Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold368
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 190673
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:4342 original size:22 final size:23
Alignment explanation
Indices: 4298--4342 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
4288 ATATTCATGG
*
4298 CATTCATTCAACATTTTCATAAT
1 CATTCATTCAACATTTGCATAAT
* *
4321 CATTCA-TCAATATTTGCTTAAT
1 CATTCATTCAACATTTGCATAAT
4343 TACTAAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.44
Consensus pattern (23 bp):
CATTCATTCAACATTTGCATAAT
Found at i:10804 original size:13 final size:13
Alignment explanation
Indices: 10786--10810 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10776 CATAAAATGT
10786 TGTATCGATACAA
1 TGTATCGATACAA
10799 TGTATCGATACA
1 TGTATCGATACA
10811 TCTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:10891 original size:13 final size:13
Alignment explanation
Indices: 10873--10900 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10863 ATTACTCAAA
10873 TGTATCGATACAT
1 TGTATCGATACAT
10886 TGTATCGATACAT
1 TGTATCGATACAT
10899 TG
1 TG
10901 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:10950 original size:52 final size:52
Alignment explanation
Indices: 10906--11030 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 52
10896 CATTGATCTT
10906 TGTATCGATACATGCAGGCAAATTCGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTCGCCCAGATGTATCGATACATTATAAAA
* * ** *
10958 TGTATCGATACATGCAGGTAAATTTGCCCAGATGTATCGATACCCTATTAAA
1 TGTATCGATACATGCAGGCAAATTCGCCCAGATGTATCGATACATTATAAAA
*
11010 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
11031 CTTTTCATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTCGCCCAGATGTATCGATACATTATAAAA
Found at i:16367 original size:128 final size:128
Alignment explanation
Indices: 16139--16786 Score: 503
Period size: 128 Copynumber: 5.1 Consensus size: 128
16129 CATTAAACTT
* * * * * * * *
16139 TTGGAGACTTTTCTACCCTTTAGTCTGCCTATCTA-CTTTGACCCTAGAGAGTTTC-CTATCCTT
1 TTGGAGACTTTCCTACCCTTTAGTTTGCCTGTC-AGCTTTGACCTTGGAGACTGTCTC-AT-CTA
* * *
16202 TAGTCTGCCTGTCGGCTTTGACCCTGGAGACTGCCTCATC-TAAAGTTTGCCTGTCAGCTTTGAC
63 AAGTCTGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTTAAAGTCTGCCTGTCAGCTTTGAC
16266 C
128 C
* * * * * **
16267 TTGGAGACTTTCCTACCTTTTAGTCTGCTTGTCAGCTTTGACCTTGGAGACTTTCTTATCCTTCA
1 TTGGAGACTTTCCTACCCTTTAGTTTGCCTGTCAGCTTTGACCTTGGAGACTGTCTCAT-CTAAA
* ** * * *
16332 GTCTGCCTGTCAGCTTTGACCCTAGAGACTGCCTCATC-TAAAGTCTGCCCATCGGTTTTAACC
65 GTCTGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTTAAAGTCTGCCTGTCAGCTTTGACC
* *
16395 TTGGAGACTTTCCTACCCTTT-GTTTGCCTAT-TGACTTTGACCTTGGAGACTGTCTCATCTAAA
1 TTGGAGACTTTCCTACCCTTTAGTTTGCCTGTCAG-CTTTGACCTTGGAGACTGTCTCATCTAAA
* * * * * ** *
16458 GTCTGCCTATC-GATTTTGACCTTGAAGACTTTCCT-ATCTTTTAGTCTGCCTGT-TGACTTTGA
65 GTCTGCCTGTCAG-CTTTGACCCTGGAGAC-TGCCTCATCTTAAAGTCTGCCTGTCAG-CTTTGA
16520 CC
127 CC
* * * * * *
16522 TTGGAGACTTTCCTATCATTCAGTTTGCCTGTCAGTTTTCACCTTGGAGACTGCCTCATCTAAAG
1 TTGGAGACTTTCCTACCCTTTAGTTTGCCTGTCAGCTTTGACCTTGGAGACTGTCTCATCTAAAG
* * * *** * * *
16587 TTTGCCTGTCAGTTTTGACCTTGGAGACTTTTTTACCCTTTAA-TCTGCCTGTCAGCTTTGACC
66 TCTGCCTGTCAGCTTTGACCCTGGAGACTGCCTCA-TCTTAAAGTCTGCCTGTCAGCTTTGACC
* * * * * * * *
16650 TTGAAGACTTTTCTATCCTTCAGTTTGCCTGTCGGCTTTGACCCTGGAGACT-ACTTTATCTAAA
1 TTGGAGACTTTCCTACCCTTTAGTTTGCCTGTCAGCTTTGACCTTGGAGACTGTC-TCATCTAAA
* * * * * * * * *
16714 GTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCT-ACCCTT-CAGTCTGCTTGCCGGCTTTGAC
65 GTCTGCCTGTCAGCTTTGACCCTGGAGAC-TGCCTCA-TCTTAAAGTCTGCCTGTCAGCTTTGAC
16777 C
128 C
16778 TTGGAGACT
1 TTGGAGACT
16787 GCCTCATCTA
Statistics
Matches: 429, Mismatches: 75, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
125 1 0.00
126 30 0.07
127 73 0.17
128 314 0.73
129 11 0.03
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (128 bp):
TTGGAGACTTTCCTACCCTTTAGTTTGCCTGTCAGCTTTGACCTTGGAGACTGTCTCATCTAAAG
TCTGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTTAAAGTCTGCCTGTCAGCTTTGACC
Found at i:16452 original size:84 final size:85
Alignment explanation
Indices: 16307--16530 Score: 272
Period size: 84 Copynumber: 2.6 Consensus size: 85
16297 GTCAGCTTTG
* * * * * * * *
16307 ACCTTGGAGACTTTCTTATCCTTCAGTCTGCCT-GTCAGCTTTGACCCTAGAGACTGCCTCATCT
1 ACCTTGAAGACTTTCCTACCCTTTAGTCTGCCTATTGA-CTTTGACCTTGGAGACTGCCTCATCT
*
16371 AAAGTCTGCCCATCGGTTTTA
65 AAAGTCTGCCCATCGATTTTA
* * *
16392 ACCTTGGAGACTTTCCTACCCTTT-GTTTGCCTATTGACTTTGACCTTGGAGACTGTCTCATCTA
1 ACCTTGAAGACTTTCCTACCCTTTAGTCTGCCTATTGACTTTGACCTTGGAGACTGCCTCATCTA
* *
16456 AAGTCTGCCTATCGATTTTG
66 AAGTCTGCCCATCGATTTTA
* * *
16476 ACCTTGAAGACTTTCCTATCTTTTAGTCTGCCTGTTGACTTTGACCTTGGAGACT
1 ACCTTGAAGACTTTCCTACCCTTTAGTCTGCCTATTGACTTTGACCTTGGAGACT
16531 TTCCTATCAT
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
84 69 0.57
85 51 0.43
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (85 bp):
ACCTTGAAGACTTTCCTACCCTTTAGTCTGCCTATTGACTTTGACCTTGGAGACTGCCTCATCTA
AAGTCTGCCCATCGATTTTA
Found at i:16866 original size:41 final size:41
Alignment explanation
Indices: 16679--17083 Score: 190
Period size: 42 Copynumber: 9.5 Consensus size: 41
16669 TCAGTTTGCC
* * * *
16679 TGTCGGCTTTGACCCTGGAGACTACTTTATCTAAAGTCTGCT
1 TGTC-GCTTTGACCATGGAGACTACCTCATCTAAAGTCTACT
* * * ** *
16721 TGTCGGCTTTGACCTTGGAGACTTTCCT-ACCCTTCAGTCTGCT
1 TGTC-GCTTTGACCATGGAGAC-TACCTCA-TCTAAAGTCTACT
* * *
16764 TGCCGGCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTACT
1 TGTC-GCTTTGACCATGGAGACTACCTCATCTAAAGTCTACT
*
16806 TGTCGACTTTGACCCTGGAGACTACCTCATCTAAAGTCTA-T
1 TGTCG-CTTTGACCATGGAGACTACCTCATCTAAAGTCTACT
* ** ** *
16847 TGTCAGCTTTGATCATGGAGACT-TTTCTATCCTTCAGTCTGCT
1 TGTC-GCTTTGACCATGGAGACTACCTC-AT-CTAAAGTCTACT
* * * * * *
16890 CTATCGACTTTGATCTTGGAGATTACCTCATCTAAAGTTTACC
1 -TGTCG-CTTTGACCATGGAGACTACCTCATCTAAAGTCTACT
* * * ** * ** * *
16933 TATCGACTTTGACCTTAGAGACT-TTTCTACCCTTTAGTCTGCC
1 TGTCG-CTTTGACCATGGAGACTACCTC-A-TCTAAAGTCTACT
* * **
16976 TGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCTTCAGTCTACT
1 TGTC-GCTTTGACCATGGAGAC-TACCTCAT-CTAAAGTCTACT
* * * **
17019 TGTCGGCTTTGACCTTGGAGACTGCCTTATCTAAAGTCTGTT
1 TGTC-GCTTTGACCATGGAGACTACCTCATCTAAAGTCTACT
*
17061 TGTCGGCTTTGACCCTGGAGACT
1 TGTC-GCTTTGACCATGGAGACT
17084 TTCCTATCTT
Statistics
Matches: 289, Mismatches: 56, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
40 2 0.01
41 25 0.09
42 133 0.46
43 104 0.36
44 22 0.08
45 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.37
Consensus pattern (41 bp):
TGTCGCTTTGACCATGGAGACTACCTCATCTAAAGTCTACT
Found at i:16910 original size:340 final size:340
Alignment explanation
Indices: 16173--17126 Score: 1166
Period size: 340 Copynumber: 2.8 Consensus size: 340
16163 CTGCCTATCT
* * * * * *
16173 ACTTTGACCCTAGAGAGTTTCCTATCCTTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTGCCT
1 ACTTTGACCATGGAGACTTTCCTATCCTTCAGTCTGCCTGTCGACTTTGACCTTGGAGACTGCCT
* * *
16238 CATCTAAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTTCCTACCTTTTAGTCTGCTTGTCAGC
66 CATCTAAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTTTCTACCCTTTAGTCTGCCTGTCAGC
* * *
16303 TTTGACCTTGGAGAC-TTTCTTATCCTTCAGTCTGCCTGTCAGCTTTGACCCTAGAGACTGCCTC
131 TTTGACCTTGGAGACTTTTC-TATCCTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACTGCCTT
*** * * * * * *
16367 ATCTAAAGTCTGCCCATCGGTTTTAACCTTGGAGACTTTCCTACCCTTTGTTTGCCTATTGACTT
195 ATCTAAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTACCCTTAGTCTGCCTATCGGCTT
* * * * *
16432 TGACCTTGGAGACTGTCTCATCTAAAGTCTGCCTATCGATTTTGACCTTGAAGACTTTCCTATCT
260 TGACCTTGGAGACTGCCTCATCTAAAGTCTACCTATCGACTTTGACCCTGAAGACTTACCTATCT
** * *
16497 TTTAGTCTGCCTGTTG
325 TAAAGTCTGACTGTAG
* * * * *
16513 ACTTTGACCTTGGAGACTTTCCTATCATTCAGTTTGCCTGTC-AGTTTTCACCTTGGAGACTGCC
1 ACTTTGACCATGGAGACTTTCCTATCCTTCAGTCTGCCTGTCGA-CTTTGACCTTGGAGACTGCC
* * *
16577 TCATCTAAAGTTTGCCTGTCAGTTTTGACCTTGGAGACTTTTTTACCCTTTAATCTGCCTGTCAG
65 TCATCTAAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTTTCTACCCTTTAGTCTGCCTGTCAG
* * * *
16642 CTTTGACCTTGAAGACTTTTCTATCCTTCAGTTTGCCTGTCGGCTTTGACCCTGGAGACTACTTT
130 CTTTGACCTTGGAGACTTTTCTATCCTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACTGCCTT
* **
16707 ATCTAAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTACCCTTCAGTCTGCTTGCCGGCT
195 ATCTAAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTACCCTT-AGTCTGCCTATCGGCT
* * *
16772 TTGACCTTGGAGACTGCCTCATCTAAAGTCTACTTGTCGACTTTGACCCTGGAGAC-TACCTCAT
259 TTGACCTTGGAGACTGCCTCATCTAAAGTCTACCTATCGACTTTGACCCTGAAGACTTACCT-AT
*
16836 C-TAAAGTCT-ATTGTCAG
323 CTTAAAGTCTGACTGT-AG
* * * * * *
16853 -CTTTGATCATGGAGACTTTTCTATCCTTCAGTCTGCTCTATCGACTTTGATCTTGGAGATTACC
1 ACTTTGACCATGGAGACTTTCCTATCCTTCAGTCTGC-CTGTCGACTTTGACCTTGGAGACTGCC
* * * *
16917 TCATCTAAAGTTTACCTATC-GACTTTGACCTTAGAGACTTTTCTACCCTTTAGTCTGCCTGTCG
65 TCATCTAAAGTTTGCCTGTCAG-CTTTGACCTTGGAGACTTTTCTACCCTTTAGTCTGCCTGTCA
* * * *
16981 GCTTTGACCTTGGAGACTTTCCTATCCTTCAGTCTACTTGTCGGCTTTGACCTTGGAGACTGCCT
129 GCTTTGACCTTGGAGACTTTTCTATCCTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACTGCCT
* * ** *
17046 TATCTAAAGTCTGTTTGTCGGCTTTGACCCTGGAGACTTTCCTATCTTTTAGACTGCCTATCGGC
194 TATCTAAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTA-CCCTTAGTCTGCCTATCGGC
*
17111 TTTGACCCTGGAGACT
258 TTTGACCTTGGAGACT
17127 TTCTTATCTG
Statistics
Matches: 522, Mismatches: 83, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
339 35 0.07
340 418 0.80
341 69 0.13
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.38
Consensus pattern (340 bp):
ACTTTGACCATGGAGACTTTCCTATCCTTCAGTCTGCCTGTCGACTTTGACCTTGGAGACTGCCT
CATCTAAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTTTCTACCCTTTAGTCTGCCTGTCAGC
TTTGACCTTGGAGACTTTTCTATCCTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACTGCCTTA
TCTAAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTACCCTTAGTCTGCCTATCGGCTTT
GACCTTGGAGACTGCCTCATCTAAAGTCTACCTATCGACTTTGACCCTGAAGACTTACCTATCTT
AAAGTCTGACTGTAG
Found at i:17133 original size:85 final size:85
Alignment explanation
Indices: 16139--17135 Score: 690
Period size: 85 Copynumber: 11.7 Consensus size: 85
16129 CATTAAACTT
* * * * ** * * * * *
16139 TTGGAGACTTTTCTACCCTTTAGTCTGCCTATCTACTTTGACCCTAGAGAGTTTCCTATCCTTTA
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTAT-CTTAA
16204 GTCTGCCTGTCGGCTTTGACC
65 GTCTGCCTGTCGGCTTTGACC
* * * * * * * *
16225 CTGGAGAC-TGCCTCAT-CTAAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTTCCTACCTTTT
1 TTGGAGACTTTCCT-ATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATC-TTA
* *
16288 AGTCTGCTTGTCAGCTTTGACC
64 AGTCTGCCTGTCGGCTTTGACC
* * * * * ** * *
16310 TTGGAGACTTTCTTATCCTTCAGTCTGCCTGTCAGCTTTGACCCTAGAGACTGCCTCATCTAAAG
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCTTAAG
** * *
16375 TCTGCCCATCGGTTTTAACC
66 TCTGCCTGTCGGCTTTGACC
* * * * * * * * *
16395 TTGGAGACTTTCCTACCCTT-TGTTTGCCTATTGACTTTGACCTTGGAGACTGTCTCATCTAAAG
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCTTAAG
* **
16459 TCTGCCTATCGATTTTGACC
66 TCTGCCTGTCGGCTTTGACC
* * * * * * *
16479 TTGAAGACTTTCCTATCTTTTAGTCTGCCTGTTGACTTTGACCTTGGAGACTTTCCTATCATTCA
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATC-TTAA
* * * *
16544 GTTTGCCTGTCAGTTTTCACC
65 GTCTGCCTGTCGGCTTTGACC
* * * * * * *
16565 TTGGAGAC-TGCCTCAT-CTAAAGTTTGCCTGTCAGTTTTGACCTTGGAGACTTTTTTACCCTTT
1 TTGGAGACTTTCCT-ATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTA-TC-TT
*
16628 AA-TCTGCCTGTCAGCTTTGACC
63 AAGTCTGCCTGTCGGCTTTGACC
* * * * * * *
16650 TTGAAGACTTTTCTATCCTTCAGTTTGCCTGTCGGCTTTGACCCTGGAGAC-TACTTTATCTAAA
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTC-TTATCTTAA
*
16714 GTCTGCTTGTCGGCTTTGACC
65 GTCTGCCTGTCGGCTTTGACC
* * * * ** * *
16735 TTGGAGACTTTCCTACCCTTCAGTCTGCTTGCCGGCTTTGACCTTGGAGACTGCCTCATCTAAAG
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCTTAAG
* * *
16800 TCTACTTGTCGACTTTGACC
66 TCTGCCTGTCGGCTTTGACC
* * * ** * * *
16820 CTGGAGAC-TACCTCAT-CTAAAGTCT-ATTGTCAGCTTTGATCATGGAGACTTT-TCTATCCTT
1 TTGGAGACTTTCCT-ATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCT-TAT-CTT
* * * *
16881 CAGTCTGCTCTATCGACTTTGATC
63 AAGTCTGC-CTGTCGGCTTTGACC
* * * * * * * *
16905 TTGGAGA-TTACCTCAT-CTAAAGTTTACCTATCGACTTTGACCTTAGAGACTTT-TCTACCCTT
1 TTGGAGACTTTCCT-ATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCT-TA-TCTT
*
16967 TAGTCTGCCTGTCGGCTTTGACC
63 AAGTCTGCCTGTCGGCTTTGACC
* * * ** *
16990 TTGGAGACTTTCCTATCCTTCAGTCTACTTGTCGGCTTTGACCTTGGAGACTGCCTTATCTAAAG
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCTTAAG
**
17055 TCTGTTTGTCGGCTTTGACC
66 TCTGCCTGTCGGCTTTGACC
* * * * * *
17075 CTGGAGACTTTCCTATCTTTTAGACTGCCTATCGGCTTTGACCCTGGAGACTTTCTTATCT
1 TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCT
17136 GTAGACACCT
Statistics
Matches: 718, Mismatches: 170, Indels: 47
0.77 0.18 0.05
Matches are distributed among these distances:
82 1 0.00
83 22 0.03
84 92 0.13
85 423 0.59
86 179 0.25
87 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.38
Consensus pattern (85 bp):
TTGGAGACTTTCCTATCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCTTAAG
TCTGCCTGTCGGCTTTGACC
Found at i:17447 original size:19 final size:18
Alignment explanation
Indices: 17422--17489 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
17412 AATTCAACAA
17422 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
17440 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
17456 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
17472 TATTGTATCGATACATAA
1 T-TTGTATCGATACATAA
17490 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
18 1 0.02
19 27 0.63
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:17461 original size:13 final size:13
Alignment explanation
Indices: 17443--17467 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17433 ACATAAGTGT
17443 TGTATCGATACAA
1 TGTATCGATACAA
17456 TGTATCGATACA
1 TGTATCGATACA
17468 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:17461 original size:32 final size:32
Alignment explanation
Indices: 17424--17486 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
17414 TTCAACAATT
*
17424 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
17456 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
17487 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:17552 original size:21 final size:21
Alignment explanation
Indices: 17508--17564 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
17498 TGCCAAGGAA
*
17508 TGTATCGATACAT-TTTTCTG
1 TGTATCGATACATCTATTCTG
*
17528 TGTATCGATACATCTATTCTT
1 TGTATCGATACATCTATTCTG
*
17549 TGTATCAATACATCTA
1 TGTATCGATACATCTA
17565 GGAAGTTTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.46
Consensus pattern (21 bp):
TGTATCGATACATCTATTCTG
Found at i:19964 original size:51 final size:51
Alignment explanation
Indices: 19909--20026 Score: 156
Period size: 51 Copynumber: 2.4 Consensus size: 51
19899 CAATTCTCCG
*
19909 TAATCGGGGATATTCCAACTCCGATTTCATTT-TGAAAACACT-AATTTTCTA
1 TAATCGGGGATACTCCAACTCCGATTTCATTTCT-AAAACA-TGAATTTTCTA
*
19960 TAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATGAA-TTT-T-
1 TAATCGGGGATACTCCAACTCCGATTTCATTTCTAAAACATGAATTTTCTA
*
20008 TCATCGGGGATACTCCAAC
1 TAATCGGGGATACTCCAAC
20027 CCCGTTAATC
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
48 18 0.29
49 1 0.02
50 4 0.06
51 38 0.61
52 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (51 bp):
TAATCGGGGATACTCCAACTCCGATTTCATTTCTAAAACATGAATTTTCTA
Found at i:20080 original size:28 final size:27
Alignment explanation
Indices: 20008--20084 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 27
19998 CATGAATTTT
*
20008 TCATCGGGGATACTCCAACCCCGTTAA
1 TCATCGGGGATACTCCAACCCCATTAA
20035 TCATCGGGGATACTCCAACCCCATT-A
1 TCATCGGGGATACTCCAACCCCATTAA
**
20061 TTTTCGAGGGGATACTCCAACCCC
1 TCATC--GGGGATACTCCAACCCC
20085 CGACTTTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.09
27 24 0.53
28 17 0.38
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCATTAA
Found at i:20213 original size:79 final size:80
Alignment explanation
Indices: 20037--20216 Score: 240
Period size: 80 Copynumber: 2.3 Consensus size: 80
20027 CCCGTTAATC
* * *
20037 ATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCCGACTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCCGACTTTATTTCTAAAA
* *
20102 TATTAATTTCTCATA
66 TATGAATTTCTCACA
** *
20117 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAA-CCCCGGTTTTATTTC-CAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCCGACTTTATTTCTAAAA
*
20180 TCATCGATTTTC-CACA
66 T-AT-GAATTTCTCACA
20196 ATCGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
20217 GCTTTATTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 4 0.04
79 39 0.44
80 46 0.52
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCCGACTTTATTTCTAAAA
TATGAATTTCTCACA
Found at i:20275 original size:52 final size:51
Alignment explanation
Indices: 20149--20317 Score: 187
Period size: 52 Copynumber: 3.3 Consensus size: 51
20139 TATCTCCGAG
* * * *
20149 GGGATACTCCAACCCCGGTTTTATTTCCAAATCATCGATTTTCCACAATCG
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCACAATCA
* * **
20200 GGGATACTCCAACCCCGGCTTTATTTTCAAAACACCAATTTTCCTTTAATCA
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCC-ACAATCA
* * * * *
20252 GGGATACTCCAACTCCGATTTTATTTCCAAAAACACTAATTTTTCACAAT-T
1 GGGATACTCCAACCCCGGTTTTATTTCC-AAAACACCAATTTTCCACAATCA
20303 GAGGATACTCCAACC
1 G-GGATACTCCAACC
20318 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
51 40 0.41
52 43 0.44
53 14 0.14
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCACAATCA
Found at i:22037 original size:79 final size:79
Alignment explanation
Indices: 21842--22071 Score: 211
Period size: 79 Copynumber: 2.9 Consensus size: 79
21832 ATATTTCCCG
* * * * * *
21842 ATGAGAAATTTAATGTTTT-GGAGATAATACCGGGGTTGGAGTGT--TCTTGAAAATAACGGGGC
1 ATGAGAAA-TCAATATTTTGGGA-ATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGT
**
21904 TGGAGTATCCCCGGTT
64 TGGAGTATCCCCAATT
* * * ** * * * *
21920 GTGAGAAATCGATGA-TTAGAAAAAAAAATCGAGATTGGAGTATCCTCTCGAAAATAACGGGGTT
1 ATGAGAAATCAAT-ATTTTGGGAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTT
21984 GGAGTATCCCCAATT
65 GGAGTATCCCCAATT
*
21999 ATGAGAAATCAATATTTTGGGAATAAAACCGGGGTTGGAGTATCC-C-CGATGAAATAACGAGGT
1 ATGAGAAATCAATATTTTGGGAATAAAACCGGGGTTGGAGTATCCTCTCGA--AAATAACGGGGT
22062 TGGAGTATCC
64 TGGAGTATCC
22072 TCGATTGTGA
Statistics
Matches: 118, Mismatches: 27, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
77 23 0.19
78 10 0.08
79 85 0.72
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (79 bp):
ATGAGAAATCAATATTTTGGGAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTG
GAGTATCCCCAATT
Found at i:22125 original size:80 final size:76
Alignment explanation
Indices: 21890--22126 Score: 197
Period size: 79 Copynumber: 3.0 Consensus size: 76
21880 GAGTGTTCTT
* * ** * * * * * *
21890 GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTAGAAAAAAAAATCGAGA
1 GAAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAAT-ATTTTGGAAATAAAATCGAG-
21954 TTGGAGTATCCTCTC
64 TTGGAGTATCC-C-C
* * * * *
21969 GAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAACCGGGGT
1 GAAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAATC-GAGT
22034 TGGAGTATCCCC
65 TGGAGTATCCCC
* * * ***
22046 GATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCAG
1 GA--AAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATA-TTTTGGAAATAAAATC-G
22111 AGTTGGAGTATCCCC
62 AGTTGGAGTATCCCC
22126 G
1 G
22127 TTTAAAGGGA
Statistics
Matches: 130, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
77 3 0.02
78 2 0.02
79 93 0.72
80 32 0.25
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (76 bp):
GAAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAATCGAGTT
GGAGTATCCCC
Found at i:22210 original size:52 final size:51
Alignment explanation
Indices: 22059--22444 Score: 232
Period size: 52 Copynumber: 7.4 Consensus size: 51
22049 GAAATAACGA
* * * * * *
22059 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGT-GTTTTAGAAATAAAATCGG
* * * * * *
22111 AGTTGGAGTATCCCCGTTTAAAGGGAAAATTGGTGTTTT-GAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTAGTGTTTTAG-AAATAAAATCGG
* * * *
22164 GGTTAGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAATTGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTGTTTTAGAAATAAAATCGG
* * *
22216 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAAT-AAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGG
* * ** ** * *
22266 GGTTGGAGTATCCTC--TT-GGAAATAA-CGGTGTTGGAGTATCCCCGATGATTAA-CGG
1 GGTTGGAGTATCCCCGATTATGAAA-AATTAGTGTTTTAG-A-----AAT-A-AAATCGG
* * * *
22321 GGTTAGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAA-AAATTAGTG--TTTTAGAAATAAAATCGG
*
22375 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTT-GAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTAG-AAATAAAATCGG
* *
22426 AGTTGGAATATCCCCGATT
1 GGTTGGAGTATCCCCGATT
22445 GTGGAGAATT
Statistics
Matches: 260, Mismatches: 49, Indels: 51
0.72 0.14 0.14
Matches are distributed among these distances:
47 10 0.04
48 5 0.02
50 21 0.08
51 52 0.20
52 59 0.23
53 44 0.17
54 33 0.13
55 18 0.07
56 2 0.01
57 2 0.01
58 5 0.02
59 5 0.02
60 1 0.00
61 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGG
Found at i:22422 original size:51 final size:53
Alignment explanation
Indices: 22060--22444 Score: 190
Period size: 51 Copynumber: 7.3 Consensus size: 53
22050 AAATAACGAG
* * * * * *
22060 GTTGGAGTATCCTCGATTGTGAA-AAATTGGTATTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGA
* * * *
22112 GTTGGAGTATCCCCG-TT-TAAAGGGAAAATTGGTG-TTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTATGAA--G-AAATTAGTGTTTTTGAAAATAAAATCGGA
* * * * * *
22165 GTTAGAGTATCCCCGATTGTGGAA-AAATTAGTGTTTTAG-CAATAAAATTGGG
1 GTTGGAGTATCCCCGATTAT-GAAGAAATTAGTGTTTTTGAAAATAAAATCGGA
* * * * *
22217 GTTGGAGTATCCCCGATTATGAA-AAATCAATATTTTAG-AAAT-AAATCGGG
1 GTTGGAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGA
* * *** * **** ** * *
22267 GTTGGAGTATCCTCTTGGA-AAT-AACGGTGTTGGAGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCC-C--CGATTATGAA-GAAATT--AGTGTTTTTGAAAATAAAATCGGA
* * * *
22322 GTTAGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGA
22376 GTTGGAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGA
*
22427 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
22445 GTGGAGAATT
Statistics
Matches: 253, Mismatches: 58, Indels: 45
0.71 0.16 0.13
Matches are distributed among these distances:
50 22 0.09
51 60 0.24
52 60 0.24
53 50 0.20
54 34 0.13
55 21 0.08
56 6 0.02
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.31
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGA
Found at i:23313 original size:55 final size:54
Alignment explanation
Indices: 23227--24032 Score: 817
Period size: 55 Copynumber: 14.0 Consensus size: 54
23217 ATAAAGTGTA
* * *
23227 TCCTGCTCTTTGAGGACTAAAAAGTGTCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
23282 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
23337 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* * * *
23397 TCCCGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
23452 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
23513 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
23568 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
23629 TCCTGCTCTTTGAGGACTGGAAGTGCCACTAACTTGTGTGGGCTTTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGC--TTTGAAAGGCG
* * *
23685 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGATTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* * * *
23746 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTGAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTT----TG-AAAGGCG
*
23805 TCCCGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* *
23864 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* *
23925 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTCGAAAGG-G
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
23979 ATCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 -TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGG
24033 AAAAAGCATC
Statistics
Matches: 657, Mismatches: 49, Indels: 90
0.83 0.06 0.11
Matches are distributed among these distances:
54 9 0.01
55 247 0.38
56 31 0.05
57 21 0.03
58 2 0.00
59 68 0.10
60 115 0.18
61 155 0.24
62 3 0.00
64 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:23362 original size:26 final size:26
Alignment explanation
Indices: 23273--23362 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
23263 GTGTGGGCTT
*
23273 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
23299 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
*
23326 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
23354 TGAAAGGTG
1 TGAAAGGTG
23363 CCACCAACTT
Statistics
Matches: 46, Mismatches: 13, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
25 3 0.07
26 16 0.35
27 8 0.17
28 8 0.17
29 8 0.17
30 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:23560 original size:116 final size:114
Alignment explanation
Indices: 23227--24032 Score: 949
Period size: 116 Copynumber: 7.0 Consensus size: 114
23217 ATAAAGTGTA
* * *
23227 TCCTGCTCTTTGAGGACTAAAAAGTGTCACCAACTCGTGTGGGCTTT----G-AAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* * *
23287 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
66 CTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* *
23337 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCC
1 TCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
*
23401 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
65 GCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* *
23452 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCT
*
23517 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACG
65 GCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * * * *
23568 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGAGAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAA-AAGAAAAGGCGTCCT
* * *
23633 GCTCTTTGAGGACTGGAAGTGCCACTAACTTGTGTGGGCTTTTTGAAAGGGG
65 GCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGC--TTTAAAAGGCG
* * * *
23685 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGATTTGAAAAGAAAAAGCATCC
1 TCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCC
* * *
23749 TGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGGGTGGGCTTGAAAAGAAAAGGCA
64 TGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTT-----TAAAAGGCG
* * *
23805 TCCCGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
*
23869 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
66 CTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCG
* * *
23925 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TT---CG-AAAGG-GATCCT
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG-TCCT
* * *
23984 GCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
65 GCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGG
24033 AAAAAGCATC
Statistics
Matches: 609, Mismatches: 55, Indels: 64
0.84 0.08 0.09
Matches are distributed among these distances:
109 3 0.00
110 44 0.07
111 1 0.00
114 1 0.00
115 127 0.21
116 190 0.31
117 96 0.16
118 30 0.05
119 46 0.08
120 49 0.08
121 22 0.04
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (114 bp):
TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
CTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
Found at i:23967 original size:412 final size:401
Alignment explanation
Indices: 23226--24064 Score: 1215
Period size: 412 Copynumber: 2.1 Consensus size: 401
23216 AATAAAGTGT
*
23226 ATCCTGCTCTTTGAGGACTAAAAAGTGTCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * **
23291 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGATTTAAGAAGCATCCTGCTCTTTGAGGACTG
* * * *
23356 AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCCGCTCTTTGAGGACTGGGAAG
131 AAAGGTGCCACCAACTTGGGTGGGCTTGAAAAGAAAAAGCATCCCGCTCTTTGAGGACT-GAAAG
* *
23421 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAAC
195 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCCGCTCTTTGAGGACTAGGAAATGCCACCAAC
23486 TTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGT
260 TTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGT
* *
23551 GTGGGCTTTAAAAGACG-TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTT
325 GTGGGCTTCAAAAG-CGATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTT
* *
23614 T-AAGAGGAGAAGGC
388 TGAA-AGGAAAAAGC
** * * *
23628 ATCCTGCTCTTTGAGGACT-GGAAGTGCCACTAACTTGTGTGGGCTTTTTGAAAGGGGTCCTGCT
1 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGC--TTTGAAAGGCGTCCTGCT
*
23692 CTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGATTTGAAAAGAAAAAGCATCCTGCTCTTT
64 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGATTT---AAG---AAGCATCCTGCTCTTT
*
23757 GAGGACTG-AAGGTGCCACCAACTTGGGTGGGCTTGAAAAGAAAAGGCATCCCGCTCTTTGAGGA
123 GAGGACTGAAAGGTGCCACCAACTTGGGTGGGCTTGAAAAGAAAAAGCATCCCGCTCTTTGAGGA
*
23821 CT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACT-GG
188 CTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCATCCCGCTCTTTGAGGACTAGG
23884 AAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAG
247 -AAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAG
* * *
23949 TGCCACCAACTTGTGTGGGCTTCGAAAGGGATCCTGCTCTTTGGGGACTGAAAGGTGCCACCAAC
311 TGCCACCAACTTGTGTGGGCTTCAAAAGCGATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
24014 TTGTGTGGGCTTTGAAAGGAAAAAGC
376 TTGTGTGGGCTTTGAAAGGAAAAAGC
*
24040 ATCCTGCTCTTTGAGGGCTAAAAAG
1 ATCCTGCTCTTTGAGGACTAAAAAG
24065 CGGAAGGAGA
Statistics
Matches: 389, Mismatches: 29, Indels: 27
0.87 0.07 0.06
Matches are distributed among these distances:
401 20 0.05
402 19 0.05
403 55 0.14
406 5 0.01
407 24 0.06
408 54 0.14
409 21 0.05
411 6 0.02
412 180 0.46
413 5 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (401 bp):
ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGATTTAAGAAGCATCCTGCTCTTTGAGGACTG
AAAGGTGCCACCAACTTGGGTGGGCTTGAAAAGAAAAAGCATCCCGCTCTTTGAGGACTGAAAGT
GCCACCAACTTGTGTGGGCTTTAAAAGGCATCCCGCTCTTTGAGGACTAGGAAATGCCACCAACT
TGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTG
TGGGCTTCAAAAGCGATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGA
AAGGAAAAAGC
Found at i:25056 original size:14 final size:13
Alignment explanation
Indices: 25024--25096 Score: 65
Period size: 15 Copynumber: 5.2 Consensus size: 13
25014 AAGCAGGTTC
*
25024 TTTTTCTTTTCTCTC
1 TTTTTCTTTT-T-TT
*
25039 TTTTTCTTTGTTT
1 TTTTTCTTTTTTT
*
25052 TTTTTGTTTTGTTT
1 TTTTTCTTTT-TTT
25066 TTTCTTCTTTTTTT
1 TTT-TTCTTTTTTT
25080 TTTGCTTCTTTTTTT
1 TTT--TTCTTTTTTT
25095 TT
1 TT
25097 GAAGAGAAGG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
13 9 0.18
14 13 0.26
15 28 0.56
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:25061 original size:28 final size:27
Alignment explanation
Indices: 25024--25082 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
25014 AAGCAGGTTC
25024 TTTTTCTTTTCTCTCTTT-TTCTTTGTTT
1 TTTTTCTTTTCT-TCTTTCTTCTTT-TTT
* * *
25052 TTTTTGTTTTGTTTTTTCTTCTTTTTT
1 TTTTTCTTTTCTTCTTTCTTCTTTTTT
25079 TTTT
1 TTTT
25083 GCTTCTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.41
28 16 0.59
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.83
Consensus pattern (27 bp):
TTTTTCTTTTCTTCTTTCTTCTTTTTT
Found at i:25076 original size:15 final size:14
Alignment explanation
Indices: 25042--25096 Score: 67
Period size: 15 Copynumber: 3.9 Consensus size: 14
25032 TTCTCTCTTT
*
25042 TTCTTTGTTTTTT-
1 TTCTTTTTTTTTTC
*
25055 TTGTTTTGTTTTTTC
1 TTCTTTT-TTTTTTC
25070 TTCTTTTTTTTTTGC
1 TTCTTTTTTTTTT-C
25085 TTCTTTTTTTTT
1 TTCTTTTTTTTT
25097 GAAGAGAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
13 5 0.14
14 12 0.33
15 19 0.53
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (14 bp):
TTCTTTTTTTTTTC
Found at i:25078 original size:35 final size:35
Alignment explanation
Indices: 25030--25097 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
25020 GTTCTTTTTC
*
25030 TTTTCTCTCTTTTTCTTTG-TTTTTTTTGTTTTGTT
1 TTTTCTCTCTTTTTCTTTGCTTCTTTTT-TTTTGTT
*
25065 TTTTCT-TCTTTTTTTTTTGCTTCTTTTTTTTTG
1 TTTTCTCTC-TTTTTCTTTGCTTCTTTTTTTTTG
25098 AAGAGAAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 2 0.07
35 20 0.69
36 7 0.24
ACGTcount: A:0.00, C:0.12, G:0.07, T:0.81
Consensus pattern (35 bp):
TTTTCTCTCTTTTTCTTTGCTTCTTTTTTTTTGTT
Found at i:25091 original size:25 final size:25
Alignment explanation
Indices: 25021--25093 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
25011 CTTAAGCAGG
*
25021 TTCTTTTTCTTTT-C-TCTCTTTTTC
1 TTCTTTTTTTTTTGCTTCT-TTTTTC
* * *
25045 TT-TGTTTTTTTTGTTTTGTTTTTTC
1 TTCTTTTTTTTTTG-CTTCTTTTTTC
25070 TTCTTTTTTTTTTGCTTCTTTTTT
1 TTCTTTTTTTTTTGCTTCTTTTTT
25094 TTTGAAGAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
23 8 0.21
24 2 0.05
25 16 0.42
26 12 0.32
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (25 bp):
TTCTTTTTTTTTTGCTTCTTTTTTC
Found at i:25097 original size:14 final size:14
Alignment explanation
Indices: 25049--25097 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
25039 TTTTTCTTTG
25049 TTTTTTTTG-TT-T
1 TTTTTTTTGCTTCT
*
25061 TGTTTTTT-CTTCTT
1 TTTTTTTTGCTTC-T
25075 TTTTTTTTGCTTCT
1 TTTTTTTTGCTTCT
25089 TTTTTTTTG
1 TTTTTTTTG
25098 AAGAGAAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 9 0.29
14 18 0.58
15 4 0.13
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (14 bp):
TTTTTTTTGCTTCT
Found at i:29232 original size:13 final size:13
Alignment explanation
Indices: 29214--29239 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29204 CAATTTTTTG
29214 TGTATCGATACAT
1 TGTATCGATACAT
29227 TGTATCGATACAT
1 TGTATCGATACAT
29240 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:29988 original size:21 final size:21
Alignment explanation
Indices: 29947--29990 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
29937 CTCCCCTTTA
* *
29947 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
29968 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
29989 TC
1 TC
29991 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:31770 original size:13 final size:13
Alignment explanation
Indices: 31752--31777 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31742 ATAAACACCC
31752 TGTATCGATACAA
1 TGTATCGATACAA
31765 TGTATCGATACAA
1 TGTATCGATACAA
31778 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:35736 original size:21 final size:21
Alignment explanation
Indices: 35689--35733 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
35679 AAGTTTTCAT
35689 TTTTC-TTAGCTAACTCATTA
1 TTTTCATTAGCTAACTCATTA
*
35709 TTTTCATTAGCTAACTTCTTTA
1 TTTTCATTAGCTAAC-TCATTA
35731 TTT
1 TTT
35734 CATCTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCATTAGCTAACTCATTA
Found at i:37968 original size:13 final size:13
Alignment explanation
Indices: 37950--37975 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37940 CAATTTTTTG
37950 TGTATCGATACAT
1 TGTATCGATACAT
37963 TGTATCGATACAT
1 TGTATCGATACAT
37976 ACTTGCTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:39176 original size:20 final size:20
Alignment explanation
Indices: 39151--39204 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
39141 AAATTTCCAA
39151 ATGTATCGATACAAAGATCC
1 ATGTATCGATACAAAGATCC
39171 ATGTATCGATACAAAGATCC
1 ATGTATCGATACAAAGATCC
*
39191 ATCTATCGATACAA
1 ATGTATCGATACAA
39205 TGTATCGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (20 bp):
ATGTATCGATACAAAGATCC
Found at i:39231 original size:33 final size:33
Alignment explanation
Indices: 39171--39236 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
39161 ACAAAGATCC
***
39171 ATGTATCGATACAAAGATCCATCTATCGATACA
1 ATGTATCGATACAAAGAAAAATCTATCGATACA
* *
39204 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATCTATCGATACA
39237 TTTCTTTGGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATCTATCGATACA
Found at i:39280 original size:19 final size:18
Alignment explanation
Indices: 39256--39323 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
39246 CAGTAGCTAA
39256 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
39275 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
39290 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
39307 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
39324 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:39296 original size:13 final size:13
Alignment explanation
Indices: 39278--39302 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39268 ACAATACTTA
39278 TGTATCGATACAT
1 TGTATCGATACAT
39291 TGTATCGATACA
1 TGTATCGATACA
39303 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:39300 original size:32 final size:32
Alignment explanation
Indices: 39259--39321 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
39249 TAGCTAATTA
*
39259 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
39291 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
39322 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:40268 original size:42 final size:42
Alignment explanation
Indices: 40207--40322 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
40197 ACTATCCTTT
* *
40207 AGTCTGCCTGTTGGTTTTGACCTTGGAGATTGCCTCATC-TAA
1 AGTCTGCCTGTTGGCTTTGACCCTGGAGATTGCCT-ATCTTAA
* * **
40249 AGTCTGCCTGTTGACTTTGACCCTGGAGACTTTCCTATCTTTC
1 AGTCTGCCTGTTGGCTTTGACCCTGGAGA-TTGCCTATCTTAA
* *
40292 AGTCTGCCTGTCGGCTTTGACCCTAGAGATT
1 AGTCTGCCTGTTGGCTTTGACCCTGGAGATT
40323 TTCCTACCCT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 31 0.49
43 32 0.51
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (42 bp):
AGTCTGCCTGTTGGCTTTGACCCTGGAGATTGCCTATCTTAA
Found at i:40310 original size:43 final size:42
Alignment explanation
Indices: 40198--40355 Score: 142
Period size: 42 Copynumber: 3.7 Consensus size: 42
40188 CGTTGCGACA
* * * *
40198 CTATCCTTT-AGTCTGCCTGTTGGTTTTGACCTTGGAGATTGC
1 CTAT-CTTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGATTTC
** * *
40240 CTCATC-TAAAGTCTGCCTGTTGACTTTGACCCTGGAGACTTTC
1 CT-ATCTTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGA-TTTC
*
40283 CTATCTTTCAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTTC
1 CTATCTTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGA-TTTC
** * *
40326 CTA-CCCTCAGTCTACCTGTCGGTTTTGACC
1 CTATCTTTCAGTCTGCCTGTCGGCTTTGACC
40356 TTGAAGGCTT
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 55 0.57
43 41 0.42
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.38
Consensus pattern (42 bp):
CTATCTTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGATTTC
Found at i:40353 original size:42 final size:43
Alignment explanation
Indices: 40249--40355 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
40239 CCTCATCTAA
* * * * **
40249 AGTCTGCCTGTTGACTTTGACCCTGGAGACTTTCCTATCTTTC
1 AGTCTACCTGTCGGCTTTGACCCTAGAGACTTTCCTATCCCTC
* *
40292 AGTCTGCCTGTCGGCTTTGACCCTAGAGATTTTCCTA-CCCTC
1 AGTCTACCTGTCGGCTTTGACCCTAGAGACTTTCCTATCCCTC
*
40334 AGTCTACCTGTCGGTTTTGACC
1 AGTCTACCTGTCGGCTTTGACC
40356 TTGAAGGCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 23 0.41
43 33 0.59
ACGTcount: A:0.14, C:0.30, G:0.20, T:0.36
Consensus pattern (43 bp):
AGTCTACCTGTCGGCTTTGACCCTAGAGACTTTCCTATCCCTC
Found at i:40531 original size:85 final size:85
Alignment explanation
Indices: 40368--40531 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 85
40358 GAAGGCTTCA
* * *
40368 TTACTCTTGGTGACTTATCGGCTTTGTCCTCGGTCAGCCTTTCTTACACTTTGTTTACTTGTCGG
1 TTACTCTTGGTGACCTATCAGCTTTGTCCTCGGTCAGCCTTTCTTACACTTTGTCTACTTGTCGG
* **
40433 CTATGTCTTTGGTAAACTTT
66 CTATGCCAGTGGTAAACTTT
* * *
40453 TTACTCTTGGTGACCTGTTAGCTTTGTCC-CTGGTCAGCCTTTCTTACCCTTTGTCTACTTGTCG
1 TTACTCTTGGTGACCTATCAGCTTTGTCCTC-GGTCAGCCTTTCTTACACTTTGTCTACTTGTCG
* *
40517 GTTTTGCCAGTGGTA
65 GCTATGCCAGTGGTA
40532 GGCTTCTTAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
84 1 0.01
85 66 0.99
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.45
Consensus pattern (85 bp):
TTACTCTTGGTGACCTATCAGCTTTGTCCTCGGTCAGCCTTTCTTACACTTTGTCTACTTGTCGG
CTATGCCAGTGGTAAACTTT
Found at i:42866 original size:20 final size:20
Alignment explanation
Indices: 42820--42872 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
42810 GTTCAACTGA
* *
42820 AAAAGAAAGAAAGAAAACAC
1 AAAAGAAAGAAGGAAAACAG
42840 AAAAGAAAGAAGGAAAA-AG
1 AAAAGAAAGAAGGAAAACAG
42859 AAATAGAAA-AAGGA
1 AAA-AGAAAGAAGGA
42873 GAGAGTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 9 0.30
20 21 0.70
ACGTcount: A:0.74, C:0.04, G:0.21, T:0.02
Consensus pattern (20 bp):
AAAAGAAAGAAGGAAAACAG
Found at i:46583 original size:14 final size:13
Alignment explanation
Indices: 46553--46612 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
46543 ATAATTTTTT
* *
46553 ATTTTTTAAATAT
1 ATTTTTTAATTAA
46566 ATTTTTTAATTTAA
1 ATTTTTTAA-TTAA
*
46580 ATTTTAATAATTAA
1 ATTTT-TTAATTAA
46594 ATATTTTTAA-T-A
1 AT-TTTTTAATTAA
46606 ATTTTTT
1 ATTTTTT
46613 TGTTAATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.12
12 3 0.08
13 10 0.25
14 16 0.40
15 6 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTTTAATTAA
Found at i:46839 original size:18 final size:18
Alignment explanation
Indices: 46818--46867 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
46808 TTTAAGACTC
46818 ATTTTATTTTTTAAATAA
1 ATTTTATTTTTTAAATAA
* **
46836 ATTTTAATTTTTATCTAA
1 ATTTTATTTTTTAAATAA
*
46854 A-TTAATTTTTTAAA
1 ATTTTATTTTTTAAA
46868 CTTAAAATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTATTTTTTAAATAA
Found at i:48570 original size:2 final size:2
Alignment explanation
Indices: 48565--48595 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
48555 TATATGCGTC
*
48565 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48596 TTCTTTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48974 original size:15 final size:17
Alignment explanation
Indices: 48944--48975 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48934 TATTTACTCC
48944 AAAAAATATATATTAAT
1 AAAAAATATATATTAAT
48961 AAAAAAT-TAT-TTAAT
1 AAAAAATATATATTAAT
48976 TTAATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 3 0.20
17 7 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAAAATATATATTAAT
Found at i:49542 original size:21 final size:20
Alignment explanation
Indices: 49500--49570 Score: 56
Period size: 20 Copynumber: 3.6 Consensus size: 20
49490 TCTATTTTAG
* * *
49500 TTTTTTAGTTTTGCTTTCTT
1 TTTTTTATTTTTCCATTCTT
*
49520 TTTTTTATTTTTCCATTCAT
1 TTTTTTATTTTTCCATTCTT
* * *
49540 TTTCTTAATTTT--ATTTTT
1 TTTTTTATTTTTCCATTCTT
*
49558 TTTTTTACTTTTC
1 TTTTTTATTTTTC
49571 TTTATGTTTT
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
18 14 0.35
20 26 0.65
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.75
Consensus pattern (20 bp):
TTTTTTATTTTTCCATTCTT
Found at i:50554 original size:14 final size:14
Alignment explanation
Indices: 50535--50583 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
50525 GGTATAACTG
50535 AAAAAAAAGAGAGA
1 AAAAAAAAGAGAGA
*
50549 AAAAAATAGAGA-A
1 AAAAAAAAGAGAGA
*
50562 AGAAAAAA-AG-GA
1 AAAAAAAAGAGAGA
*
50574 AAAAGAAAGA
1 AAAAAAAAGA
50584 AATAGAATGA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
12 9 0.32
13 8 0.29
14 11 0.39
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (14 bp):
AAAAAAAAGAGAGA
Found at i:50758 original size:2 final size:2
Alignment explanation
Indices: 50751--50797 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
50741 TGATGAATAA
50751 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50793 AT AT A
1 AT AT A
50798 CACTTGTGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:54022 original size:13 final size:13
Alignment explanation
Indices: 54004--54029 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53994 TACAGCAAGT
54004 ATGTATCGATACA
1 ATGTATCGATACA
54017 ATGTATCGATACA
1 ATGTATCGATACA
54030 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:56281 original size:21 final size:21
Alignment explanation
Indices: 56248--56292 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
56238 TTGCAAGTTG
*
56248 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
56270 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
56290 AAA
1 AAA
56293 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:58115 original size:15 final size:15
Alignment explanation
Indices: 58095--58125 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58085 TAAAAATGTC
*
58095 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
58110 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
58125 C
1 C
58126 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:60210 original size:20 final size:20
Alignment explanation
Indices: 60131--60210 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
60121 AATGTCCAAA
*
60131 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
60151 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
60176 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
60196 TTGTATCGATACATT
1 ATGTATCGATACATT
60211 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:60214 original size:13 final size:13
Alignment explanation
Indices: 60196--60234 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
60186 ACATTTTTCT
60196 TTGTATCGATACA
1 TTGTATCGATACA
60209 TTGTATCGATACA
1 TTGTATCGATACA
*
60222 CTGTATCGATACA
1 TTGTATCGATACA
60235 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:62793 original size:13 final size:13
Alignment explanation
Indices: 62775--62800 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62765 TACAGCAAGT
62775 ATGTATCGATACA
1 ATGTATCGATACA
62788 ATGTATCGATACA
1 ATGTATCGATACA
62801 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:64764 original size:19 final size:18
Alignment explanation
Indices: 64740--64834 Score: 93
Period size: 19 Copynumber: 5.7 Consensus size: 18
64730 AAACAGTAAC
64740 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
64759 TGTATCGAT--ATAA---
1 TGTATCGATACATAAGTT
64772 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
64791 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
64804 TGTATCGATACATAAGTAT
1 TGTATCGATACATAAGT-T
64823 TGTATCGATACA
1 TGTATCGATACA
64835 ATGTATCGCT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 20 0.31
15 6 0.09
17 6 0.09
19 32 0.50
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:64781 original size:32 final size:32
Alignment explanation
Indices: 64740--64847 Score: 189
Period size: 32 Copynumber: 3.4 Consensus size: 32
64730 AAACAGTAAC
*
64740 TGTATCGATACATAAGTGTTGTATCGATATAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
64772 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
64804 TGTATCGATACATAAGTATTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
64836 TGTATCGCTACA
1 TGTATCGATACA
64848 AAGCTACTAC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 73 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:64814 original size:13 final size:13
Alignment explanation
Indices: 64759--64848 Score: 54
Period size: 13 Copynumber: 6.0 Consensus size: 13
64749 ACATAAGTGT
*
64759 TGTATCGATATAA
1 TGTATCGATACAA
64772 TGTATCGATACATAA
1 TGTATCGATAC--AA
64787 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
64804 TGTATCGATACATAAGTA
1 TGTATCGATAC---A--A
64822 TTGTATCGATACAA
1 -TGTATCGATACAA
*
64836 TGTATCGCTACAA
1 TGTATCGATACAA
64849 AGCTACTACC
Statistics
Matches: 63, Mismatches: 2, Indels: 24
0.71 0.02 0.27
Matches are distributed among these distances:
13 33 0.52
14 1 0.02
15 2 0.03
16 2 0.03
17 2 0.03
18 1 0.02
19 22 0.35
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:64909 original size:20 final size:20
Alignment explanation
Indices: 64886--64951 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
64876 CGTTACTCAA
64886 TGTATCGATACATTGATCTT
1 TGTATCGATACATTGATCTT
64906 TGTATCGATAC----A---T
1 TGTATCGATACATTGATCTT
64919 TGTATCGATACATTGATCTT
1 TGTATCGATACATTGATCTT
64939 TGTATCGATACAT
1 TGTATCGATACAT
64952 CTGCGAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
16 1 0.03
17 1 0.03
20 25 0.64
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTGATCTT
Found at i:64923 original size:13 final size:13
Alignment explanation
Indices: 64905--64933 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64895 ACATTGATCT
64905 TTGTATCGATACA
1 TTGTATCGATACA
64918 TTGTATCGATACA
1 TTGTATCGATACA
64931 TTG
1 TTG
64934 ATCTTTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:64928 original size:33 final size:33
Alignment explanation
Indices: 64886--64951 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
64876 CGTTACTCAA
64886 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCTTTGTATCGATACAT
64919 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCTTTGTATCGATACAT
64952 CTGCGAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTGATCTTTGTATCGATACAT
Found at i:78526 original size:1 final size:1
Alignment explanation
Indices: 78520--78611 Score: 67
Period size: 1 Copynumber: 92.0 Consensus size: 1
78510 CGTCCTTCGC
* * * * * * * * * *
78520 AAAAAAAAAACAAAAAACAACAAAACAAAAAAAAGAGAAAAAAAAACAAAAAACAAACAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
78585 AAAAAAACAAAAACAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
78612 GGTTCGGATG
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:78536 original size:10 final size:10
Alignment explanation
Indices: 78521--78610 Score: 87
Period size: 10 Copynumber: 8.9 Consensus size: 10
78511 GTCCTTCGCA
78521 AAAAAAAAAC
1 AAAAAAAAAC
*
78531 AAAAAACAAC
1 AAAAAAAAAC
78541 AAAACAAAAA-
1 AAAA-AAAAAC
*
78551 AAAGAGAAAAAA
1 AAA-A-AAAAAC
78563 AAACAAAAAAC
1 AAA-AAAAAAC
*
78574 AAACAAAAAC
1 AAAAAAAAAC
78584 -AAAAAAAAC
1 AAAAAAAAAC
*
78593 -AAAAACAAC
1 AAAAAAAAAC
78602 AAAAAAAAA
1 AAAAAAAAA
78611 AGGTTCGGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
9 16 0.24
10 29 0.43
11 18 0.27
12 4 0.06
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:78546 original size:15 final size:15
Alignment explanation
Indices: 78526--78611 Score: 74
Period size: 14 Copynumber: 5.7 Consensus size: 15
78516 TCGCAAAAAA
78526 AAAACAAAAAACAAC
1 AAAACAAAAAACAAC
*
78541 AAAACAAAAAA-AAG
1 AAAACAAAAAACAAC
78555 AGAAA-AAAAAACAA-
1 A-AAACAAAAAACAAC
78569 AAAACAAACAAA-AAC
1 AAAACAAA-AAACAAC
*
78584 AAAAAAAACAAAAACAAC
1 --AAAACA-AAAAACAAC
78602 AAAA-AAAAAA
1 AAAACAAAAAA
78612 GGTTCGGATG
Statistics
Matches: 60, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
13 3 0.05
14 20 0.33
15 20 0.33
16 4 0.07
17 8 0.13
18 5 0.08
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (15 bp):
AAAACAAAAAACAAC
Found at i:78548 original size:26 final size:26
Alignment explanation
Indices: 78522--78609 Score: 110
Period size: 26 Copynumber: 3.3 Consensus size: 26
78512 TCCTTCGCAA
78522 AAAAAAAACAAAAAACAACAAAACAA-
1 AAAAAAAACAAAAAA-AACAAAACAAC
78548 AAAAAAGAGA-AAAAAAAACAAAA-AAC
1 AAAAAA-A-ACAAAAAAAACAAAACAAC
78574 AAACAAAAACAAAAAAAACAAAAACAAC
1 AAA-AAAAACAAAAAAAAC-AAAACAAC
78602 AAAAAAAA
1 AAAAAAAA
78610 AAGGTTCGGA
Statistics
Matches: 55, Mismatches: 0, Indels: 13
0.81 0.00 0.19
Matches are distributed among these distances:
25 3 0.05
26 26 0.47
27 19 0.35
28 7 0.13
ACGTcount: A:0.85, C:0.12, G:0.02, T:0.00
Consensus pattern (26 bp):
AAAAAAAACAAAAAAAACAAAACAAC
Found at i:78561 original size:37 final size:38
Alignment explanation
Indices: 78521--78591 Score: 128
Period size: 36 Copynumber: 1.9 Consensus size: 38
78511 GTCCTTCGCA
78521 AAAAAAAAACAAAAAAC-AAC-AAAACAAAAAAAAGAG
1 AAAAAAAAACAAAAAACAAACAAAAACAAAAAAAAGAG
78557 AAAAAAAAACAAAAAACAAACAAAAACAAAAAAAA
1 AAAAAAAAACAAAAAACAAACAAAAACAAAAAAAA
78592 CAAAAACAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 17 0.52
37 3 0.09
38 13 0.39
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (38 bp):
AAAAAAAAACAAAAAACAAACAAAAACAAAAAAAAGAG
Found at i:78570 original size:47 final size:46
Alignment explanation
Indices: 78519--78611 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 46
78509 GCGTCCTTCG
* *
78519 CAAAAAAAAAACAAAAA-ACAACAAAACAAAAAAAAGAGAAAAAAAAA
1 CAAAAAAAAAACAAAAACA-AAAAAAACAAAAAAAACA-AAAAAAAAA
* *
78566 CAAAAAACAAACAAAAACAAAAAAAACAAAAACAACAAAAAAAAAA
1 CAAAAAAAAAACAAAAACAAAAAAAACAAAAAAAACAAAAAAAAAA
78612 GGTTCGGATG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
46 9 0.22
47 31 0.76
48 1 0.02
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (46 bp):
CAAAAAAAAAACAAAAACAAAAAAAACAAAAAAAACAAAAAAAAAA
Found at i:78597 original size:36 final size:36
Alignment explanation
Indices: 78521--78607 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 36
78511 GTCCTTCGCA
*
78521 AAAAAAAAACAAAAAACAACAAAACAAAAAAAAGAG
1 AAAAAAAAACAAAAAACAACAAAACAAAAAAAAGAC
78557 AAAAAAAAACAAAAAACAAACAAAA-ACAAAAAAA-AC
1 AAAAAAAAACAAAAAAC-AACAAAACA-AAAAAAAGAC
*
78593 -AAAAACAACAAAAAA
1 AAAAAAAAACAAAAAA
78608 AAAAGGTTCG
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
35 14 0.30
36 19 0.40
37 14 0.30
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (36 bp):
AAAAAAAAACAAAAAACAACAAAACAAAAAAAAGAC
Found at i:78608 original size:36 final size:35
Alignment explanation
Indices: 78520--78608 Score: 105
Period size: 33 Copynumber: 2.6 Consensus size: 35
78510 CGTCCTTCGC
*
78520 AAAAAAAAAACAA-AAAACAACAAAACAAAAAAAA
1 AAAAAAAAAACAACAAAAAAACAAAACAAAAAAAA
* *
78554 GAGAAAAAAA-AAC-AAAAAAC-AAACAAAAACAAA
1 AAAAAAAAAACAACAAAAAAACAAAACAAAAA-AAA
78587 AAAAACAAAAACAACAAAAAAA
1 AAAAA-AAAAACAACAAAAAAA
78609 AAAGGTTCGG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
32 9 0.20
33 14 0.31
34 13 0.29
35 3 0.07
36 6 0.13
ACGTcount: A:0.85, C:0.12, G:0.02, T:0.00
Consensus pattern (35 bp):
AAAAAAAAAACAACAAAAAAACAAAACAAAAAAAA
Found at i:80045 original size:28 final size:27
Alignment explanation
Indices: 80007--80096 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 27
79997 CATTCCTCAC
*
80007 CCTTTTCAAAGTCCATAAGTCAGTGGCA
1 CCTTTTCAAAG-CCACAAGTCAGTGGCA
* *
80035 CCTTTTCAAAGCTTACAAGTTAGTGGCA
1 CCTTTTCAAAGC-CACAAGTCAGTGGCA
* * *
80063 CCGTTTCAAAGCCCACAAGACAATGGCAA
1 CCTTTTCAAAG-CCACAAGTCAGTGGC-A
80092 CCTTT
1 CCTTT
80097 AAAAGCCCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.02
28 43 0.86
29 6 0.12
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (27 bp):
CCTTTTCAAAGCCACAAGTCAGTGGCA
Found at i:80182 original size:49 final size:49
Alignment explanation
Indices: 80124--80454 Score: 344
Period size: 49 Copynumber: 6.7 Consensus size: 49
80114 GGTGGCATCT
* * *
80124 TCTTTAAGTCCAATGTCGCCGACCTTGAATCAACACATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * * *
80173 TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCA
* * ** * *
80225 TCTCTAAGACTGATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
*
80274 TCTTTAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * *
80323 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCA
* ** * *
80375 TCTTTAA-TCCCAATGTTGCTGGCCTTGTCTCAGTACATTGGCA--TTCT
1 TCTTTAAGT-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * * *
80422 TCTTCAAGTCTAATATCGCTGGCCATGAATCAG
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAG
80455 TGCATTGTCA
Statistics
Matches: 232, Mismatches: 42, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
47 26 0.11
48 1 0.00
49 125 0.54
50 2 0.01
51 2 0.01
52 76 0.33
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (49 bp):
TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
Found at i:80267 original size:101 final size:98
Alignment explanation
Indices: 80128--80417 Score: 303
Period size: 101 Copynumber: 2.9 Consensus size: 98
80118 GCATCTTCTT
* * * * *
80128 TAAGTCCAATGTCGCCGACCTTGAATCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
* *
80193 GGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTC
66 GGCCTTGAATCAGCACATTGGCACC-T--TCATCTC
** * * * *
80229 TAAGACTGATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTATCTTTAAGTCGAATGTCGCT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
*
80294 GGCCTTGAATCAGCACATTGGCACCTTCATCTT
66 GGCCTTGAATCAGCACATTGGCACCTTCATCTC
* * * * *
80327 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAA-TCCCAATGT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTTTAAGT-CCAATAT
* ** *
80391 TGCTGGCCTTGTCTCAGTACATTGGCA
62 CGCTGGCCTTGAATCAGCACATTGGCA
80418 TTCTTCTTCA
Statistics
Matches: 158, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
98 40 0.25
99 1 0.01
100 2 0.01
101 115 0.73
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (98 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
GGCCTTGAATCAGCACATTGGCACCTTCATCTC
Found at i:80396 original size:150 final size:148
Alignment explanation
Indices: 80116--80454 Score: 482
Period size: 150 Copynumber: 2.3 Consensus size: 148
80106 CACAAGTTGG
* * *
80116 TGGCA-TCTTCTTTAAGTCCAATGTCGCCGACCTTGAATCAACACATTGGCACCTTCATCTTTAA
1 TGGCATTCTTCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
* **
80180 GTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTCTAAGACTGATGTCGCT
66 GTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTCTAAGACCAATGTCGCT
80245 GGCCTTGAATCAGCACAT
131 GGCCTTGAATCAGCACAT
* *
80263 TGGCATCTTTATCTTTAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 TGGCAT-TCT-TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* ** *
80328 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAATCCCAATGTTG
64 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTCTAAGACCAATGTCG
** *
80393 CTGGCCTTGTCTCAGTACAT
129 CTGGCCTTGAATCAGCACAT
* * * *
80413 TGGCATTCTTCTTCAAGTCTAATATCGCTGGCCATGAATCAG
1 TGGCATTCTTCTTTAAGTCCAATGTCGCTGGCCTTGAATCAG
80455 TGCATTGTCA
Statistics
Matches: 169, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
147 5 0.03
148 29 0.17
149 4 0.02
150 131 0.78
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (148 bp):
TGGCATTCTTCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
GTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTCTAAGACCAATGTCGCT
GGCCTTGAATCAGCACAT
Found at i:80477 original size:99 final size:100
Alignment explanation
Indices: 80124--80454 Score: 275
Period size: 101 Copynumber: 3.3 Consensus size: 100
80114 GGTGGCATCT
* * * * * * *
80124 TCTTTAAGTCCAATGTCGCCGACCTTGAATCAACACATTGGCACC-T--TCATCTTTAAGT-CCA
1 TCTTCAAGTCCAATATCGCTGGCCATGAATCAGCACATTGGCGCCTTCGTCATCTTTAA-TCCCA
* * * * *
80185 ATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCG
65 ATGTCGCTGGCCTTGAATCAGCACATTGGC-ACTTCA
* ** * * **
80222 TCATCTCTAAGACTGATGTCGCTGGCCTTGAATCAGCACATTGGCATCTT--T-ATCTTTAAGT-
1 TC-T-TC-AAGTCCAATATCGCTGGCCATGAATCAGCACATTGGCGCCTTCGTCATCTTTAA-TC
*
80283 CGAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
62 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* * *
80323 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAATCCCAA
1 TCTTCAAGTCCAATATCGCTGGCCATGAATCAGCACATTGGCGCCTTCGTCATCTTTAATCCCAA
* ** * *
80388 TGTTGCTGGCCTTGTCTCAGTACATTGGCA-TTCT
66 TGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
*
80422 TCTTCAAGTCTAATATCGCTGGCCATGAATCAG
1 TCTTCAAGTCCAATATCGCTGGCCATGAATCAG
80455 TGCATTGTCA
Statistics
Matches: 193, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
98 37 0.19
99 35 0.18
100 4 0.02
101 115 0.60
102 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (100 bp):
TCTTCAAGTCCAATATCGCTGGCCATGAATCAGCACATTGGCGCCTTCGTCATCTTTAATCCCAA
TGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
Found at i:81252 original size:32 final size:32
Alignment explanation
Indices: 81206--81268 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
81196 AACAGTAACT
*
81206 GTATCGATACATAAGTGTTGTATCGATACAAC
1 GTATCGATACATAAGTATTGTATCGATACAAC
*
81238 GTATCGATATATAAGTATTGTATCGATACAA
1 GTATCGATACATAAGTATTGTATCGATACAA
81269 TATATTGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (32 bp):
GTATCGATACATAAGTATTGTATCGATACAAC
Found at i:81344 original size:33 final size:33
Alignment explanation
Indices: 81301--81364 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
81291 CAAGGAAATG
81301 TATCGATACATT-ACTCAATGTATCGATACATTA
1 TATCGATACATTGA-TCAATGTATCGATACATTA
* **
81334 TATCGGTACATTGATCTTTGTATCGATACAT
1 TATCGATACATTGATCAATGTATCGATACAT
81365 CTGGGGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.39
Consensus pattern (33 bp):
TATCGATACATTGATCAATGTATCGATACATTA
Found at i:86842 original size:30 final size:30
Alignment explanation
Indices: 86806--86900 Score: 102
Period size: 30 Copynumber: 3.5 Consensus size: 30
86796 TATCTTGAAA
86806 AATGTATCAATACATCTGGGTAAAAGATAG
1 AATGTATCAATACATCTGGGTAAAAGATAG
*
86836 AATGTATCGATACAT-T--G----A-A-A-
1 AATGTATCAATACATCTGGGTAAAAGATAG
86856 AATGTATCAATACATCTGGGTAAAAGATAG
1 AATGTATCAATACATCTGGGTAAAAGATAG
*
86886 AATGTATCGATACAT
1 AATGTATCAATACAT
86901 TAAAAAATGT
Statistics
Matches: 52, Mismatches: 3, Indels: 20
0.69 0.04 0.27
Matches are distributed among these distances:
20 14 0.27
21 2 0.04
22 1 0.02
23 2 0.04
27 2 0.04
28 1 0.02
29 2 0.04
30 28 0.54
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.28
Consensus pattern (30 bp):
AATGTATCAATACATCTGGGTAAAAGATAG
Found at i:86844 original size:50 final size:50
Alignment explanation
Indices: 86787--86930 Score: 236
Period size: 50 Copynumber: 2.9 Consensus size: 50
86777 ACATTCACAC
*
86787 ATGTATCGCTATC-TTGAAAAATGTATCAATACATCTGGGTAAAAGATAGA
1 ATGTATCGATA-CATTGAAAAATGTATCAATACATCTGGGTAAAAGATAGA
86837 ATGTATCGATACATTGAAAAATGTATCAATACATCTGGGTAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCAATACATCTGGGTAAAAGATAGA
* * *
86887 ATGTATCGATACATTAAAAAATGTACCGATACATCTGGGTAAAA
1 ATGTATCGATACATTGAAAAATGTATCAATACATCTGGGTAAAA
86931 ATGTGACTTT
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
49 1 0.01
50 88 0.99
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (50 bp):
ATGTATCGATACATTGAAAAATGTATCAATACATCTGGGTAAAAGATAGA
Found at i:86863 original size:70 final size:71
Alignment explanation
Indices: 86729--86863 Score: 209
Period size: 70 Copynumber: 1.9 Consensus size: 71
86719 TGTCAATACA
* * *
86729 TTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCCATACATTCACACATGTATC
1 TTGAAAAATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCCATACATTCAAAAATGTATC
86794 GCTATC
66 GCTATC
* * *
86800 TTGAAAAATGTATCAATACATCTGGGT-AAAAGATAGAATGTATCGATACATTGAAAAATGTATC
1 TTGAAAAATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCCATACATTCAAAAATGTATC
86864 AATACATCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
70 32 0.55
71 26 0.45
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (71 bp):
TTGAAAAATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCCATACATTCAAAAATGTATC
GCTATC
Found at i:88237 original size:29 final size:29
Alignment explanation
Indices: 87962--89467 Score: 1471
Period size: 28 Copynumber: 52.6 Consensus size: 29
87952 CACCAACTTG
* * * **
87962 TGTGGGCTTCAGAGAAGGTTGCCACCAACT
1 TGTGGGCTT-TGAAAAGGATGCCACTGACT
*
87992 TGTGGGCTTT-AAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
88020 TGTGAGCTTCG-AAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
88048 TGTGAGC-TTCAAAAGGGTGCAACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
88076 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
88104 TGTGGG-TTTCG-AAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAAGGATGCCACTGACT
* * *
88132 TGTGGGCTTT-AAAAGGCTACCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88160 TGTGGGCTTTGAGAGAGGTTGCCACCGACT
1 TGTGGGCTTTGA-AAAGGATGCCACTGACT
* *
88190 TGTGTGCGC-TTAAAGAAGGATGCCACTAACT
1 TGTG-G-GCTTTGAA-AAGGATGCCACTGACT
* *
88221 TGTGGGCTTTGAAAAGGATGCCAATGACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
88250 TGTGGGCTTTG-AAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
88278 TGTGGGCTTTGAAAAGGATACCACTGACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
88307 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
88335 TGTGGGC-TTCAAAAGGGTGCCACTAATT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
88363 TGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88391 TGTGGGCTTTG-AAGGGCTACCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88419 TGTCGGCTTTGAAAGAGGTTGCCACCGACT
1 TGTGGGCTTTGAAA-AGGATGCCACTGACT
* *
88449 TGTGGGCTTT-AAGAAGGATGCCATTGACA
1 TGTGGGCTTTGAA-AAGGATGCCACTGACT
*
88478 TGTGGGCTTTG-AAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
88506 TGTGGGCTTTGAGAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * **
88535 TGTGGGCTTCGAGAGAGGTTACCACCAACT
1 TGTGGGCTTTGA-AAAGGATGCCACTGACT
88565 TGTGGGCTTTGAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
88594 TGTGGGCTTTGAAAAGGATGCCACTGACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
88623 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88651 TGTGGGCTTTGAGAATGATGCCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88680 TGTGGGTTTTGAGAAGTATGCCACTGA-T
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
88708 ATGTGGGTTTTGAAAA-GATGCCAATGACT
1 -TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88737 TATGGGCTTT-CAAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
88765 TGTGGGCTTTGAAAAGGATGCCACTGACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
88794 TATAGGCTTTG-AAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88822 TGTGGGC-TTCAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
88850 TGTGGGCTTTG-AAAGGCTACCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
88878 TGTCGGCTTTGAGAGAGGTTGCCACTAATT
1 TGTGGGCTTTGA-AAAGGATGCCACTGACT
* * ** * *
88908 TGTGAGCTTCG-AAAGGATGTAACTAACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
88936 TGTGGGCTTTG-AAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
88964 TATGGGTTTTGAGAAGGATGCCATTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
88993 TGTGGTCTTTGAGAAGGATGCCACTGA-T
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
89021 TCATGAGCTTTGAAATGGATGCCACTGACA
1 T-GTGGGCTTTGAAAAGGATGCCACTGACT
*
89051 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
89079 TATGGGCTTTGAGAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
89108 TTTGGGCTTTGAGAAGAATGCCACTGA-T
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
89136 ATGT-GGCTTTGAGAAGGATGCCACTGACT
1 -TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
89165 CGTGGGCTTTGAAAAGGATGCCACTGACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
89194 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
89222 TGTGGGCTTTGAGAAGGATGCCA-TCGA-T
1 TGTGGGCTTTGAAAAGGATGCCACT-GACT
* *
89250 ATGTGGGCTTTGAGAAGGATGCTACTGACT
1 -TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
89280 CGTGGGCTTTGAAAAGGATGCCACTGACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
89309 TGTGGGCTTTGAAAA-GATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
89337 TGTAGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
89366 TGTGAGCTTTGAGAAGGATGCCACTGA-T
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
89394 ATGTGGGCGTTG-AAAGGATACCACTAACT
1 -TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
89423 TGTGGACTTT-AAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
89451 TATGGGCTTTGAAAAGG
1 TGTGGGCTTTGAAAAGG
89468 GTCATATTGA
Statistics
Matches: 1231, Mismatches: 196, Indels: 99
0.81 0.13 0.06
Matches are distributed among these distances:
27 11 0.01
28 595 0.48
29 506 0.41
30 97 0.08
31 20 0.02
32 2 0.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGGATGCCACTGACT
Found at i:88316 original size:86 final size:86
Alignment explanation
Indices: 87962--89464 Score: 1514
Period size: 86 Copynumber: 17.5 Consensus size: 86
87952 CACCAACTTG
* * * ** * * *
87962 TGTGGGCTTCAGAGAAGGTTGCCACCAACTTGTGGGCTTTAAAAGGATGCCACTGATTTGTGAGC
1 TGTGGGCTT-TGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* *
88027 TTCG-AAAGGGTGCCACTAACT
65 TTTGAAAAGGATGCCACTAACT
* * * * * *
88048 TGTGAGC-TTCAAAAGGGTGCAACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGG-T
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
88111 TTCG-AAAGGGTGCCACTAACT
66 TT-GAAAAGGATGCCACTAACT
* * * * *
88132 TGTGGGCTTT-AAAAGGCTACCACTAACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTGTGTG
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGA-A-AGGATGCCACTGACTTGTG-G
*
88196 CGC-TTAAAGAAGGATGCCACTAACT
63 -GCTTTGAA-AAGGATGCCACTAACT
* *
88221 TGTGGGCTTTGAAAAGGATGCCAATGACATGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * *
88286 TTGAAAAGGATACCACTGACA
66 TTGAAAAGGATGCCACTAACT
* ** * * *
88307 TGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTAATTTGTGGGCT
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
88371 TT-AAAAGGGTGCCACTAACT
66 TTGAAAAGGATGCCACTAACT
* * * * * *
88391 TGTGGGCTTTG-AAGGGCTACCACTGACTTGTCGGCTTTGAAAGAGGTTGCCACCGACTTGTGGG
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTG-AA-AGGATGCCACTGACTTGTGGG
* * *
88455 CTTT-AAGAAGGATGCCATTGACA
64 CTTTGAA-AAGGATGCCACTAACT
* *
88478 TGTGGGCTTTG-AAAGGATGTCACTGACTTGTGGGCTTTGAGAAGAATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGC
* * * * *
88542 TTCGAGAGAGGTTACCACCAACT
65 TTTGA-AAAGGATGCCACTAACT
*
88565 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGGC
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGC
88630 TTTG-AAAGGATGCCACTAACT
65 TTTGAAAAGGATGCCACTAACT
* * * * *
88651 TGTGGGCTTTGAGAATGATGCCATTGACTTGTGGGTTTTGAGAAGTATGCCACTGA-TATGTGGG
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACT-TGTGGG
* * *
88715 TTTTGAAAA-GATGCCAATGACT
64 CTTTGAAAAGGATGCCACTAACT
* * * * * *
88737 TATGGGCTTT-CAAAGGATGTCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATATAGGC
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGC
*
88801 TTTG-AAAGGGTGCCACTAACT
65 TTTGAAAAGGATGCCACTAACT
* * * * * * *
88822 TGTGGGC-TTCAAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGCTACCACTAACTTGTCGGCT
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * *
88886 TTGAGAGAGGTTGCCACTAATT
66 TTGA-AAAGGATGCCACTAACT
* * ** * * * * *
88908 TGTGAGCTTCG-AAAGGATGTAACTAACATGTGGGCTTTGAAAGGATGCCACTCACTTATGGGTT
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
88972 TTGAGAAGGATGCCATTAACT
66 TTGAAAAGGATGCCACTAACT
* * * * *
88993 TGTGGTCTTTGAGAAGGATGCCACTGA-TTCATGAGCTTTGAAATGGATGCCACTGACATGTGGG
1 TGTGGGCTTTGAAAAGGATGCCACTGACTT-GTGGGCTTTGAAA-GGATGCCACTGACTTGTGGG
89057 CTTTG-AAAGGATGCCACTAACT
64 CTTTGAAAAGGATGCCACTAACT
* * * * *
89079 TATGGGCTTTGAGAAGAATGCCACTGACTTTTGGGCTTTGAGAAGAATGCCACTGA-TATGT-GG
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACT-TGTGGG
* *
89142 CTTTGAGAAGGATGCCACTGACT
64 CTTTGAAAAGGATGCCACTAACT
* * *
89165 CGTGGGCTTTGAAAAGGATGCCACTGACATGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
89230 TTGAGAAGGATGCCA-TCGA-T
66 TTGAAAAGGATGCCACT-AACT
* * * *
89250 ATGTGGGCTTTGAGAAGGATGCTACTGACTCGTGGGCTTTGAAAAGGATGCCACTGACATGTGGG
1 -TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGG
89315 CTTTGAAAA-GATGCCACTAACT
64 CTTTGAAAAGGATGCCACTAACT
* * *
89337 TGTAGGCTTTGAGAAGGATGCCACTGACTTGTGAGCTTTGAGAAGGATGCCACTGA-TATGTGGG
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACT-TGTGGG
* *
89401 CGTTG-AAAGGATACCACTAACT
64 CTTTGAAAAGGATGCCACTAACT
* * * *
89423 TGTGGACTTT-AAAAAGATGCCACTAACTTATGGGCTTTGAAA
1 TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAA
89465 AGGGTCATAT
Statistics
Matches: 1178, Mismatches: 193, Indels: 94
0.80 0.13 0.06
Matches are distributed among these distances:
83 2 0.00
84 171 0.15
85 213 0.18
86 533 0.45
87 134 0.11
88 73 0.06
89 27 0.02
90 25 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (86 bp):
TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
TTGAAAAGGATGCCACTAACT
Found at i:89504 original size:26 final size:26
Alignment explanation
Indices: 89474--89547 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
89464 AAGGGTCATA
89474 TTGACGAAAATTTCTTGACAAAGTT-
1 TTGACGAAAATTTCTTGACAAAGTTC
*
89499 TCTGAC-AAACA-TTCTCGACAGAAGTTC
1 T-TGACGAAA-ATTTCTTGACA-AAGTTC
*
89526 TTGACGATAATTTCTTGACAAA
1 TTGACGAAAATTTCTTGACAAA
89548 TGGCAAAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
25 12 0.30
26 17 0.43
27 11 0.28
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (26 bp):
TTGACGAAAATTTCTTGACAAAGTTC
Found at i:89506 original size:12 final size:13
Alignment explanation
Indices: 89474--89547 Score: 55
Period size: 13 Copynumber: 5.6 Consensus size: 13
89464 AAGGGTCATA
*
89474 TTGACGAAAATTTC
1 TTGAC-AAAGTTTC
89488 TTGACAAAGTTTC
1 TTGACAAAGTTTC
**
89501 -TGACAAACATTC
1 TTGACAAAGTTTC
*
89513 TCGACAGAAG-TTC
1 TTGACA-AAGTTTC
89526 TTGACGATAA-TTTC
1 TTGAC-A-AAGTTTC
89540 TTGACAAA
1 TTGACAAA
89548 TGGCAAAAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
12 12 0.24
13 19 0.39
14 18 0.37
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (13 bp):
TTGACAAAGTTTC
Found at i:102994 original size:18 final size:19
Alignment explanation
Indices: 102954--102993 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
102944 GAAAAATTAC
*
102954 AAATCGTCTAGGGGGTCAA
1 AAATCATCTAGGGGGTCAA
102973 AAATCATCTAGGGGGTCAA
1 AAATCATCTAGGGGGTCAA
102992 AA
1 AA
102994 TGACCTGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.20
Consensus pattern (19 bp):
AAATCATCTAGGGGGTCAA
Found at i:104623 original size:20 final size:19
Alignment explanation
Indices: 104598--104672 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
104588 TTTTAACTAG
104598 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAA-A
* * *
104618 ATGTATCGATACAATCATAC
1 ATGTATCGATACATTGA-AA
*
104638 ATTTATCGATACATTGAAAA
1 ATGTATCGATACATTG-AAA
104658 ATGTATCGATACATT
1 ATGTATCGATACATT
104673 TGGGTAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACATTGAAA
Found at i:105874 original size:29 final size:29
Alignment explanation
Indices: 105599--106505 Score: 703
Period size: 28 Copynumber: 31.6 Consensus size: 29
105589 CACCAACTTG
* * **
105599 TGTGGGCTTTAGAGAAGGTTGCCACCAACT
1 TGTGGGCTTT-GAAAAGGATGCCACTGACT
* *
105629 TGTGGGCTTT-AAAAAGATGCCACTGATT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
105657 TGTGAGCTTCG-AAAGGGTGCCACT-ACCT
1 TGTGGGCTTTGAAAAGGATGCCACTGA-CT
* * * *
105685 TGTGGGCTTT-AAGAGGGTGCCACTAACC
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
**
105713 TGTGGGCTTCAAAAAGG-TGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
105741 TATGGGCTTCG-AAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
105769 TGTGCGCTTT-AAAAAGCTACCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
105797 TGTGGGCTTTGAGAGAGGTTGCCACCGACTT
1 TGTGGGCTTTGA-AAAGGATGCCACTGAC-T
* * *
105828 GTGTGGGC-TTAAAGAAGGATTCCACTGACC
1 -TGTGGGCTTTGAA-AAGGATGCCACTGACT
* *
105858 TATGGGCTTTGAAAAGGATGCCA-TGGACA
1 TGTGGGCTTTGAAAAGGATGCCACT-GACT
* * *
105887 TGTGGACTCTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
105915 TGTGGGCTTTGAAAAGGATGCCAC-CAAT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
105943 ATGTGGGCTTTG-AAAGGGTGCCACTAACT
1 -TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
105972 TGTGGGC-TTCAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
106000 TATGGGC-TTCAAAAGGGTGCCACTAATT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
106028 TATGGGC-TTCAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
106056 TGTGGACTTTG-AAAGGCTACCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
106084 TGTCGGCTTTGAGAGAGGTTGCCACTGACT
1 TGTGGGCTTTGA-AAAGGATGCCACTGACT
* *
106114 TGTCGGCTTT-AAGAGAGGTTGCCACTGACT
1 TGTGGGCTTTGAA-A-AGGATGCCACTGACT
*
106144 TGTGGGCTTT-AAGAAAGATGCCACTGACT
1 TGTGGGCTTTGAA-AAGGATGCCACTGACT
* * * * *
106173 CGTGGGGTTTGAAAAAGATGCCACTAACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
106202 TATGGGCTTTG-AAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
106230 TGTGAGCTTT-AAGAAGGATTCCTCTGACT
1 TGTGGGCTTTGAA-AAGGATGCCACTGACT
* *
106259 TGTGGGCTTTGAAAGAGGTTGCCACCGACT
1 TGTGGGCTTTGAAA-AGGATGCCACTGACT
*
106289 TGTGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
** * * *
106318 CATGGGCTTTGAAAAGAATGCCACTAACA
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
106347 TGTGGGCTTTG-AAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
106375 TATGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
106404 TATGGGCTTTGAGAAA-GATGCCACT-AAT
1 TGTGGGCTTTGA-AAAGGATGCCACTGACT
* *
106432 GTGTGAGCTTTG-AAAGGATGCCACTTACT
1 -TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
106461 TATGGGCTTTG-GAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
106489 TGTGGGCTTTGAAAAGG
1 TGTGGGCTTTGAAAAGG
106506 GTCGTACTGA
Statistics
Matches: 715, Mismatches: 127, Indels: 71
0.78 0.14 0.08
Matches are distributed among these distances:
27 11 0.02
28 350 0.49
29 225 0.31
30 107 0.15
31 15 0.02
32 7 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGGATGCCACTGACT
Found at i:105933 original size:86 final size:86
Alignment explanation
Indices: 105601--106502 Score: 602
Period size: 86 Copynumber: 10.5 Consensus size: 86
105591 CCAACTTGTG
* * ** * * * * * *
105601 TGGGCTTTAGAGAAGGTTGCCACCAACTTGTGGGCTTTAAAAAGATGCCACTGATTTGTGAGCTT
1 TGGGCTTT-GAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
105666 CG-AAAGGGTGCCACT-ACCTTG
65 TGAAAAGGATGCCACTGA-CTTA
* * * * * ** * *
105687 TGGGCTTT-AAGAGGGTGCCACTAACCTGTGGGCTTCAAAAAGG-TGCCACTGACTTATGGGCTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTT-TGAAAGGATGCCACTAACTTGTGGGCTT
* * * *
105750 CG-AAAGGGTGCCACTAACTTG
65 TGAAAAGGATGCCACTGACTTA
* * * * * * * **
105771 TGCGCTTT-AAAAAGCTACCATTGACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTGTGTGGG
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGA-A-AGGATGCCACTAAC-T-TGTGGG
* * *
105835 C-TTAAAGAAGGATTCCACTGACCTA
62 CTTTGAA-AAGGATGCCACTGACTTA
* *
105860 TGGGCTTTGAAAAGGATGCCA-TGGACATGTGGACTCTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGGGCTTTGAAAAGGATGCCACT-GACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
105924 TGAAAAGGATGCCAC-CAATATG
65 TGAAAAGGATGCCACTGACT-TA
* * * ** * *
105946 TGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTAACTTATGGGC-TT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGGCTTT
* * * *
106009 CAAAAGGGTGCCACTAATTTA
66 GAAAAGGATGCCACTGACTTA
* * * * * * * *
106030 TGGGC-TTCAAAAGGGTACCACTAACTTGTGGACTTTGAAAGGCTACCACTGACTTGTCGGCTTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGGCTTT
* * *
106094 GAGAGAGGTTGCCACTGACTTG
66 GA-AAAGGATGCCACTGACTTA
* * * * *
106116 TCGGCTTT-AAGAGAGGTTGCCACTGACTTGTGGGCTTTAAGAAA-GATGCCACTGACTCGTGGG
1 TGGGCTTTGAA-A-AGGATGCCACTGACTTGTGGACTTT--GAAAGGATGCCACTAACTTGTGGG
* * * *
106179 GTTTGAAAAAGATGCCACTAACATA
62 CTTTGAAAAGGATGCCACTGACTTA
* * * *
106204 TGGGCTTTG-AAAGGATGCCACTGACTTGT-GAGCTTTAAGAAGGATTCCTCTGACTTGTGGGCT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGA-CTTTGA-AAGGATGCCACTAACTTGTGGGCT
* * *
106267 TTGAAAGAGGTTGCCACCGACTTG
64 TTGAAA-AGGATGCCACTGACTTA
* ** * * *
106291 TGGGCTTTGAGAAGGATGCCACTGACTCATGGGCTTTGAAAAGAATGCCACTAACATGTGGGCTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTG-AAAGGATGCCACTAACTTGTGGGCTT
*
106356 TG-AAAGGATGCCATTGACTTA
65 TGAAAAGGATGCCACTGACTTA
* * * * *
106377 TGGGCTTTGAGAAGGATGCCACTGACTTATGGGCTTTGAGAAAGATGCCACTAA-TGTGTGAGCT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGA-AAGGATGCCACTAACT-TGTGGGCT
*
106441 TTG-AAAGGATGCCACTTACTTA
64 TTGAAAAGGATGCCACTGACTTA
* * *
106463 TGGGCTTTG-GAAGGATGTCACTGACTTGTGGGCTTTGAAA
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAA
106503 AGGGTCGTAC
Statistics
Matches: 655, Mismatches: 128, Indels: 68
0.77 0.15 0.08
Matches are distributed among these distances:
83 3 0.00
84 152 0.23
85 87 0.13
86 207 0.32
87 33 0.05
88 103 0.16
89 44 0.07
90 26 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (86 bp):
TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGGCTTT
GAAAAGGATGCCACTGACTTA
Found at i:106195 original size:287 final size:282
Alignment explanation
Indices: 105599--106505 Score: 923
Period size: 287 Copynumber: 3.2 Consensus size: 282
105589 CACCAACTTG
* * * * *
105599 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGGGCTTT-AAAAAGATGCCACTGATTTGTGAG
1 TGTGGGCTTT-GA-AAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCAC-CAATTGTGAG
* * * * * *
105663 CTTCGAAAGGGTGCCACTACCTTGTGGGCTTTAAGAGGGTGCCACTAACCTGTGGGCTTCAAAAA
63 CTTTGAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTAACTTGTGGGCTTCAAAAG
* * *
105728 GGTGCCACTGACTTATGGGCTTCGAAAGGGTGCCACTAACTTGTGCGCTTTAAAAAGCTACCATT
128 GGTGCCACTGACTTATGGGCTTCAAAAGGGTGCCACTAACTTGTG-GCTTTGAAAGGCTACCATT
* *
105793 GACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTGTGTGGGCTTAAAGAAGGATT-CCACTGAC
192 GACTTGTGGGCTTTGAGAGAGGTTGCCACTGAC-T-TGTGGGCTTTAAGAAGG-TTGCCACTGAC
* * *
105857 CTATGGGCTTTGAA-AAGGATGCCA-TGGAC
254 TTGTGGGCTTT-AAGAAAGATGCCACT-GAC
* * *
105886 ATGTGGACTCTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACCAATATGTGGGC
1 -TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACCAAT-TGTGAGC
*
105951 TTTGAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTAACTTATGGGCTTCAAAAGG
64 TTTGAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGG
* * * *
106016 GTGCCACTAATTTATGGGCTTCAAAAGGGTACCACTAACTTGTGGACTTTGAAAGGCTACCACTG
129 GTGCCACTGACTTATGGGCTTCAAAAGGGTGCCACTAACTTGTGG-CTTTGAAAGGCTACCATTG
* *
106081 ACTTGTCGGCTTTGAGAGAGGTTGCCACTGACTTGTCGGCTTTAAGAGAGGTTGCCACTGACTTG
193 ACTTGTGGGCTTTGAGAGAGGTTGCCACTGACTTGTGGGCTTTAAGA-AGGTTGCCACTGACTTG
106146 TGGGCTTTAAGAAAGATGCCACTGAC
257 TGGGCTTTAAGAAAGATGCCACTGAC
* * * * * *
106172 TCGTGGGGTTTGAAAAAGATGCCACTAACATATGGGCTTTG-AAAGGATGCCACTGACTTGTGAG
1 T-GTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCAC-CAATTGTGAG
* * * * * * * ** *
106236 CTTTAAGAAGGATTCCTCTGACTTGTGGGCTTTGAAAGAGGTTGCCACCGACTTGTGGGCTTTGA
63 CTTTGA-AAGGGTGCCACTAACTTGTGGGC-TTCAAA-AGGGTGCCACTAACTTGTGGGC-TTCA
* * * * ** * * *
106301 GAAGGATGCCACTGACTCATGGGCTTTGAAAAGAATGCCACTAACATGTGGGCTTTGAAAGGATG
124 AAAGGGTGCCACTGACTTATGGGC-TTCAAAAGGGTGCCACTAACTTGT-GGCTTTGAAAGGCTA
* * * * * *
106366 CCATTGACTTATGGGCTTTGAGA-AGGATGCCACTGACTTATGGGCTTTGAGAAAGATGCCACT-
187 CCATTGACTTGTGGGCTTTGAGAGAGGTTGCCACTGACTTGTGGGCTTTAAGAAGGTTGCCACTG
* * *
106429 AATGTGTGAGCTTT--GAAAGGATGCCACTTAC
252 ACT-TGTGGGCTTTAAGAAA-GATGCCACTGAC
* * * *
106460 TTATGGGCTTTGGAAGGATGTCACTGACTTGTGGGCTTTGAAAAGG
1 -TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGG
106506 GTCGTACTGA
Statistics
Matches: 518, Mismatches: 81, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
285 17 0.03
286 89 0.17
287 237 0.46
288 39 0.08
289 37 0.07
290 47 0.09
291 50 0.10
292 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (282 bp):
TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACCAATTGTGAGCTT
TGAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGT
GCCACTGACTTATGGGCTTCAAAAGGGTGCCACTAACTTGTGGCTTTGAAAGGCTACCATTGACT
TGTGGGCTTTGAGAGAGGTTGCCACTGACTTGTGGGCTTTAAGAAGGTTGCCACTGACTTGTGGG
CTTTAAGAAAGATGCCACTGAC
Found at i:106294 original size:145 final size:145
Alignment explanation
Indices: 105618--106502 Score: 594
Period size: 145 Copynumber: 6.2 Consensus size: 145
105608 TAGAGAAGGT
* * * * * * * *
105618 TGCCACCAACTTGTGGGCTTTAAAAAGATGCCACTGATTTGTGAGCTTCGA-AAGGGTGCCACT-
1 TGCCACTAACATGTGGGCTTTGAAAGGATGCCACTGACTTGTG-GCTTTGAGAAGGATTCCACTG
** * * * *
105681 ACCTTGTGGGCTTT-AAGAG-GG-TGCCACTAACCTGTGGGCTTCAA-AAAGGTGCCACTGACTT
65 A-CTTGTGGGCTTTGAAGAGAGGTTGCCACCGACTTGTGGGCTTTAAGAAAGATGCCACTGACTC
* **
105742 ATGGGCTTCG-AAAGGG
129 ATGGGCTTTGAAAAGAA
* * * * * * *
105758 TGCCACTAACTTGTGCGCTTTAAAAAGCTACCATTGACTTGTGGGCTTTGAGAGAGG-TTGCCAC
1 TGCCACTAACATGTGGGCTTTGAAAGGATGCCACTGACTTGT-GGCTTTGAGA-AGGATT-CCAC
* * * * * *
105822 CGACTTGTGTGGGC-TTAAAGA-AGGATT-CCACTGACCTATGGGCTTTGAA-AAGGATGCCA-T
63 TGAC-T-TGTGGGCTTTGAAGAGAGG-TTGCCACCGACTTGTGGGCTTT-AAGAAAGATGCCACT
* *
105882 GGA--CATGTGGACTCTG-AAAGGA
124 -GACTCATG-GG-CTTTGAAAAGAA
* * * * *
105904 TGCCACTAACTTGTGGGCTTTGAAAAGGATGCCAC-CAATATGTGGGCTTTGA-AAGGGTGCCAC
1 TGCCACTAACATGTGGGCTTTG-AAAGGATGCCACTGACT-TGT-GGCTTTGAGAAGGATTCCAC
* * * ** * * * * * *
105967 TAACTTGTGGGC-TTCAA-A-AGGGTGCCACTAACTTATGGGCTTCAA-AAGGGTGCCACTAATT
63 TGACTTGTGGGCTTTGAAGAGAGGTTGCCACCGACTTGTGGGCTTTAAGAAAGATGCCACTGACT
* * **
106028 TATGGGC-TTCAAAAGGG
128 CATGGGCTTTGAAAAGAA
* * * * *
106045 TACCACTAACTTGTGGACTTTGAAAGGCTACCACTGACTTGTCGGCTTTGAGAGAGG-TTGCCAC
1 TGCCACTAACATGTGGGCTTTGAAAGGATGCCACTGACTTGT-GGCTTTGAGA-AGGATT-CCAC
* *
106109 TGACTTGTCGGCTTT-AAGAGAGGTTGCCACTGACTTGTGGGCTTTAAGAAAGATGCCACTGACT
63 TGACTTGTGGGCTTTGAAGAGAGGTTGCCACCGACTTGTGGGCTTTAAGAAAGATGCCACTGACT
* *
106173 CGTGGGGTTTGAAAA-AGA
128 CATGGGCTTTGAAAAGA-A
* * *
106191 TGCCACTAACATATGGGCTTTGAAAGGATGCCACTGACTTGTGAGCTTTAAGAAGGATTCCTCTG
1 TGCCACTAACATGTGGGCTTTGAAAGGATGCCACTGACTTGTG-GCTTTGAGAAGGATTCCACTG
* *
106256 ACTTGTGGGCTTTGAA-AGAGGTTGCCACCGACTTGTGGGCTTTGAGAAGGATGCCACTGACTCA
65 ACTTGTGGGCTTTGAAGAGAGGTTGCCACCGACTTGTGGGCTTTAAGAAAGATGCCACTGACTCA
106320 TGGGCTTTGAAAAGAA
130 TGGGCTTTGAAAAGAA
* * *
106336 TGCCACTAACATGTGGGCTTTGAAAGGATGCCATTGACTTATGGGCTTTGAGAAGGATGCCACTG
1 TGCCACTAACATGTGGGCTTTGAAAGGATGCCACTGACTTGT-GGCTTTGAGAAGGATTCCACTG
* * * * * * *
106401 ACTTATGGGCTTTG-AGA-AAGATGCCA-CTAATGTGTGAGCTTT--GAAAGGATGCCACTTACT
65 ACTTGTGGGCTTTGAAGAGAGGTTGCCACCGACT-TGTGGGCTTTAAGAAA-GATGCCACTGACT
* * *
106461 TATGGGCTTTG-GAAGGA
128 CATGGGCTTTGAAAAGAA
* * *
106478 TGTCACTGACTTGTGGGCTTTGAAA
1 TGCCACTAACATGTGGGCTTTGAAA
106503 AGGGTCGTAC
Statistics
Matches: 606, Mismatches: 98, Indels: 80
0.77 0.12 0.10
Matches are distributed among these distances:
140 64 0.11
141 46 0.08
142 79 0.13
143 46 0.08
144 57 0.09
145 193 0.32
146 101 0.17
147 20 0.03
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (145 bp):
TGCCACTAACATGTGGGCTTTGAAAGGATGCCACTGACTTGTGGCTTTGAGAAGGATTCCACTGA
CTTGTGGGCTTTGAAGAGAGGTTGCCACCGACTTGTGGGCTTTAAGAAAGATGCCACTGACTCAT
GGGCTTTGAAAAGAA
Found at i:119594 original size:20 final size:20
Alignment explanation
Indices: 119569--119608 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
119559 CTCATTCTCA
119569 CCTTTTTTT-TCTTTTTTGTT
1 CCTTTTTTTAT-TTTTTTGTT
119589 CCTTTTTTTATTTTTTTGTT
1 CCTTTTTTTATTTTTTTGTT
119609 AGTTTATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.03, C:0.12, G:0.05, T:0.80
Consensus pattern (20 bp):
CCTTTTTTTATTTTTTTGTT
Found at i:120079 original size:30 final size:33
Alignment explanation
Indices: 120018--120079 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
120008 CATTGGGTTT
*
120018 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCAACTTGTGTGGACTTTAG
120051 AGAA-GGTTGCCACCAAC-T-TGTGGACTTTA
1 AGAAGGGTTGCCACCAACTTGTGTGGACTTTA
120080 AAAGGACGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 10 0.36
31 1 0.04
32 13 0.46
33 4 0.14
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCAACTTGTGTGGACTTTAG
Found at i:120127 original size:28 final size:28
Alignment explanation
Indices: 120020--120909 Score: 325
Period size: 28 Copynumber: 30.9 Consensus size: 28
120010 TTGGGTTTAG
* *
120020 AAGGGTTGCCACCAACTTGTGTGGGCTTTAGA
1 AAGGG-TGCCACTAAC-T-TGTGGGCTTCA-A
* * * *
120052 GAAGGTTGCCACCAACTTGTGGACTTTAA
1 -AAGGGTGCCACTAACTTGTGGGCTTCAA
** * * * * *
120081 AAGGACGCTACTGATTTGTGAGCTTCGA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
*
120109 AAGGGTGCCACAAACTTGTGGGCTTCAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* **
120137 AAGGGTGCCACTGACTTGTGGGCTTTGA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
120165 AAGGGTGCCACTAACTTGTGGGCTTCAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * * *
120193 AAGGCTACCACTGACTTGTGGGCTTTGAGA
1 AAGGGTGCCACTAACTTGTGGGC-TTCA-A
* * ** *
120223 GAGGTTGCCACCGACTTGTGTGGGCTTAAA
1 AAGGGTGCCACTAAC-T-TGTGGGCTTCAA
* * * **
120253 GAAGGATGCCACTGACATGTGGGCTTTGA
1 -AAGGGTGCCACTAACTTGTGGGCTTCAA
* * * *
120282 AAGGATGCTACTGACTTGTGGGCTTTGAA
1 AAGGGTGCCACTAACTTGTGGGC-TTCAA
* * * **
120311 AAGGATGCCACTAACATGTGGACTTTGA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * *
120339 AAGAGTGCCACTAATTTATGGGCTTCAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* *
120367 AAGGGTGCTACTAACTTTTGGGCTTCAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * * *
120395 AAGGGTGCCATTGACATGTGGGCTTTAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * * * *
120423 AAGGCTACCACTGACTTGTGAGCTTTGAGA
1 AAGGGTGCCACTAACTTGTGGGC-TTCA-A
* ** ** * * * *
120453 GAGATTGCCACCGACTTGAGGGATTTGAG
1 AAGGGTGCCACTAACTTGTGGG-CTTCAA
* * * ** *
120482 AAGGATACCGCTAACTCATGGGCTTTGAA
1 AAGGGTGCCACTAACTTGTGGGC-TTCAA
* * * *
120511 AAGGATGCCACTGACATGTGGGCTTTAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * *
120539 AAGGATGCCACTGACTTGT-GGCTTTGAGA
1 AAGGGTGCCACTAACTTGTGGGC-TTCA-A
* * *
120568 AA-GATGCCACTGACTTGTGGGCTTTGAGA
1 AAGGGTGCCACTAACTTGTGGGC-TTCA-A
* * * * *
120597 GAGGTTGCCA-TCGACTTGTGGGCTTTGAG
1 AAGGGTGCCACT-AACTTGTGGGC-TTCAA
* * * *
120626 AAGGATGCCACTGACTCGTGGGCTTTGAA
1 AAGGGTGCCACTAACTTGTGGGC-TTCAA
* * **
120655 AAGGATGCCAC-AGACATGTGGGCTTTGA
1 AAGGGTGCCACTA-ACTTGTGGGCTTCAA
* * **
120683 AAGGATGCCACTGACTTGTGGGCTTTGA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * *
120711 GAGGGATGCCA-TGACTTGTGGGCTTTGAGA
1 AAGGG-TGCCACTAACTTGTGGGC-TTCA-A
* * * * * *
120741 GAGGTTGCCATTGACTTGTGGGCTTTGAG
1 AAGGGTGCCACTAACTTGTGGGC-TTCAA
* * * * *
120770 AAGGATGCCAATGACTCGTGGGCTTTGAA
1 AAGGGTGCCACTAACTTGTGGGC-TTCAA
* * * * **
120799 AAGGATGTCACTGACATGTGGGCTTTGA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
* * * *
120827 AAGGATGCCACTGACTTGTGGGCTTTGAG
1 AAGGGTGCCACTAACTTGTGGGC-TTCAA
* * * *
120856 AAGGATGCCACTGACTTATGGGCTTTAA
1 AAGGGTGCCACTAACTTGTGGGCTTCAA
**
120884 GAAGAATGCCACTAA-TATGTGGGCTT
1 -AAGGGTGCCACTAACT-TGTGGGCTT
120910 TGAAAGGATG
Statistics
Matches: 684, Mismatches: 148, Indels: 54
0.77 0.17 0.06
Matches are distributed among these distances:
27 3 0.00
28 327 0.48
29 228 0.33
30 88 0.13
31 17 0.02
32 17 0.02
33 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (28 bp):
AAGGGTGCCACTAACTTGTGGGCTTCAA
Found at i:120621 original size:230 final size:227
Alignment explanation
Indices: 120039--120883 Score: 871
Period size: 230 Copynumber: 3.7 Consensus size: 227
120029 CACCAACTTG
* * ** * * * *
120039 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGGACTTT-AAAAGGACGCTACTGATTTGTGAG
1 TGTGGGCTTT-GAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTG-G
* * * *
120103 CTTCGAAAGGGTGCCACAAACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTTTG-AAA
64 CTTTGAAAAGATGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAA
* * * *
120167 GGGTGCCACTAACTTGTGGGCTTCAAAAGGCTACCACTGACTTGTGGGCTTTGAGAGAGGTTGCC
129 GGATGCCACTGACTTGTGGGCTTTAAAAGGCTACCACTGACTTGTGGGCTTTGAGAGAGATTGCC
**
120232 ACCGACTTGTGTGGGCTTAAAGAAGGATGCCACTGAC
194 ACCGAC-T-TGTGGGCTTTGAGAAGGATGCC-CTGAC
* * *
120269 ATGTGGGCTTTG-AAAGGATGCTACTGACTTGTGGGCTTTGAAAAGGATGCCACTAACATGTGGA
1 -TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGG-
* * * * * *
120333 CTTTG-AAAGAGTGCCACTAATTTATGGGCTTCAAAAGGGTGCTACTAACTTTTGGGC-TTCAAA
64 CTTTGAAAAGA-TGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTTTGAAA
* * * *
120396 AGGGTGCCATTGACATGTGGGCTTTAAAAGGCTACCACTGACTTGTGAGCTTTGAGAGAGATTGC
128 AGGATGCCACTGACTTGTGGGCTTTAAAAGGCTACCACTGACTTGTGGGCTTTGAGAGAGATTGC
* * * *
120461 CACCGACTTGAGGGATTTGAGAAGGATACCGCTAAC
193 CACCGACTTGTGGGCTTTGAGAAGGATGCC-CTGAC
* *
120497 TCATGGGCTTTGAAAAGGATGCCACTGACATGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGC
1 T-GTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGC
* * * *
120561 TTTGAGAAAGATGCCACTGACTTGTGGGCTTTGAGAGAGGTTGCCA-TCGACTTGTGGGCTTTGA
65 TTTGA-AAAGATGCCACTAACTTGTGGGC-TTCA-AAAGGGTGCCACT-GACTTGTGGGCTTTGA
* * * * * * *
120625 GAAGGATGCCACTGACTCGTGGGCTTTGAAAAGGATGCCACAGACATGTGGGCTTTGAAAG-GA-
126 AAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGCTACCACTGACTTGTGGGCTTTGAGAGAGAT
* * *
120688 TGCCACTGACTTGTGGGCTTTGAGAGGGATGCCATGAC
190 TGCCACCGACTTGTGGGCTTTGAGAAGGATGCCCTGAC
* * * * * *
120726 TTGTGGGCTTTGAGAGAGGTTGCCATTGACTTGTGGGCTTTGAGAAGGATGCCAATGACTCGTGG
1 -TGTGGGCTTTGA-AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGT-G
* * * ** * *
120791 GCTTTGAAAAGGATGTCACTGACATGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAG
63 GCTTTGAAAA-GATGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTTTGAA
*
120856 AAGGATGCCACTGACTTATGGGCTTTAA
127 AAGGATGCCACTGACTTGTGGGCTTTAA
120884 GAAGAATGCC
Statistics
Matches: 512, Mismatches: 83, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
227 6 0.01
228 66 0.13
229 77 0.15
230 249 0.49
231 61 0.12
232 53 0.10
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (227 bp):
TGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGCT
TTGAAAAGATGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG
ATGCCACTGACTTGTGGGCTTTAAAAGGCTACCACTGACTTGTGGGCTTTGAGAGAGATTGCCAC
CGACTTGTGGGCTTTGAGAAGGATGCCCTGAC
Found at i:120905 original size:144 final size:144
Alignment explanation
Indices: 120039--120943 Score: 877
Period size: 144 Copynumber: 6.3 Consensus size: 144
120029 CACCAACTTG
* ** * * * ** *
120039 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGGACTTT-AAAAGGACGCTACTGATTTGTGAG
1 TGTGGGCTTT-GAGAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGG
** * ** * * *
120103 CTTCGAAAGGGTGCCACAAACTTGTGGGC-TTCAAAAGGGTGCCACTGACTTGTGGGCTTTGA-A
65 CTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGA
*
120166 -AGGGTGCCACTAACT
130 GAGGTTGCCACTAA-T
* * * * * * * *
120181 TGTGGGC-TTCAAAAGGCTACCACTGACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTGTGTG
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGA-AAAGGATGCCACTGAC--ATGTG
* * *
120245 GGCTTAAAGAAGGATGCCACTGACATGTGGGCTTTGA-AAGGATGCTACTGACTTGTGGGCTTTG
63 GGCTTTAA-AAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTG
* * *
120309 A-AAAGGATGCCACTAACA
127 AGAGAGGTTGCCACTAA-T
* * * * * * * * * *
120327 TGTGGACTTTGA-AA-GAGTGCCACTAATTTATGGGC-TTCAAAAGGGTGCTACTAACTTTTGGG
1 TGTGGGCTTTGAGAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGG
* * * * * * * *
120389 CTTCAAAAGGGTGCCATTGACATGTGGGCTTT-AAAAGGCTACCACTGACTTGTGAGCTTTGAGA
65 CTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGA
* * *
120453 GAGATTGCCACCGACT
130 GAGGTTGCCA-CTAAT
* * * * * **
120469 TGAGGGATTTGAGAAGGATACCGCTAACTCATGGGCTTTGAAAAGGATGCCACTGACATGTGGGC
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGGC
*
120534 TTTAAAAGGATGCCACTGACTTGT-GGCTTTGAGAAAGATGCCACTGACTTGTGGGCTTTGAGAG
66 TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAG
* *
120598 AGGTTGCCATCGACT
131 AGGTTGCCA-CTAAT
* *
120613 TGTGGGCTTTGAGAAGGATGCCACTGACTCGTGGGCTTTGAAAAGGATGCCACAGACATGTGGGC
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGGC
* *
120678 TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAGAGGGATGCCA-TGACTTGTGGGCTTTGAGAG
66 TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAG
* *
120742 AGGTTGCCATTGACT
131 AGGTTGCCACT-AAT
* * *
120757 TGTGGGCTTTGAGAAGGATGCCAATGACTCGTGGGCTTTGAAAAGGATGTCACTGACATGTGGGC
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGGC
* * *
120822 TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTATGGGCTTTAAGA-
66 TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAG
**
120886 AGAATGCCACTAAT
131 AGGTTGCCACTAAT
* * *
120900 ATGTGGGCTTTGA-AAGGATGTCGCTGACTTGTGGGCATTGAAAA
1 -TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAAAA
120944 AGGTCGTATT
Statistics
Matches: 638, Mismatches: 105, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
140 23 0.04
141 51 0.08
142 44 0.07
143 52 0.08
144 343 0.54
145 84 0.13
146 38 0.06
147 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (144 bp):
TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACATGTGGGC
TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAG
AGGTTGCCACTAAT
Found at i:122232 original size:18 final size:18
Alignment explanation
Indices: 122190--122233 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
122180 AGGACCCTTC
* *
122190 TTTTTTGTTTATTTGTTT
1 TTTTTTATTTATTTGGTT
*
122208 TTTTTTATTTTTTTGGTT
1 TTTTTTATTTATTTGGTT
122226 TTTTTTAT
1 TTTTTTAT
122234 GAAACACGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.07, C:0.00, G:0.09, T:0.84
Consensus pattern (18 bp):
TTTTTTATTTATTTGGTT
Found at i:128424 original size:666 final size:665
Alignment explanation
Indices: 127148--128478 Score: 2250
Period size: 666 Copynumber: 2.0 Consensus size: 665
127138 GTGCTTGATA
* * *
127148 AACTTAAGAAACTCTATCGCTTAATCTTCTTTCACCATTTTTTTGACTTTTTCTAGCTCTGGGTT
1 AACTTAAGAAACTCTATCGCTTAATCTTCTTTCACCATTTCTTTAACTTTTTCTAGCTATGGGTT
* * *
127213 CTTCACTTGTTTTTGAATGGTACCAGTGCTTGGAGATGCATCAACCCTCTGTTTTTCTTGAAGTA
66 CTTCACTTATTTATGAATGGTACCAGCGCTTGGAGATGCATCAACCCTCTGTTTTTCTTGAAGTA
* *
127278 GGGGAGCATAACACCTAACACCACGAGTTAGGTGACTAACCCTTGACAGTTCCATCACAGTAGCC
131 GGGGAGCATAACACCTAACACCACGAGTTAGGTGACTAACCCTTGACAGCTCCATCACAGCAGCC
*
127343 GAGGGAGTTTGTTCTCCAATTATCACTACCTGATTCCGTACCTCCAAAGGACTGCTTTGTTGCTC
196 GAGGGAGTTTGTTCTCCAATTATCACTACCTGATTCCGTACCTCCAAAGGACTGCTTTGTTGATC
* * *
127408 TTGTATAAGAATGGTTTAGGTACCTTCACGACTAAAATTGGTGTCGGTGTCAAAGAACTAGCCTC
261 TTGTATAAGAATGGTTTAGGTACCTCCACAACTAAAATTGGTGTAGGTGTCAAAGAACTAGCCTC
* * *
127473 GAAACTTGACTTGCCAAAAAGAATTAGGGGTCGGTTCCTCCCGCAAGGTGGCTACATTGCTTTGT
326 GAAAATTGACTTGCCAAAAAGAATTAAGGGTCGATTCCTCCCGCAAGGTGGCTACATTGCTTTGT
127538 CTCCTATCATGTTGATGGATTCGACAGCAAGCATGGCTTCATGATAGAATTCTATCTAGCCTTCA
391 CTCCTATCATGTTGATGGATTCGACAGCAAGCATGGCTTCATGATAGAATTCTATCTAGCCTTCA
*
127603 TCCATCATTCTCTGAACCATGGCCTTAAACTCCTTGCATGTTTGTAAAGTATGACCTACAACAGT
456 TCCATCATTCTCTGAACCATGGCCCTAAACTCCTTGCATGTTTGTAAAGTATGACCTACAACAGT
*
127668 ATGGAAGTCATAGAAATTGTCGAGCTTATCTTCCAACTTCTTCGCTGCATTAAGCAATCCGACTT
521 ATGGAAGTCACAGAAATTGTCGAGCTTATCTTCCAACTTCTTCGCTGCATTAAGCAATCCGACTT
*
127733 GACTCAATGCTTCGCAAACTAAGAACATTAGCATCCTTACTTCTTCTATGCTTATCTTAACTTTA
586 GACTCAATGCTTCCCAAACTAAGAACATTAGCATCCTTACTTCTTCTATGCTTATCTTAACTTTA
127798 TATTTATTCTCGATG
651 TATTTATTCTCGATG
* * * * *
127813 AACTTGAGAAACTCTGTGGCTTCATCTTCTTTCACCGTTTCTTTAACTTTTTCTAGCTATGGGTT
1 AACTTAAGAAACTCTATCGCTTAATCTTCTTTCACCATTTCTTTAACTTTTTCTAGCTATGGGTT
* * * *
127878 CTTCGCTTATTTATGAATGGTACCGGCGCTTGGAGATGCATCAAGCCTCTGTTTTTCTTGAAGTG
66 CTTCACTTATTTATGAATGGTACCAGCGCTTGGAGATGCATCAACCCTCTGTTTTTCTTGAAGTA
* *
127943 GGGGAGCATAACACCTACCACCACGGGTTAGGTGACTAACCCTTGACAGCTCCATCACAGCAGCC
131 GGGGAGCATAACACCTAACACCACGAGTTAGGTGACTAACCCTTGACAGCTCCATCACAGCAGCC
* *
128008 GAGGGAGTTTGTTCTTCAATTATCACTACCTGATTCTCGTACCTCCAAGGGACTGCTTTGTTGAT
196 GAGGGAGTTTGTTCTCCAATTATCACTACCTGATTC-CGTACCTCCAAAGGACTGCTTTGTTGAT
* *
128073 CTTGTATGAGAATGGTTTAGGTACCTCCACAACTAAAATTGGTGTAGGTGTCGAAGAACTAGCCT
260 CTTGTATAAGAATGGTTTAGGTACCTCCACAACTAAAATTGGTGTAGGTGTCAAAGAACTAGCCT
* * *
128138 CGAAAATTGACTTGCCAAAAAGAATTAAGGGTCGATTCCTCCCGTAAGGTGGTTGCATTGCTTTG
325 CGAAAATTGACTTGCCAAAAAGAATTAAGGGTCGATTCCTCCCGCAAGGTGGCTACATTGCTTTG
* * *
128203 TCTCCTATCATGTTGATGGATTCGGCTGCAAGCATGGCTTCATGATAGAATTCTATCTGGCCTTC
390 TCTCCTATCATGTTGATGGATTCGACAGCAAGCATGGCTTCATGATAGAATTCTATCTAGCCTTC
*
128268 ATCCATCATTCTCTGAACCATGGCCCTAAACTCCTTGCATGTTTGT-AAGATATGATCTACAACA
455 ATCCATCATTCTCTGAACCATGGCCCTAAACTCCTTGCATGTTTGTAAAG-TATGACCTACAACA
* * *
128332 GTGTGGAAGTCACAGAAGTTGTCGAGCTTATCTTCCAACTTTTTCGCTGCATTAAGCAATCCGAC
519 GTATGGAAGTCACAGAAATTGTCGAGCTTATCTTCCAACTTCTTCGCTGCATTAAGCAATCCGAC
128397 TTGACTCAATGCTTCCCAAACTAAGAACATTAGCATCCTTACTTCTTCTATGCTTATCTTAACTT
584 TTGACTCAATGCTTCCCAAACTAAGAACATTAGCATCCTTACTTCTTCTATGCTTATCTTAACTT
128462 TATATTTATTCTCGATG
649 TATATTTATTCTCGATG
128479 CCAATCATGT
Statistics
Matches: 621, Mismatches: 43, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
665 214 0.34
666 407 0.66
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (665 bp):
AACTTAAGAAACTCTATCGCTTAATCTTCTTTCACCATTTCTTTAACTTTTTCTAGCTATGGGTT
CTTCACTTATTTATGAATGGTACCAGCGCTTGGAGATGCATCAACCCTCTGTTTTTCTTGAAGTA
GGGGAGCATAACACCTAACACCACGAGTTAGGTGACTAACCCTTGACAGCTCCATCACAGCAGCC
GAGGGAGTTTGTTCTCCAATTATCACTACCTGATTCCGTACCTCCAAAGGACTGCTTTGTTGATC
TTGTATAAGAATGGTTTAGGTACCTCCACAACTAAAATTGGTGTAGGTGTCAAAGAACTAGCCTC
GAAAATTGACTTGCCAAAAAGAATTAAGGGTCGATTCCTCCCGCAAGGTGGCTACATTGCTTTGT
CTCCTATCATGTTGATGGATTCGACAGCAAGCATGGCTTCATGATAGAATTCTATCTAGCCTTCA
TCCATCATTCTCTGAACCATGGCCCTAAACTCCTTGCATGTTTGTAAAGTATGACCTACAACAGT
ATGGAAGTCACAGAAATTGTCGAGCTTATCTTCCAACTTCTTCGCTGCATTAAGCAATCCGACTT
GACTCAATGCTTCCCAAACTAAGAACATTAGCATCCTTACTTCTTCTATGCTTATCTTAACTTTA
TATTTATTCTCGATG
Found at i:130675 original size:79 final size:78
Alignment explanation
Indices: 130581--130830 Score: 297
Period size: 79 Copynumber: 3.2 Consensus size: 78
130571 AATAACGGGG
* * *
130581 TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGA-TTAG
1 TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAAT-ATTTA-
130645 GAAATAAAATCGAGA
64 GAAATAAAATCGAGA
* ** * *
130660 TTGGAGTATCCCCTTGGAGGTAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAG
1 TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATA-TTTAG
* *
130725 AAATAAAATCGGGG
65 AAATAAAATCGAGA
* * *
130739 TTGGAGTATCCCC-TCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTA
1 TTGGAGTATCCCCTTGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATA-TTTA
* * *
130803 GAAATAAAACCGGGG
64 GAAATAAAATCGAGA
130818 TTGGAGTATCCCC
1 TTGGAGTATCCCC
130831 GATTGTGAAA
Statistics
Matches: 153, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
78 2 0.01
79 148 0.97
80 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (78 bp):
TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTAGA
AATAAAATCGAGA
Found at i:130827 original size:51 final size:51
Alignment explanation
Indices: 130762--130881 Score: 170
Period size: 51 Copynumber: 2.4 Consensus size: 51
130752 TCAGAAATAA
* *
130762 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAAT-ATTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGA-TTTAGAAATAAAAC
* * *
130813 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTAGAAATAAAAC
*
130864 CGGGATTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
130882 TCTGAAATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
51 61 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGATTTAGAAATAAAAC
Found at i:130854 original size:130 final size:130
Alignment explanation
Indices: 130683--131087 Score: 663
Period size: 130 Copynumber: 3.1 Consensus size: 130
130673 TTGGAGGTAA
* * *
130683 CGGGGTTGGAGTATCCCCGATTATGAGAAATTA-AT-ATTTTAGAAATAAAATCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATAGATGA-TTTAGAAATAAAATCGGGATTGGAGT
130746 ATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAA
64 ATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAA
130811 AC
129 AC
*
130813 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAAATCGGGATTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATAGATGATTTAGAAATAAAATCGGGATTGGAGTAT
* * *
130878 CCCCTCTGAAATAACAGGGTTGGAGTATCCGCGATTATGAGAAATTAATATTTTAGAAATAAAAC
66 CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAAC
130943 CGGGGTTGGAGTATCCCCGATTGTGAAAAATAGATGATTTAGAAATAAAATCGGGATTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATAGATGATTTAGAAATAAAATCGGGATTGGAGTAT
* * * *
131008 CCCCTCGGAAATAACGGGGTTAGAGTAT-CCCGATTATGAGAAATTAATATTTTAGAAATAAGAT
66 CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAAC
*
131072 CGGGGTTAGAGTATCC
1 CGGGGTTGGAGTATCC
131088 ACTCAGAAAT
Statistics
Matches: 258, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
129 52 0.20
130 205 0.79
131 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (130 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATAGATGATTTAGAAATAAAATCGGGATTGGAGTAT
CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAAC
Found at i:130898 original size:79 final size:79
Alignment explanation
Indices: 130815--130960 Score: 213
Period size: 79 Copynumber: 1.8 Consensus size: 79
130805 AATAAAACCG
* * *
130815 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGA-TTTAGAAATAAAATCGGGATTGGAGTATC
1 GGGTTGGAGTATCCCCGATTATGAAAAATCAAT-ATTTTAGAAATAAAACCGGGATTGGAGTATC
130879 CCCTCTGAAATAACA
65 CCCTCTGAAATAACA
* * * *
130894 GGGTTGGAGTATCCGCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAACCGGGATTGGAGTATCC
130959 CC
66 CC
130961 GATTGTGAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.02
79 58 0.98
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAACCGGGATTGGAGTATCC
CCTCTGAAATAACA
Found at i:130958 original size:51 final size:51
Alignment explanation
Indices: 130894--131011 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
130884 TGAAATAACA
* *
130894 GGGTTGGAGTATCCGCGATTATGAGAAATTA-AT-ATTTTAGAAATAAAACCG
1 GGGTTGGAGTATCCCCGATTATGA-AAAATAGATGA-TTTAGAAATAAAACCG
* *
130945 GGGTTGGAGTATCCCCGATTGTGAAAAATAGATGATTTAGAAATAAAATCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATAGATGATTTAGAAATAAAACCG
*
130996 GGATTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
131012 TCGGAAATAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 5 0.08
51 54 0.90
52 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATAGATGATTTAGAAATAAAACCG
Found at i:131028 original size:209 final size:200
Alignment explanation
Indices: 130576--131186 Score: 588
Period size: 209 Copynumber: 3.0 Consensus size: 200
130566 GAGATAATAA
* * *
130576 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGA
1 CGGGATTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGA
* **
130641 -TTAGGAAATAAAATCGAGATTGGAGTATCCCCT-TGGAGGTAACGGGGTTGGAGTATCCCCGAT
66 TTTA-GAAATAAAATCGGGATTGGAGTATCCCCTCT-GAAATAACGGGGTTGGAGTAT-CCCGAT
* * *
130704 TATGAGAAATTAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTT
128 TATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGAGTT
* *
130769 GGAGTATC
193 GAAATATC
** * *** *
130777 CCCGATTATGAGAAATTAAT-ATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAAA
1 CGGGA-T-TG-G--AGT-ATCCCCTTGGAAAT--AA-CGGGGTTGGAGTATCCCCGATTGTGAAA
*
130841 AATCGATGATTTAGAAATAAAATCGGGATTGGAGTATCCCCTCTGAAATAACAGGGTTGGAGTAT
57 AATCGATGATTTAGAAATAAAATCGGGATTGGAGTATCCCCTCTGAAATAACGGGGTTGGAGTAT
*
130906 CCGCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAAA
122 CC-CGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC-----TCAAA
* *
130971 AATAGA-TGATTTAGAAATAAAAT-
181 AATA-ACGGAGTT-GAAAT---ATC
* * * * **
130994 CGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTAT-CCCGATTATGAGAAATTAAT-A
1 CGGGATTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGA
* * * * * *
131057 TTTTAGAAATAAGATCGGGGTTAGAGTATCCACTCAGAAATAACGGGGTTGAAGTATCCCTGATT
66 -TTTAGAAATAAAATCGGGATTGGAGTATCCCCTCTGAAATAACGGGGTTGGAGTATCCC-GATT
* ** ** *
131122 ATAAGAAATTAATATTTTAGAAATAAAACCTAGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
129 ATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGAGTTG
131187 GAGTATCCCC
Statistics
Matches: 333, Mismatches: 51, Indels: 51
0.77 0.12 0.12
Matches are distributed among these distances:
201 2 0.01
202 3 0.01
203 11 0.03
204 1 0.00
206 8 0.02
207 4 0.01
208 119 0.36
209 146 0.44
210 6 0.02
211 2 0.01
212 8 0.02
214 11 0.03
215 6 0.02
216 1 0.00
217 3 0.01
218 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (200 bp):
CGGGATTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGA
TTTAGAAATAAAATCGGGATTGGAGTATCCCCTCTGAAATAACGGGGTTGGAGTATCCCGATTAT
GAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGAGTTGAA
ATATC
Found at i:131066 original size:78 final size:77
Alignment explanation
Indices: 130943--131195 Score: 330
Period size: 79 Copynumber: 3.2 Consensus size: 77
130933 GAAATAAAAC
* *
130943 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATAGATGA-TTTAGAAATAAAATCGGGATTGGAGT
1 CGGGGTTGGAGTAT-CCCGATTATGAGAAATTA-AT-ATTTTAGAAATAAAATCGGG-TTGGAGT
131006 ATCCCCTCGGAAATAA
62 ATCCCCTCGGAAATAA
* * *
131022 CGGGGTTAGAGTATCCCGATTATGAGAAATTAATATTTTAGAAATAAGATCGGGGTTAGAGTATC
1 CGGGGTTGGAGTATCCCGATTATGAGAAATTAATATTTTAGAAATAAAATC-GGGTTGGAGTATC
* *
131087 CACTCAGAAATAA
65 CCCTCGGAAATAA
* * * *
131100 CGGGGTTGAAGTATCCCTGATTATAAGAAATTAATATTTTAGAAATAAAACCTAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCC-GATTATGAGAAATTAATATTTTAGAAATAAAATC-GGGTTGGAGTAT
131165 CCCCTCGGAAATAA
64 CCCCTCGGAAATAA
131179 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
131196 CGATGATTAA
Statistics
Matches: 152, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
77 1 0.01
78 61 0.40
79 90 0.59
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (77 bp):
CGGGGTTGGAGTATCCCGATTATGAGAAATTAATATTTTAGAAATAAAATCGGGTTGGAGTATCC
CCTCGGAAATAA
Found at i:131319 original size:51 final size:51
Alignment explanation
Indices: 131206--131443 Score: 298
Period size: 51 Copynumber: 4.6 Consensus size: 51
131196 CGATGATTAA
* * * *
131206 CGGGGTTAGAATATCCCCGATTGT-GAAAATTTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAA-TTGGTG-TTTTGAAAATAAAAC
* * *
131258 CGGAGTTGGAGTATCCTCGATTATGGAAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
* *
131309 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTCGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
* * * * *
131360 CAGAGTTGGAGTATCCCCAATTGTGGAAAATTAGTGTTTTAAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
* * *
131411 CGGGGTTGGAGTACCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTG
131444 AGAAACTTAA
Statistics
Matches: 159, Mismatches: 26, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
51 129 0.81
52 25 0.16
53 5 0.03
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
Found at i:131388 original size:102 final size:103
Alignment explanation
Indices: 131206--131443 Score: 336
Period size: 102 Copynumber: 2.3 Consensus size: 103
131196 CGATGATTAA
* * * * *
131206 CGGGGTTAGAATATCCCCGATTGT-GAAAATTTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAA-TTGGTGTTTTCGAAAATAAAATCAGAGTTGGAGT
* * * *
131270 ATCCTCGATTATGGAAAATTGGTGTTTTGAAAATAAAAC
65 ATCCCCAATTATGGAAAATTAGTGTTTTAAAAATAAAAC
131309 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTG-TTTCGAAAATAAAATCAGAGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTCGAAAATAAAATCAGAGTTGGAGTA
*
131373 TCCCCAATTGTGGAAAATTAGTGTTTTAAAAATAAAAC
66 TCCCCAATTATGGAAAATTAGTGTTTTAAAAATAAAAC
* * *
131411 CGGGGTTGGAGTACCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTG
131444 AGAAACTTAA
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
102 88 0.73
103 28 0.23
104 5 0.04
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (103 bp):
CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTCGAAAATAAAATCAGAGTTGGAGTA
TCCCCAATTATGGAAAATTAGTGTTTTAAAAATAAAAC
Found at i:139330 original size:21 final size:21
Alignment explanation
Indices: 139289--139332 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
139279 AAAATAATGG
*
139289 GAATGAACAACAAGAATAAAA
1 GAATGAACAACAACAATAAAA
* *
139310 GAATGAACATCAATCAAAAAAA
1 GAATGAACAACAA-CAATAAAA
139332 G
1 G
139333 TGGCCCTTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.64, C:0.11, G:0.14, T:0.11
Consensus pattern (21 bp):
GAATGAACAACAACAATAAAA
Found at i:143619 original size:20 final size:20
Alignment explanation
Indices: 143575--143649 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
143565 AAAAAGATAG
* *
143575 AATGTATCTATACA-TCGAAG
1 AATGTATCGATACATTC-AAA
*
143595 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
143615 CATGTATTGATACATTGAAA
1 AATGTATCGATACATTCAAA
*
143635 AATGTATCAATACAT
1 AATGTATCGATACAT
143650 CTGGGTAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:146713 original size:23 final size:22
Alignment explanation
Indices: 146669--146729 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 22
146659 TATTAATTAT
*
146669 TTTTAAATATTATTTTTTATTTTTA
1 TTTTAAAT-TTA-ATTTTA-TTTTA
146694 TTTTAAATTTAATTTTATTTTA
1 TTTTAAATTTAATTTTATTTTA
146716 TTTTAAAATTTAAT
1 TTTT-AAATTTAAT
146730 AAAATAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
22 9 0.26
23 14 0.41
24 3 0.09
25 8 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTAAATTTAATTTTATTTTA
Found at i:147129 original size:18 final size:17
Alignment explanation
Indices: 147104--147147 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
147094 TTTCATTTTC
147104 TTTAATTTT-TTCAATATT
1 TTTAATTTTGTT-AA-ATT
*
147122 TTTTATTTTGTTAAATT
1 TTTAATTTTGTTAAATT
147139 TTTAATTTT
1 TTTAATTTT
147148 AAATTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 11 0.48
18 10 0.43
19 2 0.09
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTAATTTTGTTAAATT
Found at i:148145 original size:24 final size:26
Alignment explanation
Indices: 148108--148158 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
148098 CTTTTTTTAT
*
148108 AAAAAATATCTAAT-TTAAAAATTAA
1 AAAAAATATATAATATTAAAAATTAA
*
148133 AAAAAAT-TATAATATTAAAATTTAA
1 AAAAAATATATAATATTAAAAATTAA
148158 A
1 A
148159 TTTCATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
AAAAAATATATAATATTAAAAATTAA
Found at i:149247 original size:16 final size:17
Alignment explanation
Indices: 149221--149252 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
149211 TTAAAAAATA
149221 TTTAAAGTTAATTTAAT
1 TTTAAAGTTAATTTAAT
149238 TTTAAA-TTAATTTAA
1 TTTAAAGTTAATTTAA
149253 GTGAATTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAAAGTTAATTTAAT
Found at i:151452 original size:361 final size:361
Alignment explanation
Indices: 150788--151506 Score: 1438
Period size: 361 Copynumber: 2.0 Consensus size: 361
150778 CTAGGCAGAG
150788 CTGGGTTTCAAGCAATGGGGTTGAAGTGTTTGAGTCAAGCAAGGATGATGCTTTCTGTTTACGGG
1 CTGGGTTTCAAGCAATGGGGTTGAAGTGTTTGAGTCAAGCAAGGATGATGCTTTCTGTTTACGGG
150853 TGTGACGGTTACACTCTTGGCAGCGAGAAGGGGTGTATCCACCTTGGGTGGAAAGGCAGGCCTAT
66 TGTGACGGTTACACTCTTGGCAGCGAGAAGGGGTGTATCCACCTTGGGTGGAAAGGCAGGCCTAT
150918 AATGCTGGCATCTGCGTGGCAACTGCACAATGCTGCTTCTTCATCCTCCTAGCATCTTGTTTTGG
131 AATGCTGGCATCTGCGTGGCAACTGCACAATGCTGCTTCTTCATCCTCCTAGCATCTTGTTTTGG
150983 ACCCACATCGGCCCAAGGCATTCATTATTATATTATTGGTTAGGCATTCACATTTATTACACTAA
196 ACCCACATCGGCCCAAGGCATTCATTATTATATTATTGGTTAGGCATTCACATTTATTACACTAA
151048 TTTTAGAAAAATAAGATAAAATTATTTTCTTAGGGACAGAGTCACAATATAAGCATGCCCAATGG
261 TTTTAGAAAAATAAGATAAAATTATTTTCTTAGGGACAGAGTCACAATATAAGCATGCCCAATGG
151113 CAGTAGCAAGCAATTTCATTGTCTGAGTAATTTTAT
326 CAGTAGCAAGCAATTTCATTGTCTGAGTAATTTTAT
151149 CTGGGTTTCAAGCAATGGGGTTGAAGTGTTTGAGTCAAGCAAGGATGATGCTTTCTGTTTACGGG
1 CTGGGTTTCAAGCAATGGGGTTGAAGTGTTTGAGTCAAGCAAGGATGATGCTTTCTGTTTACGGG
151214 TGTGACGGTTACACTCTTGGCAGCGAGAAGGGGTGTATCCACCTTGGGTGGAAAGGCAGGCCTAT
66 TGTGACGGTTACACTCTTGGCAGCGAGAAGGGGTGTATCCACCTTGGGTGGAAAGGCAGGCCTAT
151279 AATGCTGGCATCTGCGTGGCAACTGCACAATGCTGCTTCTTCATCCTCCTAGCATCTTGTTTTGG
131 AATGCTGGCATCTGCGTGGCAACTGCACAATGCTGCTTCTTCATCCTCCTAGCATCTTGTTTTGG
151344 ACCCACATCGGCCCAAGGCATTCATTATTATATTATTGGTTAGGCATTCACATTTATTACACTAA
196 ACCCACATCGGCCCAAGGCATTCATTATTATATTATTGGTTAGGCATTCACATTTATTACACTAA
151409 TTTTAGAAAAATAAGATAAAATTATTTTCTTAGGGACAGAGTCACAATATAAGCATGCCCAATGG
261 TTTTAGAAAAATAAGATAAAATTATTTTCTTAGGGACAGAGTCACAATATAAGCATGCCCAATGG
151474 CAGTAGCAAGCAATTTCATTGTCTGAGTAATTT
326 CAGTAGCAAGCAATTTCATTGTCTGAGTAATTT
151507 CACTGTTTTG
Statistics
Matches: 358, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
361 358 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (361 bp):
CTGGGTTTCAAGCAATGGGGTTGAAGTGTTTGAGTCAAGCAAGGATGATGCTTTCTGTTTACGGG
TGTGACGGTTACACTCTTGGCAGCGAGAAGGGGTGTATCCACCTTGGGTGGAAAGGCAGGCCTAT
AATGCTGGCATCTGCGTGGCAACTGCACAATGCTGCTTCTTCATCCTCCTAGCATCTTGTTTTGG
ACCCACATCGGCCCAAGGCATTCATTATTATATTATTGGTTAGGCATTCACATTTATTACACTAA
TTTTAGAAAAATAAGATAAAATTATTTTCTTAGGGACAGAGTCACAATATAAGCATGCCCAATGG
CAGTAGCAAGCAATTTCATTGTCTGAGTAATTTTAT
Found at i:151847 original size:5 final size:5
Alignment explanation
Indices: 151837--151863 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
151827 GGTTCTATTG
151837 AACCA AACCA AACCA AACCA AACCA AA
1 AACCA AACCA AACCA AACCA AACCA AA
151864 TTCTGCCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.37, G:0.00, T:0.00
Consensus pattern (5 bp):
AACCA
Found at i:153601 original size:18 final size:17
Alignment explanation
Indices: 153574--153612 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
153564 TATGCATGTT
153574 TATAATACATACACATA
1 TATAATACATACACATA
*
153591 TATACATACATACATATA
1 TATA-ATACATACACATA
153609 TATA
1 TATA
153613 TATATATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.33
Consensus pattern (17 bp):
TATAATACATACACATA
Found at i:153925 original size:6 final size:6
Alignment explanation
Indices: 153914--153963 Score: 73
Period size: 6 Copynumber: 8.2 Consensus size: 6
153904 GCACCCAAAC
* *
153914 TAGTTT TAGTTT TAGTTT TTGTTT TAGTTT TAGCTT TAGTTT TAGATTT
1 TAGTTT TAGTTT TAGTTT TAGTTT TAGTTT TAGTTT TAGTTT TAG-TTT
153963 T
1 T
153964 CACTTCAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
6 35 0.90
7 4 0.10
ACGTcount: A:0.16, C:0.02, G:0.16, T:0.66
Consensus pattern (6 bp):
TAGTTT
Found at i:156421 original size:19 final size:19
Alignment explanation
Indices: 156397--156433 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
156387 GTTTATAATG
156397 AGAAACAAATACTGAATCC
1 AGAAACAAATACTGAATCC
*
156416 AGAAACAGATACTGAATC
1 AGAAACAAATACTGAATC
156434 TAAACATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (19 bp):
AGAAACAAATACTGAATCC
Done.