Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold367
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 914901
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 4 of 5
Found at i:590332 original size:13 final size:13
Alignment explanation
Indices: 590314--590338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
590304 CAAAGATCAG
590314 TGTATCGATACAA
1 TGTATCGATACAA
590327 TGTATCGATACA
1 TGTATCGATACA
590339 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:590417 original size:32 final size:33
Alignment explanation
Indices: 590376--590444 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
590366 GACAGTAGCT
590376 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
* *
590408 TACATTGTATTGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
590441 TACA
1 TACA
590445 AATCGTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 19 0.56
33 15 0.44
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:593595 original size:18 final size:18
Alignment explanation
Indices: 593572--593608 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
593562 TACCAAAATT
*
593572 TTTTTTTACTTCACTAAA
1 TTTTTTTAATTCACTAAA
*
593590 TTTTTTTAATTCCCTAAA
1 TTTTTTTAATTCACTAAA
593608 T
1 T
593609 GACTATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.16, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTTTAATTCACTAAA
Found at i:594600 original size:81 final size:81
Alignment explanation
Indices: 594513--594668 Score: 206
Period size: 83 Copynumber: 1.9 Consensus size: 81
594503 TAAAATAGAA
* * * *
594513 TTTTTAAAGTAAAGATATCAT-ATTGAAAATTTTAATAAACTTCAAAGACCATTTGTGATATTAT
1 TTTTTAAAATAAAGATACCATAATCGAAAATTTTAATAAACTTCAAAGACCATTTGTGACATTA-
594577 TCTTTTTTTTCAAAATT
65 TCTTTTTTTTCAAAATT
** * * *
594594 TTTTTAAAATCTATATACCATAAATCGAAAATTTTGATGAACTTCAAAGACCATTTGTGACATTA
1 TTTTTAAAATAAAGATACCAT-AATCGAAAATTTTAATAAACTTCAAAGACCATTTGTGACATTA
594659 TCTTTTTTTT
65 TCTTTTTTTT
594669 TTTTCAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 16 0.25
82 10 0.16
83 38 0.59
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (81 bp):
TTTTTAAAATAAAGATACCATAATCGAAAATTTTAATAAACTTCAAAGACCATTTGTGACATTAT
CTTTTTTTTCAAAATT
Found at i:594666 original size:83 final size:84
Alignment explanation
Indices: 594537--594703 Score: 237
Period size: 86 Copynumber: 2.0 Consensus size: 84
594527 ATATCATATT
* * *
594537 GAAAATTTTAATAAACTTCAAAGACCATTTGTGATATTA-TTCTTTTTTTTCAAAATTTTTTTAA
1 GAAAATTTTAATAAACTTCAAAGACCATTTGTGACATTATTTCTTTTTTTTCAAAAATTTTTGAA
594601 AATCTATATACCATAAATC
66 AATCTATATACCATAAATC
* * *
594620 GAAAATTTTGATGAACTTCAAAGACCATTTGTGACATTATCTTTTTTTTTTTTCAAAAATTTTTG
1 GAAAATTTTAATAAACTTCAAAGACCATTTGTGACATTA--TTTCTTTTTTTTCAAAAATTTTTG
* *
594685 AAAGTCTATATGCCATAAA
64 AAAATCTATATACCATAAA
594704 CAACTAAGAT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
83 36 0.49
86 37 0.51
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.44
Consensus pattern (84 bp):
GAAAATTTTAATAAACTTCAAAGACCATTTGTGACATTATTTCTTTTTTTTCAAAAATTTTTGAA
AATCTATATACCATAAATC
Found at i:595043 original size:31 final size:31
Alignment explanation
Indices: 595008--595074 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
594998 AATTGACGGA
*
595008 CAATTGTGACAAA-GTTCAATTAATTGAGAA-G
1 CAATTGCGACAAATG-TCAATTAATTGA-AAGG
* *
595039 CAATTGCGGCAAATGTCAATTATTTGAAAGG
1 CAATTGCGACAAATGTCAATTAATTGAAAGG
595070 CAATT
1 CAATT
595075 ATAGCACGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 2 0.06
31 28 0.90
32 1 0.03
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (31 bp):
CAATTGCGACAAATGTCAATTAATTGAAAGG
Found at i:595117 original size:11 final size:12
Alignment explanation
Indices: 595100--595131 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
595090 AGAAAGGGAC
595100 AAGAGAAAAAAA
1 AAGAGAAAAAAA
595112 AA-AGAAAAAAA
1 AAGAGAAAAAAA
595123 AAGAGAAAA
1 AAGAGAAAA
595132 GTAAAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAGAGAAAAAAA
Found at i:596648 original size:20 final size:21
Alignment explanation
Indices: 596607--596671 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 21
596597 TCAAATGATT
*
596607 TATTAT-TATTTAATATATTATA
1 TATTATATATTTCATA-A-TATA
596629 TATT-TATATTTCATAATATA
1 TATTATATATTTCATAATATA
*
596649 -ATTATATATTTTATAATA-A
1 TATTATATATTTCATAATATA
596668 TATT
1 TATT
596672 GTTAATTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.11
20 20 0.53
21 2 0.05
22 12 0.32
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTATATATTTCATAATATA
Found at i:599865 original size:21 final size:21
Alignment explanation
Indices: 599824--599869 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
599814 AAAAAAAAAT
599824 AAAATTAATTTAAAAATAATTA
1 AAAATTAA-TTAAAAATAATTA
*
599846 AAAATTAA-TAAATATGAATTA
1 AAAATTAATTAAAAAT-AATTA
599867 AAA
1 AAA
599870 CTTTGAGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 8 0.36
22 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAATTAATTAAAAATAATTA
Found at i:608136 original size:20 final size:20
Alignment explanation
Indices: 608111--608148 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
608101 AAAAAATAAA
608111 TTTAAAAA-AAATAAATATTT
1 TTTAAAAATAAA-AAATATTT
608131 TTTAAAAATAAAAAATAT
1 TTTAAAAATAAAAAATAT
608149 ATAATTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TTTAAAAATAAAAAATATTT
Found at i:608161 original size:5 final size:5
Alignment explanation
Indices: 608153--608178 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
608143 AAATATATAA
608153 TTCTT TTCTT TTCTT TTCTT TTCTT T
1 TTCTT TTCTT TTCTT TTCTT TTCTT T
608179 ATTTTCCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTCTT
Found at i:608737 original size:20 final size:20
Alignment explanation
Indices: 608712--608751 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
608702 TTTAATATCT
608712 TAATTTTATAAAT-TTTAAAA
1 TAATTTT-TAAATCTTTAAAA
*
608732 TAATTTTTAATTCTTTAAAA
1 TAATTTTTAAATCTTTAAAA
608752 AAATCATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATTTTTAAATCTTTAAAA
Found at i:608842 original size:18 final size:15
Alignment explanation
Indices: 608782--608846 Score: 69
Period size: 16 Copynumber: 4.1 Consensus size: 15
608772 AAAAATAAAA
608782 TTAAATATTTTATATT
1 TTAAATA-TTTATATT
* *
608798 TTGAATATATATAATT
1 TTAAATATTTAT-ATT
608814 TTAAATATTTATATCT
1 TTAAATATTTATAT-T
608830 TTCAAATATTT-TATT
1 TT-AAATATTTATATT
608845 TT
1 TT
608847 TTTTAAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
15 9 0.21
16 25 0.60
17 8 0.19
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (15 bp):
TTAAATATTTATATT
Found at i:609204 original size:19 final size:19
Alignment explanation
Indices: 609182--609218 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
609172 TTTTTACTAT
609182 ATTTTGTTATAGCTTTTTG
1 ATTTTGTTATAGCTTTTTG
* *
609201 ATTTTTTTATAGGTTTTT
1 ATTTTGTTATAGCTTTTT
609219 TTTACTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.14, T:0.68
Consensus pattern (19 bp):
ATTTTGTTATAGCTTTTTG
Found at i:609220 original size:22 final size:21
Alignment explanation
Indices: 609195--609263 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 21
609185 TTGTTATAGC
*
609195 TTTTTGATTTTTTTATAGGTT
1 TTTTTTATTTTTTTATAGGTT
**
609216 TTTTTTACTTTTTTTATCAACTT
1 TTTTTTA-TTTTTTTAT-AGGTT
*
609239 TTTTTTCAATTTTTTT-TGGGTT
1 TTTTTT--ATTTTTTTATAGGTT
609261 TTT
1 TTT
609264 AGTTTTTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
21 6 0.16
22 14 0.37
23 10 0.26
24 7 0.18
25 1 0.03
ACGTcount: A:0.13, C:0.06, G:0.09, T:0.72
Consensus pattern (21 bp):
TTTTTTATTTTTTTATAGGTT
Found at i:609254 original size:12 final size:12
Alignment explanation
Indices: 609214--609255 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
609204 TTTTTATAGG
*
609214 TTTTTTTT-ACT
1 TTTTTTTTCAAT
* *
609225 TTTTTTATCAAC
1 TTTTTTTTCAAT
609237 TTTTTTTTCAAT
1 TTTTTTTTCAAT
609249 TTTTTTT
1 TTTTTTT
609256 GGGTTTTTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 7 0.28
12 18 0.72
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:612952 original size:91 final size:91
Alignment explanation
Indices: 612818--613809 Score: 996
Period size: 91 Copynumber: 11.0 Consensus size: 91
612808 TCTATTATGT
* * * ** * * *
612818 CATTAGTCAAGTATTTTCTGTCGTATCAGAATA-AATCTGATACCTCATATATATGTCACTTTTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAA-AGAATCTGATACCTCATGCATCTGTCACATCTT
*
612882 TCAGGTTTTAAGATTAATTTTATTAGG
65 TCAGGTTTCAAGATTAATTTTATTAGG
* * * * * * * *
612909 CATTAGTCAAATATTTTTTGTTATATCAGAAAGAAACTAATACCCCATGCATTTGTTACATCTTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTTT
* * * *
612974 CAAGATTCAAGATTAGTTTTATTAGA
66 CAGGTTTCAAGATTAATTTTATTAGG
* * *
613000 TATTAGTCAAATATTTTCTGTCATATCAG-AAGGA-CTGATACCTCATGCATCTGTCACATCTTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTTT
* *
613063 CGGGTTTCAAGATTAATTTTTTTAGG
66 CAGGTTTCAAGATTAATTTTATTAGG
* * *
613089 CATTAGTCAAATATTTTTTGTCATGTCA-AAAGGAATCTGATACCTCATGTATCTATCACATCTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAA-GAATCTGATACCTCATGCATCTGTCACATCTT
613153 TCAGG-TTCAAAGATTAATTTTATTAGG
65 TCAGGTTTC-AAGATTAATTTTATTAGG
* * * *
613180 TATTAGTCAAAT-TTTTCCTATCATGTCAGAAGGAATCTGACACCTCATGCATCTGTCACATCTT
1 CATTAGTCAAATATTTT-CTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTT
* * * * *
613244 TCGGGTTCCAAAATTAATTTTATTTGA
65 TCAGGTTTCAAGATTAATTTTATTAGG
* * * * *
613271 CATTAGTCAAATATTTCCTATCATGTTAGAAGGAATCTGATACTTCATGCATCTGTCACATCTTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTTT
* *
613336 CGGGTTCCAAGATTAATTTTATTAGG
66 CAGGTTTCAAGATTAATTTTATTAGG
* *
613362 CATTAGTCAAATATTTTCTATCATGTTA-AAAGGAATCTGATACC-CTATGCATCTGTCACATCC
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAA-GAATCTGATACCTC-ATGCATCTGTCACAT-C
*
613425 TTTGA-GTTTCAAGA--AA-TTTATTAGG
63 TTTCAGGTTTCAAGATTAATTTTATTAGG
* * * * * * *
613450 CATTAGTCAAATATTTCCTGTCATGTTA-AAAGGAATCTGATACTTTATACATGTGTCATATCTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAA-GAATCTGATACCTCATGCATCTGTCACATCTT
** * *
613514 TTGGGTTCCAAGATTAAGTTTATTAGG
65 TCAGGTTTCAAGATTAATTTTATTAGG
* * * * * * * *
613541 TATTAGTCAAATATTTTCTATCATGTTAGAAGGAATCTAATACCTCAGGCATCTATGACATCTTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTTT
* * **
613606 TAGGTTGCAAGATTAATTTTATTAAT
66 CAGGTTTCAAGATTAATTTTATTAGG
* * * * * * *
613632 CATTAGTTAAATATTTTTTGTCATGTCAGAAGGAATTTGATACCTCATGTATCTGTTACATTTTT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTTT
* * *
613697 CGGGTTTTAAGA--AA-TTTATTAAG
66 CAGGTTTCAAGATTAATTTTATTAGG
* * *
613720 TATTAGTCAAATATTTTCTATCATGTCA-AAAGGAATCT-ATTACCTCATGCATCTGTCAGATCT
1 CATTAGTCAAATATTTTCTGTCATGTCAGAAA-GAATCTGA-TACCTCATGCATCTGTCACATCT
613783 TTC-GAGTTTCAAGATTAATTTTATTAG
64 TTCAG-GTTTCAAGATTAATTTTATTAG
613810 AACATATTAT
Statistics
Matches: 754, Mismatches: 123, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
87 8 0.01
88 137 0.18
89 76 0.10
90 21 0.03
91 499 0.66
92 13 0.02
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (91 bp):
CATTAGTCAAATATTTTCTGTCATGTCAGAAAGAATCTGATACCTCATGCATCTGTCACATCTTT
CAGGTTTCAAGATTAATTTTATTAGG
Found at i:613619 original size:270 final size:269
Alignment explanation
Indices: 612818--613810 Score: 1091
Period size: 270 Copynumber: 3.7 Consensus size: 269
612808 TCTATTATGT
* * * * * ** * * * *
612818 CATTAGTCAAGTATTTTCTGTCGTATCAGAATAAATCTGATACCTCATATATATGTCACTTTTTT
1 CATTAGTCAAATATTTTTTGTCATGTCAAAAGGAATCTGATACCTCATGTATCTGTCACATCTTT
* * * ** * * * *
612883 CAGGTTTTAAGATTAATTTTATTAGGCATTAGTCAAATATTTTTTGTTATATCAGAAA-GAAACT
66 GA-GTTTCAAGA--AA-TTTATTAGGTATTAGTCAAATATTTCCTATCATGTCA-AAAGGAATCT
* * * * * *
612947 AATACCCCATGCATTTGTTACATCTTTCAAGATT-CAAGATT-AGTTTTATTAGATATTAGTCAA
126 GATACCTCATGCATCTGTCACATCTTTC-GGGTTCCAAGATTAAG-TTTATTAGATATTAGTCAA
* * * *
613010 ATATTTTCTGTCATATCAGAAGG-A-CTGATACCTCATGCATCTGTCACATCTTTCGGGTTTCAA
189 ATATTTTCTATCATGTTAGAAGGAATCTGATACCTCATGCATCTGTCACATCTTTCGGGTTCCAA
*
613073 GATTAATTTTTTTAGG
254 GATTAATTTTATTAGG
*
613089 CATTAGTCAAATATTTTTTGTCATGTCAAAAGGAATCTGATACCTCATGTATCTATCACATCTTT
1 CATTAGTCAAATATTTTTTGTCATGTCAAAAGGAATCTGATACCTCATGTATCTGTCACATCTTT
* * * *
613154 CAGGTTCAAAGATTAATTTTATTAGGTATTAGTCAAATTTTTCCTATCATGTCAGAAGGAATCTG
66 GAGTTTC-AAGA--AA-TTTATTAGGTATTAGTCAAATATTTCCTATCATGTCAAAAGGAATCTG
* * * * *
613219 ACACCTCATGCATCTGTCACATCTTTCGGGTTCCAAAATTAATTTTATTTGACATTAGTCAAATA
127 ATACCTCATGCATCTGTCACATCTTTCGGGTTCCAAGATTAAGTTTATTAGATATTAGTCAAATA
* *
613284 TTTCCTATCATGTTAGAAGGAATCTGATACTTCATGCATCTGTCACATCTTTCGGGTTCCAAGAT
192 TTTTCTATCATGTTAGAAGGAATCTGATACCTCATGCATCTGTCACATCTTTCGGGTTCCAAGAT
613349 TAATTTTATTAGG
257 TAATTTTATTAGG
* * * *
613362 CATTAGTCAAATATTTTCTATCATGTTAAAAGGAATCTGATACC-CTATGCATCTGTCACATCCT
1 CATTAGTCAAATATTTTTTGTCATGTCAAAAGGAATCTGATACCTC-ATGTATCTGTCACAT-CT
* * *
613426 TTGAGTTTCAAGAAATTTATTAGGCATTAGTCAAATATTTCCTGTCATGTTAAAAGGAATCTGAT
64 TTGAGTTTCAAGAAATTTATTAGGTATTAGTCAAATATTTCCTATCATGTCAAAAGGAATCTGAT
* * * * * * *
613491 ACTTTATACATGTGTCATATCTTTTGGGTTCCAAGATTAAGTTTATTAGGTATTAGTCAAATATT
129 ACCTCATGCATCTGTCACATCTTTCGGGTTCCAAGATTAAGTTTATTAGATATTAGTCAAATATT
* * * * ** *
613556 TTCTATCATGTTAGAAGGAATCTAATACCTCAGGCATCTATGACATCTTTTAGGTTGCAAGATTA
194 TTCTATCATGTTAGAAGGAATCTGATACCTCATGCATCTGTCACATCTTTCGGGTTCCAAGATTA
**
613621 ATTTTATTAAT
259 ATTTTATTAGG
* * * * *
613632 CATTAGTTAAATATTTTTTGTCATGTCAGAAGGAATTTGATACCTCATGTATCTGTTACATTTTT
1 CATTAGTCAAATATTTTTTGTCATGTCAAAAGGAATCTGATACCTCATGTATCTGTCACATCTTT
* * * *
613697 CGGGTTTTAAGAAATTTATTAAGTATTAGTCAAATATTTTCTATCATGTCAAAAGGAATCT-ATT
66 -GAGTTTCAAGAAATTTATTAGGTATTAGTCAAATATTTCCTATCATGTCAAAAGGAATCTGA-T
* * * *
613761 ACCTCATGCATCTGTCAGATCTTTCGAGTTTCAAGATTAATTTTATTAGA
129 ACCTCATGCATCTGTCACATCTTTCGGGTTCCAAGATTAAGTTTATTAGA
613811 ACATATTATA
Statistics
Matches: 609, Mismatches: 102, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
269 4 0.01
270 316 0.52
271 167 0.27
272 3 0.00
273 110 0.18
274 9 0.01
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (269 bp):
CATTAGTCAAATATTTTTTGTCATGTCAAAAGGAATCTGATACCTCATGTATCTGTCACATCTTT
GAGTTTCAAGAAATTTATTAGGTATTAGTCAAATATTTCCTATCATGTCAAAAGGAATCTGATAC
CTCATGCATCTGTCACATCTTTCGGGTTCCAAGATTAAGTTTATTAGATATTAGTCAAATATTTT
CTATCATGTTAGAAGGAATCTGATACCTCATGCATCTGTCACATCTTTCGGGTTCCAAGATTAAT
TTTATTAGG
Found at i:617204 original size:52 final size:52
Alignment explanation
Indices: 617124--617243 Score: 222
Period size: 52 Copynumber: 2.3 Consensus size: 52
617114 AAAAGTTACT
*
617124 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
*
617176 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
617228 TGCATGTATCGATACA
1 TGCATGTATCGATACA
617244 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
Found at i:617256 original size:52 final size:51
Alignment explanation
Indices: 617124--617263 Score: 210
Period size: 52 Copynumber: 2.7 Consensus size: 51
617114 AAAAGTTACT
617124 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCC
* *
617176 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCC
*
617228 TGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TGCATGTATCGATACATTA-AT-AGTGTATCGATACA
617264 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGCC
Found at i:617270 original size:13 final size:13
Alignment explanation
Indices: 617252--617276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
617242 CAAAGATCAG
617252 TGTATCGATACAA
1 TGTATCGATACAA
617265 TGTATCGATACA
1 TGTATCGATACA
617277 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:617360 original size:13 final size:13
Alignment explanation
Indices: 617342--617366 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
617332 CAAAAAAATA
617342 TGTATCGATACAT
1 TGTATCGATACAT
617355 TGTATCGATACA
1 TGTATCGATACA
617367 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:617362 original size:33 final size:33
Alignment explanation
Indices: 617320--617386 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
617310 AGTAGCTTAA
617320 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
617353 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
617386 A
1 A
617387 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:619952 original size:25 final size:25
Alignment explanation
Indices: 619906--619953 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
619896 ATTTTTTATT
* * **
619906 TAATTATAATAATAAATTACAAAGC
1 TAATCATAAGAATAAAAAACAAAGC
619931 TAATCATAAGAATAAAAAACAAA
1 TAATCATAAGAATAAAAAACAAA
619954 AAAAACTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.25
Consensus pattern (25 bp):
TAATCATAAGAATAAAAAACAAAGC
Found at i:622020 original size:2 final size:2
Alignment explanation
Indices: 622013--622043 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
622003 TAGCTCATGA
622013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
622044 ATTCTAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:622372 original size:15 final size:15
Alignment explanation
Indices: 622352--622385 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
622342 GATGTAAATT
622352 TTTAAATATT-TATTA
1 TTTAAAT-TTATATTA
622367 TTTAAATTTATATTA
1 TTTAAATTTATATTA
622382 TTTA
1 TTTA
622386 TATAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 16 0.89
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAAATTTATATTA
Found at i:623581 original size:18 final size:19
Alignment explanation
Indices: 623554--623609 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 19
623544 ATTCAGTTAA
*
623554 AATAAATATAAAAAA-ATT
1 AATAATTATAAAAAATATT
623572 AATAATTATAAATTAAATATT
1 AATAATTATAAA--AAATATT
*
623593 AAT-ATAAT-AAAAATATT
1 AATAATTATAAAAAATATT
623610 TATATCTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 7 0.21
18 11 0.33
19 2 0.06
20 7 0.21
21 6 0.18
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AATAATTATAAAAAATATT
Found at i:623677 original size:19 final size:19
Alignment explanation
Indices: 623637--623680 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
623627 TAAATATATA
*
623637 AAAAAATTACCTACTCTTTT
1 AAAAAATTACCTA-TCTCTT
623657 AAAAAATTACCCT-TCTCTT
1 AAAAAATTA-CCTATCTCTT
623676 AAAAA
1 AAAAA
623681 CTAACTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 10 0.45
20 9 0.41
21 3 0.14
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAAATTACCTATCTCTT
Found at i:623680 original size:20 final size:20
Alignment explanation
Indices: 623635--623680 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
623625 AATAAATATA
623635 TAAAAAAATTACCTACTCTT
1 TAAAAAAATTACCTACTCTT
* *
623655 TTAAAAAATTACCCTTCTC-T
1 TAAAAAAATTA-CCTACTCTT
623675 TAAAAA
1 TAAAAA
623681 CTAACTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAAAAATTACCTACTCTT
Found at i:623741 original size:2 final size:2
Alignment explanation
Indices: 623734--623771 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
623724 TTTCTTTAAA
623734 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
623772 TCAAATTGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:624009 original size:2 final size:2
Alignment explanation
Indices: 624002--624037 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
623992 ATTTGGTCGC
624002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
624038 GTTATCAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:624188 original size:2 final size:2
Alignment explanation
Indices: 624181--624220 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
624171 TTGAAACAAA
624181 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
624221 CATGAAAGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:629736 original size:32 final size:33
Alignment explanation
Indices: 629676--629737 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
629666 TACAAGCCAA
** *
629676 TGTATCGATACAATTTTTTGTGTATCGATATAT
1 TGTATCGATACAATACTTGGTGTATCGATATAT
629709 TGTATCGATAC-ATACTTGGTGTATCGATA
1 TGTATCGATACAATACTTGGTGTATCGATA
629738 CAAGTTTGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.58
33 11 0.42
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATATAT
Found at i:630448 original size:21 final size:21
Alignment explanation
Indices: 630405--630450 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
630395 TAATTCACGC
* *
630405 ATTCTCCCCCGTTTATTAATA
1 ATTCTCCCCCGTTAATCAATA
630426 ATTCTCCCCC-TTAATCAAGTA
1 ATTCTCCCCCGTTAATCAA-TA
630447 ATTC
1 ATTC
630451 ATATCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (21 bp):
ATTCTCCCCCGTTAATCAATA
Found at i:632273 original size:13 final size:13
Alignment explanation
Indices: 632255--632280 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
632245 ATAATCACCC
632255 TGTATCGATACAA
1 TGTATCGATACAA
632268 TGTATCGATACAA
1 TGTATCGATACAA
632281 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:634370 original size:15 final size:15
Alignment explanation
Indices: 634350--634380 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
634340 ATTTCTTGTG
*
634350 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
634365 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
634380 G
1 G
634381 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:636212 original size:21 final size:21
Alignment explanation
Indices: 636183--636227 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
636173 AAGTTTTCAT
*
636183 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
636203 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
636225 TTT
1 TTT
636228 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:638470 original size:13 final size:13
Alignment explanation
Indices: 638452--638477 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
638442 CAATTTTTTG
638452 TGTATCGATACAT
1 TGTATCGATACAT
638465 TGTATCGATACAT
1 TGTATCGATACAT
638478 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:638492 original size:32 final size:33
Alignment explanation
Indices: 638432--638495 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
638422 TACAAGCCAA
** *
638432 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
638465 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
638496 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:639282 original size:9 final size:9
Alignment explanation
Indices: 639268--639295 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
639258 ATGATATAAG
639268 AAGAAAAGA
1 AAGAAAAGA
639277 AAGAAAAGA
1 AAGAAAAGA
639286 AAGAAAAGA
1 AAGAAAAGA
639295 A
1 A
639296 TGTAGTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
AAGAAAAGA
Found at i:647608 original size:11 final size:11
Alignment explanation
Indices: 647592--647616 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
647582 TTTAGAAAAA
647592 TTACTAAAACC
1 TTACTAAAACC
647603 TTACTAAAACC
1 TTACTAAAACC
647614 TTA
1 TTA
647617 ATTTTACATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (11 bp):
TTACTAAAACC
Found at i:652584 original size:21 final size:23
Alignment explanation
Indices: 652553--652597 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
652543 GAAATAAAAT
*
652553 TTCATATAAT-AATTTAATTTAA
1 TTCATATAATAAATTAAATTTAA
652575 TTCA-ATAATAAATTAAATTTAA
1 TTCATATAATAAATTAAATTTAA
652597 T
1 T
652598 ATTCAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (23 bp):
TTCATATAATAAATTAAATTTAA
Found at i:663001 original size:55 final size:55
Alignment explanation
Indices: 662906--663558 Score: 681
Period size: 55 Copynumber: 11.4 Consensus size: 55
662896 ATAAAGTGTA
* * * * * * *
662906 TCCTTCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
662961 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
663016 TCCTGCTCTTT-AGGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAA-ATAAAAAG
1 TCCTGCTCTTTGA-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGT-----G
* *
663075 CATCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-ATAAAAAG
1 --TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGT-----G
663136 CATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 --TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * **
663193 TCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * *
663254 TCTTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
663309 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
663364 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * **
663419 TCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * *
663480 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
663535 TCCTGCTCTTTGAGGATTGAAAGG
1 TCCTGCTCTTTGAGGACTGAAAGG
663559 CCGCTTGTGT
Statistics
Matches: 516, Mismatches: 52, Indels: 60
0.82 0.08 0.10
Matches are distributed among these distances:
54 10 0.02
55 288 0.56
56 14 0.03
57 3 0.01
59 1 0.00
60 10 0.02
61 189 0.37
62 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:663122 original size:171 final size:172
Alignment explanation
Indices: 662929--663558 Score: 848
Period size: 171 Copynumber: 3.7 Consensus size: 172
662919 GGAGTAAAAA
* *
662929 GTGCCACCAACTCGTGTGGGCTTTG-AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCA
1 GTGCCACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCA
*
662993 ACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTT-AGGGACTGAAAGGTGCCACCAACTTGTGTA
66 ACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGA-GGACTGAAAGGTGCCACCAACTTGTGTG
663057 GGCTTTGAAAATAAAAAGCATCCTGCTCTTTGGGGACTGAAAG
130 GGCTTTGAAAATAAAAAGCATCCTGCTCTTTGGGGACTGAAAG
*
663100 GTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGC
1 GTGCCACCAACTTGTGTGGGCTTTG-----AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGC
* *
663165 CACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTG
61 CACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTG
* * * *
663230 TGTGGGCTTTGAAAAGAAAAAGCATCTTGCTCTTTGAGGACTGAAAA
126 TGTGGGCTTTGAAAATAAAAAGCATCCTGCTCTTTGGGGACTGAAAG
* * ** *
663277 ATGCCACCAACCTGTGTGGGCTTT-AAAAGGTGTCCTGCTCTTTGAGGATTGAAAGGTGCCACCA
1 GTGCCACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCA
*
663341 ACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTG
66 ACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTG
* ** *
663405 GGC-TT-----TAAAAGGTGTCCTGCTCTTCGGGGACTGAAAG
130 GGCTTTGAAAATAAAAAGCATCCTGCTCTTTGGGGACTGAAAG
* **
663442 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAAAATGC
1 GTGCCACCAACTTGTGTGGGCTTTGAAAAG-----GCATCCTGCTCTTTGAGGACTGAAAGGTGC
* * *
663507 CACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGAAAGG
61 CACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAGG
663559 CCGCTTGTGT
Statistics
Matches: 405, Mismatches: 39, Indels: 30
0.85 0.08 0.06
Matches are distributed among these distances:
165 46 0.11
166 5 0.01
170 6 0.01
171 186 0.46
172 4 0.01
177 158 0.39
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (172 bp):
GTGCCACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCA
ACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGG
GCTTTGAAAATAAAAAGCATCCTGCTCTTTGGGGACTGAAAG
Found at i:663197 original size:116 final size:116
Alignment explanation
Indices: 662905--663558 Score: 805
Period size: 116 Copynumber: 5.7 Consensus size: 116
662895 AATAAAGTGT
* * * * * *
662905 ATCCTTCTCATTGAGGAGT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTC
1 ATCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTC
* * *
662969 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TT-----TAAGAGGT
65 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
* ** * * **
663015 GTCCTGCTCTTT-AGGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAATAAAAAGCATC
1 ATCCTGCTCTTTGA-GGACTGAAAAATGCCACCAACTTGTGTGGGC-TT-----TAAAAGGTGTC
*
663079 CTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
59 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
** *
663137 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * *
663202 TCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
* *
663253 ATCTTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * * *
663318 TTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGC-TT-----TAAGAGGT
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
* *
663363 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * *
663428 TCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
* *
663479 ATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
*
663544 TTGAGGATTGAAAGG
66 TTGAGGACTGAAAGG
663559 CCGCTTGTGT
Statistics
Matches: 470, Mismatches: 53, Indels: 36
0.84 0.09 0.06
Matches are distributed among these distances:
109 1 0.00
110 128 0.27
111 7 0.01
115 2 0.00
116 281 0.60
117 2 0.00
121 2 0.00
122 46 0.10
123 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (116 bp):
ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAATAAAAAGC
Found at i:663243 original size:29 final size:29
Alignment explanation
Indices: 663155--663243 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 29
663145 CTTTGAGGAC
663155 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
** * *
663184 T-AAGAGGTGTCCTGC-TCTTCG-G-GGAC--
1 TGAA-AGGTG-CCACCAACTT-GTGTGGGCTT
663210 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
663239 TGAAA
1 TGAAA
663244 AGAAAAAGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
25 4 0.09
26 10 0.23
27 5 0.12
28 5 0.12
29 15 0.35
30 4 0.09
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.27
Consensus pattern (29 bp):
TGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:664446 original size:18 final size:18
Alignment explanation
Indices: 664425--664520 Score: 113
Period size: 18 Copynumber: 5.2 Consensus size: 18
664415 TTAAGTAGGC
*
664425 TTTTTCTTTTTTTCTTTTT
1 TTTTTCTTTTTTT-GTTTT
*
664444 TTTTTGTTTTTTTGTTTT
1 TTTTTCTTTTTTTGTTTT
*
664462 TTTTTGTTTTTTTGTTTT
1 TTTTTCTTTTTTTGTTTT
*
664480 TTTGTTTTTTTTTTGTTTTT
1 TTT-TTCTTTTTTTG-TTTT
664500 TTTTTCTTCTTTTT-TTTT
1 TTTTTCTT-TTTTTGTTTT
664518 TTT
1 TTT
664521 GAACTTTTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
18 32 0.46
19 26 0.37
20 12 0.17
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (18 bp):
TTTTTCTTTTTTTGTTTT
Found at i:664454 original size:26 final size:24
Alignment explanation
Indices: 664432--664520 Score: 115
Period size: 26 Copynumber: 3.5 Consensus size: 24
664422 GGCTTTTTCT
664432 TTTTTTCTTTTTTTTTTGTTTTTTTG
1 TTTTTT-TTTTTTTTTT-TTTTTTTG
664458 TTTTTTTTTGTTTTTTTGTTTTTTTG
1 TTTTTTTTT-TTTTTTT-TTTTTTTG
* *
664484 TTTTTTTTTTGTTTTTTTTTTCTTC
1 TTTTTTTTTT-TTTTTTTTTTTTTG
664509 TTTTTTTTTTTT
1 TTTTTTTTTTTT
664521 GAACTTTTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
24 2 0.03
25 20 0.34
26 37 0.63
ACGTcount: A:0.00, C:0.03, G:0.07, T:0.90
Consensus pattern (24 bp):
TTTTTTTTTTTTTTTTTTTTTTTG
Found at i:664528 original size:14 final size:14
Alignment explanation
Indices: 664511--664537 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
664501 TTTTCTTCTT
664511 TTTTTTTTTTGAAC
1 TTTTTTTTTTGAAC
664525 TTTTTTTTTTGAA
1 TTTTTTTTTTGAA
664538 GAGAAGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TTTTTTTTTTGAAC
Found at i:664530 original size:18 final size:17
Alignment explanation
Indices: 664434--664534 Score: 87
Period size: 18 Copynumber: 5.6 Consensus size: 17
664424 CTTTTTCTTT
*
664434 TTTTCTTTTTTTTTTGTT
1 TTTT-TTTTTTTTTTGTC
664452 TTTTTGTTTTTTTTTGT-
1 TTTTT-TTTTTTTTTGTC
* *
664469 TTTTTTGTTTTTTTGTTTT
1 TTTTTT-TTTTTTT-TGTC
*
664488 TTTTTTGTTTTTTTTTTC
1 TTTTTT-TTTTTTTTGTC
*
664506 TTCTTTTTTTTTTTTGAAC
1 TT-TTTTTTTTTTTTG-TC
664525 TTTTTTTTTT
1 TTTTTTTTTT
664535 GAAGAGAAGG
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
16 1 0.01
17 13 0.18
18 38 0.52
19 21 0.29
ACGTcount: A:0.02, C:0.04, G:0.07, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTTTTTTGTC
Found at i:664534 original size:1 final size:1
Alignment explanation
Indices: 664425--664520 Score: 102
Period size: 1 Copynumber: 96.0 Consensus size: 1
664415 TTAAGTAGGC
* * * * * * *
664425 TTTTTCTTTTTTTCTTTTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
664490 TTTTGTTTTTTTTTTCTTCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
664521 GAACTTTTTT
Statistics
Matches: 75, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:689776 original size:51 final size:51
Alignment explanation
Indices: 689616--689786 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
689606 GAAATAACGA
* * *
689616 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
689668 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
689721 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
689772 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
689787 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 32 0.33
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:689832 original size:27 final size:28
Alignment explanation
Indices: 689769--689844 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
689759 AAAATAAAGT
*
689769 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
689797 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
689824 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
689845 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:692321 original size:13 final size:13
Alignment explanation
Indices: 692303--692328 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
692293 ACAAAGATCC
692303 ATGTATCGATACA
1 ATGTATCGATACA
692316 ATGTATCGATACA
1 ATGTATCGATACA
692329 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:692324 original size:33 final size:33
Alignment explanation
Indices: 692282--692348 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
692272 AAAATTTTCA
***
692282 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
692315 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
692348 A
1 A
692349 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:692392 original size:19 final size:18
Alignment explanation
Indices: 692368--692435 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
692358 CAGTAGCTAA
692368 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
*
692387 TTATGTATCGGTAC--A-
1 TTATGTATCGATACAAAC
692402 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
692419 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
692436 TCGTTGAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
13 10 0.24
14 1 0.02
16 2 0.05
18 4 0.10
19 24 0.59
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:692412 original size:32 final size:32
Alignment explanation
Indices: 692371--692433 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
692361 TAGCTAATTA
* *
692371 TGTATCGATACAATACTTATGTATCGGTACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
692403 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
692434 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:692514 original size:20 final size:20
Alignment explanation
Indices: 692471--692552 Score: 112
Period size: 21 Copynumber: 4.0 Consensus size: 20
692461 GTTGGGACCC
692471 TGTATCGATACATTTGTGGAA
1 TGTATCGATACATTTGT-GAA
692492 TGTATCGATACATTTGTGAA
1 TGTATCGATACATTTGTGAA
***
692512 TGTATCGATACATTCTACAAA
1 TGTATCGATACATT-TGTGAA
692533 TGTATCGATACATTTG-GAA
1 TGTATCGATACATTTGTGAA
692552 T
1 T
692553 TTTTTTTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
19 3 0.05
20 18 0.33
21 34 0.62
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTTGTGAA
Found at i:698503 original size:32 final size:33
Alignment explanation
Indices: 698443--698508 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
698433 TTCAACGATT
698443 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
* * *
698476 TGTATTGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
698508 T
1 T
698509 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:698567 original size:13 final size:13
Alignment explanation
Indices: 698549--698573 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
698539 ATTACTCAAA
698549 TGTATCGATACAT
1 TGTATCGATACAT
698562 TGTATCGATACA
1 TGTATCGATACA
698574 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:698638 original size:52 final size:52
Alignment explanation
Indices: 698582--698706 Score: 232
Period size: 52 Copynumber: 2.4 Consensus size: 52
698572 CACTGATCTT
*
698582 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
698634 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
698686 TGTATCGATACATGCAGGCAA
1 TGTATCGATACATGCAGGCAA
698707 CTTTTCATAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:701976 original size:13 final size:13
Alignment explanation
Indices: 701954--701983 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
701944 TTTTTTTACG
701954 TATTTATATTTTT
1 TATTTATATTTTT
*
701967 TATTTGTATTTTT
1 TATTTATATTTTT
701980 TATT
1 TATT
701984 ATTTAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (13 bp):
TATTTATATTTTT
Found at i:703218 original size:170 final size:170
Alignment explanation
Indices: 702921--703244 Score: 488
Period size: 170 Copynumber: 1.9 Consensus size: 170
702911 TATATTTGTA
* * * *
702921 TCATGTCTCAATTTATAGTAAATTTTACATAATTTATCATAATGATAAATTTAAATTTTTTTTTG
1 TCATGTCTCAATTTATAATAAATTTTACATAATTTATCATAATAATAAATTTAAA-TATTTTTTA
* * *
702986 TGTTTGTATGATTTCATGTTATTTTTTATTTGTTCAAAATATTATAAATTTATATAAACTTTTAG
65 TGTTTGTACGATTTCATGTTATTATTTATTTGTTCAAAATATTATAAATTTATATAAACTTTTAA
703051 ATATTAATAATTCTTTTTATATATGTTTGCATCATGTCGTG
130 ATATTAATAATTCTTTTTATATATGTTTGCATCATGTCGTG
* *
703092 TCATGTCTCAATTTATAATATATTTTACATAATTTATCATAGTAATAAATTTATAA-ATTTTTTA
1 TCATGTCTCAATTTATAATAAATTTTACATAATTTATCATAATAATAAATTTA-AATATTTTTTA
* * ** *
703156 TGTTTGTGCGATTTCGTGTTATTATTTATTTGTTCAAGGTATTATAAATTTATATGAACTTTTAA
65 TGTTTGTACGATTTCATGTTATTATTTATTTGTTCAAAATATTATAAATTTATATAAACTTTTAA
*
703221 ATGTTAATAATTCTTTTTATATAT
130 ATATTAATAATTCTTTTTATATAT
703245 ATTTCGATAT
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
170 86 0.63
171 49 0.36
172 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.52
Consensus pattern (170 bp):
TCATGTCTCAATTTATAATAAATTTTACATAATTTATCATAATAATAAATTTAAATATTTTTTAT
GTTTGTACGATTTCATGTTATTATTTATTTGTTCAAAATATTATAAATTTATATAAACTTTTAAA
TATTAATAATTCTTTTTATATATGTTTGCATCATGTCGTG
Found at i:703478 original size:27 final size:25
Alignment explanation
Indices: 703447--703499 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 25
703437 ATTTAATACT
703447 ATTTAACTTAAAT-TTATATAATTATTA
1 ATTTAA-TTAAATATTATA-AA-TATTA
703474 ATTTAATTAAATATTATAAATATTA
1 ATTTAATTAAATATTATAAATATTA
703499 A
1 A
703500 AAACCTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 6 0.24
26 8 0.32
27 11 0.44
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTTAATTAAATATTATAAATATTA
Found at i:703618 original size:25 final size:25
Alignment explanation
Indices: 703571--703622 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
703561 TTTTTTACGT
703571 AAAATAAATTATTTTTAAGTATTTAA
1 AAAATAAATTATTTTTAAGTA-TTAA
*
703597 AAAAT-AATATATTTTTTA-TATTAA
1 AAAATAAAT-TATTTTTAAGTATTAA
703621 AA
1 AA
703623 TTTTAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 6 0.25
25 5 0.21
26 13 0.54
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
AAAATAAATTATTTTTAAGTATTAA
Found at i:704172 original size:19 final size:19
Alignment explanation
Indices: 704163--704200 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
704153 TATTTTGTTT
704163 AAAATAATTTATTCAATTA
1 AAAATAATTTATTCAATTA
704182 AAAATAATTTATT-AATTA
1 AAAATAATTTATTCAATTA
704200 A
1 A
704201 TAAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAATTTATTCAATTA
Found at i:704216 original size:22 final size:23
Alignment explanation
Indices: 704162--704216 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
704152 TTATTTTGTT
* *
704162 TAAAATAATTTATTCAATTAAAAA
1 TAAAAT-ATTAATTCAATAAAAAA
**
704186 TAATTTATTAATT-AATAAAAAA
1 TAAAATATTAATTCAATAAAAAA
704208 TAAAATATT
1 TAAAATATT
704217 TTATTTTTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 15 0.60
23 6 0.24
24 4 0.16
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAAATATTAATTCAATAAAAAA
Found at i:704398 original size:24 final size:24
Alignment explanation
Indices: 704332--704399 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
704322 ATCATTAATA
704332 AAAATAT-TTAATATT-TAATTTT
1 AAAATATATTAATATTATAATTTT
*
704354 -AAATATA-T--T-TTATAATCTT
1 AAAATATATTAATATTATAATTTT
704373 AAAATATATTAATATTATAATTTT
1 AAAATATATTAATATTATAATTTT
704397 AAA
1 AAA
704400 TATTTATGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
18 2 0.05
19 7 0.19
20 7 0.19
21 8 0.22
23 1 0.03
24 12 0.32
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (24 bp):
AAAATATATTAATATTATAATTTT
Found at i:704511 original size:15 final size:16
Alignment explanation
Indices: 704421--704504 Score: 55
Period size: 16 Copynumber: 4.8 Consensus size: 16
704411 TGAATTTTTT
704421 TAAACATATATATTTATAA
1 TAAA-ATAT-TATTT-TAA
*
704440 TATAATA-TATTTTAA
1 TAAAATATTATTTTAA
*
704455 T-AATTATTAATATAATTAA
1 TAAAATATT-AT-T--TTAA
704474 TAAAATTTATTATTTTAA
1 TAAAA--TATTATTTTAA
704492 TAAAATATTATTT
1 TAAAATATTATTT
704505 CATAAAAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 19
0.70 0.05 0.25
Matches are distributed among these distances:
14 3 0.06
15 5 0.09
16 15 0.28
17 1 0.02
18 12 0.23
19 8 0.15
20 3 0.06
21 2 0.04
22 4 0.08
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (16 bp):
TAAAATATTATTTTAA
Found at i:704677 original size:23 final size:23
Alignment explanation
Indices: 704652--704696 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
704642 TGATAAATGT
704652 TTTTAATA-TAAAAATATTAATA
1 TTTTAATAGTAAAAATATTAATA
*
704674 TTTTAATAGTAGAAATATTAATA
1 TTTTAATAGTAAAAATATTAATA
704697 GAAATAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (23 bp):
TTTTAATAGTAAAAATATTAATA
Found at i:704692 original size:17 final size:17
Alignment explanation
Indices: 704669--704713 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
704659 ATAAAAATAT
*
704669 TAATATTTTAATAGTAGA
1 TAATATTTTAATAG-AAA
704687 -AATA--TTAATAGAAA
1 TAATATTTTAATAGAAA
704701 TAATATTTTAATA
1 TAATATTTTAATA
704714 ATTATTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
17 10 0.43
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (17 bp):
TAATATTTTAATAGAAA
Found at i:704841 original size:21 final size:19
Alignment explanation
Indices: 704810--704855 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
704800 AATATTTTAG
704810 TATTAATTTTATTATTAAAA
1 TATTAATTTTA-TATTAAAA
704830 TATTATATTTTATATTAAAA
1 TATTA-ATTTTATATTAAAA
704850 -ATTAAT
1 TATTAAT
704856 AGTTTAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.08
19 4 0.16
20 13 0.52
21 6 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTAATTTTATATTAAAA
Found at i:704861 original size:20 final size:21
Alignment explanation
Indices: 704817--704861 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
704807 TAGTATTAAT
*
704817 TTTATTATTAAAATATTATAT
1 TTTATTATTAAAATATTATAG
704838 TTTA-TATTAAAA-ATTAATAG
1 TTTATTATTAAAATATT-ATAG
704858 TTTA
1 TTTA
704862 ATGATGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 15 0.68
21 4 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTATTATTAAAATATTATAG
Found at i:704988 original size:14 final size:14
Alignment explanation
Indices: 704969--705042 Score: 53
Period size: 14 Copynumber: 5.0 Consensus size: 14
704959 TCATAATTAT
704969 TATAATAATATTTA
1 TATAATAATATTTA
*
704983 TATAATTAATGTTTA
1 TATAA-TAATATTTA
704998 -ATAATCAATATTT-
1 TATAAT-AATATTTA
**
705011 TATTTTAAGTATTTAA
1 TATAATAA-TATTT-A
705027 TATTATATAATATTTA
1 TA-TA-ATAATATTTA
705043 GTATTAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
13 3 0.07
14 23 0.50
15 8 0.17
16 3 0.07
17 6 0.13
18 3 0.07
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (14 bp):
TATAATAATATTTA
Found at i:705042 original size:17 final size:17
Alignment explanation
Indices: 705020--705067 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
705010 TTATTTTAAG
705020 TATTTAATATTATATAA
1 TATTTAATATTATATAA
* * *
705037 TATTTAGTATTAAATAT
1 TATTTAATATTATATAA
*
705054 TATTAAAATATTAT
1 TATT-TAATATTAT
705068 TATTGGAGTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TATTTAATATTATATAA
Found at i:705052 original size:24 final size:25
Alignment explanation
Indices: 705018--705065 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
705008 TTTTATTTTA
* *
705018 AGTATTTAATATTA-TATAATATTT
1 AGTATTAAATATTATTAAAATATTT
705042 AGTATTAAATATTATTAAAATATT
1 AGTATTAAATATTATTAAAATATT
705066 ATTATTGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
AGTATTAAATATTATTAAAATATTT
Found at i:705114 original size:15 final size:16
Alignment explanation
Indices: 705094--705123 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
705084 AGTAAATATT
705094 AATA-TTTTAATAATA
1 AATATTTTTAATAATA
705109 AATATTTTTAATAAT
1 AATATTTTTAATAAT
705124 TAACAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATATTTTTAATAATA
Found at i:713119 original size:16 final size:16
Alignment explanation
Indices: 713088--713143 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
713078 TGGTTGGTTT
* *
713088 AATTATTTTGAGTTTG
1 AATTATTTTAAATTTG
*
713104 AATCATTTTAAATTTG
1 AATTATTTTAAATTTG
*
713120 AATTATTTTAGATTTG
1 AATTATTTTAAATTTG
713136 AATTATTT
1 AATTATTT
713144 GGAGCTTGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (16 bp):
AATTATTTTAAATTTG
Found at i:713882 original size:38 final size:38
Alignment explanation
Indices: 713808--713881 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 38
713798 AGAACGAGAT
* * *
713808 AATGGGATAATATCTCATAAAAAATTGAAAAAAAAAAG
1 AATGAGATAATATCCCATAAAAAATTAAAAAAAAAAAG
*
713846 AATGAGATAGTATCCCAT-AAAAATTAAAAAAAAAAA
1 AATGAGATAATATCCCATAAAAAATTAAAAAAAAAAA
713882 AAAGAGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.62, C:0.07, G:0.11, T:0.20
Consensus pattern (38 bp):
AATGAGATAATATCCCATAAAAAATTAAAAAAAAAAAG
Found at i:721669 original size:34 final size:34
Alignment explanation
Indices: 721614--721830 Score: 276
Period size: 34 Copynumber: 6.4 Consensus size: 34
721604 ATCTCATTAC
*
721614 TGTTGATTAAAT-GGTGATTTGGTAGTTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
721647 TGTTGATTAAATGGGTGATTTGGTGGTTTGCCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
721681 TGTTGACTAAATGAGAGATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* **
721715 TGTTGATTAAATGAGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* *
721749 TATTGATTAAATGGGTGATTTGGTGGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
721783 TGTTGACTAAAT-GGTAGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGGT-GATTTGGTAGCTTACCAT
721817 TGTTGATTAAATGG
1 TGTTGATTAAATGG
721831 TGGTTTTTAC
Statistics
Matches: 160, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
33 15 0.09
34 144 0.90
35 1 0.01
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (34 bp):
TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
Found at i:721760 original size:102 final size:101
Alignment explanation
Indices: 721614--721830 Score: 337
Period size: 102 Copynumber: 2.1 Consensus size: 101
721604 ATCTCATTAC
** * * * *
721614 TGTTGATTAAATGGTGATTTGGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTGCC
1 TGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTACC
721679 ATTGTTGACTAAATGAG-AGATTTGGTAGCTTACCAT
66 ATTGTTGACTAAATG-GTAGATTTGGTAGCTTACCAT
721715 TGTTGATTAAATGAGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTAC
1 TGTTGATTAAATG-GAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTAC
* *
721780 CATTGTTGACTAAATGGTAGATTTGGTAGGTTGCCAT
65 CATTGTTGACTAAATGGTAGATTTGGTAGCTTACCAT
721817 TGTTGATTAAATGG
1 TGTTGATTAAATGG
721831 TGGTTTTTAC
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
101 15 0.14
102 91 0.86
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (101 bp):
TGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTACC
ATTGTTGACTAAATGGTAGATTTGGTAGCTTACCAT
Found at i:726298 original size:34 final size:34
Alignment explanation
Indices: 726241--726459 Score: 262
Period size: 34 Copynumber: 6.5 Consensus size: 34
726231 AAGTGGGAGA
*
726241 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
726274 ATTGTTGATTAAATGGGTGATTTGGTGGTTTGCC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* *
726308 ATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* **
726342 ATTGTTGATTAAATGAGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
726376 AGTATTGATTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * * * *
726410 ATTGTTGACTAAAT-GGTATATTTTGTAGGTTGCC
1 ATTGTTGATTAAATGGGT-GATTTGGTAGCTTACC
726444 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
726460 TGGTTTTTAC
Statistics
Matches: 158, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.11
34 140 0.89
35 1 0.01
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
Found at i:726416 original size:102 final size:101
Alignment explanation
Indices: 726241--726459 Score: 321
Period size: 102 Copynumber: 2.2 Consensus size: 101
726231 AAGTGGGAGA
** * * * * *
726241 ATTGTTGATTAAATGGTGATTTGGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTG
1 ATTGTTGATTAAATGGAAATTTGGTAGCTTACCAGTATTGATTAAATGGGTGATTTGGTGGCTTA
726306 CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
66 CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
726342 ATTGTTGATTAAATGAGAAATTTGGTAGCTTACCAGTATTGATTAAATGGGTGATTTGGTGGCTT
1 ATTGTTGATTAAATG-GAAATTTGGTAGCTTACCAGTATTGATTAAATGGGTGATTTGGTGGCTT
* * * * *
726407 ACCATTGTTGACTAAATGGTATATTTTGTAGGTTGCC
65 ACCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
726444 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
726460 TGGTTTTTAC
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 16 0.15
102 89 0.85
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (101 bp):
ATTGTTGATTAAATGGAAATTTGGTAGCTTACCAGTATTGATTAAATGGGTGATTTGGTGGCTTA
CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
Found at i:727502 original size:58 final size:59
Alignment explanation
Indices: 727389--727506 Score: 211
Period size: 58 Copynumber: 2.0 Consensus size: 59
727379 AGTATTCCAC
727389 TTAAGTAAATAACCTTAGTTTGGGAAAAAAAACTCCCACAGGTAATGCATGCAATATAA
1 TTAAGTAAATAACCTTAGTTTGGGAAAAAAAACTCCCACAGGTAATGCATGCAATATAA
* *
727448 TTAAGTAAATAACCTTATTTTGGG-AAAAAAACTCCCACATGTAATGCATGCAATATAA
1 TTAAGTAAATAACCTTAGTTTGGGAAAAAAAACTCCCACAGGTAATGCATGCAATATAA
727506 T
1 T
727507 CACTAACATA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 34 0.60
59 23 0.40
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (59 bp):
TTAAGTAAATAACCTTAGTTTGGGAAAAAAAACTCCCACAGGTAATGCATGCAATATAA
Found at i:727521 original size:2 final size:2
Alignment explanation
Indices: 727514--727543 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
727504 AATCACTAAC
*
727514 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
727544 GGAAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:731613 original size:75 final size:75
Alignment explanation
Indices: 731522--731670 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
731512 CCGTAGGAAG
* *
731522 TACATTGTTAAAATTTGGATCAGAATCATTCTTTAG-CTTGCATACTTAATTGTCGATTGGATAG
1 TACATTATTAAAATTTGGATCAAAATCATTCTTT-GTCTTGCATACTTAATTGTCGATTGGATAG
731586 CAACTGCTGCA
65 CAACTGCTGCA
731597 TACATTATTAAAATTTGGATCAAAATCATTCTTTGTCTTGCATACTTAATTGTCGATTGGATAGC
1 TACATTATTAAAATTTGGATCAAAATCATTCTTTGTCTTGCATACTTAATTGTCGATTGGATAGC
731662 AACTGCTGC
66 AACTGCTGC
731671 CCTTGGCAAG
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
74 1 0.01
75 70 0.99
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (75 bp):
TACATTATTAAAATTTGGATCAAAATCATTCTTTGTCTTGCATACTTAATTGTCGATTGGATAGC
AACTGCTGCA
Found at i:734071 original size:6 final size:6
Alignment explanation
Indices: 734060--734100 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
734050 TATTTTTTTT
* *
734060 CATATA CATATA CATATA CATATA CATATA TATATA TATAT
1 CATATA CATATA CATATA CATATA CATATA CATATA CATAT
734101 GTAATATTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (6 bp):
CATATA
Found at i:734210 original size:19 final size:21
Alignment explanation
Indices: 734174--734213 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
734164 TTATGTGATT
*
734174 TATTTTTCCTAATATTTATTA
1 TATTTTTCATAATATTTATTA
734195 TATTTTTCAT-AT-TTTATTA
1 TATTTTTCATAATATTTATTA
734214 ACACATTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 2 0.11
21 9 0.50
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTTTTCATAATATTTATTA
Found at i:737744 original size:28 final size:27
Alignment explanation
Indices: 737713--737766 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
737703 ATGTAATCCA
737713 TAATTTTTAAAAAATAAAATCAAAATCT
1 TAATTTTTAAAAAA-AAAATCAAAATCT
***
737741 TAATTTTTTTTAAAAAAATCAAAATC
1 TAATTTTTAAAAAAAAAATCAAAATC
737767 AATTTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (27 bp):
TAATTTTTAAAAAAAAAATCAAAATCT
Found at i:737779 original size:27 final size:26
Alignment explanation
Indices: 737728--737782 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 26
737718 TTTAAAAAAT
*
737728 AAAATCAAAATCTTAATTTTTTTTAAA
1 AAAATCAAAATC-TAATTTTATTTAAA
737755 AAAATCAAAATC-AATTTTAAATTTAAA
1 AAAATCAAAATCTAATTTT--ATTTAAA
737782 A
1 A
737783 TCAAAACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 6 0.24
27 19 0.76
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAATCAAAATCTAATTTTATTTAAA
Found at i:737877 original size:13 final size:14
Alignment explanation
Indices: 737851--737886 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
737841 TAAAATTAGG
737851 AAATCTTTTAAAAA
1 AAATCTTTTAAAAA
*
737865 AAATTTTTTAAAAA
1 AAATCTTTTAAAAA
737879 AATATCTT
1 AA-ATCTT
737887 ATCTAGACAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
AAATCTTTTAAAAA
Found at i:741099 original size:20 final size:20
Alignment explanation
Indices: 741076--741114 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
741066 GATATACATT
741076 ATACTAATAT-TATATATGTA
1 ATACTAATATCT-TATATGTA
*
741096 ATACTATTATCTTATATGT
1 ATACTAATATCTTATATGT
741115 TAATCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (20 bp):
ATACTAATATCTTATATGTA
Found at i:741743 original size:18 final size:19
Alignment explanation
Indices: 741710--741748 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
741700 TTTTTAACAA
*
741710 AAAAAATCTAAATTTTGTT
1 AAAAAATCTAAATTTTATT
*
741729 AAAAAAT-TAATTTTTATT
1 AAAAAATCTAAATTTTATT
741747 AA
1 AA
741749 TATAATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
AAAAAATCTAAATTTTATT
Found at i:742999 original size:28 final size:29
Alignment explanation
Indices: 742946--743000 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
742936 AATTTTTATG
*
742946 TTTTTATTAAATTTATATATTGATATTAA
1 TTTTTATTAAATTTATATATTAATATTAA
*
742975 TTTTTATT-AA-TTATAATGTTAATATT
1 TTTTTATTAAATTTAT-ATATTAATATT
743001 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.17
28 11 0.48
29 8 0.35
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (29 bp):
TTTTTATTAAATTTATATATTAATATTAA
Found at i:746815 original size:16 final size:16
Alignment explanation
Indices: 746794--746824 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
746784 AAATATCTAG
746794 AAAATCAAGAAATTTC
1 AAAATCAAGAAATTTC
*
746810 AAAATCAATAAATTT
1 AAAATCAAGAAATTT
746825 ACAGATTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAATCAAGAAATTTC
Found at i:755685 original size:13 final size:13
Alignment explanation
Indices: 755650--755690 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
755640 TTTTGAAAAA
*
755650 TATTCGAATACTTG
1 TATT-GAATATTTG
755664 TATTTGAATATTTG
1 TA-TTGAATATTTG
755678 TATTGAATATTTG
1 TATTGAATATTTG
755691 AATGTCTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 11 0.44
14 12 0.48
15 2 0.08
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (13 bp):
TATTGAATATTTG
Found at i:756045 original size:4 final size:4
Alignment explanation
Indices: 756036--756066 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
756026 GCCATGTTGT
756036 TTTA TTTA TTTA TTTA TTTA TTTAA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTT-A TTTA TT
756067 AATTATTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:756197 original size:16 final size:15
Alignment explanation
Indices: 756176--756267 Score: 62
Period size: 16 Copynumber: 5.7 Consensus size: 15
756166 TTCTTATCAT
756176 TTATTTTTATTGTAA
1 TTATTTTTATTGTAA
* *
756191 TTCATTTTTTTGTTGTTA
1 TT-A--TTTTTATTGTAA
*
756209 TATATTTTTATTG-CA
1 T-TATTTTTATTGTAA
*
756224 TT-TTTTTGTTGTTATA
1 TTATTTTTATTG-TA-A
756240 TTTATTTTTATTGTAA
1 -TTATTTTTATTGTAA
756256 TTTATTTTTATT
1 -TTATTTTTATT
756268 ATATTTTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
13 8 0.13
14 1 0.02
15 4 0.07
16 23 0.38
17 4 0.07
18 20 0.33
19 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.71
Consensus pattern (15 bp):
TTATTTTTATTGTAA
Found at i:756246 original size:31 final size:31
Alignment explanation
Indices: 756176--756252 Score: 106
Period size: 29 Copynumber: 2.6 Consensus size: 31
756166 TTCTTATCAT
* * *
756176 TTATTTTTATTGTAATT-CATTTTTTTGTTG
1 TTATATTTATTTTTATTGCATTTTTTTGTTG
756206 TTATA--TATTTTTATTGCATTTTTTTGTTG
1 TTATATTTATTTTTATTGCATTTTTTTGTTG
756235 TTATATTTATTTTTATTG
1 TTATATTTATTTTTATTG
756253 TAATTTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 8 0.20
29 18 0.44
30 4 0.10
31 11 0.27
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.70
Consensus pattern (31 bp):
TTATATTTATTTTTATTGCATTTTTTTGTTG
Found at i:756570 original size:22 final size:23
Alignment explanation
Indices: 756525--756567 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
756515 GATTAGCTCG
756525 AAAATAATTATTATTTAATTAAT
1 AAAATAATTATTATTTAATTAAT
*
756548 AAAA-AATTATT-TTTATTTAA
1 AAAATAATTATTATTTAATTAA
756568 ATATTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AAAATAATTATTATTTAATTAAT
Found at i:763394 original size:3 final size:3
Alignment explanation
Indices: 763369--763434 Score: 51
Period size: 3 Copynumber: 20.3 Consensus size: 3
763359 GACCCATTTG
* * *
763369 TAT TAT TGATT TAT TTT TGT TAT TAT CTAT CTAT TTT TATT TAT TAT
1 TAT TAT T-A-T TAT TAT TAT TAT TAT -TAT -TAT TAT TA-T TAT TAT
*
763416 TGT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
763435 TGCTCTGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
3 38 0.73
4 12 0.23
5 2 0.04
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:764628 original size:14 final size:14
Alignment explanation
Indices: 764595--764621 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
764585 AGGATCGTTA
764595 GTATAATATTACTC
1 GTATAATATTACTC
764609 GTATAATATTACT
1 GTATAATATTACT
764622 TTAATAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (14 bp):
GTATAATATTACTC
Found at i:766020 original size:13 final size:13
Alignment explanation
Indices: 765986--766024 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
765976 TAAATATGTT
*
765986 ATTTAAAAATAAA
1 ATTTAAATATAAA
*
765999 A-TAAAATATAAA
1 ATTTAAATATAAA
766011 ATTTAAATATAAA
1 ATTTAAATATAAA
766024 A
1 A
766025 AAATTAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATTTAAATATAAA
Found at i:766930 original size:21 final size:23
Alignment explanation
Indices: 766887--766933 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
766877 TAATTTTTTA
*
766887 AAAAATATTTTTATATAATATTT
1 AAAAATATTTTTACATAATATTT
*
766910 AAAAAT-TTTTTACATTA-ATTT
1 AAAAATATTTTTACATAATATTT
766931 AAA
1 AAA
766934 TTAAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 9 0.41
23 6 0.27
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
AAAAATATTTTTACATAATATTT
Found at i:767052 original size:5 final size:5
Alignment explanation
Indices: 767042--767097 Score: 60
Period size: 5 Copynumber: 10.8 Consensus size: 5
767032 TTTTGAATAA
* *
767042 AAATT AAATT AAATT AAA-T ATATA AAATT AATATCT AAATT AAAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT AA-AT-T AAATT -AAATT
767089 AAATT AAAT
1 AAATT AAAT
767098 ATTATAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 3 0.07
5 28 0.65
6 9 0.21
7 3 0.07
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:767067 original size:18 final size:18
Alignment explanation
Indices: 767046--767105 Score: 70
Period size: 18 Copynumber: 3.2 Consensus size: 18
767036 GAATAAAAAT
767046 TAAATTAAATTAAATATA
1 TAAATTAAATTAAATATA
767064 TAAAATTAATATCTAAAT-TA
1 T-AAATTAA-AT-TAAATATA
767084 -AAATTAAATTAAATATTA
1 TAAATTAAATTAAATA-TA
767102 TAAA
1 TAAA
767106 ATTTGAATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
16 5 0.14
17 2 0.06
18 10 0.28
19 10 0.28
20 4 0.11
21 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAATTAAATTAAATATA
Found at i:767120 original size:38 final size:37
Alignment explanation
Indices: 767033--767124 Score: 118
Period size: 38 Copynumber: 2.5 Consensus size: 37
767023 TTTTTTAATT
*
767033 TTTGAATAAAAATT-AAATTAAATTAAATATATAAAA
1 TTTGAATTAAAATTAAAATTAAATTAAATATATAAAA
*
767069 -TT-AATATCTAAATTAAAATTAAATTAAATATTATAAAA
1 TTTGAAT-T-AAAATTAAAATTAAATTAAATA-TATAAAA
767107 TTTGAATTAAAATTAAAA
1 TTTGAATTAAAATTAAAA
767125 CGAATATTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
34 3 0.06
35 2 0.04
36 5 0.11
37 15 0.32
38 16 0.34
39 3 0.06
40 3 0.06
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (37 bp):
TTTGAATTAAAATTAAAATTAAATTAAATATATAAAA
Found at i:769471 original size:20 final size:20
Alignment explanation
Indices: 769429--769473 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
769419 ACACTTTTAA
*
769429 TATTTTTTAAAATTTACATT
1 TATTTTTTAAAATTTACACT
**
769449 TATTTTTTAAAATTTTTACT
1 TATTTTTTAAAATTTACACT
769469 TATTT
1 TATTT
769474 ATCATTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTTTAAAATTTACACT
Found at i:769835 original size:19 final size:19
Alignment explanation
Indices: 769790--769836 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
769780 TTTAATTTTA
* * *
769790 TTAAATAGTGATTATTTAT
1 TTAAATATTTATTATATAT
769809 TTAAATATTTATTATATAT
1 TTAAATATTTATTATATAT
*
769828 TTATATATT
1 TTAAATATT
769837 AAAATAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
TTAAATATTTATTATATAT
Found at i:769836 original size:27 final size:26
Alignment explanation
Indices: 769801--769852 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
769791 TAAATAGTGA
* * *
769801 TTATTTATTTAAATATTTATTATATAT
1 TTATATATTAAAATAATTA-TATATAT
769828 TTATATATTAAAATAATTATATATA
1 TTATATATTAAAATAATTATATATA
769853 GATTTTAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TTATATATTAAAATAATTATATATAT
Found at i:770081 original size:15 final size:14
Alignment explanation
Indices: 770046--770074 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
770036 TTATTTTTTA
770046 AAAAATAAAAATAT
1 AAAAATAAAAATAT
770060 AAAAATAAAAA-AT
1 AAAAATAAAAATAT
770073 AA
1 AA
770075 TTAAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAAAATAT
Found at i:770649 original size:15 final size:14
Alignment explanation
Indices: 770597--770640 Score: 79
Period size: 14 Copynumber: 3.1 Consensus size: 14
770587 TTAAATTATT
770597 TTTAAAAAATTAAA
1 TTTAAAAAATTAAA
770611 TTTAAAAAATTAAA
1 TTTAAAAAATTAAA
770625 TTTAAAAAATTCAAA
1 TTTAAAAAATT-AAA
770640 T
1 T
770641 ATAGAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 25 0.86
15 4 0.14
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (14 bp):
TTTAAAAAATTAAA
Found at i:770659 original size:29 final size:28
Alignment explanation
Indices: 770599--770659 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
770589 AAATTATTTT
* * **
770599 TAAAAAATTAAATTTAAAAAATTAAATT
1 TAAAAAATTAAATATAAAAAATAAAAAA
*
770627 TAAAAAATTCAAATATAGAAAATAAAAAA
1 TAAAAAATT-AAATATAAAAAATAAAAAA
770656 TAAA
1 TAAA
770660 TTTTAATTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (28 bp):
TAAAAAATTAAATATAAAAAATAAAAAA
Found at i:771981 original size:30 final size:30
Alignment explanation
Indices: 771945--772004 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
771935 ATTTCACTGC
*
771945 CTATAGACAAATAAATATGTTTAAAGGGTG
1 CTATAGACAAATAAATATATTTAAAGGGTG
771975 CTATAGACAAATAAATATATTTAAAGGGTG
1 CTATAGACAAATAAATATATTTAAAGGGTG
772005 TTTTCTCTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.07, G:0.18, T:0.30
Consensus pattern (30 bp):
CTATAGACAAATAAATATATTTAAAGGGTG
Found at i:773025 original size:17 final size:17
Alignment explanation
Indices: 773003--773072 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 17
772993 AATTTTAGAA
773003 TATATTTTTAATTATAT
1 TATATTTTTAATTATAT
773020 TATA---TTAATTATAAT
1 TATATTTTTAATTAT-AT
** *
773035 TATAAATATAA-TATA-
1 TATATTTTTAATTATAT
*
773050 CATATTTTTAATTATAT
1 TATATTTTTAATTATAT
*
773067 CATATT
1 TATATT
773073 ACTTACTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
14 8 0.19
15 13 0.31
16 5 0.12
17 13 0.31
18 3 0.07
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATTTTTAATTATAT
Found at i:773027 original size:14 final size:15
Alignment explanation
Indices: 773010--773038 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
773000 GAATATATTT
773010 TTAATTAT-ATTATA
1 TTAATTATAATTATA
773024 TTAATTATAATTATA
1 TTAATTATAATTATA
773039 AATATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTAATTATAATTATA
Found at i:773111 original size:47 final size:47
Alignment explanation
Indices: 773004--773111 Score: 130
Period size: 47 Copynumber: 2.3 Consensus size: 47
772994 ATTTTAGAAT
* * *
773004 ATATTTTTAATTATATTATATTAATTATAATTATAAATATAATATAC
1 ATATTATTAATTATATCATATTAATTATAATTATAAATATAATAGAC
* * *
773051 ATATTTTTAATTATATCATATTACTTACT-ATTATAAATATAATAGAT
1 ATATTATTAATTATATCATATTAATTA-TAATTATAAATATAATAGAC
773098 ATTATTATT-ATTAT
1 A-TATTATTAATTAT
773112 TACAGTTATC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
47 47 0.87
48 7 0.13
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.52
Consensus pattern (47 bp):
ATATTATTAATTATATCATATTAATTATAATTATAAATATAATAGAC
Found at i:773573 original size:22 final size:22
Alignment explanation
Indices: 773534--773588 Score: 94
Period size: 23 Copynumber: 2.5 Consensus size: 22
773524 AATAAAAAAA
773534 TATTTATAAAAACTTTTTTAAT
1 TATTTATAAAAACTTTTTTAAT
773556 TAATTTATAAAAACTTTTTTAAT
1 T-ATTTATAAAAACTTTTTTAAT
773579 TATTTA-AAAA
1 TATTTATAAAA
773589 TAAAAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.12
22 6 0.19
23 22 0.69
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTTATAAAAACTTTTTTAAT
Found at i:773941 original size:23 final size:22
Alignment explanation
Indices: 773913--773972 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
773903 TGAATAATAA
773913 TAATTTTTTTAATTCT-TTAAATG
1 TAATTTTTTTAATT-TGTT-AATG
*
773936 TTATTTTTTTAATTTGTTAATG
1 TAATTTTTTTAATTTGTTAATG
*
773958 TAAATTTTTTAATTT
1 TAATTTTTTTAATTT
773973 AATTAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 18 0.55
23 15 0.45
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (22 bp):
TAATTTTTTTAATTTGTTAATG
Found at i:774023 original size:33 final size:34
Alignment explanation
Indices: 773976--774043 Score: 95
Period size: 33 Copynumber: 2.0 Consensus size: 34
773966 TTAATTTAAT
* *
773976 TAAATATATTTTTTAT-TTTATTAAAAATA-ATAA
1 TAAAAATACTTTTTATTTTTA-TAAAAATATATAA
774009 TAAAAATACTTTTTATTTTTATAAAAATATATAA
1 TAAAAATACTTTTTATTTTTATAAAAATATATAA
774043 T
1 T
774044 TAATATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
33 22 0.71
34 9 0.29
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (34 bp):
TAAAAATACTTTTTATTTTTATAAAAATATATAA
Done.