Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold369
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1106593
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 4 of 6
Found at i:673748 original size:20 final size:20
Alignment explanation
Indices: 673720--673794 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
673710 TTTTACCTTG
673720 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
673740 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
673760 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
673780 ATGTATCGATACATT
1 ATGTATCGATACATT
673795 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:673787 original size:40 final size:39
Alignment explanation
Indices: 673720--673797 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
673710 TTTTACCTTG
* *
673720 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
673760 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
673798 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:677670 original size:21 final size:21
Alignment explanation
Indices: 677637--677681 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
677627 TTGCAAGTTG
*
677637 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
677659 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
677679 AAA
1 AAA
677682 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:679504 original size:15 final size:15
Alignment explanation
Indices: 679484--679514 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
679474 TAAAAATGTC
*
679484 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
679499 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
679514 C
1 C
679515 TAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:681603 original size:13 final size:13
Alignment explanation
Indices: 681585--681610 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
681575 ACATTTTTCT
681585 TTGTATCGATACA
1 TTGTATCGATACA
681598 TTGTATCGATACA
1 TTGTATCGATACA
681611 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:681774 original size:20 final size:20
Alignment explanation
Indices: 681731--681776 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
681721 AAATCTTTTG
681731 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
681752 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
681772 CAAAA
1 CAAAA
681777 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:684066 original size:20 final size:20
Alignment explanation
Indices: 684041--684094 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
684031 AAAACCCTTA
684041 AAAGTATCGATACACAATT-C
1 AAAGTATCGATACA-AATTGC
*
684061 AAAGTATCGATACAAGTTGC
1 AAAGTATCGATACAAATTGC
*
684081 AATGTATCGATACA
1 AAAGTATCGATACA
684095 TGAAAAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 3 0.10
20 28 0.90
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.26
Consensus pattern (20 bp):
AAAGTATCGATACAAATTGC
Found at i:684152 original size:19 final size:19
Alignment explanation
Indices: 684130--684167 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
684120 TTGGCAGTAG
*
684130 CCAAATTTGTATCGATACA
1 CCAAATATGTATCGATACA
*
684149 CCAAGTATGTATCGATACA
1 CCAAATATGTATCGATACA
684168 ATGTATCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (19 bp):
CCAAATATGTATCGATACA
Found at i:684173 original size:13 final size:13
Alignment explanation
Indices: 684155--684180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
684145 TACACCAAGT
684155 ATGTATCGATACA
1 ATGTATCGATACA
684168 ATGTATCGATACA
1 ATGTATCGATACA
684181 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:685936 original size:476 final size:475
Alignment explanation
Indices: 684933--690789 Score: 7370
Period size: 476 Copynumber: 12.4 Consensus size: 475
684923 TAAGCTTTCA
* * *
684933 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTACGGAAAATA
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * * *
684998 AGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAG-ATA
66 AGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT-
*** * * *
685061 ATGTTTATACCACCAAATCACAAAATAAATGAAGATCCTTACTAGAATCCGTGTTTGTCTCTTTT
130 ATGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTT
* * *
685126 GAGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCCTGCGAAACCAAAGCAT
195 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCAT
*
685191 CAATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
260 CAATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGATT
*
685256 TGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAACGGTGGAA
325 AGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATC-AATAACGGTGGAA
** * * * *
685320 GGAAAAGCTTCTC-TTGTAACACCAATGCATCAATGTCAAGTTTCCTAATAAAGGGAATGCGTTT
389 AAAAAAGCTTCTCTTTG-AA-ACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
*
685384 TTGGTTCCTAATCTTGAAAAG-AT
452 TTGGTTCCCAATCTTGAAAAGAAT
* * * *
685407 AGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAACTTTGATTTTAAGGAAAAT
1 A-GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAAT
* * * * *
685472 AAGGTAATGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACATTTATCCTAATGAGGATAAT
65 AAGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
* * * * **
685537 ATGTTTATAATGCCTAACCACAAAATGAAT-AATGATCCTTACAAGAATCCATGTTTGACGCGCT
130 ATGTTTATAATGCCTAATCACAAAATGAATGAA-GATCCTTACTAGAATCCATGTTTGTCTCTTT
* **
685601 CGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
194 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
** * ** *
685666 TCAATAAT-GTGTATCCTTATGGGAAGACTTTGTTTATGCTAACTAATCCTGAAACGAATGGGGA
259 TCAAT-ATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGA
* * * *
685730 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATCAGTAACGGTGGA
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
* *
685795 AAAAAAAGCTTCTCTTTCGAAACCAAAGCATCAATGTCATGTACCCTAATGAAGGGAATGT-TTT
388 AAAAAAAGCTTCTCTTT-GAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* *
685859 GTTCGTTCCCAATCTTGAAAGGAAT
452 -TTGGTTCCCAATCTTGAAAAGAAT
* * *
685884 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAAGTTTGATTTTAAGGAAAATA
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * * * *
685949 AGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTA
66 AGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAATA
*** * * *
686013 TGTTTATAGCACCAAATCACAAAATGAATGAAGATCCTTGCTTGAATCCATGTTTGTCTCTTTTG
131 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTG
* *
686078 AGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATC
196 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATC
* *
686143 AATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTT
261 AATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGATTA
*
686208 GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAATGGT-GAAA
326 GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATC-AATAACGGTGGAAA
* *
686271 AGAAAAGCTTCTC-TTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAATGTGTTT
390 A-AAAAGCTTCTCTTTG-AA-ACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
**
686335 TTGGTTCCTGATCTTGAAAAG-AT
452 TTGGTTCCCAATCTTGAAAAGAAT
* * * * *
686358 AGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAACTTCGATTTTAAGGAAAAT
1 A-GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAAT
* * * *
686423 AAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACATTTATCCTAATGAGGATAAT
65 AAGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
* * * **
686488 ATGTTTATAATGCCTAACCACAAAATGAAT-AATGATCCTTACAAGAATCCATGTTTGACTCGCT
130 ATGTTTATAATGCCTAATCACAAAATGAATGAA-GATCCTTACTAGAATCCATGTTTGTCTCTTT
* *
686552 TGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
194 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
** * ** * *
686617 TCAATAAT-GTGTATCCTTATGGGAAGACTTTGTTTATGCTAACTAATGCTGAAACGAATGGGGA
259 TCAAT-ATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGA
* * *
686681 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATCAATAACGGTGGA
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
* * * * *
686746 AAAAAAAGCTTTTCTTTCGACACCAAAGCATCAATGTCATGTACCCTAATGAAGGGAATGTTTTT
388 AAAAAAAGCTTCTCTTT-GAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
** *
686811 TTCATTCCCAATCTTGAAAGGAAT
452 TTGGTTCCCAATCTTGAAAAGAAT
* *
686835 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * * * *
686900 AGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTAT-CTAATGAGGAGATTA
66 AGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAATA
*** * * *
686963 TGTTTATAGCACCAAATCACAAAATAAATGAAGATCCTTACTAGAATCCGTGTTTGTCTCTTTTG
131 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTG
* * *
687028 AGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCCTGCGAAACCAAAGCATC
196 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATC
* *
687093 AATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTT
261 AATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGATTA
*
687158 GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAACGGTGGAAG
326 GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATC-AATAACGGTGGAAA
* * * * * *
687222 GAAAAGCTTCTC-TTGTAACACCAATGCATCAATGTCAAGTTTCCTAATAAAGAGAATGCGTTTT
390 AAAAAGCTTCTCTTTG-AA-ACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
*
687286 TGGTTCCAAATCTTGAAAAG-AT
453 TGGTTCCCAATCTTGAAAAGAAT
* * * * *
687308 AGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAACTTTGATTTTAACGAAAAT
1 A-GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAAT
* * * * * *
687373 AAGGTAATGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACATTTATCCTAATAAGGATAAT
65 AAGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
* * * * **
687438 ATGTTTATAATGCCTAACCACAAAATGAAT-AATGATCCTTACAAGAATCCATGTTTGACGCGCT
130 ATGTTTATAATGCCTAATCACAAAATGAATGAA-GATCCTTACTAGAATCCATGTTTGTCTCTTT
* **
687502 TAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
194 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
** * ** * *
687567 TCAATAAT-GTGTATCCTTATGGGAAGACTTTGTTTATGCTAACTAATCCTGAAACGAATGAGGA
259 TCAAT-ATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGA
* * * *
687631 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATCAGTAACGGTGGA
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
* * *
687696 AAAAAAAGCTTCTCTTTCGAAACCAAAGCATCAATGTCATGTACCCTAATGAAGGGAATGTTTTT
388 AAAAAAAGCTTCTCTTT-GAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* *
687761 TTCGTTCCCAATCTTGAAAGGAAT
452 TTGGTTCCCAATCTTGAAAAGAAT
* * *
687785 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAAGTTTGATTTTAAGGAAAATA
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * * * *
687850 AGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTA
66 AGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAATA
*** * *
687914 TGTTTATAGCACCGAATCACAAAATGAATGAAGATCCTTACTAGAATCCGTGTTTGTCTCTTTTG
131 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTG
* *
687979 AGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATC
196 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATC
* * * *
688044 AATATCGTGTATCCTTATTAGAAAACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTT
261 AATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGATTA
688109 GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAACGGTGGAAA
326 GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATC-AATAACGGTGGAAA
* * * *
688173 GAAAAGCTTATC-TTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAATGTGTTTT
390 AAAAAGCTTCTCTTTG-AA-ACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
*
688237 TGGTTCCTAATCTTGAAAAG-AT
453 TGGTTCCCAATCTTGAAAAGAAT
* * * * * *
688259 AGGAGACAGTTACGAGAATCAATGCTTGTTTTGTGTAAGGGTCAAACTTTGATTTTAAGGAAAAT
1 A-GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAAT
* * * * * *
688324 AAGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATT
65 AAGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
* *
688388 ATGTTTAT-A-GCAGCAAATCACAAAATGAATGAAGATCCTTACTTGAATCCATGTTTGTCTCTT
130 ATGTTTATAATGC--CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTT
* *
688451 TTGAGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGC
193 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGC
*
688516 ATCAATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
258 ATCAATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGA
*
688581 TTTGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAACGGT-G
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATC-AATAACGGTGG
* *
688644 AAAAGAAAAGCTTCTC-TTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAATGTG
387 AAAA-AAAAGCTTCTCTTTG-AA-ACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
*
688708 TTTTTGGTTCCTAATCTTGAAAAG-AT
449 TTTTTGGTTCCCAATCTTGAAAAGAAT
* * * * *
688734 AGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAACTTCGATTTTAAGGAAAAT
1 A-GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAAT
* * * *
688799 AAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACATTTATCCTAATGAGGATAAT
65 AAGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
* * * * **
688864 ATGTTTATAATGCCTAACCACAAAATGAA-CAATGATCCTTACAAGAATCCATGTTTGACTCGCT
130 ATGTTTATAATGCCTAATCACAAAATGAATGAA-GATCCTTACTAGAATCCATGTTTGTCTCTTT
* * *
688928 TGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTACGAAACCAAAGCA
194 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
** *
688993 TCAATAAT-GTGTATCCTTATGGGAAGAC-----TT-T--T-CCT-A-----AAACGAATGGGGA
259 TCAAT-ATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGA
* * *
689042 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATCAATAACGGTGGA
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
* * * * *
689107 AAAAAAATCTTCTCTTTCGACACCAAAT-CATCAATGTCATGTACCCTAAAGAAGGGAATGTATT
388 AAAAAAAGCTTCTCTTT-GAAACC-AATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* *
689171 TTTGGTTCCAAATCTTGAAAGGAAT
451 TTTGGTTCCCAATCTTGAAAAGAAT
* *
689196 GGAGACTGTTACGAGAATCAATGTTTGTCTTATTTAAAGGACAAAC-TTGATTTTAAGGAAAATA
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * * *
689260 AGGTAAAGAAAA-TTTTTGCATG-CAATAGACAACCATAAATATCATTTATCCTAATGAGGAGAA
66 AGGCAAAGAAAAGATTTT-CATGCCAA-AGAAAACCATCAATAACATTTATCCTAATGAGGAGAA
* * * *
689323 TTTGTTTATAATGCCGAGTCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATT
129 TATGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTT
* * *** * * *
689388 TGAGGCACGAACTTAGACTTTTCAAAAATTGACAGGAAAAACAACATTTCTTGTGAAACCAAAGC
194 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA-AGCATTTCTTGCGAAACCAAAGC
* * * * *
689453 ATCAATATCGTGTATCCATATTAGACGACTATGTCTATGCGGCCTAATCCTGAAAAGAGTGGGGA
258 ATCAATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGA
* * * * *
689518 TTAGTATATGTTTTCATGTTTGTCTTTTTTAAGGGACAAACTTTGACTCTACCAATAACGGTGGA
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
* * * *
689583 AATAAAAGCTTCTCTTGTGACATCAATGCATCAATGTCATGTACCCTAATGAAGGGAATGTGTTT
388 AAAAAAAGCTTCTCTT-TGAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* *
689648 TTGGTTCCTAATCTTGAAAAGATT
452 TTGGTTCCCAATCTTGAAAAGAAT
* *
689672 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGTCAAACTTTGATTTTAAGGAAAAT-
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * *
689736 AGGTTAAAGAAAAGATTTTCATACCAAAGAAAACCATCCATAACATTTATCCTAATAAGGAGAAT
66 AGG-CAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
* * * * * *
689801 TTATTCATAATG-CTAAATCACAAAATGAATGAAGATCCTCACAAGAATCCATGTTTGTCTCATT
130 ATGTTTATAATGCCT-AATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTT
* * * * *
689865 TGAGACATGAACTTTGACTTTTCAAAAATTGGTGGGAAAAAAGCATTTTTTGCGAAACCAAAGCA
194 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
* * * * *
689930 TCAATGTCGTCTATCCTTATTAGAAGACTACGTTTGTAG-TGCCTAATCCTGAAAAGAATAGGGA
259 TCAATATCGTGTATCCTTATTAGAAGACTATGTTTAT-GCTGCCTAATCCTGAAAAGAATGGGGA
* * * *
689994 TTAGTATAAGTATTCATGATTGTCTTGTTTAAGAGACAAACTTTGATTCTATCAATAATGATGGA
323 TTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
* * * * *
690059 AAGAAAAGCTTCTCTTACGACACCAATGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTT
388 AAAAAAAGCTTCTCTT-TGAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
*
690124 TTGGTTCCCAATCTTGAAAGGAAT
452 TTGGTTCCCAATCTTGAAAAGAAT
* * * * * * *
690148 GGAGACTGTTACGAGAATCAATGCTTGCCTTGTTTAAAGGACAAACTTGGATTTTATGAAAAATG
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * *
690213 AGGCAAAG-AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATA
66 AGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAATA
* * * * *
690277 TGTTGATAGTGCCTAATTACAAAATGAATGAAGATACTTAGTAGAATCCATGTTTGTCTCTTTTG
131 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTG
* * ** *
690342 AGGCAGGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGTGTTTCTTGCAAAACCAAAGCATC
196 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATC
* * * * *
690407 AATATCGTGTATCCTTAGTAGAAGACTATGTTTTTTG-TGCCTAATCCTTAAAAAAATAGGGATT
261 AATATCGTGTATCCTTATTAGAAGACTATG-TTTATGCTGCCTAATCCTGAAAAGAATGGGGATT
* * * * * * * * **
690471 TGTATGACTTTTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATTAGTAGTGGTGGAAA
325 AGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAA
* * * * * * * *
690536 GAAAAGCTTTTCTTACGATACCAAAGCATCATTGTCTTGTATCCTAATCAAGGGAATGTGTTTTT
390 AAAAAGCTTCTCTT-TGAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* * ** *
690601 AGTTTCCAATCTCAAAAAAAAT
454 GGTTCCCAATCTTGAAAAGAAT
* * * * * * *
690623 GGACACTATTACCAGAATCAATGCATGTGTTA-CTAAAGGGACAAACTTTGATTTTAAGGAAAAT
1 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA-GGACAAACTTTGATTTTAAGGAAAAT
* * * * * *
690687 AGGGCAAAGAAAATATTTTCATGCCGAAGAAAAACATCAATATCATTTATCCTAGTGAGGAGAAT
65 AAGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAAT
*
690752 GTGTTTATAATGCCTAATCACAAAATGAATGAAGATCC
130 ATGTTTATAATGCCTAATCACAAAATGAATGAAGATCC
690790 ACGTTGGTCT
Statistics
Matches: 4673, Mismatches: 617, Indels: 184
0.85 0.11 0.03
Matches are distributed among these distances:
459 7 0.00
460 154 0.03
461 216 0.05
462 14 0.00
463 1 0.00
466 2 0.00
467 4 0.00
468 1 0.00
470 4 0.00
471 3 0.00
472 1 0.00
473 12 0.00
474 395 0.08
475 1778 0.38
476 1872 0.40
477 197 0.04
478 12 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (475 bp):
AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
AGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATAACATTTATCCTAATGAGGAGAATA
TGTTTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTG
AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATC
AATATCGTGTATCCTTATTAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGGATTA
GTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAA
AAAAGCTTCTCTTTGAAACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAGAAT
Found at i:686773 original size:951 final size:951
Alignment explanation
Indices: 684933--690789 Score: 8103
Period size: 951 Copynumber: 6.2 Consensus size: 951
684923 TAAGCTTTCA
*
684933 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTACGGAAAATA
1 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
*
684998 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATAAT
66 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
* * *
685063 GTTTATACCACCAAATCACAAAATAAATGAAGATCCTTACTAGAATCCGTGTTTGTCTCTTTTGA
131 GTTTATAACACCAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGA
*
685128 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCCTGCGAAACCAAAGCATCA
196 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
685193 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
261 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
*
685258 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAGGA
326 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAAGA
* * *
685323 AAAGCTTCTCTTGTAACACCAATGCATCAATGTCAAGTTTCCTAATAAAGGGAATGCGTTTTTGG
391 AAAGCTTCTCTTGTAACACCAATGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG
685388 TTCCTAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
456 TTCCTAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
*
685453 CTTTGATTTTAAGGAAAATAAGGTAATGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
521 CTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
*
685518 TTATCCTAATGAGGATAATATGTTTATAATGCCTAACCACAAAATGAAT-AATGATCCTTACAAG
586 TTATCCTAATGAGGAGAATATGTTTATAATGCCTAACCACAAAATGAATGAA-GATCCTTACAAG
* * *
685582 AATCCATGTTTGACGCGCTCGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCAT
650 AATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCAT
* *
685647 TTCTTGCGAAACCAAAGCATCAATAAT-GTGTATCCTTATGGGAAGACTTTGTTTATGCTAACTA
715 TTCTTGCGAAACCAAAGCATCAAT-ATCGTGTATCCTTATGAGAAGACTATGTTTATGCTAACTA
* *
685711 ATCCTGAAACGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGA
779 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
685776 TTCTATCAGTAACGGTGGAAAAAAAAGCTTCTCTTTCGAAACCAAAGCATCAATGTCATGTACCC
844 TTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTTCGACACCAAAGCATCAATGTCATGTACCC
*
685841 TAATGAAGGGAATGT-TTTGTTCGTTCCCAATCTTGAAAGGAAT
909 TAATGAAGGGAATGTGTTT-TTCGTTCCCAATCTTGAAAAGAAT
*
685884 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAAGTTTGATTTTAAGGAAAATA
1 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
685949 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
66 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
* * *
686014 GTTTATAGCACCAAATCACAAAATGAATGAAGATCCTTGCTTGAATCCATGTTTGTCTCTTTTGA
131 GTTTATAACACCAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGA
686079 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
196 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
686144 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
261 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
* *
686209 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAATGGTGAAAAGA
326 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAAGA
*
686274 AAAGCTTCTCTTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAATGTGTTTTTGG
391 AAAGCTTCTCTTGTAACACCAATGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG
*
686339 TTCCTGATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
456 TTCCTAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
*
686404 CTTCGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
521 CTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
*
686469 TTATCCTAATGAGGATAATATGTTTATAATGCCTAACCACAAAATGAAT-AATGATCCTTACAAG
586 TTATCCTAATGAGGAGAATATGTTTATAATGCCTAACCACAAAATGAATGAA-GATCCTTACAAG
*
686533 AATCCATGTTTGACTCGCTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCAT
650 AATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCAT
* *
686598 TTCTTGCGAAACCAAAGCATCAATAAT-GTGTATCCTTATGGGAAGACTTTGTTTATGCTAACTA
715 TTCTTGCGAAACCAAAGCATCAAT-ATCGTGTATCCTTATGAGAAGACTATGTTTATGCTAACTA
* * *
686662 ATGCTGAAACGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGA
779 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
686727 TTCTATCAATAACGGTGGAAAAAAAAGCTTTTCTTTCGACACCAAAGCATCAATGTCATGTACCC
844 TTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTTCGACACCAAAGCATCAATGTCATGTACCC
* * *
686792 TAATGAAGGGAATGTTTTTTTCATTCCCAATCTTGAAAGGAAT
909 TAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAAT
686835 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
1 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
686900 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTAT-CTAATGAGGAGATTAT
66 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
* * *
686964 GTTTATAGCACCAAATCACAAAATAAATGAAGATCCTTACTAGAATCCGTGTTTGTCTCTTTTGA
131 GTTTATAACACCAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGA
*
687029 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCCTGCGAAACCAAAGCATCA
196 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
687094 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
261 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
*
687159 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAGGA
326 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAAGA
* * * *
687224 AAAGCTTCTCTTGTAACACCAATGCATCAATGTCAAGTTTCCTAATAAAGAGAATGCGTTTTTGG
391 AAAGCTTCTCTTGTAACACCAATGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG
*
687289 TTCCAAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
456 TTCCTAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
* *
687354 CTTTGATTTTAACGAAAATAAGGTAATGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
521 CTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
* *
687419 TTATCCTAATAAGGATAATATGTTTATAATGCCTAACCACAAAATGAAT-AATGATCCTTACAAG
586 TTATCCTAATGAGGAGAATATGTTTATAATGCCTAACCACAAAATGAATGAA-GATCCTTACAAG
* * *
687483 AATCCATGTTTGACGCGCTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCAT
650 AATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCAT
* *
687548 TTCTTGCGAAACCAAAGCATCAATAAT-GTGTATCCTTATGGGAAGACTTTGTTTATGCTAACTA
715 TTCTTGCGAAACCAAAGCATCAAT-ATCGTGTATCCTTATGAGAAGACTATGTTTATGCTAACTA
* * *
687612 ATCCTGAAACGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGA
779 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
687677 TTCTATCAGTAACGGTGGAAAAAAAAGCTTCTCTTTCGAAACCAAAGCATCAATGTCATGTACCC
844 TTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTTCGACACCAAAGCATCAATGTCATGTACCC
* *
687742 TAATGAAGGGAATGTTTTTTTCGTTCCCAATCTTGAAAGGAAT
909 TAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAAT
*
687785 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAAGTTTGATTTTAAGGAAAATA
1 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
687850 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
66 AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
* * *
687915 GTTTATAGCACCGAATCACAAAATGAATGAAGATCCTTACTAGAATCCGTGTTTGTCTCTTTTGA
131 GTTTATAACACCAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGA
687980 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
196 GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
* *
688045 ATATCGTGTATCCTTATTAGAAAACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
261 ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
688110 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAAGA
326 TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAAGA
* *
688175 AAAGCTTATCTTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAATGTGTTTTTGG
391 AAAGCTTCTCTTGTAACACCAATGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG
* *
688240 TTCCTAATCTTGAAAAGATAGGAGACAGTTACGAGAATCAATGCTTGTTTTGTGTAAGGGTCAAA
456 TTCCTAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
* * * * * * * *
688305 CTTTGATTTTAAGGAAAATAAGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCAT
521 CTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
* * * **
688369 TTATCCTAATGAGGAGATTATGTTTAT-A-GCAGCAAATCACAAAATGAATGAAGATCCTTACTT
586 TTATCCTAATGAGGAGAATATGTTTATAATGC--CTAACCACAAAATGAATGAAGATCCTTACAA
* ** * * *
688432 GAATCCATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCG
649 GAATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCA
* * **
688497 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTA
714 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGCTAACTA
* * *
688562 ATCCTGAAAAGAATGGGGATTTGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGA
779 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
688627 TTCTA-CGAATAACGGT-GAAAAGAAAAGCTTCTCTTGT-AACACCAATGCATCAATGCCATGTA
844 TTCTATC-AATAACGGTGGAAAA-AAAAGCTTCTCTT-TCGACACCAAAGCATCAATGTCATGTA
* * * *
688689 TCCTAATAAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG-AT
906 CCCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAAT
* ** * * * *
688734 AGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAACTTCGATTTTAAGGAAAAT
1 A-GAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAAT
* * * * * * * * * *
688799 AAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACATTTATCCTAATGAGGATAAT
65 AAGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATT
** * * * * * **
688864 ATGTTTATAATGCCTAACCACAAAATGAA-CAATGATCCTTACAAGAATCCATGTTTGACTCGCT
129 ATGTTTATAACACCAAATCACAAAATGAATGAA-GATCCTTACTAGAATCCATGTTTGTCTCTTT
* * * * *
688928 TGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTACGAAACCAAAGCA
193 TGAGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCA
** *
688993 TCAATAAT-GTGTATCCTTATGGGAAGAC-----TT-T--T-CCT-A-----AAACGAATGGGGA
258 TCAAT-ATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * *
689042 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATC-AATAACGGTGG
322 TTTGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAACGGTGG
* * * *
689106 AAAAAAAATCTTCTCTT-TCGACACCAAAT-CATCAATGTCATGTACCCTAA-AGAAGGGAATGT
386 AAAGAAAAGCTTCTCTTGT-AACACC-AATGCATCAATGTCATGTATCCTAATA-AAGGGAATGT
* * * * * *
689168 ATTTTTGGTTCCAAATCTTGAAAGGA-ATGGAGACTGTTACGAGAATCAATGTTTGTCTTATTTA
448 GTTTTTGGTTCCTAATCTTGAAAAGATA-GGAGACTGTTACGAGAATCAATGCTTGTTTTATGTA
* * *
689232 AAGGACAAAC-TTGATTTTAAGGAAAATAAGGTAAAGAAAA-TTTTTGCATG-CAATAGACAA-C
512 AGGGTCAAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTT-CATGCCAA-AGA-AAGC
* * * * * **
689293 CATAAATATCATTTATCCTAATGAGGAGAATTTGTTTATAATGCCGAGTCACAAAATGAATGAAG
574 TATCAATAACATTTATCCTAATGAGGAGAATATGTTTATAATGCCTAACCACAAAATGAATGAAG
* * ** * ***
689358 ATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGACAG
639 ATCCTTACAAGAATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * *
689423 GAAAAACAACATTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCATATTAGACGACTATGTC
704 GAAGAA-AGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
*** * * * *
689488 TATGCGGCCTAATCCTGAAAAGAGTGGGGATTAGTAT-ATGTTTTCATGTTTGTCTTTTTTAAGG
768 TATGCTAACTAATCCTGAAAAGAATGGGGATTAGTATGA-GTATTCATGTTTGTCTTATTTAAGA
* * * * *
689552 GACAAACTTTGACTCTACCAATAACGGTGGAAATAAAAGCTTCTCTTGT-GACATCAATGCATCA
832 GACAAACTTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTT-TCGACACCAAAGCATCA
* * *
689616 ATGTCATGTACCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGATT
896 ATGTCATGTACCCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAAT
* * * *
689672 AGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGTCAAACTTTGATTTTAAGGAAAAT-
1 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
* * * * * * * *
689736 AGGTTAAAGAAAAGATTTTCATACCAAAGAAAACCATCCATAACATTTATCCTAATAAGGAGAAT
66 AGG-CAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAG-AT
* * ** * * * *
689801 T-TATTCATAATGCTAAATCACAAAATGAATGAAGATCCTCACAAGAATCCATGTTTGTCTCATT
128 TATGTTTATAACACCAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTT
* * * * * * *
689865 TGAGACATGAACTTTGACTTTTCAAAAATTGGTGGGAAAAAAGCATTTTTTGCGAAACCAAAGCA
193 TGAGGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCA
* * * * * *
689930 TCAATGTCGTCTATCCTTATTAGAAGACTACGTTTGTAGTGCCTAATCCTGAAAAGAATAGGGAT
258 TCAATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
689995 TAGTATAAGTATTCATGATTGTCTTGTTTAAGAGACAAACTTTGATTCTATC-AATAATGATGGA
323 TTGTATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTA-CGAATAACGGTGGA
*** *
690059 AAGAAAAGCTTCTCTTACGACACCAATGCGTCAATGTCATGTATCCTAATGAAA-GGAATGTGTT
387 AAGAAAAGCTTCTCTTGTAACACCAATGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTT
* * ** * * *
690123 TTTGGTTCCCAATCTTGAAAGGA-ATGGAGACTGTTACGAGAATCAATGCTTGCCTTGTTTAAAG
451 TTTGGTTCCTAATCTTGAAAAGATA-GGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGG
* * * * * * * * *
690187 GACAAACTTGGATTTTATGAAAAATGAGGCAAAG-AAAGATTTCCATGCAAAAGAAA-ATCATCA
515 GTCAAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCT-ATCA
* * * ** *
690250 ATATCATTTATCCTAATGAGGAGAATATGTTGATAGTGCCTAATTACAAAATGAATGAAGATACT
579 ATAACATTTATCCTAATGAGGAGAATATGTTTATAATGCCTAACCACAAAATGAATGAAGATCCT
** * ** * *
690315 TAGTAGAATCCATGTTTGTCTCTTTTGAGGCAGGAACTTAGACTTTTCAAAAATTGGTGGGAAGA
644 TACAAGAATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
** * *
690380 AAGTGTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTA-GTAGAAGACTATGTTTTTTG
709 AAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTATG-TTTATG
** * * * * * * *
690444 -TGCCTAATCCTTAAAAAAATAGGGATTTGTATGACTTTTCATGTTTGTCTTATTTAAGAGAGAA
772 CTAACTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * ** * * * * * *
690508 ACTTTGATTCTATTAGTAGTGGTGGAAAGAAAAGCTTTTCTTACGATACCAAAGCATCATTGTCT
837 ACTTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTTCGACACCAAAGCATCAATGTCA
* * * * ** *
690573 TGTATCCTAATCAAGGGAATGTGTTTTTAGTTTCCAATCTCAAAAAAAAT
902 TGTACCCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAAT
* * * * ** *
690623 GGACACTATTACCAGAATCAATGCATGTGTTA-CTAAAGGGACAAACTTTGATTTTAAGGAAAAT
1 AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAA-GGACAAACTTTGATTTTAAGGAAAAT
* * * * ** * * * * *
690687 AGGGCAAAGAAAATATTTTCATGCCGAAGAAAAACATCAATATCATTTATCCTAGTGAGGAGAAT
65 AAGGCAAAG-AAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATT
* ** *
690752 GTGTTTATAATGCCTAATCACAAAATGAATGAAGATCC
129 ATGTTTATAACACCAAATCACAAAATGAATGAAGATCC
690790 ACGTTGGTCT
Statistics
Matches: 4479, Mismatches: 364, Indels: 126
0.90 0.07 0.03
Matches are distributed among these distances:
935 32 0.01
936 311 0.07
937 459 0.10
938 13 0.00
941 1 0.00
942 5 0.00
943 2 0.00
945 2 0.00
946 5 0.00
947 1 0.00
948 2 0.00
949 12 0.00
950 1322 0.30
951 1956 0.44
952 327 0.07
953 28 0.01
954 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (951 bp):
AGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATA
AGGCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAATGAGGAGATTAT
GTTTATAACACCAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGA
GGCATGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
ATATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTG
TATAAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACGAATAACGGTGGAAAGA
AAAGCTTCTCTTGTAACACCAATGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG
TTCCTAATCTTGAAAAGATAGGAGACTGTTACGAGAATCAATGCTTGTTTTATGTAAGGGTCAAA
CTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAGCTATCAATAACAT
TTATCCTAATGAGGAGAATATGTTTATAATGCCTAACCACAAAATGAATGAAGATCCTTACAAGA
ATCCATGTTTGACTCGCTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATT
TCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGCTAACTAAT
CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
CTATCAATAACGGTGGAAAAAAAAGCTTCTCTTTCGACACCAAAGCATCAATGTCATGTACCCTA
ATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAAT
Found at i:688311 original size:159 final size:158
Alignment explanation
Indices: 685155--688787 Score: 556
Period size: 159 Copynumber: 22.9 Consensus size: 158
685145 TACAAATATT
* * * * * *
685155 GGTGGGAAGAAAGCGTTTCCTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTATTAGAA--GA
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCC-TAATA-AAGGGA
* * * * * * *
685217 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATA--AGTATTC-ATGTTTGTCT
62 ATATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGT-TACGAG-AATCAATGCTTGTCT
* * *
685279 TTTTTAAGAGACAAACTTTGATTCTACGAATAAC
125 TTTGTAAGGGTCAAACTTTGATTCTACGAATAAC
* * ** * *
685313 GGTGGAAGGAAAAGCTTCTCTTGTAACACCAATGCATCAATGTCAAGTTTCCTAATAAAGGGAAT
1 GGTGGAAAG-AAAGCTT-TCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAAT
** *
685378 GCGTTTTTGGTTCCTAATCTTGAAAAG-ATAGGAGA-CTGTTACGAGAATCAATGCTTGT-TTTA
64 ATGTTTATGGTTCCTAATCTTGAAAAGAAT-GGAGATCTGTTACGAGAATCAATGCTTGTCTTT-
* *
685440 TGTAAGGGTCAAACTTTGATTTTAAGGAAAATAA-
127 TGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * * * * *
685474 GGT--AATGAAAAGATTTTCATGCCAA-A-GAAAGCTATCAATAACATTTATCCTAAT-GAGGAT
1 GGTGGAAAG-AAAG-CTTTCTTG-TAACACCAAAGC-ATCAATACCATGTATCCTAATAAAGG-G
** * *** * * * * * *
685534 AATATGTTTATAATGCCTAA-CCACAAAATGAAT-AATGATC-CTTACAAGAATCCATGTTTGAC
61 AATATGTTTATGGTTCCTAATCTTGAAAA-GAATGGA-GATCTGTTACGAGAATCAATGCTTGTC
** * ** * * *
685596 --GCGCTCGAGGCACAAACTTAGACTT-TAC-AAAAATT
124 TTTTG-T-AAGGGTCAAACTTTGA-TTCTACGAATAA-C
* * *** *
685631 GGTGGGAAGAAAGCATTTCTTGCGAA-ACCAAAGCATCAATAATGTGTATCCT--T-ATGGGAAG
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCCTAATAAAGGG-A-
* * ** * * * * * *
685692 ACTTTGTTTATGCTAACTAATCCTGAAACGAATGGGGAT-TAG-TATGAGTATTC-ATGTTTGTC
62 A-TATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCT-GTTACGAG-AATCAATGCTTGTC
* * * *
685754 TTATT-TAAGAGACAAGCTTTGATTCTATC-AGTAAC
124 TT-TTGTAAGGGTCAAACTTTGATTCTA-CGAATAAC
* ** * *
685789 GGTGGAAAAAAAAGCTTCTCTT-TCGAA-ACCAAAGCATCAATGTCATGTACCCTAATGAAGGGA
1 GGTGG-AAAGAAAGCTT-TCTTGT--AACACCAAAGCATCAATACCATGTATCCTAATAAAGGGA
* * * * * * * *
685852 ATGT-TTTGTTCGTTCCCAATCTTGAAAGGAATAGAGA-CTATTACGAGAATCAATGCTTGCCTT
62 ATATGTTT-ATGGTTCCTAATCTTGAAAAGAATGGAGATCTGTTACGAGAATCAATGCTTGTCTT
* * * * *
685915 ATT-TAAAGGACAAAGTTTGATTTTAAGGAAAATAA-
126 -TTGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * ** * * * * *
685950 -G-GCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAAT-GAGGAGATT
1 GGTGGAAAGAAAG-CTTTCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGG-GAAT
* ** * ** * * * ** * *
686012 ATGTTTATAGCACCAAATC-ACAAAATGAATGAAGATC-CTTGCTTGAATCCATGTTTGTCTCTT
64 ATGTTTATGGTTCCTAATCTTGAAAA-GAATGGAGATCTGTTACGAGAATCAATGCTTGTCT-TT
* * * **
686075 T-TGA-GG-CATGAACTTAGACTT-TACAAATATT
127 TGTAAGGGTCA--AACTTTGA-TTCTACGAATAAC
* * * * *
686106 GGTGGGAAGAAAGCGTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTATTAGAA--GA
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCC-TAATA-AAGGGA
* * * * * * *
686168 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATA--AGTATTC-ATGTTTGTCT
62 ATATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGT-TACGAG-AATCAATGCTTGTCT
* * * *
686230 TTTTTAAGAGACAAACTTTGATTCTACGAATAAT
125 TTTGTAAGGGTCAAACTTTGATTCTACGAATAAC
* * *
686264 GGTGAAAAGAAAAGCTTCTCTTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAAT
1 GGTGGAAAG-AAAGCTT-TCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAAT
* * *
686329 GTGTTTTTGGTTCCTGATCTTGAAAAG-ATAGGAGA-CTGTTACGAGAATCAATGCTTGT-TTTA
64 ATGTTTATGGTTCCTAATCTTGAAAAGAAT-GGAGATCTGTTACGAGAATCAATGCTTGTCTTT-
* * *
686391 TGTAAGGGTCAAACTTCGATTTTAAGGAAAATAA-
127 TGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * * * *
686425 GGT--AAAGAAAAGATTTTCATGCCAA-A-GAAAGCTATCAATAACATTTATCCTAAT-GAGGAT
1 GGTGGAAAG-AAAG-CTTTCTTG-TAACACCAAAGC-ATCAATACCATGTATCCTAATAAAGG-G
** * *** * * * * *
686485 AATATGTTTATAATGCCTAA-CCACAAAATGAAT-AATGATC-CTTACAAGAATCCATGTTTGAC
61 AATATGTTTATGGTTCCTAATCTTGAAAA-GAATGGA-GATCTGTTACGAGAATCAATGCTTG--
** ** ** * * *
686547 TCGCTTG--AGGCACGGACTTAGACTT-TAC-AAAAATT
122 TCTTTTGTAAGGGTCAAACTTTGA-TTCTACGAATAA-C
* * *** *
686582 GGTGGGAAGAAAGCATTTCTTGCGAA-ACCAAAGCATCAATAATGTGTATCCT--T-ATGGGAAG
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCCTAATAAAGGG-A-
* * ** * * * * *
686643 ACTTTGTTTATGCTAACTAATGC-TGAAACGAATGGGGAT-TAG-TATGAGTATTC-ATGTTTGT
62 A-TATGTTTATGGTTCCTAAT-CTTGAAAAGAATGGAGATCT-GTTACGAG-AATCAATGCTTGT
* * *
686704 CTTATT-TAAGAGACAAGCTTTGATTCTATC-AATAAC
123 CTT-TTGTAAGGGTCAAACTTTGATTCTA-CGAATAAC
* * ** * *
686740 GGTGGAAAAAAAAGCTTTTCTT-TCGACACCAAAGCATCAATGTCATGTACCCTAATGAAGGGAA
1 GGTGG-AAAGAAAGC-TTTCTTGT-AACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAA
* * * ** * * * * *
686804 TGTTTTTTTCATTCCCAATCTTGAAAGGAATAGAGA-CTATTACGAGAATCAATGCTTGCCTTAT
63 TATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGTTACGAGAATCAATGCTTGTCTT-T
* * * *
686868 T-TAAAGGACAAACTTTGATTTTAAGGAAAATAA-
127 TGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * ** * * * * *
686901 -G-GCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTAT-CTAAT-GAGGAGATT
1 GGTGGAAAGAAAG-CTTTCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGG-GAAT
* ** * ** * * * * ** *
686962 ATGTTTATAGCACCAAATC-ACAAAATAAATGAAGATC-CTTACTAGAATCCGTGTTTGTCTCTT
64 ATGTTTATGGTTCCTAATCTTGAAAA-GAATGGAGATCTGTTACGAGAATCAATGCTTGTCT-TT
* * * **
687025 T-TGA-GG-CATGAACTTAGACTT-TACAAATATT
127 TGTAAGGGTCA--AACTTTGA-TTCTACGAATAAC
* * * * * *
687056 GGTGGGAAGAAAGCGTTTCCTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTATTAGAA--GA
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCC-TAATA-AAGGGA
* * * * * * *
687118 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATA--AGTATTC-ATGTTTGTCT
62 ATATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGT-TACGAG-AATCAATGCTTGTCT
* * *
687180 TTTTTAAGAGACAAACTTTGATTCTACGAATAAC
125 TTTGTAAGGGTCAAACTTTGATTCTACGAATAAC
* * ** * * *
687214 GGTGGAAGGAAAAGCTTCTCTTGTAACACCAATGCATCAATGTCAAGTTTCCTAATAAAGAGAAT
1 GGTGGAAAG-AAAGCTT-TCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAAT
** * *
687279 GCGTTTTTGGTTCCAAATCTTGAAAAG-ATAGGAGA-CTGTTACGAGAATCAATGCTTGT-TTTA
64 ATGTTTATGGTTCCTAATCTTGAAAAGAAT-GGAGATCTGTTACGAGAATCAATGCTTGTCTTT-
*
687341 TGTAAGGGTCAAACTTTGATTTTAACGAAAATAA-
127 TGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * * * *
687375 GGT--AATGAAAAGATTTTCATGCCAA-A-GAAAGCTATCAATAACATTTATCCTAAT-AAGGAT
1 GGTGGAAAG-AAAG-CTTTCTTG-TAACACCAAAGC-ATCAATACCATGTATCCTAATAAAGG-G
** * *** * * * * * *
687435 AATATGTTTATAATGCCTAA-CCACAAAATGAAT-AATGATC-CTTACAAGAATCCATGTTTGAC
61 AATATGTTTATGGTTCCTAATCTTGAAAA-GAATGGA-GATCTGTTACGAGAATCAATGCTTGTC
*** ** * * *
687497 GCGCT-TAAGGCACAAACTTAGACTT-TAC-AAAAATT
124 -TTTTGTAAGGGTCAAACTTTGA-TTCTACGAATAA-C
* * *** *
687532 GGTGGGAAGAAAGCATTTCTTGCGAA-ACCAAAGCATCAATAATGTGTATCCT--T-ATGGGAAG
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCCTAATAAAGGG-A-
* * ** * * * * *
687593 ACTTTGTTTATGCTAACTAATCCTGAAACGAAT-GAGGAT-TAG-TATGAGTATTC-ATGTTTGT
62 A-TATGTTTATGGTTCCTAATCTTGAAAAGAATGGA-GATCT-GTTACGAG-AATCAATGCTTGT
* * * *
687654 CTTATT-TAAGAGACAAGCTTTGATTCTATC-AGTAAC
123 CTT-TTGTAAGGGTCAAACTTTGATTCTA-CGAATAAC
* ** * *
687690 GGTGGAAAAAAAAGCTTCTCTT-TCGAA-ACCAAAGCATCAATGTCATGTACCCTAATGAAGGGA
1 GGTGG-AAAGAAAGCTT-TCTTGT--AACACCAAAGCATCAATACCATGTATCCTAATAAAGGGA
* * * * * * * * *
687753 ATGTTTTTTTCGTTCCCAATCTTGAAAGGAATAGAGA-CTATTACGAGAATCAATGCTTGCCTTA
62 ATATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGTTACGAGAATCAATGCTTGTCTT-
* * * * *
687817 TT-TAAAGGACAAAGTTTGATTTTAAGGAAAATAA-
126 TTGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * ** * * * * *
687851 -G-GCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAAT-GAGGAGATT
1 GGTGGAAAGAAAG-CTTTCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGG-GAAT
* ** * ** * * * ** *
687913 ATGTTTATAGCACCGAATC-ACAAAATGAATGAAGATC-CTTACTAGAATCCGTGTTTGTCTCTT
64 ATGTTTATGGTTCCTAATCTTGAAAA-GAATGGAGATCTGTTACGAGAATCAATGCTTGTCT-TT
* * * **
687976 T-TGA-GG-CATGAACTTAGACTT-TACAAATATT
127 TGTAAGGGTCA--AACTTTGA-TTCTACGAATAAC
* * * * * * **
688007 GGTGGGAAGAAAGCGTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTAT-TAGAAAAC
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAA-
* * * * * * *
688070 TGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATA--AGTATTC-ATGTTTGTCTT
63 TATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGT-TACGAG-AATCAATGCTTGTCTT
* * *
688132 TTTTAAGAGACAAACTTTGATTCTACGAATAAC
126 TTGTAAGGGTCAAACTTTGATTCTACGAATAAC
* *
688165 GGTGGAAAGAAAAGCTTATCTTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAAT
1 GGTGGAAAG-AAAGCTT-TCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAAT
* * *
688230 GTGTTTTTGGTTCCTAATCTTGAAAAG-ATAGGAGA-CAGTTACGAGAATCAATGCTTGT-TTTG
64 ATGTTTATGGTTCCTAATCTTGAAAAGAAT-GGAGATCTGTTACGAGAATCAATGCTTGTCTTT-
* *
688292 TGTAAGGGTCAAACTTTGATTTTAAGGAAAATAA-
127 TGTAAGGGTCAAACTTTGATTCT-ACG--AATAAC
* * * * * ** * * * * *
688326 -G-GCAAAGAAAGACTTCCATGCAAAAGAAAACCATCGATACCATTTATCCTAAT-GAGGAGATT
1 GGTGGAAAGAAAG-CTTTCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGG-GAAT
* *** * ** * * ** * *
688388 ATGTTTATAGCAGCAAATC-ACAAAATGAATGAAGATC-CTTACTTGAATCCATGTTTGTCTCTT
64 ATGTTTATGGTTCCTAATCTTGAAAA-GAATGGAGATCTGTTACGAGAATCAATGCTTGTCT-TT
* * * **
688451 T-TGA-GG-CATGAACTTAGACTT-TACAAATATT
127 TGTAAGGGTCA--AACTTTGA-TTCTACGAATAAC
* * * * *
688482 GGTGGGAAGAAAGCGTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTATTAGAA--GA
1 GGTGGAAAGAAAGC-TTTCTTG-TAACACCAAAGCATCAATACCATGTATCC-TAATA-AAGGGA
* * * * * * *
688544 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATA--AGTATTC-ATGTTTGTCT
62 ATATGTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGT-TACGAG-AATCAATGCTTGTCT
* * *
688606 TTTTTAAGAGACAAACTTTGATTCTACGAATAAC
125 TTTGTAAGGGTCAAACTTTGATTCTACGAATAAC
* * *
688640 GGTGAAAAGAAAAGCTTCTCTTGTAACACCAATGCATCAATGCCATGTATCCTAATAAAGGGAAT
1 GGTGGAAAG-AAAGCTT-TCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAAT
* *
688705 GTGTTTTTGGTTCCTAATCTTGAAAAG-ATAGGAGA-CTGTTACGAGAATCAATGCTTGT-TTTA
64 ATGTTTATGGTTCCTAATCTTGAAAAGAAT-GGAGATCTGTTACGAGAATCAATGCTTGTCTTT-
*
688767 TGTAAGGGTCAAACTTCGATT
127 TGTAAGGGTCAAACTTTGATT
688788 TTAAGGAAAA
Statistics
Matches: 2460, Mismatches: 717, Indels: 595
0.65 0.19 0.16
Matches are distributed among these distances:
154 4 0.00
155 26 0.01
156 32 0.01
157 181 0.07
158 999 0.41
159 1080 0.44
160 71 0.03
161 21 0.01
162 46 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (158 bp):
GGTGGAAAGAAAGCTTTCTTGTAACACCAAAGCATCAATACCATGTATCCTAATAAAGGGAATAT
GTTTATGGTTCCTAATCTTGAAAAGAATGGAGATCTGTTACGAGAATCAATGCTTGTCTTTTGTA
AGGGTCAAACTTTGATTCTACGAATAAC
Found at i:691404 original size:620 final size:619
Alignment explanation
Indices: 690207--691440 Score: 1952
Period size: 620 Copynumber: 2.0 Consensus size: 619
690197 GATTTTATGA
* *
690207 AAAATGAGGCAAAGAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
1 AAAATAAGGCAAAGAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGA
* * * *
690272 GAATATGTTGATAGTGCCTAATTACAAAATGAATGAAGATACTTAGTAGAATCCATGTTTGTCTC
66 GAATATGTTGATAGTGCCTAATGACAAAATAAATGAAGATACTTAGTAAAATCCATGTTTGTATC
* *
690337 TTTTGAGGCAGGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGTGTTTCTTGCAAAACCAAA
131 TTTTGAGGCAGGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTCGCAAAACCAAA
* * * * *
690402 GCATCAATATCGTGTATCCTTAGTAGAAGACTATGTTTTTTGTGCCTAATCCTTAAAAAAATAGG
196 GCATCAATACCATGTATCCTTAGTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATAGG
* * * * * * * *
690467 GATTTGTATGACTTTTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATTAGTAGTGGTG
261 GATTAGTATGAATATTCATGTTTCTCTTATTTAAAAGACAAACTTTGATTCTATCAATAGTGGT-
* *
690532 GAAAGAAAAGCTTTTCTTACGATACCAAAGCATCATTGTCTTGTATCCTAATCAAGGGAATGTGT
325 --AAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGTATCCTAATCAAGGGAATGTGT
690597 TTTTAGTTTCCAATCTCAAAAAAAATGGACACTATTACCAGAATCAATGCATGTGTTACTAAAGG
388 TTTTAGTTTCCAATCTCAAAAAAAATGGACACTATTACCAGAATCAATGCATGTGTTACTAAAGG
*
690662 GACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTTCATGCCGAAGAAAAACATCAA
453 GACAAACTTTGATTTTAAGGAAAATAGCGCAAAGAAAATATTTTCATGCCGAAGAAAAACATCAA
*
690727 TATCATTTATCCTAGTGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCCAC
518 TATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCCAC
*
690792 GTTGGTCTCATTTGAGGCTCGAACATTGATTTCAAGG
583 GTTGGACTCATTTGAGGCTCGAACATTGATTTCAAGG
* * * *
690829 AAAATAAGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATGTCATTTATCCTAATGAGG
1 AAAATAAGGCAAAG-AAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* * *
690894 AGAATATGTTTATAGTGCCTAATGACAAAATAAATGAAGATCCTTAGTAAAATCTATGTTTGTAT
65 AGAATATGTTGATAGTGCCTAATGACAAAATAAATGAAGATACTTAGTAAAATCCATGTTTGTAT
* *
690959 CATTTTGAGGCATGAACTTAGGCTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTCGCAAAACCA
130 C-TTTTGAGGCAGGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTCGCAAAACCA
*
691024 AAGCATCAATACCATGTATCCTTA-TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
194 AAGCATCAATACCATGTATCCTTAGT-AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAT
691088 -GGAGATTAGTATGAATATTCATGTTTCTCTTATTTAAAAGACAAACTTTGATTCTATCAATAGT
258 AGG-GATTAGTATGAATATTCATGTTTCTCTTATTTAAAAGACAAACTTTGATTCTATCAATAGT
*
691152 GGT-AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATCAAGGGAATGTG
322 GGTAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGTATCCTAATCAAGGGAATGTG
** ** *
691216 TTTTTAGTTTCCAATCTTGAAAAAAATGGACACTATTATGAGAATCAATGCCTGTGTTACTAAAG
387 TTTTTAGTTTCCAATCTCAAAAAAAATGGACACTATTACCAGAATCAATGCATGTGTTACTAAAG
* *
691281 GGACAGACTTTGATTTTAAGGAAAATAGCGCAAAGAAAATATTTTCATGCCGAAGAAAGACATCA
452 GGACAAACTTTGATTTTAAGGAAAATAGCGCAAAGAAAATATTTTCATGCCGAAGAAAAACATCA
* *
691346 ATATCATTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCA
517 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCCA
* *
691411 TGTTGGACTCATTTGAGGCTCGAACCTTGA
582 CGTTGGACTCATTTGAGGCTCGAACATTGA
691441 CTTTACAAAA
Statistics
Matches: 560, Mismatches: 48, Indels: 10
0.91 0.08 0.02
Matches are distributed among these distances:
620 269 0.48
622 12 0.02
623 108 0.19
624 171 0.31
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (619 bp):
AAAATAAGGCAAAGAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGA
GAATATGTTGATAGTGCCTAATGACAAAATAAATGAAGATACTTAGTAAAATCCATGTTTGTATC
TTTTGAGGCAGGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTCGCAAAACCAAA
GCATCAATACCATGTATCCTTAGTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATAGG
GATTAGTATGAATATTCATGTTTCTCTTATTTAAAAGACAAACTTTGATTCTATCAATAGTGGTA
AGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGTATCCTAATCAAGGGAATGTGTTTT
TAGTTTCCAATCTCAAAAAAAATGGACACTATTACCAGAATCAATGCATGTGTTACTAAAGGGAC
AAACTTTGATTTTAAGGAAAATAGCGCAAAGAAAATATTTTCATGCCGAAGAAAAACATCAATAT
CATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCCACGTT
GGACTCATTTGAGGCTCGAACATTGATTTCAAGG
Found at i:692173 original size:475 final size:473
Alignment explanation
Indices: 690817--692620 Score: 2155
Period size: 475 Copynumber: 3.8 Consensus size: 473
690807 GGCTCGAACA
* * * *
690817 TTGATTTCAAGGAAAATAAGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATGTCATTT
1 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATATCATTT
* * * * * * * *
690882 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATGACAAAATAAATGAAGATCCTTAGTAAAAT
66 ATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAATCATT-CTAGAAT
* * * *
690947 CTATGTTTGTATCATTTTGAGGCATGAACTTAGGCTTTTCAAAAATTGGTGGGAAGAAAGCGTTT
129 CCATGTTTGTCTCA-TTTGAGGCACGAACTTA-GATTTTCAAAAATTGGTGGGAAGAAAGCGTTT
* *
691012 CTCGCAAAACCAAAGCATCAATACCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
192 CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
* * * *
691077 CTGAAAAGAATGGAGATTAGTATGAATATTCATGTTTCTCTTATTTAAAAGACAAACTTTGATTC
257 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
691142 TATCAAT-A--GTGG-TAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA
322 TATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAA
* * * * * * * *
691203 TCAAGGGAATGTGTTTTTAGTTTCCAATCTTGAAAAAAATGGACACTATTATGAGAATCAATGCC
387 TTAAAGGAATGTGTTTTTGGTTTCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCT
* * * *
691268 TGTGTTACTAAAGGGA-CAGACT
452 TGTCTTATTTAAGGGATCA-AAT
* * *
691290 TTGATTTTAAGGAAAATAGCGCAAAGAAAATATTTTCATGCCGAAGAAAGA-CATCAATATCATT
1 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCCAAAGAAA-ACCATCAATATCATT
** *
691354 TATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-----AATGA----AG-ATC
65 TATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAATCATTCTAGAATC
* * * * **
691409 CATGTTGGACTCATTTGAGGCTCGAACCTT-GACTTTACAAAAATTGG-GGAGAAGAAAGTTTTT
130 CATGTTTGTCTCATTTGAGGCACGAA-CTTAGA-TTTTCAAAAATTGGTGG-GAAGAAAGCGTTT
* * * * * * *
691472 CTTGCGAAAGCAAAGCATCAATATCGTCTATCCTAAT-ACGAAGCCTATGTTTATGGTGCCTAAC
192 CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGA-GAAGACTATGTTTATGGTGCCTAAT
** *
691536 CCTTTAAAGAATTGGGGATTATTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
256 CCTGAAAAGAA-TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* ** * * * *
691601 TCTATCATTAACAAT-GTAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATTTCATGTATCCT
320 TCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCATGTATCCT
* *
691665 AA-TAAAGGGAATTTGTTTTTGGTTTCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAAT
385 AATTAAA-GGAATGTGTTTTTGGTTTCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAAT
*
691729 GCTTGTCTTATTTAA-CGATCAAAT
449 GCTTGTCTTATTTAAGGGATCAAAT
*
691753 TATGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAACCATCAATATCATT
1 T-TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATATCATT
* *
691818 TATCCTAATAAAGAGAATGTGTTTATAGTACCTAATCACAAAATGAATCAAAATCATTTCTAGAA
65 TATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAATCA-TTCTAGAA
* * * *
691883 TCCATGTTTGTCTCATTTGAGGCACGAACGTAGATTTTGAAAAGTTGGTGGGAAAAAAGCGTTTC
128 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGATTTTCAAAAATTGGTGGGAAGAAAGCGTTTC
* * * * *
691948 TTGCAAAAACAAAGCATCAATATCGTGTATCTTTATGAGAAGACTAGGTTTATGGTGCCTAGTCC
193 TTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * *
692013 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTGAGAGGCAAACTTTGATTCT
258 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
692078 ATCAATAATGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCATGTATCCCAAT
323 ATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAT
* *
692143 TAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGCATCAATGCTT
388 TAAAGGAATGTGTTTTTGGTTTCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTT
* *
692208 GCCTTATTTAAGGGGT-AAACT
453 GTCTTATTTAAGGGATCAAA-T
* * * * *
692229 TTGATTTTAAGGAAAAGAGGGCAAAAAAAAGATTTTCATGCAAAAAAAAAAATCATCAATATCAT
1 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC--CAAAGAAAACCATCAATATCAT
*
692294 TTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATTAAGATCATTGCTAGA
64 TTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-TAAAATCATT-CTAGA
** * * * * *
692359 ATCCACATTTATCTCTTTTGAGGCACGAACTTAGACTTTACAAATATTGGTGGGAAGAAAGCTTT
127 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-TTTTCAAAAATTGGTGGGAAGAAAGCGTT
** * * *
692424 TCTTGTGAAACCAAAGCATTAATATCATATATCCTTATGAGAAGACTATGTTTATGGTGCATAAT
191 TCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * *
692489 CCTTAAAAGAGTAGGGATTAGTATTAGTATTCATGTTTGTCTTATTTAAGAAATAAACTTTGATT
256 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
692554 CTATCAATAACGG-CGAAAAGAAAAGCTTCTCTTGC-AACACCAAAGCATCAATGTCAGGTATCT
321 CTATCAATAACGGTGGAAAA-AAAAGCTTCTCTTGCGAA-ACCAAAGCATCAATGTCATGTATCC
692617 TAAT
384 TAAT
692621 GAAGGGTGTA
Statistics
Matches: 1135, Mismatches: 156, Indels: 75
0.83 0.11 0.05
Matches are distributed among these distances:
459 4 0.00
460 97 0.09
461 71 0.06
462 2 0.00
463 9 0.01
464 207 0.18
467 2 0.00
470 4 0.00
473 96 0.08
474 61 0.05
475 240 0.21
476 41 0.04
477 113 0.10
478 188 0.17
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCCAAAGAAAACCATCAATATCATTT
ATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAATCATTCTAGAATCC
ATGTTTGTCTCATTTGAGGCACGAACTTAGATTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTG
CAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
AATAACGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATTAA
AGGAATGTGTTTTTGGTTTCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTC
TTATTTAAGGGATCAAAT
Found at i:692933 original size:20 final size:20
Alignment explanation
Indices: 692908--692972 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
692898 TCACAATTTA
692908 TATCGATACATTGTTCATTG
1 TATCGATACATTGTTCATTG
692928 TATCGATACATTG-T-A---
1 TATCGATACATTGTTCATTG
692943 T-T-GATACATTGTTCATTG
1 TATCGATACATTGTTCATTG
692961 TATCGATACATT
1 TATCGATACATT
692973 CTAGGTTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 9 0.24
14 2 0.05
15 2 0.05
18 2 0.05
19 2 0.05
20 21 0.55
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (20 bp):
TATCGATACATTGTTCATTG
Found at i:692972 original size:13 final size:13
Alignment explanation
Indices: 692923--692954 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
692913 ATACATTGTT
692923 CATTGTATCGATA
1 CATTGTATCGATA
*
692936 CATTGTATTGATA
1 CATTGTATCGATA
692949 CATTGT
1 CATTGT
692955 TCATTGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:695416 original size:28 final size:29
Alignment explanation
Indices: 695375--695455 Score: 121
Period size: 28 Copynumber: 2.9 Consensus size: 29
695365 CATCAATTTT
*
695375 TCATAATCGGGGATACTCCAACCCCGTTA
1 TCATCATCGGGGATACTCCAACCCCGTTA
*
695404 T-TTCATCGGGGATACTCCAACCCCGTTA
1 TCATCATCGGGGATACTCCAACCCCGTTA
*
695432 TCATC-TCGGGAATACTCCAACCCC
1 TCATCATCGGGGATACTCCAACCCC
695456 AATTTTATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
28 44 0.94
29 3 0.06
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.25
Consensus pattern (29 bp):
TCATCATCGGGGATACTCCAACCCCGTTA
Found at i:695494 original size:79 final size:79
Alignment explanation
Indices: 695408--695578 Score: 195
Period size: 79 Copynumber: 2.2 Consensus size: 79
695398 CCGTTATTTC
* *
695408 ATCGGGGATACTCCAACCCCGTTATCATCT-CGGGAATACTCCAACCCCA-ATTTTATTT-TTAC
1 ATCGGGGATACTCCAACCCCGTTAT-ATCTGAGGGAATACTCCAA-CCCAGATTTTATTTCTCA-
* *
695470 AACATCAATTTTTCATA
63 AACATCAATTTTCCACA
* * * * * *
695487 ATCGGGGATACTCCAATCTCGTTATTTCTGAGGGGATACTCTAACCCAGGTTTTATTTCTCAAAC
1 ATCGGGGATACTCCAACCCCGTTATATCTGAGGGAATACTCCAACCCAGATTTTATTTCTCAAAC
*
695552 ATCAATTTTCCCCA
66 ATCAATTTTCCACA
695566 ATCGGGGATACTC
1 ATCGGGGATACTC
695579 TAACTCCGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 7 0.09
79 69 0.88
80 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATATCTGAGGGAATACTCCAACCCAGATTTTATTTCTCAAAC
ATCAATTTTCCACA
Found at i:695511 original size:107 final size:107
Alignment explanation
Indices: 695336--695533 Score: 308
Period size: 107 Copynumber: 1.9 Consensus size: 107
695326 CATCTTGAGG
**
695336 ATACTCCAACCCTGATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCG
1 ATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCG
*
695401 TTATTTCAT-CGGGGATACTCCAACCCCGTTATCATCTCGGGA
66 TTATTTC-TGAGGGGATACTCCAACCCCGTTATCATCTCGGGA
* * * *
695443 ATACTCCAACCCCAATTTTATTTTTACAACATCAATTTTTCATAATCGGGGATACTCCAATCTCG
1 ATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCG
*
695508 TTATTTCTGAGGGGATACTCTAACCC
66 TTATTTCTGAGGGGATACTCCAACCC
695534 AGGTTTTATT
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 1 0.01
107 81 0.99
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (107 bp):
ATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCG
TTATTTCTGAGGGGATACTCCAACCCCGTTATCATCTCGGGA
Found at i:695681 original size:51 final size:51
Alignment explanation
Indices: 695518--695684 Score: 203
Period size: 51 Copynumber: 3.3 Consensus size: 51
695508 TTATTTCTGA
* * * *
695518 GGGGATACTCTAAC-CCAGGTTTTATTTCTC-AAACATCAATTTTCCCCAATC
1 GGGGATACTCCAACTCC-GATTTTATTTC-CAAAACACCAATTTTCCACAATC
* * * *
695569 GGGGATACTCTAACTCCGATTTTATTTCTAAAACACTAATTTTCCATAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
**
695620 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTTACAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
*
695671 AGGGATACTCCAAC
1 GGGGATACTCCAAC
695685 CTCGATATTT
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
51 99 0.98
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
Found at i:695850 original size:28 final size:28
Alignment explanation
Indices: 695778--695851 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
695768 TCTCACAATC
* * *
695778 GGGGATACTCCAACCCCGTTATTTCTGC
1 GGGGATACTCCAACCCTGCTATTTCTGA
*
695806 GGGGATACTTCAACCCTGCTATTT-TCGA
1 GGGGATACTCCAACCCTGCTATTTCT-GA
695834 GGGGATACTCCAACCCTG
1 GGGGATACTCCAACCCTG
695852 ATTTTATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (28 bp):
GGGGATACTCCAACCCTGCTATTTCTGA
Found at i:695858 original size:107 final size:107
Alignment explanation
Indices: 695620--695908 Score: 289
Period size: 107 Copynumber: 2.7 Consensus size: 107
695610 TTCCATAATC
* * * *** * *
695620 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTTACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCCGAAACATTGATTCTCTACAATCAGGGATACTCCAAC
* * * *
695685 CTCGATATTTCATCGAGATACTCCAACCCTATTATTTTTGAG
66 CCCGTTATTTCATCGAGATACTCCAACCCTACTATTTTCGAG
* * * *
695727 GGGGATACTCCAACCCCGGCTTTA-TTCCTAAACTGTTGACTTCTC-ACAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTCCGAAAC-ATTGA-TTCTCTACAATCAGGGATACTCCA
* * *
695790 ACCCCGTTATTTC-TGCGGGGATACTTCAACCCTGCTATTTTCGA-
64 ACCCCGTTATTTCAT-C-GAGATACTCCAACCCTACTATTTTCGAG
* * * * *
695834 GGGGATACTCCAACCCTGATTTTATTTTCGAAACATTGATTTTCTATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCCGAAACATTGATTCTCTACAATCAGGGATACTCCAAC
*
695899 CCTGTTATTT
66 CCCGTTATTT
695909 TCGAGAGGAT
Statistics
Matches: 148, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
106 13 0.09
107 103 0.70
108 32 0.22
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCGAAACATTGATTCTCTACAATCAGGGATACTCCAAC
CCCGTTATTTCATCGAGATACTCCAACCCTACTATTTTCGAG
Found at i:695938 original size:79 final size:78
Alignment explanation
Indices: 695807--695973 Score: 230
Period size: 79 Copynumber: 2.1 Consensus size: 78
695797 TATTTCTGCG
* * *
695807 GGGATACTTCAACCCTGCTATTTTCGAGGGGATACTCCAACCCTGATTTTATTTTC-GAAACATT
1 GGGATACTCCAACCCTGCTATTTTCGAGAGGATACTCCAACCCTGATTTTATTTTCAG-AACACT
*
695871 GATTTTCTATAATC
65 GATTTTCCATAATC
* *
695885 AGGGATACTCCAACCCTGTTATTTTCGAGAGGATACTCTAA-CCTCGATTTTATTTTCAGAACAC
1 -GGGATACTCCAACCCTGCTATTTTCGAGAGGATACTCCAACCCT-GATTTTATTTTCAGAACAC
695949 TGATTTTCCATAATC
64 TGATTTTCCATAATC
695964 GGAGATACTC
1 GG-GATACTC
695974 TAGCCCCACT
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
78 5 0.06
79 73 0.92
80 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (78 bp):
GGGATACTCCAACCCTGCTATTTTCGAGAGGATACTCCAACCCTGATTTTATTTTCAGAACACTG
ATTTTCCATAATC
Found at i:703124 original size:298 final size:298
Alignment explanation
Indices: 702687--703284 Score: 1169
Period size: 298 Copynumber: 2.0 Consensus size: 298
702677 AGGTAAGAAG
702687 GACGGAGAAGTTAGAAAGAAGCCACAGTCAAGAATCGATGGGGGAGCTAGTTCATCCTGAACTCG
1 GACGGAGAAGTTAGAAAGAAGCCACAGTCAAGAATCGATGGGGGAGCTAGTTCATCCTGAACTCG
*
702752 TGCAGATCTAGAGCTAGAAAGGTTTGTCATCGAACAGGATTGTGAGATTGTAAGGAATGTCGAGG
66 TGCAGATCTAGAGCTAGAAAGGTTTGTCACCGAACAGGATTGTGAGATTGTAAGGAATGTCGAGG
*
702817 AATTCAGAGTACCAGTGATTACGATCTGGCATATCCTAGAAAGGCCGAGTTGATTAGTGGGGTTA
131 AACTCAGAGTACCAGTGATTACGATCTGGCATATCCTAGAAAGGCCGAGTTGATTAGTGGGGTTA
702882 TGATGACGGGAGAAGAGACGGATAATTTTTGCAACTTCCACACCATCCGTGGTCACAACCTTCAA
196 TGATGACGGGAGAAGAGACGGATAATTTTTGCAACTTCCACACCATCCGTGGTCACAACCTTCAA
702947 GCATGCAAAGAGGTCCATGCCTTAGTGCAGAGGTTGAT
261 GCATGCAAAGAGGTCCATGCCTTAGTGCAGAGGTTGAT
702985 GACGGAGAAGTTAGAAAGAAGCCACAGTCAAGAATCGATGGGGGAGCTAGTTCATCCTGAACTCG
1 GACGGAGAAGTTAGAAAGAAGCCACAGTCAAGAATCGATGGGGGAGCTAGTTCATCCTGAACTCG
703050 TGCAGATCTAGAGCTAGAAAGGTTTGTCACCGAACAGGATTGTGAGATTGTAAGGAATGTCGAGG
66 TGCAGATCTAGAGCTAGAAAGGTTTGTCACCGAACAGGATTGTGAGATTGTAAGGAATGTCGAGG
703115 AACTCAGAGTACCAGTGATTACGATCTGGCATATCCTAGAAAGGCCGAGTTGATTAGTGGGGTTA
131 AACTCAGAGTACCAGTGATTACGATCTGGCATATCCTAGAAAGGCCGAGTTGATTAGTGGGGTTA
703180 TGATGACGGGAGAAGAGACGGATAATTTTTGCAACTTCCACACCATCCGTGGTCACAACCTTCAA
196 TGATGACGGGAGAAGAGACGGATAATTTTTGCAACTTCCACACCATCCGTGGTCACAACCTTCAA
*
703245 GCATGCAAAGAGTTCCATGCCTTAGTGCAGAGGTTGAT
261 GCATGCAAAGAGGTCCATGCCTTAGTGCAGAGGTTGAT
703283 GA
1 GA
703285 AGGAAGGTAG
Statistics
Matches: 297, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
298 297 1.00
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (298 bp):
GACGGAGAAGTTAGAAAGAAGCCACAGTCAAGAATCGATGGGGGAGCTAGTTCATCCTGAACTCG
TGCAGATCTAGAGCTAGAAAGGTTTGTCACCGAACAGGATTGTGAGATTGTAAGGAATGTCGAGG
AACTCAGAGTACCAGTGATTACGATCTGGCATATCCTAGAAAGGCCGAGTTGATTAGTGGGGTTA
TGATGACGGGAGAAGAGACGGATAATTTTTGCAACTTCCACACCATCCGTGGTCACAACCTTCAA
GCATGCAAAGAGGTCCATGCCTTAGTGCAGAGGTTGAT
Found at i:708709 original size:15 final size:14
Alignment explanation
Indices: 708681--708748 Score: 70
Period size: 13 Copynumber: 4.9 Consensus size: 14
708671 TTTTTTTTTA
*
708681 AAAAAAAGAAAAAAC
1 AAAAAAA-ACAAAAC
708696 ATAAAAAAACAAAAC
1 A-AAAAAAACAAAAC
708711 AAAAAAAACAAAA-
1 AAAAAAAACAAAAC
708724 AAAAAACAA-AAAA-
1 AAAAAA-AACAAAAC
*
708737 AAACAAAACAAA
1 AAAAAAAACAAA
708749 GAAAAAAGAG
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
12 2 0.04
13 18 0.38
14 14 0.29
15 8 0.17
16 6 0.12
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (14 bp):
AAAAAAAACAAAAC
Found at i:708715 original size:30 final size:30
Alignment explanation
Indices: 708681--708755 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
708671 TTTTTTTTTA
* *
708681 AAAAAAAGAAAAAACATAAA-AAAACAAAAC
1 AAAAAAAGAAAAAA-AAAAACAAAAAAAAAC
708711 AAAAAAA-ACAAAAAAAAAACAAAAAAAAAC
1 AAAAAAAGA-AAAAAAAAAACAAAAAAAAAC
708741 AAAACAAAGAAAAAA
1 AAAA-AAAGAAAAAA
708756 GAGAGAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 5 0.13
30 25 0.64
31 8 0.21
32 1 0.03
ACGTcount: A:0.87, C:0.09, G:0.03, T:0.01
Consensus pattern (30 bp):
AAAAAAAGAAAAAAAAAAACAAAAAAAAAC
Found at i:708737 original size:35 final size:35
Alignment explanation
Indices: 708680--708755 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
708670 TTTTTTTTTT
* *
708680 AAAAAAAAGAAAAAACATAAAAAAACAAAACAAA-
1 AAAAAAAAAAAAAAACAAAAAAAAACAAAACAAAG
708714 AAAAACAAAAAAAAAACAAAAAAAAACAAAACAAAG
1 AAAAA-AAAAAAAAAACAAAAAAAAACAAAACAAAG
708750 AAAAAA
1 AAAAAA
708756 GAGAGAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 5 0.13
35 28 0.74
36 5 0.13
ACGTcount: A:0.87, C:0.09, G:0.03, T:0.01
Consensus pattern (35 bp):
AAAAAAAAAAAAAAACAAAAAAAAACAAAACAAAG
Found at i:708766 original size:1 final size:1
Alignment explanation
Indices: 708680--708755 Score: 62
Period size: 1 Copynumber: 76.0 Consensus size: 1
708670 TTTTTTTTTT
* * * * * * * *
708680 AAAAAAAAGAAAAAACATAAAAAAACAAAACAAAAAAAACAAAAAAAAAACAAAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
708745 CAAAGAAAAAA
1 AAAAAAAAAAA
708756 GAGAGAAAAA
Statistics
Matches: 55, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.87, C:0.09, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:709952 original size:20 final size:20
Alignment explanation
Indices: 709924--709961 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
709914 TGATTTCCCG
709924 TTGTAATGTATCAATACAAT
1 TTGTAATGTATCAATACAAT
* *
709944 TTGTGATGTATCGATACA
1 TTGTAATGTATCAATACA
709962 TGCATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (20 bp):
TTGTAATGTATCAATACAAT
Found at i:710046 original size:19 final size:20
Alignment explanation
Indices: 710003--710053 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
709993 TACAAGCCAA
*
710003 TGTATCGATACATTTTATGG
1 TGTATCGATACATCTTATGG
710023 TGTATCGATACATACTT-T-G
1 TGTATCGATACAT-CTTATGG
710042 TGTATCGATACA
1 TGTATCGATACA
710054 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.45
20 14 0.48
21 2 0.07
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATCTTATGG
Found at i:712432 original size:21 final size:21
Alignment explanation
Indices: 712386--712432 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
712376 TTTGAAGCTG
712386 ATTTTGATGAAAAACAATGTA
1 ATTTTGATGAAAAACAATGTA
712407 A-TTTGAAGTGAAAAACAA-G-A
1 ATTTTG-A-TGAAAAACAATGTA
712427 ATTTTG
1 ATTTTG
712433 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 7 0.30
22 10 0.43
ACGTcount: A:0.47, C:0.04, G:0.17, T:0.32
Consensus pattern (21 bp):
ATTTTGATGAAAAACAATGTA
Found at i:712572 original size:13 final size:13
Alignment explanation
Indices: 712556--712592 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
712546 AATCTCCTTA
712556 TATCGATACAGTG
1 TATCGATACAGTG
712569 TATCGATACTA-TG
1 TATCGATAC-AGTG
712582 TATCGATACAG
1 TATCGATACAG
712593 AGAATACTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:718777 original size:19 final size:20
Alignment explanation
Indices: 718734--718784 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
718724 TACAAGCCAA
*
718734 TGTATCGATACATTTTATGG
1 TGTATCGATACATCTTATGG
718754 TGTATCGATACATACTT-T-G
1 TGTATCGATACAT-CTTATGG
718773 TGTATCGATACA
1 TGTATCGATACA
718785 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.45
20 14 0.48
21 2 0.07
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATCTTATGG
Found at i:719758 original size:60 final size:60
Alignment explanation
Indices: 719665--719952 Score: 347
Period size: 60 Copynumber: 4.9 Consensus size: 60
719655 GAGAAGGATG
* *
719665 CCTTTCAAAGCCCACATAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTCT
* **
719725 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGTGCAAAATGCCTTCT
1 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTCT
* * ** * *
719785 CCATTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGTAGGA------CG
1 CCTTTCAAAGCCCACACAAGCTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGATGCCTTCT
* * *
719840 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTTAAAGAGCATGACGCCTTCT
1 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTCT
* * *
719900 CTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGA
1 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGA
719953 CACTCTCTCC
Statistics
Matches: 192, Mismatches: 27, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
54 18 0.09
55 28 0.15
59 3 0.02
60 109 0.57
61 34 0.18
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (60 bp):
CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTCT
Found at i:719861 original size:115 final size:115
Alignment explanation
Indices: 719668--719953 Score: 360
Period size: 115 Copynumber: 2.4 Consensus size: 115
719658 AAGGATGCCT
* * *
719668 TTCAAAGCCCACATAAGCTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTC
1 TTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGA---C---GCCTTTC
* *
719731 AAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGTGCAAAATGCCTTCTCCA
59 AAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAAAACGCCTTCTCCA
* ** *
719788 TTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCC
1 TTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCC
* ** **
719853 ACACAAGCTGGTGGCACCTTCAGTCCTTAAAGAGCATGACGCCTTCTCTT
66 ACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAAAACGCCTTCTCCA
*
719903 TTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGAC
1 TTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGAC
719954 ACTCTCTCCT
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
115 102 0.69
118 1 0.01
119 2 0.01
120 24 0.16
121 18 0.12
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (115 bp):
TTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCC
ACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAAAACGCCTTCTCCA
Found at i:720105 original size:154 final size:155
Alignment explanation
Indices: 719822--720206 Score: 560
Period size: 154 Copynumber: 2.5 Consensus size: 155
719812 CATTTTTCAG
* * * *
719822 TCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCAC-CTTCAGTCCTTAAAGA
1 TCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTCTCCAGTCCTCAAAGA
* *
719886 GCATGACGCCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
66 GCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
*
719951 GACA-CTCTCTCCTTTCACCCTTTAA
131 GACACCT-TCACCTTTCACCCTTTAA
* * *
719976 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACCCAAGTTGGTGGCACTCCCCAGTCCTCAAAGA
1 TCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTCTCCAGTCCTCAAAGA
*
720041 GCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAGGAGCAG
66 GCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
*
720105 GACACCTTCACCTTTCACCCTTTAG
131 GACACCTTCACCTTTCACCCTTTAA
* * * * * *
720130 TCCTCAAAGAGTAGGATGCCTTTTAAAGTCTACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGA
1 TCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTCTCCAGTCCTCAAAGA
* *
720195 GCAGGATGCCTT
66 GCAAGACGCCTT
720207 TCAAAGCCCA
Statistics
Matches: 206, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
154 147 0.71
155 59 0.29
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (155 bp):
TCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTCTCCAGTCCTCAAAGA
GCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
GACACCTTCACCTTTCACCCTTTAA
Found at i:720220 original size:55 final size:55
Alignment explanation
Indices: 720127--720431 Score: 247
Period size: 55 Copynumber: 5.5 Consensus size: 55
720117 TTTCACCCTT
* * * * *
720127 TAGTCCTCAAAGAGTAGGATGCCTTTTAAAGTCTACACAAGTTGGTGGCATTTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTC
** * *
720182 TAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGCCGATGGCACCTT-
1 TAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTC
* ** * * *
720236 TAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACTAGTTGGTCGCATTTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTC
* * * * * * * *
720291 CAATCCTCAAAGAACAAGACGCCTTTCAAAGCCCACACAAGCTGGTGACACCTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTC
* * * * * * *
720346 -AGTCCTTAGAGAGTAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGTTAGCATCTTC
1 TAGTCCTCAAAGAGCAGG--A----TGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTC
* *
720406 CAGTCCTCAAGGAGCAGGATG-CTTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTC
720432 TCCTTGTAAA
Statistics
Matches: 193, Mismatches: 49, Indels: 17
0.75 0.19 0.07
Matches are distributed among these distances:
54 59 0.31
55 91 0.47
56 1 0.01
59 1 0.01
60 28 0.15
61 13 0.07
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (55 bp):
TAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTC
Found at i:720315 original size:109 final size:109
Alignment explanation
Indices: 720123--720415 Score: 316
Period size: 109 Copynumber: 2.6 Consensus size: 109
720113 CACCTTTCAC
** * * * * * *
720123 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTAAAGTCTACACAAGTTGGTGGCATTTTCTAGTCC
1 CCTTTAGTCCTCAAAGAGTAGGACACCTTTCAAAGCCCACACAAGTTGGTCGCATTTTCCAATCC
* * * *
720188 TCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGCCGATGGCA
66 TCAAAGAACAAGACGCCTTTCAAAGCCCACACAAGCCGATGACA
* * *
720232 CCTTTAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACTAGTTGGTCGCATTTTCCAATCC
1 CCTTTAGTCCTCAAAGAGTAGGACACCTTTCAAAGCCCACACAAGTTGGTCGCATTTTCCAATCC
* *
720297 TCAAAGAACAAGACGCCTTTCAAAGCCCACACAAGCTGGTGACA
66 TCAAAGAACAAGACGCCTTTCAAAGCCCACACAAGCCGATGACA
* * * * * *
720341 CCTTCAGTCCTTAGAGAGTAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGTTAGCATCTTC
1 CCTTTAGTCCTCAAAGAGTAGGACACC-TTT-C----AAAGCCCACACAAGTTGGTCGCATTTTC
*
720406 CAGTCCTCAA
60 CAATCCTCAA
720416 GGAGCAGGAT
Statistics
Matches: 151, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
109 114 0.75
110 3 0.02
111 1 0.01
115 33 0.22
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (109 bp):
CCTTTAGTCCTCAAAGAGTAGGACACCTTTCAAAGCCCACACAAGTTGGTCGCATTTTCCAATCC
TCAAAGAACAAGACGCCTTTCAAAGCCCACACAAGCCGATGACA
Found at i:720454 original size:61 final size:60
Alignment explanation
Indices: 720367--720482 Score: 135
Period size: 61 Copynumber: 1.9 Consensus size: 60
720357 AGTAGGACAC
* * * *
720367 CTTTTCCTTTTAAAGCCCACACAAGTTGTTAGCATCTTCC-AGTCCTCAAGGAGCAGGATG
1 CTTTTCCTTGTAAAGCCCACACAAGTTGGTAGCA-CCTCCTAGTCCCCAAGGAGCAGGATG
** * *
720427 CTTTCTCCTTGTAAAGCCCGTATAAGTTGGTGGCACCTCCTAGTCCCCAAGGAGCA
1 CTTT-TCCTTGTAAAGCCCACACAAGTTGGTAGCACCTCCTAGTCCCCAAGGAGCA
720483 TGACCCATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
60 8 0.17
61 38 0.83
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (60 bp):
CTTTTCCTTGTAAAGCCCACACAAGTTGGTAGCACCTCCTAGTCCCCAAGGAGCAGGATG
Found at i:723581 original size:28 final size:29
Alignment explanation
Indices: 723531--723610 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 29
723521 CATCAATTTT
* * **
723531 TCATAATCGGGGATAGTGTAACCCAGTTA
1 TCATCATCGGGGATACTCCAACCCAGTTA
* *
723560 T-TTCATCGGGGATACTCCAACCCCGTTA
1 TCATCATCGGGGATACTCCAACCCAGTTA
*
723588 TCATC-TCAGGGATACTCCAACCC
1 TCATCATCGGGGATACTCCAACCC
723611 CGATTTTATT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 39 0.93
29 3 0.07
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (29 bp):
TCATCATCGGGGATACTCCAACCCAGTTA
Found at i:723667 original size:107 final size:107
Alignment explanation
Indices: 723481--723688 Score: 287
Period size: 107 Copynumber: 1.9 Consensus size: 107
723471 TCTAGATTTT
* * *
723481 TCATCTCGAGGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATA
1 TCATCTCGAGGATACTCCAACCCCGATTTTATTTCCAAAACATCAAATTTTCATAATCGAGGATA
* ** *
723546 GTGTAACCCAGTTATTTCAT-CGGGGATACTCCAACCCCGTTA
66 CTCCAACCCAGTTATTTC-TGAGGGGATACTCCAACCCCGTTA
*
723588 TCATCTC-AGGGATACTCCAACCCCGATTTTATTTCCACAACATCAAATTTTCATAATCGAGGAT
1 TCATCTCGA-GGATACTCCAACCCCGATTTTATTTCCAAAACATCAAATTTTCATAATCGAGGAT
*
723652 ACTCCAATCTC-GTTATTTCTGAGGGGATACTCCAACC
65 ACTCCAA-CCCAGTTATTTCTGAGGGGATACTCCAACC
723689 TCATTTTTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
106 2 0.02
107 85 0.96
108 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (107 bp):
TCATCTCGAGGATACTCCAACCCCGATTTTATTTCCAAAACATCAAATTTTCATAATCGAGGATA
CTCCAACCCAGTTATTTCTGAGGGGATACTCCAACCCCGTTA
Found at i:723738 original size:79 final size:79
Alignment explanation
Indices: 723564--723738 Score: 214
Period size: 79 Copynumber: 2.2 Consensus size: 79
723554 CAGTTATTTC
*
723564 ATCGGGGATACTCCAACCCCGTTATCATCTCAGGGATACTCCAACCCCGATTTTATTTCCACAAC
1 ATCGGGGATACTCCAATCCCGTTATCATCTCAGGGATACTCCAACCCCGATTTTATTTCCACAAC
*
723629 ATCAAATTTTCATA
66 ATCAAATTTTCACA
* * * * *
723643 ATCGAGGATACTCCAATCTCGTTAT-TTCTGAGGGGATACTCCAACCTC-ATTTTTATTTCTCA-
1 ATCGGGGATACTCCAATCCCGTTATCATCTCA-GGGATACTCCAACCCCGA-TTTTATTTC-CAC
723705 AACATC-AATTTTCCACA
63 AACATCAAATTTT-CACA
*
723722 ATCGGGGATTCTCCAAT
1 ATCGGGGATACTCCAAT
723739 TCCGATTTTA
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 11 0.13
79 70 0.84
80 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAATCCCGTTATCATCTCAGGGATACTCCAACCCCGATTTTATTTCCACAAC
ATCAAATTTTCACA
Found at i:723765 original size:51 final size:51
Alignment explanation
Indices: 723693--723836 Score: 150
Period size: 51 Copynumber: 2.8 Consensus size: 51
723683 CCAACCTCAT
* * * *
723693 TTTTATTTCTC-AAACATCAATTTTCCACAATCGGGGATTCTCCAATTCCGA
1 TTTTA-TTCTCAAAACACCAATTTTCCACAATCGGGGATACTCAAACTCCGA
* * *
723744 TTTTAATTCT-ACAACACCAATTTTCCATAATCGGGGATACTCAAACTCTGA
1 TTTT-ATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCAAACTCCGA
* **
723795 TTTTATTTTCAAAACACCAATTTTTTACAATTC-GGGATACTC
1 TTTTATTCTCAAAACACCAATTTTCCACAA-TCGGGGATACTC
723837 CAACCCCGGT
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
50 4 0.05
51 70 0.91
52 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.38
Consensus pattern (51 bp):
TTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCAAACTCCGA
Found at i:723860 original size:28 final size:29
Alignment explanation
Indices: 723828--723899 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
723818 TTTACAATTC
* *
723828 GGGATACTCCAACCCCGGTA-TTTC-ATTG
1 GGGATACTCCAACCCCAGTATTTTCGA-GG
* *
723856 GGGATACTCTAACCCCATTATTTTCGAGG
1 GGGATACTCCAACCCCAGTATTTTCGAGG
723885 GGGATACTCCAACCC
1 GGGATACTCCAACCC
723900 TGGCTTTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 17 0.46
29 19 0.51
30 1 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (29 bp):
GGGATACTCCAACCCCAGTATTTTCGAGG
Found at i:724021 original size:31 final size:28
Alignment explanation
Indices: 723935--724008 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
723925 TCTCACAATC
* *
723935 GGGGATACTCCAACCCTGTTATTTCTGC--
1 GGGGATACTCCAACCCCGCTATTT-T-CAA
723963 GGGGATACTCCAACCCCGCTATTTTCAA
1 GGGGATACTCCAACCCCGCTATTTTCAA
723991 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
724009 ATTTTATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 40 0.95
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGCTATTTTCAA
Found at i:724049 original size:79 final size:78
Alignment explanation
Indices: 723964--724139 Score: 230
Period size: 79 Copynumber: 2.2 Consensus size: 78
723954 TATTTCTGCG
723964 GGGATACTCCAACCCCGCTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTTCAAAACA-TC
1 GGGATACTCCAACCCCGCTATTTTCAAGGGGATACTCCAACCCCGATTTT-TTTTCAAAACACT-
724028 GA-TTTTCTATAATCA
64 GATTTTTC-ATAATCA
* * * * ***
724043 GGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCGACCCCGATTTTTTTTTGGAACACTGA
1 GGGATACTCCAACCCCGCTATTTTCAAGGGGATACTCCAACCCCGATTTTTTTTCAAAACACTGA
*
724108 TTTTTCATAATCG
66 TTTTTCATAATCA
*
724121 GGGATACTCCAGCCCCGCT
1 GGGATACTCCAACCCCGCT
724140 GTTATCCCCA
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 32 0.38
79 52 0.62
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (78 bp):
GGGATACTCCAACCCCGCTATTTTCAAGGGGATACTCCAACCCCGATTTTTTTTCAAAACACTGA
TTTTTCATAATCA
Found at i:724058 original size:107 final size:107
Alignment explanation
Indices: 723776--724087 Score: 337
Period size: 107 Copynumber: 2.9 Consensus size: 107
723766 TTCCATAATC
* * * * *
723776 GGGGATACTCAAACTCTGATTTTATTTTCAAAACACCAATTTTTTACAATTCGGGATACTCCAAC
1 GGGGATACTCCAACCCTGATTTTATTTTCAAAACATCGATTTTCTACAA-TCGGGATACTCCAAC
* * * * ** *
723841 CCCGGTATTTCAT-TGGGGATACTCTAACCCCATTATTTTCGAG
65 CCTGTTATTTC-TGAGGGGATACTCCAACCCCGCTATTTTCGAA
** * * *
723884 GGGGATACTCCAACCCTGGCTTTA-TTCCTAAAATATTGA-TTTCTCACAATCGGGGATACTCCA
1 GGGGATACTCCAACCCTGATTTTATTTTC-AAAACATCGATTTTCT-ACAATC-GGGATACTCCA
*
723947 ACCCTGTTATTTCTGCGGGGATACTCCAACCCCGCTATTTTC-AA
63 ACCCTGTTATTTCTGAGGGGATACTCCAACCCCGCTATTTTCGAA
* *
723991 GGGGATACTCCAACCCCGATTTTATTTTCAAAACATCGATTTTCTATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCTGATTTTATTTTCAAAACATCGATTTTCTACAATC-GGGATACTCCAAC
*
724056 CCTGTTATTT-TCGAGGGGATACTCCGACCCCG
65 CCTGTTATTTCT-GAGGGGATACTCCAACCCCG
724088 ATTTTTTTTT
Statistics
Matches: 170, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
106 1 0.01
107 86 0.51
108 83 0.49
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (107 bp):
GGGGATACTCCAACCCTGATTTTATTTTCAAAACATCGATTTTCTACAATCGGGATACTCCAACC
CTGTTATTTCTGAGGGGATACTCCAACCCCGCTATTTTCGAA
Found at i:726009 original size:476 final size:475
Alignment explanation
Indices: 725117--732788 Score: 8766
Period size: 476 Copynumber: 16.2 Consensus size: 475
725107 AGGCATTGCA
* * * *
725117 TTTTTGGTTCCCAATATTGAAAAGAATGGTGACTGTTACAAGAATCAATGCTTGTCTTATTT-AA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * *
725181 GTGTCAAACATTGATTTTAAGGAATATAGGGCCAAA-AAAAGATTTTCATGCAAAAAAAATCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGG-CAAAGAAAAGATTTTCATGCAAAAAAAACCATC
* * * * *
725245 AATATCATTTATCTTAATGAGGAGGAATATGTTTATCGTTCCTAATCACAAAATGAATTAAGATC
129 AATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATC
* * * *
725310 GTTGCTAGAATCCATGTTTGTCTC-TTTAGAGGCACGAACTTAGACTATAT-AAATATTGGTGGG
193 CTTACTAGAATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACT-TTTCAAAAATTGGTGGG
* * * * *
725373 AAGAAAGCTTGTTC-TACGAAACCAAACCGTCAATATTGTGTATCCTTATGAGAAGACTATGTTT
256 AAGAAAGCGT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * * * *
725437 ATGGTGCATAATCCTTAAAAGAATAGGGATTAGTATGGGTATTCAGGGTTGTCTTATTTAAGAGA
320 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
*
725502 CAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGTATCAATG
385 CAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATG
725567 TCATGTATCCTAATGAAGGGAATGTG
450 TCATGTATCCTAATGAAGGGAATGTG
* * * * ** *
725593 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTTTTACGAGAATCAATTCTTGTCACATTT-AG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* *
725657 GTGTCAAACATTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAAAAAACCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAAAAACCATC
725722 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* * *
725787 TTACTAGAATCCATGTTTGTCTAATTTGAGGCACGGACTTAGACTTTTCAAAAACTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * * ** *
725852 AAAGCATTTCTTTCGAAGCCAAAGCATCAATATTGTGTATCCATATGAGAAGACTACATTTGTGG
259 AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * *
725917 TGTCTAATCCTGAAACGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGATACAAA
324 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
725982 CTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCAA
389 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
*
726047 GTATCCTAATGAAGGGAACGTG
454 GTATCCTAATGAAGGGAATGTG
* * * * * * *
726069 CTTTTGGTTCCCAATCTTGAGAAGAATGGAGACTTTTACAAGAATCAATTCTTGTCTTATTT-AG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * *
726133 GTGTCAAACATTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCGTGCCAAAGAAAACCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAAAAACCATC
* * *
726198 AATATCATTTATCTTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAATGAA-AGAAGATC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATA-AAGATC
* * *
726262 CTTACTAGAATCCATATTTGTCTAATTTGAGGCAC-AAGCTTAGACTTTTCGAAAATTGGT-GGA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTTCAAAAATTGGTGGGA
* ** * * * * * *
726325 A-AAATACAATTCATGCAAAACGAAAGCATCAATATCGTGTATCCTAATGAGAAGACCAGGTTTA
257 AGAAA-GCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
*
726389 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAAGAGAC
321 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * *
726454 AAACTTTGATTCTATCAATAATGGTGGAAAAAAAAGCTTCTCTTGTGAAACCAAAGCATCAACGT
386 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* * ** *
726519 CATGTATCCCAATTAATAGAATATG
451 CATGTATCCTAATGAAGGGAATGTG
* *
726544 TTTTTGGTTCCCAATCTCGAAAA-AATTAGAGACTGTTACAAGAATCAATGCTTGTCTTATTTAA
1 TTTTTGGTTCCCAATCTTGAAAAGAA-TAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAA
** *
726608 AGGTCAAACTTTGATTTTAAAAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCATC
65 AGGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAAAAAACCATC
* * * * * *
726673 AATATCATTTCTCTTATTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATTAAGATCA
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* ** ** * * * *
726738 TTGCTAGAATCCACATTTGTCTGTTTTGAGGCATGAACTTTGGCTTTACAAAAATTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * * * *
726803 AAAGC-TGTTCCTACGAAGCCAAAGTACCAATATTGTATATCCTTATGAGAAGACTATGTTTATG
259 AAAGCGT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * * * * * * * **
726867 GTGCAC-AATCCTTAAAAGATTAGGGATTTGTATGAGTACTCAGGTTGGTCCTATTTAACAGATG
323 GTGC-CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
726931 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAACTTCTCTTGCGACCCCAAAACATCAACGTC
387 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
*
726996 GTGTATCCTAATGAAGGGAATGTG
452 ATGTATCCTAATGAAGGGAATGTG
* * * *
727020 TTTTCGGTT-CCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
**
727084 GGAAAAACTTTGATTTTAAGGAAAAT-GAGGCAAAG-AAAGATTTTCATGCAAAAGAAAACCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATC
* * * *
727147 AATATCATTTATCCTAATGAGGAGAATATGTTTACAGTGCTTAATCACAAAATGAATGAAA-ATA
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAGATC
* * * * * *
727211 CTTAGTAGAATCCATGTTTATCTCTTTTGAGTCACGAACTTAGACTTTGCAAATATTGGTGGGAA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAA
* * * *
727276 GAAAGTGTTTCTT-CTGAAACTAAAGCATCAATATCGTGCATCCTTATGAGAAGACTAGGTTTAT
258 GAAAGCGTTTCTTGC-GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
* * * * * *
727340 GGTGCCTAATCCTAAAAAGATTGGGGATTAGTACGAGTATTCATGATTGTCTTGTTTAAGAGATA
322 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * *
727405 AACCTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTACGACACCAATGCACCAATGTC
387 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
* ***
727470 ATGTATCTTAATGAAAAAAATGTG
452 ATGTATCCTAATGAAGGGAATGTG
* * * * *
727494 TTTTCGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGAGAATCAATGCTTGCCTTGTTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * ** * *
727559 GGACAAACTTTGATTTTATGGAAAAT-GAGTTAAAG-AAAGATTTCCATGCAAAAGAAAATCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATC
* * * * * *
727622 AATATCATTTATCCTAATGAGGAGAATATGTTGATAGTGCCTAAGCAAAAAATGAATGAAGATAC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* * * * * *
727687 TTAGTAGAATCCATGTTTGTCTCTTTTGACGCAGGAACTTAGACTTTACAAATATTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * *
727752 AAAACGTTTCTT-CTGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAAACTAGGTTTATG
259 AAAGCGTTTCTTGC-GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * * *
727816 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTGTTTGAGAGATAA
323 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** * * * * *
727881 ACTTTGATTCTATCAATAACGATGGAAACTAAAGCTTCTCTTACAACACGAAATCATTAATGTCA
388 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
*
727946 TGTATCCTAATGAAGGGATTGTG
453 TGTATCCTAATGAAGGGAATGTG
* * * * *
727969 TTTTTGGTTTCCAATCTTG-AAATAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTT-AT
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * * *
728032 GTGTCAAACATTGATTTTAAGGAAAATAAGGCCAAGAAAAGATTTCCGTGCCAAAGAAAACCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAAAAACCATC
* *
728097 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAATGAA-AGAAGATC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATA-AAGATC
* *
728161 CTTACTAGAATCCATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTTCAAAAATTGGTGGGAA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAA
* * * * * *
728226 -AAATGCATTTCTTGCAAAACGAAAGCATTAATATCGTGTATCATTATGAGAAGACTAGGTTTAT
258 GAAA-GCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
* * * * *
728290 GGTGCCTAATCTTGAAAATAGTAGGGATTAGTATGAGTATTCATGTTTGTCTTATTAAAGAGACA
322 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
728355 AACTTTGATTCTATCAATAATGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTC
387 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
* * *
728420 ATGTATCCCAATTAATGGAATGTG
452 ATGTATCCTAATGAAGGGAATGTG
* *
728444 TTTTTGGTTCCCAATCTCGAAAA-AATTAGAGACTGTTACAAGAATCAATGCTTGTCTTATTTAA
1 TTTTTGGTTCCCAATCTTGAAAAGAA-TAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAA
* *
728508 AGGTCAAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAAAAATCATCA
65 AGGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAACCATCA
* * * * * * *
728572 ATATCATTTCTCTTATTGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGGATTAAGATCAT
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCCT
** * ** ** * * * * *
728637 TGTTAGAACCCACATTTGTCTTTTTTGAGGCACAAACTTTGGCTTTACAAATATTGGTGGGAAGA
195 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGA
* * * *
728702 AAGCTGTTCCTAT--GAAACCAAAGTACCAATATCGTATATCCTTATGAGAAGACTATGTTTATG
260 AAGC-GTTTCT-TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * * * **
728765 GTGCAC-AATCCTTAAAAGATTAGGGATTTGTATGAGTATTCAGGTTTGTCTTATTTAAGAGATG
323 GTGC-CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
728829 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAACTTCTCTTGCGACCCCAAAAACATCAATGT
387 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACC-AAAGCATCAATGT
*
728894 CTTGTATCCTAATGAAGGGAATGTG
451 CATGTATCCTAATGAAGGGAATGTG
* * * *
728919 TTTTTGGTTCCTAATCTTGAAAAGAAAAGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
**
728984 GGAAAAACTTTGATTTTAAGGAAAAT-GAGGCAAAG-AAAGATTTTCATGCAAAAGAAAACCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATC
** * * *
729047 AATATCATTTATCCTAACAAGGAGAATATGTTTACAGTGCCTAATCACAAAATGAATGAAA-ATA
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAGATC
* * * * * * *
729111 CTTAGTAGAATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTGCAAATATTAGTGGGAA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAA
* * *
729176 TAAAGCGTTTCTT-CTGAAACCAAAGCATCAATAT-GATGCATCCTTATGAGAAGACTAAGTTTA
258 GAAAGCGTTTCTTGC-GAAACCAAAGCATCAATATCG-TGTATCCTTATGAGAAGACTATGTTTA
* * *
729239 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGATTGTCTTGTTTAAGAGAC
321 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * *
729304 AAACTTTGATTCTATCAATAACGATAGAAAGAAAAGCTTCTCTTACGACACCAATGCGTCAATGT
386 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* *
729369 CATGTATCTTAATGAAAGGAATGTG
451 CATGTATCCTAATGAAGGGAATGTG
* * * *
729394 TTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTGTTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * * *
729459 GGACAAACTTTGATTTTATGGAAAAT-GAGGTAAAG-AGAGATTTCCATGCAAAAGAAAATCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATC
* * ** * ***
729522 AATATCATTCATCCTAATGAGGAGAATATGTTGGTAGTGCCTAATCACAAAATGAATGAAGAAAT
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* * * * * **
729587 TTAGTAGAATCTATGTTTGTCTCTTTTGAGGCAGGAACTTAGACTTTACAAATGTTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
** * * * * *
729652 AAAGTATTTCTTCCGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAAACTAGGTTTATTG
259 AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* *
729717 TGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTGTTTAAGAGACAA
324 TGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * ** * *
729781 ACTTTGATTCTATCAATAACGATGGAAACAAAAGTTTCTCCTGCAACATGAAATCATTAATGTCA
388 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* *
729846 TGCATCCTAATGAAGGGATTGTG
453 TGTATCCTAATGAAGGGAATGTG
* * * * *
729869 TTTTTGGTTTCCAATCTTG-AAATAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTT-AT
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* *
729932 GTGTCAAACGTTGATTTTAAGGAAAATATGGGC-AAGAAAAGATTTTCATGCAAAAAAAAAACAT
66 G-GTCAAACTTTGATTTTAAGGAAAATA-GGGCAAAGAAAAGATTTTCATGC-AAAAAAAACCAT
* * * * * * *
729996 CAATATAATTTCT-CTTATAAAGGAGAATGTGTTTATAGTGCCTAATCGCAAAAGGAATTAAGAT
128 CAATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGAT
* * * ** * *
730060 CATTGCTAGAATCCACGTTTGTCTTTTTTGAGGCACGAACTTAGACTTTACAAATATTGGTGGGA
192 CCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGA
* * * * * *
730125 AGAAAGC-TGTTCTTGCAAAACCAAAGTATCAATATCGTATAACCTTATGAGAATACTATGGTTA
257 AGAAAGCGT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * *
730189 TGGCGCATAATCCTTAAATGAATTGGGATTAGTATGAGTATTCA-------C--A-TT-------
321 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * *
730237 ---C--T-A--C---CAATAACGATGGAAAGAAAAGTTTCTCTTGCGACACCAAACCATCAATGT
386 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* * *
730291 CATGGATCCTAATGAAGAGAATGCG
451 CATGTATCCTAATGAAGGGAATGTG
* * * * * * * *
730316 TTTTTGGTTCGCAATCTTGAAAGGAATGGAGACTATTCCGAGAATCATTGCTT-TCGTTTTTTCA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTC-TTATTTAA
* * * * *
730380 AGGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAATATTTCCATGCAAAAGAAAACCATA
65 AGGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATC
* * * * * *
730445 AATATCATTTATCTTAATAAGGAGAATTTGTTTATAATGCCAAATCACAAAATGAATGAAGATCC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* * * * * *
730510 TTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGACTTTTCAAAAATTAGCGAGAAA
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * * * *
730575 AAAACGTTTCTTGCGAAACGAAAGCATCAATATCCTGTATCCTTATTAAAAGACTATGTCTATGC
259 AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * * * * *
730640 AGCCTAATCTTGAAAAAAATGGGGACTAGTATAAGTATTCATTTTTGTCTTTTTTTAGAGACAAA
324 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
730705 CTTTGATTCTACCAATAACGGTGGAAACAAAAGCTTCTCTTACGACACCAATGCATCAATGTCAT
389 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
*
730770 GTATCGTAATGAAGGGAATGTG
454 GTATCCTAATGAAGGGAATGTG
* * * *
730792 TTTTTGGTTCCTAATCTTGAAAAGATTACAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * *
730857 GGTCATACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAACCATCA
66 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAAAAACCATCA
* * * * * * * * *
730922 ATAACATTTATCCTAATAAAGAGAATTTATTTATAATG-CTGAATCCCAAAACGAATGAAGATCC
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATAAAGATCC
* * * * *
730986 TTACTAGAATCCATATTTATCTCATTTGAGACACGAACTTAGACTTTTCAAAAATTGGAGGGAAA
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * *** * **
731051 AAAGCATTTCTTGCGAAACCAAAGCATTAATATCACCTATCCTTATTAGAAGACTACATTTATGG
259 AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * *
731116 TTCCTATTCCTCAAAAGAATGGGGATTAGTATGAGAATTCATGTTTGTCTTTTTTAAGAGAC-AA
324 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* ** *
731180 CCTTGATTCTATCAATAACCATGGAAAGAAAAGCTTCTCTTGCGACACCAAACCATCAATGTCAT
389 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
**
731245 GTATCCTAATGAATAGAATGTG
454 GTATCCTAATGAAGGGAATGTG
* * * * * * * *
731267 TTCTCGGTTCCCAATCTTGAAAGGAATAGAGACTGCTGCGAGAATCAATACTTGCCTTATTTCAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * **
731332 GGACAAACTTTGATTTTAAGCAAAATAACGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
66 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATCA
* *
731397 ATATCATTTATCCTAATAAGGAGAA-GTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
130 ATATCATTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* * *
731461 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTTCAAAAATTGGTGAGAAA
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* **
731526 AAAACGTTTCTTGCGAAACCAAAGCATCAATATTC-TGTATCCTTATTG-GAAGACTATGTCCAT
259 AAAGCGTTTCTTGCGAAACCAAAGCATCAATA-TCGTGTATCCTTA-TGAGAAGACTATGTTTAT
* *
731589 GCG-GCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGAC
322 G-GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *
731653 AAGCTTTGATTCTACCAATAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAACGCATCAATGT
386 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
*
731718 CTTGTATCCTAATGAAGGGAATGTG
451 CATGTATCCTAATGAAGGGAATGTG
* * *
731743 TTTTTGGTTCCTAATCTTGAAAAGATTAGAGACTGCTACGAGAATCAATGCTTGTCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * *
731808 GGTCAAACTTTAATTTTAAGGAAAATAAGGCAAGGAAAAGATTTCCATGCCAAAGAAAACCATCA
66 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAAAAACCATCA
* * * * * *
731873 ATAACGTTTATCCTAATGAAGAGAATATGTTTATAGTGCCTAACCACGAAATGAATAAAGATCCT
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCCT
* * * ** *
731938 TACTAGATTCCATGTTTGTTTCACTTGAGGCACGAACTTAGACTTTTCAAAAATTAATGGGAACA
195 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGA
* * * * *
732003 AAGCGTTTATTGCAAAACCAAAGCATCAATATTGTGTATCCTTATAAGAAGACTTTGTTTATGGT
260 AAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
*** * * * *
732068 AATTAATCCTGAAACA-AATGGGGATTAGTATGAGTATTCGTGCTTATCTTTTTTAAGAGACAAG
325 GCCTAATCCTGAAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-
* * * *
732132 A-TTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTTCAACACCAGAGAATCAATGTCA
388 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
*
732196 TGTATCCTAATAAAGGGAATGTG
453 TGTATCCTAATGAAGGGAATGTG
* * * * * * **
732219 TTTTTGGTTCCCAATCCTGAAAGGAATGGAGACTGTTATGAGAATTAATGTTTACCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * * *
732284 GGACAAACATTGATTTTAAGGAAAATAAGGCAAAGATAACATTTCCATGCAAAGAAAAACCA-CT
66 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA-AAAAACCATC-
* * * * *
732348 AATATCTTTTATCCTAATGAGGGGAATTTGTTTATAGTGCCTAATCACAAAATGAATGAGGATCC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCC
* * *
732413 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTTAAAAAATTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * * * * *
732478 AAAGCCTTTCTTACAAAACCAAAGCATCAATATTGTCTATCCTTATTAGAGGACTACGTTTATGG
259 AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * **
732543 TGTCTAATCTTGAAAAGAATGCGGATTAGTATGAGTATTCATGTTTCTCTTAATTT-AGAGTTAA
324 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT-ATTTAAGAGACAA
* * * * * *
732607 GCTTTGATTCTATCAATAATGGTGG-ACGAAAAAG-TTGT-TGTAGCGACACTAAAGCATCGATG
388 ACTTTGATTCTATCAATAACGGTGGAAAG-AAAAGCTTCTCT-T-GCGACACCAAAGCATCAATG
* * *
732669 TGATGTATCCAAATGAAGGGAATATG
450 TCATGTATCCTAATGAAGGGAATGTG
* * * * * *
732695 TTTTTGGTTCCCAATCTTGTAAAGATTAGAGATTGTTATGAGAATCAATGCTAGTCTTATTTAAG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* **
732760 GGTCAAACCTCAATTTTAAGGAAAATAGG
66 GGTCAAACTTTGATTTTAAGGAAAATAGG
732789 TGTCGTAACG
Statistics
Matches: 6150, Mismatches: 923, Indels: 246
0.84 0.13 0.03
Matches are distributed among these distances:
447 90 0.01
448 262 0.04
449 6 0.00
450 1 0.00
452 1 0.00
453 1 0.00
455 2 0.00
458 2 0.00
465 2 0.00
468 2 0.00
470 1 0.00
471 1 0.00
473 11 0.00
474 736 0.12
475 2485 0.40
476 2487 0.40
477 60 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (475 bp):
TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAACCATCAA
TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCCTT
ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAA
AGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTG
CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATGAAGGGAATGTG
Found at i:726141 original size:159 final size:159
Alignment explanation
Indices: 725485--726151 Score: 388
Period size: 159 Copynumber: 4.2 Consensus size: 159
725475 GTATTCAGGG
* * *
725485 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
1 TTGTCTTATTTAGGTGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * * *
725550 ACACCAAAGTATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGTTCCCAATCTTGAA
66 ACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAACGTGCTTTATGGTTCCCAATCTTGAA
*
725614 AA-GAGTGGAGACTTTTACGAGAATCAATTC
130 AACGAATGGAGA-TTTTACGAGAATCAATTC
** * * ** * ** * * *
725644 TTGTCACATTTAGGTGTCAAACATTGATTTTAAGGAA-AATAGG-GCCAAGAAAAGATTTTCATG
1 TTGTCTTATTTAGGTGACAAACTTTGATTTT-ATCAATAA-CGGTGGAAAGAAAAGCTTCTCTTG
* * ** * * * * * * **
725707 CCAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTTATAGTGCCTAATC-AC
64 CGACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAACGTGCTTTATGGTTCCCAATCTTG
* ** * * *
725770 AAAATGAATAAAGATCCTTACTAGAATCCATGT-
128 AAAACGAATGGAGAT-TTTACGAGAATCAAT-TC
* * ** * * * *
725803 TTGTCTAATTTGAGG-CACGGACTTAGACTTT-TCAAAAACTGGTGGGAAG-AAAGCATT-TCTT
1 TTGTCTTATTT-AGGTGACAAACTTTGATTTTATCAATAAC-GGTGGAAAGAAAAGC-TTCTCTT
* ** * * * *
725864 TCGA-AGCCAAAGCATCAATATTGTGTATCC-ATATGA-GAAGAC-TACATTTGTGGTGT-CTAA
63 GCGACA-CCAAAGCATCAATATCATGTATCCTA-ATGAGGGA-ACGTGC-TTTATGGT-TCCCAA
* * * * * *
725924 TCCTG-AAACGAATGGGGATTAGTATGAGTATTC--TTGT
123 TCTTGAAAACGAATGGAGATT-TTACGAG-AATCAATT-C
* *
725961 TTGTCTTATTTAAGAT-ACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGT
1 TTGTCTTATTT-AGGTGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* *
726025 GACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAACGTGCTTT-TGGTTCCCAATCTTGA
65 GACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAACGTGCTTTATGGTTCCCAATCTTGA
* *
726089 GAA-GAATGGAGACTTTTACAAGAATCAATTC
129 AAACGAATGGAGA-TTTTACGAGAATCAATTC
* *
726120 TTGTCTTATTTAGGTGTCAAACATTGATTTTA
1 TTGTCTTATTTAGGTGACAAACTTTGATTTTA
726152 AGGAAAATAG
Statistics
Matches: 366, Mismatches: 105, Indels: 74
0.67 0.19 0.14
Matches are distributed among these distances:
156 3 0.01
157 7 0.02
158 109 0.30
159 220 0.60
160 23 0.06
161 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (159 bp):
TTGTCTTATTTAGGTGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
ACACCAAAGCATCAATATCATGTATCCTAATGAGGGAACGTGCTTTATGGTTCCCAATCTTGAAA
ACGAATGGAGATTTTACGAGAATCAATTC
Found at i:726600 original size:475 final size:474
Alignment explanation
Indices: 725117--732788 Score: 8684
Period size: 475 Copynumber: 16.2 Consensus size: 474
725107 AGGCATTGCA
* * * *
725117 TTTTTGGTTCCCAATATTGAAAAGAATGGTGACTGTTACAAGAATCAATGCTTGTCTTATTT-AA
1 TTTTTGGTTCCCAATCTTGAAAA-AATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * *
725181 GTGTCAAACATTGATTTTAAGGAATATAGGGCCAAA-AAAAGATTTTCATGCAAAA-AAAATCAT
65 G-GTCAAACTTTGATTTTAAGGAAAATAGGG-CAAAGAAAAGATTTTCATGCAAAAGAAAACCAT
* * * * *
725244 CAATATCATTTATCTTAATGAGGAGGAATATGTTTATCGTTCCTAATCACAAAATGAATTAAGAT
128 CAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * *
725309 CGTTGCTAGAATCCATGTTTGTCTC-TTTAGAGGCACGAACTTAGACTATAT-AAATATTGGTGG
192 CCTTACTAGAATCCATGTTTGTCTCATTT-GAGGCAC-AACTTAGACT-TTTCAAAAATTGGTGG
* * * * * *
725372 GAAGAAAGCTTGTTC-TACGAAACCAAACCGTCAATATTGTGTATCCTTATGAGAAGACTATGTT
254 GAAGAAAGCAT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTT
* * * * * *
725436 TATGGTGCATAATCCTTAAAAGAATAGGGATTAGTATGGGTATTCAGGGTTGTCTTATTTAAGAG
318 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
*
725501 ACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGTATCAAT
383 ACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAAT
725566 GTCATGTATCCTAATGAAGGGAATGTG
448 GTCATGTATCCTAATGAAGGGAATGTG
* * * * ** *
725593 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTTTTACGAGAATCAATTCTTGTCACATTT-AG
1 TTTTTGGTTCCCAATCTTGAAAA-AATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* *
725657 GTGTCAAACATTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAA-AAAACCAT
65 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAGAAAACCAT
*
725721 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATC
128 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
725786 CTTACTAGAATCCATGTTTGTCTAATTTGAGGCACGGACTTAGACTTTTCAAAAACTGGTGGGAA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAA
* * * * ** *
725851 GAAAGCATTTCTTTCGAAGCCAAAGCATCAATATTGTGTATCCATATGAGAAGACTACATTTGTG
257 GAAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATG
* * * *
725916 GTGTCTAATCCTGAAACGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGATACAA
322 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
725981 ACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* *
726046 AGTATCCTAATGAAGGGAACGTG
452 TGTATCCTAATGAAGGGAATGTG
* * * * * * *
726069 CTTTTGGTTCCCAATCTTGAGAAGAATGGAGACTTTTACAAGAATCAATTCTTGTCTTATTT-AG
1 TTTTTGGTTCCCAATCTTGA-AAAAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * *
726133 GTGTCAAACATTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCGTGCCAAAGAAAACCATC
65 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * * *
726198 AATATCATTTATCTTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAATGAAAGAAGATCC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * *
726263 TTACTAGAATCCATATTTGTCTAATTTGAGGCACAAGCTTAGACTTTTCGAAAATTGGT-GGAA-
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACAA-CTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * * * *
726326 AAATACAATTCATGCAAAACGAAAGCATCAATATCGTGTATCCTAATGAGAAGACCAGGTTTATG
258 AAA-GCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATG
*
726391 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAAGAGACAA
322 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
726456 ACTTTGATTCTATCAATAATGGTGGAAAAAAAAGCTTCTCTTGTGAAACCAAAGCATCAACGTCA
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* * ** *
726521 TGTATCCCAATTAATAGAATATG
452 TGTATCCTAATGAAGGGAATGTG
* *
726544 TTTTTGGTTCCCAATCTCGAAAAAATTAGAGACTGTTACAAGAATCAATGCTTGTCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAAA-TAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
** * *
726609 GGTCAAACTTTGATTTTAAAAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCA
65 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
* * * * * *
726674 ATATCATTTCTCTTATTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATTAAGATCAT
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCT
* ** ** * * * *
726739 TGCTAGAATCCACATTTGTCTGTTTTGAGGCATGAACTTTGGCTTTACAAAAATTGGTGGGAAGA
195 TACTAGAATCCATGTTTGTCTCATTTGAGGCA-CAACTTAGACTTTTCAAAAATTGGTGGGAAGA
* * * * * * * *
726804 AAGC-TGTTCCTACGAAGCCAAAGTACCAATATTGTATATCCTTATGAGAAGACTATGTTTATGG
259 AAGCAT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * * * * * * **
726868 TGCAC-AATCCTTAAAAGATTAGGGATTTGTATGAGTACTCAGGTTGGTCCTATTTAACAGATGA
323 TGC-CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
726932 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAACTTCTCTTGCGACCCCAAAACATCAACGTCG
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
726997 TGTATCCTAATGAAGGGAATGTG
452 TGTATCCTAATGAAGGGAATGTG
* * * *
727020 TTTTCGGTT-CCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAA-AATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
**
727084 GGAAAAACTTTGATTTTAAGGAAAAT-GAGGCAAAG-AAAGATTTTCATGCAAAAGAAAACCATC
65 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * * * *
727147 AATATCATTTATCCTAATGAGGAGAATATGTTTACAGTGCTTAATCACAAAATGAATGAAAATAC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * * *
727212 TTAGTAGAATCCATGTTTATCTCTTTTGAGTCACGAACTTAGACTTTGCAAATATTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAG
** * *
727277 AAAGTGTTTCTT-CTGAAACTAAAGCATCAATATCGTGCATCCTTATGAGAAGACTAGGTTTATG
258 AAAGCATTTCTTGC-GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATG
* * * * * *
727341 GTGCCTAATCCTAAAAAGATTGGGGATTAGTACGAGTATTCATGATTGTCTTGTTTAAGAGATAA
322 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
727406 ACCTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTACGACACCAATGCACCAATGTCA
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* ***
727471 TGTATCTTAATGAAAAAAATGTG
452 TGTATCCTAATGAAGGGAATGTG
* * * * *
727494 TTTTCGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGAGAATCAATGCTTGCCTTGTTTAAA
1 TTTTTGGTTCCCAATCTTGAAA-AAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * ** * *
727559 GGACAAACTTTGATTTTATGGAAAAT-GAGTTAAAG-AAAGATTTCCATGCAAAAGAAAATCATC
65 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * * * *
727622 AATATCATTTATCCTAATGAGGAGAATATGTTGATAGTGCCTAAGCAAAAAATGAATGAAGATAC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * * *
727687 TTAGTAGAATCCATGTTTGTCTCTTTTGACGCAGGAACTTAGACTTTACAAATATTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * *
727752 AAAACGTTTCTT-CTGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAAACTAGGTTTATG
258 AAAGCATTTCTTGC-GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATG
* * * * *
727816 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTGTTTGAGAGATAA
322 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** * * * * *
727881 ACTTTGATTCTATCAATAACGATGGAAACTAAAGCTTCTCTTACAACACGAAATCATTAATGTCA
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
*
727946 TGTATCCTAATGAAGGGATTGTG
452 TGTATCCTAATGAAGGGAATGTG
* * * * *
727969 TTTTTGGTTTCCAATCTTGAAATAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTT-ATG
1 TTTTTGGTTCCCAATCTTGAAAAAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAG
* * * * * *
728033 TGTCAAACATTGATTTTAAGGAAAATAAGGCCAAGAAAAGATTTCCGTGCCAAAGAAAACCATCA
66 -GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
* * *
728098 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAATGAAAGAAGATCCT
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCT
*
728163 TACTAGAATCCATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTTCAAAAATTGGTGGGAA-A
195 TACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAGA
* * * *
728227 AATGCATTTCTTGCAAAACGAAAGCATTAATATCGTGTATCATTATGAGAAGACTAGGTTTATGG
259 AA-GCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * *
728292 TGCCTAATCTTGAAAATAGTAGGGATTAGTATGAGTATTCATGTTTGTCTTATTAAAGAGACAAA
323 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
728357 CTTTGATTCTATCAATAATGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCAT
388 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
* * *
728422 GTATCCCAATTAATGGAATGTG
453 GTATCCTAATGAAGGGAATGTG
* *
728444 TTTTTGGTTCCCAATCTCGAAAAAATTAGAGACTGTTACAAGAATCAATGCTTGTCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAAA-TAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* *
728509 GGTCAAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAA-AAAATCATCA
65 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
* * * * * * *
728572 ATATCATTTCTCTTATTGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGGATTAAGATCAT
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCT
** * ** ** * * * *
728637 TGTTAGAACCCACATTTGTCTTTTTTGAGGCACAAACTTTGGCTTTACAAATATTGGTGGGAAGA
195 TACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAGA
* ** * * * *
728702 AAGC-TGTTCCTATGAAACCAAAGTACCAATATCGTATATCCTTATGAGAAGACTATGTTTATGG
259 AAGCAT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * * **
728766 TGCAC-AATCCTTAAAAGATTAGGGATTTGTATGAGTATTCAGGTTTGTCTTATTTAAGAGATGA
323 TGC-CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
728830 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAACTTCTCTTGCGACCCCAAAAACATCAATGTC
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACC-AAAGCATCAATGTC
*
728895 TTGTATCCTAATGAAGGGAATGTG
451 ATGTATCCTAATGAAGGGAATGTG
* * * *
728919 TTTTTGGTTCCTAATCTTGAAAAGAAAAGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAA-AATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
**
728984 GGAAAAACTTTGATTTTAAGGAAAAT-GAGGCAAAG-AAAGATTTTCATGCAAAAGAAAACCATC
65 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
** * * * *
729047 AATATCATTTATCCTAACAAGGAGAATATGTTTACAGTGCCTAATCACAAAATGAATGAAAATAC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * * * * *
729112 TTAGTAGAATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTGCAAATATTAGTGGGAAT
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * *
729177 AAAGCGTTTCTT-CTGAAACCAAAGCATCAATAT-GATGCATCCTTATGAGAAGACTAAGTTTAT
258 AAAGCATTTCTTGC-GAAACCAAAGCATCAATATCG-TGTATCCTTATGAGAAGACTAGGTTTAT
* * *
729240 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGATTGTCTTGTTTAAGAGACA
321 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * *
729305 AACTTTGATTCTATCAATAACGATAGAAAGAAAAGCTTCTCTTACGACACCAATGCGTCAATGTC
386 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
* *
729370 ATGTATCTTAATGAAAGGAATGTG
451 ATGTATCCTAATGAAGGGAATGTG
* * * *
729394 TTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTGTTTAAA
1 TTTTTGGTTCCCAATCTTGAAA-AAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * * *
729459 GGACAAACTTTGATTTTATGGAAAAT-GAGGTAAAG-AGAGATTTCCATGCAAAAGAAAATCATC
65 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * ** ***
729522 AATATCATTCATCCTAATGAGGAGAATATGTTGGTAGTGCCTAATCACAAAATGAATGAAGAAAT
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * * **
729587 TTAGTAGAATCTATGTTTGTCTCTTTTGAGGCAGGAACTTAGACTTTACAAATGTTGGTGGGAAG
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CAACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * *
729652 AAAGTATTTCTTCCGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAAACTAGGTTTATTG
258 AAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* *
729717 TGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTGTTTAAGAGACAA
323 TGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * ** * *
729781 ACTTTGATTCTATCAATAACGATGGAAACAAAAGTTTCTCCTGCAACATGAAATCATTAATGTCA
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* *
729846 TGCATCCTAATGAAGGGATTGTG
452 TGTATCCTAATGAAGGGAATGTG
* * * * *
729869 TTTTTGGTTTCCAATCTTGAAATAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTT-ATG
1 TTTTTGGTTCCCAATCTTGAAAAAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAG
* * *
729933 TGTCAAACGTTGATTTTAAGGAAAATATGGGC-AAGAAAAGATTTTCATGCAAAAAAAAAACATC
66 -GTCAAACTTTGATTTTAAGGAAAATA-GGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * * * * * *
729997 AATATAATTTCT-CTTATAAAGGAGAATGTGTTTATAGTGCCTAATCGCAAAAGGAATTAAGATC
129 AATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * ** * *
730061 ATTGCTAGAATCCACGTTTGTCTTTTTTGAGGCACGAACTTAGACTTTACAAATATTGGTGGGAA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAA
* * * * *
730126 GAAAGC-TGTTCTTGCAAAACCAAAGTATCAATATCGTATAACCTTATGAGAATACTATGG-TTA
257 GAAAGCAT-TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA-GGTTTA
* * * * *
730189 TGGCGCATAATCCTTAAATGAATTGGGATTAGTATGAGTATTCA-------C--A-TT-------
320 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * *
730237 ---C--T-A--C---CAATAACGATGGAAAGAAAAGTTTCTCTTGCGACACCAAACCATCAATGT
385 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* * *
730291 CATGGATCCTAATGAAGAGAATGCG
450 CATGTATCCTAATGAAGGGAATGTG
* * * * * * * *
730316 TTTTTGGTTCGCAATCTTGAAAGGAATGGAGACTATTCCGAGAATCATTGCTT-TCGTTTTTTCA
1 TTTTTGGTTCCCAATCTTGAAA-AAATAGAGACTGTTACGAGAATCAATGCTTGTC-TTATTTAA
* * * * *
730380 AGGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAATATTTCCATGCAAAAGAAAACCATA
64 AGGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * * * *
730445 AATATCATTTATCTTAATAAGGAGAATTTGTTTATAATGCCAAATCACAAAATGAATGAAGATCC
129 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * *
730510 TTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGACTTTTCAAAAATTAGCGAGAAA
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * * * * * * *
730575 AAAACGTTTCTTGCGAAACGAAAGCATCAATATCCTGTATCCTTATTAAAAGACTATGTCTATGC
258 AAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * * * * *
730640 AGCCTAATCTTGAAAAAAATGGGGACTAGTATAAGTATTCATTTTTGTCTTTTTTTAGAGACAAA
323 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
730705 CTTTGATTCTACCAATAACGGTGGAAACAAAAGCTTCTCTTACGACACCAATGCATCAATGTCAT
388 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
*
730770 GTATCGTAATGAAGGGAATGTG
453 GTATCCTAATGAAGGGAATGTG
* * * *
730792 TTTTTGGTTCCTAATCTTGAAAAGATTACAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAG
1 TTTTTGGTTCCCAATCTTGAAAA-AATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * *
730857 GGTCATACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAACCATCA
65 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
* * * * * * * *
730922 ATAACATTTATCCTAATAAAGAGAATTTATTTATAATG-CTGAATCCCAAAACGAATGAAGATCC
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCC
* * * * *
730986 TTACTAGAATCCATATTTATCTCATTTGAGACACGAACTTAGACTTTTCAAAAATTGGAGGGAAA
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAG
* *** * **
731051 AAAGCATTTCTTGCGAAACCAAAGCATTAATATCACCTATCCTTATTAGAAGACTACATTTATGG
258 AAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * *
731116 TTCCTATTCCTCAAAAGAATGGGGATTAGTATGAGAATTCATGTTTGTCTTTTTTAAGAGAC-AA
323 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* ** *
731180 CCTTGATTCTATCAATAACCATGGAAAGAAAAGCTTCTCTTGCGACACCAAACCATCAATGTCAT
388 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
**
731245 GTATCCTAATGAATAGAATGTG
453 GTATCCTAATGAAGGGAATGTG
* * * * * * * *
731267 TTCTCGGTTCCCAATCTTGAAAGGAATAGAGACTGCTGCGAGAATCAATACTTGCCTTATTTCAA
1 TTTTTGGTTCCCAATCTTGAAA-AAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * **
731332 GGACAAACTTTGATTTTAAGCAAAATAACGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
65 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
*
731397 ATATCATTTATCCTAATAAGGAGAA-GTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
130 ATATCATTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * *
731461 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTTCAAAAATTGGTGAGAAA
194 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAG
* * * **
731526 AAAACGTTTCTTGCGAAACCAAAGCATCAATATTC-TGTATCCTTATTG-GAAGACTATGTCCAT
258 AAAGCATTTCTTGCGAAACCAAAGCATCAATA-TCGTGTATCCTTA-TGAGAAGACTAGGTTTAT
* *
731589 GCG-GCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTTTTTAAGAGAC
321 G-GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *
731653 AAGCTTTGATTCTACCAATAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAACGCATCAATGT
385 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
*
731718 CTTGTATCCTAATGAAGGGAATGTG
450 CATGTATCCTAATGAAGGGAATGTG
* * *
731743 TTTTTGGTTCCTAATCTTGAAAAGATTAGAGACTGCTACGAGAATCAATGCTTGTCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAA-AATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * *
731808 GGTCAAACTTTAATTTTAAGGAAAATAAGGCAAGGAAAAGATTTCCATGCCAAAGAAAACCATCA
65 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
* * * * * * *
731873 ATAACGTTTATCCTAATGAAGAGAATATGTTTATAGTGCCTAACCACGAAATGAATAAAGATCCT
130 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCT
* * * ** *
731938 TACTAGATTCCATGTTTGTTTCACTTGAGGCACGAACTTAGACTTTTCAAAAATTAATGGGAACA
195 TACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAAGA
* * * * * **
732003 AAGCGTTTATTGCAAAACCAAAGCATCAATATTGTGTATCCTTATAAGAAGACTTTGTTTATGGT
259 AAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGGT
*** * * * *
732068 AATTAATCCTGAAACA-AATGGGGATTAGTATGAGTATTCGTGCTTATCTTTTTTAAGAGACAAG
324 GCCTAATCCTGAAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-
* * * *
732132 A-TTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTTCAACACCAGAGAATCAATGTCA
387 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
*
732196 TGTATCCTAATAAAGGGAATGTG
452 TGTATCCTAATGAAGGGAATGTG
* * * * * * **
732219 TTTTTGGTTCCCAATCCTGAAAGGAATGGAGACTGTTATGAGAATTAATGTTTACCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAA-AAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * * *
732284 GGACAAACATTGATTTTAAGGAAAATAAGGCAAAGATAACATTTCCATGC-AAAGAAAAACCA-C
65 GGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG-AAAACCATC
* * * *
732347 TAATATCTTTTATCCTAATGAGGGGAATTTGTTTATAGTGCCTAATCACAAAATGAATGAGGATC
129 -AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* *
732412 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTTAAAAAATTGGTGGGAA
193 CTTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AACTTAGACTTTTCAAAAATTGGTGGGAA
* * * * * * * *
732477 GAAAGCCTTTCTTACAAAACCAAAGCATCAATATTGTCTATCCTTATTAGAGGACTACGTTTATG
257 GAAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATG
* * * * **
732542 GTGTCTAATCTTGAAAAGAATGCGGATTAGTATGAGTATTCATGTTTCTCTTAATTT-AGAGTTA
322 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT-ATTTAAGAGACA
* * * * * *
732606 AGCTTTGATTCTATCAATAATGGTGG-ACGAAAAAG-TTGT-TGTAGCGACACTAAAGCATCGAT
386 AACTTTGATTCTATCAATAACGGTGGAAAG-AAAAGCTTCTCT-T-GCGACACCAAAGCATCAAT
* * *
732668 GTGATGTATCCAAATGAAGGGAATATG
448 GTCATGTATCCTAATGAAGGGAATGTG
* * * * * *
732695 TTTTTGGTTCCCAATCTTGTAAAGATTAGAGATTGTTATGAGAATCAATGCTAGTCTTATTTAAG
1 TTTTTGGTTCCCAATCTTG-AAAAAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* **
732760 GGTCAAACCTCAATTTTAAGGAAAATAGG
65 GGTCAAACTTTGATTTTAAGGAAAATAGG
732789 TGTCGTAACG
Statistics
Matches: 6150, Mismatches: 925, Indels: 242
0.84 0.13 0.03
Matches are distributed among these distances:
447 90 0.01
448 262 0.04
449 6 0.00
450 1 0.00
452 1 0.00
453 1 0.00
455 2 0.00
458 2 0.00
465 2 0.00
468 2 0.00
470 1 0.00
471 1 0.00
473 8 0.00
474 731 0.12
475 2502 0.41
476 2482 0.40
477 56 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (474 bp):
TTTTTGGTTCCCAATCTTGAAAAAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAAG
GTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAA
TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTT
ACTAGAATCCATGTTTGTCTCATTTGAGGCACAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA
GCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGGTGC
CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
TGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGGGAATGTG
Found at i:726958 original size:951 final size:950
Alignment explanation
Indices: 725117--732788 Score: 8756
Period size: 951 Copynumber: 8.1 Consensus size: 950
725107 AGGCATTGCA
* * * *
725117 TTTTTGGTTCCCAATATTGAAAAGAATGGTGACTGTTACAAGAATCAATGCTTGTCTTATTT-AA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * * *
725181 GTGTCAAACATTGATTTTAAGGAATATAGGGCCAAAAAAAGATTTTCATG-CAAAAAAAATCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATC
* * * *
725245 AATATCATTTATCTTAATGAGGAGGAATATGTTTATCGTTCCTAATCACAAAATGAATTAAGATC
130 AATATCATTTATCCTAATGAGGA-GAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
725310 GTTGCTAGAATCCATGTTTGTCTC-TTTAGAGGCACGAACTTAGACTATAT-AAATATTGGTGGG
194 CTTACTAGAATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACT-TTTCAAATATTGGTGGG
* * * * * * *
725373 AAGAAAGCTTGTTCTACGAAACCAAACCGTCAATATTGTGTATCCTTATGAGAAGACTATGTTTA
257 AAGAAAGCAT-TTCTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTA
* * * * * *
725438 TGGTGCATAATCCTTAAAAGAATAGGGATTAGTATGGGTATTCAGGGTTGTCTTATTTAAGAGAC
321 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* *
725503 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGTATCAATGT
386 AAACTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* * * * * *
725568 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTTTTACG
451 CATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACG
* * ** * * * *
725633 AGAATCAATTCTTGTCACATTT-AGGTGTCAAACATTGATTTTAAGGAAAATAGGGCCAAGAAAA
516 AGAATCAATGCTTGCCTTATTTAAAG-GACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
725697 GATTTTCATGCCAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
580 GATTTCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
725762 CTAATCACAAAATGAATAAAGATCCTTACTAGAATCCATGTTTGTCTAATTTGAGGCACGGACTT
645 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * *
725827 AGACTTTTCAAAAACTGGTGGGAAGAAAGCAT-TTCTTTCGAAGCCAAAGCATCAATATTGTGTA
710 AGACTTTACAAAAATTGGTGGGAAGAAAGC-TGTTCTTACGAAACCAAAGCATCAATATCGTGTA
* ** * * * *
725891 TCCATATGAGAAGACTACATTTGTGGTGTCTAATCCTGAAACGAATGGGGATTAGTATGAGTATT
774 TCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CTTAAAAGAATGGGGATTAGTATGAGTATT
** * * *
725956 CTTGTTTGTCTTATTTAAGATACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTC
838 CAGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTC
* * *
726021 TTGTGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAACGTG
903 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * * * *
726069 CTTTTGGTTCCCAATCTTGAGAAGAATGGAGACTTTTACAAGAATCAATTCTTGTCTTATTT-AG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* *
726133 GTGTCAAACATTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCGTGCCAAAGAAAACCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATC
* * * * *
726198 AATATCATTTATCTTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAATGAAAGAAGATCC
130 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* *
726263 TTACTAGAATCCATATTTGTCTAATTTGAGGCAC-AAGCTTAGACTTTTCGAAA-ATTGGT-GGA
195 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTTC-AAATATTGGTGGGA
* * * * *
726325 A-AAATACAATTCATGCAAAACGAAAGCATCAATATCGTGTATCCTAATGAGAAGACCAGGTTTA
258 AGAAA-GCATTTC-TGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTA
*
726389 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAAGAGAC
321 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * *
726454 AAACTTTGATTCTATCAATAATGGTGGAAAAAAAAGCTTCTCTTGTGAAACCAAAGCATCAACGT
386 AAACTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* * * * *
726519 CATGTATCCCAATTAATAGAATATGTTTTTGGTTCCCAATCTCGAAA-AAATTAGAGACTGTTAC
451 CATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAA-TAGAGACTGTTAC
* * * **
726583 AAGAATCAATGCTTGTCTTATTTAAAGGTCAAACTTTGATTTTAAAAAAAATAGGGCAAAGAAAA
515 GAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * * *
726648 GATTTTCATGCAAAAAAAAATCATCAATATCATTTCTCTTATTAAGGAGAATGTGTTTATAGTGC
580 GATTTCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * ** ** *
726713 CTAATCACAAAATGAATTAAGATCATTGCTAGAATCCACATTTGTCTGTTTTGAGGCATGAACTT
645 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * * *
726778 TGGCTTTACAAAAATTGGTGGGAAGAAAGCTGTTCCTACGAAGCCAAAGTACCAATATTGTATAT
710 AGACTTTACAAAAATTGGTGGGAAGAAAGCTGTTCTTACGAAACCAAAGCATCAATATCGTGTAT
* * * *
726843 CCTTATGAGAAGACTATGTTTATGGTGCAC-AATCCTTAAAAGATTAGGGATTTGTATGAGTACT
775 CCTTATGAGAAGACTATGTTTATGGTGC-CTAAT-CTTAAAAGAATGGGGATTAGTATGAGTATT
* * * * *
726907 CAGGTTGGTCCTATTTAACAGATGAACTTTGATTCTATCAATAACGGTGGAAAGAAAAACTTCTC
838 CAGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTC
* * * *
726972 TTGCGACCCCAAAACATCAACGTCGTGTATCCTAATGAAGGGAATGTG
903 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * *
727020 TTTTCGGTT-CCAGTCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
** * *
727084 GGAAAAACTTTGATTTTAAGGAAAAT-GAGGCAAAG-AAAGATTTTCATGCAAAAGAAAACCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATC
* * * *
727147 AATATCATTTATCCTAATGAGGAGAATATGTTTACAGTGCTTAATCACAAAATGAATGAAAATAC
130 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * *
727212 TTAGTAGAATCCATGTTTATCTCTTTTGAGTCACGAACTTAGACTTTGCAAATATTGGTGGGAAG
195 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGAAG
** * * * *
727277 AAAGTGTTTCTTCTGAAACTAAAGCATCAATATCGTGCATCCTTATGAGAAGACTAGGTTTATGG
260 AAAGCATTTCTGC-AAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * * *
727342 TGCCTAATCCTAAAAAGATTGGGGATTAGTACGAGTATTCATGATTGTCTTGTTTAAGAGATAAA
324 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
727407 CCTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTACGACACCAATGCACCAATGTCAT
389 CTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
* * * *
727472 GTATCTTAATGAAAAAAATGTGTTTTCGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGAGA
454 GTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGAGA
* * **
727537 ATCAATGCTTGCCTTGTTTAAAGGACAAACTTTGATTTTATGGAAAAT-GAGTTAAAG-AAAGAT
519 ATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGAT
* * * *
727600 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTGATAGTGCCTA
583 TTCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
727665 AGCAAAAAATGAATGAAGAT-ACTTAGTAGAATCCATGTTTGTCTCTTTTGACGCAGGAACTTAG
648 ATCACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
727729 ACTTTACAAATATTGGTGGGAAGAAAAC-GTTTCTT-CTGAAACCAAAGCATCAATATCGTGCAT
712 ACTTTACAAAAATTGGTGGGAAGAAAGCTG-TTCTTAC-GAAACCAAAGCATCAATATCGTGTAT
* *
727792 CCTTATGAGAAAACTAGGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
775 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCTT-AAAAGAATGGGGATTAGTATGAGTATTC
* * * * * **
727857 ATGATTGTCTTGTTTGAGAGATAAACTTTGATTCTATCAATAACGATGGAAACTAAAGCTTCTCT
839 AGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCT
* * * * * *
727922 TACAACACGAAATCATTAATGTCATGTATCCTAATGAAGGGATTGTG
904 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * *
727969 TTTTTGGTTTCCAATCTTG-AAATAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTT-AT
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * *
728032 GTGTCAAACATTGATTTTAAGGAAAATAAGGCCAAGAAAAGATTTCCGTGCCAAAGAAAACCATC
66 G-GTCAAACTTTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATC
* * * *
728097 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAATGAAAGAAGATCC
130 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * *
728162 TTACTAGAATCCATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTTCAAAAATTGGTGGGAA-
195 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGAAG
* * *
728226 AAATGCATTTCTTGCAAAACGAAAGCATTAATATCGTGTATCATTATGAGAAGACTAGGTTTATG
260 AAA-GCATTTC-TGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATG
* * * * *
728291 GTGCCTAATCTTGAAAATAGTAGGGATTAGTATGAGTATTCATGTTTGTCTTATTAAAGAGACAA
323 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
728356 ACTTTGATTCTATCAATAATGGTGGAAAAAAAAGCTTCTCTTGCGAAACCAAAGCATCAATGTCA
388 ACTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* * * *
728421 TGTATCCCAATTAATG-GAATGTGTTTTTGGTTCCCAATCTCGAAA-AAATTAGAGACTGTTACA
453 TGTATCCTAATGAA-GAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAA-TAGAGACTGTTACG
* * *
728484 AGAATCAATGCTTGTCTTATTTAAAGGTCAAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
516 AGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * *
728549 ATTTTCATGC--AAAAAAATCATCAATATCATTTCTCTTATTGAGGAGAATGTGTTTATAGTGCC
581 ATTTCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * ** * ** ** * *
728612 AAATCACAAAATGGATTAAGATCATTGTTAGAACCCACATTTGTCTTTTTTGAGGCACAAACTTT
646 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * * *
728677 GGCTTTACAAATATTGGTGGGAAGAAAGCTGTTCCTATGAAACCAAAGTACCAATATCGTATATC
711 GACTTTACAAAAATTGGTGGGAAGAAAGCTGTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* * *
728742 CTTATGAGAAGACTATGTTTATGGTGCAC-AATCCTTAAAAGATTAGGGATTTGTATGAGTATTC
776 CTTATGAGAAGACTATGTTTATGGTGC-CTAAT-CTTAAAAGAATGGGGATTAGTATGAGTATTC
* *
728806 AGGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAATAACGGTGGAAAGAAAAACTTCTCT
839 AGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCT
* * *
728871 TGCGACCCCAAAAACATCAATGTCTTGTATCCTAATGAAGGGAATGTG
904 TGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * *
728919 TTTTTGGTTCCTAATCTTGAAAAGAAAAGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
** * *
728984 GGAAAAACTTTGATTTTAAGGAAAAT-GAGGCAAAG-AAAGATTTTCATGCAAAAGAAAACCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAG-GGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATC
** * * *
729047 AATATCATTTATCCTAACAAGGAGAATATGTTTACAGTGCCTAATCACAAAATGAATGAAAATAC
130 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * * * *
729112 TTAGTAGAATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTGCAAATATTAGTGGGAAT
195 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGAAG
* * * * *
729177 AAAGCGTTTCTTCTGAAACCAAAGCATCAATAT-GATGCATCCTTATGAGAAGACTAAGTTTATG
260 AAAGCATTTCTGC-AAAACCAAAGCATCAATATCG-TGTATCCTTATGAGAAGACTAGGTTTATG
* * *
729241 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGATTGTCTTGTTTAAGAGACAA
323 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
729306 ACTTTGATTCTATCAATAACGATAGAAAGAAAAGCTTCTCTTACGACACCAATGCGTCAATGTCA
388 ACTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
* * *
729371 TGTATCTTAATGAA-AGGAATGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGA
453 TGTATCCTAATGAAGA-GAATGTGTTTTTGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGA
* * * *
729435 GAATCAATGCTTGCCTTGTTTAAAGGACAAACTTTGATTTTATGGAAAAT-GAGGTAAAG-AGAG
517 GAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAG
* * * * **
729498 ATTTCCATGCAAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAATATGTTGGTAGTGCC
581 ATTTCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * *
729563 TAATCACAAAATGAATGAAGA-AATTTAGTAGAATCTATGTTTGTCTCTTTTGAGGCAGGAACTT
646 TAATCACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
** * * *
729627 AGACTTTACAAATGTTGGTGGGAAGAAAG-TATTTCTTCCGAAACCAAAGCATCAATATCGTGCA
710 AGACTTTACAAAAATTGGTGGGAAGAAAGCT-GTTCTTACGAAACCAAAGCATCAATATCGTGTA
* * * *
729691 TCCTTATGAGAAAACTAGGTTTATTGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATT
774 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCT-TAAAAGAATGGGGATTAGTATGAGTATT
* * * * * * *
729756 CATGATTGTCTTGTTTAAGAGACAAACTTTGATTCTATCAATAACGATGGAAACAAAAGTTTCTC
838 CAGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTC
* * ** * * * *
729821 CTGCAACATGAAATCATTAATGTCATGCATCCTAATGAAGGGATTGTG
903 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * *
729869 TTTTTGGTTTCCAATCTTG-AAATAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTT-AT
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * * *
729932 GTGTCAAACGTTGATTTTAAGGAAAATATGGG-CAAGAAAAGATTTTCATGCAAAAAAAAAACAT
66 G-GTCAAACTTTGATTTTAAGGAAAATA-GGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCAT
* * * * * * * *
729996 CAATATAATTTCT-CTTATAAAGGAGAATGTGTTTATAGTGCCTAATCGCAAAAGGAATTAAGAT
129 CAATATCATTTATCCTAAT-GAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * ** *
730060 CATTGCTAGAATCCACGTTTGTCTTTTTTGAGGCACGAACTTAGACTTTACAAATATTGGTGGGA
193 CCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGA
* * * *
730125 AGAAAGC-TGTTCTTGCAAAACCAAAGTATCAATATCGTATAACCTTATGAGAATACTATGG-TT
258 AGAAAGCAT-TTC-TGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA-GGTTT
* * * * *
730188 ATGGCGCATAATCCTTAAATGAATTGGGATTAGTATGAGTATTCA-------C--A-TT------
320 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* *
730237 ----C--T-A--C---CAATAACGATGGAAAGAAAAGTTTCTCTTGCGACACCAAACCATCAATG
385 CAAACTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATG
* * * * * * *
730290 TCATGGATCCTAATGAAGAGAATGCGTTTTTGGTTCGCAATCTTGAAAGGAATGGAGACTATTCC
450 TCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAATAGAGACTGTTAC
* * * * * *
730355 GAGAATCATTGCTTTCGTTTTTTCAAGGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
515 GAGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * * * *
730420 TATTTCCATGCAAAAGAAAACCATAAATATCATTTATCTTAATAAGGAGAATTTGTTTATAATGC
580 GATTTCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
730485 CAAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTT
645 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * * * *
730550 AGACTTTTCAAAAATTAGCGAGAAAAAAAC-GTTTCTTGCGAAACGAAAGCATCAATATCCTGTA
710 AGACTTTACAAAAATTGGTGGGAAGAAAGCTG-TTCTTACGAAACCAAAGCATCAATATCGTGTA
* * * ** * * *
730614 TCCTTATTAAAAGACTATGTCTATGCAGCCTAATCTTGAAAAAAATGGGGACTAGTATAAGTATT
774 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTT-AAAAGAATGGGGATTAGTATGAGTATT
** * * * * *
730679 CATTTTTGTCTTTTTTTAGAGACAAACTTTGATTCTACCAATAACGGTGGAAACAAAAGCTTCTC
838 CAGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTC
* * *
730744 TTACGACACCAATGCATCAATGTCATGTATCGTAATGAAGGGAATGTG
903 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * *
730792 TTTTTGGTTCCTAATCTTGAAAAGATTACAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * **
730857 GGTCATACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCCAAAGAAAACCATCA
66 GGTCAAACTTTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATCA
* * * * * * * *
730922 ATAACATTTATCCTAATAAAGAGAATTTATTTATAATG-CTGAATCCCAAAACGAATGAAGATCC
131 ATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCC
* * * * * *
730986 TTACTAGAATCCATATTTATCTCATTTGAGACACGAACTTAGACTTTTCAAAAATTGGAGGGAAA
195 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGAAG
* * *** * **
731051 AAAGCATTTCTTGCGAAACCAAAGCATTAATATCACCTATCCTTATTAGAAGACTACATTTATGG
260 AAAGCATTTC-TGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
* * * * *
731116 TTCCTATTCCTCAAAAGAATGGGGATTAGTATGAGAATTCATGTTTGTCTTTTTTAAGAGAC-AA
324 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
731180 CCTTGATTCTATCAATAACCATGGAAAGAAAAGCTTCTCTTGCGACACCAAACCATCAATGTCAT
389 CTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * *
731245 GTATCCTAATGAATAGAATGTGTTCTCGGTTCCCAATCTTGAAAGGAATAGAGACTGCTGCGAGA
454 GTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGAGA
* * * **
731310 ATCAATACTTGCCTTATTTCAAGGACAAACTTTGATTTTAAGCAAAATAACGCAAAGAAAAGATT
519 ATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
731375 TTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAA-GTTGTTTATAGTGCCTA
584 TCCATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTA
* *
731439 ATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACA
648 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * * *
731504 CTTTTCAAAAATTGGTGAGAAAAAAAC-GTTTCTTGCGAAACCAAAGCATCAATATTC-TGTATC
713 CTTTACAAAAATTGGTGGGAAGAAAGCTG-TTCTTACGAAACCAAAGCATCAATA-TCGTGTATC
** * *
731567 CTTATTG-GAAGACTATGTCCATGCG-GCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATT
776 CTTA-TGAGAAGACTATGTTTATG-GTGCCTAAT-CTTAAAAGAATGGGGATTAGTATGAGTATT
* * * * * *
731630 CATGTTTGTCTTTTTTAAGAGACAAGCTTTGATTCTACCAATAACGGTGGAAAGAAAAGCTTTTC
838 CAGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTC
* *
731695 TTGCGACACCAACGCATCAATGTCTTGTATCCTAATGAAGGGAATGTG
903 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * *
731743 TTTTTGGTTCCTAATCTTGAAAAGATTAGAGACTGCTACGAGAATCAATGCTTGTCTTATTTAAA
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* * *
731808 GGTCAAACTTTAATTTTAAGGAAAATAAGG-CAAGGAAAAGATTTCCATGCCAAAGAAAACCATC
66 GGTCAAACTTTGATTTTAAGGAAAATAGGGCCAA-GAAAAGATTTTCATGCCAAAGAAAACCATC
* * * * * *
731872 AATAACGTTTATCCTAATGAAGAGAATATGTTTATAGTGCCTAACCACGAAATGAATAAAGATCC
130 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * * * ** *
731937 TTACTAGATTCCATGTTTGTTTCACTTGAGGCACGAACTTAGACTTTTCAAAAATTAATGGGAAC
195 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGAAG
* * * * **
732002 AAAGCGTTTATTGCAAAACCAAAGCATCAATATTGTGTATCCTTATAAGAAGACTTTGTTTATGG
260 AAAGCATTT-CTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGG
*** * * * *
732067 TAATTAATCCTGAAACA-AATGGGGATTAGTATGAGTATTCGTGCTTATCTTTTTTAAGAGACAA
324 TGCCTAATCCTGAAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
732131 GA-TTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTTCAACACCAGAGAATCAATGTC
388 -ACTTTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
* * * *
732195 ATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATC-CTGAAAGGAATGGAGACTGTTATG
452 ATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTC-GAAAGGAATAGAGACTGTTACG
* * * * * * *
732259 AGAATTAATGTTTACCTTATTTAAAGGACAAACATTGATTTTAAGGAAAATAAGGCAAAGATAAC
516 AGAATCAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
732324 ATTTCCATGCAAAGAAAAACCA-CTAATATCTTTTATCCTAATGAGGGGAATTTGTTTATAGTGC
581 ATTTCCATGCAAAAAAAAACCATC-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
732388 CTAATCACAAAATGAATGAGGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTT
645 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * *
732453 AAACTTTTA-AAAAATTGGTGGGAAGAAAGCCT-TTCTTACAAAACCAAAGCATCAATATTGTCT
710 AGAC-TTTACAAAAATTGGTGGGAAGAAAG-CTGTTCTTACGAAACCAAAGCATCAATATCGTGT
* * * * *
732516 ATCCTTATTAGAGGACTACGTTTATGGTGTCTAATCTTGAAAAGAATGCGGATTAGTATGAGTAT
773 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTT-AAAAGAATGGGGATTAGTATGAGTAT
* * * * * *
732581 TCATGTTTCTCTTAATTT-AGAGTTAAGCTTTGATTCTATCAATAATGGTGG-ACGAAAAAG-TT
837 TCAGGTTTGTCTT-ATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAG-AAAAGCTT
* * * * * *
732643 GT-TGTAGCGACACTAAAGCATCGATGTGATGTATCCAAATGAAGGGAATATG
900 CTCT-T-GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * * *
732695 TTTTTGGTTCCCAATCTTGTAAAGATTAGAGATTGTTATGAGAATCAATGCTAGTCTTATTTAAG
1 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
* **
732760 GGTCAAACCTCAATTTTAAGGAAAATAGG
66 GGTCAAACTTTGATTTTAAGGAAAATAGG
732789 TGTCGTAACG
Statistics
Matches: 5716, Mismatches: 872, Indels: 264
0.83 0.13 0.04
Matches are distributed among these distances:
922 152 0.03
923 330 0.06
924 273 0.05
925 8 0.00
927 1 0.00
928 1 0.00
930 1 0.00
931 1 0.00
934 2 0.00
940 2 0.00
943 2 0.00
945 1 0.00
946 1 0.00
948 15 0.00
949 862 0.15
950 1494 0.26
951 1786 0.31
952 735 0.13
953 49 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (950 bp):
TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAA
GGTCAAACTTTGATTTTAAGGAAAATAGGGCCAAGAAAAGATTTTCATGCCAAAGAAAACCATCA
ATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCT
TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAATATTGGTGGGAAGA
AAGCATTTCTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGGTG
CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAATAACGATGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTCGAAAGGAATAGAGACTGTTACGAGAAT
CAATGCTTGCCTTATTTAAAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CATGCAAAAAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
TACAAAAATTGGTGGGAAGAAAGCTGTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
GAGAAGACTATGTTTATGGTGCCTAATCTTAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTG
TCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
Found at i:735914 original size:52 final size:51
Alignment explanation
Indices: 735849--735997 Score: 217
Period size: 52 Copynumber: 2.9 Consensus size: 51
735839 CGAAATATGA
735849 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* * * *
735901 AAATTTGCTTGCATGTATCAATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
735953 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
735998 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 81 0.95
53 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:736004 original size:13 final size:13
Alignment explanation
Indices: 735986--736010 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
735976 CAAAGATCAG
735986 TGTATCGATACAA
1 TGTATCGATACAA
735999 TGTATCGATACA
1 TGTATCGATACA
736011 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:736088 original size:33 final size:33
Alignment explanation
Indices: 736051--736117 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
736041 AGTAGCTTAA
736051 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
736084 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
736117 A
1 A
736118 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:736091 original size:13 final size:13
Alignment explanation
Indices: 736073--736097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
736063 CAAAAAAATA
736073 TGTATCGATACAT
1 TGTATCGATACAT
736086 TGTATCGATACA
1 TGTATCGATACA
736098 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:737009 original size:49 final size:49
Alignment explanation
Indices: 736884--737170 Score: 370
Period size: 49 Copynumber: 5.9 Consensus size: 49
736874 AAGATGAGAA
* * *
736884 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
*
736934 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
*
736986 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG--
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * * *
737033 --A--TGCCAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAGAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* *
737078 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * *
737127 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
737171 GAAGGGTTGC
Statistics
Matches: 213, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
43 37 0.17
45 1 0.00
47 1 0.00
49 129 0.61
52 40 0.19
53 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (49 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
Found at i:737099 original size:92 final size:92
Alignment explanation
Indices: 736937--737170 Score: 306
Period size: 92 Copynumber: 2.5 Consensus size: 92
736927 TAAAGATGGA
* * *
736937 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGATGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
*
737002 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCTACATTGGACTT
* * * * *
737029 AAAGATGCCAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAGAGATGAAGGTGCCAATGTGC
1 AAAGATGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
737094 TGATTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTACATTGGACTT
* * *
737121 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 -AA-A-G-A--TGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTA
737171 GAAGGGTTGC
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
92 83 0.68
93 2 0.02
94 1 0.01
95 1 0.01
96 1 0.01
98 34 0.28
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
AAAGATGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
TGATTCAAGGCCAGCTACATTGGACTT
Found at i:737150 original size:141 final size:143
Alignment explanation
Indices: 736888--737170 Score: 462
Period size: 141 Copynumber: 2.0 Consensus size: 143
736878 TGAGAAAAAG
* *
736888 GATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGC
1 GATGCCAATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGG-AAAGGTGCCAATATGC
*
736953 TGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
65 TGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
737018 ATATTGGACTTAAA
130 ATATTGGACTTAAA
* * * *
737032 GATGCCAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAGAGAT-G-AAGGTGCCAATGTGCT
1 GATGCCAATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGGTGCCAATATGCT
*
737095 GATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
*
737160 TATTGGGCTTA
131 TATTGGACTTA
737171 GAAGGGTTGC
Statistics
Matches: 130, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
141 88 0.68
143 1 0.01
144 41 0.32
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (143 bp):
GATGCCAATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGGTGCCAATATGCT
GATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
TATTGGACTTAAA
Found at i:737253 original size:32 final size:32
Alignment explanation
Indices: 737163--737425 Score: 410
Period size: 32 Copynumber: 8.2 Consensus size: 32
737153 CCAGCTATAT
737163 TGGGC-TTAGA-AGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
737193 TGGGCTTTAGAGAGGG-TGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
737224 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
737256 TGGGCTTT-GAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
737288 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
737320 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AGAGGGTTGCCACCGACTTGTG
* * *
737353 TGGGCTTCGAAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTT-TAGAGAGGGTTGCCACCGACTTGTG
737386 TGGGCTTTA-AGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
737418 TGGGCTTT
1 TGGGCTTT
737426 GGGAAGGGAG
Statistics
Matches: 218, Mismatches: 7, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
30 5 0.02
31 40 0.18
32 112 0.51
33 60 0.28
34 1 0.00
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:737486 original size:35 final size:32
Alignment explanation
Indices: 737436--737884 Score: 355
Period size: 33 Copynumber: 13.7 Consensus size: 32
737426 GGGAAGGGAG
* *
737436 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAA--GAA
*
737470 AAAGAGTGCCACGGAGTTGGGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TT-AAAAGAA
737505 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAA--GAA
737541 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGC-TT-AAAAGAA
* *
737576 AAA-GTGCCACGAAGTGGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGAA
* *
737609 AAAGGTTGCCACGGAATTGTGGGCTT----TAA
1 AAAGG-TGCCACGGAGTTGTGGGCTTAAAAGAA
* *
737638 AATGGTGCCACGGAGTTGTGGACTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTT-AAAAGAA
* * *
737671 AAA-GTGCCATGGAGTGGTGGGCTTTGAGAAGAA
1 AAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGAA
** *
737704 AAAGGTTGCCACATAATTGTGGGCTTTAAAAGGAA
1 AAAGG-TGCCACGGAGTTGTGGGC-TTAAAA-GAA
*
737739 AAAGAGTGCCACGGAGTTGTGGGCTTAAACG--
1 AAAG-GTGCCACGGAGTTGTGGGCTTAAAAGAA
* *
737770 ---GGTGCCATGGAGTTGTGGGCTTAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGAA
* **
737799 AAAGAGTGCCACGTAGTTGTGGGCTTTGAA-AA
1 AAAG-GTGCCACGGAGTTGTGGGCTTAAAAGAA
* ** *
737831 GAAGGTGCCACGGAGTTGTGGATTTTGAAAGAA
1 AAAGGTGCCACGGAGTTGTGG-GCTTAAAAGAA
* *
737864 AAAGGTGCCACAGAGTCGTGG
1 AAAGGTGCCACGGAGTTGTGG
737885 ACTTTGATGC
Statistics
Matches: 340, Mismatches: 49, Indels: 53
0.77 0.11 0.12
Matches are distributed among these distances:
27 24 0.07
28 19 0.06
29 6 0.02
31 16 0.05
32 25 0.07
33 87 0.26
34 41 0.12
35 82 0.24
36 10 0.03
37 30 0.09
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGGCTTAAAAGAA
Found at i:737749 original size:130 final size:129
Alignment explanation
Indices: 737436--737889 Score: 442
Period size: 130 Copynumber: 3.5 Consensus size: 129
737426 GGGAAGGGAG
* * * *
737436 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGGGGGCTTTAAA
1 AAAG-TGCCACGAAATTGTGGGCTTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT---
737500 AAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGC
61 ---AAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAA-GG-AAAAGAGTGCCACGGAGTTGTGGGC
*
737565 TTTAAAAAGAA
119 TTTGAAAAGAA
* * *
737576 AAAGTGCCACGAAGTGGTGGGCTTTGAAAA-GAAAAAG-GTTGCCACGGAATTGTGGGCTTTAAA
1 AAAGTGCCACGAAATTGTGGGCTTT-AAAAGGAAAAAGAG-TGCCACGGAGTTGTGGGCTTTAAA
* * * * * *
737639 ATGGTGCCACGGAGTTGTGGACTTAAAAAGAAAA-AGTGCCATGGAGTGGTGGGCTTTGAGAAGA
64 AAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGA
737703 A
129 A
737704 AAAGGTTGCCAC-ATAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAA
1 AAA-G-TGCCACGA-AATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
** * *
737767 ACGGGTGCCATGGAGTTGTGGGCTTAAAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTGAAAAG
63 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
737832 --
128 AA
* * * ** * * * *
737832 AAGGTGCCACGGAGTTGTGGATTTTGAAA-GAAAAAG-GTGCCACAGAGTCGTGGACTTT
1 AAAGTGCCACGAAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
737890 GATGCCACTG
Statistics
Matches: 270, Mismatches: 33, Indels: 37
0.79 0.10 0.11
Matches are distributed among these distances:
124 16 0.06
125 9 0.03
126 19 0.07
127 1 0.00
128 32 0.12
129 44 0.16
130 67 0.25
131 5 0.02
132 2 0.01
133 23 0.09
138 1 0.00
139 41 0.15
140 6 0.02
141 4 0.01
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.22
Consensus pattern (129 bp):
AAAGTGCCACGAAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
GGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
Found at i:737802 original size:95 final size:97
Alignment explanation
Indices: 737468--737851 Score: 368
Period size: 95 Copynumber: 4.0 Consensus size: 97
737458 CTTAAAAGGG
* *
737468 AAAAAG-AGTGCCACGGAGTTGG-GGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGAAGTGCCACGGAG-TGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAATTGTGGGCTTT
737531 GAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
65 GAAAA--GAAAAAG-GTGCCACGGAGTTGTGGGC-TT
*
737568 AAAAAGAAAAAGTGCCACGAAGTGGTGGGCTTTGAAAAGAAAAAGGTTGCCACGGAATTGTGGGC
1 AAAAAG---AAGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGG-TGCCACGGAATTGTGGGC
* *
737633 TTT------AAAATGGTGCCACGGAGTTGTGGACTT
62 TTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTT
* * **
737663 AAAAAGAAAAAGTGCCATGGAGTGGTGGGCTTTGAGAAGAAAAAGGTTGCCACATAATTGTGGGC
1 AAAAAG---AAGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGG-TGCCACGGAATTGTGGGC
737728 TTT-AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
62 TTTGAAAA-GAAAAAG-GTGCCACGGAGTTGTGGGCTT
* * * * * * *
737765 -AAACG-GGTGCCATGGAGTTGTGGGC-TT-AAAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTT
1 AAAAAGAAGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAG-GTGCCACGGAATTGTGGGCTTT
737826 GAAAAG---AAGGTGCCACGGAGTTGTGG
65 GAAAAGAAAAAGGTGCCACGGAGTTGTGG
737852 ATTTTGAAAG
Statistics
Matches: 250, Mismatches: 19, Indels: 39
0.81 0.06 0.13
Matches are distributed among these distances:
91 17 0.07
92 3 0.01
95 94 0.38
96 25 0.10
97 23 0.09
100 6 0.02
101 9 0.04
102 20 0.08
103 3 0.01
104 30 0.12
105 20 0.08
ACGTcount: A:0.32, C:0.12, G:0.34, T:0.21
Consensus pattern (97 bp):
AAAAAGAAGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAATTGTGGGCTTTG
AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTT
Found at i:737891 original size:33 final size:33
Alignment explanation
Indices: 737436--737889 Score: 404
Period size: 35 Copynumber: 13.8 Consensus size: 33
737426 GGGAAGGGAG
* *
737436 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAA--GAA
*
737470 AAAGAGTGCCACGGAGTTGGGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTT-AAAAGAA
737505 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAA--GAA
737541 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTT-AAAAGAA
* *
737576 AAA-GTGCCACGAAGTGGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
*
737609 AAAGGTTGCCACGGAATTGTGGGCTTT-----AA
1 AAAGG-TGCCACGGAGTTGTGGGCTTTAAAAGAA
* * *
737638 AATGGTGCCACGGAGTTGTGGACTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* * *
737671 AAA-GTGCCATGGAGTGGTGGGCTTTGAGAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
** *
737704 AAAGGTTGCCACATAATTGTGGGCTTTAAAAGGAA
1 AAAGG-TGCCACGGAGTTGTGGGCTTTAAAA-GAA
*
737739 AAAGAGTGCCACGGAGTTGTGGGC-TTAAACG--
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
737770 ---GGTGCCATGGAGTTGTGGGC-TTAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAA
*
737799 AAAGAGTGCCACGTAGTTGTGGGCTTTGAAAAG--
1 AAAG-GTGCCACGGAGTTGTGGGCTTT-AAAAGAA
** *
737832 -AAGGTGCCACGGAGTTGTGGATTTTGAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* * *
737864 AAAGGTGCCACAGAGTCGTGGACTTT
1 AAAGGTGCCACGGAGTTGTGGGCTTT
737890 GATGCCACTG
Statistics
Matches: 348, Mismatches: 43, Indels: 59
0.77 0.10 0.13
Matches are distributed among these distances:
27 24 0.07
28 19 0.05
29 6 0.02
30 4 0.01
31 19 0.05
32 22 0.06
33 83 0.24
34 41 0.12
35 90 0.26
36 10 0.03
37 30 0.09
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.22
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAA
Found at i:738017 original size:30 final size:31
Alignment explanation
Indices: 737891--738063 Score: 158
Period size: 31 Copynumber: 5.7 Consensus size: 31
737881 GTGGACTTTG
* *
737891 ATGCCACTGAGTCGTGGAC-TT-A-AAAAGG
1 ATGCCACTGAGTCGTGGACTTTGAGAAGAGA
* * * * * *
737919 ATGCCACTGAATTGTGGACTTTTAGGACAAA
1 ATGCCACTGAGTCGTGGACTTTGAGAAGAGA
* * * * *
737950 ATGTCACTGAGTCGTGGGCTTGGAGAAAAGG
1 ATGCCACTGAGTCGTGGACTTTGAGAAGAGA
* *
737981 ATGCCACTAAGTCATGGACTTTGAGATA-A-A
1 ATGCCACTGAGTCGTGGACTTTGAGA-AGAGA
738011 ATGCCACTGAGTCGTGGACTTTGAGAAGAGA
1 ATGCCACTGAGTCGTGGACTTTGAGAAGAGA
*
738042 TTGCCACTGAGTCGTGGACTTT
1 ATGCCACTGAGTCGTGGACTTT
738064 AAAAAGGTAT
Statistics
Matches: 114, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
28 17 0.15
29 3 0.03
30 26 0.23
31 67 0.59
32 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (31 bp):
ATGCCACTGAGTCGTGGACTTTGAGAAGAGA
Found at i:738037 original size:61 final size:62
Alignment explanation
Indices: 737891--738063 Score: 205
Period size: 61 Copynumber: 2.9 Consensus size: 62
737881 GTGGACTTTG
* *
737891 ATGCCACTGAGTCGTGGAC-TT-A-AAAAGGATGCCACTGAA-TTGTGGACTTTTAGGACAAA
1 ATGCCACTGAGTCGTGGACTTTGAGAAAAGGATGCCACT-AAGTCGTGGACTTTGAGGACAAA
* * * * *
737950 ATGTCACTGAGTCGTGGGCTTGGAGAAAAGGATGCCACTAAGTCATGGACTTTGA-GATAAA
1 ATGCCACTGAGTCGTGGACTTTGAGAAAAGGATGCCACTAAGTCGTGGACTTTGAGGACAAA
* *
738011 ATGCCACTGAGTCGTGGACTTTGAGAAGA-GATTGCCACTGAGTCGTGGACTTT
1 ATGCCACTGAGTCGTGGACTTTGAGAAAAGGA-TGCCACTAAGTCGTGGACTTT
738064 AAAAAGGTAT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
59 17 0.18
60 3 0.03
61 52 0.54
62 24 0.25
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (62 bp):
ATGCCACTGAGTCGTGGACTTTGAGAAAAGGATGCCACTAAGTCGTGGACTTTGAGGACAAA
Found at i:739345 original size:14 final size:13
Alignment explanation
Indices: 739301--739350 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
739291 CCTTTGTACT
739301 CTTTTTTTTTTTA
1 CTTTTTTTTTTTA
*
739314 GTTTTTTTTCTTT-
1 CTTTTTTTT-TTTA
*
739327 CTTTTTTTTTTGA
1 CTTTTTTTTTTTA
739340 CTTTTTCTTTT
1 CTTTTT-TTTT
739351 ACATTTGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 2 0.06
13 22 0.71
14 7 0.23
ACGTcount: A:0.04, C:0.10, G:0.04, T:0.82
Consensus pattern (13 bp):
CTTTTTTTTTTTA
Found at i:746212 original size:475 final size:476
Alignment explanation
Indices: 745319--753903 Score: 9889
Period size: 475 Copynumber: 18.2 Consensus size: 476
745309 ACAATAGGGT
* * * * *
745319 AAAGAAAAGATTTCCATGTC-GAAGAAAACCATCAATAACATTTATCCTAATAAGGAGAATTTAT
1 AAAGAAAAGATTTCCATG-CAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * ** * * *
745383 TTATAATGCCGAATCACAAAACAAATAAAGATACTTACTAGAATCCATGTTTGTCTCATTTGAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGG
* *
745448 CACGAACTTAGACTTTTCAAAAATTGGTGGGAA-AAAGGTATTTATTGCGAAACCAAAGCATCAA
130 CACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA-GCATTTTTTGCGAAACCAAAGCATCAA
* * ** * * *
745512 TATCGTCTATCCTTATTAGAAGACTACATTTATGGTGTCGAATCTTGAAAAGAATGGGGATTAGT
194 TATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * * *
745577 ATAAGTATTCATATTTGTCTTATTTAAGGGAC-AACCTTGATTCTATCAATAACGATGGAAAGAA
259 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAA
* * * *
745641 AAGCTTCTCTTGCGACACCAAACCATCAATGTCACGTATCCTAATGAATGGAATGTGTTTTTGGT
324 AAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * * *
745706 TCCCAATCTTGAAAGGAATGGAGATTGTTATGAGAATCGATACTTGCCTTATTTAAAGGAT-AAA
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTT-AAGGATCAAA
745770 CTTTGATTTTAAGGAAAATAAGGC
453 CTTTGATTTTAAGGAAAATAAGGC
* *
745794 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTGTCCTAATGAGGAGAATTTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
*
745859 TATAGTGCCTAATCACAAAATAAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * *
745924 ACGAACTTAGATTTTTCAAAAATTGGTGGGAAGAATGCATTTTTTGCAAAACCAAAGCATCAATA
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCAATA
* * * * *
745989 TCATGTATCCTTATTAGAAGACTATGTTTATGGTGCTTAATCCTGAAAAGAAT-GCGATTTGTAT
196 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* *
746053 GAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTATCAATAATGGTGGAAAGAAAA
261 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAA
* * * * *
746118 GCTGCTCTTCCAACACCAAAGCATCAATGTCATGCATCCTACTGAAGTGAATGTGTTTTTGGTTC
326 GCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC
* * * * *
746183 CTAATCTAGAAAATAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGA-CAAACT
391 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAA-GGATCAAACT
* * *
746247 TTGATTTTGAGGAAAAGAGGGC
455 TTGATTTTAAGGAAAATAAGGC
* *
746269 AAAGAAAAGATTTCCATGC-AAA-AAAATCACCAGA-ATCATTTATCCTAAT--GG-GAATGTGT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCA-ATATCATTTATCCTAATGAGGAGAATGTGT
** * * * * * * *
746328 TTATAGTATCTAATCAAAAAATGAATTAATA-CCATTGCTAGAATTCGTGTTTGTCTCTTATGAG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCC-TTACTAGAATCCATGTTTGTCTCTTTTGAG
* * * * *
746392 GCACGAACTTACACTATGCAAATATTGGTGGGAAGAAAGCTTTTTTTGCGAAACCAAAGCATCAA
129 GCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCAA
* * * * * * * *
746457 TGTCGTATATCCTTATGAGAAGACTATGTTTATAGTTCATAATCATTAGAAGAATGGGGATTAGT
194 TATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * *
746522 ATGGGTATTTAGGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAA
259 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAA
* ** * * *
746587 AAGCTTCTCTTGCGATGCCAAAGCATCAATGTCACGTATTCTAATAAAGGGAATGTGTTTTTGGT
324 AAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
746652 TCCCAATCTTGAAAAAAATGGAAACTTTTACGAGAATCAATTCTTGTCTTATTT-AGG-TGCCAA
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGAT--CAA
* *
746715 ACATTGATTTCAAGGAAAATAAGGC
452 ACTTTGATTTTAAGGAAAATAAGGC
* * * * * *
746740 CAGGAAAAGATTTCCATGCCAAAGAAAACTATCAATGTCATTTATCCTAATGAGGAAAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* *
746805 TATAGTGCCTAATGACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * * *
746870 ATGAACTTAGGCTTTTCAAAAATTGCTGGGAAGAAAG-AGTTTCTCGCAAAACCAAAGCATCAAT
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCA-TTTTTTGCGAAACCAAAGCATCAAT
* * * * * *
746934 ACCATTTATCCCTATGAGAAGACTATGTTTATGGTGCTTAATCCTGAAAAGAATGAGGATTAGTA
195 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * *
746999 TGAATATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAGTAGTGATGGAAAGAAA
260 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAA
* * * * * *
747064 AGATTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATCAAGGGAATTTG-TTTTGGTT
325 AGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* * * * *
747128 CCCAATCTTGAAAAGAATGGACACTATTACGAGAATCAATGCCTATCTTA-CTAATGGGA-CAAA
390 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAA--GGATCAAA
747191 CTTTGATTTTAAGGAAAATAAGGC
453 CTTTGATTTTAAGGAAAATAAGGC
* * ** *
747215 AAAGAAAATATTTTCATGCCGAAGAAAAACATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
*
747280 TATAGTGCCTAATCACAAAATGAATGAAGAT-C-TA-T-G--T---TG---GTCTCATTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * * *
747333 TCGAACCTT-GACTATACAAAAATTGG-GGAGAAGAAAGC-TTTTCTTGTGAAAGCAAAGCATTA
131 ACGAA-CTTAGACTTTTCAAAAATTGGTGG-GAAGAAAGCATTTT-TTGCGAAACCAAAGCATCA
*** * * * **
747395 ATATCAACTATCCTAAT-ATGAAGCCTATGTTTATGGTGCCTAACCCTTTAAAGAATGGGGATTA
193 ATATCGTGTATCCTTATGA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * * * * *
747459 TTATGAGTATTCATGTTTATCTTTTTTAAAAGACAAACTTTGAATCTATGAATAACGAT-GTAAG
257 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAG
* *
747523 AAAAGTTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
322 AAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
* * *
747588 GTTCCCAATCTTGAAAAGAATGGAGTCTGTTACGAGAATTAATGCTTGTCTTATTTAAGAATCAA
387 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGATCAA
747653 ACTTTGATTTTAAGGAAAATAAGGC
452 ACTTTGATTTTAAGGAAAATAAGGC
** * *
747678 AAAGAAAAGATTTCCACACCAAAGAAAACTATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
747743 TATAGTGCCTAATCACAAAATGAATGAAAATCCTTTCTAGAATCCATATTT-TCTCATTTGTGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * *
747807 ACGAACTTAGAC-TTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCAAAAACAAAGCACCAATA
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCAATA
* * * ** *
747871 TCGTATATCTTTATGAGAAGACTAGGTTTATGGTGCCTAATATTGAAAAGAATGGGGATTTGTAT
196 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* *
747936 GAGTATTCATGTTTGTCTTATTTAAGAG---AA---TG----TGT---TAATGGTGGAAAAAAAA
261 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAA
* * * *
747988 GCTTCTCTTGCGAA-ACCAAAGCATTAATGTCATGTATCCCAATTAAGGGAATGTGTTTTCGGTT
326 GCTTCTCTTGC-AACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* * * * **
748052 CCCAATCTTAAAAAGAATGGAGACTGTTACGAGCATCAATGCTAGCCTTATTTAAGGGGCAAACT
390 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGATCAAACT
* *
748117 TTGATTTTAAGGAAAAGAGGGC
455 TTGATTTTAAGGAAAATAAGGC
* * *
748139 AAAGAAAAGATTTCCATGCAAAAAAAAAAAAATCATCAATATCATTTATCCTAATAAGGCA-AAT
1 AAAGAAAAGATTTCCATGC----AAAAGAAAACCATCAATATCATTTATCCTAATGAGG-AGAAT
* ** * * * *** *
748203 GGGTTTACGGTGCCTAATCACAAAATGAATTAAGATCATTGCTAGAATCCGCATTTATCTCTTTT
61 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTT
* * * * * *
748268 GAGGCATGAACCTAGACTTTACAAATATTGGTGGGAAGAAAG-GTTTTCTTGTGAAACCAAAGCA
126 GAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTT-TTGCGAAACCAAAGCA
* * * * * * * **
748332 TTAGTATCATATATCTTTATGAGAAGACTATGTTTATGGTGCATAATCCTTAAAA-AACAGGGAT
190 TCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
748396 TAGTATTAGTATTCATATTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAA
255 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAA
* * *
748461 AGAAAAGCTTCTCTTGCAACACTAAAGCATCAATGTCAGGTATCTTAATGAA-GGAATGTGTTTT
320 AGAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* *
748525 TGGTTCCCAATCTTGAAAAGAATGGTGACTGTTACAAGAATCAATGCTTGTCTTATTTAAGTG-T
385 TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAG-GAT
*
748589 CAAACATTGATTTTAAGGAAAATAAGGC
449 CAAACTTTGATTTTAAGGAAAATAAGGC
* * * * * * * *
748617 CAAGAAACGATTTTCATGCAAAAAAAAATCATCAATATCATTTATCTTAATGAGGAGGAATATCT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGA-GAATGTGT
* * * * * *
748682 TTATCA-TTCCTAATCACAAAATGAATTAAGATCGTTGCTAGAATCCACGTTTGTCTCTTTAGAG
65 TTAT-AGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAG
* * * * * *
748746 GCACGAACTTAAACTATAT-AAATATTGGTAGGAAGAAAGC-TTTTCCTGCGAAACCAAAGCATT
129 GCACGAACTTAGACT-TTTCAAAAATTGGTGGGAAGAAAGCATTTT-TTGCGAAACCAAAGCATC
* * **
748809 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCATAATCCTTAAAAGAATAAGGATTA
192 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * * *
748874 GTGTGGGTATTCAGGTTTGTCATATATAAGAGACAAACTTTGATTCTATCAACAACGGTGGAAAG
257 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAG
**
748939 AAAAGCTTCTCTTGCAACACCAAATTATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
322 AAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
* * * * * *
749004 GTTCCCAACCTTGAAAAGAATGGAGACTTTTACGCGAATCAATTCTTGTCTTGTTT-AGGTGTCA
387 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGG-ATCA
* * *
749068 AACATTGATTTCAAGGAAAATAGGGC
451 AACTTTGATTTTAAGGAAAATAAGGC
* * * * *
749094 CAAGAAAAGATTTTCGTGCCAAA-AAAGCCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * **
749158 TATTGTGCCTAATCACAAAATGAATAAAGATCCTTACTAGAATCCGTGTTTATCTAATTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * *
749223 ATGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTCTTCCGAAGCCAAAGCATCAATA
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCAATA
* * * * * * *
749288 TCATGCATCCATATGAGAATACTATGTTTGTGGTGCTTAAT-CTCGAAACGAATGGGGATTAGTA
196 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTA
* * *
749352 TGAGTATTCTTGTTTATCTTATTTAAGATACAAACTTTGATTC-ATCAATAATGGTGGAAAGAAA
260 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAA
* * * *
749416 AGCTTCTCTTGCGACACCAATGCATCAATGTCATGTATTCTAATGAAGGGAATGTGCTTTTGGTT
325 AGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* * * *
749481 CCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTAATTCTTGTCTTATTT-AGGTGTCAAAC
390 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGG-ATCAAAC
* *
749545 ATTGATTTTAAGGAAAATAGGGC
454 TTTGATTTTAAGGAAAATAAGGC
* * *
749568 CAAGAAAAGATTTCCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * **
749633 TATTGTGCCTAATCACAAAATGAATAAAGACCCTTACTAGAATCCATGTTTGTCTAATTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * * *
749698 ATGAACTTAGACTTTTCAAAATTTGGTGGGAAGAAAGCATTTCTTCCTAAGCCAAAGCATCAATA
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCAATA
* * * * * *
749763 TCGTGCATCCATATGAGAATACTACGTTTGTGGTGCCTAAT-CTCGAAACA-AATAGGGATTAGT
196 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAA-AGAATGGGGATTAGT
* * *
749826 ATGAGTATTCTTGTTTATCTTATTTAAGATACAAACTTTGATTC-ATCAATAATGGTGGAAAGAA
259 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAA
* * * * *
749890 AAGCTTCTCTTGCGACACCAATGCATCAATGTCATGTATGCTAATGAAGGGAATATGCTTTTGGT
324 AAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
749955 TCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATTCTTGTCTTATTT-GGGTGTCAAA
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGG-ATCAAA
* *
750019 CATTGATTTTAAGGAAAATAGGGC
453 CTTTGATTTTAAGGAAAATAAGGC
* * * *
750043 CAAGAAAAGATTTCCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
**
750108 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAATTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * **
750173 ACAAACTTAGACTTTTAAAAAATTGGTGGGAA-AAATTCATTTTTTGCAAAACCAAAGCATTGAT
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA-GCATTTTTTGCGAAACCAAAGCATCAAT
* * * * * * **
750237 ATCATTTATCCTTATGAGAAGACTAGGTTTATGGTGCCCAATCTTGAAAAAAATAAGGATTAGTA
195 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * *
750302 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAGCATTGATTCTATTATTAATGGTGGAAAAAAA
260 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAA
* * *
750367 AGCTTCACTTGCTAA-ACCAAAGCATCAATGTCATGTATCCCAATTAAGGGAATGTGTTTTTGGT
325 AGCTTCTCTTGC-AACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * * * *
750431 TCCCACTCTCGAAAAGATTAGAGACTATTACGAGAATCAATGCTTGTTTTATTTAAGGGTCAAAC
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGATCAAAC
*
750496 TTTGATTTTAAGGAAAATAGGGC
454 TTTGATTTTAAGGAAAATAAGGC
* * * * * * * * * *
750519 CAAGAAACGATTTTCACGCAAAAAAAAAATCATTAATATCATTTCTCTTATTGAGGAGAATGTGT
1 AAAGAAAAGATTTCCATGC-AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * * * *
750584 TTATAGTGCCTAATCACAAAATGAATAAAAATCATTGCTGGAATCCACGTTTGTCTTTTTTGAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGG
* * * * * * * *
750649 TACGAACTTTGGCTTTACAAATATTGGCGGGAAGAAAG--TTTTTCCTGCGAAACCAAAGTACCA
130 CACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTT--TGCGAAACCAAAGCATCA
* * * * **
750712 ATATCGTATATCCTTATGAGAAGACTATGTTTATGGTGCATAATCCTTAAAAGATTGAAGATTAG
193 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* **
750777 TATGAGTATTCAGGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAATAATGGTGGAAAGA
258 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGA
* * * * *
750842 AAAGCTTCTCTTGCCACCCCAAAACATCAAAGTCGTGTATCCTAATGAAGGGAATGTGTTTTT-G
323 AAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
* * *
750906 TATCCCAATCTTGAAAAGAATGGAGACTATTGCGAGAATCAATGCTTGCCTTATTTGAAGGA-CA
388 T-TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTT-AAGGATCA
* *
750970 AACATTGATTTTAAGGAAAATGAGGC
451 AACTTTGATTTTAAGGAAAATAAGGC
* * * *
750996 AAAG-AAAGATTTCCATGCAAAACAAAACCATCAATATCATTTTTCCTATTGAGGAGAATATGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * **
751060 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTCTATGACTTTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * * *
751125 ATGAACTTAGACTTTACAAATATTAGTGGGAAGAAAGCATTTCTTT-CGAAACCAACGCATCAGT
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTT-TTTGCGAAACCAAAGCATCAAT
* *
751189 ATCGTGTATCCTTATTAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
195 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * * * * *
751254 TGAGTATTCATGATTGTCTTGTTTAAGAGACTAACTTGGATTCTATCAAAAACGATGGAAACAAA
260 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAA
* * * *
751319 AGCTTCTCCTGCAACACCAAATCATCAATGTCATGTATCCTAATGTAGGGATTGTGTTTTTGGTT
325 AGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* * ** * *
751384 -CCAATCTTG-AAAGAATAGAGACTGTTACAAGAATCTGTTCTTGTCTTATTTATGTG-TCAAAC
390 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAG-GATCAAAC
* *
751446 ATTGATTTTAAGGAAAATAGGGC
454 TTTGATTTTAAGGAAAATAAGGC
* * * * * * * *
751469 CAAGAAAAGATTTTCACGCAAAAAAAAAAAATCATCAATATCATTTCTCTTATTGAGGAGAATGT
1 AAAGAAAAGATTTCCATGC---AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * * *
751534 GTTTATAGTGCCTAATCGCAAAAAGAATTAAGATCATTGCTAGAATCCATGTTTGTCTTTTTTGA
63 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGA
* ** * * *
751599 GGTACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTCATCCGAAGCCAAAGCAACA
128 GGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCA
* * * * * * *
751664 ATATCGTGTATCCATATGAAAAGACTACGTTTCTGGTGCCTAATCTTGAAATGAATAGGGATTAG
193 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * *
751729 TGTGAGTATTCTTGTTTATCTTATTTAAGATACAAACTTTGATTCTATCAATAATGGTGGAAAGA
258 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGA
* *
751794 AAAGCTTCTCTTGCAACACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGG
323 AAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
* * * * * *
751859 TTCCTAACCTTGAAAAGAATGGAGACTTTTACGAGAATCAATTCTTGTCTTATTT-TGGTGTCAA
388 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGG-ATCAA
* *
751923 ACATTGATTTTAAGGAAAATAGGGC
452 ACTTTGATTTTAAGGAAAATAAGGC
* * * *
751948 CAAGAAAAGATTT-CAGTTCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATTTGT
1 AAAGAAAAGATTTCCA-TGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGT
*
752012 TTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTGTCTCTTTTGAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGG
* * * * *
752077 CACGAACTTAGACTTTACAAATATTGGTTGGAAGAAAGCGTTTCTTT-CAAAACCAAAGCATCAA
130 CACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTT-TTTGCGAAACCAAAGCATCAA
* * *
752141 TATTGTGTATCCTTATGAGAAGACTAGGTTTATGGTGGCC-AATCCTGAGAAGAATGGGGATTAG
194 TATCGTGTATCCTTATGAGAAGACTATGTTTATGGT-GCCTAATCCTGAAAAGAATGGGGATTAG
* * *
752205 TATGAGCATTCATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAATAATGGTGGAAAAA
258 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGA
* * * *
752270 AAAGCTTCACTTGCGAA-ACCAAAGCATCAGTGTCGTGTATCCTAATTAAGGGAATGTGTTTTTG
323 AAAGCTTCTCTTGC-AACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
* * * *
752334 GTTCCCAATCTCGAAAAGATTAGAGACTATTACGAGAATCAATG-TTGTCTTATTTAAAGG-TCA
387 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTT-AAGGATCA
752397 AACTTTGATTTTAAGGAAAATAAGGC
451 AACTTTGATTTTAAGGAAAATAAGGC
* * * * * * * * * *
752423 AAAGAAAAGTTTTTCACGCAAAAAAAAATCATCAATACCATTTCTCTTATTGGGGAGAATGTGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * ** * * * *
752488 TATAGTGCCTGATCACAAAACGAATTAAGATTATTTCTAGAATCCACGTTTGTCTTTTTTAAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * * * * *
752553 ACGAACTTTGGCTTTAT-AAAAATTGGTGGGAAGAAAG--TTGTTCCTACGAAACCAAAGTACCA
131 ACGAACTTAGACTTT-TCAAAAATTGGTGGGAAGAAAGCATT-TT-TTGCGAAACCAAAGCATCA
* * * *
752615 ATATCGTATATCCTTATGAGAAGACTATGTTTATGGTGCATAATCCTTAAAAGATTGGGGATTAG
193 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* ** * *
752680 TATGAGTATTCAGGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATGAATAATGCTGGAAAGA
258 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGA
* * * * *
752745 AAAGCTTTTCTTGCGACCCCAAAACATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
323 AAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
*
752810 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGA-CAA
388 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTT-AAGGATCAA
*
752874 ACTTTGATTTTAAGGAAAATGAGGC
452 ACTTTGATTTTAAGGAAAATAAGGC
* * * *
752899 AAAG-AAAGATTTCAATTCAAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATATGTT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * *
752963 TATAGTGCCTAATCACAAAATTAGTAAAGATCCTTACTAGAATCCATGTCTGTCTCTTTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* ** * * *
753028 ATGAACTTAGACTTTAGAAATATTGGTGGGAAGAAAGCATTTCTTT-AGAAAGCAAAGCATCAAT
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTT-TTTGCGAAACCAAAGCATCAAT
* *
753092 ATCGTGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAA-CCTTGAAAAGAATGGGGATTTGT
195 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGT
* * * * * * *
753156 ATAAGAATTCTTGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTACCAATGACGGTGGAAAGAA
259 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAA
* *
753221 AA------CATG------C---G--TCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGT
324 AAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * *
753269 CCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCAGTGCTTGCCTTGTTTAAAGGA-CAAA
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTT-AAGGATCAAA
* *
753333 CTTTGATTTTATGGAAAATGAGGC
453 CTTTGATTTTAAGGAAAATAAGGC
* * * * *
753357 AAAG-AAATATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATATT
1 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * *
753421 GATAGTGCCTAATCACAAAATGAATGAAGATACTTAGTAGAATCCATGTTTGTCTCTTTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
* * *
753486 ACGAGCTTAGACTTTACAAATATTGGTGGGAAGAAAGCATTTCTTT-CGAAACCAAAGCATCAAT
131 ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTT-TTTGCGAAACCAAAGCATCAAT
* * *
753550 ATCGTGCATCCTTATGAGAAGACTAGGTTTATGGTGCCTAATCCTGAAATGAATGGGGATTAGTA
195 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * * *
753615 TGAGTATTCATGATTGTCTTGTTTAAGAGACAAACTTTGATTCTATCAATAACGATAGAAACAAA
260 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAA
* * * * *
753680 AGCTTCTCCTACAACACCAAATCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTTTAGGTT
325 AGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* * * * * * *
753745 TCTAATCTTG-AAAGAATAGAGACTGTTACAAGAATCAATTCTTGTCTTATTTATGTG-CCAAAC
390 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAG-GATCAAAC
* * *
753808 GTTGA-TTTAAGGAAAACAGGGC
454 TTTGATTTTAAGGAAAATAAGGC
* ** * * * * ** *
753830 CAAGAAAAGATTTTGATGCAAAAAAAAAAATCGTCAATATCATTTCTTTTATTGAGGAGAATGTG
1 AAAGAAAAGATTTCCATGC--AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTG
753895 TTTATAGTG
64 TTTATAGTG
753904 TCTACTTGTT
Statistics
Matches: 6956, Mismatches: 996, Indels: 315
0.84 0.12 0.04
Matches are distributed among these distances:
458 410 0.06
459 2 0.00
460 5 0.00
461 156 0.02
462 67 0.01
463 322 0.05
464 9 0.00
465 82 0.01
466 67 0.01
467 84 0.01
469 11 0.00
470 164 0.02
471 208 0.03
472 10 0.00
473 245 0.04
474 377 0.05
475 2617 0.38
476 1040 0.15
477 818 0.12
478 129 0.02
479 133 0.02
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (476 bp):
AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
TATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGC
ACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCATTTTTTGCGAAACCAAAGCATCAATA
TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAA
GCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC
CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGATCAAACTT
TGATTTTAAGGAAAATAAGGC
Found at i:749388 original size:158 final size:159
Alignment explanation
Indices: 749226--749936 Score: 401
Period size: 158 Copynumber: 4.5 Consensus size: 159
749216 TTGAGGCATG
749226 AACTTAGACTTTTCAAAAATTGGTGGGAAG-AAAGCATTTCTTCCGAAGCCAAAGCATCAATATC
1 AACTTAGA-TTTTCAAAAATTGGTGGGAAGAAAAGCATTTCTTCCGAAGCCAAAGCATCAATATC
* * *
749290 ATGCATCC-ATATGAGAATACTATGTTTGTGGTGCTTAATCTCGAAACGAATGGGGA-TTAGTAT
65 ATGCATCCTA-ATGAGAATACTATGTTTGTGGTGCCTAATCTCGAAACGAATAGAGACTTAGTAT
749353 GAGTATTCTTGTTTATCTTATTTAAGATACA
129 GAGTATTCTTGTTTATCTTATTTAAGATACA
* * * * * * *
749384 AACTTTGATTCATCAATAA-TGGTGGAAAGAAAAGC-TTCTCTTGCGACA-CCAATGCATCAATG
1 AACTTAGATT-TTCAAAAATTGGTGGGAAGAAAAGCATT-TCTTCCGA-AGCCAAAGCATCAATA
* * * * * * * * *
749446 TCATGTATTCTAATGAAGGGA-A-TGTGCTTT-TGGTTCCCAATCTTGAAAAGAATGGAGACTT-
63 TCATGCATCCTAATG-A-GAATACTATG-TTTGTGGTGCCTAATCTCGAAACGAATAGAGACTTA
* * * * * * * *
749507 TTACGAGAATTAATT-CTTGTCTTATTT-AGGTGTCA
125 GTATGAGTATT-CTTGTTTATCTTATTTAAGAT-ACA
* * ** * * * *
749542 AACATT-GATTTTAAGGAAAATAGG-GCCAAGAAAAG-ATTTCCGTGCCAAAG-AAAACCATCAA
1 AAC-TTAGATTTTCA--AAAATTGGTGGGAAGAAAAGCATTT-C-TTCCGAAGCCAAAGCATCAA
** * * * * * * * * * *
749603 TATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATAAAGACCCTT
61 TATCATGCATCCTAATGAGAATACTATGTTTGTGGTGCCTAATCTCGAAACGAATAGAGA--CTT
* * * * * * ** **
749668 ACTA-GA--ATCCATGTTTGTCTAATTTGAGGCATG
124 AGTATGAGTATTCTTGTTTATCTTATTTAAGATACA
* *
749701 AACTTAGACTTTTCAAAATTTGGTGGGAAG-AAAGCATTTCTTCCTAAGCCAAAGCATCAATATC
1 AACTTAGA-TTTTCAAAAATTGGTGGGAAGAAAAGCATTTCTTCCGAAGCCAAAGCATCAATATC
* * * *
749765 GTGCATCC-ATATGAGAATACTACGTTTGTGGTGCCTAATCTCGAAACAAATAGGGA-TTAGTAT
65 ATGCATCCTA-ATGAGAATACTATGTTTGTGGTGCCTAATCTCGAAACGAATAGAGACTTAGTAT
749828 GAGTATTCTTGTTTATCTTATTTAAGATACA
129 GAGTATTCTTGTTTATCTTATTTAAGATACA
* * * * * * *
749859 AACTTTGATTCATCAATAA-TGGTGGAAAGAAAAGC-TTCTCTTGCGACA-CCAATGCATCAATG
1 AACTTAGATT-TTCAAAAATTGGTGGGAAGAAAAGCATT-TCTTCCGA-AGCCAAAGCATCAATA
* *
749921 TCATGTATGCTAATGA
63 TCATGCATCCTAATGA
749937 AGGGAATATG
Statistics
Matches: 406, Mismatches: 106, Indels: 82
0.68 0.18 0.14
Matches are distributed among these distances:
155 5 0.01
156 2 0.00
157 41 0.10
158 235 0.58
159 101 0.25
160 15 0.04
161 5 0.01
162 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (159 bp):
AACTTAGATTTTCAAAAATTGGTGGGAAGAAAAGCATTTCTTCCGAAGCCAAAGCATCAATATCA
TGCATCCTAATGAGAATACTATGTTTGTGGTGCCTAATCTCGAAACGAATAGAGACTTAGTATGA
GTATTCTTGTTTATCTTATTTAAGATACA
Found at i:755224 original size:124 final size:124
Alignment explanation
Indices: 755004--755265 Score: 452
Period size: 124 Copynumber: 2.1 Consensus size: 124
754994 AAATTGGTGG
* *
755004 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGTCTAAGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTAAGTTT
*
755069 CTGGTGCCTAATCTTGAAAAGAATGCGGATTAGTGTAAGTATTCATGTTTGTCTTATTT
66 ATGGTGCCTAATCTTGAAAAGAATGCGGATTAGTGTAAGTATTCATGTTTGTCTTATTT
755128 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTAAGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTAAGTTT
* *
755193 ATTGTGCCTAATCTTGAAAAGAATGCGGATTAGTGTGAGTATTCATGTTTGTCTTATTT
66 ATGGTGCCTAATCTTGAAAAGAATGCGGATTAGTGTAAGTATTCATGTTTGTCTTATTT
*
755252 AAGAGACAAGCCTT
1 GA-AGA-AAGCCTT
755266 CATTCTATCA
Statistics
Matches: 130, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
124 120 0.92
125 3 0.02
126 7 0.05
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (124 bp):
GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTAAGTTT
ATGGTGCCTAATCTTGAAAAGAATGCGGATTAGTGTAAGTATTCATGTTTGTCTTATTT
Found at i:755496 original size:153 final size:154
Alignment explanation
Indices: 755311--755621 Score: 380
Period size: 153 Copynumber: 2.0 Consensus size: 154
755301 TTACGACACC
*
755311 AAAGCATCAATGTCATGTATACTAATGAAGGGAATGTATTCTTGATTAC-CAATCATGAAAAAAA
1 AAAGCATCAATGTCATGTATACTAATGAAGGGAATGCATTCTTGATT-CGCAATCATGAAAAAAA
* * * *
755375 TAGAGATTGTTA-GAAGAAT-AGATGATTGCCTTATTTAATATAT-GAACTTTGATTTTAAGGAA
65 TAGAGACTATTACG-AGAATCA-ATGATTGCCTTATTTAA-AGATCAAACTTTGATTTTAAGGAA
755437 AAAAG-GCAAAGAAAAGATTTCCATGCA
127 AAAAGCGCAAAGAAAAGATTTCCATGCA
* * * * *
755464 AAAGCATCAATGTTATGTATCCTAATGAAGGGAATGCATTTTTGGTTCGCAATCATGAAAAGAAT
1 AAAGCATCAATGTCATGTATACTAATGAAGGGAATGCATTCTTGATTCGCAATCATGAAAAAAAT
* * * * **
755529 GGAGACTATTACGAGAATCAATGCTTGTCTTATTTAAAGGTCAAACTTTGATTTTAAGGAAAATC
66 AGAGACTATTACGAGAATCAATGATTGCCTTATTTAAAGATCAAACTTTGATTTTAAGGAAAAAA
* * *
755594 GCGTAATGAAAAGATTTCCATGCC
131 GCGCAAAGAAAAGATTTCCATGCA
755618 AAAG
1 AAAG
755622 AAAACGATCA
Statistics
Matches: 134, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
152 3 0.02
153 106 0.79
154 25 0.19
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (154 bp):
AAAGCATCAATGTCATGTATACTAATGAAGGGAATGCATTCTTGATTCGCAATCATGAAAAAAAT
AGAGACTATTACGAGAATCAATGATTGCCTTATTTAAAGATCAAACTTTGATTTTAAGGAAAAAA
GCGCAAAGAAAAGATTTCCATGCA
Found at i:756534 original size:476 final size:474
Alignment explanation
Indices: 755464--756921 Score: 1890
Period size: 476 Copynumber: 3.1 Consensus size: 474
755454 TTTCCATGCA
* ** * *
755464 AAAGCATCAATGTTATGTATCCTAATGAAGGGAATGCATTTTTGGTTCGCAATCATGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * *
755529 GGAGACTA-TTACGAGAATCAATGCTTGTCTTATTTAAAGGTCAAACTTTGATTTTAAGGAAAAT
66 CGAGAC-AGTTACGAGAATCAATGCTTATCTTATTTAGAGGTCAAACTTTGATTTTAAGGAAAAT
* * * * * *
755593 CGCGTAATGAAAAGATTTCCATGCCAAAGAAAACGATCAATATCATCTATCTTAAGGAGGAGAAT
130 AG-GCAAAGAAAAGATTTCCATGCCAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGAAT
* * * * * *
755658 TTGTGTATAATGCCTAATCACAAAATGAATGAAGATCCTTACTACAATCTATGTTTGTCTCCTTT
194 ATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTGTCTCATTT
* * * *
755723 GAGGCACAAACTTAGA-TATTACAAAAACTGGTGGGAAGAAAGCATTTCTTGTGAAACCAAAGTA
259 GAGGCACGAACTTAGACT-TTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
* * * * * *
755787 TCAATACCATGTATCCATATCAGAAGACTAGGTTTATGGTG-CTAATGCAAAAAAAATGGGGATT
323 TCAATACCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAGAATGGGGATT
* * * *
755851 AGTGTAACTATTCATGTTTGTCTTATTTAAGCGACAAACTTTGATTCTATCAATAACGGTGGAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAA
*
755916 GAAAAGCTTCTCCTGCGACACC
453 GAAAAGCTTCTCTTGCGACACC
*
755938 AAAGAATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA-
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* *
756002 CGGAGACTGTTACAAGAATCAATGCTTATCTTATTTA-AGGGTCAAACTTTGATTTTAA-GAAAA
66 C-GAGACAGTTACGAGAATCAATGCTTATCTTATTTAGA-GGTCAAACTTTGATTTTAAGGAAAA
* * * * *
756065 TTAAGGCCAAGAAAAAATTTCCAAGCCAAAGAAAACCATCAATATCATTTATCTTAATAAGAAGA
129 -T-AGGCAAAGAAAAGATTTCCATGCCAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGA
*
756130 ATATGTTTATAGTGCCTCATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTGTCTCAT
192 ATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTGTCTCAT
* * * * * *
756195 TTGAGGCACGAACTTGGACTTTTCAAAGATTGGTGGGACGAAAGCGTTTCTTACGAAACCAAAGC
257 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGC
* * * * * * ** *
756260 GTCAATATCGTGTATCCTTATGGGAAGACTATTTTTATGGTGCCTAATCCTGAAAGGGGTAGGGA
322 ATCAATACCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAGAATGGGGA
* ** * ** *
756325 TTAGTATGAGTGTTTGTGGTTGTCTTATTTAAGAGACAGTCTTTGATTCTATCAATAATGGTGGA
386 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
*
756390 AAGAAAATCTTCTCTTGCGACACC
451 AAGAAAAGCTTCTCTTGCGACACC
* * * * *
756414 AAAGCAGCAATGTCTTGTATCCTAATGTAGGGAATGTGTTTTTGGTTCCCAATCTTTAAAAAAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * *
756479 CGAGACAGTTACGATAATCAATGCTTATCTTATTTGAGAGAT-GAACTTTGATTTTAAGGAAAAT
66 CGAGACAGTTACGAGAATCAATGCTTATCTTATTT-AGAGGTCAAACTTTGATTTTAAGGAAAAT
* * * *
756543 AGGGCAAAGAAAAGATTTCGATGCCAAAGAAAACCTTCAATATCGTTTATC-CAATTGAGGAGAA
130 A-GGCAAAGAAAAGATTTCCATGCCAAAGAAAACCATCAATATCATTTATCTTAA-TGAGGAGAA
* * * * **
756607 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTATTAGAATCCACATTTGTCTCATT
193 TATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTGTCTCATT
* *
756672 TGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAATAAAGCATTTCTTGCGAAACCAAAGCA
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCA
* * *
756737 TCAATGCCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTGCCA-CAGAAAAGAATGGGGA
323 TCAATACCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT--AATCCGAAAAGAATGGGGA
*
756801 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGAA
386 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGA
**
756866 AAGAAAAGCTTCTCTCACGACACC
451 AAGAAAAGCTTCTCTTGCGACACC
*
756890 AAAGCAACAATGTCATGTATCCTAATGAAGGG
1 AAAGCATCAATGTCATGTATCCTAATGAAGGG
756922 TGTAGACACC
Statistics
Matches: 841, Mismatches: 127, Indels: 30
0.84 0.13 0.03
Matches are distributed among these distances:
473 6 0.01
474 304 0.36
475 11 0.01
476 508 0.60
477 10 0.01
478 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (474 bp):
AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
CGAGACAGTTACGAGAATCAATGCTTATCTTATTTAGAGGTCAAACTTTGATTTTAAGGAAAATA
GGCAAAGAAAAGATTTCCATGCCAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGAATAT
GTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTGTCTCATTTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCA
ATACCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAGAATGGGGATTAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAA
AAGCTTCTCTTGCGACACC
Found at i:757224 original size:20 final size:20
Alignment explanation
Indices: 757199--757273 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
757189 TTCATAATTA
757199 GTATCGATACATTGTTCATT
1 GTATCGATACATTGTTCATT
757219 GTATCGATACATTGTTCATT
1 GTATCGATACATTGTTCATT
* *
757239 ATATCGATACATTATTCATT
1 GTATCGATACATTGTTCATT
757259 GTATCGATACATTGT
1 GTATCGATACATTGT
757274 ATCAATACTG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (20 bp):
GTATCGATACATTGTTCATT
Found at i:760413 original size:52 final size:51
Alignment explanation
Indices: 760335--760464 Score: 199
Period size: 52 Copynumber: 2.5 Consensus size: 51
760325 CCCGAAATAT
* *
760335 GAAAAGTTGCTTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGG
1 GAAAA-TTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGG
760387 GAAAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGG
1 GAAAA-TTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGG
*
760439 GCAAATTGCCTGCATGTATCGATACA
1 GAAAATTGCCTGCATGTATCGATACA
760465 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
51 21 0.29
52 47 0.64
53 5 0.07
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (51 bp):
GAAAATTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGG
Found at i:760477 original size:51 final size:50
Alignment explanation
Indices: 760335--760484 Score: 171
Period size: 52 Copynumber: 2.9 Consensus size: 50
760325 CCCGAAATAT
* * *
760335 GAAAAGTTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGG
760387 GAAAATTTGCCTGCATGTATCGATACATTTTAAA-A-TGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA----AAATAGTGTATCGATACATCTGG
*
760439 GCAAA-TTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
760485 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 4, Indels: 13
0.84 0.04 0.12
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
50 1 0.01
51 33 0.38
52 46 0.52
53 1 0.01
54 4 0.05
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (50 bp):
GAAAATTTGCCTGCATGTATCGATACAAAATAGTGTATCGATACATCTGG
Found at i:760491 original size:13 final size:13
Alignment explanation
Indices: 760473--760497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
760463 CAAAGATCAG
760473 TGTATCGATACAA
1 TGTATCGATACAA
760486 TGTATCGATACA
1 TGTATCGATACA
760498 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:760578 original size:13 final size:13
Alignment explanation
Indices: 760560--760584 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
760550 CAAAAAAATA
760560 TGTATCGATACAT
1 TGTATCGATACAT
760573 TGTATCGATACA
1 TGTATCGATACA
760585 ACATTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:765062 original size:52 final size:52
Alignment explanation
Indices: 764992--765112 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
764982 GAAAATTTAT
*
764992 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
765044 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
765096 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
765113 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:765125 original size:52 final size:51
Alignment explanation
Indices: 764992--765132 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
764982 GAAAATTTAT
764992 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
765044 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
765096 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
765133 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:765139 original size:13 final size:13
Alignment explanation
Indices: 765121--765145 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
765111 CAAAGATCAG
765121 TGTATCGATACAA
1 TGTATCGATACAA
765134 TGTATCGATACA
1 TGTATCGATACA
765146 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:765229 original size:13 final size:13
Alignment explanation
Indices: 765211--765235 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
765201 CAAAAAAATA
765211 TGTATCGATACAT
1 TGTATCGATACAT
765224 TGTATCGATACA
1 TGTATCGATACA
765236 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:765231 original size:33 final size:33
Alignment explanation
Indices: 765189--765255 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
765179 AGTAGCTTAA
765189 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
765222 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
765255 A
1 A
765256 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:767043 original size:189 final size:191
Alignment explanation
Indices: 766773--767127 Score: 606
Period size: 189 Copynumber: 1.9 Consensus size: 191
766763 AAAGGATGTT
*
766773 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTC
1 AATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGAT-G-AAAGGTGCCAATATGCTGATTC
* * *
766838 AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTTAAGGCCAGCTACGTTGGACTTA
64 AAGGCCAGCTATATTGGACCTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* * *
766903 AAGGTG-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
129 AAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
766965 AATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGAT-AAAGGTGCCAATATGCTGATTCAA
1 AATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGAAAGGTGCCAATATGCTGATTCAA
*
767029 GGCCAGCTATATTGGGCCTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
66 GGCCAGCTATATTGGACCTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
767094 GATGAAGATGCCAATATGCTGATTCAAGGCCAGC
131 GATGAAGATGCCAATATGCTGATTCAAGGCCAGC
767128 GATATTGGGC
Statistics
Matches: 154, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
189 88 0.57
190 27 0.18
192 39 0.25
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (191 bp):
AATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACCTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
Found at i:767091 original size:92 final size:92
Alignment explanation
Indices: 766773--767145 Score: 514
Period size: 92 Copynumber: 4.0 Consensus size: 92
766763 AAAGGATGTT
766773 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTC
1 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT---AAAGGTGCCAATATGCTGATTC
766838 AAGGCCAGCTATATTGGACTTAAAGGTGCC
63 AAGGCCAGCTATATTGGACTTAAAGGTGCC
* * * * * *
766868 AATGTGCTGATTTAAGGCCAGCTACGTTGGACTTAAAGGT-GAGGTGCCAATGTGCTGATTCAAG
1 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
*
766932 GCCAGCTACATTGGACTTAAAGATGAAGGTGCC
66 GCCAGCTATATTGGACTT----A--AAGGTGCC
*
766965 AATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
1 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
* *
767030 GCCAGCTATATTGGGCCTAAAGGTGCC
66 GCCAGCTATATTGGACTTAAAGGTGCC
* * *
767057 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAG
1 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
* *
767122 GCCAGCGATATTGGGCTTAGAAGG
66 GCCAGCTATATTGGACTTA-AAGG
767146 GTTGCCACTG
Statistics
Matches: 247, Mismatches: 23, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
91 39 0.16
92 86 0.35
93 4 0.02
94 1 0.00
95 37 0.15
97 43 0.17
98 37 0.15
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
GCCAGCTATATTGGACTTAAAGGTGCC
Found at i:767135 original size:49 final size:49
Alignment explanation
Indices: 766773--767127 Score: 457
Period size: 49 Copynumber: 7.4 Consensus size: 49
766763 AAAGGATGTT
*
766773 AATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCC
* *
766825 AATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* * *
766868 AATGTGCTGATTTAAGGCCAGCTACGTTGGACTTAAAGGTG-AGGTGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
766916 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* * *
766965 AATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* * * *
767014 AATATGCTGATTCAAGGCCAGCTATATTGGGCCT----A--AAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
*
767057 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCC
1 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
*
767106 AATATGCTGATTCAAGGCCAGC
1 AATGTGCTGATTCAAGGCCAGC
767128 GATATTGGGC
Statistics
Matches: 264, Mismatches: 26, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
43 76 0.29
45 1 0.00
47 1 0.00
48 46 0.17
49 109 0.41
52 31 0.12
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
Found at i:767216 original size:34 final size:33
Alignment explanation
Indices: 767161--767889 Score: 620
Period size: 34 Copynumber: 21.8 Consensus size: 33
767151 CACTGACTTG
* *
767161 TGTGGGCTTTGGAAAGGGAAAAAGATGCCACGGAAT
1 TGTGGGCTTT--AAAAGGAAAAAG-TGCCACGGAGT
*
767197 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-GG-AAAA-AGTGCCACGGAGT
**
767232 TGTGGGCTTTAAAA-GAAAAAGGTGCCATAGAGT
1 TGTGGGCTTTAAAAGGAAAAA-GTGCCACGGAGT
* **
767265 TGTGGGCTTTGAAAAGGGAAAAAGAGTTCCACAAAGT
1 TGTGGGCTTT-AAAA-GG-AAAA-AGTGCCACGGAGT
767302 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAA-GTGCCACGGAGT
**
767335 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAAAGT
1 TGTGGGCTTT-AAAA-GG-AAAA-AGTGCCACGGAGT
767372 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAA-GTGCCACGGAGT
* * *
767405 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-A-GGAAAAAGTGCCACGGAGT
767439 TGTGGGCTTTAAAAGG-----GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
* * *
767467 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-A-GGAAAAAGTGCCACGGAGT
767501 TGTGGGCTTTAAAAGG-----GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
* * *
767529 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-A-GGAAAAAGTGCCACGGAGT
*
767563 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
* *
767596 TGTGGGC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-A-GGAAAAAGTGCCACGGAGT
767630 TGTGGGCTTTAAAAGG-----GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
* * *
767658 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-A-GGAAAAAGTGCCACGGAGT
767692 TGTGGGCTTTAAAAGG-----GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
* * *
767720 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-A-GGAAAAAGTGCCACGGAGT
*
767754 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
767787 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GG-AAAA-AGTGCCACGGAGT
767824 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAA-GTGCCACGGAGT
*
767858 TGCGGGCTTTAAAAAGGGAAAGAGAGTGCCAC
1 TGTGGGCTTT-AAAA-GGAAA-A-AGTGCCAC
767890 AAAGTTGTAG
Statistics
Matches: 577, Mismatches: 49, Indels: 133
0.76 0.06 0.18
Matches are distributed among these distances:
27 20 0.03
28 72 0.12
29 4 0.01
32 13 0.02
33 130 0.23
34 159 0.28
35 62 0.11
36 35 0.06
37 79 0.14
38 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (33 bp):
TGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
Found at i:767303 original size:70 final size:67
Alignment explanation
Indices: 767178--767859 Score: 858
Period size: 62 Copynumber: 10.3 Consensus size: 67
767168 TTTGGAAAGG
* * * *
767178 GAAAAAGATGCCACGGAATTGTGGACTTAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGA-TGAAAAA-AGTGCCACGGAATTGTGGGCTTT
767242 AAAA
64 AAAA
** * * * *
767246 GAAAAAGGTGCCATAGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTTCCAC-AAAGTTGTGGGC
1 GAAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAGA-TGAAAAA-AGTGCCACGGAA-TTGTGGGC
767309 TTTAAAA
61 TTTAAAA
* * *
767316 GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCAC-AAAGTTGTGGGC
1 GAAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAGA-TGAAAAA-AGTGCCACGGAA-TTGTGGGC
767379 TTTAAAA
61 TTTAAAA
767386 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
767451 AA
66 AA
767453 G-----GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
767513 AA
66 AA
767515 G-----GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
767575 AA
66 AA
* *
767577 GAAAAAAGTGCCACGGAGTTGTGGGCTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
767642 AA
66 AA
767644 G-----GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
767704 AA
66 AA
767706 G-----GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
767766 AA
66 AA
* * * *
767768 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAGA-TGAAAAA-AGTGCCACGGAATTGTGGGCT
767832 TTAAACA
62 TTAAA-A
767839 GAAAAAGGTGCCACGGAGTTG
1 GAAAAAGGTGCCACGGAGTTG
767860 CGGGCTTTAA
Statistics
Matches: 571, Mismatches: 23, Indels: 37
0.90 0.04 0.06
Matches are distributed among these distances:
62 246 0.43
67 102 0.18
68 35 0.06
69 15 0.03
70 152 0.27
71 21 0.04
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (67 bp):
GAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAA
AA
Found at i:767649 original size:191 final size:192
Alignment explanation
Indices: 767161--768219 Score: 1011
Period size: 191 Copynumber: 5.3 Consensus size: 192
767151 CACTGACTTG
* * * *
767161 TGTGGGCTTTGGAAAGGGAAAAAGATGCCACGGAATTGTGGAC-TTAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTT--AAAAGAAAAAAG-TGCCACGGAGTTGTGGGCTTTAAAA-GGAAAAA-AGTGCC
**
767225 ACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCATAGAGTTGTGGGCTTTGAAA-AGGGAAAAAG
61 ACGGAGTTGTGGGCTTTAAAAG----AGGTGCCACGGAGTTGTGGGCTTT-AAAGA-GGAAAAA-
* * *
767289 AGTTCCACAAAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGA
119 AGTGCCACGAA-TTGTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGGCTTT-AAAA-TGA
*
767354 AAAAGAGTGCCAC-AAAGT
176 AAAA-AGTGCCACGGAA-T
* * *
767372 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGG
1 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAA-AGGAAAAAAGTGCCACGG
* * *
767436 AATTGTGGGCTTTAAAAG-GGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGA
65 AGTTGTGGGCTTTAAAAGAGGTGCCACGGAGTTGTGGGCTTTAAAGAGGAAAAAAGTGCCAC-GA
*
767499 ATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
129 ATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAA-ATGAAAAAAGTGCCACGGAAT
*
767563 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGC-TTAAAGATGAAAAAAGTGCCACGG
1 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAA-AGGAAAAAAGTGCCACGG
* * *
767627 AATTGTGGGCTTTAAAAG-GGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGA
65 AGTTGTGGGCTTTAAAAGAGGTGCCACGGAGTTGTGGGCTTTAAAGAGGAAAAAAGTGCCAC-GA
*
767690 ATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
129 ATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAA-ATGAAAAAAGTGCCACGGAAT
767754 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
1 TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAAAA-AGTGCCAC
* * *
767819 GGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAAAGGGAAAGAGAG
63 GGAGTTGTGGGCTTTAAA-AG----AGGTGCCACGGAGTTGTGGGCTTTAAAGA-GGAAA-AAAG
* * * *
767884 TGCCAC-AA-AGT----TGT---A-GGTGCCACAGAGTTGTGGGCTTTAAAA-GAAAAAGGTGCC
121 TGCCACGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAATGAAAAAAGTGCC
*
767938 ACGGAGT
186 ACGGAAT
* *
767945 TGTGGGCTTTGAAAAGGAAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA-GAAAAAGGTGCC
1 TGTGGGCTTT-AAAA-G--AAAAA-AGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAAGTGCC
768009 ACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAA-AGGAAAAAAA
61 ACGGAGTTGTGGGCTTTAAAAG----AGGTGCCACGGAGTTGTGGGCTTT-AAAGAGG--AAAAA
* * *
768073 GAGTGCCATAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
119 -AGTGCCA-CGAATTGTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGGCTTTAAAATGAA
* * *
768138 AAAGGTGCCATGGAGT
177 AAAAGTGCCACGGAAT
* * * * *
768154 TATGGGC-TTAAAGATGAAAAAAGTGCCACGAAATTGTGGGCTTT-AAAGGAAAAGA-TGCCACT
1 TGTGGGCTTTAAA-A-GAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAAGTGCCACG
768216 GAGT
64 GAGT
768220 CATGGACTTT
Statistics
Matches: 753, Mismatches: 48, Indels: 101
0.83 0.05 0.11
Matches are distributed among these distances:
190 2 0.00
191 296 0.39
192 75 0.10
193 25 0.03
194 45 0.06
195 13 0.02
196 24 0.03
199 25 0.03
200 31 0.04
201 11 0.01
202 22 0.03
203 9 0.01
204 13 0.02
205 25 0.03
206 5 0.01
207 30 0.04
208 58 0.08
209 34 0.05
211 10 0.01
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (192 bp):
TGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAAGTGCCACGGA
GTTGTGGGCTTTAAAAGAGGTGCCACGGAGTTGTGGGCTTTAAAGAGGAAAAAAGTGCCACGAAT
TGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAATGAAAAAAGTGCCACGGAAT
Found at i:767904 original size:158 final size:158
Alignment explanation
Indices: 767742--768029 Score: 506
Period size: 158 Copynumber: 1.8 Consensus size: 158
767732 GATGAAAAAA
* *
767742 GTGCCACGGAATTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGG-GA
1 GTGCCACAGAATTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
*
767806 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAA
66 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAA
767871 AAGGGAAAGAGAGTGCCACAAAGTTGTAG
130 AAGGGAAAGAGAGTGCCACAAAGTTGTAG
* *
767900 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
1 GTGCCACAGAATTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
*
767965 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
66 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAA
768030 GAAAAAGGTG
Statistics
Matches: 123, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
158 92 0.75
159 31 0.25
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.20
Consensus pattern (158 bp):
GTGCCACAGAATTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAA
AGGGAAAGAGAGTGCCACAAAGTTGTAG
Found at i:767935 original size:33 final size:33
Alignment explanation
Indices: 767898--768219 Score: 405
Period size: 33 Copynumber: 9.4 Consensus size: 33
767888 ACAAAGTTGT
*
767898 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
767931 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT-AAAA-G--AAAA
*
767968 AGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
1 AG-GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
768002 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
768035 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT-AAAA-G--AAAA
**
768072 AGAGTGCCATAGAGTTGTGGGCTTTAAAAGAAAA
1 AG-GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
768106 AGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAA
* *
768140 AGGTGCCATGGAGTTATGGGC-TTAAAGATGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAA-A-GAAAA
* * * *
768174 AAGTGCCACGAAATTGTGGGCTTT-AAAGGAAA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
* *
768206 AGATGCCACTGAGT
1 AGGTGCCACGGAGT
768220 CATGGACTTT
Statistics
Matches: 255, Mismatches: 20, Indels: 29
0.84 0.07 0.10
Matches are distributed among these distances:
32 16 0.06
33 101 0.40
34 71 0.28
35 4 0.02
36 2 0.01
37 20 0.08
38 41 0.16
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (33 bp):
AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
Found at i:767960 original size:87 final size:89
Alignment explanation
Indices: 767812--767985 Score: 280
Period size: 88 Copynumber: 2.0 Consensus size: 89
767802 GGGAAAAAGA
* *
767812 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAAAGG-G
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAAAGGAA
*
767876 AAAGAGAGTGCCACAAAGTTGTAG
66 AAAAAGAGTGCCACAAAGTTGTAG
* *
767900 GTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAAAGGAA
*
767964 AAAAAGAGTGCCACAGAGTTGT
66 AAAAAGAGTGCCACAAAGTTGT
767986 GGGCTTTAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 35 0.44
88 44 0.56
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (89 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGCGGGCTTTAAAAAGGAA
AAAAAGAGTGCCACAAAGTTGTAG
Found at i:768016 original size:71 final size:66
Alignment explanation
Indices: 767898--768219 Score: 398
Period size: 71 Copynumber: 4.7 Consensus size: 66
767888 ACAAAGTTGT
767898 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
1 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-G-
767963 AAAAA
63 -AAAA
767968 AGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAA
1 AG-GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAA
768033 AA
65 AA
* **
768035 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAAAGAGTGCCATAGAGTTGTGGGCTTTAAA
1 AGGTGCCACAGAGTTGTGGGCTTT-AAAA-G--AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAA
768100 AGAAAA
61 AGAAAA
* * *
768106 AGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCATGGAGTTATGGGC-TTAAAGATG
1 AGGTGCCACAGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA-A-G
768170 AAAA
63 AAAA
* * * * *
768174 AAGTGCCAC-GAAATTGTGGGCTTT-AAAGGAAAAGATGCCACTGAGT
1 AGGTGCCACAG-AGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGT
768220 CATGGACTTT
Statistics
Matches: 231, Mismatches: 12, Indels: 22
0.87 0.05 0.08
Matches are distributed among these distances:
66 44 0.19
67 29 0.13
68 32 0.14
69 1 0.00
70 13 0.06
71 112 0.48
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (66 bp):
AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
A
Found at i:768063 original size:104 final size:104
Alignment explanation
Indices: 767898--768219 Score: 487
Period size: 104 Copynumber: 3.1 Consensus size: 104
767888 ACAAAGTTGT
*
767898 AGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
767963 AAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
66 AAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
768002 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
1 AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
*
768067 AAAAAAGAGTGCCATAGAGTTGTGGGCTTTAAAAGAAAA
66 AAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
* *
768106 AGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCATGGAGTTATGGGC-TT--AAA-G
1 AGGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGG
* * *
768167 ATGAAAAA-AGTGCCAC-GAAATTGTGGGCTTT-AAAGGAAA
65 A-AAAAAAGAGTGCCACAG-AGTTGTGGGCTTTAAAAGAAAA
* *
768206 AGATGCCACTGAGT
1 AGGTGCCACGGAGT
768220 CATGGACTTT
Statistics
Matches: 205, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
100 20 0.10
101 21 0.10
102 8 0.04
104 128 0.62
105 28 0.14
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (104 bp):
AGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
AAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA
Found at i:768245 original size:31 final size:31
Alignment explanation
Indices: 768209--768291 Score: 148
Period size: 31 Copynumber: 2.7 Consensus size: 31
768199 AAGGAAAAGA
* *
768209 TGCCACTGAGTCATGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
768240 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
768271 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
768292 AAAAAGGTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:776573 original size:52 final size:51
Alignment explanation
Indices: 776495--776624 Score: 199
Period size: 52 Copynumber: 2.5 Consensus size: 51
776485 CCCGAAATAT
* *
776495 GAAAAGTTGCTTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGG
1 GAAAA-TTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGG
776547 GAAAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGG
1 GAAAA-TTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGG
*
776599 GCAAATTGCCTGCATGTATCGATACA
1 GAAAATTGCCTGCATGTATCGATACA
776625 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
51 21 0.29
52 47 0.64
53 5 0.07
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (51 bp):
GAAAATTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGG
Found at i:776637 original size:51 final size:50
Alignment explanation
Indices: 776495--776644 Score: 171
Period size: 52 Copynumber: 2.9 Consensus size: 50
776485 CCCGAAATAT
* * *
776495 GAAAAGTTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGG
776547 GAAAATTTGCCTGCATGTATCGATACATTTTAAA-A-TGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA----AAATAGTGTATCGATACATCTGG
*
776599 GCAAA-TTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
776645 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 4, Indels: 13
0.84 0.04 0.12
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
50 1 0.01
51 33 0.38
52 46 0.52
53 1 0.01
54 4 0.05
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (50 bp):
GAAAATTTGCCTGCATGTATCGATACAAAATAGTGTATCGATACATCTGG
Found at i:776651 original size:13 final size:13
Alignment explanation
Indices: 776633--776657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
776623 CAAAGATCAG
776633 TGTATCGATACAA
1 TGTATCGATACAA
776646 TGTATCGATACA
1 TGTATCGATACA
776658 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:776738 original size:13 final size:13
Alignment explanation
Indices: 776720--776744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
776710 CAAAAAAATA
776720 TGTATCGATACAT
1 TGTATCGATACAT
776733 TGTATCGATACA
1 TGTATCGATACA
776745 ACATTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:779528 original size:78 final size:78
Alignment explanation
Indices: 779396--779915 Score: 508
Period size: 78 Copynumber: 6.6 Consensus size: 78
779386 TCATTCATGT
* * * * * ** *
779396 TTTTATTTCTAAAACACCGATTCTCCACAATCGGGGATACTCCAACCCTATTA-TTTCCACGGGG
1 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGG
779460 ATACTCCAACCCCA
65 ATACTCCAACCCCA
* * * * * * *
779474 TTTTATTTCCAAAATATCAATTTTTTATAGTCGGGGATACTCCAATCCTGTTATTTTTGAGGGGA
1 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
* *
779539 TACTCCAACCTCG
66 TACTCCAACCCCA
* * * * *
779552 GTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAACCTCGTTATTTTTGAGGAGA
1 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
779617 TACTCCAACCCCA
66 TACTCCAACCCCA
* * *
779630 GTTTTATTTCCAAAACACCAAATTTTCATAAT-TGGGATACTCCAACCCCG-TAATTTCTGAGGG
1 -TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGG
*
779693 GATACTCCAACCCTA
64 GATACTCCAACCCCA
* * * ** * *
779708 GTTTTAATTCCAAAATACCAATTTTTCACAATCGAAGATACTCTAACCCCATTATTTTCGAGGGG
1 -TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGG
779773 ATACTCCAACCCCGA
65 ATACTCCAACCCC-A
* * * * * *
779788 TTTTATTTCCAAAACATCAGTTTTTCACAATCGGGGATACTTCAATCCCGTTA-TTTCTGAAGGG
1 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGG
* * *
779852 ATAGTCTAACCCTAA
65 ATACTCCAACCC-CA
* * ** * * *
779867 TTTTATTTCTAGAACACTGATTTTCCATAATCGAGGATACTCCAGCCCC
1 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCC
779916 ATCAATTTTG
Statistics
Matches: 361, Mismatches: 73, Indels: 15
0.80 0.16 0.03
Matches are distributed among these distances:
77 5 0.01
78 190 0.53
79 159 0.44
80 7 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (78 bp):
TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
TACTCCAACCCCA
Found at i:779763 original size:157 final size:158
Alignment explanation
Indices: 779396--779917 Score: 550
Period size: 157 Copynumber: 3.3 Consensus size: 158
779386 TCATTCATGT
* * * * * ** * * *
779396 TTTTATTTCTAAAACACCGATTCTCCACAATCGGGGATACTCCAACCCTATTA-TTTCCACGGGG
1 TTTTAATTCCAAAACACCAATTTTTCACAATCGAAGATACTCCAACCCCATTATTTTCGA-GGAG
* * * *
779460 ATACTCCAACCCCA-TTTTATTTCCAAAATATCAATTTTTTATAGTCGGGGATACTCCAATCCTG
65 ATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAATCCCG
* *
779524 TTATTTTTGAGGGGATACTCCAA-CCTCG
130 TTATTTCTGAGGGGATACTCCAACCCTAG
* * * * ** * * *
779552 GTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAACCTCGTTATTTTTGAGGAGA
1 TTTTAATTCCAAAACACCAATTTTTCACAATCGAAGATACTCCAACCCCATTATTTTCGAGGAGA
* * * *
779617 TACTCCAACCCCAGTTTTATTTCCAAAACACCAAATTTTCATAAT-TGGGATACTCCAACCCCGT
66 TACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAATCCCGT
*
779681 AATTTCTGAGGGGATACTCCAACCCTAG
131 TATTTCTGAGGGGATACTCCAACCCTAG
* * *
779709 TTTTAATTCCAAAATACCAATTTTTCACAATCGAAGATACTCTAACCCCATTATTTTCGAGGGGA
1 TTTTAATTCCAAAACACCAATTTTTCACAATCGAAGATACTCCAACCCCATTATTTTCGAGGAGA
* * *
779774 TACTCCAACCCC-GATTTTATTTCCAAAACATCAGTTTTTCACAATCGGGGATACTTCAATCCCG
66 TACTCCAACCCCAG-TTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAATCCCG
* * * *
779838 TTATTTCTGAAGGGATAGTCTAACCCTAA
130 TTATTTCTGAGGGGATACTCCAACCCTAG
* * * ** * * * *
779867 TTTTATTTCTAGAACACTGATTTTCCATAATCGAGGATACTCCAGCCCCAT
1 TTTTAATTCCAAAACACCAATTTTTCACAATCGAAGATACTCCAACCCCAT
779918 CAATTTTGAA
Statistics
Matches: 302, Mismatches: 59, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
156 97 0.32
157 126 0.42
158 79 0.26
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (158 bp):
TTTTAATTCCAAAACACCAATTTTTCACAATCGAAGATACTCCAACCCCATTATTTTCGAGGAGA
TACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAATCCCGT
TATTTCTGAGGGGATACTCCAACCCTAG
Found at i:781087 original size:49 final size:49
Alignment explanation
Indices: 780872--781861 Score: 674
Period size: 49 Copynumber: 20.8 Consensus size: 49
780862 GTGATAAAGA
* * *
780872 TGCCAATATGCTGATTCACGACCAACGATATTAGG-CTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT--G---AAGG
** * * * * *
780926 ATATCAATGTGCTGATTCACA-GTCAGCGATATTAGACTTGAAGAAGAA--
1 -TGCCAATATGCTGATTCA-AGGCCAGCGATATTGGACTTAAAGATGAAGG
* * ** * * * * *
780974 TGCCAATGTTCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA--AA-GATGAAGG
* * * * *
781026 TGCCAATATGTTGATTCAAGGCCAACGATATCGAACTTAAGGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * * *
781075 TGCCAATGTGTTGACTCAAGGCCAGCGACATTAGACTTCAAGAAGAA--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * **
781122 TGCCAATGTGTTGATTCAAGGCCAACAACATTGGGTTCTAAAGATGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT-TAAAGAT---GAAGG
*
781175 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
781224 TGCCAATGTGTTGATTCAAGGCCAACGACATTGGACTTAAAGATG-ATG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
781272 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGA-CAGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AGG
* *
781321 TGCCAATATACTGATTCAAGGCCAACGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
781364 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
781413 TGCTAATATGCTAATTTAAGGCCAGCGATATTGGACTT-AA-A-G-A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
781456 CGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * ** *
781495 TGCCGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
781544 TGCTAATATGCTGATTCAAGGCCAGCGATGTTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * ** *
781587 TGCCAATGTGCTGATTTAAGGCCAGCGACATTGGTCTTAAAGACAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
781636 TGCCAATATGCTGATTCAAGGCC-GACGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAG-CGATATTGGACTTAAAGATGAAGG
* * * * *
781679 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
*
781728 TGCCAATATACTGATTCAAGGCCAGCGATATTGGAC-T-----TGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
781771 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGG
* * *
781823 TGCCAATATGCTGATTCAAGGCTAGCAATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
781862 GAAGGGTTGC
Statistics
Matches: 737, Mismatches: 141, Indels: 117
0.74 0.14 0.12
Matches are distributed among these distances:
39 34 0.05
40 1 0.00
42 1 0.00
43 171 0.23
44 3 0.00
45 4 0.01
46 2 0.00
47 62 0.08
48 49 0.07
49 266 0.36
50 6 0.01
51 3 0.00
52 73 0.10
53 30 0.04
54 1 0.00
55 31 0.04
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:781232 original size:149 final size:146
Alignment explanation
Indices: 780872--781813 Score: 564
Period size: 131 Copynumber: 6.6 Consensus size: 146
780862 GTGATAAAGA
* * **
780872 TGCCAATATGCTGATTCACGACCAACGATATTAGG-CTTAAAGATGAGAAAAAGGATATCAATGT
1 TGCCAATATGCTGATTCAAGGCCAACGATATT-GGACTT-AAGAT--G---AAGG-TGCCAATGT
* * * * **
780936 GCTGATTCACA-GTCAGCGATATTAGACTTGAAGAAGAATGCCAATGT-TCTGAGACAAGGCCAG
58 GTTGATTCA-AGGCCAGCGACATTAGACTTAAAGAAGAATGCCAATGTGT-TGATTCAAGGCCAG
* * *
780999 CGACATTGGG-CTTAGGAATGTTA-AAGA
121 CGACATTGGGTCTAAAG-ATG--AGAAGG
* * * *
781026 TGCCAATATGTTGATTCAAGGCCAACGATATCGAACTTAAGGATGAAGGTGCCAATGTGTTGACT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAA-GATGAAGGTGCCAATGTGTTGATT
* * *
781091 CAAGGCCAGCGACATTAGACTTCAAGAAGAATGCCAATGTGTTGATTCAAGGCCAACAACATTGG
65 CAAGGCCAGCGACATTAGACTTAAAGAAGAATGCCAATGTGTTGATTCAAGGCCAGCGACATTGG
781156 GTTCTAAAGATGACGAAGG
130 G-TCTAAAGATGA-GAAGG
* *
781175 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGTTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AAGATGAAGGTGCCAATGTGTTGATT
* * * * * * * *
781240 CAAGGCCAACGACATTGGACTTAAAGATGATGTGCCAATATGCTGATTCAAGGCTAGCGATATT-
65 CAAGGCCAGCGACATTAGACTTAAAGAAGA-ATGCCAATGTGTTGATTCAAGGCCAGCGACATTG
* *
781304 GGACTTAAAGA-CAG-AGG
129 GGTC-TAAAGATGAGAAGG
* *
781321 TGCCAATATACTGATTCAAGGCCAACGATATTGGACTT---A--AAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGATGAAGGTGCCAATGTGTTGATTC
* * * * * * * * *
781381 AAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCTAATATGCTAATTTAAGGCCAGCGATATT-
66 AAGGCCAGCGACATTAGACTTAAAGAAGAA--TGCCAATGTGTTGATTCAAGGCCAGCGACATTG
* *
781445 GGACT-----T-A-AAGA
129 GGTCTAAAGATGAGAAGG
* * * * * * *
781456 CGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTC-T----T----GTGCCGATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGATGAAGGTGCCAATGTGTTGATTC
* * * * * * **
781512 AAGGCCAGCGACATTGGTCTTAAAGACAAAGATGCTAATATGCTGATTCAAGGCCAGCGATGTT-
66 AAGGCCAGCGACATTAGACTTAAAGA-AGA-ATGCCAATGTGTTGATTCAAGGCCAGCGACATTG
*
781576 GGACT-----T-A-AAGG
129 GGTCTAAAGATGAGAAGG
* * * * * ** * * *
781587 TGCCAATGTGCTGATTTAAGGCCAGCGACATTGGTCTTAAAGACAAAGATGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AAGATGAAGGTGCCAATGTGTTGATT
* * * *
781652 CAAGGCC-GACGATATTGGACTTAAAG--G--TGCTAATGTGCTGATTCAAGGCCAGCGACATT-
65 CAAGGCCAG-CGACATTAGACTTAAAGAAGAATGCCAATGTGTTGATTCAAGGCCAGCGACATTG
781711 GGTCTTAAAGAT-A-AAGG
129 GGTC-TAAAGATGAGAAGG
* * *
781728 TGCCAATATACTGATTCAAGGCCAGCGATATTGGAC-T----TGAAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGATGAAGGTGCCAATGTGTTGATTC
* * *
781788 AAGGCCAACGACATTGGTCTTAAAGA
66 AAGGCCAGCGACATTAGACTTAAAGA
781814 TGAAAAAGGT
Statistics
Matches: 663, Mismatches: 88, Indels: 92
0.79 0.10 0.11
Matches are distributed among these distances:
131 116 0.17
132 2 0.00
133 1 0.00
134 1 0.00
135 105 0.16
136 1 0.00
140 50 0.08
141 105 0.16
142 1 0.00
146 38 0.06
147 3 0.00
148 69 0.10
149 101 0.15
150 32 0.05
152 1 0.00
153 3 0.00
154 34 0.05
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (146 bp):
TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGATGAAGGTGCCAATGTGTTGATTC
AAGGCCAGCGACATTAGACTTAAAGAAGAATGCCAATGTGTTGATTCAAGGCCAGCGACATTGGG
TCTAAAGATGAGAAGG
Found at i:781622 original size:223 final size:223
Alignment explanation
Indices: 781026--781716 Score: 738
Period size: 223 Copynumber: 3.0 Consensus size: 223
781016 ATGTTAAAGA
* * * * * * ** * * ** *
781026 TGCCAATATGTTGATTCAAGGCCAACGATATCGAACTTAAGGATGAAGGTGCCAATGTGTTGACT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATACTGATT
* * * * * * *
781091 CAAGGCCAGCGACATTAGACTTCAAGAAGAATGCCAATGTGTTGATTCAAGGCCAACAACATTGG
66 CAAGGCCAACGATATTGGACTT--A-AAG-GTGCCAATGTGCTGATTCAAGGCCAGCGACATT-G
*
781156 GT-TCTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
126 GTCT-TAAAGAT---GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
* * *
781220 AAGGTGCCAATGTGTTGATTCAAGGCCAACGACATTGGACTTAAAGATGATG
184 -A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGG---T----CT--TG
* * * *
781272 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGACAGAGGTGCCAATATACTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATACTGATT
781337 CAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
66 CAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
* * * *
781402 AAAGATGAAGGTGCTAATATGCTAATTTAAGGCCAGCGATATTGGACTTAAAGACGCCAATGTGC
131 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGCCAATGTGC
781467 TGATTCAAGGCCAGCGACATTGGTCTTG
196 TGATTCAAGGCCAGCGACATTGGTCTTG
* * * * *
781495 TGCCGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGATGCTAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATACTGATT
* * *
781560 CAAGGCCAGCGATGTTGGACTTAAAGGTGCCAATGTGCTGATTTAAGGCCAGCGACATTGGTCTT
66 CAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
** * * *
781625 AAAGACAAAGATGCCAATATGCTGATTCAAGGCC-GACGATATTGGACTTAAAGGTGCTAATGTG
131 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG-CGATATTGGACTTAAAGATGCCAATGTG
781689 CTGATTCAAGGCCAGCGACATTGGTCTT
195 CTGATTCAAGGCCAGCGACATTGGTCTT
781717 AAAGATAAAG
Statistics
Matches: 394, Mismatches: 49, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
222 1 0.00
223 201 0.51
225 1 0.00
229 1 0.00
232 31 0.08
234 1 0.00
235 1 0.00
236 1 0.00
237 2 0.01
238 39 0.10
241 10 0.03
242 30 0.08
243 3 0.01
244 1 0.00
246 71 0.18
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (223 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATACTGATT
CAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGCCAATGTGC
TGATTCAAGGCCAGCGACATTGGTCTTG
Found at i:781760 original size:315 final size:319
Alignment explanation
Indices: 781183--781808 Score: 945
Period size: 315 Copynumber: 2.0 Consensus size: 319
781173 GGCGCCAATA
* ** * * *
781183 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGTTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCCA
* *
781248 ACGACATTGGACTTAAAGATGATGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAA
66 ACGACATTGGACTTAAAGATGA-GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA
* *
781313 GACAGAGGTGCCAATATACTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGA
130 GACAAAGATGCCAATATACTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGA
* * * *
781378 TTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCTAATATGCTAATTTAAGGCCAGCGATA
195 TTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATACTAATTCAAGGCCAGCGATA
*
781443 TTGGACTTAAAGACGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTGTGCCGATG
260 TTGGACTTAAAGACGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTGTGCCGATG
* *
781503 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGATGCTAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCCA
* ** * * *
781568 GCGATGTTGGACTT-AA-A-G-GTGCCAATGTGCTGATTTAAGGCCAGCGACATTGGTCTTAAAG
66 ACGACATTGGACTTAAAGATGAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
* * *
781629 ACAAAGATGCCAATATGCTGATTCAAGGCCGACGATATTGGACTTAAAGGTGCTAATGTGCTGAT
131 ACAAAGATGCCAATATACTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGAT
*
781694 TCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATACTGATTCAAGGCCAGCGATAT
196 TCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATACTAATTCAAGGCCAGCGATAT
* **
781759 TGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTT
261 TGGACTTAAAGACGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTT
781809 AAAGATGAAA
Statistics
Matches: 276, Mismatches: 30, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
315 204 0.74
317 1 0.00
318 1 0.00
319 2 0.01
320 68 0.25
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (319 bp):
TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCCA
ACGACATTGGACTTAAAGATGAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
ACAAAGATGCCAATATACTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGAT
TCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATACTAATTCAAGGCCAGCGATAT
TGGACTTAAAGACGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTGTGCCGATG
Found at i:781813 original size:92 final size:92
Alignment explanation
Indices: 781026--781866 Score: 739
Period size: 92 Copynumber: 9.0 Consensus size: 92
781016 ATGTTAAAGA
* * * * ** * * * * *
781026 TGCCAATATGTTGATTCAAGGCCAACGATATCGAACTTAAGGATGAAGGTGCCAATGTGTTGACT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* * *
781091 CAAGGCCAGCGACATTAGACTTCAAGAAGAA
66 CAAGGCCAGCGATATTGGACTT---GAAG-G
* * *
781122 TGCCAATGTGTTGATTCAAGGCCAACAACATTGGGT-TCTAAAGATGACGAAGGCGCCAATATGC
1 TGCCAATGTGCTGATTCAAGGCCAACGACATT-GGTCT-TAAAGAT-A--AAGGTGCCAATATGC
781186 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
61 TGATTCAAGGCCAGCGATATTGGAC-T-----TGAAGG
* * * *
781224 TGCCAATGTGTTGATTCAAGGCCAACGACATTGGACTTAAAGAT-GATGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
*
781288 CAAGGCTAGCGATATTGGACTTAAAGACAGAGG
66 CAAGGCCAGCGATATTGGACTT---G--A-AGG
* * * * *
781321 TGCCAATATACTGATTCAAGGCCAACGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* *
781380 CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
66 CAAGGCCAGCGATATTGGAC-T-----TGAAGG
* * * * * * * * *
781413 TGCTAATATGCTAATTTAAGGCCAGCGATATTGGACTTAAAG----A--CGCCAATGTGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* *
781472 CAAGGCCAGCGACATTGGTCTT----G
66 CAAGGCCAGCGATATTGGACTTGAAGG
* * * * *
781495 TGCCGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGATGCTAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* *
781560 CAAGGCCAGCGATGTTGGACTTAAAGG
66 CAAGGCCAGCGATATTGGACTTGAAGG
* * * *
781587 TGCCAATGTGCTGATTTAAGGCCAGCGACATTGGTCTTAAAGACAAAGATGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
*
781652 CAAGGCC-GACGATATTGGACTTAAAGG
66 CAAGGCCAG-CGATATTGGACTTGAAGG
* * *
781679 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATACTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
781744 CAAGGCCAGCGATATTGGACTTGAAGG
66 CAAGGCCAGCGATATTGGACTTGAAGG
781771 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAAAAGGTGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT---AAAGGTGCCAATATGCTG
* * *
781836 ATTCAAGGCTAGCAATATTGGGCTTAGAAGG
63 ATTCAAGGCCAGCGATATTGGACTT-GAAGG
781867 GTTGCCACCG
Statistics
Matches: 633, Mismatches: 66, Indels: 92
0.80 0.08 0.12
Matches are distributed among these distances:
82 36 0.06
86 2 0.00
88 32 0.05
91 4 0.01
92 316 0.50
93 4 0.01
94 2 0.00
95 40 0.06
96 37 0.06
97 78 0.12
98 1 0.00
100 34 0.05
101 10 0.02
102 32 0.05
103 4 0.01
106 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTGAAGG
Found at i:781905 original size:33 final size:33
Alignment explanation
Indices: 781861--781923 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
781851 TATTGGGCTT
781861 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
*
781894 AGAATGGTTGCCACCGACTTGTGTGGGCTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTT
781924 CAAAAGGGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.16, C:0.19, G:0.37, T:0.29
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
Found at i:781996 original size:32 final size:33
Alignment explanation
Indices: 781931--782027 Score: 101
Period size: 32 Copynumber: 3.0 Consensus size: 33
781921 CTTCAAAAGG
* * *
781931 GGGTGCCACGAAGTTGTGGACTTAAAAGG-AAAA
1 GGGTGCCACGGAGTTGTGGGCTT-ATAGGAAAAA
*
781964 -GGTGCCACGGAGTTATGGGCTTATAGGAAAAA
1 GGGTGCCACGGAGTTGTGGGCTTATAGGAAAAA
* *
781996 GGGATGCCACGGAGGTGTGGGCTT-TTGGAAAA
1 GGG-TGCCACGGAGTTGTGGGCTTATAGGAAAA
782028 GGATGCACAG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
31 4 0.07
32 23 0.43
33 9 0.17
34 18 0.33
ACGTcount: A:0.30, C:0.12, G:0.37, T:0.21
Consensus pattern (33 bp):
GGGTGCCACGGAGTTGTGGGCTTATAGGAAAAA
Found at i:782028 original size:32 final size:32
Alignment explanation
Indices: 781957--782033 Score: 95
Period size: 34 Copynumber: 2.4 Consensus size: 32
781947 TGGACTTAAA
*
781957 AGGAAAAGG-TGCCACGGAGTTATGGGCTTAT
1 AGGAAAAGGATGCCACGGAGGTATGGGCTTAT
*
781988 AGGAAAAAGGGATGCCACGGAGGTGTGGGCTT-T
1 AGG-AAAA-GGATGCCACGGAGGTATGGGCTTAT
*
782021 TGGAAAAGGATGC
1 AGGAAAAGGATGC
782034 ACAGGAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 9 0.22
32 8 0.20
33 5 0.12
34 18 0.45
ACGTcount: A:0.30, C:0.12, G:0.39, T:0.19
Consensus pattern (32 bp):
AGGAAAAGGATGCCACGGAGGTATGGGCTTAT
Found at i:782079 original size:33 final size:33
Alignment explanation
Indices: 782037--782100 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
782027 AGGATGCACA
782037 GGAAAAAAGTGCCACGGAGTTGTGGACTTAACT
1 GGAAAAAAGTGCCACGGAGTTGTGGACTTAACT
* *
782070 GGAAAAAAGTGCCTCGGAGTTGTGGGCTTAA
1 GGAAAAAAGTGCCACGGAGTTGTGGACTTAA
782101 AAAAGAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (33 bp):
GGAAAAAAGTGCCACGGAGTTGTGGACTTAACT
Found at i:782184 original size:32 final size:31
Alignment explanation
Indices: 782108--782255 Score: 201
Period size: 32 Copynumber: 4.7 Consensus size: 31
782098 TAAAAAAGAA
*
782108 ATGCCACTAAGTCGTGGACTTTGG--GAACAG
1 ATGCCACTAAGTCGTGGAC-TTGGAAGAAAAG
*
782138 ATTGCCACTGAGTCGTGGACTTGGAAGAAAAGG
1 A-TGCCACTAAGTCGTGGACTTGGAAGAAAA-G
782171 ATGCCACTAAGTCGTGGACTTGGAAGAAAAAG
1 ATGCCACTAAGTCGTGGACTTGGAAG-AAAAG
782203 ATGCCACTAAGTCGTGGACTTGGAAGAAAATG
1 ATGCCACTAAGTCGTGGACTTGGAAGAAAA-G
* *
782235 ATGTCACTGAGTCGTGGACTT
1 ATGCCACTAAGTCGTGGACTT
782256 AAAAAAGAGA
Statistics
Matches: 107, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
30 5 0.05
31 21 0.20
32 75 0.70
33 6 0.06
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (31 bp):
ATGCCACTAAGTCGTGGACTTGGAAGAAAAG
Found at i:783508 original size:6 final size:6
Alignment explanation
Indices: 783497--783542 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
783487 GGTGTGTATT
* *
783497 TTTTTG TTTTTG TTTTTG -TTTT- TTTGTG TTATTG TTTTT- TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
783542 T
1 T
783543 GCTTGACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
5 12 0.36
6 21 0.64
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:783520 original size:22 final size:21
Alignment explanation
Indices: 783495--783540 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 21
783485 TTGGTGTGTA
783495 TTTTTTTGT-TT-TTGTTTTT
1 TTTTTTTGTGTTATTGTTTTT
783514 GTTTTTTTGTGTTATTGTTTTT
1 -TTTTTTTGTGTTATTGTTTTT
783536 TTTTT
1 TTTTT
783541 GTGCTTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 9 0.38
21 7 0.29
22 8 0.33
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.85
Consensus pattern (21 bp):
TTTTTTTGTGTTATTGTTTTT
Found at i:783531 original size:16 final size:16
Alignment explanation
Indices: 783480--783537 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
783470 CTCTCTTCCT
*
783480 TTTTTTTGGTGTGTATTT
1 TTTTTTT-GTGT-TATTG
* *
783498 TTTTGTTTTTGTTTTTG
1 TTTT-TTTGTGTTATTG
783515 TTTTTTTGTGTTATTG
1 TTTTTTTGTGTTATTG
783531 TTTTTTT
1 TTTTTTT
783538 TTTGTGCTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
16 17 0.50
17 7 0.21
18 7 0.21
19 3 0.09
ACGTcount: A:0.03, C:0.00, G:0.17, T:0.79
Consensus pattern (16 bp):
TTTTTTTGTGTTATTG
Found at i:788146 original size:476 final size:476
Alignment explanation
Indices: 787233--788360 Score: 1424
Period size: 476 Copynumber: 2.4 Consensus size: 476
787223 TTCTCATTAG
* * * * * * * *
787233 GATAAACTATCAATATCTTTTATCTTAATGAGGAGAATGCGTTTATCGTGCCTAATCATAAAGTG
1 GATAAAC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACTTAATCACAAAATG
* * * *
787298 AATGAAGATCATTACTAGAATCCAAGTTTGTCACATTTGACGCAC-ATGCTTAGACATTCCAAAA
65 AATGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGCACGA-ACTTAGACATTCCAAAA
787362 ATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGA
129 ATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGA
* * *
787427 CTATGTTTATGGTACCTTATCCTGAAAAGAATGGAGATAAGTATTACTATTCATGTTTGTCTTAT
194 CTATGTTTATGGTACCTTATCCTGAAAAGAATGGAGATAAGTATCACTATTCATGTTTATCCTAT
* * * * * *
787492 TTAGGAGATAAACTTTGATTTTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTTCGACACCAAAG
259 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTGTCTTGCGACACCAAAG
** * * * *
787557 AATCAATTTCATTTGTCCTAATGAAGGGAATGTGCTCTTGGTTCCCAATCTTGGAAAGAATGGAG
324 AATCAATGGCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTGAAAAGAATGGAG
*** ** * * * *
787622 ACTGTAACGGGAATCAATGCTTGCCTTATATAAGGGTAAAACTTTTATTTTATGGAAAATAGGGT
389 ACAACAACAAGAATCAATGCTTACCATATATAAGGGTAAAACTTTTATTTTAAGGAAAATAGGGC
* **** *
787687 AAATAAGTGTTTTTCATGCAAAA
454 AAAGAAACAATTTCCATGCAAAA
* * *
787710 GA-AAACAATCAATATCATTTATCCTAATAAGGAGAATGTTTTTGTAGTACTTAATCACAAAATG
1 GATAAAC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACTTAATCACAAAATG
787774 AATGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGCACGAACTTAGACATTCCAAAAA
65 AATGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGCACGAACTTAGACATTCCAAAAA
* * *
787839 TTAGCAGAAAGAAAGCTTTTCTTGTGAAACCAAAGCATCAATATTGTCTATCCTAATGAGAAGAC
130 TTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAC
* * *
787904 TATGTTTATGGTGCCTTATCTTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTATCCTATT
195 TATGTTTATGGTACCTTATCCTGAAAAGAATGGAGATAAGTATCACTATTCATGTTTATCCTATT
* * *
787969 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTGTCTTGCGACACTAAAGC
260 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTGTCTTGCGACACCAAAGA
* * * *
788034 ATCGATGGCATGTATTCTAGTAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
325 ATCAATGGCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* ** *
788099 CAACCACAAGAATTGATGCTTACCATAGT-TAAGGG-AAGAATTTTTATTTTAAGGAAAATAGGG
390 CAACAACAAGAATCAATGCTTACCATA-TATAAGGGTAA-AACTTTTATTTTAAGGAAAATAGGG
788162 CAAAGAAACAATTTCCATGCAAAA
453 CAAAGAAACAATTTCCATGCAAAA
* * *
788186 GATAATCATTAATATCATTTATCCTAATGAGGACG-ATGTGTTCATAGTACCTT-ATCACAAAAT
1 GATAAACATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTA-CTTAATCACAAAAT
* ** * * * **
788249 GAGTGAAGATCACAACTAGAA-TAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAA
64 GAATGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGCACGAACTTAGACATTCCAAAA
* ** * * * *
788313 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACTAACGCGTCAATATCGT
129 ATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGT
788361 GTACCCTTGC
Statistics
Matches: 558, Mismatches: 87, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
475 78 0.14
476 469 0.84
477 11 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
GATAAACATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACTTAATCACAAAATGA
ATGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGCACGAACTTAGACATTCCAAAAAT
TAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACT
ATGTTTATGGTACCTTATCCTGAAAAGAATGGAGATAAGTATCACTATTCATGTTTATCCTATTT
AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTGTCTTGCGACACCAAAGAA
TCAATGGCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
AACAACAAGAATCAATGCTTACCATATATAAGGGTAAAACTTTTATTTTAAGGAAAATAGGGCAA
AGAAACAATTTCCATGCAAAA
Found at i:790440 original size:475 final size:476
Alignment explanation
Indices: 788923--793447 Score: 4522
Period size: 476 Copynumber: 9.6 Consensus size: 476
788913 TCATTAGGAT
* * * * * * * *
788923 AAACTATCAATATCTTTTATCTTAATGAGGAGAATGCGTTTATCGTGCCTAATCATAAAGTGAAT
1 AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
788988 GAAGATCATTACTAGAATCCAAGTTTGTCACATTTGACGCAC-ATGCTTAGACATTCCAAAAATT
66 GAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGA-ACTTAGACTTTACAAAAATT
* *
789052 AGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTA
130 GGCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTA
* * *
789117 TGTTTATGGTACCTTATCCTGAAAAGAAT-GGAGATAAGTATTACTATTCATGTTTGTCTTATTT
195 TGTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * * * *
789181 AGGAGATAAACTTTGATTTTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTTCGACACCAAAGAA
260 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
789246 TCAATTTCATTTGTCCTAATGAAGGGAATGTGCTCTTGGTTCCCAATCTTGGAAAGAATGGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * *
789311 TGTAACGGGAATCAATGCTTGCCTTATATAAGGGTAAAACTTTTATTTTATGGAAAATAGGGCAA
390 TGTAACGAGAATCAATGCTTGCCTTATTTAAGGG-AAAACTTTTATTTTAAGGAAAATAGGGCAA
* * *
789376 ATAAGTGTTTTTCATGCAAAAGA
454 AGAAATGATTTTCATGCAAAAGA
* * * *
789399 AAACAATCAATATCATTTATCCTAATA-AGGAGAATGT-TGTTGTAGTACTTAATCACAAAATGA
1 AAACCATCAATATCATTTATCCTAA-AGAGGAGAATGTGT-TTATAGTGCCTAATCACAAAATGA
* * *
789462 ATGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGCACGAACTTAGACATTCCAAAAAT
64 ATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * *
789527 TAGCAGAAAGAAAGCTTTTCTTGTGAAACCAAAGCATCAATATTGTCTATCCTAATGAGAAGACT
129 TGGCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACT
* * *
789592 ATGTTTATGGTGCCTTATCTTGAAAAGAAT-GGAGATTAGTATGACTATTCATGTTTATCCTATT
194 ATGTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATT
* * * *
789656 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTGTCTTGCGACACTAAAGC
259 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * *
789721 ATCGATGGCATGTATTCTAGTAAAGGGAATGTGGTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
324 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* ** * ** * * * **
789786 CAGCCACAAGAATTGATGCTTACCATAGTTAAGGGAAGATTTTTTATTTTAAGGAAAATAGGGCA
389 CTGTAACGAGAATCAATGCTTGCCTTATTTAAGGGAA-AACTTTTATTTTAAGGAAAATAGGGCA
** *
789851 AAGAAACAATTTCCATGCAAAAGA
453 AAGAAATGATTTTCATGCAAAAGA
* * * * * * * *
789875 TAATCATTAATATCATTTATCCTAATGAGGACG-ATGTGTTCATAGTACCTTATCACAAAATGAG
1 AAACCATCAATATCATTTATCCTAAAGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAA
** * * *
789939 TGAAGATCACAACTAGAAT-AATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATT
65 TGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATT
** * * * * * * *
790003 GGTGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCGTCAATATCGTGTACCCTTATGTGAATACTA
130 GGCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTA
* * * * * * * *
790068 CGTTTATGGTGCCTAATCTTGAAAACAATACGA-ATTAGTATGACTATTTATGTTTGTATTTTTT
195 TGTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * * *
790132 AAGAGACAAACTTTAATTCTATCATAAACGGT-GAAAAAAAAGCTTTTCTCGCGACGCCAAAGCA
260 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * * *
790196 TTAATGTCATGTATTCTAATGACGAGAATGTGTTCTTGGATCCTAATCTTGAAAAGAATGGAGAT
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* *
790261 TGTAACGAGAATCGATGCTTGCCTTATTTAAGGGACAAACTTTTATTTTAAGGAAAATAAGGCAA
390 TGTAACGAGAATCAATGCTTGCCTTATTTAAGGGA-AAACTTTTATTTTAAGGAAAATAGGGCAA
* * *
790326 AGAAAAGATTTTCATACGAAAGA
454 AGAAATGATTTTCATGCAAAAGA
* *
790349 AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGATT
1 AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
** * * * * *
790414 TTAGGTCATTACTAGAATCCATGTTTGTCACATTTGAGGCATGAACTTAAACGTTCCAAAAATTG
66 GAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * *
790479 GTAAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTGTCTATCCTAATGAGAAGACTAT
131 GCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTAT
*
790544 GTTTATGGTGCCTTATCCTGAAAAGAAT----G----G-A--ACTATTCATGTTTGTCTTATTTG
196 GTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * * * * *
790598 GGGGGCAAATTTTGATTTTATAAAAAATAGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGAAT
261 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * * * *
790663 TAATTTAATGTGTCCTAATGAAAGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACT
326 CAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * *
790728 GT-ACCAGGAATCAATGCTTGCCTTATTTAAGGGTGAAACTTTT-TTTTATGGAAAATAGGGCAA
391 GTAACGA-GAATCAATGCTTGCCTTATTTAAGGG-AAAACTTTTATTTTAAGGAAAATAGGGCAA
*
790791 AGAAATGTTTTTCATGCAAAAGA
454 AGAAATGATTTTCATGCAAAAGA
** * * * * * * *
790814 AAATAATCAATATCATTTGT-CTTAAGAAGGAGAAGGTTTTTATAGTACTTAATGACAAAATGAA
1 AAACCATCAATATCATTTATCCTAAAG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
790878 TGAAGATCATTACTAGAATTCATGTTTGTCACATTTGAGGTATGAACTTAGACATTT-TAAAAAC
65 TGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGAC-TTTACAAAAAT
* * * *
790942 TGGCAGGAAGAAAGCTTTTCTTGCGAAACTAAAGCATCAATATTGTCTATCCTAATAAGAAGACT
129 TGGCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACT
* *
791007 ATGTTTATGGTGTCGTATCCTGAAAA-AACTA-GAGATTAGTATGACTATTCATGTTTGTCTTAT
194 ATGTTTATGGTGCCTTATCCTGAAAAGAA-TAGGAGATTAGTATGACTATTCATGTTTGTCTTAT
* * * *
791070 TTAAGAGATAAAC-TTGAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGATACCAAG
258 TTAAGAGACAAACTTTG-ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
791134 GCATCAACGTCATGTATCCTAATGAAGGGAATGTGTGCTTCGTTCCCAATCTTGAAAAGGATGGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
** * ** * * *
791199 GACTGCCACAAGAATCAATGCTTGCGATAATTAAGGGAAGAATTTTTATTTTAAGGAAAATCGGG
387 GACTGTAACGAGAATCAATGCTTGCCTTATTTAAGGGAA-AACTTTTATTTTAAGGAAAATAGGG
* * *
791264 CAAAGAATTGATTTCCATTCAAAAGA
451 CAAAGAAATGATTTTCATGCAAAAGA
* * * * * * * *
791290 TAATCATCGATGTCATTTATCC-AAATGAGGAGAGTGTGTTCATAGTGCCTAAACACAAAATAAA
1 AAACCATCAATATCATTTATCCTAAA-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* ** * *
791354 TGAAGATCATTACTGGAA-CCACATTTATCTCATTTGAGGCACGAA-TTAGACTTTACAAAAATT
65 TGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * * **
791417 AGTG-A-GAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAATATCGTGTACCCTTATTTGAAGAC
130 -G-GCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAC
* * * *
791480 TATGTTTATGGTGCCTAATCCTTG-AAAGAAT-GGGGATTAGAATGACTATTCATGTTTGTCTTC
193 TATGTTTATGGTGCCTTATCC-TGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTA
* * * *
791543 TTTAAGAGACGAACTTTGATTTTATCATAAATGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAA
257 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* *
791608 GCATCAATGTCATGTATCCTAATGACA-AGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGG
322 GCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
* ** * *
791672 AGACTGTAACGGGAATTGATGCTTGCCTTATATAAGGGAAAAACTTTTATTTTAAGGAAAATAAG
386 AGACTGTAACGAGAATCAATGCTTGCCTTATTTAAGGG-AAAACTTTTATTTTAAGGAAAATAGG
* * *
791737 GCAAACAAATGATTTTCATACGAAAGA
450 GCAAAGAAATGATTTTCATGCAAAAGA
* * * *
791764 AAACCATCAATATCATTTATCCTAAGGAGGAGAATGTCTTTATAGTGCCTAATAACACAATGAAT
1 AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * ** * * *
791829 GCAGGTCATTACTAGAATTAATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
66 GAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * ** *
791894 ACAGGAAGAAAGCTTTTCTTTTGAAACCAAAGCATCAATACCATCTATTGTAATGAGAAAACTAT
131 GCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTAT
* * * *
791959 ATTTATGGTGCCTTATCCTG-ATAGAATAGG-GTTTAGTATGACTACTCATGTTTGTCTTATTTA
196 GTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATTTA
** * * ** *
792022 A-AGTACAAACTTTGGGTCTATCAAAAATGGTGGAAAAAAAAGCTTGTCTTATGACACCAAGGCA
261 AGAG-ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * *
792086 TCAATGTCATGTATCTTAATGAAGGGAATGTGTCCTTAGTTCCCAATCTTGAAATGAATGCAGAA
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** ** * *
792151 TGTTACGAGAATCAACGTTTGTCTTGTTTAAGGGGTGAACTTTGCTTTTATGAAAAATAGGGCAA
390 TGTAACGAGAATCAATGCTTGCCTTATTTAA-GGGAAAACTTTTATTTTAAGGAAAATAGGGCAA
* *
792216 AGAAAAGATTTTCATCCAAAAGA
454 AGAAATGATTTTCATGCAAAAGA
** * * *
792239 AAACCATCAATATCATACATCCTAATGAGGAGAATGTGTTTAGT-GTGCCTAATCATAAAGTGAA
1 AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAA
* * * *
792303 TGAAGATTATTACTAGAATCCATGTTTGTCACATTTAAGGCACGAACTTAGACATTCCAAAAATT
65 TGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * ** *
792368 GGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGAATCAATATTATCTATCCTAAAGAGAAGACTA
130 GGCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTA
* * * * *
792433 TGCTTATCGTGCATTATCCTGAAAAGAAT-GGAGATAAGTATGACTATTCATGTTTGTCTGATTT
195 TGTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATTT
** * * * * * * *
792497 GGGAGACAAACTTTGATTTTATTAAAAATGGTGTAAAGAAAAGTTTTTCTTGCGACACGAGAGAA
260 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
792562 TCAATTTCATGTGTCCTAATGAAGGGAATGTGTTCATGGTTCCCAATCTTGGAAAGAATGGAAAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * *
792627 TGTTACAAGAATCAATACTTGCCTTATTTAAGGGTGAAACTTTTATTTTATGGAAAATAGGGCAA
390 TGTAACGAGAATCAATGCTTGCCTTATTTAAGGG-AAAACTTTTATTTTAAGGAAAATAGGGCAA
792692 AGAAATG-TTTTCCATGCAAAAGA
454 AGAAATGATTTT-CATGCAAAAGA
* * * * * * *
792715 AAACAATCAATATCATTTATCCTAATGACGAGAATGTTTTTGTAGTACCTAACCACAAAATGAAT
1 AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * ** *
792780 GCAGGTCATTACTAGAATCCATGTTTATTTCATTTGAGGCACGAACATAGACTTTACAAAAATTG
66 GAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * *
792845 ACACGAAGAAAGCCTTTCTTACGAAACCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTTT
131 GCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTAT
* * *
792910 ATTTATGGTG--TTATCCTG-AAAGAATAGG-GCTTAGTATGACTATT-ACTATTTGTCTTATTT
196 GTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCA-TGTTTGTCTTATTT
* * * * *
792970 ATG-G------TGTG--T-TATC-------CT-GAAAAAAAAGCTTTTCTTGCGACACGAAAGCA
260 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
793017 TTAATGCCATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
** * * ** * *****
793082 TGTTGCGAGAATAAATG-TTTCTCTTGCTTAAGGG---A----TA----AA-GAGAAT-GTTTTT
390 TGTAACGAGAATCAATGCTTGC-CTTATTTAAGGGAAAACTTTTATTTTAAGGAAAATAGGGCAA
** * *
793133 A-AAATG--CCTAATCCCAAAATGA
454 AGAAATGATTTTCAT-GCAAAA-GA
** ** * * * * *
793155 GGAGAATGATTTTATAGTGC-CTAATCCCAAAATGAGGAGAATGTTTTTATAGTGCCTAATCCCA
1 --A-AACCA-TCAATA-T-CATTTAT-CCTAAA-GAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * * *
793219 AAATGAATGAAGATCATTACTACAATCCAAGTTTGT-ATTATTTCAGGCACGAACATAGATTTTA
58 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCA-CATTTGAGGCACGAACTTAGACTTTA
* * * * * ** * *
793283 CAAAAATTGGTAAGAAGAAAGCCTTTCTTGTGAAAGCAAAGTATCAATATTATGTATCCTAACGA
122 CAAAAATTGGCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGA
* * * *
793348 GAAGACTACGTTTGTGGTGCCTTACCCTGAAAAGAAAAGG-GATTAGTATGACT-TTCATGTTTG
187 GAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTG
* *
793411 TCTTATTTATGAGATAAACTTTGATTCTATCATAAAA
252 TCTTATTTAAGAGACAAACTTTGATTCTATCA-AAAA
793448 GATGGAATCA
Statistics
Matches: 3331, Mismatches: 625, Indels: 197
0.80 0.15 0.05
Matches are distributed among these distances:
438 2 0.00
439 6 0.00
440 7 0.00
441 2 0.00
442 6 0.00
443 4 0.00
444 4 0.00
445 4 0.00
446 5 0.00
447 152 0.05
449 25 0.01
450 23 0.01
451 1 0.00
454 3 0.00
455 106 0.03
456 4 0.00
458 1 0.00
459 4 0.00
463 3 0.00
464 8 0.00
465 265 0.08
466 121 0.04
467 1 0.00
468 2 0.00
472 3 0.00
473 39 0.01
474 590 0.18
475 900 0.27
476 1033 0.31
477 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
AAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTG
GCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTAT
GTTTATGGTGCCTTATCCTGAAAAGAATAGGAGATTAGTATGACTATTCATGTTTGTCTTATTTA
AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
CAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
GTAACGAGAATCAATGCTTGCCTTATTTAAGGGAAAACTTTTATTTTAAGGAAAATAGGGCAAAG
AAATGATTTTCATGCAAAAGA
Found at i:793168 original size:35 final size:35
Alignment explanation
Indices: 793121--793224 Score: 181
Period size: 35 Copynumber: 3.0 Consensus size: 35
793111 AAGGGATAAA
* *
793121 GAGAATGTTTTTAAAATGCCTAATCCCAAAATGAG
1 GAGAATGTTTTTATAGTGCCTAATCCCAAAATGAG
*
793156 GAGAATGATTTTATAGTGCCTAATCCCAAAATGAG
1 GAGAATGTTTTTATAGTGCCTAATCCCAAAATGAG
793191 GAGAATGTTTTTATAGTGCCTAATCCCAAAATGA
1 GAGAATGTTTTTATAGTGCCTAATCCCAAAATGA
793225 ATGAAGATCA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (35 bp):
GAGAATGTTTTTATAGTGCCTAATCCCAAAATGAG
Found at i:793606 original size:305 final size:306
Alignment explanation
Indices: 793185--793742 Score: 798
Period size: 305 Copynumber: 1.8 Consensus size: 306
793175 CTAATCCCAA
** *
793185 AATGAGGAGAATGTTTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTACAATCCAAG
1 AATGAGGAGAATGTTTTTATAGTGCCTAATCAAAAAAAGAATGAAGATCATTACTACAATCCAAG
* * **
793250 TTTGTATTATTTCAGGCACGAACATAGATTTTACAAAAATTGGTAAGAAGAAAGCCTTTCTTGTG
66 TTTGTATTATTTCAGGCACGAACATAGATTTTACAAAAATTGGCAAGAAGAAAGCCCTTCTTGCA
* * * *
793315 AAAGCAAAGTATCAATATTATGTATCCTAACGAGAAGACTACGTTTGTGGTGCCTTACCCTGAAA
131 AAAGCAAAGTATCAATATCATCTATCCTAACGAGAAGACTACGTTTATGGTACCTTACCCTGAAA
* * ** * *
793380 AGAAAAGGGATTAGTATGA-CTTTCATGTTTGTCTTATTTATGAGATAAACTTTGATTCTATCAT
196 AGAAAAGGGATTAGTATGACCATTAATGTTCATCTTATTTAAGAGACAAACTTTGATTCTATCAT
793444 AAAAGATGGAATCATAAACTTTGATTCTATCAATATCATTTATCCT
261 AAAAGATGGAATCATAAACTTTGATTCTATCAATATCATTTATCCT
* * *
793490 AATGAGGAGAAT-TTGTTTATAGTGCCTAATCAAAAAAAGAATGAAGATCTTTACTAGAATCCAT
1 AATGAGGAGAATGTT-TTTATAGTGCCTAATCAAAAAAAGAATGAAGATCATTACTACAATCCAA
* * * *
793554 GTTTGTCTTATTTGAGGTACGAAC-TCAGATTTTACAAAAATTGGCGAGAAGAAAGCCCTTCTTG
65 GTTTGTATTATTTCAGGCACGAACAT-AGATTTTACAAAAATTGGCAAGAAGAAAGCCCTTCTTG
* * * * *
793618 CAAAATCAGAGTATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTACCTTATCCTGA
129 CAAAAGCAAAGTATCAATATCATCTATCCTAACGAGAAGACTACGTTTATGGTACCTTACCCTGA
**
793683 AAAGAATGGGGATTAGTATGACCATTAATGTTCATCTTATTTAAGAGACAAACTTTGATT
194 AAAGAAAAGGGATTAGTATGACCATTAATGTTCATCTTATTTAAGAGACAAACTTTGATT
793743 TTTTTGAAAA
Statistics
Matches: 219, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
304 3 0.01
305 184 0.84
306 32 0.15
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (306 bp):
AATGAGGAGAATGTTTTTATAGTGCCTAATCAAAAAAAGAATGAAGATCATTACTACAATCCAAG
TTTGTATTATTTCAGGCACGAACATAGATTTTACAAAAATTGGCAAGAAGAAAGCCCTTCTTGCA
AAAGCAAAGTATCAATATCATCTATCCTAACGAGAAGACTACGTTTATGGTACCTTACCCTGAAA
AGAAAAGGGATTAGTATGACCATTAATGTTCATCTTATTTAAGAGACAAACTTTGATTCTATCAT
AAAAGATGGAATCATAAACTTTGATTCTATCAATATCATTTATCCT
Found at i:794866 original size:473 final size:474
Alignment explanation
Indices: 793472--797737 Score: 4350
Period size: 473 Copynumber: 9.0 Consensus size: 474
793462 CTTTGATTCT
* *
793472 ATCAATATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCTAATCA-AAAAAAGAATGAAG
1 ATCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATA-AATGAAG
* * * * * * *
793536 ATCTTTACTAGAATCCATGTTTGTCTTATTTGAGGTACGAACTCAGATTTTACAAAAATTGGCGA
64 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGG
* * * * * *
793601 GAAGAAAGCCCTTCTTGCAAAATCAGAGTATCAATATCATCTATCCTAATGAGAAGACTATGTTT
129 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTT
* * * * **
793666 ATGGTACCTTATCCTGAAAAGAATGGGGATTAGTATGACCATTAATGTTCATCTTATTTAAGAGA
194 ATGGTGCCTAATCCTG-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * * *
793731 CAAACTTTGATTTTTTTGAAAAATGGTGGAAAGAAAACCTTTTCCTACGACACCAAAGCATTAAT
258 CAAACTTTGA-TTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
* * * * * *
793796 GTCATGCATTCGAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAACGAAGACTGTCA
322 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCA
* * * *
793861 CGAGAATCAATGGTTGTCATATTTAGGGGATGAATTTTTATTTTAAGGAAAATC-GAGCAAAGAA
387 CGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAG-GCAAAGAA
** * *
793925 AAGATTTCGTTGCAAAACATAATC
451 AAGATTTCCATGCAAAAGAAAATC
* * *
793949 ATCAATATTATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
1 ATCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * * ** * * * *
794014 TTATTACTAGAATCCATTTTTGTCTCATTTAAGGCCCGAACTTACACTTTGCAAAAATTAGTGGG
65 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGGG
* * * * * *
794079 AGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATTGTCCATCC---T-AGAAGAATACGCTTA
130 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTA
* * * * *
794140 TGGTGCCTAATCCTAGAAGGAATGGGGATTAGTACGATTATTCGTGTTTATCTTATTTAAGAGAC
195 TGGTGCCTAATCCT-GAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
794205 AAACTTTAATTCTATCAAAAACGG-GGGAA-AAAACCTTTTCTTACGACGCCAAAGCTTCAATAT
259 AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGT
** * * * * ** ** *
794268 CATAAATGCTAATAAAGGGAATGTGTTCTTGATTCCCAATCTTGAAATGAACAGAGACTCACATG
324 CATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCACG
* ** * *
794333 AGAGTCGAACCTTGTCATGTTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGAAAAG
389 AGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGAAAAG
*
794398 ATTTCCATGCAAAATAAAATC
454 ATTTCCATGCAAAAGAAAATC
* * * *
794419 ATCAATATCATTTATCTTATGGAGGAGAATTTGATCATAGTGCCTAATCACAAAATAAATGAAGA
1 ATCAATATCATTTATCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * *
794484 TCATTACTAGAA-CCAAGTTTATCTCATTTGAGGCATGAACTTAGACTTTAC-AACATTGGCGGG
65 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGGG
* * * ** * *
794547 AAGAAATCCTTTCTTGCGAAACCAAAGCATCAGTATCATCTGCCCTAATGAGATGACTATGTCTA
130 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTA
* * * * *
794612 CGGTCCCTAATCCTGAAAGAATGGGGATTAGTATGACTCTTCGTGTTTGTCTTATTTAAGAGATA
195 TGGTGCCTAATCCTGAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
794677 AACTTTGATTCTATCAAAAATGGGGGAAAGAAAACCTTTTCTTGTGACGCCAAAGCATCAATGAC
260 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTC
* * *
794742 AAGTATCCTAATGAATGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTCACGA
325 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCACGA
* * *
794807 GAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAAGAAAATCAAGCAAAGAAAAGG
390 GAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGAAAAGA
*
794872 TTTCCTTGCAAAAGATAAA-C
455 TTTCCATGCAAAAGA-AAATC
* * *
794892 ATTC-ATATCATTTATCCTAATAAGGAGAATGTTTTTATATTGCCTAATCACAAAATAAATGAAG
1 A-TCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAG
* * * *
794956 ATCATTACTAGAATCCATGTTTGACTCATTCGAGGCATGAACTTAGACTATACAAAAATTGGCAG
64 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGG
* * * * *
795021 GAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCCTGTGTCCTAATGAGAAAACTATGTTT
129 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTT
* * ** * * *
795086 CTGGTCCCTTGTCCTGAAAAGAATGGAGACTAGTATGACTATTCGTGTTTGTCTTATTTAAGAGA
194 ATGGTGCCTAATCCTG-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * ** ** * * *
795151 TAAACTTTGGTCCTATCAAAAGTAATGGAAA-AAATGCTTTGCTTGTGACACCAAAGCTTCAATG
258 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
795215 TCATGTATCCTAAAGAAAGGAATGTGTTATTGGTTCCCAATCTTGAAAAGAATAGAAACTGTTAT
323 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCAC
* * * *
795280 GAAAAACGATGCTTATCATATTTAAAGGATGAATTTTTATTTTAAGGAAAAT-TGAGCAAAG-AA
388 GAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAG-GCAAAGAAA
*
795343 AGA-TTCCTATGCAAAAGATAATC
452 AGATTTCC-ATGCAAAAGAAAATC
* * * * * *
795366 GTCAGTATCATTTAACCTAATAAGGGGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
1 ATCAATATCATTT-ATCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * * * * *
795431 TCTTTACTAGAA-CCTTGTTTGTCTCATTTGAGGCACGAACTTACACTTTGCAAAAATTGGTC-A
65 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-CGG
* * * * * *
795494 GAATAAATCCTTTCTTGCGAATA-CAAAGCATCAGTATCGTTTATCTTATAGGA-AAGACTATGT
129 GAAGAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTCTATCCTA-ATGAGAAGACTATGT
* *
795557 TTATGGTGCTTAATCCTGAAAAGAAT-GGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGA
192 TTATGGTGCCTAATCCTG-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * * * * * *
795621 GACAAACTTTGAATT-TATCATAAACGATGGAAAGAAAAGCTTTTCTTGCGATACCAAAACCTTA
256 GACAAACTTTG-ATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCA
* * * *
795685 ATGAT-ATGTATCCTAAGGAAGGGTATGTGTTCTTGGTTCCCAATCATGAAAAGAAGGGAG-CTT
320 ATG-TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC-T
* * * * * * * * * *
795748 GTTACGGGAATCAATGTTTGTCTTGTTTTAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAA
383 GTCACGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCA-GGCAA
* ** * * *
795812 AGAAATGATTTTAATGGAAAATAAAATTA
447 AGAAAAGATTTCCATGCAAAAGAAAA-TC
* * *
795841 AT-AATAGCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
1 ATCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * * * * * ** *
795905 TCATTACTAGAATCCCTATTTGTCTAATTTGAGGCCTGAACTTACACTTCATGAAAATTGGTGGG
65 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGGG
* ** * *
795970 AAGAAAGCCTTTCTCGTAAAACCAAAGCATCAATATTGTCTATCCTAATAAGAAGACTATGTTTA
130 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTA
**
796035 TGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
195 TGGTGCCTAATCC-TGAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
*
796100 AAACTTTGATTCTATCAAAAATGAG-GGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATG
259 AAACTTTGATTCTATCAAAAATG-GTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
* * * * *
796164 --A-GTATCCTAATCAAGGGAATGTGTTCTTGGTTCCCAATATTGAAAAGAATGGAGATTGCCAT
323 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCAC
* * *
796226 GAGAATCGATGCTTATCATATTTTAGGGATGAATTTTTATTTTAAGGAAAATCGGGTAAAGAAAA
388 GAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGAAAA
* * *
796291 GATTTCCCTACAAAA-AAGATC
453 GATTTCCATGCAAAAGAAAATC
* ** *
796312 ATCAATATTATTTATCCTAGGGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
1 ATCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * * *
796377 TCATTACTAGAA--CAAGCTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGG
65 TCATTACTAGAATCCATG-TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGG
** * ** * * *
796440 GTTGAAAGCCTTTCTTTC--TTCTAAAGCATCAATATCGTGTATCCTTATGTAG-AGACTATGTT
129 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATG-AGAAGACTATGTT
* *
796502 TATGGTGCCT-ATCCTGAAAGGAGTGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAG
193 TATGGTGCCTAATCCTGAAA-GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * ** * * *
796566 ACAAACTTTGAATT-TATTAAAAATGGTGGAAAAAAAAGATTTTCTTGCAACACAAAAGTATCAA
257 ACAAACTTTG-ATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
** * * * * * * *
796630 TGTCGGGCATCTTGATGAAGGGAATGTGTTCTTCGTTCCTAATGTTGAAAA-AATTGGAGACTAT
321 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTGT
** * * * * *
796694 TGCGAGAATC-AGTGTTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGGAAAT-AGGGCAAA
385 CACGAGAATCGA-TGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCA-GGCAAA
* *
796757 GAAAAGATTTTCATGCAAAAGAAAATT
448 GAAAAGATTTCCATGCAAAAGAAAATC
* ** * ** * *
796784 ATCAATATCGTTTATCCTAAAAAAGAGAATGCATTTATAGTGCCTAATCACAAAATGAGTGAAGA
1 ATCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * * * * * * * *
796849 ACATTACTAGAATCAATATTTGTCTCATTTGA-GAATCAAACTTACATTTTACAAAAATTGGTGA
65 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAT-GAACTTAGACTTTACAAAAATTGGCGG
* * * * * *
796913 GACGAAAGCCTTTCTTGCAAAACTAAAGCAACAAT-TCTGACTATCCTAATAAGAAGACTATGTT
129 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-GTCTATCCTAATGAGAAGACTATGTT
* *
796977 TATGGTGCCTAATCTTGAAATGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAG
193 TATGGTGCCTAATCCTGAAA-GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * *
797042 ACAAATTTTGATTCTATCAAAAACGGTAGAAAGAGAACCTTTTCTTGCGACACCAAAGCATCAAT
257 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
* * *
797107 GTCATGTATCCTAATGAAGGGATTGTGTTCTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTAA
322 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCA
* * * * ** * * *
797172 C-AGGAATCGATGCGT-GCTTTATTGAAGGGACAAACTTTTAGTTTATGGAAAAT-AGCGCAAAG
387 CGA-GAATCGATGCTTATC-ATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAG-GCAAAG
797234 AAAAGATTTCCATGCAAAAGATAATCAATC
449 AAAAGATTTCCATGCAAAAG--AA--AATC
* * * * *
797264 ATCAACATCATTTATCCTAATGAGGAGAATGTTTTTGTAGTGTCTAATCACAAAATGAATGAAGA
1 ATCAATATCATTTAT-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* * * * * * * * * *
797329 TAATTACTGGAATCCATGTTTATCCCATTT-ATAGCATGAATTTAGA-TGTTCCAATAATTAGCC
65 TCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCATGAACTTAGACT-TTACAAAAATTGGCG
* * * * ** * * *
797392 GGAAGAAAGCCATTATTACGAAACCTAAGCATCAGCATCGTCCATCCAAATGAGAAGACTATGCT
128 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTT
* * * * * * **
797457 TATGGTCCCTTATCTTGAAAAGAGTGGAGATTAGCATGACTATTTGTGTTTGTCTTATTTAAGAG
193 TATGGTGCCTAATCCTG-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * * * *
797522 ACAAACTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTTCTTACGACGCCAAAGCTTCAAT
257 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
* ** * * *
797587 GTCATGTGTCCTAATGAA-AAAATGTGTTCTTGGTTCCGAATCCT-AAAAGGAATGGAGATTGTC
322 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-GAATGGAGACTGTC
* * * *
797650 ACAAGAATCCATGCTT-TCCATATTTAAGGGATAAATTTTTATTTTAAGGAAAATTAGGCAAAGA
386 ACGAGAATCGATGCTTAT-CATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGA
* *
797714 AAAGATTTTCATGTAAAAGAAAAT
450 AAAGATTTCCATGCAAAAGAAAAT
797738 TGAAAGCTTA
Statistics
Matches: 3128, Mismatches: 578, Indels: 168
0.81 0.15 0.04
Matches are distributed among these distances:
467 4 0.00
468 144 0.05
469 81 0.03
470 225 0.07
471 237 0.08
472 237 0.08
473 695 0.22
474 216 0.07
475 380 0.12
476 373 0.12
477 147 0.05
478 9 0.00
479 100 0.03
480 272 0.09
481 8 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
ATCAATATCATTTATCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGAT
CATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGGGA
AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTAT
GGTGCCTAATCCTGAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCA
TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCACGAG
AATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATC
Found at i:795716 original size:948 final size:945
Alignment explanation
Indices: 793472--797733 Score: 4445
Period size: 948 Copynumber: 4.5 Consensus size: 945
793462 CTTTGATTCT
* * *
793472 ATCAATATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCTAATCA-AAAAAAGAATGAAG
1 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATA-AATGAAG
* * * * *
793536 ATCTTTACTAGAATCCATGTTTGTCTTATTTGAGGTACGAACTCAGATTTTACAAAAATTGGCGA
65 ATCATTACTAGAA-CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCG-
* * * * * * *
793601 GAAGAAAGCCCTTCTTGCAAAATCAGAGTATCAATATCATCTATCCTAATGAGAAGACTATGTTT
128 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCGTCTATCCTAATGAGAAGACTATGTTT
* * **
793666 ATGGTACCTTATCCTGAAAAGAATGGGGATTAGTATGACCATTAATGTTCATCTTATTTAAGAGA
193 ATGGT-CCTTATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * * * *
793731 CAAACTTTGATTTTTTTGAAAAATGGTGGAAAGAAAACCTTTTCCTACGACACCAAAGCATTAAT
257 CAAACTTTGA-ATTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACATTAAT
* * * * * *
793796 GTCATGCATTCGAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAACGAAGACTGTCA
321 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCA
* * * *
793861 CGAGAATCAATGGTTGTCATATTTAGGGGATGAATTTTTATTTTAAGGAAAATCGAGCAAAGAAA
386 CGAGAATCAATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATAG-GCAAAGAAA
** * * *
793926 AGATTTCGTTGCAAAACATAATCA-TCAATATTATTTATCCTAA-AGAGGAGAATGTGTTTATAG
450 AGATTTCCATGCAAAAGATAA-AATTCAATATCATTTATCCTAATA-AGGAGAATGTGTTTATAG
* * * **
793989 TGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATTTTTGTCTCATTTAAGGCCCGAA
513 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCATGAA
* * * *
794054 CTTACACTTTGCAAAAATTAGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-TGT
578 CTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCTGT
* * * * * *
794118 CCATCCT-AGAAG--AA-TACGCTTATGGTGCCTAATCCT-AGAAGGAATGGGGATTAGTACGAT
643 --ATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGAC
* * * *
794178 TATTCGTGTTTATCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACGGGGGAAA-AAACCTT
705 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAACCTT
* * * * ** * *
794242 TTCTTACGACGCCAAAGCTTCAATATCATAAATGCTAATA-AAGGGAATGTGTTCTTGATTCCCA
770 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGAATGTGTTCTTGGTTCCCA
* * * * ** * *
794306 ATCTTGAAATGAACAGAGACTCACATGAGAGTCGAACCTTGTCATGTTTAAGGGATGAATTTTTA
834 ATCTTGAAAAGAATAGAGACT-GCATGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTA
* * *
794371 TTTTAAGGAAAA-TCAGGCAAAGAAAAGATTTCCATGCAAAATAAAATC
898 TTTTAAGGAAAATTGA-GCAAAGAAAAGATTTCCATGCAAAAGATAATC
* * *
794419 ATCAATATCATTTAT-CTTATGGAGGAGAATTTGATCATAGTGCCTAATCACAAAATAAATGAAG
1 ATCAATATCATTTATCCTAAT-GAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAG
* * * *
794483 ATCATTACTAGAACCAAGTTTATCTCATTTGAGGCATGAACTTAGACTTTAC-AACATTGGCGGG
65 ATCATTACTAGAACCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGC-GG
* * ** * *
794547 AAGAAATCCTTTCTTGCGAAACCAAAGCATCAGTATCATCTGCCCTAATGAGATGACTATGTCTA
129 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCGTCTATCCTAATGAGAAGACTATGTTTA
* * * * *
794612 CGGTCCCTAATCCTG-AAAGAATGGGGATTAGTATGACTCTTCGTGTTTGTCTTATTTAAGAGAT
194 TGGT-CCTTATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * *
794676 AAACTTTG-ATTCTATCAAAAATGGGGGAAAGAAAACCTTTTCTTGTGACGCCAAAGCATCAATG
258 AAACTTTGAATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACATTAATG
* * * *
794740 ACAAGTATCCTAATGAATGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTCAC
322 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCAC
* * *
794805 GAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAAGAAAATCAAGCAAAGAAAA
387 GAGAATCAATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAAT-AGGCAAAGAAAA
* * * *
794870 GGTTTCCTTGCAAAAGATAAACATTC-ATATCATTTATCCTAATAAGGAGAATGTTTTTATATTG
451 GATTTCCATGCAAAAGATAAA-ATTCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
* * * *
794934 CCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGACTCATTCGAGGCATGAACT
515 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCATGAACT
* * ** ** *
794999 TAGACTATACAAAAATTGGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCCTGTG
580 TACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-CTGTA
* * * ** * *
795064 TCCTAATGAGAAAACTATGTTTCTGGTCCCTTGTCCTGAAAAGAATGGAGACTAGTATGACTATT
644 TCCTAATAAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * * *** * * *
795129 CGTGTTTGTCTTATTTAAGAGATAAACTTTGGTCCTATCAAAAGTAATGGAAA-AAATGCTTTGC
709 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAA-CCTTTTC
* * * *
795193 TTGTGACACCAAAGCTTCAATGTCATGTATCCTAAAGAAAGGAATGTGTTATTGGTTCCCAATCT
773 TTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCT
* * * * *
795258 TGAAAAGAATAGAAACTGTTATGAAAAACGATGCTTATCATATTTAAAGGATGAATTTTTATTTT
838 TGAAAAGAATAGAGACTG-CATGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTT
795323 AAGGAAAATTGAGCAAAG-AAAGA-TTCCTATGCAAAAGATAATC
902 AAGGAAAATTGAGCAAAGAAAAGATTTCC-ATGCAAAAGATAATC
* * * * *
795366 GTCAGTATCATTTAACCTAATAAGGGGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
1 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
* * * * *
795431 TCTTTACTAGAACCTTGTTTGTCTCATTTGAGGCACGAACTTACACTTTGCAAAAATTGGTCAGA
66 TCATTACTAGAACCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-CGGA
* * * * *
795496 ATAAATCCTTTCTTGCGAATA-CAAAGCATCAGTATCGTTTATCTTATAGGA-AAGACTATGTTT
130 AGAAAGCCTTTCTTGCGAA-ACCAAAGCATCAGTATCGTCTATCCTA-ATGAGAAGACTATGTTT
* *
795559 ATGGTGCTTAATCCTGAAAAGAAT-GGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGA
193 ATGGTCCTT-ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * *
795623 CAAACTTTGAATTTATCATAAACGATGGAAAGAAAAGCTTTTCTTGCGATACCAAAACCTTAATG
257 CAAACTTTGAATTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACATTAATG
* * * * *
795688 AT-ATGTATCCTAAGGAAGGGTATGTGTTCTTGGTTCCCAATCATGAAAAGAAGGGAG-CTTGTT
322 -TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC-TGTC
* * * * * * * *
795751 ACGGGAATCAATGTTTGTCTTGTTTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
385 ACGAGAATCAATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATA-GGCAAAGAA
* ** * **
795816 ATGATTTTAATG-GAAA-ATAAAATT-AATAATAGCATTTATCCTAATGCGGAGAATGTGTTTAT
449 AAGATTTCCATGCAAAAGATAAAATTCAAT-AT--CATTTATCCTAATAAGGAGAATGTGTTTAT
* * *
795878 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCTAATTTGAGGCCTG
511 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCATG
* ** * *
795943 AACTTACACTTCATGAAAATTGGTGGGAAGAAAGCCTTTCTCGTAAAACCAAAGCATCAATAT-T
576 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCT
* **
796007 GTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGA
641 G--TATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
*
796072 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGAGGGAAAGAAAACC
704 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAGGGAAAG-AAACC
* **
796137 TTTTCTTGCGATACCAAAGCATCAATG--A-GTATCCTAATCAAGGGAATGTGTTCTTGGTTCCC
768 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCC
* * * *
796199 AATATTGAAAAGAATGGAGATTGCCATGAGAATCGATGCTTATCATATTTTAGGGATGAATTTTT
833 AATCTTGAAAAGAATAGAGACTG-CATGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTT
* * * * *
796264 ATTTTAAGGAAAATCGGGTAAAGAAAAGATTTCCCTACAAAA-A-AGATC
897 ATTTTAAGGAAAATTGAGCAAAGAAAAGATTTCCATGCAAAAGATA-ATC
* **
796312 ATCAATATTATTTATCCTAGGGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
1 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
* * *
796377 TCATTACTAGAA-CAAGCTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGGG
66 TCATTACTAGAACCATG-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-CGG
** * ** * * * *
796441 TTGAAAGCCTTTCTTTC--TTCTAAAGCATCAATATCGTGTATCCTTATGTAG-AGACTATGTTT
129 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCGTCTATCCTAATG-AGAAGACTATGTTT
* * *
796503 ATGGTGCC-TATCCTGAAAGGAGTGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGA
193 ATGGT-CCTTATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * * *
796567 CAAACTTTGAATTTATTAAAAATGGTGGAAAAAAAAGATTTTCTTGCAACA-CAAAAGTATCAAT
257 CAAACTTTGAATTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAA-CATTAAT
** * * * * * * * *
796631 GTCGGGCATCTTGATGAAGGGAATGTGTTCTTCGTTCCTAATGTTGAAAA-AATTGGAGACTATT
321 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTGTC
* * * * * * *
796695 GCGAGAATCAGTGTTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGGAAATAGGGCAAAGAA
385 ACGAGAATCAATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATA-GGCAAAGAA
* * * * * **
796760 AAGATTTTCATGCAAAAGA-AAATTATCAATATCGTTTATCCTAAAAAAGAGAATGCATTTATAG
449 AAGATTTCCATGCAAAAGATAAAAT-TCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAG
* * * * *
796824 TGCCTAATCACAAAATGAGTGAAGAACATTACTAGAATCAATATTTGTCTCATTTGA-GAATCAA
513 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCAT-GA
* * * * *
796888 ACTTACATTTTACAAAAATTGGTGAGACGAAAGCCTTTCTTGCAAAACTAAAGCAACAAT-TCTG
577 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCTG
* * *
796952 ACTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCTTGAAATGAATGGGGATTAGTATGAC
642 --TATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * *
797017 TATTCATGTTTGTCTTATTTAAAAGACAAATTTTGATTCTATCAAAAACG-GTAGAAAGAGAACC
705 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAG-GGAAAGA-AACC
* *
797081 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTCTTGGTTCCC
768 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCC
* * * ** * * * * ** *
797146 AATCTTGAAAGGAATGGAGACTGTAACAGGAATCGATGCGT-GCTTTATTGAAGGGACAAACTTT
833 AATCTTGAAAAGAATAGAGACTGCATGA-GAATCGATGCTTATC-ATATTTAAGGGATGAATTTT
* * * *
797210 TAGTTTATGGAAAATAGCGCAAAGAAAAGATTTCCATGCAAAAGATAATCAATC
896 TATTTTAAGGAAAATTGAGCAAAGAAAAGATTTCCATGCAAAAG---AT-AATC
* * ** * *
797264 ATCAACATCATTTATCCTAATGAGGAGAATGTTTTTGTAGTGTCTAATCACAAAATGAATGAAGA
1 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
* * * * * * * * * *
797329 TAATTACTGGAATCCATGTTTATCCCATTT-ATAGCATGAATTTAGA-TGTTCCAATAATTAGCC
66 TCATTACTAGAA-CCATGTTTGTCTCATTTGA-GGCACGAACTTAGACT-TTACAAAAATT-GGC
* * * * * * * *
797392 GGAAGAAAGCCATTATTACGAAACCTAAGCATCAGCATCGTCCATCCAAATGAGAAGACTATGCT
127 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCGTCTATCCTAATGAGAAGACTATGTT
* * * * **
797457 TATGGTCCCTTATCTTGAAAAGAGTGGAGATTAGCATGACTATTTGTGTTTGTCTTATTTAAGAG
192 TATGGT-CCTTATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * * *
797522 ACAAACTTTG-ATTCTAACAAAAATGGTGTAAAGAAAAGCTTTTCTTACGACGCCAAAGC-TTCA
256 ACAAACTTTGAATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACATT-A
* ** * * *
797585 ATGTCATGTGTCCTAATGAA-AAAATGTGTTCTTGGTTCCGAATCCT-AAAAGGAATGGAGATTG
319 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-GAATGGAGACTG
* * *
797648 TCACAAGAATCCATGCTT-TCCATATTTAAGGGATAAATTTTTATTTTAAGGAAAATTAGGCAAA
383 TCACGAGAATCAATGCTTAT-CATATTTAAGGGATGAATTTTTATTTTAAGGAAAA-TAGGCAAA
* *
797712 GAAAAGATTTTCATGTAAAAGA
446 GAAAAGATTTCCATGCAAAAGA
797734 AAATTGAAAG
Statistics
Matches: 2752, Mismatches: 476, Indels: 166
0.81 0.14 0.05
Matches are distributed among these distances:
942 2 0.00
943 346 0.13
944 563 0.20
945 95 0.03
946 291 0.11
947 394 0.14
948 640 0.23
949 41 0.01
950 3 0.00
951 1 0.00
952 71 0.03
953 45 0.02
954 11 0.00
955 138 0.05
956 107 0.04
957 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (945 bp):
ATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGA
TCATTACTAGAACCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCGGAA
GAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCGTCTATCCTAATGAGAAGACTATGTTTATG
GTCCTTATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGAATTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACATTAATGTCAT
GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTCACGAGA
ATCAATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATAGGCAAAGAAAAGATTT
CCATGCAAAAGATAAAATTCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCATGAACTTACACT
TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCTGTATCCTAAT
AAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAACCTTTTCTTGCGACA
CCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
ATAGAGACTGCATGAGAATCGATGCTTATCATATTTAAGGGATGAATTTTTATTTTAAGGAAAAT
TGAGCAAAGAAAAGATTTCCATGCAAAAGATAATC
Found at i:798507 original size:13 final size:13
Alignment explanation
Indices: 798489--798514 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
798479 CAATTTTTTG
798489 TGTATCGATACAT
1 TGTATCGATACAT
798502 TGTATCGATACAT
1 TGTATCGATACAT
798515 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:799879 original size:476 final size:474
Alignment explanation
Indices: 798899--801845 Score: 3554
Period size: 476 Copynumber: 6.2 Consensus size: 474
798889 TCCTAACAAA
* * * * * * * *
798899 AATCATCATTATCAATTA-CTTAATGAGGAAAATGTGTTAACAATGCCTAATCAAAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* *
798963 AAGAAT-ATTACTAGAA-CCATG-TTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
66 AAG-ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC-CGAACTTACACTTTACAAAAATTG
* * * ** * * * *
799025 ATGGGAAGAAAGCCTTTCTTATGAAACTAAAGTGTCAATATCGTGTA-CCTTTATGTGAAGACTA
129 GTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCGTCTATCC-TAATGAGAAGACTA
* *
799089 TGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTA
193 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * ** ** * *
799154 AGAGATAAACTTTGATTTTAT-AATAAA-TAGTGGAAAGAAAAGTTTTCTTTTGACACCAAAGCA
258 AGAGACAAACTTTGATTCTATCAA-AAACGAG-AGAAAGAAACCTTTTCTTGCGACGCAAAAGCA
* * * *
799217 TCGATGTCATGCATCCTATTGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAATAGAGAC
321 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGAC
* * ** * * * * * * *
799282 TATCACGAGAATCAATATTTGTCTTGTTTAAGAGATGAACTTTGATTTTAAGAAAAAT-AGGGTA
386 TGTCACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCA-GGCA
* *
799346 AAAAAAAGATTTTCATCCAAAAGAT
450 AAGAAAAGATTTTCATGCAAAAGAT
* * * *
799371 AATTATCCATATCATTTATCTTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
799436 AAGATCATTACGAGAATCTATGTTTATCTCATTTGAGGTCTGAACTTACATTTTACAAAATTTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG-CCGAACTTACACTTTACAAAAATTGG
** *
799501 TGGGAAGAAAGCCTTTCTTTTGACACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTATG
130 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTATG
* * * * * * *
799566 TTTACGATGCCTAATCCTAAAAAGAATGGGGATTAGTTTGGCTACTCATGTTTGTCTTCTTTAAG
195 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
799631 AGACAAACATTAATTCTATCAAAAACGAGAGAAAGAGAACCTTTTCTTGCGACGCAAAAGCATCA
260 AGACAAACTTTGATTCTATCAAAAACGAGAGAAAGA-AACCTTTTCTTGCGACGCAAAAGCATCA
* * * * *
799696 ATGTCATGTATTCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACAGC
324 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGT
* * * * *
799761 CACGAGAATCGGTGCTTGTCATATTTAAGGGATCAATTTTTCTTTTCAGGAAAATCAGGCAAGGA
389 CACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGA
* *
799826 AAAGATTTCCGTGCAAAAGAT
454 AAAGATTTTCATGCAAAAGAT
* * *
799847 AATCATCAATATCATTTATCCTAACGAGGAGAATGCGTTTATAGTGGCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
799912 AAGATCATTCCTAGAATTCGTGTTTGTCTCA-TTGAAGACTCGAACTTACACTTTACAAATATTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTG-AGGC-CGAACTTACACTTTACAAAAATTG
* *
799976 GTGGGAAGAAAGCCTTTCTTGCGAAAGCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTAT
129 GTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTAT
* * * * *
800041 GTTTATGGTGCCTAATCCTGGAATGAATGGGGAATAGTATGACTATTCATGTTTATCTTCTTTAA
194 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * * * *
800106 GAGACAAACTTTGATTCTATTAAAAATG-GTAGAAAGAAATGCTTTTATTGCGACACCAAAGCTT
259 GAGACAAACTTTGATTCTATCAAAAACGAG-AGAAAGAAA-CCTTTTCTTGCGACGCAAAAGCAT
* ** * *
800170 CAATGTCATGTATCCTAATGAAAGGAATGACTTCTTGGTTCCTAATCTTG-AAAGAAATGGAGAC
322 CAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG-AATAGAGAC
* * *
800234 TGTCACGAGAATCGAAGCTTGTCATATTTAAGGGATGAATTTTTGTTTTAAGGAAAATCGGGCAA
386 TGTCACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAA
*
800299 AGAAAAGATTTTCATGTAAAAGAT
451 AGAAAAGATTTTCATGCAAAAGAT
* *
800323 AATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATA--GCCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
800386 AAGATCATTTCTAGAA-CTATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTAG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC-CGAACTTACACTTTACAAAAATTGG
* * * * * * * *
800450 TGGGAAGAAAGCCTTTCTTGC-ATAACTAAAGCATCAATATTGTGTACCCTTATGTGAAGACTAT
130 TGGGAAGAAAGCCTTTCTTACGA-AACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTAT
* *
800514 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGATTACTT-ATGTTTGTTTTATTTA
194 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TTCATGTTTGTCTTATTTA
* * *
800578 AGAGACAAACTTTGATTCTATCACAAACG-GTGATAAGAAAAGCTTTTCTTGCGGCAC-CAAAA-
258 AGAGACAAACTTTGATTCTATCAAAAACGAGAGA-AAG-AAACCTTTTCTTGC-G-ACGCAAAAG
** * *
800640 CATCAATAACATGTATCCTAATGAATGGAATTTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAG
319 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAG
* * * * *
800705 ACTGTCACGAGAATCAAT-TTTGTC-TAGTTTAAGGGATGAACTTTGACTTTAAGGAAAAT-ACG
384 ACTGTCACGAGAATCGATGCTTGTCATA-TTTAAGGGATGAATTTTTATTTTAAGGAAAATCA-G
** * *
800767 ATAAAGAAAAGATTTTCAAGCAAAA-CT
447 GCAAAGAAAAGATTTTCATGCAAAAGAT
* * * *
800794 AAACCACCAATATCATTTATCCTAATGAGAAGATTGTGTTTATAGTGCCTAATCACAAAATGAAT
1 -AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *
800859 GAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCCCGAACTTACACCTTATAAAAATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG-CCGAACTTACACTTTACAAAAATTG
* * * * **
800924 ATGAGAAGAAAGCCTTTCGTGCGAAACTGAAGCATTAATATCGTCTATCCTAATGAGAAGACTAT
129 GTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTAT
* *
800989 GTTTATGGGGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTTATTTAA
194 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * *
801054 GAGACAAACTTTGATTCTATCGAAAAA-AAGAGAAAGAAAACCTTTTCTTGCGATGCCAAAGCAT
259 GAGACAAACTTTGATTCTATC-AAAAACGAGAGAAAG-AAACCTTTTCTTGCGACGCAAAAGCAT
* * * * * *
801118 CAATGTCGTGTATCCTAATTAAGGGATTATGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACT
322 CAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACT
* * * * * *
801183 GTCACGAGAATCGATGCTTATCATATTGAAAGGATGAATTTTTATTTTAAGGTAAATCGGGCAAG
387 GTCACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAA
*
801248 GAAAAGATTTTCGTGCAAAAGAT
452 GAAAAGATTTTCATGCAAAAGAT
*
801271 AATCATCAATATCATTTGTCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
801336 AAGATCATTACTAGAATCCGTGTTTATCTTATTTGACGCCCGAACTTACACTTTACAAAAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCCGAACTTACACTTTACAAAAATTGG
* *
801401 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCATATATCCTAATGAGAAGACTATG
130 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTATG
* * *
801466 TTTATGGTGCCTAGTCCTGAAAAGCATGGGGATTAGTATGACTATTCATGTTTGTCTTCTTTAAG
195 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * *
801531 AGATAAACATTGATTCTATCAAAATCGAGAGGAAGAGAACATTTTCTTGCGACGCAAAAGCATCA
260 AGACAAACTTTGATTCTATCAAAAACGAGAGAAAGA-AACCTTTTCTTGCGACGCAAAAGCATCA
* * * **
801596 ATGTCATATATTCTAATGAAGGGAATGTGTTCTAGGTTCCCAATCTTGATGAGAATAGAGACTGT
324 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGT
* * *
801661 AACGAGAAT-GATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCGGGCAAGGA
389 CACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGA
*
801725 AAAGATTTCCATGCAAAAGAT
454 AAAGATTTTCATGCAAAAGAT
** * * * *
801746 AATCATCAATATTGTTTA-CACTAACGAGGAGAATGTGTTAATAATGCCTAATCACAAAATGAAA
1 AATCATCAATATCATTTATC-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *
801810 GAAGATCATTACAAGAA-CAATGTTTGTCTCAATTGA
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
801846 TGCATGAACT
Statistics
Matches: 2118, Mismatches: 313, Indels: 86
0.84 0.12 0.03
Matches are distributed among these distances:
471 3 0.00
472 111 0.05
473 304 0.14
474 111 0.05
475 586 0.28
476 998 0.47
477 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCCGAACTTACACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCGTCTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACGAGAGAAAGAAACCTTTTCTTGCGACGCAAAAGCATCAAT
GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCA
CGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATCAGGCAAAGAAA
AGATTTTCATGCAAAAGAT
Done.