAAAAGAAAATCATCGATATCATTTATCC
260 TTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
** * * * * *
149954 TAACAAGGAGAATGTATTTATAGTGCCTAATCAGAAATTGAATGAAGATCATTACCAGAATCCAA
324 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* *
150019 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAAAATGCCATTTCCTG
389 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC-TTTCTTG
* ** * * * *
150084 CGAGGCCAAAGCATTAATATGATGTGTCCTAATGAGAAGACTATGTTTATGGTGGCTAATCCTAA
453 AGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* ** * * * *
150149 AAAGAACT-GGGATTAGTATGAGTTCTCCTATTTGTT-GTATTTAAGAGACAAACATTGATTCTA
518 AAAGAA-TGGGGATTAGTATGAG-TATAATGTTT-TTCATATTTAAGAGACAAACTTTGACTCTA
*
150212 TCAAAAACGGTGAAAAGAAAAGC--TT-TTGCGACACCAAAGCATCAATGTCATTTATCCTAATG
580 TCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
150274 AAGGGAAAGT--TTTTTGGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGG
645 AAGGGAATGTGCTTTTT-GGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGC
* * * *
150337 TTGTCTTATTTATGGCATGGAACTTTGATTTGAAGGAAAATAGGGCAAA-AACAGGATTTCCAAG
709 TTGTCTTATTTAAGGTAT-GAACTTTGATTT-AAGGAAAATAGGGCAAAGAA-AAGATTTCCATG
* * * * *
150401 CAAAAGAAGATCGTCAATGTCATTTATGCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAA
771 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
150466 AATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA
836 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * **
150531 AAAATTGGTAGGAAAAATGCCTTTCTTGCGAAACCAAAGCACCAATATCA
901 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATTG
* * * * *
150581 TGTATCCTAATGAGAAGACTATGTTTATTGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG-TCAGTATGAG
* * * * *
150646 TATTCATGTTTGTCATATTTAAGAGACAAACTTTGACTCTATAAAAAATGGTGGAAAGAAAAGCT
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTAT-CAAAATAGTGGAAAGAAAAGCA
* * * * * *
150711 TTTCTTGCGACACCAAAGCTTCAATGTCCTGTATCCTAATGAAAGGATTGGGTTTTTTGGCTTCC
129 TTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGCTTCC
* * * *
150776 CAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGAGGCTTGTCTTATTTAAGGTATGAATTTT
193 CAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* * *
150841 GATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATAGAAAATCATCAAAATCATTTAT
258 GATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * *
150906 CCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAATTGAATGAAGATCATT-CTTAGCATC
322 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAATC
* * ** ** * *
150970 CACGTTTGTTTCATTTGAGATACAAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCT
386 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
** * * * *
151035 TCTGAAACCAAAGCATCAATATTATGTATCTTATTGAGAAGGCTATGTTTATGGTGCCTAATCCT
451 TGAGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * ** * * * *
151100 AAAAAGGATGGGCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTA
516 GAAAAGAATGGGGATTAGTATGAGT-ATAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTA
* *
151165 TCAACAACGGTGGAAGAA-AAAAG-TATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTA
580 TCAAAAACGGT-GAA-AAGAAAAGCT-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * *
151228 ATGAAGGGAATGTGC-TTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTGCAAGAATCGAT
642 ATGAAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGAT
* * *
151292 GCTGGCCTTATTTAAGGTATGAACTTTGATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATG
707 GCTTGTCTTATTTAAGGTATGAACTTTGATTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATG
*
151357 CTAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
771 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * *
151421 AATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACT
836 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
** * * *
151486 AAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG
901 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATTG
* * *
151536 TGTATCCTAATGAGAAGGCAATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG-TCAGTATGAG
* * * *
151601 TATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAA-ACGGTGGAAAGAAAAGC
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAATA--GTGGAAAGAAAAGC
* * * * * * **
151665 TTTTCTTGTGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCC
128 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCC
* * * * * * * *
151730 CAGTCCTGAAAAGAATGGAGATTGTTACAAGAATCAAGGCTTGCTTTTTTTAAGATATGAACTTT
193 CAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* * * *
151795 GATTTAAAGGAAAGTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTA
258 GATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTTA
* *
151859 TCCTAATGAGGAGAATGTGTTTGTAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATC
321 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
151924 CATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCATGTCC
386 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * *
151989 T-ACATAACCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCT
451 TGAGA-AACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
*
152053 TGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCT
515 TGAAAAGAATGGGGATTAGTATGAGTA-TAATGTTTTTCATATTTAAGAGACAAACTTTGACTCT
* * * *
152118 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAAT
579 ATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * *
152183 GAAAGGATTGTGTTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGC
644 GAAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGC
* *
152248 TTGTCTTATTTAAGGTATGAATTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCA
709 TTGTCTTATTTAAGGTATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * *
152313 ATAGAAAATCATCAAAATCATTTATCCTAAGGAGGAGAATGTGTTTACAGTGCCTAATCACAAAT
773 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * ** * *
152378 TGATTGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACATAGACTTTACAA
838 TGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* *
152442 AAATTGGTGGGAAAAATACCTTTCTT-CAGAAACCAAAGCATCAATATTA
902 AAATTGGTGGGAAAAATGCCTTTCTTGC-GAAACCAAAGCATCAATATTG
* * * * * *
152491 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGTATCGGTGTGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-GTCAGTATGAG
* ** * *
152556 TGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAGT
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAA-AATAGTGG-AAAGAAAAGC
*
152621 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCC
128 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCC
* * *
152686 TAGTCTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTT
193 CAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* *
152751 GATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATGCTAAA-AAAATCATCAATATCATTTAT
258 GATTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* *
152815 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGATTCC
322 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * ** *
152880 ATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTCTTGGGAAAAATGCCTATCTT
387 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
* * *
152945 GAGAAACCAAAGCATCAATATCG-TGTATCCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCT
452 GAGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
153009 GAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTA
516 GAAAAGAATGGGGATTAGTATGAGTA-TAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTA
* * * *
153074 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATG
580 TCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
** *
153139 AAAAGAATGTG-TTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCAATGCT
645 AAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCT
* * * *
153203 TG-CTTTTTTTAAGATATGAACTTTGATTTAAAGGAAAGTAAGGCAAAGAAAAGATTTCCATGCA
710 TGTC-TTATTTAAGGTATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * ** *
153267 AAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTTCTTACAAA
773 AAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
*
153331 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAA
837 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * *
153396 AAATTGGGGGGAAAAATGCATGTCCTAC-ATAACCAAAGCATCAATA-TG
902 AAATTGGTGGGAAAAATGCCTTTCTTGCGA-AACCAAAGCATCAATATTG
** * * *
153444 ATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGA
1 -TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG-TCAGTATGA
* *
153509 GTATTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGC
64 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATC-AAAATAGTGGAAAGAAAAGC
* * * * * *
153574 TTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTC
128 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGCTTC
* * *
153639 CCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTT
192 CCAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
* * *
153704 TGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATAGAAAATCATCAAAATCATTTA
257 TGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * *
153769 TCCTAATGAGGAGAATGTGTTTACAGTTCCTAATCACAAATTGAATGAAGATCATT-CTTAGCAT
321 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAAT
* * ** ** * * *
153833 CCACGTTTGTTTCATTTGAGATACAAACATAGACTTTAAAAAAATTGGTGGGAAAAATACCTTTC
385 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
** * * * *
153898 TTCTGAAACAAAAGCATCAATATTATGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCC
450 TTGAGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * ** * * * *
153963 TAAAAAGGATGGGCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCT
515 TGAAAAGAATGGGGATTAGTATGAGT-ATAATGTTTTTCATATTTAAGAGACAAACTTTGACTCT
* * *
154028 ATCAACAACGGTGGAAAAAAAAAG-TATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTA
579 ATCAAAAACGGT-GAAAAGAAAAGCT-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * *
154092 ATGAAGGGAATGTGC-TTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATTGCAAGAATCGAT
642 ATGAAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGAT
* * *
154156 GCTGGCCTTATTTAAGGTATGAACTTTGATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATG
707 GCTTGTCTTATTTAAGGTATGAACTTTGATTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATG
*
154221 CTAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
771 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * *
154285 AATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACT
836 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
** * * *
154350 AAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG
901 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATTG
* * *
154400 TGTATCCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG-TCAGTATGAG
* * * *
154465 TATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAA-ACGGTGGAAAGAAAAGC
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAATA--GTGGAAAGAAAAGC
* * * * * **
154529 TTTTCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCC
128 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCC
* * * * * *
154594 CAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTT
193 CAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* * * *
154659 GATTTAAAGGAAAGTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTA
258 GATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTTA
* *
154723 TCCTAATGAGGAGAATGTGTTTGTAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATC
321 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
154788 CATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCATGTCC
386 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * *
154853 T-ACATAACCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCT
451 TGAGA-AACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
*
154917 TGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCT
515 TGAAAAGAATGGGGATTAGTATGAGTA-TAATGTTTTTCATATTTAAGAGACAAACTTTGACTCT
** * * *
154982 ATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAAT
579 ATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * *
155047 GAAAGGATTGTGTTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGC
644 GAAGGGAATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGC
* *
155112 TTGTCTTATTTAAGGTATGAATTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCA
709 TTGTCTTATTTAAGGTATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * *
155177 ATAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTTCCTAATCACAAAT
773 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * ** * * *
155242 TGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACATAGACTTTAAAA
838 TGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * *
155306 AAATTGGTGGGAAAAATACCTTTCTT-CTGAAACAAAAGCATCAATATTA
902 AAATTGGTGGGAAAAATGCCTTTCTTGC-GAAACCAAAGCATCAATATTG
* * * * * *
155355 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAG
1 TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-GTCAGTATGAG
* * ** * *
155420 TGTTCATGTTTTTCATATTTAAGTGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAGT
65 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAA-AATAGTGG-AAAGAAAAGC
*
155485 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCC
128 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCC
* * *
155550 TAGTCTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTT
193 CAGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
*
155615 GATTTATAGGAAAATAGGGCAAAGAAAGGATTTC
258 GATTTA-AGGAAAATAGGGCAAAGAAAAGATTTC
155649 TGATGAAAAC
Statistics
Matches: 6038, Mismatches: 816, Indels: 229
0.85 0.12 0.03
Matches are distributed among these distances:
942 6 0.00
943 213 0.04
944 6 0.00
946 25 0.00
948 2 0.00
949 4 0.00
950 8 0.00
951 147 0.02
952 477 0.08
953 516 0.09
954 2136 0.35
955 1858 0.31
956 532 0.09
957 104 0.02
958 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (950 bp):
TGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGTCAGTATGAGT
ATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAATAGTGGAAAGAAAAGCATT
TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAG
TCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGAT
TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGAGA
AACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
GAATGGGGATTAGTATGAGTATAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAA
ACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
ATGTGCTTTTTGGCTTCCCAGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCTT
ATTTAAGGTATGAACTTTGATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
GGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATTG
Found at i:151622 original size:477 final size:475
Alignment explanation
Indices: 147731--155648 Score: 10112
Period size: 478 Copynumber: 16.6 Consensus size: 475
147721 GTCATCATTA
* * * * * * *
147731 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCAGTGTGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* *
147796 TGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAG-T
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* *
147860 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCC
131 -TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCC
* * * * *
147925 TAATCTTGAAAAAAATGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTATGGTATGAACTTT
195 CAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* * *
147990 GATTT--GGAAAATAGTGCAAAGAAAGGATTTCCAT-TAAA-AAAA--ATCAATATCATTTATCC
260 GATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAGAAAATCATCAATATCATTTATCC
* * * *
148049 TAATAAGGAGAATGTGTTTACAGTGCTTAATCACAAAATAAATGAAGATCATTACTAGAATCCAT
325 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* ** * *
148114 GTTTGTCTCATATGAGGCATGAACTTAGACTTCCCTAAAATTGGTGGAAAAAATAG-CTTTCTTG
390 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT-GCCTTTCTTG
*
148178 CGAAACCAAAGCATCAATATCG
454 AGAAACCAAAGCATCAATATCG
**
148200 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
148265 TATTCATGTTTGTCATATTCAAGAGATAAAC-TTGACTCTATCAAAAACGGTGGAAAGAAAAGCT
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * *
148329 TTTCTTGTGACACCAAAGCATCAATGTCACGTATCCTAGTTAA-GGAATGTGTTTTTGGCTTCCT
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCC
** * * * *
148393 AGTCTTGAAAAGAATGGAGTTTGTTACAAGAATCGATGCTTGGCTTGTTTATGCTATGAACTTTG
196 AGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTG
* *
148458 ATTTAAGGGAAAATAGGGTAAAGAAAGGATTTCCATGCAAAAGAAAAT-ACTCAATATCATTTAT
261 ATTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCA-TCAATATCATTTAT
* * *
148522 CCTAATGAAGAGAATCTGTTTATAGTGCCTAATCACAAAATGAATGAACATCATTACTAGAATCC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
148587 AAGTTTGTCTCATTTGAGGCAT-TACTTAGACTTTACAAAAATTGGTGGGAAAACTGCCTTTCTT
388 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
* *
148651 GCG-AACCAAAAGCATCAACAT-G
453 GAGAAACC-AAAGCATCAATATCG
* * ** *
148673 ATGTATCCTAATAAGAAGACTATGGTTATGGTGCCTAATCCTGAAAAGAACAGGGACTAGTATGA
1 -TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * * *
148738 GT-TTACACGTTTGTCATTTTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAATAAAAG
65 GTATT-CATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * *
148802 CTTTTCTTGC-AGCACAAAAGCATCAAAGTCAAT-TATCCTAATGAAGGG-ATAGTGATTTTGGC
129 CTTTTCTTGCGA-CACCAAAGCATCAATGTC-ATGTATCCTAATGAAGGGAAT-GTGTTTTTGGC
* * * * *
148864 TTCCCAGTCTTGAAAAGAATGGAGATTGTTACGAGAATCAACGCTTGTCTTATTTAAGGTATGAA
191 TTCCCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAA
* * * *
148929 CTTTGATTCGAAAGAAAATAGGGCAGAGAAAAGATTTCCATGCAACAGAAAATCGTCAATATCAT
256 CTTTGATT-TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AGAAAATCATCAATATCAT
* ** * *
148994 TTATCCTAAGGAGGAGAATGTGTTTATAGTGGCCTAATCATGAAATGAATTAAGATCATTACTAT
319 TTATCCTAATGAGGAGAATGTGTTTATAGT-GCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * *
149059 AATCCATGTTTGTCTCATTTGAGGCATTATCTTAGACTTTACAAAAATTTGAGGGAAAAATGCCT
383 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* *
149124 TTCTTGTGAAACCAAAGCATCAATA-CAA
448 TTCTTGAGAAACCAAAGCATCAATATC-G
* * * **
149152 TGTATCCTAATAAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTACAAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
** * * *
149217 TA-T-ATGTGTTTGTTGTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAG
66 TATTCATGT-TTT-TCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * *
149280 CTTTTCTTGCGACACCAAAGCACCAACGTCATTTATCCTAATGAAGGGAAAGTGTTTTGGGCTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* * * * **
149345 CCAGCCCTGAAAAGAAGGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGTATGAACTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
*
149410 TGATTTCAAAGAAAATAGGGCAAAGAAAAGA-TTCCTATGCAAAAGAAAATCATCAATATCATTT
259 TGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCC-ATGC-AAAGAAAATCATCAATATCATTT
* * *
149474 ATCTTAATGAGGAGAATGTGTTTATAGTTCCTAATCACAAAACGAATGAAGATCATTACTAGAAT
321 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
149539 CCATGTTTGTTTCATTTAAGGCACGAACATAGACTCTACAAAAATTGGTGGGAAAAATACCTTTC
386 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * *
149604 TTGCGAAACCAAAGCAACAATATTG
451 TTGAGAAACCAAAGCATCAATATCG
* * * * * *
149629 TGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGGATGGGCG-TCAGTGTGA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-GATTAGTATGA
*
149693 GTATTCATGTTTTTCATATTTAAGAGATAAACTTTGATTCTATCAAAATA--GTGGAAAGAAAAG
65 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGAAAAG
* * * * * *
149756 CATTTCTCGTGACACCAAAGCATCAAAGTCATGTATCTTATTGAAGGGAATGTGTTTTTGGCTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* ** * * * **
149821 CTAGTCTTGAAAAGAATGGAGTTTCTTACAAGAATCGACGCTTGGCTTATTTGTGGTATGAACTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
* * * ** * *
149886 TGATTTAAGGGATAATAGGGTAAGGAATGGATTTGCATGCAAAAGAAAATCATCGATATCATTTA
259 TGATTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAATATCATTTA
** * * * *
149951 TCCTAACAAGGAGAATGTATTTATAGTGCCTAATCAGAAATTGAATGAAGATCATTACCAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* *
150016 CAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAAAATGCCATTTC
387 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC-TTTC
* * ** *
150081 CTGCGAGGCCAAAGCATTAATAT-G
451 TTGAGAAACCAAAGCATCAATATCG
* * *
150105 ATGTGTCCTAATGAGAAGACTATGTTTATGGTGGCTAATCCTAAAAAGAACT-GGGATTAGTATG
1 -TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGGATTAGTATG
* * * * *
150169 AGT-TCTCCTATTTGTT-GTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGAAAAGAAA
64 AGTAT-TCATGTTT-TTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* *
150232 AGC--TT-TTGCGACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGT-TTTTTGGGC
127 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT-GGC
* * * * *
150293 TTCCCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGGTTGTCTTATTTATGGCATGGA
191 TTCCCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTAT-GA
* * * * *
150358 ACTTTGATTTGAAGGAAAATAGGGCAAA-AACAGGATTTCCAAGCAAAAGAAGATCGTCAATGTC
255 ACTTTGATTT-AAGGAAAATAGGGCAAAGAA-AAGATTTCCATGC-AAAGAAAATCATCAATATC
* * *
150422 ATTTATGCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATAAAGATCATTACTA
317 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
*
150487 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAAAATGCC
382 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * *
150552 TTTCTTGCGAAACCAAAGCACCAATATCA
447 TTTCTTGAGAAACCAAAGCATCAATATCG
* * *
150581 TGTATCCTAATGAGAAGACTATGTTTATTGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
150646 TATTCATGTTTGTCATATTTAAGAGACAAACTTTGACTCTATAAAAAATGGTGGAAAGAAAAGCT
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * *
150711 TTTCTTGCGACACCAAAGCTTCAATGTCCTGTATCCTAATGAAAGGATTGGGTTTTTTGGCTTCC
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGCTTCC
* * * * *
150776 CAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGAGGCTTGTCTTATTTAAGGTATGAATTTT
195 CAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTT
* *
150841 GATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATAGAAAATCATCAAAATCATTTAT
260 GATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AGAAAATCATCAATATCATTTAT
* * *
150906 CCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAATTGAATGAAGATCATT-CTTAGCATC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAATC
* * ** ** * *
150970 CACGTTTGTTTCATTTGAGATACAAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCT
387 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
** **
151035 TCTGAAACCAAAGCATCAATATTA
452 TGAGAAACCAAAGCATCAATATCG
* * * * * * ** *
151059 TGTATCTTATTGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * *
151124 TGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAGAAAAAAG-
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-AGAAAAGC
* *
151188 TATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTC
130 T-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* * *
151253 CTAGTCTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
*
151318 TGATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATGCTAAA-AAAATCATCAATATCATTTA
259 TGATTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAATATCATTTA
* *
151382 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGATTC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * ** *
151447 CATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTCATGGGAAAAATGCCTATCT
387 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
151512 TGAGAAACCAAAGCATCAATATCG
452 TGAGAAACCAAAGCATCAATATCG
* * *
151536 TGTATCCTAATGAGAAGGCAATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
151601 TATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCT
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * **
151666 TTTCTTGTGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCC
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCC
* * * * * * *
151731 AGTCCTGAAAAGAATGGAGATTGTTACAAGAATCAAGGCTTGCTTTTTTTAAGATATGAACTTTG
196 AGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTG
* * * *
151796 ATTTAAAGGAAAGTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTAT
261 ATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCA-TCAATATCATTTAT
* *
151860 CCTAATGAGGAGAATGTGTTTGTAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATCC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
151925 ATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCT
388 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
*
151990 -ACATAACCAAAGCATCAATAT-G
453 GAGA-AACCAAAGCATCAATATCG
* * *
152012 ATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGA
1 -TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * *
152077 GTATTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGC
65 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * *
152142 TTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGCTTC
* * * *
152207 CCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
* *
152272 TGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATAGAAAATCATCAAAATCATTTA
259 TGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AGAAAATCATCAATATCATTTA
* * * * *
152337 TCCTAAGGAGGAGAATGTGTTTACAGTGCCTAATCACAAATTGATTGAAGATCATT-CTTAGCAT
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAAT
* * ** ** * *
152401 CCACGTTTGTTTCATTTGAGATACAAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTC
386 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* **
152466 TTCAGAAACCAAAGCATCAATATTA
451 TTGAGAAACCAAAGCATCAATATCG
* * * * * ** *
152491 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGTATCGGTGTGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * *
152556 TGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGC
* *
152620 TATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTC
130 T-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* * * *
152685 CTAGTCTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
*
152750 TGATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATGCTAAA-AAAATCATCAATATCATTTA
259 TGATTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAATATCATTTA
* *
152814 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGATTC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * ** *
152879 CATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTCTTGGGAAAAATGCCTATCT
387 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
152944 TGAGAAACCAAAGCATCAATATCG
452 TGAGAAACCAAAGCATCAATATCG
* * *
152968 TGTATCCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
153033 TATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCT
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * **
153098 TTTCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCC
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCC
* * * * *
153163 AGTCCTGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTG
196 AGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTG
* * * *
153228 ATTTAAAGGAAAGTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTAT
261 ATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCA-TCAATATCATTTAT
* ** *
153292 CCTAATGAGGAGAATGTGTTTGTAGTGCCTTCTTACAAAATGAATGAAGATCATTACTAGAATCC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
153357 ATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCT
388 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
*
153422 -ACATAACCAAAGCATCAATAT-G
453 GAGA-AACCAAAGCATCAATATCG
* * *
153444 ATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGA
1 -TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * **
153509 GTATTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGC
65 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * *
153574 TTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGCTTC
* * * *
153639 CCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
* *
153704 TGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATAGAAAATCATCAAAATCATTTA
259 TGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AGAAAATCATCAATATCATTTA
* * * *
153769 TCCTAATGAGGAGAATGTGTTTACAGTTCCTAATCACAAATTGAATGAAGATCATT-CTTAGCAT
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAAT
* * ** ** * * *
153833 CCACGTTTGTTTCATTTGAGATACAAACATAGACTTTAAAAAAATTGGTGGGAAAAATACCTTTC
386 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
** * **
153898 TTCTGAAACAAAAGCATCAATATTA
451 TTGAGAAACCAAAGCATCAATATCG
* * * * * ** *
153923 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * *
153988 TGTTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGC
* *
154052 TATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTC
130 T-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* * * *
154117 CTAGTCTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
*
154182 TGATTTATAGGAAAATAGGGCAAAGAAAGGATTTCCATGCTAAA-AAAATCATCAATATCATTTA
259 TGATTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAATATCATTTA
* *
154246 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGATTC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * ** *
154311 CATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTCATGGGAAAAATGCCTATCT
387 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
154376 TGAGAAACCAAAGCATCAATATCG
452 TGAGAAACCAAAGCATCAATATCG
* * *
154400 TGTATCCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
154465 TATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCT
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * **
154530 TTTCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCC
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCC
* * * * *
154595 AGTCCTGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTG
196 AGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTG
* * * *
154660 ATTTAAAGGAAAGTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTAT
261 ATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCA-TCAATATCATTTAT
* *
154724 CCTAATGAGGAGAATGTGTTTGTAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATCC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
154789 ATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCT
388 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
*
154854 -ACATAACCAAAGCATCAATAT-G
453 GAGA-AACCAAAGCATCAATATCG
* * *
154876 ATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGA
1 -TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * **
154941 GTATTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGC
65 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * *
155006 TTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGCTTC
* * * *
155071 CCAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
* *
155136 TGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAATAGAAAATCATCAAAATCATTTA
259 TGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AGAAAATCATCAATATCATTTA
* * * *
155201 TCCTAATGAGGAGAATGTGTTTACAGTTCCTAATCACAAATTGAATGAAGATCATT-CTTAGCAT
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAAT
* * ** ** * * *
155265 CCACGTTTGTTTCATTTGAGATACAAACATAGACTTTAAAAAAATTGGTGGGAAAAATACCTTTC
386 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
** * **
155330 TTCTGAAACAAAAGCATCAATATTA
451 TTGAGAAACCAAAGCATCAATATCG
* * * * * ** *
155355 TGTATCTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
155420 TGTTCATGTTTTTCATATTTAAGTGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-
66 TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGC
* *
155484 TATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTC
130 T-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* * * *
155549 CTAGTCTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTT
194 CCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
*
155614 TGATTTATAGGAAAATAGGGCAAAGAAAGGATTTC
259 TGATTTA-AGGAAAATAGGGCAAAGAAAAGATTTC
155649 TGATGAAAAC
Statistics
Matches: 6482, Mismatches: 847, Indels: 231
0.86 0.11 0.03
Matches are distributed among these distances:
467 81 0.01
468 67 0.01
469 84 0.01
470 27 0.00
472 3 0.00
473 12 0.00
474 143 0.02
475 388 0.06
476 1087 0.17
477 2113 0.33
478 2170 0.33
479 302 0.05
480 5 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
TATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCC
AGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTG
ATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGAG
AAACCAAAGCATCAATATCG
Found at i:157321 original size:42 final size:42
Alignment explanation
Indices: 157260--157378 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
157250 TAGCCCTCAA
* * *
157260 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAGAGACAGG
* *
157302 AGAGATAGTAGAGATAGGAGGGATGAGAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAGAGACAGG
*
157344 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAG
157379 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAGAGACAGG
Found at i:157336 original size:33 final size:30
Alignment explanation
Indices: 157284--157350 Score: 80
Period size: 33 Copynumber: 2.1 Consensus size: 30
157274 GAGGAGGGAT
* *
157284 GATAGGAGGAGAGACAGGAGAGATAGTAGA
1 GATAGGAGGAGAGACAGGAGAGACAGGAGA
*
157314 GATAGGAGGGATGAGAGGAGGAGAGACAGGAGA
1 GATAGGA-GGA-GAGA-CAGGAGAGACAGGAGA
157347 GATA
1 GATA
157351 ATAGAGAGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 7 0.23
31 3 0.10
32 4 0.13
33 17 0.55
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (30 bp):
GATAGGAGGAGAGACAGGAGAGACAGGAGA
Found at i:163968 original size:477 final size:476
Alignment explanation
Indices: 162356--177993 Score: 21268
Period size: 477 Copynumber: 32.8 Consensus size: 476
162346 GTTGTCATCA
*
162356 ATTTCCATGCTAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
162420 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** * *
162485 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATACCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATA-TGATGTAT
* *
162549 CCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
162614 ATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
162679 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * *
162744 TGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
162809 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* * *
162832 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
162896 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
162961 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
163026 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
*
163091 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
163156 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTTGGCTTCCCAGT
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG--TTTTTGGCTTCCCAGT
* * *
163221 CCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATT
387 CCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATT
*
163286 TGAAGGAAAATAGGGCAAAGAAAAG
452 TAAAGGAAAATAGGGCAAAGAAAAG
* * * * *
163311 ATTCCCATGCAATAGAAAATCATCAAAATCATTTATCCTAAGGAGGAGAATGTGTTTACAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * ** ** *
163376 TAATCACAAATTGATTGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * *
163440 AGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTCAGAAACCAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
163505 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * *
163570 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-TATTT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGG-AAAGAAAAGCT-TTT
* * * * *
163634 CTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGT
322 CTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGT
* * * *
163699 CTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATT
387 CCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATT
* *
163764 TATAGGAAAATAGGGCAAAGAAAGG
452 TAAAGGAAAATAGGGCAAAGAAAAG
*
163789 ATTTCCATGCTAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
163853 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
163918 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* *
163982 CCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
164047 ATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
164112 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * *
164177 TGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
164242 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* * *
164265 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** * *
164329 CTTCTTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
164394 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
164459 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
**
164524 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
164589 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * *
164654 CTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
164719 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * *
164743 ATTCCCATGCAATAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTTCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * ** ** *
164808 TAATCACAAATTGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * * *
164872 AGACTTTAAAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAACAAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
164937 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * *
165002 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-TATTT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGG-AAAGAAAAGCT-TTT
** * * * *
165066 CTCACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGT
322 CTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGT
* * * *
165131 CTTGAAAAGAATGGAGACTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATT
387 CCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATT
* *
165196 TATAGGAAAATAGGGCAAAGAAAGG
452 TAAAGGAAAATAGGGCAAAGAAAAG
*
165221 ATTTCCATGCTAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
165285 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
165350 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* * *
165414 CCTACTGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
165479 ATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
165544 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * *
165609 TGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
165674 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* * *
165697 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
165761 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
165826 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
* * *
165891 CCTAATGAGGAA-ACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATT
194 CCTAATGA-GAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* *
165955 AATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
258 AATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
166020 TTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * * *
166085 CTGAAAAGAATGGAGATTGCTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* *
166150 AAAGGAAAGTTA-GGCGAAGAAAAG
453 AAAGGAAA-ATAGGGCAAAGAAAAG
** * *
166174 ATTTCCATATAAAA-AAAAT-ACTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
166237 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
166302 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
166367 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * **
166432 ATGTTTTTCATATTTAAGAGACAAACTTTGACTGTCTCAAAAATAGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
166497 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * *
166562 CTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
166627 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * * *
166651 ATTCCCATGCAATAGAAAATCATCAAAACCATTTATCCTAATGAGGAGAATGTGTTTACAGTTCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * ** ** *
166716 TAATCACAAATTGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * * *
166780 AGACTTTAAAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAACAAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
166845 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
166910 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAA-AAAGAG-TATTT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAA-AGCT-TTT
** * * * *
166973 CTCACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGT
322 CTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGT
* * *
167038 CTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATT
387 CCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATT
* *
167103 TATAGGAAAATAGGGCAAAGAAAGG
452 TAAAGGAAAATAGGGCAAAGAAAAG
*
167128 ATTTCCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
167192 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
167257 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* *
167321 CCTAATGAGAAGGCAATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * * *
167386 GTATTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
167451 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * * *
167516 TGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
167581 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* *
167604 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
167668 CTAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* *** *
167733 AGACTTTACTAAAATTCAAGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTA
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTA
* *
167797 TCCTAATGAGAAGGCAATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
193 TCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* * *
167862 AATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGATGGAAAGAAAAGCTTTTC
258 AATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* *
167927 TTGCGATACCAAAGCTTCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * *
167992 CTGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* *
168057 AAAGGAAAGTAAGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* *
168081 ATTTCCATGCAAAAGAAAAT-ACTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
168145 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
168210 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * * *
168275 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTCAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
**
168340 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * *
168405 TGCGACACCGAAGCTTCAATGTCTTTTATCCTAATGAAAGGATTGTATTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGT-GTTTTTGGCTTCCCAGTC
* * * *
168470 TTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
168535 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * *
168559 ATTCCCATGCAATAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTTCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * ** ** *
168624 TAATCACAAATTGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
168688 AGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAACCAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
168753 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * *
168818 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAG-TATTTC
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCT-TTTC
* * * * *
168882 TCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * *
168947 TTGAAAAGAATGGAGAGTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* * *
169012 ATAGGAAAATCGGGCAAAGAAAGG
453 AAAGGAAAATAGGGCAAAGAAAAG
* *
169036 ATTTCCATGCTAAA-AAAATCATCAATAACATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
169100 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
169165 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
*
169229 CCTAATGAGAAGGC-ATTGTTTATGGTACCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
194 CCTAATGAGAAGGCTA-TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* *
169293 AATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
258 AATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
169358 TTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * * * *
169423 CTGAAAAGAATGGAGATTGTTACAAGAATCAAGGCTTACTTTTTTTAAGATATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* *
169488 AAAGGAAAGTAAGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * *
169512 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
169576 CTACTCACAAAATGAATGAAGGTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
169641 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
169706 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
*
169771 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
169836 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * *
169901 CTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
169966 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * *
169990 ATTCCCATGCAATAGAAAATCATCAAAATCATTTATCCTAAGGAGGAGAATGTGTTTACAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * ** ** *
170055 TAATCACAAATTGATTGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
170119 AGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAACCAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
170184 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * *
170249 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAG-TATTTC
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCT-TTTC
* * * * *
170313 TCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * *
170378 TTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* *
170443 ATAGGAAAATAGGGCAAAGAAAGG
453 AAAGGAAAATAGGGCAAAGAAAAG
*
170467 ATTTCCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
170531 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
170596 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* *
170660 CCTAATGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAACAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
170725 ATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
170790 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * * * *
170855 TAAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
170920 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* * *
170943 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** * * *
171007 CTTCTTACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * *
171072 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCTTCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
171137 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
**
171202 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
171267 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * *
171332 CTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* * *
171397 GAAGGAAAGTAAGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * *
171421 ATTTCCATGCAAAAGAAAAT-ACTCAGTATCATTTATCCCAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
171485 CTACTCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
171550 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
171615 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
** * *
171680 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTAGAAAGAAAAGGTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
171745 TGCGACACCGAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * * *
171810 TTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
171875 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * *
171899 ATTCCCATGCAATAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTTCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * ** ** *
171964 TAATCACAAATTGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
172028 AGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAACCAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
172093 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * *
172158 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAG-TATTTC
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCT-TTTC
* * * * *
172222 TCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * *
172287 TTGAAAAGAATGGAGAGTATTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* * *
172352 ATAGGAAAATCGGGCAAAGAAAGG
453 AAAGGAAAATAGGGCAAAGAAAAG
* *
172376 ATTTCCATGCTAAA-AAAATCATCAATAACATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
172440 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
172505 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* *
172569 CCTAATGAGAAGGC-ATTGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATT
194 CCTAATGAGAAGGCTA-TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* *
172633 AATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
258 AATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * *
172698 TTGCGATACCAAAGCTTCAATGTCCTATATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * * *
172763 CTGAAAAGAATGGAGATTGTTACAAGAATCAAGGCTTGCTTTTTTTAAGATATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* *
172828 AAAGGAAAGTAAGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * *
172852 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
172916 CTACTCACAAAATGAATGAAGGTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
172981 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
173046 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
*
173111 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
173176 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * * *
173241 CTAAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
173306 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * *
173330 ATTCCCATGCAATAGAAAATCATCAAAATCATTTATCCTAAGGAGGAGAATGTGTTTACAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * ** ** *
173395 TAATCACAAATTGATTGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
173459 AGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAACCAAAGCATCAATATTATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
173524 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * * *
173589 ATGTGTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-TATTT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGG-AAAGAAAAGCT-TTT
* * * * *
173653 CTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGT
322 CTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGT
* * *
173718 CTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATT
387 CCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATT
* *
173783 TATAGGAAAATAGGGCAAAGAAAGG
452 TAAAGGAAAATAGGGCAAAGAAAAG
*
173808 ATTTCCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
173872 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
173937 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* * *
174001 CCTAATGAGAAGGCAATGTTTATGGTGCCTAATCCTAAAAACAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
174066 ATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
174131 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * * *
174196 TGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
174261 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* * *
174284 ATTTCCATGCAAAAGAAAAT-ACTGAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** * * *
174348 CTTCTTACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * *
174413 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCTTCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
174478 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
**
174543 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
174608 TGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGAAAGGATTGTGTTTTTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCCAGTC
* * *
174673 CTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
174738 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * * * *
174762 ATTCCCATGCAATAGAACATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTTCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * ** ** *
174827 TAATCACAAATTGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGAGATACAAACAT
66 TAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * * * *
174891 AGACTTTAAAAAAATTGGTGGG-AAAATACCTTTCTTCTGAAACAAAAGCATCAATATTATATAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATGTAT
* * * * ** * * *
174955 CTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTGTTC
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* *
175020 ATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAA-AAAGAG-TATTT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAA-AGCT-TTT
** * * * *
175083 CTCACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCTAGT
322 CTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGT
* * *
175148 CTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTGATT
387 CCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATT
* *
175213 TATAGGAAAATAGGGCAAAGAAAGG
452 TAAAGGAAAATAGGGCAAAGAAAAG
* *
175238 ATTTCCATGCCAAA-AAAATCATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
175302 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
175367 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
* *
175431 CCTAATGAGAAGGCAATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * *
175496 ATATTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
175561 TGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTCC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCC
* * * * *
175626 TGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTTA
389 TGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTA
* *
175691 AAGGAAAGTAAGGCAAAGAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* *
175714 ATTTCCATGCAAAAGAAAAT-ACTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
175778 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
175843 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
* * *
175908 CCTAATGAGGAA-ACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATT
194 CCTAATGA-GAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* *
175972 AATGTTTGTCGTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
258 AATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
176037 TTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGAAAAGAATGTGTTTTTGGCTTCCCAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * * *
176102 CTGAAAAGAATGGAGATTGCTACAAGAATCAATGCTTGCTTTTTTTAAGATATGAACTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
* *
176167 AAAGGAAAGTAAGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
** * *
176191 ATTTCCATTTAAAA-AAAAT-ACTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGC
1 ATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
176254 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * *
176319 AGACTTTACAAAAATTGGGGGGAAAAATGCATGTCCTACATAACCAAAGCATCAATATGATGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGA-AACCAAAGCATCAATATGATGTAT
** * *
176384 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
*
176449 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCT
259 ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
176514 TGCGACACCAAAGCTTCAATGTCCTGTATCCTAATGAAAGGATTGTGTTTCTTGGCTTCCCAGTC
324 TGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TTGGCTTCCCAGTC
* * *
176579 CTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
176644 GAAGGAAAATAGGGCAAAGAAAAG
453 AAAGGAAAATAGGGCAAAGAAAAG
* * * *
176668 A-TTCACATGCAATAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAATGC
1 ATTTC-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
176732 CTAATCACAAATTGAATGAAGATCATT-CTTAGCATCCACGTTTGTTTCATTTGA-G-ATCCAAA
65 CTAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCAT--GAA
* * * * * *
176794 CATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTCTGAAATCAAAGCATCAATATTATG
127 CTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATATGATG
** * * * ** * *
176859 TATTTTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTAAAAAGGATGGGCATCGGTGTGAGTG
191 TATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
* * * *
176924 TTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAAAAAAAG-TA
256 TTAATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGG-AAAGAAAAGCT-
* * * * *
176988 TTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCCT
319 TTTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCC
* * *
177053 AGTCTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTGGCCTTATTTAAGGTATGAACTTTG
384 AGTCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTG
* *
177118 ATTTATAGGAAAATAGGGCAAAGAAAGG
449 ATTTAAAGGAAAATAGGGCAAAGAAAAG
* *
177146 ATTTCCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGTGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
177210 TAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* ** *
177275 GACTTTACTAAAATTCATGGGAAAAATGCCTATCTTGAGAAACCAAAGCATCAATATCG-TGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTT-AGAAACCAAAGCATCAATAT-GATGTAT
*
177339 CCTAATGAGAAGGCAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA
* * * * *
177404 ATGTTTGTCAT-TTGTAAAAGACAAACTTTGACTCTCTC-AAATCGATGGAAAGAAAAGCTTTTC
259 ATGTTTTTCATATT-TAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
** * * * *
177467 TTGCGACACCAAAGCAGCAATGTGATGTATCCTAATGAAGGGAATGTGGTTTTGGCTTCCTAGTC
323 TTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTC
* * * * * * * * **
177532 TTGAAAAGAATGGAGTCTGTTGCAAGAATCAACGCTTGGCTTATTTATGGCATGAACTTTGACGT
388 CTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTT
*
177597 AAAGGAAAATAGGGCAAAGAAAGG
453 AAAGGAAAATAGGGCAAAGAAAAG
* *
177621 ATTTGCATGCAAAAGAAAATCATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCC
1 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
177686 TAATCACAAAATGAATGAAGATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
* * *
177751 GACTTTACAAAAATTGGCGGGAAAAATGCCTTTCTT-GCAAACCCAAAGCATCAATATGATGTGT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAG-AAA-CCAAAGCATCAATATGATGTAT
* * ** *
177815 CCTAATGAGAAGACGATGTTTATGGTGTGTAA-CCTGAAAATAACT-GGGATTAGTATGAGTA-T
194 CCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGGATTAGTATGAGTATT
* * * * * *
177877 ACATGTTTATCGTATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGAAAAGAAAAACTTTT
258 A-ATGTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * *
177942 CTTGCGACACCAAAGCATCAATATCATTTATCTTAAT-AAGGAGAATGTGTTT
322 CTTGCGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAG-GAATGTGTTT
177994 ACGTGCCTAA
Statistics
Matches: 13408, Mismatches: 1608, Indels: 292
0.88 0.11 0.02
Matches are distributed among these distances:
474 3 0.00
475 348 0.03
476 3499 0.26
477 5377 0.40
478 3581 0.27
479 542 0.04
480 58 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
GACTTTACAAAAATTGGTGGGAAAAATGCCTGTCTTAGAAACCAAAGCATCAATATGATGTATCC
TAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTAAT
GTTTTTCATATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
CGACACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCCTG
AAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAA
GGAAAATAGGGCAAAGAAAAG
Found at i:167487 original size:159 final size:159
Alignment explanation
Indices: 162517--185938 Score: 3521
Period size: 158 Copynumber: 147.5 Consensus size: 159
162507 AAAATGCCTA
* * * *
162517 TCTTGAGAAACCAAAGCATCAATACCGTGTATCCTACTGAGAAGGCAA-TGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
*
162581 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
162646 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
162676 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* * ** * * * * * * **
162740 GTCCTGAAAAGAATGGAGACT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
162803 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
162836 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** *
162899 CTCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
162958 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
162994 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
163056 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
**
163121 ACTCTATCAAAAATGGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
163153 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTTGGCTTCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG--TTTATGG-TGCC
* * * * ** * ** * * ** *
163217 CAGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTT
62 TAATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTT
* *** * * *
163281 TGA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
126 TGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * **
163315 CCATGC-AATAGAAAATCATCAAAATCATTTATCCTAAGGAGGA-GAATGTGTTTACAGTGCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * * ** * * * * *
163378 ATCAC--AAATTGATTGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * ** * *
163440 AGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
163473 TCTT-CAGAAACCAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
163536 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
163600 ATTCTATCAACAACGGTGGAAAAAAAAAG-TATT
128 ACTCTATCAAAAACAGTGG-AAAGAAAAGCT-TT
* * * * *
163633 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
163696 AGTCTTGAAAAGAATGGAGACTA-T-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
163758 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * *
163793 CCATGCTAAA-AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
163856 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
163914 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* * *
163950 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTACTGAGAAGGCAA-TGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
*
164014 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
164079 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
164109 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* * ** * * * * * * **
164173 GTCCTGAAAAGAATGGAGACT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
164236 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
164269 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCT-
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * ** *
164331 -TCTTACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATCCT-GAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
164391 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
164427 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
164489 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
*
164554 ACTCTATCAAAAATAGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
164586 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * ** * ** * * ** *
164650 AGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
164714 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * ** *
164747 CCATGC-AATAGAAAATCATCAAAATCATTTATCCTAATGAGGA-GAATGTGTTTACAGTTCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * ** * * * * *
164810 ATCAC--AAATTGAATGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * * ** * *
164872 AGACTTTA-AAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * * *
164905 TCTT-CTGAAACAAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
164968 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
165032 ATTCTATCAACAACGGTGGAAAAAAAAAG-TATT
128 ACTCTATCAAAAACAGTGG-AAAGAAAAGCT-TT
** * * * *
165065 TCTCACGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
165128 AGTCTTGAAAAGAATGGAGACTA-T-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
165190 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * *
165225 CCATGCTAAA-AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
165288 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
165346 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* * *
165382 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTACTGAGAAGGCAA-TGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* *
165446 TCCTGAAAAGAATGGGGATTAGTTTGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
165511 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
165541 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* * ** * * * * * * **
165605 GTCCTGAAAAGAATGGAGACT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
165668 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
165701 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** *
165764 CTCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
165823 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * ***
165859 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGGAAACTA-TGTTTATGGTGCCTA
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGA-GAAGGAAGTGTTTATGGTGCCTA
* * *
165922 ATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
64 ATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
*
165987 CTCTATCAAAAACGGTGGAAAGAAAAGCTTT
129 CTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
166018 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * **
166082 GTCCTGAAAAGAATGGAGATT-GCTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
* *
166145 GA-T-T-T-AAAGGAA-AGTTAGGCGAAGAAAAGATTT
127 GACTCTATCAAA--AACAG-T-GG-AAAGAAAAGCTTT
* * ** * ** * * * * *
166178 CCAT-ATAAA-AAAAATACTCAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** *
166240 CTCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
166299 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
166335 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
166397 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * *
166462 ACTGTCTCAAAAATAGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
166494 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * ** * ** * * ** *
166558 AGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
166622 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * ** *
166655 CCATGC-AATAGAAAATCATCAAAACCATTTATCCTAATGAGGA-GAATGTGTTTACAGTTCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * ** * * * * *
166718 ATCAC--AAATTGAATGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * * ** * *
166780 AGACTTTA-AAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * * *
166813 TCTT-CTGAAACAAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
166876 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * *
166940 ATTCTATCAACAACGGTGGAAA-AAAGAG-TATT
128 ACTCTATCAAAAACAGTGGAAAGAAA-AGCT-TT
** * * * *
166972 TCTCACGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
167035 AGTCTTGAAAAGAATGGAGACT-GT-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
167097 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * *
167132 CCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
167195 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
167253 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* * *
167289 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCAA-TGATTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* * *
167353 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAGTATTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
167418 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
167448 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * **
167512 GTCCTGAAAAGAATGGAGATT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
167575 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * *
167608 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * *
167671 ATCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--A
* * * * * *
167729 ACTTAGACTTTA-CTAAAATTCAAG-GG-AA-AAATGCCTA
122 ACTTTGACTCTATC-AAAA-AC-AGTGGAAAGAAAAGCTTT
* * *
167766 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCAA-TGTTTATGCTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
*
167830 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
167895 TCTATCAAAAAC-GATGGAAAGAAAAGCTTT
130 TCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * * * * * *
167925 TCTTGCGATACCAAAGCTTCAATGTCATGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * **
167989 GTCCTGAAAAGAATGGAGATT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
168052 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * *
168085 CCATGC-AAAAGAAAATACTCAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * **
168148 CTCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGACAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
168207 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
168243 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * * *
168305 AATCTTCAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
*
168370 ACTCTATCAAAAATAGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * * * * *
168402 TCTTGCGACACCGAAGCTTCAATGTCTTTTATCCTAATGA-AAGGATTGTATTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGT-GTTTATGG-TGCCT
* * * * ** * ** * * ** *
168466 AGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
168530 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * ** *
168563 CCATGC-AATAGAAAATCATCAAAATCATTTATCCTAATGAGGA-GAATGTGTTTACAGTTCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * ** * * * * *
168626 ATCAC--AAATTGAATGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * ** * *
168688 AGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
168721 TCTT-CTGAAACCAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
168784 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
168848 ATTCTATCAACAACGGTGGAAAAAAAAG-TATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCT-TT
* * * * *
168880 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
168943 AGTCTTGAAAAGAATGGAGAGTA-T-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * *
169005 TTGA-TTTAT-AGGAAAATC-G-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAA-CAGTGG-AAAGAAAAGCTTT
* * * * * * * * *
169040 CCATGCTAAA-AAAATCATCAATAACATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
169103 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
169161 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* * * * *
169197 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCATTGTTTATGGTACCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAGTGTTTATGGTGCCTAAT
*
169262 CCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACT
66 CCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACT
*
169327 CTATCAAAAACGGTGGAAAGAAAAGCTTT
131 CTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
169356 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * * * **
169420 GTCCTGAAAAGAATGGAGATT-GTTACAAGAATCAAGGCTT-ACTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
169483 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
169516 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * ** *
169579 CTCAC--AAAATGAATGAAGGTCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
169638 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
169674 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
169736 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
**
169801 ACTCTATCAAAAATGGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
169833 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * ** * ** * * ** *
169897 AGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
169961 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * **
169994 CCATGC-AATAGAAAATCATCAAAATCATTTATCCTAAGGAGGA-GAATGTGTTTACAGTGCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * * ** * * * * *
170057 ATCAC--AAATTGATTGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * ** * *
170119 AGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
170152 TCTT-CTGAAACCAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
170215 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
170279 ATTCTATCAACAACGGTGGAAAAAAAAG-TATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCT-TT
* * * * *
170311 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
170374 AGTCTTGAAAAGAATGGAGACT-GT-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
170436 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * *
170471 CCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
170534 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
170592 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* *
170628 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCAA-TGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* *
170692 TCCTGAAAACAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
170757 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
170787 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* * ** * * * * * * **
170851 GTCCTAAAAAGAATGGAGATT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
170914 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
170947 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCT-
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * *
171009 -TCTTACAAAATGAATGAAGATCATTACT-AGAATCT-ATGTTTGTC-TCATTT--GAGGCAAGA
64 ATCCT-GAAAA-GAATGGAGATTAGTA-TGAGTAT-TAATGTTTGTCGT-ATTTAAGAGAC-A-A
* * ** * * * * *
171068 ACTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
122 ACTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * * *
171105 TCCTAC-ATAACCAAAGCTTCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
171167 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
*
171232 ACTCTATCAAAAATAGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
171264 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * ** * ** * * ** *
171328 AGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* * *
171392 GA-T-T-TGAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAA-AAACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
171425 CCATGC-AAAAGAAAATACTCAGTATCATTTATCCCAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * **
171488 CTCAC--AAAATAAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGACAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
171547 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
171583 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
171645 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * *
171710 ACTCTATCAAAAATAGTAGAAAGAAAAGGTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * * *
171742 TCTTGCGACACCGAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * * ** * ** * * ** *
171806 AGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
171870 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * ** *
171903 CCATGC-AATAGAAAATCATCAAAATCATTTATCCTAATGAGGA-GAATGTGTTTACAGTTCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * ** * * * * *
171966 ATCAC--AAATTGAATGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * ** * *
172028 AGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
172061 TCTT-CTGAAACCAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
172124 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
172188 ATTCTATCAACAACGGTGGAAAAAAAAG-TATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCT-TT
* * * * *
172220 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
172283 AGTCTTGAAAAGAATGGAGAGTA-T-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * *
172345 TTGA-TTTAT-AGGAAAATC-G-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAA-CAGTGG-AAAGAAAAGCTTT
* * * * * * * * *
172380 CCATGCTAAA-AAAATCATCAATAACATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
172443 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
172501 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* * * *
172537 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCATTGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAGTGTTTATGGTGCCTAAT
*
172602 CTTGAAAAGAATAGG-GATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
66 CCTGAAAAGAAT-GGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
172666 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * * *
172696 TCTTGCGATACCAAAGCTTCAATGTCCTATATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * * **
172760 GTCCTGAAAAGAATGGAGATT-GTTACAAGAATCAAGGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
172823 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
172856 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * ** *
172919 CTCAC--AAAATGAATGAAGGTCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
172978 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
173014 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
173076 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
**
173141 ACTCTATCAAAAATGGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
173173 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * * ** * ** * * ** *
173237 AGTCCTAAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
173301 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * **
173334 CCATGC-AATAGAAAATCATCAAAATCATTTATCCTAAGGAGGA-GAATGTGTTTACAGTGCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * * ** * * * * *
173397 ATCAC--AAATTGATTGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * ** * *
173459 AGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
173492 TCTT-CTGAAACCAAAGCATCAATATTATGTATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * *
173555 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTGTT-TCATATTTAAGAGACAAACTTT
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGT-TTGTCGTATTTAAGAGACAAACTTT
* * * *
173618 GATTCTATCAACAACGGTGGAAAAAAAAAG-TATT
127 GACTCTATCAAAAACAGTGG-AAAGAAAAGCT-TT
* * * * *
173652 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
173715 AGTCTTGAAAAGAATGGAGACT-GT-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
173777 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * *
173812 CCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
173875 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
173933 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* *
173969 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCAA-TGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* * *
174033 TCCTAAAAACAATGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
174098 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
174128 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * **
174192 GTCCTGAAAAGAATGGAGATT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
174255 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * * *
174288 CCATGC-AAAAGAAAATACTGAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCT-
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * *
174350 -TCTTACAAAATGAATGAAGATCATTACT-AGAATCT-ATGTTTGTC-TCATTT--GAGGCAAGA
64 ATCCT-GAAAA-GAATGGAGATTAGTA-TGAGTAT-TAATGTTTGTCGT-ATTTAAGAGAC-A-A
* * ** * * * * *
174409 ACTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
122 ACTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * * *
174446 TCCTAC-ATAACCAAAGCTTCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
174508 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
*
174573 ACTCTATCAAAAATAGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
174605 TCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA-AAGGATTGTGTTTTTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * ** * ** * * ** *
174669 AGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
174733 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * ** *
174766 CCATGC-AATA-GAACATCATCAAAATCATTTATCCTAATGAGGA-GAATGTGTTTACAGTTCCT
1 TCTTGCGAA-ACCAA-AGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCT
* * * * * * * ** * * * * *
174828 AATCAC--AAATTGAATGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATACAAACA
63 AATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACT
* * * *** * *
174890 TAGACT-T-T-AAAAAAATTGGTGGGAAAATACCTT
125 TTGACTCTATCAAAAACAGTGGAAAGAAAA-GCTTT
* * * * *
174923 TCTT-CTGAAACAAAAGCATCAATATTATATATCTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
174986 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * *
175050 ATTCTATCAACAACGGTGGAAA-AAAGAG-TATT
128 ACTCTATCAAAAACAGTGGAAAGAAA-AGCT-TT
** * * * *
175082 TCTCACGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
175145 AGTCTTGAAAAGAATGGAGACT-GT-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
175207 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * * *
175242 CCATGCCAAA-AAAATCATCAATATCATTTATCCCAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
175305 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
175363 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* * *
175399 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCAA-TGATTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* *
175463 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAATATTTGTCGTATTTAAGAGACAAACTTTGAC
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGAC
*
175528 TCTATCAAAAACGGTGGAAAGAAAAGCTTT
130 TCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
175558 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * **
175622 GTCCTGAAAAGAATGGAGATT-GTTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
175685 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * ** ** * * * * *
175718 CCATGC-AAAAGAAAATACTCAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCTA
1 TCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** *
175781 CTCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGAA
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-AA
* * ** * * * * *
175840 CTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * ***
175876 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGGAAACTA-TGTTTATGGTGCCTA
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGA-GAAGGAAGTGTTTATGGTGCCTA
* * *
175939 ATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
64 ATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
*
176004 CTCTATCAAAAACGGTGGAAAGAAAAGCTTT
129 CTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
176035 TCTTGCGATACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAAGAATGTGTTTTTGGCTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * * * * * **
176099 GTCCTGAAAAGAATGGAGATT-GCTACAAGAATCAATGCTTG-CTTTTTTTAAGATATGAACTTT
64 ATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTC-GTATTTAAGAGACAAACTTT
*
176162 GA-T-T-T-AAAGGAA-AGTAAGGCAAAGAAAAGATTT
127 GACTCTATCAAA--AACAGT--GG-AAAGAAAAGCTTT
* * * ** * * * * *
176195 CCATT--TAAA-AAAAATACTCAGTATCATTTATCCTAATGAGGA-GAATGTGTTTGTAGTGCCT
1 TC-TTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCT
* * * * * ** *
176256 ACTCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCAAGA
63 AATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGAC-A-A
* * ** * * * * *
176315 ACTTAGACTTTA-CAAAAATTGGGGGGAA-AAATGCATG
122 ACTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * *
176352 TCCTAC-ATAACCAAAGCATCAATATGATGTATCCTAATGAGAA--AACTATGTTTATGGTGCCT
1 TCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA--GTGTTTATGGTGCCT
* * * * *
176414 AATCTTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTTTCATATTTAAGAGACAAACTTTG
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
**
176479 ACTCTATCAAAAATGGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
176511 TCTTGCGACACCAAAGCTTCAATGTCCTGTATCCTAATGA-AAGGATTGTGTTTCTTGGCTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTGTTT-ATGG-TGCCT
* * * ** * ** * * ** *
176575 AGTCCTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * *
176639 GA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * ***
176672 ACATGC-AATAGAAAATCATCAAAATCATTTATCCTAATGAGGA-GAATGTGTTTACAATGCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * * * ** * * * ** *
176735 ATCAC--AAATTGAATGAAGATCATTCTTAGCATCCACGTTTGT-TTCATTTGAGATCCAAACAT
64 ATC-CTGAAA-AGAATGGAGATTAGTATGAGTATTAATGTTTGTCGT-ATTTAAGAGACAAACTT
* * ** * *
176797 AGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
126 TGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * ** *
176830 TCTT-CTGAAATCAAAGCATCAATATTATGTATTTTAATGAGAAGGCTA-TGTTTATGGTGCCTA
1 TCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTA
* * ** * * * * *
176893 ATCCTAAAAAGGATGG-GCATCGGTGTGAGTGTTCATGTTTTTCATATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
176957 ATTCTATCAACAACGGTGGAAAAAAAAAG-TATT
128 ACTCTATCAAAAACAGTGG-AAAGAAAAGCT-TT
* * * * *
176990 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTG-TTTATGG-TGCCT
* * * * ** * * * * **
177053 AGTCTTGAAAAGAATGGAGACT-GT-TGCAAGAATCGATGCTGGCCTTATTTAAG-GTATGAACT
63 AATCCTGAAAAGAATGGAGATTAGTATG--AGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * * *
177115 TTGA-TTTAT-AGGAAAATAG-GGCAAAGAAAGGATTT
125 TTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * * * * * * *
177150 CCATGCCAAA-AAAATCATCAATATCATTTATCCTAATGTGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
177213 TCAC--AAAATGAAAGAAGATCATTACT-AG-ATTCCATGTTTGTC-TCATTTAAG-G-CATGAA
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAGACA--AA
* * * * * * *
177271 CTTAGACTTTA-CTAAAATTCA-TGGGAA-AAATGCCTA
123 CTTTGACTCTATC-AAAA-ACAGTGGAAAGAAAAGCTTT
* *
177307 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGGCAA-TGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* * *
177371 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCAT-TTGTAAAAGACAAACTTTGA
65 TCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATT-TAAGAGACAAACTTTGA
* *
177435 CTCTCTC-AAATC-GATGGAAAGAAAAGCTTT
129 CTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * * * * *
177465 TCTTGCGACACCAAAGCAGCAATGTGATGTATCCTAATGA-AGGGAATGTGGTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GT-GTTTATGG-TGCCT
* * * * * * * * *
177528 AGTCTTGAAAAGAATGGAG-TCT-GT-TGCAAGAATCAACGCTTGGCTTATTTATG-G-CATGAA
63 AATCCTGAAAAGAATGGAGAT-TAGTATG--AGTATTAATGTTTGTCGTATTTAAGAGACA--AA
* * * * *
177588 CTTTGAC-GTA-AAGGAAAATAG-GGCAAAGAAAGGATTT
123 CTTTGACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * ** * * * * *
177625 GCATGCAAAAGAAAATCATCAATATCATTTATCCCAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
177689 TCAC--AAAATGAATGAAGA-TCGTTACT-AGAATCCAA-GTTTGTC-TCATTT--GAGGCATGA
65 TC-CTGAAAA-GAATGGAGATTAG-TA-TGAGTAT-TAATGTTTGTCGT-ATTTAAGAGACA--A
* * ** * * * *
177746 ACTTAGACTTTA-CAAAAATTGGCGGGAA-AAATGCCTT
122 ACTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * **
177783 TCTTGC-AAACCCAAAGCATCAATATGATGTGTCCTAATGAGAA-GACGATGTTTATGGTGTGTA
1 TCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAG-TGTTTATGGTGCCTA
* *
177846 A-CCTGAAAATAACTGG-GATTAGTATGAGTA-TACATGTTTATCGTATTTAAGAGACAAACTTT
64 ATCCTGAAAAGAA-TGGAGATTAGTATGAGTATTA-ATGTTTGTCGTATTTAAGAGACAAACTTT
* * * * *
177908 AATTCTATCAAAAACGGTGAAAAGAAAAACTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * *
177941 TCTTGCGACACCAAAGCATCAATATCATTTATCTTAATAAGGA-GAATGTGTTTA-CGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * ** * * *
178004 TCAC--AAAATGAATGAAGATCATTTCTG-GAATCCATATTTGTC-TCATTTGAG-GCACGAACT
65 TC-CTGAAAA-GAATGGAGATTA-GTATGAGTATTAATGTTTGTCGT-ATTTAAGAG-ACAAACT
* * ***** *
178064 TAGACTTTA-CGAATTTTGGTGG---GAAAA--TTG
125 TTGACTCTATC-AAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * * *
178094 CCTTACGAAACTAAAGCATCAATATCGTGTATCCTAATTA-AA--ACA----CTACGTTACCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTGTTTATGGTGCCTAA
* * * *
178152 TCCTAAAAAG-GTCGAGGATTAGTATGAGTATTCAA-GTTTGTCATATTTAAGAGACAAACTTTG
65 TCCTGAAAAGAATGGA-GATTAGTATGAGTATT-AATGTTTGTCGTATTTAAGAGACAAACTTTG
* * ** *
178215 ATTCTATGAAAAATGGTGAAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* ** * * *
178247 TCTTGTGACCCCAAAGCATCAATGTCATG-ATTCCTAA--AGAAGGGAATGTGTTTTTGGCTTCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTA-TCCTAATGAGAA-GGAA-GTGTTTATGG-TGCC
* * * * * * * ** * * **
178309 CAGTCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAG-GTATGAACTT
62 TAATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTT
* *** * * *
178373 TGA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
126 TGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
** * ** * * * * ** *
178407 TCGAGCAAAAGAAAATCATAAATATCATTTATCCTAA--CGAAGAGAATGTGTTTACAGTGTCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-GAA-GTGTTTATGGTGCCTA
* * * * ** * * *
178470 ATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGT-TTCATTTGAAG-CACGAAC
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTT-AAGAGACAAAC
* * * ** *
178530 ATAGACTTTA-CAAAAATTGGTGGGAAA-AATA-CTTT
124 TTTGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * * * * *
178565 TCTTGCAAAACCAAAGCATCAATATCGTGTATCTTAAAGATAA-GACTA-TGTTTATGGTGCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * ** * * * * *
178628 ATCCTGAAAAGGATGG-GCATCAGGGTCAGTATTCATGTTTTTCATATTGAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * *
178692 ATTCTATTAAAAACGGTGGGAAA-AAAAGCATT
128 ACTCTATCAAAAACAGT-GGAAAGAAAAGCTTT
* * * * * *
178724 TCTCGCGACACCAAAGCATCAATGTCATGTATCCTAAT--GAAGCGAATGTGTTTTTGGCTTCGT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-GAA-GTGTTTATGG-TGCCT
* * * * ** * ** * * * ** **
178787 AGTCTTGAAAAGAATAGAGACT-GTTACAAGAATCGATGCTTGCCTTATTTAAGCTATGAACTTT
63 AATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTT
* * * * *
178851 GA-TTTA-AAGGAAAATAG-GGCAAAGAAAGGATTT
127 GACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* * * ** * * * **
178884 CCATGCAAAAAAAAAAATCATCAATATCATTTATCCTAATGAGTA-GAATGTGTTTACAGTGCCT
1 TCTTGC--GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCT
* * * * ** *
178948 AAT-C---AATGAAT-GAGGATCATTACT-AGAATCCATGTTTATC-TCATTTAAG-G-CATGAA
63 AATCCTGAAAAGAATGGA-GATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGACA--AA
* * ** *
179004 CTTAGACTTTA-CTAAAATTAGTGG---GAAAATGCCTT
123 CTTTGACTCTATC-AAAAACAGTGGAAAGAAAA-GCTTT
* * * * * * *
179039 TCTTGCGTAACCAAAGTATCAATATGATGTATCCTAACGACAAGGCTA-TGTTTATGGTGTCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGG-AAGTGTTTATGGTGCCTAA
* * *
179103 TCCTGAAAA-AACAGG-GATTAGTATGAGTATGCATTACATGTTTGTTGTATTTAAAAGACAAAC
65 TCCTGAAAAGAA-TGGAGATTAGTATGAG--T--ATTA-ATGTTTGTCGTATTTAAGAGACAAAC
* * ** *
179166 TTTGATTCTGTCAAAAATGGTGAAAAGAAAAGCTTT
124 TTTGACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * *
179202 TCTTGCGATACCAAAGCATCAATGTCATTTATCCCAATTGAG--GGAAAGTGTTT-TGGGCTTCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA-TGAGAAGG-AAGTGTTTAT-GG-TGCC
* * * * * * * * **
179264 CAATCTTG-AAAGAAAGGAGACT-GTTATGAGAATCAATGCTTGTCTTATTTAAG-GTATGAACT
62 TAATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* * *** * *
179326 TCGA-TTTGAAGGAAAACAG-GGCAAAGAAAAGATTC
125 TTGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * * ** * * * **
179361 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTACAGTG-CTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * * * *
179424 TCAC--AAATTGAATGAAAATCATTACT-AG-ATTCTATGTTTGTC-TCATTTGAG-GCACGAAC
65 TC-CTGAAA-AGAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAG-ACAAAC
** * **** * * *
179483 TTAAACTTTA-CGAAATTTGGTGGGAA-AAATGCCTT
124 TTTGACTCTATC-AAAAACAGTGGAAAGAAAAGCTTT
* * * ** * * * **
179518 TCTTGCGAAACTAAAGGATGAATATCGCGTATCATAATTA-AAAGACTA-TGTTTATGCAGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
** *
179581 ATCCTGAAAAGGGT-GAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTG
64 ATCCTGAAAAGAATGGA-GATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* *
179645 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
179677 TCTTG-TAACCCCAAAGCATCAATGTCATGTTTCCTAATGA-AGGGAATGTGTTTTTGGCTTCCC
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCT
* * * * * ** * * * * ** *
179740 AGTCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATATAAG-GTATGAACTTA
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* *** * * **
179804 GAAT-TGAAGGAAAATAG-GGCAAAGAAAAGATCC
127 GACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * * ** * * * * * *
179837 CCATGCAAAAGAAAATCATGAATATTATTTATCCTAATGAGGA-GAATGTGTTTATTGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * * *
179901 TCAC--AAAATGAATGAAGATCATTACT-AG-ATTCCATGTTTGT-TTCATTT-GGGGCACAAAC
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAG-ACAAAC
*** * ** * *
179960 AAAGACTTTA-CAAAAATTGGTCGGAAA-AATTA-CCTT
124 TTTGACTCTATCAAAAA-CAGT-GGAAAGAA-AAGCTTT
* ** ** * **
179996 TCTTGCGAAACCAAAGCATCAATGTTGTGTATTATAATGATAA-GACTA-TGTTTACAGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * * * * *
180059 ATCCTGAAAAGGATGG-GCATCAGTGTGAGTATTATTCATGTTTTTCATATTTAAGAGGCAAACT
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTA---ATGTTTGTCGTATTTAAGAGACAAACT
* * * * *
180123 TTGATTCTATAAAAAACGGTGAAAAGAAAAGCATT
125 TTGACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
180158 TCTCGTGACACCAAAGCTTCAATGTC----CTCCTAA-G-GAAGGGAATGTGCTTT-TGGCTTCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GGAA-GTG-TTTATGG-TGCC
* * * * * ** * ** * *
180216 TAGTCTTGAAAAGAATAGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG-GA-ATGAACT
62 TAATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACA--AACT
* ** * * *
180279 TTGA-TTTGAAGAAAAATAG-GGTAAAGAAAAGATTC
125 TTGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * * ** * * ** *
180314 CCATGCAAAAGAAAATG-ATCAATATCATCTATCCTAATGAGGA-GAATGTGTTTACAGTGCTTA
1 TCTTGCGAAACCAAA-GCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** * * *
180377 ATCAC--AAAATGGATGAAGATCATTACT-AGAATCCATGTTTGT-TTCATTTGAG-GCACGAAC
64 ATC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAG-ACAAAC
* * * ** * *
180437 ATAGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
124 TTTGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* *
180472 TCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * * * * ** * * *
180535 ATCTTAAAAAGGATGG-GCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAGAGACAAACTTTA
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * * *
180599 ATTCTATAAAAAACGGTCGAAAGAAAAGCATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
180631 TCTCGCGACACCAAAGCATCAATGTCAAGTATCCTAATGA-AGGGATTGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * * * * ** * * * **
180694 ACTCTTGAAAAGAATGGAGACTATTATAAGAATCGATGCTTGCCTTATTTAAG-GTATGAACTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* * * * *
180758 GA-TTTA-AAGGAAAATAG-GGCAAAGAAATGATTT
127 GACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
** * ** * * * * *
180791 TCAAG-TAAAAAAATATCATCAATATCATTTATCCTGATGAGGA-GAATGTGTTTATAGTGCCTA
1 TCTTGCGAAACCAA-AGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * **
180854 ATCC-CAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTAAG-G-CATGAAC
64 ATCCTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGACA--AAC
* * * ** * *
180914 TTAGACTTTA-CTAAAATTGATGGAAA-AAATGCCTT
124 TTTGACTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
*
180949 TCTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* *
181012 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTTTTTAAGAGACAAACTTTGA
64 ATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
* * *
181077 TTCTATC-AAATC-GATGGAAATAAAAGCTTT
129 CTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * * * * * * *
181107 TATTGCGACACCAAAGCAGCAATGTGATGTATCCTAATGA-AGGGAATGTGTTTTTGGCTTCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * *** * * * *
181171 GTGTTGAAAAGATTGGAG-TCT-GT-TGCAAGAACCGATGCTTGGC-TTTTTATG-G-CATGAAC
64 ATCCTGAAAAGAATGGAGAT-TAGTATG--AGTATTAATGTTTGTCGTATTTAAGAGACA--AAC
* * * *
181230 TTTGAC-GTA--AAGGAA-AGTAGGGCAAAGAAAGGATTT
124 TTTGACTCTATCAA-AAACAGT--GG-AAAGAAAAGCTTT
* * * ** * * * * *
181266 GCATGCAAAATAAAATCATCAATATCATTTATCCCAATGAGAA-GAATGTGTTTATAGTGTCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * *
181330 TCC-CAAAATGAATGAAGA-TCGTTACT-AGAATCGAA-GTTTGTC-TCATTT--GAGGCATGAA
65 TCCTGAAAA-GAATGGAGATTAG-TA-TGAGTAT-TAATGTTTGTCGT-ATTTAAGAGACA--AA
* * ** * * * *
181388 CTTAGACTTTA-CAAAAATTGGCGGGAA-AAATGCCTT
123 CTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * * *
181424 TCTTGC-AAGCCCAAAGCATCAATATGATGTGTCCTAATGAGAA-GACGATGTTTACGGTGCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAG-TGTTTATGGTGCCTA
* * *
181487 ATCTTGAAAATAACTGG-GATTAGTATGAGTA-TACATGTTTATCGTATTTAAGAGACAAACTTT
64 ATCCTGAAAAGAA-TGGAGATTAGTATGAGTATTA-ATGTTTGTCGTATTTAAGAGACAAACTTT
* * * *
181550 GATTCTATCAAAAACGGTGAAAAGAAAAACTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * **
181583 TCTTGCGACACCAAAGCATCAATATCATTTAT-CTGAATAAGGA-GAATGTGTTTACAGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** * * *
181646 ATCAC--AAAATGAATGAAGATCATTTCTG-GAATCCATATTTGTC-TCATTTGAG-GCACGAAC
64 ATC-CTGAAAA-GAATGGAGATTA-GTATGAGTATTAATGTTTGTCGT-ATTTAAGAG-ACAAAC
* * * ** * * * *
181706 TTAGACTTTA-C-GAAA-TTTGGTAGGAAAA--ATG
124 TTTGACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * **
181737 CCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTA-AA--ACACTACGTTTATCCTGCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGT--GTTTATGGTGCCT
* * * * * *
181799 AATCCTGAAAAG-GTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTAAGGGACAAACTTT
63 AATCCTGAAAAGAATGGA-GATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTT
* * ** * *
181863 GATTCTATGAAAAATGGCGAAAAGAAAAGCTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * * *
181896 TCTTGTG-ACCCTAAAGCAACAATGTCATGTTTCCTAATGA-AGGGAATGTGTTTTTGGCTTCGC
1 TCTTGCGAAACC-AAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGC-C
* * * * * ** * * **
181959 -AGTCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAG-GTATGAACT
62 TAATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* *** * * *
182021 TTGA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
125 TTGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * ** *
182056 TCGTGCAAAAGAAAATCATAAATATCATTTATCCTAACGAGGA-GAATGTGTTTACAGTGTCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * * *
182120 TCAC--AAAATGAATGAAGATCATTACT-AG-ATTCCATGTTTGT-TTCATTTGAG-GCACGAAC
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAG-ACAAAC
* * * ** * *
182179 ATAGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
124 TTTGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * * *
182214 TCTTGCGAAACCAAATCATAAATAT-GTGTATCCTAATAAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * * * ** * * *
182276 ATCTTGAAAAGGATGG-GCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAAAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * * *
182340 ATTCTATAAAAAACGGTCGAAAGAAAAGCATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
182372 TCTCGCGACACCAAAGCATCAATGTCAAGTATCCTAATGA-AGGGATTGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * * ** * ** * * * **
182435 AGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAG-GTATGAACTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* * * * *
182499 GA-TTTA-AAGGAAAATAG-GGCAAAGAAATGATTT
127 GACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* ** ** ** * * * * **
182532 CCAAGTAAAAAAAAATCATCAATATCATTTATCCTGATGAGGA-GAATGTGTTTACAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * ** *
182596 TCC-CAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCATGAACT
65 TCCTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGACA--AACT
* * * ** ** *
182656 TAGACTTTA-CTAAAATTGATGGAAA-AATTGCCTT
125 TTGACTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * *
182690 TCTTGCGAGAGCAGAGCATCAATATCATGTATCCTAATGAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * *
182753 ATCCTGAAAAGAATGGGGATTAGTATTAGTATTAATGTTTGTCGTTTTTAAGAGACAAACTTTGA
64 ATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
*
182818 CTCTATC-AAATC-GATGGAAAGAAAAGCTTT
129 CTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * * * * * * *
182848 TCTTGTGACACCAAAGCAGCAATGTGATGTATCCTAATGA-AGGGAATGTGTTTTTGGCTTCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * ** * * * *
182912 GTGTTGAAAAGATTGGAG-TCT-GT-TGCAAGAATCGATGCTTGGCTTATTTATG-G-CATGAAC
64 ATCCTGAAAAGAATGGAGAT-TAGTATG--AGTATTAATGTTTGTCGTATTTAAGAGACA--AAC
* * * *
182972 TTTGAC-GTA--AAGGAA-AGTAGGGCAAAGAAAGGATTT
124 TTTGACTCTATCAA-AAACAGT--GG-AAAGAAAAGCTTT
* * * ** * * * * *
183008 GCATGCAAAATAAAATCATCAATATCATTTATCCCAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
183072 TCAC--AAAATGAATGAAGA-TCGTTACT-AGAATCCAA-GTTTGTC-TCATTT--GAGGCATGA
65 TC-CTGAAAA-GAATGGAGATTAG-TA-TGAGTAT-TAATGTTTGTCGT-ATTTAAGAGACA--A
* * ** * * * *
183129 ACTTAGACTTTA-CAAAAATTGGCGGGAA-AAATGCCTT
122 ACTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * * *
183166 TCTTGC-AAACCCAAAGCATCAATATGATATGTCCTAATGAGAA-GACGATGTTTACGGTGCCTA
1 TCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAG-TGTTTATGGTGCCTA
* * *
183229 ATCCTGAAAATAACTAG-GATTAGTATGAGTA-TACATGTTTATCGTATTTAAGAGACAAACTTT
64 ATCCTGAAAAGAA-TGGAGATTAGTATGAGTATTA-ATGTTTGTCGTATTTAAGAGACAAACTTT
* * * *
183292 GATTCTATCAAAAACGGTGAAAAGAAAAACTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * **
183325 TCTTGCGAGACCAAAGCATCAATATCATTTAT-CTGAATAAGGA-GAATGTGTTTACAGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * ** * * *
183388 ATCAC--AAAATGAATGAAGATCATTTATG-GAATCCATATTTGTC-TCATTTGAG-GCACGAAC
64 ATC-CTGAAAA-GAATGGAGATTA-GTATGAGTATTAATGTTTGTCGT-ATTTAAGAG-ACAAAC
* * * ** * * * *
183448 TTAGACTTTA-C-GAAA-TTTGGTAGGAAAA--ATG
124 TTTGACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * **
183479 CCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTA-AA--ACACTACGTTTATCCTGCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGT--GTTTATGGTGCCT
* * * * * *
183541 AATCCTGAAAAG-GTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTAAGGGACAAACTTT
63 AATCCTGAAAAGAATGGA-GATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTT
* * ** *
183605 GATTCTATGAAAAATGGTGAAAAGAAAAGCTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
183638 TCTTGTG-ACCCTAAAGCATCAATGTCATGTTTCCTAATGA-AGGGAATGTGTTTTTGGCTTCGC
1 TCTTGCGAAACC-AAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGC-C
* * * * * ** * * **
183701 -AGTCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAG-GTATGAACT
62 TAATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* *** * * *
183763 TTGA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
125 TTGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * ** *
183798 TCGTGCAAAAGAAAATCATAAATATCATTTATCCTAACGAGGA-GAATGTGTTTACAGTGTCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * * *
183862 TCAC--AAAATGAATGAAGATCATTACT-AG-ATTCCATGTTTGT-TTCATTTGAG-GCACGAAC
65 TC-CTGAAAA-GAATGGAGATTAGTA-TGAGTATT-AATGTTTGTCGT-ATTTAAGAG-ACAAAC
* * * ** * *
183921 ATAGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
124 TTTGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
183956 TCTTGCGAAACCAAATCATCAATAT-GTGTATCCTAATAAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * * * ** * * *
184018 ATCTTGAAAAGGATGG-GCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAAAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * * *
184082 ATTCTATAAAAAACGGTCGAAAGAAAAGCATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
184114 TCTCGCGACACCAAAGCATCAATGTCAAGTATCCTAATGA-AGGGATTGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* * * * ** * ** * * * **
184177 AGTCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAG-GTATGAACTTT
63 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACTTT
* * * * *
184241 GA-TTTA-AAGGAAAATAG-GGCAAAGAAATGATTT
127 GACTCTATCA--AAAACAGTGG-AAAGAAAAGCTTT
* ** ** ** * * * * **
184274 CCAAGTAAAAAAAAATCATCAATATCATTTATCCTGATGAGGA-GAATGTGTTTACAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * * ** *
184338 TCC-CAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAGGCATGAACT
65 TCCTGAAAA-GAATGGAGATTAGTA-TGAGTATTAATGTTTGTCGT-ATTTAAGAGACA--AACT
* * * ** ** *
184398 TAGACTTTA-CTAAAATTGATGGAAA-AATTGCCTT
125 TTGACTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * *
184432 TCTTGCGAGAGCAGAGCATCAATATCATGTATCCTAATGAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * * *
184495 ATCCTGAAAAGAATGGGGATTAGTATTAGTATTAATGTTTGTCATTTTTAAGAGACAAACTTTGA
64 ATCCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGA
*
184560 CTCTATC-AAATC-GATGGAAAGAAAAGCTTT
129 CTCTATCAAAAACAG-TGGAAAGAAAAGCTTT
* * * * * * * *
184590 TCTTGTGACACCAAAGCAGCAATGTGATGTATCCTAATGA-AGGGAATGTGTTTTTGGCTTCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGCCTA
* ** * * ** * * * *
184654 GTGTTGAAAAGATTGGAG-TCT-GT-TGCAAGAATCGATGCTTGGCTTATTTATG-G-CATGAAC
64 ATCCTGAAAAGAATGGAGAT-TAGTATG--AGTATTAATGTTTGTCGTATTTAAGAGACA--AAC
* * * *
184714 TTTGAC-GTA--AAGGAA-AGTAGGGCAAAGAAAGGATTT
124 TTTGACTCTATCAA-AAACAGT--GG-AAAGAAAAGCTTT
* * * ** * * * * *
184750 GCATGCAAAATAAAATCATCAATATCATTTATCCCAATGAGGA-GAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * * *
184814 TCAC--AAAATGAATGAAGA-TCGTTACT-AGAATCCAA-GTTTGTC-TCATTT--GAGGCATGA
65 TC-CTGAAAA-GAATGGAGATTAG-TA-TGAGTAT-TAATGTTTGTCGT-ATTTAAGAGACA--A
* * ** * * * *
184871 ACTTAGACTTTA-CAAAAATTGGCGGGAA-AAATGCCTT
122 ACTTTGACTCTATCAAAAA-CAGTGGAAAGAAAAGCTTT
* * * * *
184908 TCTTGC-AAGCCCAAAGCATCAATATGATGTTTCCTAATGAGAA-GACGATGTTTACGGTGCCTA
1 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAG-TGTTTATGGTGCCTA
* *
184971 ATCCTGAAAATAACTGG-GATTAGTATGAGTA-TACATGTTTATCGTATTTAAGAGACAAACTTT
64 ATCCTGAAAAGAA-TGGAGATTAGTATGAGTATTA-ATGTTTGTCGTATTTAAGAGACAAACTTT
* * * *
185034 GATTCTATCAAAAACGGTGAAAAGAAAAACTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * **
185067 TCTTGCGACACCAAAGCATCAATATCATTTAT-CTGAATAAGGA-GAATGTGTTTACAGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGAGAAGGAA-GTGTTTATGGTGCCTA
* * * * * ** * * *
185130 ATCAC--AAAATGAATGAAGATCATTTCTG-GAATCCATATTTGTC-TCATTTGAG-GCACGAAC
64 ATC-CTGAAAA-GAATGGAGATTA-GTATGAGTATTAATGTTTGTCGT-ATTTAAGAG-ACAAAC
* * * ** * * * *
185190 TTAGACTTTA-C-GAAA-TTTGGTAGGAAAA--ATG
124 TTTGACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * **
185221 CCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTA-AA--ACACTACGTTTATCCTGCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGT--GTTTATGGTGCCT
* * * * * *
185283 AATCCTGAAAAG-GTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTAAGGGACAAACTTT
63 AATCCTGAAAAGAATGGA-GATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTT
* * ** *
185347 GATTCTATGAAAAATGGTGAAAAGAAAAGCTTT
127 GACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
185380 TCTTGTG-ACCCTAAAGCATCAATGTCATGTTTCCTAATGA-AGGGAATGTGTTTTTGGCTTCGC
1 TCTTGCGAAACC-AAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGG-TGC-C
* * * * * ** * * **
185443 -AGTCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAG-GTATGAACT
62 TAATCCTGAAAAGAATGGAGATTAG-TATGAGTATTAATGTTTGTCGTATTTAAGAG-ACAAACT
* *** * * *
185505 TTGA-TTTGAAGGAAAATAG-GGCAAAGAAAAGATTC
125 TTGACTCT-ATCAAAAACAGTGG-AAAGAAAAGCTTT
* * ** * * * * * ** *
185540 TCGTGCAAAAGAAAATCATAAATATCATTTATCCTAACGAGGA-GAATGTGTTTACAGTGTCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAA-GTGTTTATGGTGCCTAA
* * * ** * * * * *
185604 TCAC--AAAATGAATGAAGATCATTACAAG-ATTCCATGTTTGT-TTCATTTGAG-GCACGAACA
65 TC-CTGAAAA-GAATGGAGATTAGTATGAGTATT-AATGTTTGTCGT-ATTTAAGAG-ACAAACT
* * ** * *
185664 TAGACTTTA-CAAAAATTGGTGGGAAA-AATA-CCTT
125 TTGACTCTATCAAAAA-CAGT-GGAAAGAAAAGCTTT
* * *
185698 TCTTGCGAAACCAAATCATCAATAT-GTGTATCCTAATAAGAA-GACTA-TGTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA--AGTGTTTATGGTGCCTA
* * * * ** * * *
185760 ATCTTGAAAAGGATGG-GCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAAAGACAAACTTTG
64 ATCCTGAAAAGAATGGAG-ATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTG
* * * * *
185824 ATTCTATAAAAAACGGTCGAAAGAAAAGCATT
128 ACTCTATCAAAAACAGTGGAAAGAAAAGCTTT
* * * * * * *
185856 TCTCGCGACACCAAAGCATCAATGTCAAGTATCCTAATGA-AGGGATTGTGCTTT-TGGCTTCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGA-AGTG-TTTATGG-TGCCT
* *
185919 AGTCTTGAAAAGAATGGAGA
63 AATCCTGAAAAGAATGGAGA
185939 CTATTACAAG
Statistics
Matches: 16375, Mismatches: 5037, Indels: 3701
0.65 0.20 0.15
Matches are distributed among these distances:
147 8 0.00
148 47 0.00
149 7 0.00
151 7 0.00
152 11 0.00
153 128 0.01
154 254 0.02
155 45 0.00
156 192 0.01
157 980 0.06
158 5022 0.31
159 4763 0.29
160 3287 0.20
161 1282 0.08
162 250 0.02
163 62 0.00
164 30 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (159 bp):
TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGAAGTGTTTATGGTGCCTAAT
CCTGAAAAGAATGGAGATTAGTATGAGTATTAATGTTTGTCGTATTTAAGAGACAAACTTTGACT
CTATCAAAAACAGTGGAAAGAAAAGCTTT
Found at i:178267 original size:306 final size:313
Alignment explanation
Indices: 177641--178274 Score: 788
Period size: 306 Copynumber: 2.0 Consensus size: 313
177631 AAAAGAAAAT
*
177641 CATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCCAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* *
177706 ATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGG
66 ATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCGG
* * *
177771 GAAAAATGCCTTTCTTGCAAACCCAAAGCATCAATATGATGTGTCCTAATGAGAAGACGATGTTT
131 GAAAAATGCCTTAC-TGCAAACCCAAAGCATCAATATGATGTATCCTAATGAGAAGACGA--TCT
* *** * *
177836 ATGGTGTGTAACCTGAAAATAACTGGGATTAGTATGAGTATACATGTTTATCGTATTTAAGAGAC
193 ACGGTACCTAACCTGAAAATAACTGGGATTAGTATGAGTATACAAGTTTATCATATTTAAGAGAC
177901 AAACTTTAATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
258 AAACTTTAATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
** *
177957 CATCAATATCATTTATCTTAATAAGGAGAATGTGTTTA-CGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCCAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * ** *
178021 ATCATTTCTGGAATCCATA-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAATTTTGGTG
66 ATCATTACTAGAATCCA-AGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCG
* * *
178085 GGAAAATTGCCTTAC-G-AAA-CTAAAGCATCAATATCG-TGTATCCTAATTA-AA-AC-A-CTA
130 GGAAAAATGCCTTACTGCAAACCCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACGATCTA
* ** * *
178142 CGTTACCTAATCCT-AAAA-AGGTCGAGGATTAGTATGAGTATTCAAGTTTGTCATATTTAAGAG
194 CGGTACCTAA-CCTGAAAATAACT-G-GGATTAGTATGAGTATACAAGTTTATCATATTTAAGAG
* * * * * *
178205 ACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCCAAAG
256 ACAAACTTTAATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
*
178263 CATCAATGTCAT
1 CATCAATATCAT
178275 GATTCCTAAA
Statistics
Matches: 277, Mismatches: 36, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
304 2 0.01
305 12 0.04
306 100 0.36
308 1 0.00
309 2 0.01
310 2 0.01
311 25 0.09
312 4 0.01
313 1 0.00
315 92 0.33
316 36 0.13
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (313 bp):
CATCAATATCATTTATCCCAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCGG
GAAAAATGCCTTACTGCAAACCCAAAGCATCAATATGATGTATCCTAATGAGAAGACGATCTACG
GTACCTAACCTGAAAATAACTGGGATTAGTATGAGTATACAAGTTTATCATATTTAAGAGACAAA
CTTTAATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
Found at i:178783 original size:477 final size:477
Alignment explanation
Indices: 177957--181635 Score: 4491
Period size: 477 Copynumber: 7.7 Consensus size: 477
177947 GACACCAAAG
*
177957 CATCAATATCATTTATCTTAAT-AAGGAGAATGTGTTTAC-GTGCCTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * **
178020 GATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAATTTTGGTG
65 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
** * * * * * *
178085 GG-AAAAT---TGCCTTACGAAACTAAAGCATCAATATCGTGTATCCTAATTAAAACACTACG-T
130 GGAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * *
178145 TA-----CCTAATCCTAAAAAGG-TCGAGGATTAGTATGAGTATTCAAGTTTGTCATATTTAAGA
195 TATGGTGCCTAATCCTGAAAAGGAT-G-GGATTAGTATGAGTATTCATGTTTTTCATATTTAAGA
* * * *
178204 GACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCCAAAGCATCAA
258 GACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
178269 TGTCATG-ATTCCTAAAGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTA
323 TGTCATGTA-TCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTA
* *
178333 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAG
387 TTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAG
*
178398 AAAAGATTCTCGA-GCAAAAGAAAAT
452 AAAAGATTCTCCATGCAAAAGAAAAT
* * *
178423 CATAAATATCATTTATCCTAACGAAGAGAATGTGTTTACAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
178488 ATCATTACTAGAATCCATGTTTGTTTCATTTGAAGCACGAACATAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
178553 GAAAAATACTTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCTTAAAGATAAGACTATGTTT
131 GAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * ** * *
178618 ATGGTGCCCAATCCTGAAAAGGATGGGCATCAGGGTCAGTATTCATGTTTTTCATATTGAAGAGA
196 ATGGTGCCTAATCCTGAAAAGGATGGG-ATTAGTATGAGTATTCATGTTTTTCATATTTAAGAGA
* * * *
178683 CAAACTTTGATTCTATTAAAAACGGTGGGAAA-AAAAGCATTTCTCGCGACACCAAAGCATCAAT
260 CAAACTTTGATTCTATCAAAAACGGT-GAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
178747 GTCATGTATCCTAATGAAGCGAATGTGTTTTTGGCTTCGTAGTCTTGAAAAGAATAGAGACTGTT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATT
* *
178812 ACAAGAATCGATGCTTGCCTTATTTAAGCTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
389 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAA
* *
178877 AGGATT-TCCATGCAAAAAAAAAAAT
454 AAGATTCTCCATGC--AAAAGAAAAT
*
178902 CATCAATATCATTTATCCTAATG-AGTAGAATGTGTTTACAGTGCCTAAT--C--AATGAATGAG
1 CATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * *
178962 GATCATTACTAGAATCCATGTTTATCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTAGTG
65 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * * *
179027 GG-AAAATGCCTTTCTTGCGTAACCAAAGTATCAATAT-GATGTATCCTAACGACAAGGCTATGT
130 GGAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGT
* * * *
179090 TTATGGTGTCTAATCCTGAAAA-AACAGGGATTAGTATGAGTATGCATTACATGTTTGTT-GTAT
194 TTATGGTGCCTAATCCTGAAAAGGA-TGGGATTAGTATGAG--T--ATT-CATGTTT-TTCATAT
* * * *
179153 TTAAAAGACAAACTTTGATTCTGTCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGATACCAAAG
252 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * * *
179218 CATCAATGTCATTTATCCCAATTG-AGGGAAAGTGTTTTGGGCTTCCCAATCTTG-AAAGAAAGG
317 CATCAATGTCATGTATCCTAA-TGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGG
* ** * * * *
179281 AGACTGTTATGAGAATCAATGCTTGTCTTATTTAAGGTATGAACTTCGATTTGAAGGAAAACAGG
381 AGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGG
179346 GCAAAGAAAAGATTC-CCATGCAAAAGAAAAT
446 GCAAAGAAAAGATTCTCCATGCAAAAGAAAAT
* * *
179377 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG-CTAATCACAAATTGAATGAAA
1 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * * *
179441 ATCATTACTAGATTCTATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACGAAATTTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * *
179506 GAAAAATGCCTTTCTTGCGAAACTAAAGGATGAATATCGCGTATCATAATTAAAAGACTATGTTT
131 GAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
** * * *
179571 ATGCAGCCTAATCCTGAAAAGGGTGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGGATG-GGATTAGTATGAGTATTCATGTTTTTCATATTTAAGAGA
* ** *
179636 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACCCCAAAGCATCAATG
260 CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* *
179701 TCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTATTA
325 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATTA
** * * *
179766 TGAGAATCGATGCTTGCCTTATATAAGGTATGAACTTAGAATTGAAGGAAAATAGGGCAAAGAAA
390 CAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAA
*
179831 AGA-TCCCCATGCAAAAGAAAAT
455 AGATTCTCCATGCAAAAGAAAAT
* * * **
179853 CATGAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * * ** *
179918 ATCATTACTAGATTCCATGTTTGTTTCATTTGGGGCACAAACAAAGACTTTACAAAAATTGGTCG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * ** *
179983 GAAAAATTACCTTTCTTGCGAAACCAAAGCATCAATGTTGTGTATTATAATGATAAGACTATGTT
131 GAAAAA-TACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
** * *
180048 TACAGTGCCTAATCCTGAAAAGGATGGGCATCAGTGTGAGTATTATTCATGTTTTTCATATTTAA
195 TATGGTGCCTAATCCTGAAAAGGATGGG-ATTAGTATGAG---TATTCATGTTTTTCATATTTAA
* * * * * *
180113 GAGGCAAACTTTGATTCTATAAAAAACGGTGAAAAGAAAAGCATTTCTCGTGACACCAAAGCTTC
256 GAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
180178 AATGTC----CTCCTAAGGAAGGGAATGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATAGAGACT
321 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACT
* * * *
180239 ATTACAAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTGAAGAAAAATAGGGTAAA
386 ATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAA
180304 GAAAAGATTC-CCATGCAAAAGAAAAT
451 GAAAAGATTCTCCATGCAAAAGAAAAT
* * * * *
180330 GATCAATATCATCTATCCTAATGAGGAGAATGTGTTTACAGTGCTTAATCACAAAATGGATGAAG
1 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* *
180395 ATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
180460 GAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
131 GAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * * *
180525 ATGGTGCCTAATCTTAAAAAGGATGGGCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGGATGGG-ATTAGTATGAGTATTCATGTTTTTCATATTTAAGAGA
* * * *
180590 CAAACTTTAATTCTATAAAAAACGGTCG-AAAGAAAAGCATTTCTCGCGACACCAAAGCATCAAT
260 CAAACTTTGATTCTATCAAAAACGGT-GAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
180654 GTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTACTCTTGAAAAGAATGGAGACTATT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATT
* *
180719 ATAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
389 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAA
* * * *
180784 ATGATT-TTCAAGTAAAA-AAATAT
454 AAGATTCTCCATGCAAAAGAAA-AT
* * * *
180807 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
180872 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTGATGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
180937 AAAAAATGCCTTTCTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
131 GAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * * *
181002 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCGTTTTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGGAT-GGGATTAGTATGAGTATTCATGTTTTTCATATTTAAGAGA
* * * * * *
181067 CAAACTTTGATTCTATC-AAATCGATGGAAATAAAAGCTTTTATTGCGACACCAAAGCAGCAATG
260 CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * *
181131 TGATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTGTTGAAAAGATTGGAGTCTGTTG
325 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATTA
* * * * ** * *
181196 CAAGAACCGATGCTTGGCTT-TTTATGGCATGAACTTTGACGTAAAGGAAAGTAGGGCAAAGAAA
390 CAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAA
* * *
181260 GGATT-TGCATGCAAAATAAAAT
455 AGATTCTCCATGCAAAAGAAAAT
* * * *
181282 CATCAATATCATTTATCCCAATG-AGAAGAATGTGTTTATAGTGTCTAATCCCAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * *
181346 GATCGTTACTAGAATCGAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCG
65 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * *
181411 GGAAAAATGCCTTTCTTGC-AAGCCCAAAGCATCAATAT-GATGTGTCCTAATGAGAAGACGATG
130 GGAAAAATACCTTTCTTGCGAA-ACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATG
* * ** * * *
181474 TTTACGGTGCCTAATCTTGAAAATAACTGGGATTAGTATGAGTATACATGTTTATCGTATTTAAG
193 TTTATGGTGCCTAATCCTGAAAAGGA-TGGGATTAGTATGAGTATTCATGTTTTTCATATTTAAG
*
181539 AGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAGCATCA
257 AGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
181604 ATATCATTTAT-CTGAAT-AAGGAGAATGTGTTT
322 ATGTCATGTATCCT-AATGAAGG-GAATGTGTTT
181636 ACAGTGCCTA
Statistics
Matches: 2788, Mismatches: 357, Indels: 126
0.85 0.11 0.04
Matches are distributed among these distances:
466 33 0.01
467 83 0.03
468 5 0.00
471 41 0.01
472 3 0.00
473 95 0.03
474 84 0.03
475 539 0.19
476 406 0.15
477 1016 0.36
478 261 0.09
479 125 0.04
480 14 0.01
481 83 0.03
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGGATGGGATTAGTATGAGTATTCATGTTTTTCATATTTAAGAGAC
AAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATTAC
AAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAA
GATTCTCCATGCAAAAGAAAAT
Found at i:180258 original size:953 final size:951
Alignment explanation
Indices: 177957--181635 Score: 4605
Period size: 953 Copynumber: 3.9 Consensus size: 951
177947 GACACCAAAG
* * *
177957 CATCAATATCATTTATCTTAATAAGGAGAATGTGTTTA-CGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * **
178021 ATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAATTTTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACTAAAATTGGTGG
* * * * * *
178086 GAAAATTG-C---CTTACGAAACTAAAGCATCAATATCGTGTATCCTAATTAAAACACTACG--T
131 AAAAATTGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAAAAGACTATGTTT
* * *
178145 -TA---CCTAATCCTAAAAAG-GTCGAGGATTAGTATGAG---TATTCAAGTTTGTCATATTTAA
196 ATAGTGCCTAATCCTGAAAAGAAT-G-GGATTAGTATGAGTATTATTCATGTTTGTCATATTTAA
* * *
178202 GAGACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCCAAAGCATC
259 GAGACAAACTTTGATTCTAT-AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
178267 AATGTCATGATTCCTAAAGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
323 AATGTC-T-A-TCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATAGAGACT
*
178332 ATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAA
385 ATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAA
* * * *
178397 GAAAAGATTCTCGA-GCAAAAGAAAATCATAAATATCATTTATCCTAACGAAGAGAATGTGTTTA
450 GAAAAGATTC-CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
178461 CAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAAGCAC
514 CAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* *
178526 GAACATAGACTTTACAAAAATTGGTGGGAAAAATACTTTTCTTGCAAAACCAAAGCATCAATATC
579 GAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * ** *
178591 GTGTATCTTAAAGATAAGACTATGTTTATGGTGCCCAATCCTGAAAAGGATGGGCATCAGGGTCA
644 GTGTATCCTAATGAAAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATGGGCATCAGTATGA
* *
178656 GTATTCATGTTTTTCATATTGAAGAGACAAACTTTGATTCTATTAAAAACGGTGGGAAA-AAAAG
709 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAAGAAAAG
*
178720 CATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGCGAATGTGTTTTTGGCTTC
773 CATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC
* * * * *
178785 GTAGTCTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTGCCTTATTTAAGCTATGAACTT
838 CTAGTCTTGAAAAGAATGGAGACTATTATAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTT
*
178850 TGATTTAAAGGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAAAAAAAAAT
903 TGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC---AAAAAAAAT
* * *
178902 CATCAATATCATTTATCCTAATGAGTAGAATGTGTTTACAGTGCCTAAT--C--AATGAATGAGG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * *
178963 ATCATTACTAGAATCCATGTTTATCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTAGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACTAAAATTGGTGG
* * * * * *
179028 GAAAA-TGCCTTTCTTGCGTAACCAAAGTATCAATAT-GATGTATCCTAACGACAAGGCTATGTT
131 AAAAATTGCCTTTCTTGCGAAACCAAAGCATCAATATCG-TGTATCCTAATGAAAAGACTATGTT
* * * * **
179091 TATGGTGTCTAATCCTGAAAA-AACAGGGATTAGTATGAGTATGCATTACATGTTTGTTGTATTT
195 TATAGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTAT-TATT-CATGTTTGTCATATTT
* * * *
179155 AAAAGACAAACTTTGATTCTGTCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGATACCAAAGCA
257 AAGAGACAAACTTTGATTCTAT-AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
179220 TCAATGTCATTTATCCCAATTG-AGGGAAAGTGTTTTGGGCTTCCCAATCTTG-AAAGAA-AGGA
321 TCAATGTC---TATCCTAA-TGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATA-GA
* ** * * *
179282 GACTGTTATGAGAATCAATGCTTGTCTTATTTAAGGTATGAACTTCGATTTGAAGGAAAACAGGG
381 GACTATTACAAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGG
179347 CAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
446 CAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * *
179412 TTACAGTG-CTAATCACAAATTGAATGAAAATCATTACTAGATTCTATGTTTGTCTCATTTGAGG
511 TTACAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * * * * *
179476 CACGAACTTAAACTTTACGAAATTTGGTGGGAAAAATGCCTTTCTTGCGAAACTAAAGGATGAAT
576 CACGAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAGCATCAAT
* * * ** * *
179541 ATCGCGTATCATAATTAAAAGACTATGTTTATGCAGCCTAATCCTGAAAAGGGTGAGG-ATTAGT
641 ATCGTGTATCCTAATGAAAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATG-GGCATCAGT
* *
179605 ATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
705 ATGAGTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * ** * *
179670 AAGCTTTTCTTGTAACCCCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGC
770 AAGCATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGC
* * *
179735 TTCCCAGTCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATATAAGGTATGAA
835 TTCCTAGTCTTGAAAAGAATGGAGACTATTATAAGAATCGATGCTTGCCTTATTTAAGGTATGAA
* * * **
179800 CTTAGAATTGAAGGAAAATAGGGCAAAGAAAAGATCCCCATGCAAAAGAAAAT
900 CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAAT
* * *
179853 CATGAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * ** * ** *
179918 ATCATTACTAGATTCCATGTTTGTTTCATTTGGGGCACAAACAAAGACTTTACAAAAATTGGTCG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACTAAAATTGGT-G
* * * ** *
179983 GAAAAATTACCTTTCTTGCGAAACCAAAGCATCAATGTTGTGTATTATAATGATAAGACTATGTT
130 GAAAAATTGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAAAAGACTATGTT
* * * * *
180048 TACAGTGCCTAATCCTGAAAAGGATGGGCATCAGTGTGAGTATTATTCATGTTTTTCATATTTAA
195 TATAGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGAGTATTATTCATGTTTGTCATATTTAA
* * * * *
180113 GAGGCAAACTTTGATTCTATAAAAAACGGTGAAAAGAAAAGCATTTCTCGTGACACCAAAGCTTC
259 GAGACAAACTTTGATTCTAT-AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
180178 AATGTC-CTCCTAAGGAAGGGAATGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATAGAGACTATT
323 AATGTCTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATAGAGACTATT
* * *
180242 ACAAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTGAAGAAAAATAGGGTAAAGAA
388 ACAAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAA
* *
180307 AAGATTCCCATGCAAAAGAAAATGATCAATATCATCTATCCTAATGAGGAGAATGTGTTTACAGT
453 AAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGT
* *
180372 G-CTTAATCACAAAATGGATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAA
518 GTC-TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
180436 CATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTG
582 CATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * *
180501 TATCCTAAT-AAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGGATGGGCATCAGTGTGAGT
647 TATCCTAATGAA-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATGGGCATCAGTATGAGT
* * * *
180565 ATTCTTGTTTTTCATATTTAAGAGACAAACTTTAATTCTATAAAAAACGGTCGAAAGAAAAGCAT
711 ATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCAT
* * *
180630 TTCTCGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTA
776 TTCTCGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTA
*
180695 CTCTTGAAAAGAATGGAGACTATTATAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGA
841 GTCTTGAAAAGAATGGAGACTATTATAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGA
* * * *
180760 TTTAAAGGAAAATAGGGCAAAGAAATGATTTTCAAGTAAAAAAATAT
906 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAA-AT
* *
180807 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* *
180872 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACTAAAATTGATGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACTAAAATTGGTGG
* * * *
180937 AAAAAATGCCTTTCTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
131 AAAAATTGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAAAAGACTATGTTT
* * *
181002 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTA---ATGTTTGTCGTTTTTAAG
196 ATAGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTATTCATGTTTGTCATATTTAAG
* * * * * * *
181064 AGACAAACTTTGATTCTATCAAATCGATGGAAATAAAAGCTTTTATTGCGACACCAAAGCAGCAA
260 AGACAAACTTTGATTCTATAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * * * *
181129 TGTGATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTGTTGAAAAGATTGGAGTCTGT
325 --TG-TCTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATAGAGACTAT
* * * * * ** * *
181194 TGCAAGAACCGATGCTTGGCTT-TTTATGGCATGAACTTTGACGTAAAGGAAAGTAGGGCAAAGA
387 TACAAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGA
* ** * * * *
181258 AAGGATTTGCATGCAAAATAAAATCATCAATATCATTTATCCCAATGAGAAGAATGTGTTTATAG
452 AAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAG
* * * * *
181323 TGTCTAATCCCAAAATGAATGAAGATCGTTACTAGAATCGAAGTTTGTCTCATTTGAGGCATGAA
517 TGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * *
181388 CTTAGACTTTACAAAAATTGGCGGGAAAAATGCCTTTCTTGC-AAGCCCAAAGCATCAATAT-GA
582 CATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAA-ACCAAAGCATCAATATCG-
* * * * * ** *
181451 TGTGTCCTAATGAGAAGACGATGTTTACGGTGCCTAATCTTGAAAATAACTGGG-ATTAGTATGA
645 TGTATCCTAATGAAAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGA-TGGGCATCAGTATGA
* * * * *
181515 GTATACATGTTTATCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAAC
709 GTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * *
181580 TTTTCTTGCGACACCAAAGCATCAATATCATTTAT-CTGAAT-AAGGAGAATGTGTTT
774 ATTTCTCGCGACACCAAAGCATCAATGTCATGTATCCT-AATGAAGG-GAATGTGTTT
181636 ACAGTGCCTA
Statistics
Matches: 2342, Mismatches: 337, Indels: 103
0.84 0.12 0.04
Matches are distributed among these distances:
941 2 0.00
942 71 0.03
944 2 0.00
945 72 0.03
946 9 0.00
947 1 0.00
948 1 0.00
949 35 0.01
950 50 0.02
951 74 0.03
952 381 0.16
953 673 0.29
954 627 0.27
955 174 0.07
956 84 0.04
957 72 0.03
958 14 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (951 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACTAAAATTGGTGG
AAAAATTGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAAAAGACTATGTTT
ATAGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTATTCATGTTTGTCATATTTAAGA
GACAAACTTTGATTCTATAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
GTCTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATAGAGACTATTACA
AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAG
ATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGTC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATA
GACTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATC
CTAATGAAAAGACTATGTTTATGGTGCCTAATCCTGAAAAGGATGGGCATCAGTATGAGTATTCA
TGTTTTTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTC
GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTT
GAAAAGAATGGAGACTATTATAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAA
AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAT
Found at i:181945 original size:313 final size:316
Alignment explanation
Indices: 181285--181948 Score: 792
Period size: 313 Copynumber: 2.1 Consensus size: 316
181275 ATAAAATCAT
** * * * * *
181285 CAATATCATTTATCCCAATGAGAAGAATGTGTTTATAGTGTCTAATCCCAAAATGAATGAAGATC
1 CAATATCATTTATCTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
181350 GTTACTAGAATCGAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGGGAA
66 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCAGGAA
* * * * * *
181415 AAATGCCTTTCTTGCAAGCCCAAAGCATCAATATGATGTGTCCTAATGAGAAGACGATGTTTACG
131 AAATGCCTTGC-TGCAAGACCAAAGCATCAATATGATGTATCCTAATGAAAACACGACGTTTACG
* * * * *
181480 GTGCCTAATCTTGAAAATAACTGGGATTAGTATGAGTATACATGTTTATCGTATTTAAGAGACAA
195 CTGCCTAATCCTGAAAAGAACTGGGATTAGTATGAGTATACATATTTATCATATTTAAGAGACAA
* *
181545 ACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAGCAT
260 ACTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACCAAAGCAA
181602 CAATATCATTTATCTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATC
1 CAATATCATTTATCTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATC
* * * * *
181667 ATTTCTGGAATCCATA-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAATTTGGTAGGA
66 ATTACTAGAATCCA-AGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCAGGA
* * *
181731 AAAATGCCTTGC-G-AA-ACTAAAGCATCAATATCG-TGTATCCTAATTAAAACACTACGTTTAT
130 AAAATGCCTTGCTGCAAGACCAAAGCATCAATAT-GATGTATCCTAATGAAAACACGACGTTTA-
** * * *
181792 C-CTGCCTAATCCTGAAAAGGTC-GAGGATTAGTATGAGTATTCATATTTGTCATATTTAAGGGA
193 CGCTGCCTAATCCTGAAAAGAACTG-GGATTAGTATGAGTATACATATTTATCATATTTAAGAGA
* * * *
181855 CAAACTTTGATTCTATGAAAAATGGCGAAAAGAAAAGCTTTTCTTGTGAC-CCTAAAGCAA
257 CAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACC-AAAGCAA
*
181915 CAATGTCATGTT-TCCT-AATGAAGG-GAATGTGTTT
1 CAATATCAT-TTAT-CTGAAT-AAGGAGAATGTGTTT
181949 TTGGCTTCGC
Statistics
Matches: 297, Mismatches: 42, Indels: 20
0.83 0.12 0.06
Matches are distributed among these distances:
312 3 0.01
313 158 0.53
314 12 0.04
315 1 0.00
317 122 0.41
318 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (316 bp):
CAATATCATTTATCTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATC
ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCAGGAA
AAATGCCTTGCTGCAAGACCAAAGCATCAATATGATGTATCCTAATGAAAACACGACGTTTACGC
TGCCTAATCCTGAAAAGAACTGGGATTAGTATGAGTATACATATTTATCATATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACCAAAGCAA
Found at i:182447 original size:476 final size:476
Alignment explanation
Indices: 181599--183377 Score: 2320
Period size: 476 Copynumber: 3.7 Consensus size: 476
181589 GACACCAAAG
*
181599 CATCAATATCATTTAT-CTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * * *
181663 GATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAATTTGGTA
65 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * *
181728 GGAAAAATG-C---CTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTAA-AACACTACGT
130 GGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA-TAAGAAGACTATGT
** * *
181788 TTATCCTGCCTAATCCTGAAAAG-GTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTAAG
194 TTATGGTGCCTAATCCTGAAAAGAAT-G-GGATTAGTATGAGTATTCATGTTTGTCATATTTAAG
* * * *
181852 GGACAAACTTTGATTCTATGAAAAATGG-CGAAAAGAAAAGCTTTTCTTGTGAC-CCTAAAGCAA
257 AGACAAACTTTGATTCTAT-AAAAACGGTCGAAAAGAAAAGCTTTTCTTGCGACACC-AAAGCAT
*
181915 CAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCGC-AGTCTTGAAAAGAATGGAGA
320 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC-CTAGTCTTGAAAAGAATGGAGA
* * *
181979 CTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCA
384 CTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCA
* *
182044 AAGAAAAGA-TTCTCGTGCAAAAGAAAAT
449 AAGAAAAGATTTC-CATGCAAAAAAAAAT
* * *
182072 CATAAATATCATTTATCCTAACGAGGAGAATGTGTTTACAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
182137 ATCATTACTAGATTCCATGTTTGTTTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
182202 GAAAAATACCTTTCTTGCGAAACCAAATCATAAATAT-GTGTATCCTAATAAGAAGACTATGTTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
* * * * * * *
182266 ATGGTGCCTAATCTTGAAAAGGATGGGCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAAAGA
196 ATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGA
* *
182331 CAAACTTTGATTCTATAAAAAACGGTCG-AAAGAAAAGCATTTCTCGCGACACCAAAGCATCAAT
260 CAAACTTTGATTCTAT-AAAAACGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
182395 GTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
182460 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
389 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
* * *
182525 ATGATTTCCAAGTAAAAAAAAAT
454 AAGATTTCCATGCAAAAAAAAAT
* *
182548 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTACAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
182613 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAATTGAT-G
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
182677 GAAAAATTGCCTTTCTTGCGAGAGCAGAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
131 GAAAAA-TGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTT
* * * *
182742 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTAGTATTAATGTTTGTCGTTTTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAG
* * * * * * *
182807 ACAAACTTTGACTCTATCAAATCGAT-GGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAGCAAT
259 ACAAACTTTGATTCTATAAAAACGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
182871 GTGATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTGTTGAAAAGATTGGAGTCTGTT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
* * * * ** *
182936 GCAAGAATCGATGCTTGGCTTATTTATGGCATGAACTTTGACGTAAAGGAAAGTAGGGCAAAGAA
389 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
* * *
183001 AGGATTTGCATGCAAAATAAAAT
454 AAGATTTCCATGCAAAAAAAAAT
* *
183024 CATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
183089 ATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
183154 GAAAAATGCCTTTCTTGC-AAACCCAAAGCATCAATAT-GATATGTCCTAATGAGAAGACGATGT
131 GAAAAATGCCTTTCTTGCGAAA-CCAAAGCATCAATATCG-TGTATCCTAATAAGAAGACTATGT
* * * * * *
183217 TTACGGTGCCTAATCCTGAAAATAACTAGGATTAGTATGAGTATACATGTTTATCGTATTTAAGA
194 TTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
* *
183282 GACAAACTTTGATTCTATCAAAAACGGT-GAAAAGAAAAACTTTTCTTGCGAGACCAAAGCATCA
258 GACAAACTTTGATTCTAT-AAAAACGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
183346 ATATCATTTAT-CTGAAT-AAGGAGAATGTGTTT
322 ATGTCATGTATCCT-AATGAAGG-GAATGTGTTT
183378 ACAGTGCCTA
Statistics
Matches: 1140, Mismatches: 143, Indels: 42
0.86 0.11 0.03
Matches are distributed among these distances:
473 121 0.11
474 3 0.00
475 16 0.01
476 812 0.71
477 185 0.16
478 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
AAACTTTGATTCTATAAAAACGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTAC
AAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAA
GATTTCCATGCAAAAAAAAAT
Found at i:183687 original size:313 final size:317
Alignment explanation
Indices: 183024--183690 Score: 865
Period size: 313 Copynumber: 2.1 Consensus size: 317
183014 AAAATAAAAT
* *
183024 CATCAATATCATTTATCCCAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* *
183088 GATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCG
66 GATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCA
* * * * *
183153 GGAAAAATGCCTTTCTTGCAAACCCAAAGCATCAATATGATATGTCCTAATGAGAAGACGATGTT
131 GGAAAAATGCCTTGC-TGCAAACCCAAAGCATCAATATGATATATCCTAATGAAAACACGACGTT
* * * * *
183218 TACGGTGCCTAATCCTGAAAATAACTAGGATTAGTATGAGTATACATGTTTATCGTATTTAAGAG
195 TACGCTGCCTAATCCTGAAAAGAACGAGGATTAGTATGAGTATACATATTTATCATATTTAAGAG
183283 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGAGACCAAAG
260 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGAGACCAAAG
183341 CATCAATATCATTTAT-CTGAAT-AAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
1 CATCAATATCATTTATCCT-AATGAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
* * * *
183404 AGATCATTTA-TGGAATCCATA-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAATTTG
65 AGATC-GTTACTAGAATCCA-AGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * *
183467 GTAGGAAAAATGCCTTGC-G-AAA-CTAAAGCATCAATATCG-TGTATCCTAATTAAAACACTAC
128 GCAGGAAAAATGCCTTGCTGCAAACCCAAAGCATCAATAT-GATATATCCTAATGAAAACACGAC
** * *
183528 GTTTATC-CTGCCTAATCCTGAAAAGGTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTA
192 GTTTA-CGCTGCCTAATCCTGAAAAGAACGAGGATTAGTATGAGTATACATATTTATCATATTTA
* * * * * *
183592 AGGGACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGA-CCCTAAAG
256 AGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGAGACC-AAAG
*
183654 CATCAATGTCATGTT-TCCTAATGAAGG-GAATGTGTTT
1 CATCAATATCAT-TTATCCTAATGAAGGAGAATGTGTTT
183691 TTGGCTTCGC
Statistics
Matches: 306, Mismatches: 34, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
312 2 0.01
313 160 0.52
314 13 0.04
315 1 0.00
316 1 0.00
317 125 0.41
318 4 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (317 bp):
CATCAATATCATTTATCCTAATGAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
GATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCA
GGAAAAATGCCTTGCTGCAAACCCAAAGCATCAATATGATATATCCTAATGAAAACACGACGTTT
ACGCTGCCTAATCCTGAAAAGAACGAGGATTAGTATGAGTATACATATTTATCATATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGAGACCAAAG
Found at i:184183 original size:476 final size:475
Alignment explanation
Indices: 183341--185119 Score: 2370
Period size: 476 Copynumber: 3.7 Consensus size: 475
183331 GAGACCAAAG
*
183341 CATCAATATCATTTAT-CTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * *
183405 GATCATTTA-TGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAATTTGGT
65 GATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * *
183469 AGGAAAAATG-C---CTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTAA-AACACTACG
129 GGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA-TAAGAAGACTATG
** * *
183529 TTTATCCTGCCTAATCCTGAAAAG-GTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTAA
193 TTTATGGTGCCTAATCCTGAAAAGAAT-G-GGATTAGTATGAGTATTCATGTTTGTCATATTTAA
* * *
183593 GGGACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGAC-CCTAAAGCAT
256 GAGACAAACTTTGATTCTAT-AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACC-AAAGCAT
*
183657 CAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCGC-AGTCTTGAAAAGAATGGAGA
319 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC-CTAGTCTTGAAAAGAATGGAGA
* * *
183721 CTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCA
383 CTGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCA
* *
183786 AAGAAAAGA-TTCTCGTGCAAAAGAAAAT
448 AAGAAAAGATTTC-CATGCAAAAAAAAAT
* * *
183814 CATAAATATCATTTATCCTAACGAGGAGAATGTGTTTACAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
183879 ATCATTACTAGATTCCATGTTTGTTTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
183944 GAAAAATACCTTTCTTGCGAAACCAAATCATCAATAT-GTGTATCCTAATAAGAAGACTATGTTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
* * * * * * *
184008 ATGGTGCCTAATCTTGAAAAGGATGGGCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAAAGA
196 ATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGA
* *
184073 CAAACTTTGATTCTATAAAAAACGGTCG-AAAGAAAAGCATTTCTCGCGACACCAAAGCATCAAT
260 CAAACTTTGATTCTAT-AAAAACGGT-GAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
184137 GTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATT
323 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
184202 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
388 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
* * *
184267 ATGATTTCCAAGTAAAAAAAAAT
453 AAGATTTCCATGCAAAAAAAAAT
* *
184290 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTACAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
184355 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAATTGAT-G
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
184419 GAAAAATTGCCTTTCTTGCGAGAGCAGAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
131 GAAAAA-TGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTT
* * *
184484 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTAGTATTAATGTTTGTCATTTTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAG
* * * * * * *
184549 ACAAACTTTGACTCTATCAAATCGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAGCAATG
259 ACAAACTTTGATTCTATAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * *
184614 TGATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTGTTGAAAAGATTGGAGTCTGTTG
324 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTA
* * * ** *
184679 CAAGAATCGATGCTTGGCTTATTTATGGCATGAACTTTGACGTAAAGGAAAGTAGGGCAAAGAAA
389 CAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAA
* * *
184744 GGATTTGCATGCAAAATAAAAT
454 AGATTTCCATGCAAAAAAAAAT
* *
184766 CATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
184831 ATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
184896 GAAAAATGCCTTTCTTGC-AAGCCCAAAGCATCAATAT-GATGTTTCCTAATGAGAAGACGATGT
131 GAAAAATGCCTTTCTTGCGAA-ACCAAAGCATCAATATCG-TGTATCCTAATAAGAAGACTATGT
* * * * *
184959 TTACGGTGCCTAATCCTGAAAATAACTGGGATTAGTATGAGTATACATGTTTATCGTATTTAAGA
194 TTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
*
185024 GACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAA
258 GACAAACTTTGATTCTAT-AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
185089 TATCATTTAT-CTGAAT-AAGGAGAATGTGTTT
322 TGTCATGTATCCT-AATGAAGG-GAATGTGTTT
185120 ACAGTGCCTA
Statistics
Matches: 1145, Mismatches: 137, Indels: 44
0.86 0.10 0.03
Matches are distributed among these distances:
472 3 0.00
473 118 0.10
474 3 0.00
475 15 0.01
476 816 0.71
477 187 0.16
478 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (475 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
AAACTTTGATTCTATAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
ATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTACA
AGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAAAAAAT
Found at i:185429 original size:313 final size:317
Alignment explanation
Indices: 184766--185432 Score: 874
Period size: 313 Copynumber: 2.1 Consensus size: 317
184756 AAAATAAAAT
* *
184766 CATCAATATCATTTATCCCAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * *
184830 GATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCG
66 GATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCA
* * * * * *
184895 GGAAAAATGCCTTTCTTGCAAGCCCAAAGCATCAATATGATGTTTCCTAATGAGAAGACGATGTT
131 GGAAAAATGCCTTGC-TGCAAGACCAAAGCATCAATATGATGTATCCTAATGAAAACACGACGTT
* * * *
184960 TACGGTGCCTAATCCTGAAAATAACTGGGATTAGTATGAGTATACATGTTTATCGTATTTAAGAG
195 TACGCTGCCTAATCCTGAAAAGAACTGGGATTAGTATGAGTATACATATTTATCATATTTAAGAG
185025 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
260 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
185083 CATCAATATCATTTAT-CTGAAT-AAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
1 CATCAATATCATTTATCCT-AATGAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGA
* * * *
185146 AGATCATTTCTGGAATCCATA-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAATTTGG
65 AGATCATTACTAGAATCCA-AGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
185210 TAGGAAAAATGCCTTGC-G-AA-ACTAAAGCATCAATATCG-TGTATCCTAATTAAAACACTACG
129 CAGGAAAAATGCCTTGCTGCAAGACCAAAGCATCAATAT-GATGTATCCTAATGAAAACACGACG
** * *
185271 TTTATC-CTGCCTAATCCTGAAAAGGTC-GAGGATTAGTATGAGTATTCATATTTGTCATATTTA
193 TTTA-CGCTGCCTAATCCTGAAAAGAACTG-GGATTAGTATGAGTATACATATTTATCATATTTA
* * * * *
185334 AGGGACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGAC-CCTAAAG
256 AGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACC-AAAG
*
185396 CATCAATGTCATGTT-TCCTAATGAAGG-GAATGTGTTT
1 CATCAATATCAT-TTATCCTAATGAAGGAGAATGTGTTT
185433 TTGGCTTCGC
Statistics
Matches: 307, Mismatches: 33, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
312 3 0.01
313 161 0.52
314 12 0.04
315 1 0.00
316 1 0.00
317 128 0.42
318 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (317 bp):
CATCAATATCATTTATCCTAATGAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCA
GGAAAAATGCCTTGCTGCAAGACCAAAGCATCAATATGATGTATCCTAATGAAAACACGACGTTT
ACGCTGCCTAATCCTGAAAAGAACTGGGATTAGTATGAGTATACATATTTATCATATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACACCAAAG
Found at i:185925 original size:476 final size:473
Alignment explanation
Indices: 185087--186014 Score: 1314
Period size: 476 Copynumber: 2.0 Consensus size: 473
185077 CCAAAGCATC
*
185087 AATATCATTTATCTGAATAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCTGAACAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCA
* ** * * *
185152 TTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAATTTGGTAGGAAA
66 TTACAAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTAGGAAA
* *
185217 AATGCCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTAAAACACTACGTTTATCCTGCC
131 AATCCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATTAAAACACTACGTTTATCCTGCC
* **
185282 TAATCCTGAAAAGGTCGAGGATTAGTATGAGTATTCATATTTGTCATATTTAAGGGACAAACTTT
196 TAATCCTGAAAAGGTCGAGGATCAGTATGAGTATTCATATTTGTCATATTTAAAAGACAAACTTT
* * * * * * *
185347 GATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCTAAAGCATCAATGTCATGTTT
261 GATTCTATAAAAAACGGTGAAAAGAAAAGCATTTCTCGCGACCCTAAAGCATCAATGTCAAGTAT
* * *
185412 CCTAATGAAGGGAATGTGTTTTTGGCTTCGCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATC
326 CCTAATGAAGGGAATGTGCTTTTGGCTTCGCAGTCTTGAAAAGAATGGAGACTATTACAAGAATC
* * *
185477 GATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTCTC
391 GAAGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCTC
185542 GTGCAAAAGAAAATCATA
456 GTGCAAAAGAAAATCATA
* *
185560 AATATCATTTATCCT-AACGAGGAGAATGTGTTTACAGTGTCTAATCACAAAATGAATGAAGATC
1 AATATCATTTAT-CTGAACAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
185624 ATTACAAGATTCCATGTTTGTTTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAA
65 ATTACAAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTAGGAA
* * *
185689 AAATACCTTTCTTGCGAAACCAAATCATCAATAT-GTGTATCCTAA-TAAGAAGACTATGTTTAT
130 AAAT-CC---CTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATTAA-AACACTACGTTTAT
** * * * * *
185752 GGTGCCTAATCTTGAAAAGGAT-G-GGCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAAAGA
190 CCTGCCTAATCCTGAAAAGG-TCGAGG-ATCAGTATGAGTATTCATATTTGTCATATTTAAAAGA
185815 CAAACTTTGATTCTATAAAAAACGGTCG-AAAGAAAAGCATTTCTCGCGACACC-AAAGCATCAA
253 CAAACTTTGATTCTATAAAAAACGGT-GAAAAGAAAAGCATTTCTCGCGAC-CCTAAAGCATCAA
*
185878 TGTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTC-CTAGTCTTGAAAAGAATGGAGACTA
316 TGTCAAGTATCCTAATGAAGGGAATGTGCTTTTGGCTTCGC-AGTCTTGAAAAGAATGGAGACTA
185942 TTACAAGAATCGAAGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
380 TTACAAGAATCGAAGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
*
186007 AAATGATT
445 AAAAGATT
186015 TCCAAGTAAA
Statistics
Matches: 401, Mismatches: 43, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
473 117 0.29
474 3 0.01
475 6 0.01
476 249 0.62
477 26 0.06
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AATATCATTTATCTGAACAAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCA
TTACAAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTAGGAAA
AATCCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATTAAAACACTACGTTTATCCTGCC
TAATCCTGAAAAGGTCGAGGATCAGTATGAGTATTCATATTTGTCATATTTAAAAGACAAACTTT
GATTCTATAAAAAACGGTGAAAAGAAAAGCATTTCTCGCGACCCTAAAGCATCAATGTCAAGTAT
CCTAATGAAGGGAATGTGCTTTTGGCTTCGCAGTCTTGAAAAGAATGGAGACTATTACAAGAATC
GAAGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCTC
GTGCAAAAGAAAATCATA
Found at i:186823 original size:13 final size:13
Alignment explanation
Indices: 186805--186830 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
186795 CAATTTTTTG
186805 TGTATCGATACAT
1 TGTATCGATACAT
186818 TGTATCGATACAT
1 TGTATCGATACAT
186831 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:187477 original size:14 final size:14
Alignment explanation
Indices: 187458--187484 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
187448 TTCTCCCTTA
187458 AACAAAATAATTTT
1 AACAAAATAATTTT
187472 AACAAAATAATTT
1 AACAAAATAATTT
187485 CTCTCTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (14 bp):
AACAAAATAATTTT
Done.