Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold369
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1106593
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 5 of 6
Found at i:802794 original size:476 final size:473
Alignment explanation
Indices: 801862--806131 Score: 4433
Period size: 476 Copynumber: 9.0 Consensus size: 473
801852 AACTTTGAGT
* * * **
801862 GATGAACTTTGATTTTAAGGAAAATAGGGCCAA-AAAAGATTTCCATGCAAAAAAAAATCGTCGG
1 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* *
801926 TATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAATATCATT
66 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
801991 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTTCAAAAATTGGT-AGGAAGA
131 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGA-GAAGA
* ** * * * * *
802055 AAGCTTTTCTTGCGAAACTGAAGCATTAATATCGTGCAT-CTTAATGAGACGACAATGTTTATTG
195 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT-ATGAGAAGACTATGTTTATGG
* * * * * * * *
802119 TACCTTATCTTGAAAAGAATGGGGATTACTGTGACTAGTCATGTTTGTCTTATTTAAGAGAAAAA
259 TGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
802184 CTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTACGACACCAAAGCATCATTGTCAT
324 CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* ** * * * *
802249 GTATCTTAATGTTGGGAATGTGATTTTGGTTACCAATATTGAAAAGAATGTAGACTGTTGTGAGA
389 GTATCCTAATGAGGGGAATGTG-TTTTGGTT-CCAATCTT-AAAAAAATGGAGACTGTTATGAGA
* * *
802314 ATCAATGCTTGCCTTGTTTAAAG
451 ATCAATGCTTGTCTTATTTAAGG
* **
802337 GATGAAGCTTT-ATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGTGAATCATCA
1 GATGAA-CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * * * * * *
802401 ATATCTTTTACCCTAATGAAGAGAATGTGTTTATTGTGCCTAATCATAAAATAAATGATGACCAT
65 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * ** * *
802466 TGCTAGAATCCATGTTTGTC-CAATGTGAGGCTTGAACTTAGATTTTACAAAAATTAGTGAGAAG
130 TACTAGAATCCATGTTTGTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAG
** * * *
802530 AAAGCCTTTCTTATGAAACCAAAGCACCAATATTGTGTATCCTTATGAGAAGGCTATGTTTATGG
194 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * *
802595 TGCCTAATCCTGAAAAGAATTAGGATTAGTATGACTATTTATGTTTGTGTTATTTAGGAGACAAA
259 TGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * * * * * *
802660 CTTTCATTCGATCAAAAACGGGGGAAAGAAAACCTTTTTTTGCGACATCAAAGTATTAATGTCAT
324 CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* ** * * * *
802725 GTATCTTAATGTTGGAAATGTGATTTTGGTTGCCAATTTTAAGAAAAATGGAGGCTGTTATGGGA
389 GTATCCTAATGAGGGGAATGTG-TTTTGGTT-CCAATCTTAA-AAAAATGGAGACTGTTATGAGA
* *
802790 ATCAATGCTTGCCTTGTTTAAGG
451 ATCAATGCTTGTCTTATTTAAGG
* * *
802813 GATGAACTTTGATTTTAAGGACAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAATTCATCAA
1 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * **
802878 TATCATTTATCCTAATAAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATAAAGATTGTT
66 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * *
802943 ACTGGAAT-CATTTTTATCTCGTGTT-AGGTAC-ATACTTAGACTTTACAAAAATTGGT-AGAAA
131 ACTAGAATCCATGTTTGTCTCAT-TTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGAG-AA
* * * * * *
803004 GAAAG-CTTTTTCTGTGAAACCAAAGCGTCAATATTGCGTATCCTTATGAGAAGACTATGCTTAT
193 GAAAGCCTTTCT-TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
* *
803068 TGTGCCTAATCTTGAAAAG-ATTGGGGATTAGTATGACTATTCATGTTT-TCCTTATTTAAGAGA
257 GGTGCCTAATCCTGAAAAGAATT-GGGATTAGTATGACTATTCATGTTTGT-CTTATTTAAGAGA
* *
803131 CAAACTTTGATTCTATCAAAAATGAG-GGAAAGAAAACCTTTTCTTGCGACACCAAAGCATTAA-
320 CAAACTTTGATTCTATCAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * * ** *
803194 --C--GTCTCGTAATGAAGTGAATGTGTTCTTAGTTCCCAATCTTGAAAAGCATGGAGACAGTTA
384 GTCATGTATCCTAATGAGGGGAATGTGTT-TTGGTT-CCAATCTT-AAAAAAATGGAGACTGTTA
* *
803255 TGAGAAT-ATATGCTTGCCTTGTTTAAGAG
446 TGAGAATCA-ATGCTTGTCTTATTTAAG-G
* * * * *
803284 GCA--AACTTTTATTTTAAGGAATATAGAGCAAATAAAAGATTTTCATGCAAAAG-AAATCCATC
1 G-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATC
* * *
803346 AATATCATTTATCCTAAAGAGGAGAATGTGTTTAT-G-GCATCTAATCACAAAATAAATGAAGCT
64 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC--CTAATCACAAAATGAATGAAGAT
* * * * *
803409 CATTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACAGAAATTAGTG-GA
127 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAG-
* *** ** * * * * *
803473 AAGAAAGCCTTTTTTATAAAATAAAAGCATCAAAATCGTCTATCCTAATGAGAAGATTACGTTTA
191 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * *
803538 TGGTGTCAAAT-CTAGAAAAGAA-TGGGATTAGTATGACTATGT-ATGTTTGTCTTATTTAAAAG
256 TGGTGCCTAATCCT-GAAAAGAATTGGGATTAGTATGACTAT-TCATGTTTGTCTTATTTAAGAG
* * * * * * *
803600 ACAAACTTTAATTTTATTAAAAATGGTGGAAAGAAAAGCTTTACTTGCGATACTAAAGCATTAAT
319 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * ** *
803665 GTCATGTATCTTAATGAAGGGAACATGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
384 GTCATGTATCCTAATGAGGGGAATGTGTT-TTGGTT-CCAATCTT-AAAAAAATGGAGACTGTTA
* * *
803730 TGATAATCAATG-TTGGTCTTGTTTAAGT
446 TGAGAATCAATGCTT-GTCTTATTTAAGG
* * * * * * *
803758 GATGAACTATGATTTTAAGGAAAATAGGGCACAGAGAAGATTTTCATGCAAAA-AAAAACCTTAA
1 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * *
803822 TATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATCAAGATCATT
66 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * *
803887 ACTAGAATCCATGTTTGT-TCCATTTAAGGCACGAACTTACACTTTACAAAAATTAGAGGGAAGA
131 ACTAGAATCCATGTTTGTCT-CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGA
* * * * * * *
803951 AAGCTTTTCTTGTGAAACCAAAGAATCAATATCTTCTATCCTAATGAGAAGACTATATTTATGGT
195 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * *
804016 GCTTAAT-CTAGAAAAGAATGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
260 GCCTAATCCT-GAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * * * *
804080 CGTTAATTTTATCAAGAACGGGGGAAAGAAAAGCTTTT-TTGTGACACCAAAGCATCAATGTCAT
324 CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * *
804144 GTATCCTAATGAAGGGAATGTGTTTTGGGTTTCCAATCTTGAAAAGAGTGGAGACTATCATGTGA
389 GTATCCTAATGAGGGGAATGTGTTTT-GG-TTCCAATCTT-AAAAAAATGGAGACTGTTATGAGA
804209 AT-AGATGCTTGTCTTATTTAAGG
451 ATCA-ATGCTTGTCTTATTTAAGG
** * * * *
804232 GACAAATTTTGATTTTATGGAAAATCA-GGCAAAGAATAGATTTCCATGCAATAGAAAATCATCA
1 GATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * *
804296 ATATCATTTATCCTAATGACGAGAATGTTTTTATAATGCCTAATCACAAAATGAATAAAGATCAT
65 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * **
804361 TACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACTTAGACTTTACCAAAATTGGCAAGACA-
130 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGA-AG
* * * * *
804425 AAAGCCCTTT-TTACGAAACCAAAGCATCAATATCATATATCC-TAAGAAGAAGAATATGTTTAT
194 AAAG-CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTATGTTTAT
* * *
804488 GATGCCTAATCCAGAAAAGAATTGGGATTAGTAT-ACGTATTCAAGTTTGTCTTATTTAAGAGAC
257 GGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGAC-TATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
804552 AAACATTGATTCTATAAAAAATGGTGGAAATAAAACCTTTTCTTGCAAAACCATAGCATCAATGT
321 AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
*
804617 CATTTATCCTAATGAGGGGATTATGT-TTTTGGTTCCTAATCTTAAAAAGAATGGAGACTGTTAT
386 CATGTATCCTAATGAGGGGA--ATGTGTTTTGGTTCC-AATCTTAAAAA-AATGGAGACTGTTAT
** *
804681 GAGAATTGATGCTTGTCTTATGTAAGG
447 GAGAATCAATGCTTGTCTTATTTAAGG
* * * *
804708 GATGAATTTTGATTTTATGGAAAATCA---CATGAAGAAAAGATTTCCTTGCAAAAGAAAATGAT
1 GATGAACTTTGATTTTAAGGAAAAT-AGGGCA--AAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
804770 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAACGAATGAATATC
63 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
804835 ATTACT--AATCCAAGTTTGTCTCATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTGGGAA
128 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAA
* * * * **
804898 GAAAGCCTTTCTTGCGATACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTAACTTTATG
193 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * *
804963 GTGCCTAATCCTAAAAAGAA-TGGGCATTAGTATGAGTATTCAAGTTTGTCTTATTTGAGAGACA
258 GTGCCTAATCCTGAAAAGAATTGGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * * * * **
805027 AACTTTGATTCGACCAAAAATTGTTGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGTC
322 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * * *
805092 ATGTACCCTAATGAAGGGAATGTGTTTTCGCTTTCCAATCTTGAAAAGA-GCAGAGACTATCATG
387 ATGTATCCTAATGAGGGGAATGTGTTTT-G-GTTCCAATCTTAAAAAAATG--GAGACTGTTATG
** *
805156 TCAATCGATGCTTGTCTTATTTAAGG
448 AGAATCAATGCTTGTCTTATTTAAGG
* * * * *
805182 GATAAATTTTGATTTTATGGAAAATCA-GGCAAAGAATAGATTTCCATGCAATAGAAAATCATCA
1 GATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
*
805246 ATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
65 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * **
805311 TACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACTTAGACTTTACCAAAATTGGCAAGACA-
130 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGA-AG
* * * * * *
805375 AAAGCCTTTTTTACGAAACCAAAGCATCAATATCGTCTATCCTAATAAGAAGAATATGTTTATGG
194 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* ** * * * *
805440 TGCCTAATACAAAAAAAAATTGGGATTAGTATAAGTATTCAAGTTTGTCTTATTTAAGAGACAAA
259 TGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * * *
805505 CATTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAAAACCATAGCATCAATGTCAT
324 CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* *
805570 TTATCCTAATGAGGGGATTATGT-TTTTGGTTCCTAATCTTAAAAAGAATGGAGACTGTTACGAG
389 GTATCCTAATGAGGGGA--ATGTGTTTTGGTTCC-AATCTTAAAAA-AATGGAGACTGTTATGAG
** *
805634 AATTGATGCTTGTCTTATGTAAGG
450 AATCAATGCTTGTCTTATTTAAGG
* * * *
805658 GATGAATTTTGATTTTATGGAAAATCA---CATGAAGAAAAGATTTCCTTGCAAAAGAAAATGAT
1 GATGAACTTTGATTTTAAGGAAAAT-AGGGCA--AAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
805720 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAACGAATGAATATC
63 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
805785 ATTACT--AATCCAAGTTTGTCTTATTTGAGGCACGAATTTAGACTTTATAAAAATTGGT-AGGA
128 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGA-GA
* * * **
805847 AGAAAGCCTTTCTTGCGATACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAACTTTAT
192 AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
* * * * *
805912 GGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTGAGAGACA
257 GGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * * * **
805977 AACTTTGATTCGACCAAAAACT-GTTGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGT
322 AACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * * * * *
806041 CATGTACCCTAATGAAGGGAATGTGTTCTTGGTTCCCACTATTGAAAAGAATGGAGTCTATGATG
386 CATGTATCCTAATGAGGGGAATGTGTT-TTGGTT-CCAATCTT-AAAAAAATGGAGACTGTTATG
* *
806106 AGAATTAATGCTTGCCTTATTTAAGG
448 AGAATCAATGCTTGTCTTATTTAAGG
806132 CATTTATAGT
Statistics
Matches: 3198, Mismatches: 498, Indels: 199
0.82 0.13 0.05
Matches are distributed among these distances:
468 2 0.00
469 7 0.00
470 265 0.08
471 103 0.03
472 19 0.01
473 25 0.01
474 982 0.31
475 695 0.22
476 1073 0.34
477 18 0.01
478 9 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (473 bp):
GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAA
AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTG
CCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATGAGGGGAATGTGTTTTGGTTCCAATCTTAAAAAAATGGAGACTGTTATGAGAATCAA
TGCTTGTCTTATTTAAGG
Found at i:804700 original size:159 final size:159
Alignment explanation
Indices: 802157--806130 Score: 949
Period size: 159 Copynumber: 25.1 Consensus size: 159
802147 CTGTGACTAG
* * * * * *
802157 TCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTC
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
* * * * * * * * * * *
802222 CTTACGACACCAAAGCATCATTGTCATGTATCTTAATGTTGG-GAATGTGATTTTGGTTACC-AA
66 CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTGG-TGCCTAA
* * * *
802285 TATTGAAAAGAATGTAGACTGTTGTGAGAA-
129 TCTTAAAAAGAATGGAGACTGTTATGAGAAT
* * * * * *
802315 TCAATGCTTGCCTTGTTTAA-AGGATGAAGCTTT-ATT-T-TAAGGAAAATAGG-GTAAAGAAAA
1 TC-ATGTTTGTCTTATTTAAGA-GA-CAAACTTTGATTCTATAA--AAAAT-GGTGGAAAGAAAA
** * * *** * * * * *
802375 GATTTCCATGCAAAAGTGAATCATCAATATCTTTTACCCTAATGAAGAGAATGTGTTTATT-GTG
60 CCTTTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTT-TTGGTG
* ** *
802439 CCTAATCATAAAATA-AAT-GATGACCATTGCT-AGAAT
124 CCTAATCTTAAAA-AGAATGGA-GACTGTT-ATGAGAAT
* ** * * * * * * * * *
802475 CCATGTTTGTCCAATGT--GAGGCTTGAACTTAGATTTTACAAAAATTAGT-GAGAAGAAAGCC-
1 TCATGTTTGTCTTATTTAAGAGAC--AAACTTTGATTCTATAAAAAATGGTGGA-AAGAAAACCT
*** * ** * * * ** *
802536 TTTCTTATGAAACCAAAGCACCAATATTGTGTATCCTTATGAGAAGGCTATGTTTATGGTGCCTA
63 TTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTA
* * * * **
802601 ATCCTGAAAAGAAT-TAGGATTAG-TATGACTAT
128 ATCTTAAAAAGAATGGA-GACT-GTTATGAGAAT
* * * * * * * *
802633 TTATGTTTGTGTTATTTAGGAGACAAACTTTCATTCGATCAAAAACGGGGGAAAGAAAACCTTTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
* * * * * * * * * * * *
802698 TTTGCGACATCAAAGTATTAATGTCATGTATCTTAATGTTGGA-AATGTGATTTTGGTTGCC-AA
66 CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTGG-TGCCTAA
* * *
802761 TTTTAAGAAA-AATGGAGGCTGTTATGGGAA-
129 TCTTAA-AAAGAATGGAGACTGTTATGAGAAT
* * * * ** * * **
802791 TCAATGCTTGCCTTGTTTAAGGGATGAACTTTGATT-T-TAAGGACAATAGG-GCAAAGAAAAGA
1 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAA--AAAAT-GGTGGAAAGAAAACC
* * * * * * **
802853 TTTCCATGCAAAA-CAAATTCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAATGCC
62 TTTTCTTGCAAAACCAAA-GCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCC
** * ** *
802917 TAATCACAAAATGAATAAAGATTGTTACTG-GAA-
126 TAATCTTAAAAAGAATGGAGACTGTTA-TGAGAAT
* * ** * * * * * * *
802950 TCATTTTTATCTCGTGTT-AG-GTACATACTTAGACTT-TACAAAAATTGGTAGAAAGAAAGCTT
1 TCATGTTTGTCTTAT-TTAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAACCT
* **** * * * *
803012 TTTCTGTG--AAACCAAAGCGTCAATATTGCGTATCCTTATGAGAAGACTATGCTTATT-GTGCC
63 TTTCT-TGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATG-TTTTTGGTGCC
* * * * **
803074 TAATCTTGAAAAGATTGGGGATTAG-TATGACTAT
126 TAATCTTAAAAAGAATGGAGACT-GTTATGAGAAT
*
803108 TCATGTTT-TCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGAG-GGAAAGAAAACCTT
1 TCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCTATAAAAAATG-GTGGAAAGAAAACCTT
* * ** * * * * * * * * *
803171 TTCTTGCGACACCAAAGCAT---TA--ACGTCTCGTAATGAAGTGAATGTGTTCTTAGTTCCCAA
64 TTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTAA
* * *
803231 TCTTGAAAAGCATGGAGACAGTTATGAGAAT
129 TCTTAAAAAGAATGGAGACTGTTATGAGAAT
* * * * * * * * * * **
803262 AT-ATGCTTGCCTTGTTTAAGAGGCAAACTTTTATT-T-TAAGGAATATAGAGCAAATAAAAGAT
1 -TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAA--AAAATGGTGGAAAGAAAACCT
* * * * * * ***
803324 TTTCATGCAAAA-GAAATCCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATGGCATCT
63 TTTCTTGCAAAACCAAA-GCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCT
** * *
803388 AATCACAAAATA-AATGAAG-CTCATTA-GTAGAAT
127 AATCTTAAAA-AGAATGGAGACT-GTTATG-AGAAT
* * * ** * * * * *
803421 CCATGTTTGTCTCATTT--GAGGCATGAACTTACACTT-TACAGAAATTAGTGGAAAGAAAGCCT
1 TCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAACCT
** ** * * * * * * * * *
803483 TTT-TTATAAAATAAAAGCATCAAAATCGTCTATCCTAATGAGAAGATTACGTTTATGGTGTCAA
63 TTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTA
* **
803547 ATC-TAGAAAAGAATGG-GATTAG-TATGACTAT
128 ATCTTA-AAAAGAATGGAGACT-GTTATGAGAAT
* * * * *
803578 GT-ATGTTTGTCTTATTTAAAAGACAAACTTTAATTTTATTAAAAATGGTGGAAAGAAAAGCTTT
1 -TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTT
* * * * * * * * * * * *
803642 ACTTGCGATACTAAAGCATTAATGTCATGTATCTTAATGAAGG-GAACATGTTCTTGGTTCCCAA
65 TCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTGGTGCCTAA
* *
803706 TCTTGAAAAGAATGGAGACTGTTATGATAA-
129 TCTTAAAAAGAATGGAGACTGTTATGAGAAT
* * * ** * * * * **
803736 TCAATGTTGGTCTTGTTTAAGTGATGAACTATGATT-T-TAAGGAAAATAGG-GCACAGAGAAGA
1 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAA--AAAAT-GGTGGAAAGAAAACC
* * * * * * * * * *
803798 TTTTCATGCAAAA-AAAAACCTTAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCAT
62 TTTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCT
** * ** *
803862 AATCACAAAATGAATCAAGA-TCATTACT-AGAAT
127 AATCTTAAAAAGAATGGAGACT-GTTA-TGAGAAT
* * * ** * * * * * *
803895 CCATGTTTGT-TCCATTTAAG-GCACGAACTTACACTT-TACAAAAATTAGAGGGAAG-AAAGCT
1 TCATGTTTGTCT-TATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAACCT
** * * * * * *
803956 TTTCTTGTGAAACCAAAGAATCAATATC-TTCTATCCTAATGAGAAGACTATATTTATGGTGCTT
63 TTTCTTGCAAAACCAAAGCATCAATATCATT-TATCCTAATGAGGAGAATATGTTTTTGGTGCCT
* * * **
804020 AATC-TAGAAAAGAATGGGGATTAG-CATGACTAT
127 AATCTTA-AAAAGAATGGAGACT-GTTATGAGAAT
* * * * * * * *
804053 TCATGTTTGTCTTATTTAAGAGACAAACGTTAATTTTATCAAGAACGGGGGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
** * * * * * *
804118 -TTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTGGGTTTCC-AA
66 CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTGG-TGCCTAA
* * * * *
804180 TCTTGAAAAGAGTGGAGACTATCATGTGAAT
129 TCTTAAAAAGAATGGAGACTGTTATGAGAAT
** * * * * ** * * * **
804211 AGATGCTTGTCTTATTTAAGGGACAAATTTTGATTTTATGGAAAATCAG-GCAAAGAATAGATTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT-GGTGGAAAGAAAACCTTT
* * * ** * * * **
804275 CCATGCAATAGAAAATCATCAATATCATTTATCCTAATGACGAGAATGT-TTTTATAATGCCTAA
65 TCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTT-TGGTGCCTAA
** * ** *
804339 TCACAAAATGAATAAAGA-TCATTACT-AGAAT
129 TCTTAAAAAGAATGGAGACT-GTTA-TGAGAAT
* * * * * * ** *
804370 CCATGTTTCTCTCATTTGAG-GTACGAACTTAGACTT-TA-CCAAAAT--TGGCAAGACAAAAGC
1 TCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGG-AA-AGAAAA-C
* * * * * * *
804430 CCTTT-TTACGAAACCAAAGCATCAATATCATATATCCTAA-GAAGAAGAATATGTTTATGATGC
61 CTTTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTGGTGC
* * *
804493 CTAATC-CAGAAAAGAATTGG-GATTAG-TAT-ACGTAT
125 CTAATCTTA-AAAAGAA-TGGAGACT-GTTATGA-GAAT
* * *
804528 TCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAATAAAACCTTTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
* * * * *
804593 CTTGCAAAACCATAGCATCAATGTCATTTATCCTAATGAGGGGATTATGTTTTTGGTTCCTAATC
66 CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTAATC
804658 TTAAAAAGAATGGAGACTGTTATGAGAAT
131 TTAAAAAGAATGGAGACTGTTATGAGAAT
* * * * ** * * ** ** **
804687 TGATGCTTGTCTTATGTAAGGGATGAATTTTGATTTTATGGAAAATCACAT-G-AAGAAAAGATT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT--GGTGGAAAGAAAACCTT
* ** * * *
804750 TCCTTGCAAAAGAAAATG-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
64 TTCTTGCAAAACCAAA-GCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTA
* * * * * *
804814 ATCATAAAACGAAT-GA-A-TATCATTACTAAT
128 ATCTTAAAAAGAATGGAGACTGTTATGA-GAAT
* * * * * * * *
804844 CCAAGTTTGTCTCATTTGAG-GCACGAA-TTTAGACTT-TATAAAAATTGGTGGGAAGAAAGCC-
1 TCATGTTTGTCTTATTTAAGAG-ACAAACTTT-GA-TTCTATAAAAAATGGTGGAAAGAAAACCT
* * * * * * * ** *
804905 TTTCTTGCGATACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTAACTTTATGGTGCCTA
63 TTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTA
* * *
804970 ATCCTAAAAAGAATGG-GCATTAG-TATGAGTAT
128 ATCTTAAAAAGAATGGAG-ACT-GTTATGAGAAT
* * * ** * * *
805002 TCAAGTTTGTCTTATTTGAGAGACAAACTTTGATTCGACCAAAAATTGTTGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
* *** * * * * * * * *
805067 TTTATGACACCAAAGCATCAATGTCATGTACCCTAATGAAGG-GAATGTGTTTTCGCTTTCC-AA
66 CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTG-GTGCCTAA
* *** * * **
805130 TCTTGAAAAGAGCAGAGACTATCATGTCAA-
129 TCTTAAAAAGAATGGAGACTGTTATGAGAAT
* * * * * ** * * * **
805160 TCGATGCTTGTCTTATTTAAGGGATAAATTTTGATTTTATGGAAAATCAG-GCAAAGAATAGATT
1 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT-GGTGGAAAGAAAACCTT
* * * ** * * *
805224 TCCATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT-TTTTATAGTGCCTA
64 TTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTT-TGGTGCCTA
** * * *
805288 ATCACAAAATGAATGAAGA-TCATTACT-AGAAT
128 ATCTTAAAAAGAATGGAGACT-GTTA-TGAGAAT
* * * * * * ** *
805320 CCATGTTTCTCTCATTTGAG-GTACGAACTTAGACTT-TA-CCAAAAT--TGGCAAGACAAAAGC
1 TCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGG-AA-AGAAAA-C
* * * * * * *
805380 CTTTT-TTACGAAACCAAAGCATCAATATCGTCTATCCTAATAAGAAGAATATGTTTATGGTGCC
61 CTTTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCC
* * * * *
805444 TAATAC-AAAAAAAAATTGG-GATTAG-TATAAGTAT
126 TAAT-CTTAAAAAGAA-TGGAGACT-GTTATGAGAAT
* *
805478 TCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
* * * * *
805543 CTTGCAAAACCATAGCATCAATGTCATTTATCCTAATGAGGGGATTATGTTTTTGGTTCCTAATC
66 CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTAATC
*
805608 TTAAAAAGAATGGAGACTGTTACGAGAAT
131 TTAAAAAGAATGGAGACTGTTATGAGAAT
* * * * ** * * ** ** **
805637 TGATGCTTGTCTTATGTAAGGGATGAATTTTGATTTTATGGAAAATCACAT-G-AAGAAAAGATT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT--GGTGGAAAGAAAACCTT
* ** * * *
805700 TCCTTGCAAAAGAAAATG-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
64 TTCTTGCAAAACCAAA-GCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTA
* * * * * *
805764 ATCATAAAACGAAT-GA-A-TATCATTACTAAT
128 ATCTTAAAAAGAATGGAGACTGTTATGA-GAAT
* * * * * *
805794 CCAAGTTTGTCTTATTTGAG-GCACGAA-TTTAGACTT-TATAAAAATTGGTAGG-AAGAAAGCC
1 TCATGTTTGTCTTATTTAAGAG-ACAAACTTT-GA-TTCTATAAAAAATGGT-GGAAAGAAAACC
* * * * * * * ** *
805855 -TTTCTTGCGATACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAACTTTATGGTGCCT
62 TTTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCT
* * * *
805919 AATCCTAAAAAGAATGGGGATTAG-TATGAGTAT
127 AATCTTAAAAAGAATGGAGACT-GTTATGAGAAT
* * * * * * *
805952 TCAAGTTTGTCTTATTTGAGAGACAAACTTTGATTCGACCAAAAACT-GTTGAAAGAAAAGCTTT
1 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA-TAAAAAATGGTGGAAAGAAAACCTTT
* *** * * * * * * * * *
806016 TTTTATGACACCAAAGCATCAATGTCATGTACCCTAATGAAGG-GAATGTGTTCTTGGTTCCCAC
65 TCTTGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATATGTTTTTGGTGCCTAA
* * * * *
806080 TATTGAAAAGAATGGAGTCTATGATGAGAAT
129 TCTTAAAAAGAATGGAGACTGTTATGAGAAT
* * *
806111 TAATGCTTGCCTTATTTAAG
1 TCATGTTTGTCTTATTTAAG
806131 GCATTTATAG
Statistics
Matches: 2672, Mismatches: 917, Indels: 453
0.66 0.23 0.11
Matches are distributed among these distances:
152 2 0.00
153 10 0.00
154 95 0.04
155 5 0.00
156 148 0.06
157 248 0.09
158 907 0.34
159 1177 0.44
160 69 0.03
161 11 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (159 bp):
TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
CTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTGGTGCCTAATC
TTAAAAAGAATGGAGACTGTTATGAGAAT
Found at i:805205 original size:950 final size:946
Alignment explanation
Indices: 801862--806131 Score: 4827
Period size: 950 Copynumber: 4.5 Consensus size: 946
801852 AACTTTGAGT
** *
801862 GATGAACTTTGATTTTAAGGAAAATA-GGGCCAA-AAAAGATTTCCATGCAAAAAAAAATCG-TC
1 GATGAACTTTGATTTTAAGGAAAATACATG--AAGAAAAGATTTCCATGCAAAAGAAAAT-GATC
** *
801924 GGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAATATCA
63 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCA
*
801989 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTT-TCAAAAATTGGTAGGAA
128 TTACT-GAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTAT-AAAAATTGGTAGGAA
* ** * * * * * *
802053 GAAAGCTTTTCTTGCGAAACTGAAGCATTAATATCGTGCAT-CTTAATGAGACGAC-AATGTTTA
191 GAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTT-ATGAGAAGACTAA-CTTTA
* * * * * * * * *
802116 TTGTACCTTATCTTGAAAAGAATGGGGATTACTGTGACTAGTCATGTTTGTCTTATTTAAGAGAA
254 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
* * ** * *
802181 AAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTACGACACCAAAGCATCATTGT
319 AAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGT
* * ** * * * **
802246 CATGTATCTTAATGTTGGGAATGTGATTTTGGTTACCAATATTGAAAAGA--ATGTAGACTGTTG
384 CATGTACCCTAATGAAGGGAATGTG-TTTTGGTTTCCAATCTTGAAAAGAGCATG-AGACTATCA
* * ** *
802309 TGAGAATCA-ATGCTTGCCTTGTTTAAAGGATGAAGCTTTATTTTAAGGAAAATAGGGTAAAGAA
447 TGAGAAT-AGATGCTTGCCTTATTTAAGGGAT-AAATTTTATTTTAAGGAAAATA-GGCAAAGAA
** * * * *
802373 AAGATTTCCATGCAAAAGTGAATCATCAATATCTTTTACCCTAATGAAGAGAATGTGTTTATTGT
509 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * * * *
802438 GCCTAATCATAAAATAAATGATGACCATTGCTAGAATCCATGTTTGTC-CAATGTGAGGCT-TGA
574 GCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTCTCTC-ATTTGAGG-TACGA
* * * ** * * *
802501 ACTTAGATTTTACAAAAATTAGTGAGAAGAAAG-CCTTTCTTATGAAACCAAAGCACCAATATTG
637 ACTTAGACTTTACCAAAATTGGCAAGAA-AAAGCCCTTT-TTACGAAACCAAAGCATCAATATCG
* * ** * *
802565 TGTATCCTTATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAATTAGGATTAGTATGAC
700 TCTATCC-TAAGAGAAGAATATGTTTATGGTGCCTAATCCAGAAAAGAATTGGGATTAGTATGAC
* * * * * * * * * *
802630 TATTTATGTTTGTGTTATTTAGGAGACAAACTTTCATTCGATCAAAAACGGGGGAAAGAAAACCT
764 TATTCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAGAAAACCT
* * * * * * * ** * * *
802695 TTTTTTGCGACATCAAAGTATTAATGTCATGTATCTTAATGTTGGAAATGTGATTTTGGTTGCC-
829 TTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAATATGTTTTTGGTT-CCT
* * * * * *
802759 AATTTTAAGAAA-AATGGAGGCTGTTATGGGAATCAATGCTTGCCTTGTTTAAGG
893 AATCTTAA-AAAGAATGGAGACTGTTATGAGAATCAATGCTTGTCTTATGTAAGG
* * * *
802813 GATGAACTTTGATTTTAAGGACAATAGGGCA--AAGAAAAGATTTCCATGCAAAACAAATTCATC
1 GATGAACTTTGATTTTAAGGAAAATA---CATGAAGAAAAGATTTCCATGCAAAAGAAAATGATC
* * * * **
802876 AATATCATTTATCCTAATAAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATAAAGATTG
63 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCA
* * * * * * *
802941 TTACTGGAAT-CATTTTTATCTCGTGTT-AGGTAC-ATACTTAGACTTTACAAAAATTGGTAGAA
128 TTACT-GAATCCATGTTTGTCTCAT-TTGAGGCACGA-ATTTAGACTTTATAAAAATTGGTAGGA
* * *** *
803003 AGAAAG-CTTTTTCTGTGAAACCAAAGCGTCAATATTGCGTATCCTTATGAGAAGACTATGC-TT
190 AGAAAGCCTTTCT-TGCGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTA-ACTTT
* * * *
803066 ATTGTGCCTAATCTTGAAAAGATTGGGGATTAGTATGACTATTCATGTTT-TCCTTATTTAAGAG
253 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT-CTTATTTAAGAG
* * * ** *
803130 ACAAACTTTGATTCTATCAAAAA-TGAGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATTAA
317 ACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAA
* * * * *
803194 CGTC---T--CGTAATGAAGTGAATGTGTTCTTAGTTCCCAATCTTG-AAA-AGCATGGAGAC-A
381 TGTCATGTACCCTAATGAAGGGAATGTGTT-TTGGTTTCCAATCTTGAAAAGAGCAT-GAGACTA
* * * * *
803251 GTTATGAGAATATATGCTTGCCTTGTTTAAGAGGCA-AACTTTTATTTTAAGGAATATAGAGCAA
444 -TCATGAGAATAGATGCTTGCCTTATTTAAG-GG-ATAAATTTTATTTTAAGGAAAATAG-GCAA
* * *
803315 ATAAAAGATTTTCATGCAAAAG-AAATCCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTT
505 AGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * *
803379 AT-G-GCATCTAATCACAAAATAAATGAAGCTCATTAGTAGAATCCATGTTTGTCTCATTTGAGG
569 ATAGTGC--CTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGG
* * * * * * ** **
803442 CATGAACTTACACTTTA-CAGAAATTAGTGGAA-AGAAAGCCTTTTTTATAAAATAAAAGCATCA
632 TACGAACTTAGACTTTACCA-AAATT-G-GCAAGAAAAAGCCCTTTTTACGAAACCAAAGCATCA
* * * * * *
803505 AAATCGTCTATCCTAATGAGAAGATTACGTTTATGGTGTCAAATCTAGAAAAGAA-TGGGATTAG
694 ATATCGTCTATCCTAA-GAGAAGAATATGTTTATGGTGCCTAATCCAGAAAAGAATTGGGATTAG
* * * * * *
803569 TATGACTATGT-ATGTTTGTCTTATTTAAAAGACAAACTTTAATTTTATTAAAAATGGTGGAAAG
758 TATGACTAT-TCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAG
* * * * * * * * * *
803633 AAAAGCTTTACTTGCGATACTAAAGCATTAATGTCATGTATCTTAATGAAGGGAACATGTTCTTG
822 AAAACCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAATATGTTTTTG
* * * * * *
803698 GTTCCCAATCTTGAAAAGAATGGAGACTGTTATGATAATCAATG-TTGGTCTTGTTTAAGT
887 GTTCCTAATCTTAAAAAGAATGGAGACTGTTATGAGAATCAATGCTT-GTCTTATGTAAGG
* ** * * *** *
803758 GATGAACTATGATTTTAAGGAAAATA-GGGCACAGAGAAGATTTTCATGCAAAA-AAAAACCTTA
1 GATGAACTTTGATTTTAAGGAAAATACATG-A-AGAAAAGATTTCCATGCAAAAGAAAATGATCA
* * * *
803821 ATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATCAAGATCAT
64 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCAT
* * * * *
803886 TACTAGAATCCATGTTTGT-TCCATTTAAGGCACGAACTTACACTTTACAAAAATTAG-AGGGAA
129 TACT-GAATCCATGTTTGTCT-CATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTA-GGAA
* * ** * * *
803949 GAAAGCTTTTCTTGTGAAACCAAAGAATCAATATCTTCTATCCTAATGAGAAGACTATA-TTTAT
191 GAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTA-ACTTTAT
* *
804013 GGTGCTTAAT-CTAGAAAAGAATGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGAC
255 GGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
804077 AAACGTTAATTTTATCAAGAACGGGGGAAAGAAAAGC-TTTTTTGTGACACCAAAGCATCAATGT
319 AAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGT
*
804141 CATGTATCCTAATGAAGGGAATGTGTTTTGGGTTTCCAATCTTGAAAAGAG--TGGAGACTATCA
384 CATGTACCCTAATGAAGGGAATGTGTTTT-GGTTTCCAATCTTGAAAAGAGCAT-GAGACTATCA
* * * * *
804204 TGTGAATAGATGCTTGTCTTATTTAAGGGACAAATTTTGATTTTATGGAAAATCAGGCAAAGAAT
447 TGAGAATAGATGCTTGCCTTATTTAAGGGATAAATTTT-ATTTTAAGGAAAAT-AGGCAAAGAAA
* * * *
804269 AGATTTCCATGCAATAGAAAATCATCAATATCATTTATCCTAATGACGAGAATGTTTTTATAATG
510 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
804334 CCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACT
575 CCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACT
* *
804399 TAGACTTTACCAAAATTGGCAAGACAAAAGCCCTTTTTACGAAACCAAAGCATCAATATCATATA
640 TAGACTTTACCAAAATTGGCAAGA-AAAAGCCCTTTTTACGAAACCAAAGCATCAATATCGTCTA
*
804464 TCCTAAGAAGAAGAATATGTTTATGATGCCTAATCCAGAAAAGAATTGGGATTAGTAT-ACGTAT
704 TCCTAAG-AGAAGAATATGTTTATGGTGCCTAATCCAGAAAAGAATTGGGATTAGTATGAC-TAT
*
804528 TCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAATAAAACCTTTT
767 TCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTT
* * *
804593 CTTGCAAAACCATAGCATCAATGTCATTTATCCTAATGAGGGGATTATGTTTTTGGTTCCTAATC
832 CTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAATATGTTTTTGGTTCCTAATC
**
804658 TTAAAAAGAATGGAGACTGTTATGAGAATTGATGCTTGTCTTATGTAAGG
897 TTAAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGTCTTATGTAAGG
* * *
804708 GATGAATTTTGATTTTATGGAAAATCACATGAAGAAAAGATTTCCTTGCAAAAGAAAATGATCAA
1 GATGAACTTTGATTTTAAGGAAAAT-ACATGAAGAAAAGATTTCCATGCAAAAGAAAATGATCAA
* *
804773 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAACGAATGAATATCATT
65 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCATT
* *
804838 ACT-AATCCAAGTTTGTCTCATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTGGGAAGAAA
130 ACTGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTAGGAAGAAA
* *
804902 GCCTTTCTTGCGATACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTAACTTTATGGTGC
195 GCCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAACTTTATGGTGC
* * * *
804967 CTAATCCTAAAAAGAATGGGCATTAGTATGAGTATTCAAGTTTGTCTTATTTGAGAGACAAACTT
260 CTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
805032 TGATTCGACCAAAAATTGTTGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGTCATGTA
325 TGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGTCATGTA
* **
805097 CCCTAATGAAGGGAATGTGTTTTCGCTTTCCAATCTTGAAAAGAGCA-GAGACTATCATGTCAAT
390 CCCTAATGAAGGGAATGTGTTTT-GGTTTCCAATCTTGAAAAGAGCATGAGACTATCATGAGAAT
* * * *
805161 CGATGCTTGTCTTATTTAAGGGATAAATTTTGATTTTATGGAAAATCAGGCAAAGAATAGATTTC
454 AGATGCTTGCCTTATTTAAGGGATAAATTTT-ATTTTAAGGAAAAT-AGGCAAAGAAAAGATTTC
* *
805226 CATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATC
517 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
*
805291 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACTTAGACTT
582 ACAAAATAAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACTTAGACTT
*
805356 TACCAAAATTGGCAAGACAAAAGCCTTTTTTACGAAACCAAAGCATCAATATCGTCTATCCTAAT
647 TACCAAAATTGGCAAGA-AAAAGCCCTTTTTACGAAACCAAAGCATCAATATCGTCTATCCTAA-
* * * * * *
805421 AAGAAGAATATGTTTATGGTGCCTAATACAAAAAAAAATTGGGATTAGTATAAGTATTCAAGTTT
710 GAGAAGAATATGTTTATGGTGCCTAATCCAGAAAAGAATTGGGATTAGTATGACTATTCAAGTTT
805486 GTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAAA
775 GTCTTATTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAAA
* * *
805551 ACCATAGCATCAATGTCATTTATCCTAATGAGGGGATTATGTTTTTGGTTCCTAATCTTAAAAAG
840 ACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAATATGTTTTTGGTTCCTAATCTTAAAAAG
* **
805616 AATGGAGACTGTTACGAGAATTGATGCTTGTCTTATGTAAGG
905 AATGGAGACTGTTATGAGAATCAATGCTTGTCTTATGTAAGG
* * *
805658 GATGAATTTTGATTTTATGGAAAATCACATGAAGAAAAGATTTCCTTGCAAAAGAAAATGATCAA
1 GATGAACTTTGATTTTAAGGAAAAT-ACATGAAGAAAAGATTTCCATGCAAAAGAAAATGATCAA
* *
805723 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAACGAATGAATATCATT
65 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCATT
* *
805788 ACT-AATCCAAGTTTGTCTTATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTAGGAAGAAA
130 ACTGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTAGGAAGAAA
*
805852 GCCTTTCTTGCGATACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAACTTTATGGTGC
195 GCCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAACTTTATGGTGC
* * *
805917 CTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTGAGAGACAAACTT
260 CTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
805982 TGATTCGACCAAAAACTGTTGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGTCATGTA
325 TGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGTCATGTA
* * * * *
806047 CCCTAATGAAGGGAATGTGTTCTTGGTTCCCACTATTGAAAAGA--ATGGAGTCTATGATGAGAA
390 CCCTAATGAAGGGAATGTGTT-TTGGTTTCCAATCTTGAAAAGAGCAT-GAGACTATCATGAGAA
806110 TTA-ATGCTTGCCTTATTTAAGG
453 -TAGATGCTTGCCTTATTTAAGG
806132 CATTTATAGT
Statistics
Matches: 2886, Mismatches: 342, Indels: 183
0.85 0.10 0.05
Matches are distributed among these distances:
944 112 0.04
945 380 0.13
946 269 0.09
947 14 0.00
948 19 0.01
949 455 0.16
950 1244 0.43
951 296 0.10
952 97 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (946 bp):
GATGAACTTTGATTTTAAGGAAAATACATGAAGAAAAGATTTCCATGCAAAAGAAAATGATCAAT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCATTA
CTGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTATAAAAATTGGTAGGAAGAAAG
CCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAACTTTATGGTGCC
TAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
GATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTTTTATGACACCAAAGCATCAATGTCATGTAC
CCTAATGAAGGGAATGTGTTTTGGTTTCCAATCTTGAAAAGAGCATGAGACTATCATGAGAATAG
ATGCTTGCCTTATTTAAGGGATAAATTTTATTTTAAGGAAAATAGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
AATAAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGTACGAACTTAGACTTTACC
AAAATTGGCAAGAAAAAGCCCTTTTTACGAAACCAAAGCATCAATATCGTCTATCCTAAGAGAAG
AATATGTTTATGGTGCCTAATCCAGAAAAGAATTGGGATTAGTATGACTATTCAAGTTTGTCTTA
TTTAAGAGACAAACATTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAAAACCAAA
GCATCAATGTCATGTATCCTAATGAGGGGAATATGTTTTTGGTTCCTAATCTTAAAAAGAATGGA
GACTGTTATGAGAATCAATGCTTGTCTTATGTAAGG
Found at i:807675 original size:476 final size:474
Alignment explanation
Indices: 806134--807790 Score: 1875
Period size: 476 Copynumber: 3.5 Consensus size: 474
806124 ATTTAAGGCA
* * * *
806134 TTTATAGTGCCTAATCAAAAAATGAATAAAGATCGTTACTAGAATCCATTTTTGTCTTATGTGAG
1 TTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATGAGAG
* * * ** * *
806199 GCCCGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCGTTT-TTGTGAAACCAGAGCATCGA
66 GCACAAACTTAGACTTTACAAAAATT-GTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAA
* ** *
806263 TATCATCTATCCTAATGAGAAAACTATGTTGGTGGTGCCTAATCCTGAAAATAATGGGGATTAGT
130 TATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * * *
806328 ATGACTATTTATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAA
195 ATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTATATCAAAAATGGAGGAAAGAA
* * * * * *
806393 AAGCTTTTCTTGCTACACCAAAGCATCAATGTCATGTATCCTATTTAAAGGAATGTGTTCTCGGT
260 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * * * *
806458 TCCCAATCTTGAAAAGAATGGAGATTGTCATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAT
325 TCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGTTTGCCTTATTTAAGAGATGAAC
* * ** *
806523 TTTTATATCAAGGAAAATCTGGCAAAGAAAAGATTTTCATGCAAAAGATAATCATCAATATCATT
390 TTTTATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATT
806588 TATCCTAATGAGGAGAATGTG
454 TATCCTAATGAGGAGAATGTG
* * ** *
806609 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGGATCCATGTTTGTCTTATTTGTG
1 TTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATGAGAG
* * ** **
806674 GCACAAACTTAAACTTTATAAAAATTG-GGACGAAGAAAGCCTTTCCAGTGAAACCAAAGCATCA
66 GCACAAACTTAGACTTTACAAAAATTGTGG--GAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
* * * * * *
806738 ATTTCATCTATCCTACTGAGAAGACTATGTTTATGGTGTCTTATCCT-AAACAGAATGGAGACTA
129 ATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTA
* * ** **
806802 GTATAACTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTATATCAAAAAAACGATATAA
193 GTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTATATC-AAAAATGGA-GGAA
* * * * * *
806867 AG-AAAGCCTTTTCTTGTGACACTATAGCAT-AATGCCATCTATGCTAATGAAGGGAATGTGTTT
256 AGAAAAG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * * *
806930 TTGGTTCCCAATCTTGAAAACAATTGAGACTATTATGAGAATCAATGTTTACCTTATTTAA-AGG
320 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGTTTGCCTTATTTAAGA-G
* * *
806994 ATAAACTTTTTATTTTAAGGAAAATAAGGCAAAGAAATA-ACTTTCATGCAAAAGAAAAAT-GTA
384 ATGAAC-TTTTATTTTAAGGAAAATAAGGCAAAGAAA-AGA-TTTCATGCAAAAG-AAAATCATC
807057 AATAGTC-TTTATCCTAATGAGGAGAATGTG
445 AATA-TCATTTATCCTAATGAGGAGAATGTG
* * * * **
807087 TTTATAGTGCCTTATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATGAGAG
* * * * *
807152 AC-CTGAACTTAGACTTTACAAAAATTGGGAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATTA
66 GCAC-AAACTTAGACTTTACAAAAATTGTG-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
* * *
807216 AAATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAG
129 ATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * *
807281 TATAACTATTCATGTTTGTCTTCTTAAAGAGACAAACTTTAACTT-TATCAAAAATGGAGGAAAG
194 TATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTATATCAAAAATGGAGGAAAG
*
807345 AAAAGCTTTTCTTGCGACACCAAAGAATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
258 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
* * * * * * * *
807410 GTTCCCATTATTGAATAGAATGGACACTGTTACGAGAATCAATTTTTGGCTTGTTTAAGAGATGA
323 GTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGTTTGCCTTATTTAAGAGATGA
* * * * * *
807475 ACTTTGATTTTAAGAAAAATAGGGCATAGAAAAGATTTCCACGCAAAAGAAAATCTTCAATATCA
388 ACTTTTATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCA
* * *
807540 ATTATCTTAATGAGGAGAATGTT
452 TTTATCCTAATGAGGAGAATGTG
* * * *
807563 TTTAAAGTGCCTAATCACAAAATAAATAAAGATCCTTACTAGAATCCATTTTTGTCTCT-TGAGA
1 TTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCT-TATGAGA
* *
807627 GGCACAAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCATTTCTTGCAAAACCAAAGCATTA
65 GGCACAAACTTAGACTTTACAAAAATT-GTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
*** * * * * *
807692 ATATTGCCTATCCCT-ATGAAAAGACTATGTTTATGGTGCCGAATCGTAAAAAGAATGAGGATTT
129 ATATCATCTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA-TT
** *
807756 A-TATGTCTATTCATGTTTGTCTTTTTTAAGAGACA
192 AGTATAACTATTCATGTTTGTCTTATTTAAGAGACA
807791 CTAAAGCTTT
Statistics
Matches: 996, Mismatches: 157, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
473 2 0.00
474 1 0.00
475 106 0.11
476 380 0.38
477 198 0.20
478 295 0.30
479 13 0.01
480 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (474 bp):
TTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATGAGAG
GCACAAACTTAGACTTTACAAAAATTGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
ATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
TAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTATATCAAAAATGGAGGAAAGAAA
AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
CCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGTTTGCCTTATTTAAGAGATGAACT
TTTATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAGAATGTG
Found at i:810070 original size:13 final size:13
Alignment explanation
Indices: 810052--810109 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
810042 CAATTCATCA
810052 TGTATCGATACAT
1 TGTATCGATACAT
*
810065 TGTATCGATACAA
1 TGTATCGATACAT
*
810078 TG--TC-CT--A-
1 TGTATCGATACAT
810085 TGTATCGATACAT
1 TGTATCGATACAT
810098 TGTATCGATACA
1 TGTATCGATACA
810110 ATGTCCTATG
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
7 2 0.06
8 1 0.03
9 2 0.06
10 2 0.06
11 2 0.06
12 1 0.03
13 26 0.72
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:810075 original size:33 final size:33
Alignment explanation
Indices: 810032--810129 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
810022 TTACAGGCAA
* *
810032 TGTATTGATACAAT-TCATCATGTATCGATACAT
1 TGTATCGATACAATGTCCT-ATGTATCGATACAT
810065 TGTATCGATACAATGTCCTATGTATCGATACAT
1 TGTATCGATACAATGTCCTATGTATCGATACAT
810098 TGTATCGATACAATGTCCTATGTATCGATACA
1 TGTATCGATACAATGTCCTATGTATCGATACA
810130 AACAGTGGTA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 59 0.95
34 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTCCTATGTATCGATACAT
Found at i:810090 original size:20 final size:20
Alignment explanation
Indices: 810065--810130 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
810055 ATCGATACAT
810065 TGTATCGATACAATGTCCTA
1 TGTATCGATACAATGTCCTA
810085 TGTATCGATAC-A-----T-
1 TGTATCGATACAATGTCCTA
810098 TGTATCGATACAATGTCCTA
1 TGTATCGATACAATGTCCTA
810118 TGTATCGATACAA
1 TGTATCGATACAA
810131 ACAGTGGTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
14 2 0.05
19 2 0.05
20 24 0.62
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGTCCTA
Found at i:811636 original size:474 final size:474
Alignment explanation
Indices: 810508--811867 Score: 1910
Period size: 474 Copynumber: 2.9 Consensus size: 474
810498 CTAATAACAT
* * * * *
810508 TTAGGATACATGACATTGACGCTTTGATGTTGCAGGGGAAGCTTTTCTTTCCACCGTTATTGAAA
1 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAAA
* *
810573 GAATCAAAGTTTGTGTCTTAAATAAGACAAATGTGAATACTCATACCAATCCCCATTCTCTTAAG
66 GAATCAAAG-TTGTGTCTTAAATAAGACAAATATGAATACTCATACAAATCCCCATTCTCTTAAG
* * *
810638 GATTATGCATCATAAACATAGTTTTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCCAG
130 GATTATGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCAAG
* * * *
810703 AAAAGCTCTCTTCCCACCAATATTTGTAATGTCTAAGTTCGTGCCTCAAAAAAGACAAACGCGGA
195 AAAAGCTTTCTTCCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGTGGA
* * * * * *
810768 TTCTGGCAATGATCTTAATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTACGATT
260 TTCTAGCAAGGATCTTAATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATA
* * *
810833 AATGATATTGATGATTTTTGTTTGCATGAAAATCTTTTCATTGTCCTCTTTTCCTAAAAATCAAA
325 AATGATATTGATGATTTTT-TTTGCATGAAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAA
* * * *
810898 GTTTATCTCCCAAATAAGGCAACCATTGGTTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGA
389 GTTTATCTCCCAAATAAGGCAAACATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGA
810963 ACCAAAAACACATTCCCTTCA
454 ACCAAAAACACATTCCCTTCA
* * *
810984 TTAGGATACATGACATT-ATTGCCTTGGTGTCGCAAGAGAAGCTTTTCTTTCCGCCGTTATTGAT
1 TTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAA
* * * * * * * * *
811048 AGAATCAAAG-TGTGTCTTGTAAATAAAAGAAATATGAATACTCAAACTAGTCCCTATTTTTTTC
65 AGAATCAAAGTTGTGTC-T-TAAATAAGACAAATATGAATACTCATACAAATCCCCATTCTCTTA
* * * *
811112 AGGATTAGGCACCGTAAACCTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCAG-
128 AGGATTATGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTC-GC
* *
811176 AAGAAACGCTTTCTTCCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACAT
192 AAGAAAAGCTTTCTTCCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGT
** *
811241 GGATTCTAGTGAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
257 GGATTCTAGCAAGGATCTTAATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
* *
811306 ATAAATGATATTGATGGTTTTTTTTCCATGAAAATC-TTTCTTTG-CCTCATTTTCCTTAAAATC
322 ATAAATGATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTC-TTTTCCTTAAAATC
* **
811369 AATA-TTTGTC-CTTTAAATAAGGCAAACATTGATTCTCATAACAGTCTCCATTCTTTTCAAGAT
386 AA-AGTTTATCTC-CCAAATAAGGCAAACATTGATTCTCATAACAGTCTCCATTCTTTTCAAGAT
811432 TAGGAACCAAAAACACATTCCCTTCA
449 TAGGAACCAAAAACACATTCCCTTCA
* *
811458 TTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCATTATTGAAA
1 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAAA
* * * *
811523 GAACCAAAGCTTGTGTCTTAAATAAGACAAACATGACTACTCATACAAATCCCCATTCCCTTAAG
66 GAATCAAAG-TTGTGTCTTAAATAAGACAAATATGAATACTCATACAAATCCCCATTCTCTTAAG
* * *
811588 GATTATGCACCATAAACATTGTCTTCTCATAAAGATATACGTTATTGATGCTTTGGTTTCGCAAG
130 GATTATGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCAAG
* ** *
811653 AAAAGCTTTTTTTACACCAACATTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGTGGA
195 AAAAGCTTTCTTCCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGTGGA
811718 TTCTAGCAATGG-TCTTAATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGAT
260 TTCTAGCAA-GGATCTTAATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGAT
* * *
811782 AAATGATATTGTTGATTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCG
324 AAATGATATTGATGA--TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCA
811847 AAGTTTATC-CCCTAAATAAGG
387 AAGTTTATCTCCC-AAATAAGG
811868 TGAAAGCTCA
Statistics
Matches: 773, Mismatches: 93, Indels: 35
0.86 0.10 0.04
Matches are distributed among these distances:
473 6 0.01
474 391 0.51
475 20 0.03
476 314 0.41
477 38 0.05
478 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAAA
GAATCAAAGTTGTGTCTTAAATAAGACAAATATGAATACTCATACAAATCCCCATTCTCTTAAGG
ATTATGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCAAGA
AAAGCTTTCTTCCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGTGGAT
TCTAGCAAGGATCTTAATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAA
ATGATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAGT
TTATCTCCCAAATAAGGCAAACATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAC
CAAAAACACATTCCCTTCA
Found at i:811792 original size:158 final size:156
Alignment explanation
Indices: 810638--811792 Score: 469
Period size: 159 Copynumber: 7.3 Consensus size: 156
810628 TTCTCTTAAG
* * * * * * *
810638 GATTATGCATCATAAACATAGTT-TTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCCA
1 GATTAGGCACCATAAACATA-TTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAA
* * * * **
810702 GAAAAGCTCTCTTCCCACCAATATTTGTAATGTCTAAGTTCGTGCCTCAAAAAAGACAAACGCGG
65 GAAAAGCTTTCTTTCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGG
* * ** *
810767 ATTCTGGCAATGATCTTAATTTATTTTGT
130 ATTCT-ACAA-GGTCTCCATTCATTTTGT
* * * * * * *
810796 GATTAGGCACTATAAACACATTCTCCTCATTACGATTAATGATATTGATGATTTTTGTTT-GCAT
1 GATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTGATG-CTTTGGTTTCGCAA
* * * * * ** * *
810860 GAAAATCTTTTCATTGTCC-TC--T-TTTCCTAAAAATCAAAGTTTAT-CTCCCAAATAAGGCAA
65 GAAAAGC-TTTC-TT-TCCACCAATATTT-GT-AAAGTCTAAGTTCGTGC-CTCAAATAAGACAA
* * **
810920 CCATTGG-TTCT-CGTAATAGTCTCCATTC-TTTTCAA
124 ACA-TGGATTCTAC--AA-GGTCTCCATTCATTTT-GT
* * * * * * *
810955 GATTAGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATT-ATTGCCTTGGTGTCGCA
1 GATTAGGCACCATAAACATATTCTCC-TCATTAGGATAAATGATATTGA-TGCTTTGGTTTCGCA
* * ** * * * * *
811018 AGAGAAGCTTTTCTTTCCGCCGTTA-TTGATAGAA-TCAAAG-T-GTGTCTTGTAAATAAAAGAA
64 AGAAAAGC-TTTCTTTCCACCAATATTTG-TA-AAGTCTAAGTTCGTG-CCT-CAAATAAGACAA
* * * * *
811079 ATATGAATACT-CAAACTAGTC-CCTATT-TTTTTCAG-
124 ACATGGATTCTAC-AA--GGTCTCC-ATTCATTTT--GT
* * * * * * *
811114 GATTAGGCACCGTAAACCTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCAG-AA
1 GATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTC-GCAA
* *
811178 GAAACGCTTTCTTCCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAA-AGAGACAAACATG
65 GAAAAGCTTTCTTTCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAATA-AGACAAACATG
** *
811242 GATTCTAGTGAGGATCTTCATTCATTTTGT
129 GATTCTA-CAAGG-TCTCCATTCATTTTGT
* * ** *
811272 GATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTTTTC-CATG
1 GATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAG
* * * * * * * *
811336 AAAATCTTTCTTTGCC-TC-AT-TTTCCTTAAAATC-AATATTTGT-CCTTTAAATAAGGCAAAC
66 AAAAGCTTTCTTT-CCACCAATATTT--GTAAAGTCTAA-GTTCGTGCC-TCAAATAAGACAAAC
* * * **
811396 ATTGATTCTCATAACAGTCTCCATTC-TTTTCAA
126 ATGGATTCT-ACAA-GGTCTCCATTCATTTT-GT
* * * * * * *
811429 GATTAGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAA
1 GATTAGGCACCATAAACATATTCTCC-TCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAA
* * * * * *
811493 GAGAAGCTTTTCTTTCCACCATTA-TTG-AAAGAACCAAAGCTT-GTGTCTTAAATAAGACAAAC
65 GAAAAGC-TTTCTTTCCACCAATATTTGTAAAG--TCTAAG-TTCGTGCCTCAAATAAGACAAAC
* * * **
811555 AT-GACTACTCATACAA-ATCCCCATTCCCTTAAG-
126 ATGGA-T--TC-TACAAGGTCTCCATT-CATTTTGT
* * * * * * *
811588 GATTATGCACCATAAACAT-TGTCTTCTCATAAAGATATACGTTATTGATGCTTTGGTTTCGCAA
1 GATTAGGCACCATAAACATAT-TCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAA
* * * *
811652 GAAAAGCTTTTTTTACACCAACATTTGTAAAGTCTAAGTTCGTGCCTCAAA-AGAGACAAACGTG
65 GAAAAGCTTTCTTTCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAATA-AGACAAACATG
**
811716 GATTCTAGCAATGGTCTTAATTCATTTTGT
129 GATTCTA-CAA-GGTCTCCATTCATTTTGT
*
811746 GATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTG
1 GATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTG
811793 TTGATTTTTT
Statistics
Matches: 724, Mismatches: 191, Indels: 164
0.67 0.18 0.15
Matches are distributed among these distances:
155 5 0.01
156 17 0.02
157 124 0.17
158 251 0.35
159 286 0.40
160 31 0.04
161 9 0.01
162 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (156 bp):
GATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAG
AAAAGCTTTCTTTCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGA
TTCTACAAGGTCTCCATTCATTTTGT
Found at i:812647 original size:33 final size:33
Alignment explanation
Indices: 812605--812706 Score: 134
Period size: 33 Copynumber: 3.1 Consensus size: 33
812595 CCGTTACAAG
* *
812605 CAATGTATCGATACATTTCATCATATATCGATT
1 CAATGTATCGATACATTTCAACATATATCGATA
*
812638 CAATGTATCGATACATTTCAACATGTATCGATA
1 CAATGTATCGATACATTTCAACATATATCGATA
* * *
812671 CAATTTATCGATACATTAT-ACCATGTATCGATA
1 CAATGTATCGATACATT-TCAACATATATCGATA
812704 CAA
1 CAA
812707 ACAATGGTAG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 62 0.98
34 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATTTCAACATATATCGATA
Found at i:812691 original size:20 final size:20
Alignment explanation
Indices: 812668--812705 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
812658 ACATGTATCG
*
812668 ATACAATTTATCGATACATT
1 ATACAATGTATCGATACATT
*
812688 ATACCATGTATCGATACA
1 ATACAATGTATCGATACA
812706 AACAATGGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (20 bp):
ATACAATGTATCGATACATT
Found at i:812704 original size:13 final size:13
Alignment explanation
Indices: 812630--812685 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 13
812620 TTTCATCATA
*
812630 TATCGATTCAATG
1 TATCGATACAATG
812643 TATCGATAC-AT-
1 TATCGATACAATG
812654 T-TC-A-AC-ATG
1 TATCGATACAATG
*
812663 TATCGATACAATT
1 TATCGATACAATG
812676 TATCGATACA
1 TATCGATACA
812686 TTATACCATG
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
8 4 0.11
9 2 0.06
10 4 0.11
11 2 0.06
12 4 0.11
13 20 0.56
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:812780 original size:19 final size:20
Alignment explanation
Indices: 812734--812807 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
812724 ACTGCCAGTT
*
812734 TCATGTATCGATACAAT-TG
1 TCATGTATCGATACAATGAG
812753 TCCATGTATCGATACAATGAG
1 T-CATGTATCGATACAATGAG
*
812774 T-ATGTATCGATACAAAGCA-
1 TCATGTATCGATACAATG-AG
*
812793 TAATGTATCGATACA
1 TCATGTATCGATACA
812808 TCTAGGTGTG
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
19 17 0.35
20 30 0.61
21 2 0.04
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (20 bp):
TCATGTATCGATACAATGAG
Found at i:813641 original size:13 final size:13
Alignment explanation
Indices: 813623--813653 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
813613 TCCTAATAAG
813623 AAGACTTAAATCT
1 AAGACTTAAATCT
813636 AAGAC-TAAATCT
1 AAGACTTAAATCT
813648 AAGACT
1 AAGACT
813654 CGTCGTCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (13 bp):
AAGACTTAAATCT
Found at i:821417 original size:21 final size:21
Alignment explanation
Indices: 821392--821439 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
821382 AACTCGTTTC
*
821392 TTTTCTCCTCTAATTCATTTA
1 TTTTCTCCTCTAATTCACTTA
**
821413 TTTTCTTTTCTAATTCACTTA
1 TTTTCTCCTCTAATTCACTTA
*
821434 ATTTCT
1 TTTTCT
821440 TTTCAAGAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTCTCCTCTAATTCACTTA
Found at i:821440 original size:21 final size:21
Alignment explanation
Indices: 821400--821443 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
821390 TCTTTTCTCC
* *
821400 TCTAATTCATTTATTTTCTTT
1 TCTAATTCACTTAATTTCTTT
821421 TCTAATTCACTTAATTTCTTT
1 TCTAATTCACTTAATTTCTTT
821442 TC
1 TC
821444 AAGAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.61
Consensus pattern (21 bp):
TCTAATTCACTTAATTTCTTT
Found at i:822931 original size:20 final size:20
Alignment explanation
Indices: 822906--822943 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
822896 TTTCAACATG
822906 AATGTATCGACACATTCTTC
1 AATGTATCGACACATTCTTC
*
822926 AATGTATCGATACATTCT
1 AATGTATCGACACATTCT
822944 GTCTTTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (20 bp):
AATGTATCGACACATTCTTC
Found at i:824335 original size:33 final size:33
Alignment explanation
Indices: 824271--824336 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
824261 GCCAAGGAAA
* **
824271 TGTATCGATACATTATTCAATATATTGATACAT
1 TGTATCGATACATTAATCAATATATCAATACAT
** *
824304 TGTATCGATACATTAATCTTTGTATCAATACAT
1 TGTATCGATACATTAATCAATATATCAATACAT
824337 CTGAGAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTAATCAATATATCAATACAT
Found at i:829229 original size:21 final size:21
Alignment explanation
Indices: 829196--829236 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
829186 CTAAGTAAAA
829196 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
829217 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
829237 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:829411 original size:53 final size:53
Alignment explanation
Indices: 829317--829465 Score: 244
Period size: 53 Copynumber: 2.8 Consensus size: 53
829307 AAATTGCATA
* * * *
829317 GTATCGATACACACAAATATGTATCGATATAGGACATTGGCAGTAGCCATATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
829371 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
*
829424 GTATCGATACACAAAATATGTATCGATACAGGTCACTGGCAG
1 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAG
829466 GACACTATTC
Statistics
Matches: 90, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 76 0.84
54 14 0.16
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
Found at i:829529 original size:13 final size:13
Alignment explanation
Indices: 829511--829535 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
829501 TCACTATTCA
829511 TGTATCGATACAG
1 TGTATCGATACAG
829524 TGTATCGATACA
1 TGTATCGATACA
829536 TCATAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:833414 original size:28 final size:29
Alignment explanation
Indices: 833382--833440 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
833372 ATAAGAAACA
833382 AAAAAAAAAGAAAAG-A-AAAATGAAAAAG
1 AAAAAAAAA-AAAAGCATAAAATGAAAAAG
* *
833410 -AAAAAAGAAAAAGCATGAAATGAAAAAG
1 AAAAAAAAAAAAAGCATAAAATGAAAAAG
833438 AAA
1 AAA
833441 GTGCAGATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
26 5 0.19
27 8 0.31
28 11 0.42
29 2 0.08
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (29 bp):
AAAAAAAAAAAAAGCATAAAATGAAAAAG
Found at i:833440 original size:6 final size:6
Alignment explanation
Indices: 833381--833422 Score: 52
Period size: 7 Copynumber: 7.0 Consensus size: 6
833371 AATAAGAAAC
833381 AAAAA- AAAAAG -AAAAG AAAAATG AAAAAG AAAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAA-G AAAAAG -AAAAAG AAAAAG
833423 CATGAAATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
5 10 0.30
6 11 0.33
7 12 0.36
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:833479 original size:19 final size:20
Alignment explanation
Indices: 833455--833497 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
833445 AGATAGTAAG
833455 AAAAAAG-AGAAAAAATGAA
1 AAAAAAGAAGAAAAAATGAA
833474 AAAAAAGAAGAAAAAATGAA
1 AAAAAAGAAGAAAAAATGAA
833494 AAAA
1 AAAA
833498 TACTATATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAAAAGAAGAAAAAATGAA
Found at i:833496 original size:9 final size:10
Alignment explanation
Indices: 833453--833497 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
833443 GCAGATAGTA
833453 AGAAAAAA-G
1 AGAAAAAATG
833462 AGAAAAAATG
1 AGAAAAAATG
*
833472 A-AAAAAAAG
1 AGAAAAAATG
833481 AAGAAAAAATG
1 -AGAAAAAATG
833492 A-AAAAA
1 AGAAAAA
833498 TACTATATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 20 0.65
10 4 0.13
11 7 0.23
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (10 bp):
AGAAAAAATG
Found at i:834294 original size:13 final size:13
Alignment explanation
Indices: 834276--834306 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
834266 ACATTTCTTT
834276 ATGTATCGATACA
1 ATGTATCGATACA
834289 ATGTATCGATACA
1 ATGTATCGATACA
*
834302 TTGTA
1 ATGTA
834307 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:834977 original size:16 final size:17
Alignment explanation
Indices: 834956--834990 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
834946 GTTTTCATTT
834956 TTCT-CCCCTTAAAAAA
1 TTCTCCCCCTTAAAAAA
*
834972 TTCTCCCCCTTAAACAA
1 TTCTCCCCCTTAAAAAA
834989 TT
1 TT
834991 ATCTTCTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (17 bp):
TTCTCCCCCTTAAAAAA
Found at i:836863 original size:13 final size:13
Alignment explanation
Indices: 836845--836873 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
836835 AAATAATACC
836845 CAATGTATCGATA
1 CAATGTATCGATA
836858 CAATGTATCGATA
1 CAATGTATCGATA
836871 CAA
1 CAA
836874 GGAATGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:843130 original size:18 final size:19
Alignment explanation
Indices: 843107--843186 Score: 63
Period size: 20 Copynumber: 4.1 Consensus size: 19
843097 TAGCTATTGT
*
843107 CAATTT-CATGTTTCGATA
1 CAATTTGCATGTATCGATA
843125 CAATTTGGCCATGTATCGATA
1 CAATTT-G-CATGTATCGATA
***
843146 CAATGAACATGTATCGATA
1 CAATTTGCATGTATCGATA
***
843165 CAAAGCAGCATGTATCGATA
1 C-AATTTGCATGTATCGATA
843185 CA
1 CA
843187 TCTGGGTGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.12
19 14 0.27
20 16 0.31
21 15 0.29
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (19 bp):
CAATTTGCATGTATCGATA
Found at i:843158 original size:19 final size:20
Alignment explanation
Indices: 843134--843186 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
843124 ACAATTTGGC
*
843134 CATGTATCGATACAATG-AA
1 CATGTATCGATACAAAGCAA
*
843153 CATGTATCGATACAAAGCAG
1 CATGTATCGATACAAAGCAA
843173 CATGTATCGATACA
1 CATGTATCGATACA
843187 TCTGGGTGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (20 bp):
CATGTATCGATACAAAGCAA
Found at i:849021 original size:28 final size:27
Alignment explanation
Indices: 848960--849041 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 27
848950 TTTTGGAGAT
*
848960 AATAACGGGGTTGGAGTGTTCCCTCG--GA
1 AATAAC-GGGTTGGAGT-ATCCC-CGATGA
*
848988 AGTAACAGGGTTGGAGTATCCCCGATGA
1 AATAAC-GGGTTGGAGTATCCCCGATGA
*
849016 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACG-GGTTGGAGTATCCCCGAT
849042 TGTGAAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
26 2 0.04
27 5 0.11
28 39 0.85
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (27 bp):
AATAACGGGTTGGAGTATCCCCGATGA
Found at i:849183 original size:51 final size:51
Alignment explanation
Indices: 849021--849193 Score: 204
Period size: 52 Copynumber: 3.4 Consensus size: 51
849011 GATGAAATAA
* *
849021 CGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGGAAATAAAAT
* * * * *
849073 CG-GTGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAC
1 CGAG-GTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTGGAAATAAAAT
* *** *
849125 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGT
1 CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAAT
849176 CGAGGTTGGAGTATCCCC
1 CGAGGTTGGAGTATCCCC
849194 TCGGAAATAA
Statistics
Matches: 101, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
51 38 0.38
52 52 0.51
53 11 0.11
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAAT
Found at i:849302 original size:54 final size:51
Alignment explanation
Indices: 849235--849369 Score: 150
Period size: 51 Copynumber: 2.6 Consensus size: 51
849225 GATTAACGGG
*
849235 GTTGGAATGTCCCCGATTGTGAAGAAATTGATGTTTTTTGGAAA-TAAAATCGGA
1 GTTGGAATATCCCCGATTGTG-AGAAATTGATG--TTTT-GAAAGTAAAATCGGA
* * *
849289 GTTGGAGTATCCCCGATTAT-AGAAAATTAATGTTTTGAAAGTAAAATCGGA
1 GTTGGAATATCCCCGATTGTGAG-AAATTGATGTTTTGAAAGTAAAATCGGA
*
849340 GTTGGAATATCCTCGATTGTG-GAGAATTGA
1 GTTGGAATATCCCCGATTGTGAGA-AATTGA
849370 GCAACTCAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
50 5 0.07
51 37 0.54
52 2 0.03
53 8 0.12
54 17 0.25
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (51 bp):
GTTGGAATATCCCCGATTGTGAGAAATTGATGTTTTGAAAGTAAAATCGGA
Found at i:849316 original size:211 final size:211
Alignment explanation
Indices: 848968--849357 Score: 570
Period size: 211 Copynumber: 1.8 Consensus size: 211
848958 ATAATAACGG
* * * *
848968 GGTTGGAGTGTTCCCTCGGAAGTAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGT
1 GGTTGGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAAT
* *
849033 ATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATCCCCGATTAAA
66 ATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA
** * *
849098 GGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATT
131 GGAAAATTAATGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGAAAAATCAATATT
849163 TTGGAAATAAAGTCGA
196 TTGGAAATAAAGTCGA
* * *
849179 GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACGGGGTTGGAAT
1 GGTTGGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAAT
*
849243 GTCCCCGATTGTGAAGAAATTGATGT-TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATT
66 ATCCCCGATTGTGAA-AAATTG--GTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATT
* * * *
849307 ATA-GAAAATTAATGTTTTGAAAGTAAAATCGGAGTTGGAATATCCTCGATT
128 AAAGGAAAATTAATGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATT
849358 GTGGAGAATT
Statistics
Matches: 158, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
210 27 0.17
211 90 0.57
212 39 0.25
213 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (211 bp):
GGTTGGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAAT
ATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA
GGAAAATTAATGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGAAAAATCAATATT
TTGGAAATAAAGTCGA
Found at i:851730 original size:13 final size:13
Alignment explanation
Indices: 851712--851737 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
851702 ACAAAGATCC
851712 ATGTATCGATACA
1 ATGTATCGATACA
851725 ATGTATCGATACA
1 ATGTATCGATACA
851738 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:851733 original size:33 final size:33
Alignment explanation
Indices: 851691--851757 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
851681 AAAATTTCCA
***
851691 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
851724 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
851757 A
1 A
851758 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:851801 original size:19 final size:18
Alignment explanation
Indices: 851777--851844 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
851767 CAGTAGCTAA
851777 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
851796 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
851811 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
851828 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
851845 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:851817 original size:13 final size:13
Alignment explanation
Indices: 851799--851823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
851789 ACAATACTTA
851799 TGTATCGATACAT
1 TGTATCGATACAT
851812 TGTATCGATACA
1 TGTATCGATACA
851824 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:851821 original size:32 final size:32
Alignment explanation
Indices: 851780--851842 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
851770 TAGCTAATTA
*
851780 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
851812 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
851843 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:851924 original size:21 final size:21
Alignment explanation
Indices: 851900--851977 Score: 138
Period size: 21 Copynumber: 3.7 Consensus size: 21
851890 CATTTGTAGG
851900 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
851921 ATGTATCGACACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
851942 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
851963 ATGTATCGATACATT
1 ATGTATCGATACATT
851978 TGGAAATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:852010 original size:18 final size:17
Alignment explanation
Indices: 851988--852021 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
851978 TGGAAATTTT
851988 TTTTTTTTTTTTTCAAA
1 TTTTTTTTTTTTTCAAA
852005 TTTTTTTTTTTTTCAAA
1 TTTTTTTTTTTTTCAAA
852022 CACTTTATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTTTTTTTTTCAAA
Found at i:853814 original size:20 final size:20
Alignment explanation
Indices: 853789--853841 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
853779 GTTACAAGCT
853789 ATGTATCGATACATT-T-CTTC
1 ATGTATCGATACATTGTAC--C
853809 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
853829 ATGTATCGATACA
1 ATGTATCGATACA
853842 AATAGTGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 29 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:853916 original size:19 final size:19
Alignment explanation
Indices: 853871--853927 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
853861 CTGCCAGTTT
**
853871 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA--TGAA
853892 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
853911 CATGTATCAATACAATG
1 CATGTATCGATACAATG
853928 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.55
21 15 0.45
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:856244 original size:79 final size:79
Alignment explanation
Indices: 856119--856614 Score: 501
Period size: 79 Copynumber: 6.2 Consensus size: 79
856109 AATTTTATTT
* *
856119 ATCGGGGATACTCCAACCCCATCATTT-TCGAGGAGATACTCCAACCCCTTTTTTATTTCCAAAA
1 ATCGGGGATACTCCAACCCCATCATTTCT-GAGGGGATACTCCAACCCCATTTTTATTTCCAAAA
856183 TATCAAATTTTCACC
65 TATCAAATTTTCACC
* * * *
856198 ATCGGGGACACTCCAACCCCATCATTTCTGAGGGGAGACTCTAACCCCATTTTTATTTCAAAAAT
1 ATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAACCCCATTTTTATTTCCAAAAT
* *
856263 ATCGATTTTTCACC
66 ATCAAATTTTCACC
** * * * * ** *
856277 ATTTGGAATACTCTAACCCCATCATTTTTTAGGAAATACTCCAACCCCATTTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAACCCCATTTTTATTTCCAAAAT
856342 ATCAAATTTTCACC
66 ATCAAATTTTCACC
** * * *
856356 ATTAGGGATACTCCAACCCAAACATTTCTGAGGGGATACTCCAACCTCATTTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAACCCCATTTTTATTTCCAAAAT
* * *
856421 ATCGATTTTTCATC
66 ATCAAATTTTCACC
* ** * * * ** * *
856435 GTCGGGGATACTTTAACTCCATCATTACTGATGGGATACTCCAACCGCGTTTTTTACTTCCTAAA
1 ATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAACC-CCATTTTTATTTCCAAAA
*
856500 TGTCAAACTTTTCACC
65 TATCAAA-TTTTCACC
* * * *** * *
856516 A-CTGGGGATAGTCCAACCCCATTATTTCTGAGGGGATACTCTAACCTTGTTTTTACTTCAAAAA
1 ATC-GGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAACCCCATTTTTATTTC-CAAA
* *
856580 ATATCAAATTTTTTACT
64 ATATCAAA-TTTTCACC
*
856597 ATTGGGGATACTCCAACC
1 ATCGGGGATACTCCAACC
856615 TCATTTTTAC
Statistics
Matches: 336, Mismatches: 75, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
79 235 0.70
80 29 0.09
81 72 0.21
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAACCCCATTTTTATTTCCAAAAT
ATCAAATTTTCACC
Found at i:856414 original size:158 final size:158
Alignment explanation
Indices: 856119--856584 Score: 567
Period size: 158 Copynumber: 2.9 Consensus size: 158
856109 AATTTTATTT
* * * *
856119 ATCGGGGATACTCCAACCCCATCATTTTCGAGGAGATACTCCAACCCCTTTTTTATTTCCAAAAT
1 ATCGGGAATACTCTAACCCCATCATTTTTGAGGAGATACTCCAACCCCTTTTTTATTTCTAAAAT
* * * *
856184 ATCAAATTTTCACCATCGGGGACACTCCAACCCCATCATTTCTGAGGGGAGACTCTAACCCCATT
66 ATCAAATTTTCACCATTGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCTAACCTCATT
856249 TTTATTTCAAAAATATCGATTTTTCACC
131 TTTATTTCAAAAATATCGATTTTTCACC
** * * *
856277 ATTTGGAATACTCTAACCCCATCATTTTTTAGGAAATACTCCAACCCCATTTTTATTTCTAAAAT
1 ATCGGGAATACTCTAACCCCATCATTTTTGAGGAGATACTCCAACCCCTTTTTTATTTCTAAAAT
* * * *
856342 ATCAAATTTTCACCATTAGGGATACTCCAACCCAAACATTTCTGAGGGGATACTCCAACCTCATT
66 ATCAAATTTTCACCATTGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCTAACCTCATT
* *
856407 TTTATTTCCAAAATATCGATTTTTCATC
131 TTTATTTCAAAAATATCGATTTTTCACC
* * * * ** * *
856435 GTCGGGGATACTTTAACTCCATCATTACTGATGG-GATACTCCAACCGCGTTTTTTACTTCCT-A
1 ATCGGGAATACTCTAACCCCATCATTTTTGA-GGAGATACTCCAACC-CCTTTTTTA-TTTCTAA
* * * *
856498 AATGTCAAACTTTTCACCACTGGGGATAGTCCAACCCCATTATTTCTGAGGGGATACTCTAACCT
63 AATATCAAA-TTTTCACCATTGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCTAACCT
** *
856563 TGTTTTTACTTCAAAAAATATC
127 CATTTTTATTTC-AAAAATATC
856585 AAATTTTTTA
Statistics
Matches: 259, Mismatches: 44, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
158 172 0.66
159 18 0.07
160 61 0.24
161 8 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.34
Consensus pattern (158 bp):
ATCGGGAATACTCTAACCCCATCATTTTTGAGGAGATACTCCAACCCCTTTTTTATTTCTAAAAT
ATCAAATTTTCACCATTGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCTAACCTCATT
TTTATTTCAAAAATATCGATTTTTCACC
Found at i:856622 original size:134 final size:133
Alignment explanation
Indices: 856467--856725 Score: 342
Period size: 134 Copynumber: 1.9 Consensus size: 133
856457 CATTACTGAT
* * * * *
856467 GGGATACTCCAACCGCGTTTTTTACTTCC-TAAATGTCAAACTTTTCACCACTGGGGATAGTCCA
1 GGGATACTCCAACCGC-ATTTTTACTTCCAAAAATATCAAACTTTTCACCACTAGGGATACTCCA
* * **
856531 ACCCCATTATTTCTGAGGGGATACTCTAAC-CTTGTTTTTACTTCAAAAAATATCAAATTTTTTA
65 ACCCCATCATTTCTGAGGGGATACTCCAACTC-CATTTTTACTTC-AAAAATATCAAATTTTTTA
856595 CTATTG
128 CTATTG
* * * *
856601 GGGATACTCCAACCTCATTTTTACTTCCAAAAATATCGAATTTTTCACCATTAGGGATACTCCAA
1 GGGATACTCCAACCGCATTTTTACTTCCAAAAATATCAAACTTTTCACCACTAGGGATACTCCAA
* *
856666 CCCCATCATTTCTGAGGGGATACTCCAACTCCATTTTTACTTCCAAAATATCGAATTTTT
66 CCCCATCATTTCTGAGGGGATACTCCAACTCCATTTTTACTTCAAAAATATCAAATTTTT
856726 CATTATCAGA
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
133 26 0.24
134 81 0.75
135 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.36
Consensus pattern (133 bp):
GGGATACTCCAACCGCATTTTTACTTCCAAAAATATCAAACTTTTCACCACTAGGGATACTCCAA
CCCCATCATTTCTGAGGGGATACTCCAACTCCATTTTTACTTCAAAAATATCAAATTTTTTACTA
TTG
Found at i:856627 original size:53 final size:53
Alignment explanation
Indices: 856547--856667 Score: 170
Period size: 53 Copynumber: 2.3 Consensus size: 53
856537 TTATTTCTGA
* ** * *
856547 GGGGATACTCTAACCTTGTTTTTACTTCAAAAAATATCAAATTTTTTACTATT
1 GGGGATACTCCAACCTCATTTTTACTTCAAAAAATATCAAATTTTTCACCATT
* *
856600 GGGGATACTCCAACCTCATTTTTACTTCCAAAAATATCGAATTTTTCACCATT
1 GGGGATACTCCAACCTCATTTTTACTTCAAAAAATATCAAATTTTTCACCATT
*
856653 AGGGATACTCCAACC
1 GGGGATACTCCAACC
856668 CCATCATTTC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 60 1.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.36
Consensus pattern (53 bp):
GGGGATACTCCAACCTCATTTTTACTTCAAAAAATATCAAATTTTTCACCATT
Found at i:858524 original size:92 final size:90
Alignment explanation
Indices: 858297--858857 Score: 379
Period size: 89 Copynumber: 6.2 Consensus size: 90
858287 CAAAAGCTTT
* * *
858297 TAGATGGTATTAATGCATCACAAAGCCTGATTTCCTTGTG-GCAAAGGCA-CCGACCACACATTC
1 TAGATGGTATTGATGCATCACAAAGCCTAATTTCCTTG-GAGC-AAGGTATCCGACCACACATTC
* * *
858360 CTTAATCGTATCCTTCTT-TCCTAATCAC
64 C-TAATCATATCCTTTTTATCC-AACCAC
* * * * * **
858388 TAAATGGTATTGATTCATCATAGAA--CTCGATTTTCAAGGAGCAAGGATATCCCGACCACACAT
1 TAGATGGTATTGATGCATCACA-AAGCCT-AATTTCCTTGGAGCAAGG-TAT-CCGACCACACAT
*
858451 TCCCAATCATATCCTTTTTATCCAACCAC
62 TCCTAATCATATCCTTTTTATCCAACCAC
* *
858480 TAGATGGTATTGATGCATCATAAAGCCTAATTTCCTTGCG-GCAAGG--T-GGAACCCACACATT
1 TAGATGGTATTGATGCATCACAAAGCCTAATTTCCTTG-GAGCAAGGTATCCG-A-CCACACATT
*
858541 CCTAATCATAT-CTTTTTCATCCAACTAC
63 CCTAATCATATCCTTTTT-ATCCAACCAC
* * * * *
858569 TAGATGGTATTTG-TGCATCACAAAGCCTAATTTCCTTGGAGCAAGGT-GCAGCCCACATACTCC
1 TAGATGGTA-TTGATGCATCACAAAGCCTAATTTCCTTGGAGCAAGGTATCCGACCACACATTCC
** * *
858632 TAATCATATCCCCTTCATCTAACCAC
65 TAATCATATCCTTTTTATCCAACCAC
* * * *
858658 TAGATGGTATTGATGCATCACAAAGCCTAATTTCCTTAGG-GCAAAG--TGCGACCCATATATTC
1 TAGATGGTATTGATGCATCACAAAGCCTAATTTCCTT-GGAGCAAGGTATCCGA-CCACACATTC
* * *
858720 CCAATCATATTCC-CTTCA-CCTAACCAC
64 CTAATCATA-TCCTTTTTATCC-AACCAC
* ** * * * * *
858747 TAAATGGTATTGATATATCACAAAGTCTTATTTTCTTAGG-GCAAGGGTATCTCGATCACTCATT
1 TAGATGGTATTGATGCATCACAAAGCCTAATTTCCTT-GGAGCAA-GGTATC-CGACCACACATT
* *
858811 CCTAATCATATCCCTTTCTT-T-TAGCCAC
63 CCTAATCATAT-CCTTT-TTATCCAACCAC
* *
858839 TAGGTGATATTGATGCATC
1 TAGATGGTATTGATGCATC
858858 GTATGAACAC
Statistics
Matches: 376, Mismatches: 63, Indels: 61
0.75 0.13 0.12
Matches are distributed among these distances:
87 1 0.00
88 13 0.03
89 197 0.52
90 19 0.05
91 32 0.09
92 88 0.23
93 25 0.07
94 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (90 bp):
TAGATGGTATTGATGCATCACAAAGCCTAATTTCCTTGGAGCAAGGTATCCGACCACACATTCCT
AATCATATCCTTTTTATCCAACCAC
Found at i:859379 original size:35 final size:35
Alignment explanation
Indices: 859335--859601 Score: 282
Period size: 35 Copynumber: 7.6 Consensus size: 35
859325 GACCTAGTCA
* * ** *
859335 AACTCTTTTCATCATCATTTGGTTGTATTTGGTCG
1 AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
*
859370 AACTATTTTCATCATCGTTTGGCTACATCTGGTCG
1 AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
* * * *
859405 AACTCTTTTTCATCATCATTTGGCTGCATCTAGTTG
1 AACTC-TTTTCATCATCGTTTGGCTACATCTGGTCG
* * *
859441 AACACTTTTCATCATCGTTTAGCTACATCTGGTCA
1 AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
* * * *
859476 AACTCTTTTCATCATTGTTTGCCTACATTTGGTCA
1 AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
* ** * **
859511 AACTCTTTTCATTATTATTTAGCTGTATCTGGTCG
1 AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
* * * *
859546 AACACTTTCCATCATCGTTTGGCTATATCTGGTCA
1 AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
859581 AACTCTTTTCATCATCGTTTG
1 AACTCTTTTCATCATCGTTTG
859602 ATTGTATCGG
Statistics
Matches: 190, Mismatches: 41, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
35 160 0.84
36 30 0.16
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (35 bp):
AACTCTTTTCATCATCGTTTGGCTACATCTGGTCG
Found at i:859580 original size:105 final size:106
Alignment explanation
Indices: 859328--859601 Score: 352
Period size: 105 Copynumber: 2.6 Consensus size: 106
859318 GCATTAGGAC
* * * * * * * * *
859328 CTAGTCAAACTCTTTTCATCATCATTTGGTTGTATTTGGTCGAACTATTTTCATCATCGTTTGGC
1 CTAGTCGAACACTTTTCATCATCGTTTGGCTATATCTGGTCAAACTCTTTTCATCATCGTTTGCC
* *
859393 TACATCTGGTCGAACTCTTTTTCATCATCATTTGGCTGCAT
66 TACATCTGGTCAAACTCTTTTTCATCATCATTTAGCTGCAT
* * * *
859434 CTAGTTGAACACTTTTCATCATCGTTTAGCTACATCTGGTCAAACTCTTTTCATCATTGTTTGCC
1 CTAGTCGAACACTTTTCATCATCGTTTGGCTATATCTGGTCAAACTCTTTTCATCATCGTTTGCC
* * * *
859499 TACATTTGGTCAAACTC-TTTTCATTATTATTTAGCTGTAT
66 TACATCTGGTCAAACTCTTTTTCATCATCATTTAGCTGCAT
* *
859539 CTGGTCGAACACTTTCCATCATCGTTTGGCTATATCTGGTCAAACTCTTTTCATCATCGTTTG
1 CTAGTCGAACACTTTTCATCATCGTTTGGCTATATCTGGTCAAACTCTTTTCATCATCGTTTG
859602 ATTGTATCGG
Statistics
Matches: 143, Mismatches: 25, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
105 76 0.53
106 67 0.47
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (106 bp):
CTAGTCGAACACTTTTCATCATCGTTTGGCTATATCTGGTCAAACTCTTTTCATCATCGTTTGCC
TACATCTGGTCAAACTCTTTTTCATCATCATTTAGCTGCAT
Found at i:859875 original size:43 final size:43
Alignment explanation
Indices: 859751--859878 Score: 127
Period size: 43 Copynumber: 3.0 Consensus size: 43
859741 TTAGTCTTTG
* * *
859751 GTAAATCCATTTATCCTTTGTTGACTTGTCGATTCTATCCC-T
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCGATTCAATCCCAA
* * ** *
859793 GTCAA-CCTTTTTATCCTTTGTTTACCAGTCGCCTT-AATCCCAA
1 GTAAATCC-TTTTATCCTTTGTTGACTTGTCG-ATTCAATCCCAA
* *
859836 GTAAATCCTTTTATCCTTTGTTGACTTGTTGGTTCAATCCCAA
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCGATTCAATCCCAA
859879 TCAACTCTTT
Statistics
Matches: 67, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
41 2 0.03
42 30 0.45
43 33 0.49
44 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (43 bp):
GTAAATCCTTTTATCCTTTGTTGACTTGTCGATTCAATCCCAA
Found at i:859883 original size:85 final size:84
Alignment explanation
Indices: 859672--859957 Score: 274
Period size: 85 Copynumber: 3.4 Consensus size: 84
859662 CCCTGGCCAA
** * *
859672 CCTTTTATCCTTTGTTGACTTAACAGTTCAATCCCTGTCAACC-TTCTATTCCTTTGTTTACCTG
1 CCTTTTATCCTTTGTTGACTTGTCGGTTCAATCCCTGTCAACCTTTTTA-TCCTTTGTTTACCTG
****
859736 TCGGCTTAGTCTTTGGTAAAT
65 TC-GCTTAGTCACAAGTAAAT
* * * *
859757 CCATTTATCCTTTGTTGACTTGTCGATTCTATCCCTGTCAACCTTTTTATCCTTTGTTTACCAGT
1 CCTTTTATCCTTTGTTGACTTGTCGGTTCAATCCCTGTCAACCTTTTTATCCTTTGTTTACCTGT
* *
859822 CGCCTTAATCCCAAGTAAAT
66 CG-CTTAGTCACAAGTAAAT
* ** ** * * *
859842 CCTTTTATCCTTTGTTGACTTGTTGGTTCAATCCCAATCAA-CTCTTTCGTCCCTTATTTACGTG
1 CCTTTTATCCTTTGTTGACTTGTCGGTTCAATCCCTGTCAACCT-TTTTATCCTTTGTTTACCTG
*
859906 ACAGCTTAGTCACAAGTAAAT
65 TC-GCTTAGTCACAAGTAAAT
* *
859927 -TTTTTATCCTTT-TTGACTTGTTGGTTCAATC
1 CCTTTTATCCTTTGTTGACTTGTCGGTTCAATC
859958 TTGGTCAACT
Statistics
Matches: 168, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
83 19 0.11
84 14 0.08
85 130 0.77
86 5 0.03
ACGTcount: A:0.19, C:0.24, G:0.12, T:0.44
Consensus pattern (84 bp):
CCTTTTATCCTTTGTTGACTTGTCGGTTCAATCCCTGTCAACCTTTTTATCCTTTGTTTACCTGT
CGCTTAGTCACAAGTAAAT
Found at i:866072 original size:21 final size:22
Alignment explanation
Indices: 866026--866070 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
866016 TTGCAAGATG
866026 AAATAAAGAAGTTAGCTAATGA
1 AAATAAAGAAGTTAGCTAATGA
*
866048 AAATAATG-AGTTAGCTAA-GA
1 AAATAAAGAAGTTAGCTAATGA
866068 AAA
1 AAA
866071 ATGAAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 10 0.45
22 7 0.32
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (22 bp):
AAATAAAGAAGTTAGCTAATGA
Found at i:867894 original size:15 final size:15
Alignment explanation
Indices: 867874--867904 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
867864 TAAAAATGTC
*
867874 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
867889 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
867904 C
1 C
867905 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:870002 original size:13 final size:13
Alignment explanation
Indices: 869984--870008 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
869974 CATTTTTCTT
869984 TGTATCGATACAA
1 TGTATCGATACAA
869997 TGTATCGATACA
1 TGTATCGATACA
870009 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:870172 original size:20 final size:20
Alignment explanation
Indices: 870129--870174 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
870119 AAATCTTTTA
870129 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
870150 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
870170 CAAAA
1 CAAAA
870175 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:871838 original size:21 final size:21
Alignment explanation
Indices: 871812--871855 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
871802 GTTTTGATAT
*
871812 GAATTACTTAATTAA-GGGGGA
1 GAATTA-TTAATAAACGGGGGA
871833 GAATTATTAATAAACGGGGGA
1 GAATTATTAATAAACGGGGGA
871854 GA
1 GA
871856 TAAAGGGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.30, T:0.25
Consensus pattern (21 bp):
GAATTATTAATAAACGGGGGA
Found at i:871851 original size:20 final size:21
Alignment explanation
Indices: 871812--871851 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
871802 GTTTTGATAT
* *
871812 GAATTACTTAATTAAGGGGGA
1 GAATTACTTAATAAACGGGGA
871833 GAATTA-TTAATAAACGGGG
1 GAATTACTTAATAAACGGGG
871852 GAGATAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.40, C:0.05, G:0.28, T:0.28
Consensus pattern (21 bp):
GAATTACTTAATAAACGGGGA
Found at i:872571 original size:13 final size:13
Alignment explanation
Indices: 872553--872578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
872543 TACAGCAAGT
872553 ATGTATCGATACA
1 ATGTATCGATACA
872566 ATGTATCGATACA
1 ATGTATCGATACA
872579 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:873626 original size:156 final size:156
Alignment explanation
Indices: 873342--873705 Score: 419
Period size: 156 Copynumber: 2.3 Consensus size: 156
873332 AACTTCCATG
* * * * * * * * *
873342 TCGAAGGTACCCCCTATGAGCATTTTCGTAATTTTTTAGAATCGAGTCCTAAGTTGTCATCGGGT
1 TCGAAGGTATCCCCTAAGGGCATTTTCATAA-TTTTCAAAATCGAGTCCTAAGTTATCACCAGGT
** * * *
873407 CCATTTTTATGTCATGGGTAGGTTATTTAGGATAGGTTCATTCCATCTACAACCTTTTCAAAGTC
65 CCATTTTTATGTCAAAGGTAGGGTATTTAAGATAGGTTAATTCCATCTACAACCTTTTCAAAGTC
*
873472 TTTTA-GGCGTATCAAGCACTTC-AAA
130 CTTTAGGGCGTATCAAGCACTTCTAAA
* * *
873497 GTTGAAGGTATCCCCTAGGGGTATTTTCATAATTTTCCAAAATCGAGTCCTAAGTTATCACCAGG
1 -TCGAAGGTATCCCCTAAGGGCATTTTCATAATTTT-CAAAATCGAGTCCTAAGTTATCACCAGG
* *** *
873562 TCCTCTTTTTATGTCAAAGGT-GGGTATTTAAGATAGGTTAATTCCATCTACATTGTTTTTAAAG
64 TCC-ATTTTTATGTCAAAGGTAGGGTATTTAAGATAGGTTAATTCCATCTACAACCTTTTCAAAG
* *
873626 TCCTTTAGGGGGTATCGAGCACTTCTAAA
128 TCCTTTAGGGCGTATCAAGCACTTCTAAA
* *
873655 TCGAAGGTATCCCCTAAGGGCATTTTTGAAAATTTTCAAAATCGAGTCCTA
1 TCGAAGGTATCCCCTAAGGGCA-TTTTCATAATTTTCAAAATCGAGTCCTA
873706 GGTTGTCATC
Statistics
Matches: 174, Mismatches: 29, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
155 4 0.02
156 93 0.53
157 63 0.36
158 14 0.08
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (156 bp):
TCGAAGGTATCCCCTAAGGGCATTTTCATAATTTTCAAAATCGAGTCCTAAGTTATCACCAGGTC
CATTTTTATGTCAAAGGTAGGGTATTTAAGATAGGTTAATTCCATCTACAACCTTTTCAAAGTCC
TTTAGGGCGTATCAAGCACTTCTAAA
Found at i:873788 original size:26 final size:26
Alignment explanation
Indices: 873759--873838 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
873749 TGAAATTTCT
873759 CAGAATAAAATTTGAATATTTTGTAA
1 CAGAATAAAATTTGAATATTTTGTAA
* * * ***
873785 CAGAATAAAATTTTATTCTGTAAAATAA
1 CAGAATAAAATTTGAATAT-T-TTGTAA
*
873813 AAGAATAAAATTTGAATATTTTGTAA
1 CAGAATAAAATTTGAATATTTTGTAA
873839 AATAAAAGGA
Statistics
Matches: 39, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
26 19 0.49
27 2 0.05
28 18 0.46
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.38
Consensus pattern (26 bp):
CAGAATAAAATTTGAATATTTTGTAA
Found at i:874478 original size:20 final size:20
Alignment explanation
Indices: 874455--874506 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
874445 CACATCCAGA
874455 TGTATTGATACATTA-TGC-AT
1 TGTATTGATACA-TACT-CAAT
*
874475 TGTATCGATACATACTCAAT
1 TGTATTGATACATACTCAAT
874495 TGTATTGATACA
1 TGTATTGATACA
874507 AGAAACTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (20 bp):
TGTATTGATACATACTCAAT
Found at i:874605 original size:33 final size:33
Alignment explanation
Indices: 874537--874606 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
874527 CTACCACTAT
* * *
874537 TTGTATCGATACATGGTACATTATATTGATACA
1 TTGTATCGATACATAGTACATAATATCGATACA
* *
874570 TTGTATCGATACATAGT-GATAAGTATCGATGCA
1 TTGTATCGATACATAGTACATAA-TATCGATACA
874603 TTGT
1 TTGT
874607 CATAACGGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATAGTACATAATATCGATACA
Found at i:874611 original size:20 final size:20
Alignment explanation
Indices: 874572--874611 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
874562 TTGATACATT
*
874572 GTATCGATACATAGTGATAA
1 GTATCGATACATAGTCATAA
* *
874592 GTATCGATGCATTGTCATAA
1 GTATCGATACATAGTCATAA
874612 CGGCTATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATCGATACATAGTCATAA
Found at i:878371 original size:17 final size:18
Alignment explanation
Indices: 878349--878384 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
878339 AATCCTACTA
878349 TTTTTCCATT-TTTTCTT
1 TTTTTCCATTCTTTTCTT
*
878366 TTTTTCCTTTCTTTTCTT
1 TTTTTCCATTCTTTTCTT
878384 T
1 T
878385 CTCTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTCCATTCTTTTCTT
Found at i:878385 original size:14 final size:15
Alignment explanation
Indices: 878360--878396 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
878350 TTTTCCATTT
878360 TTTCTTTT-TTTC-C
1 TTTCTTTTCTTTCTC
878373 TTTCTTTTCTTTCTC
1 TTTCTTTTCTTTCTC
878388 TTT-TTTTCT
1 TTTCTTTTCT
878397 CCAAGTTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 10 0.45
15 4 0.18
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTTTCTTTCTC
Found at i:881945 original size:20 final size:20
Alignment explanation
Indices: 881920--881972 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
881910 CATTTCAAAC
*
881920 ATGTATCGATATATAT-ACTT
1 ATGTATCGATACAT-TCACTT
881940 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
881960 ATTGTATCGATAC
1 A-TGTATCGATAC
881973 TGTCGCAACG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 1 0.03
20 18 0.60
21 11 0.37
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:885057 original size:13 final size:13
Alignment explanation
Indices: 885039--885066 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
885029 ATACAAAGAT
885039 CAATGTATCGATA
1 CAATGTATCGATA
885052 CAATGTATCGATA
1 CAATGTATCGATA
885065 CA
1 CA
885067 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:885063 original size:33 final size:33
Alignment explanation
Indices: 885021--885086 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
885011 AAATTCCCAG
885021 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
**
885054 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
885087 TTGAATAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:885078 original size:20 final size:20
Alignment explanation
Indices: 885053--885108 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
885043 GTATCGATAC
885053 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
885073 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
885093 AATGTATCGATACATT
1 AATGTATCGATACATT
885109 TCCTTAGTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:886094 original size:49 final size:49
Alignment explanation
Indices: 885929--886898 Score: 640
Period size: 49 Copynumber: 20.8 Consensus size: 49
885919 TGAAGAACGA
* * * * * *
885929 CAATGTGCTGATCCATGGCCAGCGACATTAGATTTAAAGAAGAA--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* ** ** * * *
885976 CAATGTGCTGAGACAAGGCCAGCGACATTGGGGTTAGGAATGTTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-GATGAAGGTGC
* * * * * *
886028 CAATATGCTGATTCAAGGCCAACTATATCGGACTTAAAGATGAAGATAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
** * * * *
886077 CAACGTGCTGATCCAAGGCCAGCGACATTGGTCTTAGAGATGAAGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTA-A-A-GATGAAGGTGC
*
886129 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
886178 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGC
* * *
886230 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* ** *
886279 CAATGTGCTGATTCAAGGCCAATGACATTGGTCTTAAAGAT-AATGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAA-GGTGC
* * * *
886328 CAATATACTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
886377 TAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
886424 CAACATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
886463 CAATGTGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * ** *
886502 TAATGTGCTGATTCAAGGCCAACGACATTGGTCTTGGAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
886550 CAATATGCTGATTCAAGGCCAGCGATATTAGG-C-T-----T----GCGC
1 CAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGAAGGTGC
* * *
886589 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
886637 CAATATGTTGATTCAAGGCCAACGATATTGGGCTT----AT-----T-C
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
886676 CAATGTGCTGATTCATGGCTAGCGACATCGGTCTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * ** *
886725 CAATATGCTGATTCAAAGCCAGTGACATTGTTCTT--AGAGGCAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-AAGGTGC
* *
886773 CAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * * *
886812 CAATGTGCTGATTCAAGGCTAGCAATATTGGTCTTAAAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
886860 CAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAG
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
886899 GTGCCACGGA
Statistics
Matches: 739, Mismatches: 124, Indels: 119
0.75 0.13 0.12
Matches are distributed among these distances:
38 2 0.00
39 161 0.22
40 4 0.01
43 2 0.00
44 1 0.00
46 2 0.00
47 70 0.09
48 138 0.19
49 235 0.32
50 9 0.01
51 2 0.00
52 113 0.15
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
Found at i:886107 original size:101 final size:98
Alignment explanation
Indices: 885975--886898 Score: 591
Period size: 87 Copynumber: 9.9 Consensus size: 98
885965 AAGAAGAATG
** ** *
885975 CCAATGTGCTGAGACAAGGCCAGCGACATTGGGGTTAGGAATGTTAAAGATGCCAATATGCTGAT
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA--AATG-TAAAGGTGCCAATATGCTGAT
* *
886040 TCAAGGCCAACTATATCGGACTTAAAGATGAAGATA
63 TCAAGGCCAGCGATATCGGACTTAAAGATGAAGATA
* * * * *
886076 CCAACGTGCTGATCCAAGGCCAGCGACATTGGTCTTAGAGATGAAGAAGGCGCCAATATGCTGAT
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-A-ATGTA-AAGGTGCCAATATGCTGAT
* * *
886141 TCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
63 TCAAGGCCAGCGATATCGGACTTAAAGATGAAGATA
* *
886177 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGAT
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-ATG-TAAAGGTGCCAATATGCTGAT
** *
886242 TCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTA
63 TCAAGGCCAGCGATATCGGACTTAAAGATGAAGATA
** * * *
886278 CCAATGTGCTGATTCAAGGCCAATGACATTGGTCTTAAA-GATAATGGTGCCAATATACTGATTC
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATG-TAAAGGTGCCAATATGCTGATTC
*
886342 AAGGCCAGCGATATCGGACTTAAAGATGAAGATG
65 AAGGCCAGCGATATCGGACTTAAAGATGAAGATA
* *
886376 CTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA-G-AAAGGTGCCAACATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGTAAAGGTGCCAATATGCTGATTCA
* *
886439 AGGCCAGCGATATTGGGCTT---G-T---G---
66 AGGCCAGCGATATCGGACTTAAAGATGAAGATA
* *
886462 CCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTT--ATGCT-AA--TG------TGCTGATTC
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATG-TAAAGGTGCCAATATGCTGATTC
* * * * ** * * *
886516 AAGGCCAACGACATTGGTCTTGGAGA-CAAGGTG
65 AAGGCCAGCGATATCGGACTTAAAGATGAAGATA
* * * *
886549 CCAATATGCTGATTCAAGGCCAGCGATATTAGG-C-----T-T----GCGCCAATGTGCTGATTC
1 CCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAATGTAAAGGTGCCAATATGCTGATTC
* * * * * *
886603 AAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTG
65 AAGGCCAGCGATATCGGACTTAAAGATGAAGATA
* * * * * *
886636 CCAATATGTTGATTCAAGGCCAACGATATTGGGCTT--A--T-----T-CCAATGTGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGTAAAGGTGCCAATATGCTGATTCA
* * * * * *
886691 TGGCTAGCGACATCGGTCTTAAAGATGAAGGTG
66 AGGCCAGCGATATCGGACTTAAAGATGAAGATA
* * * ** * **
886724 CCAATATGCTGATTCAAAGCCAGTGACATTGTTCTTAGA-GGCAAGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGTAAAGGTGCCAATATGCTGATTCA
* *
886788 AGGCCAGCGATATTGGGCTT---G-T---G---
66 AGGCCAGCGATATCGGACTTAAAGATGAAGATA
* * * *
886811 CCAATGTGCTGATTCAAGGCTAGCAATATTGGTCTTAAA-G-ACAAGGTGCCAATATGCTGATTC
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGTA-AAGGTGCCAATATGCTGATTC
* * *
886874 AAGGCCAGTGATATTGGGCTTAAAG
65 AAGGCCAGCGATATCGGACTTAAAG
886899 GTGCCACGGA
Statistics
Matches: 699, Mismatches: 81, Indels: 97
0.80 0.09 0.11
Matches are distributed among these distances:
78 27 0.04
81 2 0.00
82 1 0.00
84 5 0.01
85 1 0.00
86 37 0.05
87 209 0.30
88 37 0.05
89 2 0.00
90 3 0.00
92 1 0.00
93 2 0.00
94 1 0.00
96 39 0.06
97 30 0.04
98 87 0.12
99 1 0.00
100 5 0.01
101 207 0.30
102 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (98 bp):
CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATGTAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATCGGACTTAAAGATGAAGATA
Found at i:886199 original size:202 final size:194
Alignment explanation
Indices: 885929--886451 Score: 645
Period size: 202 Copynumber: 2.6 Consensus size: 194
885919 TGAAGAACGA
* * * * * * * **
885929 CAATGTGCTGATCCATGGCCAGCGACATTAGATTTAAAGAAGAA-TGCCAATGTGCTGAGACAAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATGTGCTGATTCAAG
** * * *
885993 GCCAGCGACATTGGGGTTAGGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAACTATATCG
66 GCCAGCGACATTGGACTTA--AATG--AAAGGTGCCAATATGCTGATTCAAGGCCAACGATATCA
* *
886058 GACTTAAAGATGAAGATACCAACGTGCTGATCCAAGGCCAGCGACATTGGTCTTAGAGATGAAGA
127 GACTTAAAGATGAAGATACCAACGTGCTGATCCAAGGCCAACGACATTGGTCTTAAAGAT--A-A
886123 AGGCGC
189 AGGCGC
886129 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATGTGCTGATTCAA
* * *
886194 GGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATT
65 GGCCAGCGACATTGGACTT-AA-ATG--AAAGGTGCCAATATGCTGATTCAAGGCCAACGATATC
* * * * *
886259 AGACTTAAAGATGAAGGTACCAATGTGCTGATTCAAGGCCAATGACATTGGTCTTAAAGATAATG
126 AGACTTAAAGATGAAGATACCAACGTGCTGATCCAAGGCCAACGACATTGGTCTTAAAGATAAAG
*
886324 GTGC
191 GCGC
* * *
886328 CAATATACTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCTAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG-TGCCAATGTGCTGATTCAA
* *
886393 GGCCAGCGACATTGGACTTAAA-GAAAGGTGCCAACATGCTGATTCAAGGCCAGCGATAT
65 GGCCAGCGACATTGGACTTAAATGAAAGGTGCCAATATGCTGATTCAAGGCCAACGATAT
886452 TGGGCTTGTG
Statistics
Matches: 286, Mismatches: 32, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
194 34 0.12
196 1 0.00
197 1 0.00
198 3 0.01
199 84 0.29
200 38 0.13
201 1 0.00
202 123 0.43
203 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (194 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATGTGCTGATTCAAG
GCCAGCGACATTGGACTTAAATGAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATCAGACT
TAAAGATGAAGATACCAACGTGCTGATCCAAGGCCAACGACATTGGTCTTAAAGATAAAGGCGC
Found at i:886212 original size:150 final size:147
Alignment explanation
Indices: 885929--886898 Score: 615
Period size: 150 Copynumber: 6.9 Consensus size: 147
885919 TGAAGAACGA
* * * * * **
885929 CAATGTGCTGATCCATGGCCAGCGACATTAGATTTAAAGAAGAA--TGCCAATGTGCTGAGACAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* ** * * * * *
885992 GGCCAGCGACATTGGGGTTAGGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAACTATATC
66 GGCCAGCGATATTGGACTTA--AA-GATAATGGTGCCAATATGCTGATTCAAGGCCAGCGATATC
*
886057 GGACTTAAAGATGAAGATAC
128 GGACTTAAAGATGAAGATGC
* * * *
886077 CAACGTGCTGATCCAAGGCCAGCGACATTGGTCTTAGAGATGAAGAAGGCGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-A-A-GAAGAAGGTGCCAATATGCTGATT
* *
886142 CAAGGCCAGCGATATTGGACTTAAAGATGAA-GGTGCCAATGTGCTGATTCAAGGCCAGCGACAT
63 CAAGGCCAGCGATATTGGACTTAAAGAT-AATGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
* **
886206 TGGACTTAAAGATGACAAAGGCGC
127 CGGACTTAAAGATG---AAGATGC
* * * * * *
886230 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTACCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
** * * *
886295 GGCCAATGACATTGGTCTTAAAGATAATGGTGCCAATATACTGATTCAAGGCCAGCGATATCGGA
66 GGCCAGCGATATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGA
886360 CTTAAAGATGAAGATGC
131 CTTAAAGATGAAGATGC
* *
886377 TAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG-A-AAGGTGCCAACATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* * * *
886440 GGCCAGCGATATTGG-------GCT--T-GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGG
66 GGCCAGCGATATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGA
886495 C-T-----T----ATGC
131 CTTAAAGATGAAGATGC
* * * ** *
886502 TAATGTGCTGATTCAAGGCCAACGACATTGGTCTTGGAG-ACAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* * * *
886566 GGCCAGCGATATTAGG-C-------T--T-GCGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
66 GGCCAGCGATATT-GGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGG
* * *
886620 TCTTAAAGA-CAAGGTGC
130 ACTTAAAGATGAAGATGC
* * * * * * * *
886637 CAATATGTTGATTCAAGGCCAACGATATTGGGCTT--------A--TTCCAATGTGCTGATTCAT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* * * * * * * * *
886692 GGCTAGCGACATCGGTCTTAAAGATGAA-GGTGCCAATATGCTGATTCAAAGCCAGTGACATTGT
66 GGCCAGCGATATTGGACTTAAAGAT-AATGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGG
* * *
886756 TCTT--AGAGGCAAGGTGC
130 ACTTAAAGATG-AAGATGC
* * * *
886773 CAATATGCTGATTCAAGGCCAGCGATATTGGGCTT----------GTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* * * * * * *
886828 GGCTAGCAATATTGGTCTTAAAGACAA-GGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGG
66 GGCCAGCGATATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGA
886892 CTTAAAG
131 CTTAAAG
886899 GTGCCACGGA
Statistics
Matches: 686, Mismatches: 96, Indels: 91
0.79 0.11 0.10
Matches are distributed among these distances:
125 42 0.06
126 98 0.14
127 3 0.00
128 1 0.00
129 1 0.00
133 1 0.00
134 4 0.01
135 104 0.15
136 113 0.16
137 2 0.00
138 2 0.00
145 32 0.05
147 40 0.06
148 31 0.05
149 3 0.00
150 131 0.19
151 11 0.02
152 1 0.00
153 66 0.10
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (147 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGA
CTTAAAGATGAAGATGC
Found at i:886474 original size:39 final size:39
Alignment explanation
Indices: 886420--886894 Score: 239
Period size: 39 Copynumber: 11.0 Consensus size: 39
886410 TTAAAGAAAG
*
886420 GTGCCAACATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
886459 GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * * *
886498 ATGCTAATGTGCTGATTCAAGGCCAACGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
886537 GGAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
886585 GCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* *
886624 AAAGACAAGGTGCCAATATGTTGATTCAAGGCCAACGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * * * * *
886672 ATTCCAATGTGCTGATTCATGGCTAGCGACATCGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T
* * * **
886717 GAAGGTGCCAATATGCTGATTCAAAGCCAGTGACATTGTTCTTAGAGGCAAG
1 ----GTGCCAATATGCTGATTCAAGGCCA--G-C---GATATT-G-GGC-TT
886769 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
886808 GTGCCAATGTGCTGATTCAAGGCTAGCAATATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
886847 AAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
886895 AAAGGTGCCA
Statistics
Matches: 328, Mismatches: 63, Indels: 81
0.69 0.13 0.17
Matches are distributed among these distances:
39 167 0.51
40 4 0.01
41 1 0.00
42 4 0.01
45 2 0.01
46 1 0.00
48 123 0.38
49 19 0.06
51 1 0.00
52 1 0.00
55 2 0.01
56 1 0.00
57 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:886597 original size:126 final size:125
Alignment explanation
Indices: 886373--886624 Score: 414
Period size: 126 Copynumber: 2.0 Consensus size: 125
886363 AAAGATGAAG
*
886373 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGGTGCCAACATGCTGATTC
1 ATGCTAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAAAGGTGCCAACATGCTGATTC
* * *
886438 AAGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTT
66 AAGGCCAGCGATATTAGGCTTGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
* ** *
886498 ATGCTAATGTGCTGATTCAAGGCCAACGACATTGGTCTTGGAGACAAGGTGCCAATATGCTGATT
1 ATGCTAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGA-AAGGTGCCAACATGCTGATT
*
886563 CAAGGCCAGCGATATTAGGCTTGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
65 CAAGGCCAGCGATATTAGGCTTGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
886624 A
1 A
886625 AAGACAAGGT
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
125 40 0.34
126 77 0.66
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (125 bp):
ATGCTAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAAAGGTGCCAACATGCTGATTC
AAGGCCAGCGATATTAGGCTTGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
Found at i:886667 original size:48 final size:48
Alignment explanation
Indices: 886587--886898 Score: 273
Period size: 48 Copynumber: 6.9 Consensus size: 48
886577 TTAGGCTTGC
* *
886587 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGGT
* * *
886635 GCCAATATGTTGATTCAAGGCCAACGATATTGGGCTT-------A--T
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGGT
* * * * * * *
886674 TCCAATGTGCTGATTCATGGCTAGCGACATCGGTCTTAAAGATGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-CAAGGT
* * * * * *
886723 GCCAATATGCTGATTCAAAGCCAGTGACATTGTTCTTAGAGGCAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGGT
*
886771 GCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT---------GT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGGT
* * *
886810 GCCAATGTGCTGATTCAAGGCTAGCAATATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGGT
* *
886858 GCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAG
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAG
886899 GTGCCACGGA
Statistics
Matches: 206, Mismatches: 39, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
39 64 0.31
41 1 0.00
47 1 0.00
48 107 0.52
49 33 0.16
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGGT
Found at i:886769 original size:136 final size:135
Alignment explanation
Indices: 886587--886898 Score: 462
Period size: 136 Copynumber: 2.3 Consensus size: 135
886577 TTAGGCTTGC
* * *
886587 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
* * *
886652 AGGCCAACGATATTGGGCTTATTCCAATGTGCTGATTCATGGCTAGCGACATCGGTCTTAAAGAT
66 AGGCCAACGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCTAGCAACATCGGTCTTAAAGA-
*
886717 GAAGGT
130 CAAGGT
* * * *
886723 GCCAATATGCTGATTCAAAGCCAGTGACATTGTTCTTAGAGGCAAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
* * * *
886788 AGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCTAGCAATATTGGTCTTAAAGAC
66 AGGCCAACGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCTAGCAACATCGGTCTTAAAGAC
886853 AAGGT
131 AAGGT
* *
886858 GCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAG
1 GCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAG
886899 GTGCCACGGA
Statistics
Matches: 156, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
135 41 0.26
136 115 0.74
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (135 bp):
GCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
AGGCCAACGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCTAGCAACATCGGTCTTAAAGAC
AAGGT
Found at i:886798 original size:223 final size:223
Alignment explanation
Indices: 886228--886895 Score: 838
Period size: 223 Copynumber: 3.0 Consensus size: 223
886218 TGACAAAGGC
* * *
886228 GCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTACCAATGTGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTC
* * * *
886293 AAGGCCAATGACATTGGTCTTAAAGATAATGGTGCCAATATACTGATTCAAGGCCAGCGATA-TC
66 AAGGCCAATGACATTGGTCTTAGAGACAA-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTA
* *
886357 GGACTTAAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGG
130 GG-C-T-----T---G-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGG
* *
886421 TGCCAACATGCTGATTCAAGGCCAGCGATATTGGGCTTGT
184 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAT
* *
886461 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A--TGCTAATGTGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTC
* *
886516 AAGGCCAACGACATTGGTCTTGGAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAG
66 AAGGCCAATGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAG
* *
886581 GCTTGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGTT
131 GCTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
*
886646 GATTCAAGGCCAACGATATTGGGCTTAT
196 GATTCAAGGCCAGCGATATTGGGCTTAT
* * * * * * *
886674 TCCAATGTGCTGATTCATGGCTAGCGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTC
* * * * *
886739 AAAGCCAGTGACATTGTTCTTAGAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
66 AAGGCCAATGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAG
* * *
886804 GCTTGTGCCAATGTGCTGATTCAAGGCTAGCAATATTGGTCTTAAAGACAAGGTGCCAATATGCT
131 GCTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
*
886869 GATTCAAGGCCAGTGATATTGGGCTTA
196 GATTCAAGGCCAGCGATATTGGGCTTA
886896 AAGGTGCCAC
Statistics
Matches: 383, Mismatches: 40, Indels: 34
0.84 0.09 0.07
Matches are distributed among these distances:
212 40 0.10
213 70 0.18
214 1 0.00
216 1 0.00
219 1 0.00
221 2 0.01
222 32 0.08
223 201 0.52
225 1 0.00
227 1 0.00
232 1 0.00
233 32 0.08
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (223 bp):
GCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTC
AAGGCCAATGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAG
GCTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGGCTTAT
Found at i:887023 original size:33 final size:33
Alignment explanation
Indices: 886895--887833 Score: 713
Period size: 33 Copynumber: 29.8 Consensus size: 33
886885 TATTGGGCTT
* *
886895 AAAGGTGCCACGGAGTTGTGGCCTT-ACAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
886927 AAAGGGATGCCATGGAGGTGTGGGCTTAAAAGGGAG
1 AAA-GG-TGCCACGGAGTTGTGGACTTAAAA-GGAA
* * * *
886963 AAGGGTGCCACGGTGTTATGGATTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
** *
886996 AAAAATGCCATGGAGTTGTGGACTTAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
887026 ---GGTGCCATGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
887056 AAAGAATGCCACGGAGTTATGGGCTTTAAAA-G--
1 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* *
887088 ---GGTGCCATGGAATTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887118 AAAGAGTGCCACGAAGTTGTGGGCTTTCAAAAGGAA
1 AAAG-GTGCCACGGAGTTGTGGAC-TT-AAAAGGAA
* *
887154 CAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* **
887187 AAAGATGCCATAGAGTTGTGGACTTAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887217 ---GGTGCTACGGAGTTGTAGACTTAAAAGGAAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGG-AA
* * *
887248 AAAAGTACCACGGAGTTGTGGGCTTTAAAA--AA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* * *
887280 AAAGGTGTCACGAAGCTGTGGACTTAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887310 -AA--TGCCACAGAGCTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
887340 CAAGGTGCAACGGAGTTATGGATTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
** *
887373 AAATATGCCACGGAGTTGTGGACATAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887403 ---GGTGCCACGCA-ATGATGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTG-TGGACTTAAAAGGAA
*
887433 AAAGAGTGCCATGGAGTTGTGGACTTAAAAGGAA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887467 AAAGATGCCACGGAGTTGTGGACTTCAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
887497 ---GGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887527 CAAGGTGCCACGGAGTTGTGGACTTCAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
887560 AAAGATGCCACGGAGTTGTGGACTTAAAAGG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
887591 --A--TGCCACGGAGTTGTGGACTTAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
887617 ---GGTGCCACGGAGTTATGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887647 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG-A
1 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
*
887681 AAAGGTGCCACGGAGCTGTGGACTTAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
887711 ---GGTGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
887741 AAAGGGTACTACGGAGTTGTGGGCTTTCATAA-GAA
1 AAA-GGTGCCACGGAGTTGTGGAC-TT-AAAAGGAA
* *
887776 AAAGGGTGCCACGGAGTCGTGGACTTAAAA-AAA
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
887809 AAAGGTGCCACAGAGTCGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
887834 TGGGAAGAGA
Statistics
Matches: 727, Mismatches: 110, Indels: 140
0.74 0.11 0.14
Matches are distributed among these distances:
26 3 0.00
27 185 0.25
28 22 0.03
29 4 0.01
31 9 0.01
32 53 0.07
33 214 0.29
34 150 0.21
35 68 0.09
36 19 0.03
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:887032 original size:27 final size:27
Alignment explanation
Indices: 887001--887738 Score: 299
Period size: 27 Copynumber: 24.0 Consensus size: 27
886991 AGGAAAAAAA
*
887001 TGCCATGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
887028 TGCCATGGAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
* *
887060 AATGCCACGGAGTTATGGGCTTTAAAAGGG
1 --TGCCACGGAGTTGTGGAC-TTAAAAGGG
* *
887090 TGCCATGGAATTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----G-G
* *
887124 TGCCACGAAGTTGTGGGCTTTCAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGAC-TT-AAAA-G-----GG
*
887159 TGCCATGGAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
**
887191 ATGCCATAGAGTTGTGGACTTAAAAGGG
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
* *
887219 TGCTACGGAGTTGTAGACTTAAAAGGAAAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-------G
* * *
887253 TACCACGGAGTTGTGGGCTTTAAAAAAAAAGG
1 TGCCACGGAGTTGTGGAC-TT----AAAAGGG
* * * **
887285 TGTCACGAAGCTGTGGACTTAAAAGAA
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
887312 TGCCACAGAGCTGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
* * * *
887345 TGCAACGGAGTTATGGATTTAAAAGGAAAAATA
1 TGCCACGGAGTTGTGGACTTAAAAGG------G
*
887378 TGCCACGGAGTTGTGGACATAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
887405 TGCCACGCA-ATGATGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTG-TGGACTTAAAA-G-----G-G
*
887439 TGCCATGGAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
*
887471 ATGCCACGGAGTTGTGGACTTCAAAGGG
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
887499 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
*
887532 TGCCACGGAGTTGTGGACTTCAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
*
887564 ATGCCACGGAGTTGTGGACTTAAAAGGA
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
887592 TGCCACGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
887619 TGCCACGGAGTTATGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----G-G
*
887653 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAGG
1 TGCCACGGAGTTGTGGAC-TT-AAAAG----GG
*
887686 TGCCACGGAGCTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
887713 TGCCACGAAGTTGTGGACTTAAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGG
887739 AAAAAGGGTA
Statistics
Matches: 560, Mismatches: 69, Indels: 164
0.71 0.09 0.21
Matches are distributed among these distances:
26 2 0.00
27 198 0.35
28 22 0.04
30 1 0.00
31 7 0.01
32 24 0.04
33 165 0.29
34 88 0.16
35 33 0.06
36 15 0.03
39 5 0.01
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:887050 original size:60 final size:60
Alignment explanation
Indices: 886963--887743 Score: 585
Period size: 60 Copynumber: 12.6 Consensus size: 60
886953 TAAAAGGGAG
* * * *
886963 AAGGGTGCCACGGTGTTATGGATTTAAAAGGAAAAAAATGCCATGGAGTTGTGGACTTAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTAA
* * *
887023 AAGGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGAATGCCACGGAGTTATGGGCTTTAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AATGCCACGGAGTTGTGGAC-TTAA
* * * * *
887085 AAGGGTGCCATGGAATTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTTCAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AATGCCACGGAGTTGTGGAC-TT-AA
* * **
887148 AAGGAACAAGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGATGCCATAGAGTTGTGGACTTA
1 AA-G-----GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTA
887213 A
60 A
* * * *
887214 AAGGGTGCTACGGAGTTGTAGACTTAAAAGGAAAAAAAGTACCACGGAGTTGTGGGCTTTAAAAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAA-TGCCACGGAGTTGTGGAC-TT----A
887279 A
60 A
* * * * * *
887280 AAAGGTGTCACGAAGCTGTGGACTTAAAA-G-----AATGCCACAGAGCTGTGGACTTAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTAA
* * * * *
887334 AAGGAACAAGGTGCAACGGAGTTATGGATTTAAAAGGAAAAATATGCCACGGAGTTGTGGACATA
1 AA-G-----GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTA
887399 A
60 A
* * * *
887400 AAGGGTGCCACGCA-ATGATGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGACTTAA
1 AAGGGTGCCACGGAGTTG-TGGACTTAAAAGGAAAAA-AATGCCACGGAGTTGTGGACTTAA
* *
887461 AAGGAAAAAGATGCCACGGAGTTGTGGACTTCAAAGG------GTGCCACGGAGTTGTGGACTTA
1 AAGG-----G-TGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTA
887520 A
60 A
* *
887521 AAGGAACAAGGTGCCACGGAGTTGTGGACTTCAAAGGAAAAAGATGCCACGGAGTTGTGGACTTA
1 AA-G-----GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTA
887586 A
60 A
* * *
887587 AAGGATGCCACGGAGTTGTGGACTTAAAAGG------GTGCCACGGAGTTATGGACTTAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTAA
* * ** *
887641 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAGGTGCCACGGAGCTGTGGACT
1 AA-G-----G-GTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAAATGCCACGGAGTTGTGGACT
887705 TAA
58 TAA
*
887708 AAGGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA
887744 GGGTACTACG
Statistics
Matches: 586, Mismatches: 73, Indels: 124
0.75 0.09 0.16
Matches are distributed among these distances:
54 27 0.05
55 1 0.00
58 2 0.00
59 22 0.04
60 209 0.36
61 76 0.13
62 69 0.12
63 4 0.01
64 1 0.00
65 4 0.01
66 78 0.13
67 45 0.08
68 16 0.03
69 32 0.05
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.21
Consensus pattern (60 bp):
AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAATGCCACGGAGTTGTGGACTTAA
Found at i:887300 original size:93 final size:93
Alignment explanation
Indices: 886926--887834 Score: 729
Period size: 94 Copynumber: 9.7 Consensus size: 93
886916 CCTTACAGGA
* * * * ** * *
886926 AAAAGGGATGCCATGGAGGTGTGGGCTTAAAAGGGAGAAGGGTGCCACGGTGTTATGGA-TTTAA
1 AAAAGGG-TGCCACGGAGTTGTGGACTTAAAA-GGAAAAAAGTGCCACGGAGTTGTGGACTTTAA
* *
886990 AAGGAAAAAAATGCCATGGAGTTGTGGACTT
64 AA-GAAAAAGATGCCACGGAGTTGTGGACTT
* * * *
887021 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGAATGCCACGGAGTTATGGGCTTTAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AGTGCCACGGAGTTGTGGACTTTAAA
* * *
887086 AG-----GGTGCCATGGAATTGTGGACTT
65 AGAAAAAGATGCCACGGAGTTGTGGACTT
* * * * *
887110 AAAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTTCAAAAGGAACAAGGTGCCATGGAGTTGTGG
1 AAAA-G-----G-GTGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAAAGTGCCACGGAGTTGTGG
**
887175 AC-TTAAAAGGAAAAAGATGCCATAGAGTTGTGGACTT
57 ACTTTAAAA-GAAAAAGATGCCACGGAGTTGTGGACTT
* * * *
887212 AAAAGGGTGCTACGGAGTTGTAGACTTAAAAGGAAAAAAAGTACCACGGAGTTGTGGGCTTTAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG-AAAAAAGTGCCACGGAGTTGTGGACTTTAAA
* * * *
887277 A-AAAAAGGTGTCACGAAGCTGTGGACTT
65 AGAAAAAGATGCCACGGAGTTGTGGACTT
** * * * * * *
887305 AAAAGAATGCCACAGAGCTGTGGACTTAAAAGGAACAAGGTGCAACGGAGTTATGGA-TTTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTTTAAAA
* *
887369 GGAAAAATATGCCACGGAGTTGTGGACAT
66 -GAAAAAGATGCCACGGAGTTGTGGACTT
* * *
887398 AAAAGGGTGCCACGCA-ATGATGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGAC-TTAA
1 AAAAGGGTGCCACGGAGTTG-TGGACTTAAAAGGAAAAA-AGTGCCACGGAGTTGTGGACTTTAA
887461 AAGGAAAAAGATGCCACGGAGTTGTGGACTT
64 AA-GAAAAAGATGCCACGGAGTTGTGGACTT
* * * * *
887492 CAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTCAAAG
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTTTAAAA
887557 GAAAAAGATGCCACGGAGTTGTGGACTT
66 GAAAAAGATGCCACGGAGTTGTGGACTT
* *
887585 AAAAGGATGCCACGGAGTTGTGGACTTAAAAGG------GTGCCACGGAGTTATGGAC-TTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTTTAAAA
*
887643 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
66 -GAAAAAGA-TGCCACGGAGTTGTGGAC-TT
* *
887674 AAAAAGAAAAGGTGCCACGGAGCTGTGGACTTAAAAGG------GTGCCACGAAGTTGTGGAC-T
1 -AAAAG----GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTT
* * * *
887732 TAAAAGGAAAAAGGGTACTACGGAGTTGTGGGCTTTCAT
61 TAAAA-GAAAAA-GATGCCACGGAGTTGTGGAC--T--T
* * *
887771 AAGAAAAAGGGTGCCACGGAGTCGTGGACTTAAAA--AAAAAAGGTGCCACAGAGTCGTGGACTT
1 ----AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA-GTGCCACGGAGTTGTGGACTT
887834 T
61 T
887835 GGGAAGAGAT
Statistics
Matches: 671, Mismatches: 94, Indels: 91
0.78 0.11 0.11
Matches are distributed among these distances:
86 4 0.01
87 26 0.04
88 17 0.03
89 25 0.04
90 6 0.01
91 7 0.01
92 20 0.03
93 186 0.28
94 215 0.32
95 41 0.06
96 47 0.07
97 19 0.03
98 10 0.01
100 6 0.01
101 17 0.03
102 25 0.04
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.21
Consensus pattern (93 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTTTAAAA
GAAAAAGATGCCACGGAGTTGTGGACTT
Found at i:887725 original size:121 final size:120
Alignment explanation
Indices: 887021--887738 Score: 514
Period size: 121 Copynumber: 5.8 Consensus size: 120
887011 TTGTGGACTT
* * * * * *
887021 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGAATGCCACGGAGTTATGGGCTTTAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAG-ATGCCACGGAGCTGTGGAC-TTAAA
* * * * * *
887086 AGGGTGCCATGGAATTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTTCAAAAG
64 AGGATGCCACGGAGTTGTGGACTTAAAA-G-----G-GTGCCACGGAGTTATGGAC-TT-AAAAG
887151 G
120 G
* * * ** *
887152 AACAAGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAGATGCCATAGAGTTGTGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGATGCCACGGAGCTGTGGACTTAAAAG
* * * * * *
887217 GGTGCTACGGAGTTGTAGACTTAAAAGGAAAAAAAGTACCACGGAGTTGTGGGCTTTAAAA--
66 GATGCCACGGAGTTGTGGACTTAAAAGG-------GTGCCACGGAGTTATGGAC-TTAAAAGG
* * * *
887278 AAAAAGGTGTCACGAAGCTGTGGACTT-AAAAG----A-ATGCCACAGAGCTGTGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGATGCCACGGAGCTGTGGACTTAAAAG
* * * * * *
887337 GAACAAGGTGCAACGGAGTTATGGATTTAAAAGGAAAAATATGCCACGGAGTTGTGGACATAAAA
66 G----A--TGCCACGGAGTTGTGGACTTAAAAGG------GTGCCACGGAGTTATGGACTTAAAA
887402 -G
119 GG
* * * * *
887403 -----GGTGCCACGCA-ATGATGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGACTTAAA
1 AAAAAGGTGCCACGGAGTTG-TGGACTTAAAAAGAAAAAGA-TGCCACGGAGCTGTGGACTTAAA
* *
887462 AGGAAAAAGATGCCACGGAGTTGTGGACTTCAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
64 A-G-----GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAAGG
* * * *
887525 AACAAGGTGCCACGGAGTTGTGGACTTCAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGATGCCACGGAGCTGTGGACTTAAAAG
887590 GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAAGG
66 GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAAGG
* *
887645 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAGGTGCCACGGAGCTGTGGACTTAAA
1 AAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAAAGAAAAAGATGCCACGGAGCTGTGGACTTAAA
* *
887709 AGGGTGCCACGAAGTTGTGGACTTAAAAGG
64 AGGATGCCACGGAGTTGTGGACTTAAAAGG
887739 AAAAAGGGTA
Statistics
Matches: 494, Mismatches: 57, Indels: 82
0.78 0.09 0.13
Matches are distributed among these distances:
119 2 0.00
120 99 0.20
121 101 0.20
122 7 0.01
123 1 0.00
124 5 0.01
125 27 0.05
126 68 0.14
127 72 0.15
128 8 0.02
129 51 0.10
130 15 0.03
131 37 0.07
133 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (120 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGATGCCACGGAGCTGTGGACTTAAAAG
GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAAGG
Found at i:887759 original size:34 final size:33
Alignment explanation
Indices: 886898--887833 Score: 548
Period size: 34 Copynumber: 29.7 Consensus size: 33
886888 TGGGCTTAAA
* * *
886898 GGTGCCACGGAGTTGTGGCCTTACAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
* * * * *
886931 GGATGCCATGGAGGTGTGGGCTTAAAAGGGAGAAG
1 GG-TGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* * *
886966 GGTGCCACGGTGTTATGGATTTAAAAGGAAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
** *
886999 AATGCCATGGAGTTGTGGACTT------AAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
*
887026 GGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
** * * *
887060 AATGCCACGGAGTTATGGGCTT-----TAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
* *
887088 GGTGCCATGGAATTGTGGACTTAAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* * * *
887122 AGTGCCACGAAGTTGTGGGCTTTCAAAAGGAACAA-
1 GGTGCCACGGAGTTGTGGAC-TT-AAAA-GAAAAAG
*
887157 GGTGCCATGGAGTTGTGGACTTAAAAGGAAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* **
887190 GATGCCATAGAGTTGTGGACTT------AAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
* * *
887217 GGTGCTACGGAGTTGTAGACTTAAAAGGAAAAAA
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* * *
887251 AGTACCACGGAGTTGTGGGCTTTAAAA-AAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTAAAAGAAAAAG
* * *
887283 GGTGTCACGAAGCTGTGGACTTAAAAG---AA-
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
* * *
887312 --TGCCACAGAGCTGTGGACTTAAAAGGAACAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* * *
887343 GGTGCAACGGAGTTATGGATTTAAAAGGAAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
** *
887376 TATGCCACGGAGTTGTGGAC-----A-TAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
* *
887403 GGTGCCACGCA-ATGATGGACTTAAAAGGAAAAAG
1 GGTGCCACGGAGTTG-TGGACTTAAAA-GAAAAAG
* *
887437 AGTGCCATGGAGTTGTGGACTTAAAAGGAAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* *
887470 GATGCCACGGAGTTGTGGACTT------CAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
*
887497 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
*
887530 GGTGCCACGGAGTTGTGGACTTCAAAGGAAAAA-
1 GGTGCCACGGAGTTGTGGACTT-AAAAGAAAAAG
*
887563 GATGCCACGGAGTTGTGGACTT------AAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
*
887590 GATGCCACGGAGTTGTGGACTT------AAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
*
887617 GGTGCCACGGAGTTATGGACTTAAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* *
887651 AGTGCCACGGAGTTGTGGGCTTTAAAA-AGAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTAAAAGA-AAAAG
*
887684 GGTGCCACGGAGCTGTGGACTT------AAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
*
887711 GGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAG
* * * *
887745 GGTACTACGGAGTTGTGGGCTTTCATAAGAAAAAG
1 GGTGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAG
* *
887780 GGTGCCACGGAGTCGTGGACTTAAAA-AAAAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
* *
887812 GGTGCCACAGAGTCGTGGACTT
1 GGTGCCACGGAGTTGTGGACTT
887834 TGGGAAGAGA
Statistics
Matches: 708, Mismatches: 122, Indels: 147
0.72 0.12 0.15
Matches are distributed among these distances:
26 25 0.04
27 159 0.22
28 23 0.03
29 2 0.00
31 8 0.01
32 43 0.06
33 181 0.26
34 190 0.27
35 64 0.09
36 13 0.02
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.21
Consensus pattern (33 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAG
Found at i:887882 original size:31 final size:30
Alignment explanation
Indices: 887808--888089 Score: 316
Period size: 31 Copynumber: 9.2 Consensus size: 30
887798 ACTTAAAAAA
* * *
887808 AAAAGGTGCCACAGAGTCGTGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
887838 AAGAGATGCCACTAAGTCGTGGACTTTGAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
887868 AAAAGATTGCCACTAAGTCATGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
* *
887900 AAAAGATGCCACTGAGTCATGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
887930 AAGAGATGCCACTGAGTCGTGGGCTTTGAGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGA-G
* *
887961 AAAAGATGCCATTGAGTCATGGACTTTGAGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGA-G
*
887992 AAAATATGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
* *
888023 AAAATG-TGCCACTGAGTCATGGACTTTGGG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAG
* *
888053 AAGAGATGCCA-TTACGTCGTGGACTTTGAG
1 AAAAGATGCCACTGA-GTCGTGGACTTTGAG
*
888083 AAGAGAT
1 AAAAGAT
888090 TTAAAGAATT
Statistics
Matches: 218, Mismatches: 27, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
29 3 0.01
30 85 0.39
31 121 0.56
32 9 0.04
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:887933 original size:92 final size:91
Alignment explanation
Indices: 887808--888089 Score: 361
Period size: 92 Copynumber: 3.1 Consensus size: 91
887798 ACTTAAAAAA
* * *
887808 AAAAGGTGCCACAGAGTCGTGGACTTTGGGAAGAGATGCCACTAAGTCGTGGACTTTGAGAAAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCGTGGACTTTGAGAAAAG
*
887873 ATTGCCACTAAGTCATGGACTTTGAAG
66 A-TGCCATTAAGTCATGGACTTTGAAG
* *
887900 AAAAGATGCCACTGAGTCATGGACTTTGGGAAGAGATGCCACTGAGTCGTGGGCTTTGAGGAAAA
1 AAAAGATGCCACTGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCGTGGACTTTGA-GAAAA
* *
887965 GATGCCATTGAGTCATGGACTTTGAGG
65 GATGCCATTAAGTCATGGACTTTGAAG
* * * * * *
887992 AAAATATGCCACTGAGTCGTGGACTTTGAAGAAAATG-TGCCACTGAGTCATGGACTTTGGGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-GGAAGA-GATGCCACTGAGTCGTGGACTTTGAGAAA
* *
888056 AGATGCCATTACGTCGTGGACTTTG-AG
64 AGATGCCATTAAGTCATGGACTTTGAAG
*
888083 AAGAGAT
1 AAAAGAT
888090 TTAAAGAATT
Statistics
Matches: 165, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
91 6 0.04
92 127 0.77
93 31 0.19
94 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (91 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCGTGGACTTTGAGAAAAG
ATGCCATTAAGTCATGGACTTTGAAG
Found at i:888002 original size:123 final size:123
Alignment explanation
Indices: 887814--888082 Score: 393
Period size: 123 Copynumber: 2.2 Consensus size: 123
887804 AAAAAAAAGG
* * *
887814 TGCCACAGAGTCGTGGACTTTG-GGAAGAGATGCCACTAAGTCGTGGACTTTGAGAAAAGATTGC
1 TGCCACTGAGTCGTGGACTTTGAGGAAAAGATGCCACTAAGTCATGGACTTTGAGAAAAGATTGC
887878 CACTAAGTCATGGACTTTGAAGAAAA-GATGCCACTGAGTCATGGACTTTGGGAAGAGA
66 CACTAAGTCATGGACTTTGAAGAAAATG-TGCCACTGAGTCATGGACTTTGGGAAGAGA
* * * *
887936 TGCCACTGAGTCGTGGGCTTTGAGGAAAAGATGCCATTGAGTCATGGACTTTGAGGAAA-ATATG
1 TGCCACTGAGTCGTGGACTTTGAGGAAAAGATGCCACTAAGTCATGGACTTTGAGAAAAGAT-TG
* *
888000 CCACTGAGTCGTGGACTTTGAAGAAAATGTGCCACTGAGTCATGGACTTTGGGAAGAGA
65 CCACTAAGTCATGGACTTTGAAGAAAATGTGCCACTGAGTCATGGACTTTGGGAAGAGA
*
888059 TGCCA-TTACGTCGTGGACTTTGAG
1 TGCCACTGA-GTCGTGGACTTTGAG
888083 AAGAGATTTA
Statistics
Matches: 132, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
122 24 0.18
123 107 0.81
124 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (123 bp):
TGCCACTGAGTCGTGGACTTTGAGGAAAAGATGCCACTAAGTCATGGACTTTGAGAAAAGATTGC
CACTAAGTCATGGACTTTGAAGAAAATGTGCCACTGAGTCATGGACTTTGGGAAGAGA
Found at i:899327 original size:15 final size:14
Alignment explanation
Indices: 899309--899349 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
899299 AAGTAAAGAC
899309 ACAAAAAAACAAAAA
1 ACAAAAAAA-AAAAA
*
899324 ACAAACAAAAAACAA
1 ACAAA-AAAAAAAAA
899339 ACAAAAAAAAA
1 ACAAAAAAAAA
899350 CACAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 14 0.58
16 4 0.17
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (14 bp):
ACAAAAAAAAAAAA
Found at i:899357 original size:10 final size:10
Alignment explanation
Indices: 899311--899359 Score: 71
Period size: 11 Copynumber: 4.6 Consensus size: 10
899301 GTAAAGACAC
899311 AAAAAAACAA
1 AAAAAAACAA
899321 AAAACAAACAA
1 AAAA-AAACAA
899332 AAAACAAACAA
1 AAAA-AAACAA
899343 AAAAAAACACA
1 AAAAAAACA-A
899354 AAAAAA
1 AAAAAA
899360 GGTGCAAAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
10 9 0.24
11 28 0.76
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:900672 original size:31 final size:31
Alignment explanation
Indices: 900636--901194 Score: 623
Period size: 31 Copynumber: 17.7 Consensus size: 31
900626 ATCCTTCTTC
*
900636 TCAAAGTCCACGACTTAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
900667 TCAAAGTCCACGACTCAGTGGCAATCTCTTTC-
1 TCAAAGTCCACGACTCAGTGGC-ATCT-TTTCT
900699 -CAAAGTCCACGACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
900729 TCAAAGTCCACAACTCAGTGGCATC-TCTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
900759 TCAAAGTCCACGAC-CTAGTGGCATCCTTTTCT
1 TCAAAGTCCACGACTC-AGTGGCAT-CTTTTCT
*
900791 TCCAAGTCCACGACTCAGTGGCATCTCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCA--TCTTTTCT
**
900824 TCAAAGTCCACGACTCAGTGGTGTCTTTTC-
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
900854 CCAAAGTCCACAACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
900885 TCAAAGTCCACGACTTAGTGGCAATCTCTT-T
1 TCAAAGTCCACGACTCAGTGGC-ATCTTTTCT
* * *
900916 TCTAAGTCCATGACTCAGTGGCAACTTTTTTTCT
1 TCAAAGTCCACGACTCAGTGGC-A--TCTTTTCT
*
900950 TCAAAGTCCACGACTTAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
900981 TCAAAGTCCACGACTTAGTGGCATCTTTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATC--TTTTCT
* * *
901014 TCAAAGTCCATGACTCAATGGCCTCTCTTT-T
1 TCAAAGTCCACGACTCAGTGGCATCT-TTTCT
* * *
901045 CCTAAAGTCCACAACTTAGTGGCATCTTTTCT
1 TC-AAAGTCCACGACTCAGTGGCATCTTTTCT
* *
901077 TCAAAGTCCACAACTAAGTGGCATCTCTTT-T
1 TCAAAGTCCACGACTCAGTGGCATCT-TTTCT
* * *
901108 CTCAAAGTCCACAACTCAATGGCATCTTTTTT
1 -TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
901140 CTCAAAGTCCACAACTTAGTGGCAATCTTTTC-
1 -TCAAAGTCCACGACTCAGTGGC-ATCTTTTCT
* *
901172 TCAAAGTCCACAACTCCGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
901195 CCCTTTTAAG
Statistics
Matches: 459, Mismatches: 45, Indels: 49
0.83 0.08 0.09
Matches are distributed among these distances:
29 5 0.01
30 56 0.12
31 199 0.43
32 107 0.23
33 71 0.15
34 21 0.05
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.33
Consensus pattern (31 bp):
TCAAAGTCCACGACTCAGTGGCATCTTTTCT
Found at i:900859 original size:95 final size:95
Alignment explanation
Indices: 900636--901194 Score: 619
Period size: 95 Copynumber: 5.9 Consensus size: 95
900626 ATCCTTCTTC
* *
900636 TCAAAGTCCACGACTTAGTGGC-ATCTTTTCTTCAAAGTCCACGA-CTCAGTGGCAATCTCTTTC
1 TCAAAGTCCACGACTCAGTGGCTCTCTTTTC-TCAAAGTCCACGACCT-AGTGGC-ATCT-TTTC
900699 --CAAAGTCCACGACTCAGTGGCA--TCTTTTCT
62 TTCAAAGTCCACGACTCAGTGGCATCTCTTTTCT
* *
900729 TCAAAGTCCACAACTCAGTGGCATCTC-TCT-TCAAAGTCCACGACCTAGTGGCATCCTTTTCTT
1 TCAAAGTCCACGACTCAGTGGC-TCTCTTTTCTCAAAGTCCACGACCTAGTGGCAT-CTTTTCTT
*
900792 CCAAGTCCACGACTCAGTGGCATCTCTTTTCT
64 CAAAGTCCACGACTCAGTGGCATCTCTTTTCT
* * *
900824 TCAAAGTCCACGACTCAGTGG-TGTCTTTTCCCAAAGTCCAC-AACTCAGTGGCATCTTTTCTTC
1 TCAAAGTCCACGACTCAGTGGCTCTCTTTTCTCAAAGTCCACGACCT-AGTGGCATCTTTTCTTC
*
900887 AAAGTCCACGACTTAGTGGCAATCTCTTTTC-
65 AAAGTCCACGACTCAGTGGC-ATCTCTTTTCT
* * * *
900918 T--AAGTCCATGACTCAGTGGCAACTTTTTTTCTTCAAAGTCCACGACTTAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGC-TC-TCTTTTC-TCAAAGTCCACGACCTAGTGGCATCTTTTCT
* *
900981 TCAAAGTCCACGACTTAGTGGCATCTTTTTTCT
63 TCAAAGTCCACGACTCAGTGGCATCTCTTTTCT
* * * *
901014 TCAAAGTCCATGACTCAATGGCCTCTCTTTTC-CTAAAGTCCACAACTTAGTGGCATCTTTTCTT
1 TCAAAGTCCACGACTCAGTGG-CTCTCTTTTCTC-AAAGTCCACGACCTAGTGGCATCTTTTCTT
* *
901078 CAAAGTCCACAACTAAGTGGCATCTCTTTTC-
64 CAAAGTCCACGACTCAGTGGCATCTCTTTTCT
* * * * *
901109 TCAAAGTCCACAACTCAATGGCATCTTTTTTCTCAAAGTCCACAACTTAGTGGCAATCTTTTC-T
1 TCAAAGTCCACGACTCAGTGGC-TCTCTTTTCTCAAAGTCCACGACCTAGTGGC-ATCTTTTCTT
* *
901173 CAAAGTCCACAACTCCGTGGCA
64 CAAAGTCCACGACTCAGTGGCA
901195 CCCTTTTAAG
Statistics
Matches: 409, Mismatches: 32, Indels: 48
0.84 0.07 0.10
Matches are distributed among these distances:
91 6 0.01
92 38 0.09
93 46 0.11
94 36 0.09
95 142 0.35
96 114 0.28
97 8 0.02
98 18 0.04
99 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.33
Consensus pattern (95 bp):
TCAAAGTCCACGACTCAGTGGCTCTCTTTTCTCAAAGTCCACGACCTAGTGGCATCTTTTCTTCA
AAGTCCACGACTCAGTGGCATCTCTTTTCT
Found at i:901234 original size:95 final size:91
Alignment explanation
Indices: 901047--901601 Score: 406
Period size: 95 Copynumber: 5.8 Consensus size: 91
901037 TCTCTTTTCC
* ** *
901047 TAAAGTCCACAACTTAGTGGCATCTTTTCTTCAAAGTCCACAACTAAGTGGCATCTCTTTTCTCA
1 TAAAGTCCACAACTTAGTGGCA-CCTTT-TT-AAAGTCCACAACTCCGTGGCATCTCCTTT-T--
* *
901112 AAGTCCACAAC-TCAATGG--CATCTTTT-TTCT
60 AAGTCCACAACTTC-GTGGCACAT-TTTTCTTTT
* *
901142 CAAAGTCCACAACTTAGTGGCAATCTTTTCTCAAAGTCCACAACTCCGTGGCA-C-CCTTTTAAG
1 TAAAGTCCACAACTTAGTGGC-ACCTTTT-T-AAAGTCCACAACTCCGTGGCATCTCCTTTTAAG
*
901205 TCCACAACTTCGCGGCACATTTTTCTTTT
63 TCCACAACTTCGTGGCACATTTTTCTTTT
* *
901234 TAAAGCCCACAACTTCGTGGCACCTTTTT-AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTA
1 TAAAGTCCACAACTTAGTGGCACCTTTTTAAAGTCCACAACTCCGTGGCAT-C----TCCTTTTA
* * *
901298 AGTCCACAACTCCGTGGCACCTTTTTCTATT
61 AGTCCACAACTTCGTGGCACATTTTTCTTTT
* * * *
901329 TAAAGTCCACAACTCT-GTGGCACCCTTTTAAAGCCCACAACTCCATGGCACTCTTTTTCTTTTA
1 TAAAGTCCACAACT-TAGTGGCACCTTTTTAAAGTCCACAACTCCGTGGCA-TC---TCCTTTTA
* * *
901393 AGTCCACAACTCCGTGGCACCTTTTTCTGTT
61 AGTCCACAACTTCGTGGCACATTTTTCTTTT
* ** * * * ** *
901424 TAAAGTCCACCACTCCGTGGCACCCTTTTAAAGCCCACAATTTTGTGGTACTCTTTTTCCTTTTA
1 TAAAGTCCACAACTTAGTGGCACCTTTTTAAAGTCCACAACTCCGTGGCA-TC----TCCTTTTA
* * * *
901489 AGCCCACAACTCCGTGGCACGTTTTTCTGTT
61 AGTCCACAACTTCGTGGCACATTTTTCTTTT
* * ** *
901520 TAAAGTCTACCACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTA
1 TAAAGTCCACAACTTAGTGGCACCTTTTTAAAGTCCACAACTCCGTGGCA-TC----TCCTTTTA
* *
901585 AGCCCACAACTCCGTGG
61 AGTCCACAACTTCGTGG
901602 TACCTTTATA
Statistics
Matches: 402, Mismatches: 40, Indels: 35
0.84 0.08 0.07
Matches are distributed among these distances:
88 20 0.05
90 15 0.04
91 12 0.03
92 25 0.06
93 4 0.01
94 2 0.00
95 187 0.47
96 136 0.34
97 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (91 bp):
TAAAGTCCACAACTTAGTGGCACCTTTTTAAAGTCCACAACTCCGTGGCATCTCCTTTTAAGTCC
ACAACTTCGTGGCACATTTTTCTTTT
Found at i:901343 original size:34 final size:32
Alignment explanation
Indices: 901049--901995 Score: 594
Period size: 34 Copynumber: 29.8 Consensus size: 32
901039 TCTTTTCCTA
** * **
901049 AAGTCCACAACTTAGTGGCATC-TTTTCTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
** * **
901080 AAGTCCACAACTAAGTGGCATCTCTTTTC-TCA
1 AAGTCCACAACTCCGTGGCACCT-TTTTCTTTT
** * **
901112 AAGTCCACAACTCAATGGCATCTTTTT-TCTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCT-TTT
** * **
901144 AAGTCCACAACTTAGTGGCA-ATCTTTTC-TCA
1 AAGTCCACAACTCCGTGGCACCT-TTTTCTTTT
901175 AAGTCCACAACTCCGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
901202 AAGTCCACAACTTCGCGGCACATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
901235 AAAGCCCACAACTTCGTGGCACC----T-TTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
901263 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTT-TTTCTTTT
901297 AAGTCCACAACTCCGTGGCACCTTTTTCTATTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCT-TTT
*
901330 AAAGTCCACAACTCTGTGGCACC-----CTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
901358 AAAGCCCACAACTCCATGGCACTCTTTTTCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCTTTT
901392 AAGTCCACAACTCCGTGGCACCTTTTTCTGTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCT-TTT
*
901425 AAAGTCCACCACTCCGTGGCACC-----CTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * ** *
901453 AAAGCCCACAATTTTGTGGTACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* *
901488 AAGCCCACAACTCCGTGGCACGTTTTTCTGTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCT-TTT
* *
901521 AAAGTCTACCACTCCGTGGCACC-----CTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
901549 AAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* * *
901584 AAGCCCACAACTCCGTGGTACC----T-TTAT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * * *
901611 AAGTACAGAACTCCATGGCA-CTTTTTTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
901642 AAAGCCCATAACTCCGTAGG-ACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGT-GGCAC-CTTTTT-CTTTT
* * *
901677 AAGCCCACAACTTCGTGGCACC----T-TTGT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
901704 AAGTCCACAACTCCGTGGCACATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * *
901737 AAATCCCACAACTCCGTGGCATCTGTTTCCTTTGT
1 AAGT-CCACAACTCCGTGGCACCT-TTTTCTTT-T
*
901772 ATGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * *
901805 AAAGCCCACAACTTCGTGGCACCTGTTTCGTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * ***
901839 AAGTCCATAACTCTGTGATTCCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* *
901872 AAGTCCATAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
* * *
901905 AAGTCCAAAACTCTGTGGCACCTTTTT-TTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
901936 AAGTCCACGACTCTGTGGCACCTTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT--CTTTT
* * *
901970 AAGCCCACACCTCCATGGCATCCTTT
1 AAGTCCACAACTCCGTGGCA-CCTTT
901996 CCACAACTCC
Statistics
Matches: 736, Mismatches: 104, Indels: 148
0.74 0.11 0.15
Matches are distributed among these distances:
26 2 0.00
27 78 0.11
28 70 0.10
29 11 0.01
30 2 0.00
31 79 0.11
32 79 0.11
33 133 0.18
34 256 0.35
35 26 0.04
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:901393 original size:62 final size:61
Alignment explanation
Indices: 901291--901995 Score: 292
Period size: 62 Copynumber: 11.1 Consensus size: 61
901281 CATCCTTGTT
* *
901291 CCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCTATTTAAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCACAACTCCGTGGCAC
* * *
901352 CCTTTTAAAGCCCACAACTCCATGGCACTCTTTTTCTTTT-AAGTCCACAACTCCGTGGCAC
1 CCTTTTAAAGTCCACAACTCCGTGGCAC-CTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
* * **
901413 CTTTTTCTGTTTAAAGTCCACCACTCCGTGGCACC-----CTTTTAAAGCCCACAATTTTGTGGT
1 C-----CT-TTTAAAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGG-
*
901473 ACTC
59 -CAC
* * * * *
901477 TTTTTCCTTTT-AAGCCCACAACTCCGTGGCACGTTTTTCTGTTTAAAGTCTACCACTCCGTGGC
1 -----CCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCACAACTCCGTGGC
901541 AC
60 AC
*
901543 CCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGCCCACAACTCCGTGGTA-
1 CCTTTTAAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTTAAAGCCCACAACTCCGTGGCAC
* * * * * *
901604 CC-TTTATAAGTACAGAACTCCATGGCA-CTTTTTTTTTTAAAGCCCATAACTCCGTAGGACTC
1 CCTTTTA-AAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGT-GG-CAC
* * * *
901666 TTTTTCCTTTT-AAGCCCACAACTTCGTGGCACC----T-TTGT-AAGTCCACAACTCCGTGGCA
1 -----CCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
901724 C
61 C
* * * * *
901725 ATTTTTCTTTTTAAA-TCCCACAACTCCGTGGCATCTGTTTCCTTTGT-ATGTCCACAACTCCGT
1 ------CCTTTTAAAGT-CCACAACTCCGTGGCACCT-TTTTCTTT-TAAAGCCCACAACTCCGT
901788 GGCAC
57 GGCAC
* * * * * *
901793 CTTTTTCTTTTTAAAGCCCACAACTTCGTGGCACCTGTTTCGTTTT-AAGTCCATAACTCTGTGA
1 C-----C-TTTTAAAGTCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTG-
*
901857 TTC-C
58 -GCAC
* * * * *
901861 TTTTTCCTTTT-AAGTCCATAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCAAAACTCTGTGGC
1 -----CCTTTTAAAGTCCACAACTCCGTGGCACCTT-TTTCTTTTAAAGCCCACAACTCCGTGGC
901924 AC
60 AC
* * * * *
901926 CTTTTTTTTAAAGTCCACGACTCTGTGGCACCTTTTTCCCTTTT-AAGCCCACACCTCCATGGCA
1 C---CTTTTAAAGTCCACAACTCCGTGGCACCTTTTT--CTTTTAAAGCCCACAACTCCGTGGCA
*
901990 T
61 C
901991 CCTTT
1 CCTTT
901996 CCACAACTCC
Statistics
Matches: 495, Mismatches: 79, Indels: 139
0.69 0.11 0.19
Matches are distributed among these distances:
58 4 0.01
59 23 0.05
60 19 0.04
61 89 0.18
62 98 0.20
63 26 0.05
64 28 0.06
65 22 0.04
66 60 0.12
67 54 0.11
68 69 0.14
69 2 0.00
73 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (61 bp):
CCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
Found at i:901532 original size:96 final size:96
Alignment explanation
Indices: 901196--901995 Score: 696
Period size: 95 Copynumber: 8.3 Consensus size: 96
901186 TCCGTGGCAC
* * * * * *
901196 CCTTTTAAGTCCACAACTTCGCGGCACATTTTTCTTTTTAAAGCCCACAACTTCGTGGCA-CCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCACCCTT
* * *
901260 TTTAAGTCCACAACTCCGTGGCA-TCCTTGTT
66 TTAAAGCCCACAACTCCGTGGCACT-CTTTTT
* *
901291 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTATTTAAAGTCCACAACTCTGTGGCACCCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCACCCTT
*
901356 TTAAAGCCCACAACTCCATGGCACTCTTTTT
66 TTAAAGCCCACAACTCCGTGGCACTCTTTTT
*
901387 -CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACCACTCCGTGGCACCCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCACCCTT
* ** *
901451 TTAAAGCCCACAATTTTGTGGTACTCTTTTT
66 TTAAAGCCCACAACTCCGTGGCACTCTTTTT
* * * *
901482 CCTTTTAAGCCCACAACTCCGTGGCACGTTTTTCTGTTTAAAGTCTACCACTCCGTGGCACCCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCACCCTT
*
901547 TTAAAGTCCACAACTCCGTGGCACTCTTTTT
66 TTAAAGCCCACAACTCCGTGGCACTCTTTTT
* * * * * *
901578 CCTTTTAAGCCCACAACTCCGTGGTACC----T-T-TAT-AAGTACAGAACTCCATGGCACTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCAC----
** *
901636 TTTTTTAAAGCCCATAACTCCGTAGG-ACTCTTTTT
62 CCTTTTAAAGCCCACAACTCCGT-GGCACTCTTTTT
* *
901671 CCTTTTAAGCCCACAACTTCGTGGCACC---TT-TG--T-AAGTCCACAACTCCGTGGCACATTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCAC----
* * *
901729 TTCTTTTTAAATCCCACAACTCCGTGGCA-TCTGTTT
62 --CCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
* * * *
901765 CCTTTGTATGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTTCGTGGCACCTG
1 CCTTT-TAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCACC--
* * * *
901830 TTTCGTTTT-AAGTCCATAACTCTGT-G-ATTCCTTTTT
63 ---C-TTTTAAAGCCCACAACTCCGTGGCACT-CTTTTT
* * * *
901866 CCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCT-TTT-AAGTCCAAAACTCTGTGGCACCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTT-TTTCTGTTTAAAGTCCACAACTCCGTGGCACC--
* * * *
901929 TTTTTTAAAGTCCACGACTCTGTGGCAC-CTTTTT
63 -CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
* * *
901963 CCCTTTTAAGCCCACACCTCCATGGCATCCTTT
1 -CCTTTTAAGTCCACAACTCCGTGGCA-CCTTT
901996 CCACAACTCC
Statistics
Matches: 595, Mismatches: 75, Indels: 67
0.81 0.10 0.09
Matches are distributed among these distances:
89 16 0.03
90 2 0.00
91 1 0.00
92 1 0.00
93 73 0.12
94 17 0.03
95 185 0.31
96 147 0.25
97 24 0.04
98 26 0.04
99 25 0.04
100 28 0.05
101 27 0.05
102 23 0.04
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (96 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGTCCACAACTCCGTGGCACCCTT
TTAAAGCCCACAACTCCGTGGCACTCTTTTT
Found at i:901562 original size:28 final size:28
Alignment explanation
Indices: 901518--901576 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
901508 CGTTTTTCTG
* *
901518 TTTAAAGTCTACCACTCCGTGGCACCCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
*
901546 TTTAAAGTCCACAACTCCGTGGCACTCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
901574 TTT
1 TTT
901577 TCCTTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (28 bp):
TTTAAAGTCCACAACTCCGTGGCACCCT
Found at i:901678 original size:93 final size:94
Alignment explanation
Indices: 901545--901796 Score: 339
Period size: 93 Copynumber: 2.7 Consensus size: 94
901535 CGTGGCACCC
* *
901545 TTTTAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGTACCTTTA
1 TTTTAAAGCCCACAACTCCGTGG-ACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTA
*
901610 TAAGTACAGAACTCCATGGCAC-TTTTT-T
65 TAAGTACACAACTCCATGGCACATTTTTCT
* * *
901638 TTTTAAAGCCCATAACTCCGTAGGACTCTTTTTCCTTTTAAGCCCACAACTTCGTGGCACCTTTG
1 TTTTAAAGCCCACAACTCCGT-GGACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTA
* *
901703 TAAGTCCACAACTCCGTGGCACATTTTTCT
65 TAAGTACACAACTCCATGGCACATTTTTCT
* * * *
901733 TTTTAAATCCCACAACTCCGTGG-CATCTGTTTCCTTTGTATGTCCACAACTCCGTGGCACCTTT
1 TTTTAAAGCCCACAACTCCGTGGAC-TCTTTTTCCTTT-TAAGCCCACAACTCCGTGGCACCTTT
901797 TTCTTTTTAA
Statistics
Matches: 140, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
93 77 0.55
94 20 0.14
95 43 0.31
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.35
Consensus pattern (94 bp):
TTTTAAAGCCCACAACTCCGTGGACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTAT
AAGTACACAACTCCATGGCACATTTTTCT
Found at i:901711 original size:27 final size:26
Alignment explanation
Indices: 901671--901729 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
901661 GACTCTTTTT
*
901671 CCTTTTAAGCCCACAACTTCGTGGCA
1 CCTTTTAAGCCCACAACTCCGTGGCA
*
901697 CCTTTGTAAGTCCACAACTCCGTGGCA
1 CCTTT-TAAGCCCACAACTCCGTGGCA
*
901724 CATTTT
1 CCTTTT
901730 TCTTTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.31
Consensus pattern (26 bp):
CCTTTTAAGCCCACAACTCCGTGGCA
Found at i:901917 original size:66 final size:66
Alignment explanation
Indices: 901175--901972 Score: 418
Period size: 61 Copynumber: 12.5 Consensus size: 66
901165 TCTTTTCTCA
* * *
901175 AAGTCCACAACTCCGTGGCA-C-----CCTTTTAAGTCCACAACT-TCGCGGCACATTTTTCTTT
1 AAGTCCACAACTCCGTGGCACCTGTTTCCTTTTAAGTCCAAAACTCT-GTGGCACCTTTTTCTTT
901233 TT
65 TT
* * * * * *
901235 AAAGCCCACAACTTCGTGGCACC----T--TTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCT
1 -AAGTCCACAACTCCGTGGCACCTGTTTCCTTTTAAGTCCAAAACTCTGTGGCA-CCTTTTTCTT
901294 TTT
64 TTT
* *
901297 AAGTCCACAACTCCGTGGCACCT-TTTTCTATTTAAAGTCCACAACTCTGTGGCACC-----CTT
1 AAGTCCACAACTCCGTGGCACCTGTTTCCT-TTT-AAGTCCAAAACTCTGTGGCACCTTTTTCTT
*
901356 TTA
64 TTT
* * * * *
901359 AAGCCCACAACTCCATGGCACTCT-TTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTGT
1 AAGTCCACAACTCCGTGGCAC-CTGTTTCCTTTTAAGTCCAAAACTCTGTGGCACCTTTTTCT-T
*
901423 TTA
64 TTT
* * * * * * *
901426 AAGTCCACCACTCCGTGGCA-C-----CCTTTTAAAGCCCACAATTTTGTGGTACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTGTTTCCTTTT-AAGTCCAAAACTCTGTGGCAC-CTTTTTCTT
901485 TTT
64 TTT
* * * * ** *
901488 AAGCCCACAACTCCGTGGCACGT-TTTTCTGTTTAAAGTCTACCACTCCGTGGCACC-----CTT
1 AAGTCCACAACTCCGTGGCACCTGTTTCCT-TTT-AAGTCCAAAACTCTGTGGCACCTTTTTCTT
*
901547 TTA
64 TTT
* * * * *
901550 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGTA-C-----CTTT
1 AAGTCCACAACTCCGTGGCAC-CTGTTTCCTTTTAAGTCCAAAACTCTGTGGCACCTTTTTCTTT
*
901609 AT
65 TT
* * * ** * * * *
901611 AAGTACAGAACTCCATGGCA-CT-TTTTTTTTTAAAGCCCATAACTCCGTAGG-ACTCTTTTTCC
1 AAGTCCACAACTCCGTGGCACCTGTTTCCTTTT-AAGTCCAAAACTCTGT-GGCAC-CTTTTTCT
901673 TTTT
63 TTTT
* * * * * *
901677 AAGCCCACAACTTCGTGGCACC----T--TTGTAAGTCCACAACTCCGTGGCACATTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTGTTTCCTTTTAAGTCCAAAACTCTGTGGCACCTTTTTCTTTT
901736 T
66 T
* * * * *
901737 AAATCCCACAACTCCGTGGCATCTGTTTCCTTTGTATGTCCACAACTCCGTGGCACCTTTTTCTT
1 AAGT-CCACAACTCCGTGGCACCTGTTTCCTTT-TAAGTCCAAAACTCTGTGGCACCTTTTTCTT
901802 TTT
64 TTT
* * * * *** *
901805 AAAGCCCACAACTTCGTGGCACCTGTTTCGTTTTAAGTCCATAACTCTGTGATTCCTTTTTCCTT
1 -AAGTCCACAACTCCGTGGCACCTGTTTCCTTTTAAGTCCAAAACTCTGTGGCACCTTTTTCTTT
901870 TT
65 TT
*
901872 AAGTCCATAACTCCGTGGCACCT-TGTTCCTTTTAAGTCCAAAACTCTGTGGCACC-TTTT-TTT
1 AAGTCCACAACTCCGTGGCACCTGT-TTCCTTTTAAGTCCAAAACTCTGTGGCACCTTTTTCTTT
*
901934 TA
65 TT
* * *
901936 AAGTCCACGACTCTGTGGCACCTTTTTCCCTTTTAAG
1 AAGTCCACAACTCCGTGGCACCTGTTT-CCTTTTAAG
901973 CCCACACCTC
Statistics
Matches: 588, Mismatches: 98, Indels: 98
0.75 0.12 0.12
Matches are distributed among these distances:
58 7 0.01
59 18 0.03
60 16 0.03
61 140 0.24
62 117 0.20
63 19 0.03
64 32 0.05
65 17 0.03
66 67 0.11
67 59 0.10
68 94 0.16
69 2 0.00
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (66 bp):
AAGTCCACAACTCCGTGGCACCTGTTTCCTTTTAAGTCCAAAACTCTGTGGCACCTTTTTCTTTT
T
Found at i:902180 original size:49 final size:46
Alignment explanation
Indices: 902108--902325 Score: 175
Period size: 48 Copynumber: 4.7 Consensus size: 46
902098 TGGCACAAGC
* * * * *
902108 CCAATATCGTTGACCTTGAATCAGCGCGTTGGCATTTTCATATTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCATTGTC---TTTAAGA
*
902157 CCAATATCGCTGGCCTTGAATCAGCATATTGGAACATTGTCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGG--CATTGTCTTTAAGA
* *
902205 CCAATGTCGCTGGCCTTGACTCAGCACATTGGCA----C---AAG-
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCATTGTCTTTAAGA
* * *
902243 -CATAGTATCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAGA
1 CCA-A-TATCGCTGGCCTTGAATCAGCACATTGGCA--TTGTCTTTAAGA
* *
902292 CGAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCA
902326 CAAGCCCAAT
Statistics
Matches: 135, Mismatches: 19, Indels: 31
0.73 0.10 0.17
Matches are distributed among these distances:
37 2 0.01
38 1 0.01
39 28 0.21
42 1 0.01
45 1 0.01
46 2 0.01
48 65 0.48
49 28 0.21
50 1 0.01
51 6 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (46 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCATTGTCTTTAAGA
Found at i:902261 original size:136 final size:135
Alignment explanation
Indices: 902014--902444 Score: 389
Period size: 136 Copynumber: 3.2 Consensus size: 135
902004 CCGTAGCACC
* * * *
902014 TTTAAGTA-CAATATCGCTGCCCTTGAATCAGCATATTGGCACCTTATCTTCAAGCCCAATGTCG
1 TTTAAG-ACCAATATCGCTGGCCTTGAATCAGCATATTGGAACATTATCTTCAAGACCAATGTCG
* * * * *
902078 CTGACCTTGAATCAACAAATTGGCACAAGCCCAATATCGTTGACCTTGAATCAGCGCGTTGGCAT
65 CTGACCTTGAATCAACAAATTGGCACAAGCACAATATCGTTGACCTTGAATCAACACATTGGCAC
*
902143 TTTCATA
130 CTT-ATA
* *
902150 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGAACATTGTCTTTAAGACCAATGTCGC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGAACATTATCTTCAAGACCAATGTCGC
* * * * * * * *
902215 TGGCCTTGACTCAGCACATTGGCACAAGCATAGTATCGTTGGCCTTGAATCAACATATTGGCACC
66 TGACCTTGAATCAACAAATTGGCACAAGCACAATATCGTTGACCTTGAATCAACACATTGGCACC
* *
902280 TTGTC
131 TTATA
* * * *
902285 TTTAAGACGAATGTCGCTGGCCTTGAATCAGCACATTGG--C---A----CAAGCCCAATGTCGC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGAACATTATCTTCAAGACCAATGTCGC
* * * * * * * * *
902341 TGACCTTGAATCAGCACATTCGCACGAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
66 TGACCTTGAATCAACAAATTGGCACAAGCACAATATCGTTGACCTTGAATCAACACATTGGCACC
*
902406 TTCATC
131 TT-ATA
** * *
902412 TCGAAGACTC-ATGTCGTTGGCCTTGAATCAGCA
1 TTTAAGAC-CAATATCGCTGGCCTTGAATCAGCA
902445 CATCAGCACC
Statistics
Matches: 250, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
126 71 0.28
127 30 0.12
133 1 0.00
135 38 0.15
136 110 0.44
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (135 bp):
TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGAACATTATCTTCAAGACCAATGTCGC
TGACCTTGAATCAACAAATTGGCACAAGCACAATATCGTTGACCTTGAATCAACACATTGGCACC
TTATA
Found at i:902265 original size:87 final size:87
Alignment explanation
Indices: 902161--902353 Score: 287
Period size: 87 Copynumber: 2.2 Consensus size: 87
902151 TTAAGACCAA
* *
902161 TATCGCTGGCCTTGAATCAGCATATTGGAACATTGTCTTTAAGACCAATGTCGCTGGCCTTGACT
1 TATCGCTGGCCTTGAATCAACATATTGGAACATTGTCTTTAAGACCAATGTCGCTGGCCTTGAAT
902226 CAGCACATTGGCACAAGCATAG
66 CAGCACATTGGCACAAGCATAG
* * * *
902248 TATCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAGACGAATGTCGCTGGCCTTGAAT
1 TATCGCTGGCCTTGAATCAACATATTGGAACATTGTCTTTAAGACCAATGTCGCTGGCCTTGAAT
** *
902313 CAGCACATTGGCACAAGCCCAA
66 CAGCACATTGGCACAAGCATAG
* *
902335 TGTCGCTGACCTTGAATCA
1 TATCGCTGGCCTTGAATCA
902354 GCACATTCGC
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 94 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (87 bp):
TATCGCTGGCCTTGAATCAACATATTGGAACATTGTCTTTAAGACCAATGTCGCTGGCCTTGAAT
CAGCACATTGGCACAAGCATAG
Found at i:902348 original size:39 final size:39
Alignment explanation
Indices: 902294--902404 Score: 177
Period size: 39 Copynumber: 2.8 Consensus size: 39
902284 CTTTAAGACG
902294 AATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCC
* * *
902333 AATGTCGCTGACCTTGAATCAGCACATTCGCACGAGCCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCC
* *
902372 AATATCGCTGGCCTTGAATCAGCATATTGGCAC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
902405 CTTCATCTCG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (39 bp):
AATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCC
Found at i:902454 original size:49 final size:47
Alignment explanation
Indices: 902380--902602 Score: 160
Period size: 49 Copynumber: 4.5 Consensus size: 47
902370 CCAATATCGC
* *
902380 TGGCCTTGAATCAGCATATTGGCACCTTCATCTCGAAGACTCATGTCGT
1 TGGCCTTGAATCAGCACATTAGCACCTTCATCTC-AAG-CTCATGTCGT
* * * * *
902429 TGGCCTTGAATCAGCACATCAGCACCTCAACCATCTTTAAGCCCAATGTCAT
1 TGGCCTTGAATCAGCACATTAGCACCT---TCATC-TCAAGCTC-ATGTCGT
* * * * * *
902481 TGGCCTTGAATTAGCATATTGGCACCTTTATCTTCAAGTCTAATGTCGC
1 TGGCCTTGAATCAGCACATTAGCACCTTCATC-TCAAG-CTCATGTCGT
* * * *
902530 TAGTCTTGAATCAGCACATTAGCACCTTCATCCTTAAG-TCCGATATCGT
1 TGGCCTTGAATCAGCACATTAGCACCTTCAT-CTCAAGCT-C-ATGTCGT
* *
902579 TGGCCTTGAATAAGCATATTAGCA
1 TGGCCTTGAATCAGCACATTAGCA
902603 TCTTTAACAT
Statistics
Matches: 133, Mismatches: 32, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
47 1 0.01
49 91 0.68
50 2 0.02
51 2 0.02
52 36 0.27
53 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (47 bp):
TGGCCTTGAATCAGCACATTAGCACCTTCATCTCAAGCTCATGTCGT
Found at i:902506 original size:52 final size:49
Alignment explanation
Indices: 902380--902507 Score: 132
Period size: 52 Copynumber: 2.6 Consensus size: 49
902370 CCAATATCGC
* * *
902380 TGGCCTTGAATCAGCATATTGGCACCTTCATCTCGAAGACTCATGTCGT
1 TGGCCTTGAATCAGCATATTGGCACCTCCATCTCGAAGACCCATGTCAT
* ** **
902429 TGGCCTTGAATCAGCACATCAGCACCTCAACCATCTTTAAG-CCCAATGTCAT
1 TGGCCTTGAATCAGCATATTGGCACCT---CCATCTCGAAGACCC-ATGTCAT
*
902481 TGGCCTTGAATTAGCATATTGGCACCT
1 TGGCCTTGAATCAGCATATTGGCACCT
902508 TTATCTTCAA
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
49 24 0.38
51 2 0.03
52 37 0.59
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
TGGCCTTGAATCAGCATATTGGCACCTCCATCTCGAAGACCCATGTCAT
Found at i:902542 original size:101 final size:99
Alignment explanation
Indices: 902367--902649 Score: 282
Period size: 101 Copynumber: 2.8 Consensus size: 99
902357 CATTCGCACG
** * * * * *
902367 AGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TCGAAGACTCATGTCGTTG
1 AGCCCAATATCATTGGCCTTGAATAAGCATATTGGCACCTTTATCTTCGAAGACTAATGTCGCTA
*
902431 GCCTTGAATCAGCACATCAGCACCTCAACCATCTTTA
66 GCCTTGAATCAGCACATCAGCACCT---CCATCCTTA
* * *
902468 AGCCCAATGTCATTGGCCTTGAATTAGCATATTGGCACCTTTATCTTC-AAGTCTAATGTCGCTA
1 AGCCCAATATCATTGGCCTTGAATAAGCATATTGGCACCTTTATCTTCGAAGACTAATGTCGCTA
* * *
902532 GTCTTGAATCAGCACATTAGCACCTTCATCCTTA
66 GCCTTGAATCAGCACATCAGCACCTCCATCCTTA
* * * * * * * * *
902566 AGTCCGATATCGTTGGCCTTGAATAAGCATATTAGCATCTTTAACATTCCTAAGCCCAATGTCGC
1 AGCCCAATATCATTGGCCTTGAATAAGCATATTGGCACCTTTATC-TT-CGAAGACTAATGTCGC
**
902631 TAGCCTTGTCTCAGCACAT
64 TAGCCTTGAATCAGCACAT
902650 TGGCATTCTT
Statistics
Matches: 152, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
98 44 0.29
99 2 0.01
100 1 0.01
101 103 0.68
102 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (99 bp):
AGCCCAATATCATTGGCCTTGAATAAGCATATTGGCACCTTTATCTTCGAAGACTAATGTCGCTA
GCCTTGAATCAGCACATCAGCACCTCCATCCTTA
Found at i:902652 original size:150 final size:147
Alignment explanation
Indices: 902376--902698 Score: 341
Period size: 150 Copynumber: 2.2 Consensus size: 147
902366 GAGCCCAATA
* * * *
902376 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTCGAAGACTCATGTCGTTGGCCTTGAATC
1 TCGCTGG-CTTGAATCAGCACATTAGCACCTTCATCTCGAAGACTCATATCGTTGGCCTTGAATA
* * * * *
902441 AGCACATCAGCACCTCAACCATCTTTAAGCCCAATGTCATTGGCCTTGAATTAGCATATTGGCAC
65 AGCACATCAGCACCTCAACCATCTCTAAGCCCAATGTCACTAGCCTTGAATCAGCACATTGGCA-
902506 CTT-TATCTTCAAGTCTAATG
129 -TTCT-TCTTCAAGTCTAATG
* * *
902526 TCGCTAGTCTTGAATCAGCACATTAGCACCTTCATC-CTTAAGTC-CGATATCGTTGGCCTTGAA
1 TCGCT-GGCTTGAATCAGCACATTAGCACCTTCATCTC-GAAGACTC-ATATCGTTGGCCTTGAA
* * * * * **
902589 TAAGCATATTAGCATCTTTAA-CAT-TCCTAAGCCCAATGTCGCTAGCCTTGTCTCAGCACATTG
63 TAAGCACATCAGCA-CCTCAACCATCT-CTAAGCCCAATGTCACTAGCCTTGAATCAGCACATTG
902652 GCATTCTTCTTCAAGTCTAATG
126 GCATTCTTCTTCAAGTCTAATG
*
902674 TTGCTGGCTATGAATCAGCACATTA
1 TCGCTGGCT-TGAATCAGCACATTA
902699 TCATTCTTTT
Statistics
Matches: 145, Mismatches: 21, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
147 3 0.02
148 36 0.25
149 4 0.03
150 97 0.67
151 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (147 bp):
TCGCTGGCTTGAATCAGCACATTAGCACCTTCATCTCGAAGACTCATATCGTTGGCCTTGAATAA
GCACATCAGCACCTCAACCATCTCTAAGCCCAATGTCACTAGCCTTGAATCAGCACATTGGCATT
CTTCTTCAAGTCTAATG
Found at i:911582 original size:31 final size:31
Alignment explanation
Indices: 911538--912062 Score: 538
Period size: 31 Copynumber: 16.7 Consensus size: 31
911528 ATCTCTCTCC
911538 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
911569 TC-AAGATCCACGACTCAGTGGCAATCTCTTTC-
1 TCAAAG-TCCACGACTCAGTGGC-ATCT-TTTCT
911601 -CAAAGTCCACGACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* * * *
911631 TCAAAGTCCACAACTCAGTGGCTTC-TCTCC
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
911661 TCAAAGTCCACGACTTAGTGGCATCCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCAT-CTTTTCT
*
911693 TCCAAA-TCCATGACTCAGTGGCATCTCTTTTCT
1 T-CAAAGTCCACGACTCAGTGGCA--TCTTTTCT
** **
911726 TCAAAGTCCACGACTCAGTGGTGTCCCTTC-
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
911756 CCAAAGTCCACAACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
911787 TCAAAGTCCACGACAT-AGGGGCAATCTCGTTT-T
1 TCAAAGTCCACGAC-TCAGTGGC-ATCT--TTTCT
911820 T--AAGTCCACGACTCAGTGGCATCTTTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATC--TTTT-CT
*
911852 TCAAAGTCCACGACTTAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* * *
911883 TCAAAGTCCATGACTTAGTGGCATATTTT-T
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
911913 TCCTAAAGTCCACAACTCAGTGGCATCTTTTCT
1 T-C-AAAGTCCACGACTCAGTGGCATCTTTTCT
* *
911946 TCAAAGTCCACAACTCAGTGGCATCTCTT-T
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
911976 TCACAAATCCACAACTCAGTGGCATCTCTTT-T
1 TCA-AAGTCCACGACTCAGTGGCATCT-TTTCT
* *
912008 CTCAAAGTCCACAACTTAGTGGCAATCTTTTC-
1 -TCAAAGTCCACGACTCAGTGGC-ATCTTTTCT
* *
912040 TCAAAGTCCACAACTCCGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
912063 CCCTTTTAAG
Statistics
Matches: 422, Mismatches: 40, Indels: 65
0.80 0.08 0.12
Matches are distributed among these distances:
29 4 0.01
30 69 0.16
31 194 0.46
32 89 0.21
33 41 0.10
34 25 0.06
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (31 bp):
TCAAAGTCCACGACTCAGTGGCATCTTTTCT
Found at i:911838 original size:157 final size:155
Alignment explanation
Indices: 911538--912061 Score: 648
Period size: 157 Copynumber: 3.3 Consensus size: 155
911528 ATCTCTCTCC
* *
911538 TCAAAGTCCACGACTCAGTGGCATCTTTTCTTC-AAGATCCACGACTCAGTGGCAATCTCTTTCC
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAG-TCCACGACTCAGTGGCTATCTCTTCCC
* * * *
911602 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCTTCTCTCCTCAAAG
65 AAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCT-TTTAAAG
*
911667 TCCACGACTTAGTGGCATC-CTTTTCT
129 TCCACGACTCAGTGGCATCTCTTTTCT
* * *
911693 TCCAAA-TCCATGACTCAGTGGCATCTCTTTTCTTCAAAGTCCACGACTCAGTGG-TGTCCCTTC
1 T-CAAAGTCCACGACTCAGTGGCA--TCTTTTCTTCAAAGTCCACGACTCAGTGGCTATCTCTTC
* *
911756 CCAAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCACGACAT-AGGGGCAATCTCGTTTT
63 CCAAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCACAAC-TCAGTGGC-ATCTC-TTTT
* *
911820 TAAGTCCACGACTCAGTGGCATCTTTTTTCCT
125 AAAGTCCACGACTCAGTGGCATCTCTTTT-CT
* * * * * *
911852 TCAAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCCATGACTTAGTGGCATATTTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGC-TATCTCTTCCC
911917 AAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTTTCACAA
65 AAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTTT-A-AA
* *
911982 ATCCACAACTCAGTGGCATCTCTTTTC-
128 GTCCACGACTCAGTGGCATCTCTTTTCT
* * * *
912009 TCAAAGTCCACAACTTAGTGGCAATCTTTTC-TCAAAGTCCACAACTCCGTGGC
1 TCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGGC
912062 ACCCTTTTAA
Statistics
Matches: 319, Mismatches: 34, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
155 17 0.05
156 57 0.18
157 122 0.38
158 27 0.08
159 96 0.30
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (155 bp):
TCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCTATCTCTTCCCA
AAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTTTAAAGTC
CACGACTCAGTGGCATCTCTTTTCT
Found at i:912069 original size:31 final size:32
Alignment explanation
Indices: 911538--912390 Score: 405
Period size: 31 Copynumber: 26.9 Consensus size: 32
911528 ATCTCTCTCC
* *
911538 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
* **
911569 TC-AAGATCCACGACTCAGTGGCAATCTCTTTC-
1 TCAAAG-TCCACAACTCAGTGGCACCCT-TTTCT
* *
911601 -CAAAGTCCACGACTCAGTGGCA-TCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
** * *
911631 TCAAAGTCCACAACTCAGTGGC-TTC-TCTCC
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
* * *
911661 TCAAAGTCCACGACTTAGTGGCATCCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
** *
911693 TCCAAA-TCCATGACTCAGTGGCATCTCTTTTCT
1 T-CAAAGTCCACAACTCAGTGGCA-CCCTTTTCT
* **
911726 TCAAAGTCCACGACTCAGTGGTGTCCC--TTC-
1 TCAAAGTCCACAACTCAGTGG-CACCCTTTTCT
* *
911756 CCAAAGTCCACAACTCAGTGGCA-TCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
* * * *
911787 TCAAAGTCCACGACAT-AGGGGCAATCTCGTTT-T
1 TCAAAGTCCACAAC-TCAGTGGC-A-CCCTTTTCT
* **
911820 T--AAGTCCACGACTCAGTGGCATCTTTTTTCCT
1 TCAAAGTCCACAACTCAGTGGCA-CCCTTTT-CT
* * *
911852 TCAAAGTCCACGACTTAGTGGCA-TCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
** * **
911883 TCAAAGTCCATGACTTAGTGGCA-TATTTT-T
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
*
911913 TCCTAAAGTCCACAACTCAGTGGCA-TCTTTTCT
1 T-C-AAAGTCCACAACTCAGTGGCACCCTTTTCT
*
911946 TCAAAGTCCACAACTCAGTGGCATCTCTTTTC-
1 TCAAAGTCCACAACTCAGTGGCA-CCCTTTTCT
* *
911978 ACAAA-TCCACAACTCAGTGGCATCTCTTTTC-
1 TCAAAGTCCACAACTCAGTGGCA-CCCTTTTCT
* **
912009 TCAAAGTCCACAACTTAGTGGCAATCTTTTC-
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
*
912040 TCAAAGTCCACAACTCCGTGGCACCC--TT-T
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
* * **
912069 T--AAGTCTACAACTCCGTGGCACATTTTTCTTT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTC--T
* * * *
912101 TTAAAGCCCACAACTCCGTGGCATCCTTGTTCCT
1 TCAAAGTCCACAACTCAGTGGCACCCTT-TT-CT
** * *
912135 TTTAAGTCCACAACTCTGTGGCACCTTTTTCTGT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTC--T
* * * *
912169 TTAAAGTCCACAACTCTGTGACACCC--AT-T
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
* * * *
912198 T-AAAGCCCACAACTCCGTGGCATTCTTTTTCCT
1 TCAAAGTCCACAACTCAGTGGCA-CCCTTTT-CT
** * * *
912231 TTTAAGTCCATAACTCTGTGGCACCTTTTTCTGT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTC--T
* * * *
912265 TTAAAGTCCACCACTCCGTGGTACCC--TT-T
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
* * *
912294 T-AAAGCCCATAACTTC-GTGGCACTCTTTTTCCT
1 TCAAAGTCCACAAC-TCAGTGGCAC-CCTTTT-CT
** * * *
912327 TTTAAGCCCACAACTCCGTGGCACCTTTTTCTAT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTTC--T
* * * *
912361 TTAAAGTCCACCACTCTGTAGCACCCTTTT
1 TCAAAGTCCACAACTCAGTGGCACCCTTTT
912391 AAAGCCCACA
Statistics
Matches: 670, Mismatches: 91, Indels: 119
0.76 0.10 0.14
Matches are distributed among these distances:
27 20 0.03
28 34 0.05
29 17 0.03
30 61 0.09
31 210 0.31
32 90 0.13
33 63 0.09
34 172 0.26
35 2 0.00
36 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (32 bp):
TCAAAGTCCACAACTCAGTGGCACCCTTTTCT
Found at i:912096 original size:27 final size:27
Alignment explanation
Indices: 912043--912096 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
912033 TCTTTTCTCA
*
912043 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACACTTTT
* *
912070 AAGTCTACAACTCCGTGGCACATTTTT
1 AAGTCCACAACTCCGTGGCACACTTTT
912097 CTTTTTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACACTTTT
Found at i:912115 original size:34 final size:32
Alignment explanation
Indices: 911918--912796 Score: 452
Period size: 34 Copynumber: 27.6 Consensus size: 32
911908 TTTTTTCCTA
* **
911918 AAGTCCACAACTCAGTGGCA-TCTTTT-CTTCA
1 AAGTCCACAACTCCGTGGCACT-TTTTCCTTTT
*
911949 AAGTCCACAACTCAGTGGCATCTCTTTTCAC----
1 AAGTCCACAACTCCGTGGCA-CT-TTTTC-CTTTT
* * **
911980 AAATCCACAACTCAGTGGCATCTCTTTT-C-TCA
1 AAGTCCACAACTCCGTGGCA-CT-TTTTCCTTTT
** * **
912012 AAGTCCACAACTTAGTGGCAATCTTTT-C-TCA
1 AAGTCCACAACTCCGTGGCACT-TTTTCCTTTT
912043 AAGTCCACAACTCCGTGGCAC-----CCTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTCCTTTT
* *
912070 AAGTCTACAACTCCGTGGCACATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCAC-TTTTTCCTTTT
* *
912103 AAAGCCCACAACTCCGTGGCATCCTTGTTCCTTTT
1 -AAGTCCACAACTCCGTGGCA--CTTTTTCCTTTT
*
912138 AAGTCCACAACTCTGTGGCACCTTTTT-CTGTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTCCT-TTT
* * *
912171 AAAGTCCACAACTCTGTGACAC-----CCATTTA
1 -AAGTCCACAACTCCGTGGCACTTTTTCC-TTTT
*
912200 AAGCCCACAACTCCGTGGCATTCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA--CTTTTTCCTTTT
* *
912234 AAGTCCATAACTCTGTGGCACCTTTTT-CTGTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTCCT-TTT
* *
912267 AAAGTCCACCACTCCGTGGTAC-----CCTTTT
1 -AAGTCCACAACTCCGTGGCACTTTTTCCTTTT
* * *
912295 AAAGCCCATAACTTCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCA--CTTTTTCCTTTT
*
912330 AAGCCCACAACTCCGTGGCACCTTTTT-CTATTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTCCT-TTT
* * *
912363 AAAGTCCACCACTCTGTAGCAC-----CCTTTT
1 -AAGTCCACAACTCCGTGGCACTTTTTCCTTTT
* *
912391 AAAGCCCACAACTCCATGGCACTCTCTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCACT-T-TTTCCTTTT
*
912426 AAGCCCACAACTCCGTGGCA------CCTTTGT
1 AAGTCCACAACTCCGTGGCACTTTTTCCTTT-T
* *
912453 AAGTCCACAACTCCATGGCACTTTTTTCTATTT
1 AAGTCCACAACTCCGTGGCACTTTTTCCT-TTT
* *
912486 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCA--CTTTTTCCTTTT
* * *
912521 AAGCCCA-AACTCCATGGCAC---TT--TTGT
1 AAGTCCACAACTCCGTGGCACTTTTTCCTTTT
* *
912547 AAGTCCACAACTCTGTGGCATCTGTTTCCTTTGT
1 AAGTCCACAACTCCGTGGCA-CTTTTTCCTTT-T
* *
912581 AAGTCCACAACTCCGTGCCACCTTTTT--TTTA
1 AAGTCCACAACTCCGTGGCA-CTTTTTCCTTTT
*
912612 AAG-CCTACAACTCCGTGGCATCTGTTTCCTTTT
1 AAGTCC-ACAACTCCGTGGCA-CTTTTTCCTTTT
* * *
912645 AAGTCCACAACTCTGTGATTC-CCTTTTCCTTTT
1 AAGTCCACAACTCCGTG--GCACTTTTTCCTTTT
* * *
912678 AAGTCCACAACTGCGTGACACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTCCTTTT
* * ** * *
912711 AAGACTACAACTTTGTGGCACCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTCCTTTT
*
912743 AAGTCCACGACTCCGTGGCACTCTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCACT-TTTT-CCTTTT
* *
912777 AAGCCCACACCTCCGTGGCA
1 AAGTCCACAACTCCGTGGCA
912797 TCCCTTCCAT
Statistics
Matches: 670, Mismatches: 100, Indels: 153
0.73 0.11 0.17
Matches are distributed among these distances:
26 15 0.02
27 50 0.07
28 59 0.09
29 8 0.01
30 5 0.01
31 100 0.15
32 52 0.08
33 126 0.19
34 218 0.33
35 28 0.04
36 9 0.01
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACTTTTTCCTTTT
Found at i:912184 original size:192 final size:189
Alignment explanation
Indices: 911916--912769 Score: 618
Period size: 192 Copynumber: 4.5 Consensus size: 189
911906 TATTTTTTCC
* * * ** * * *
911916 TAAAGTCCACAACTCAGTGGCATCTT-TT-CTTCAAAGTCCACAACTCAGTGGCATCTCTTTTC-
1 TAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCT-TTTTCT
** * * *
911978 -ACAAA-TCCACAACTCAGTGGCATCTCTTTTCTCAAAGTCCACAACTTAGTGGCAATC-TTTT-
65 TTTAAAGTCCACAACTCTGTGGCA-CTCTTTT-T-AAAGCCCACAACTCAGTGGCAATCTTTTTC
* * *
912039 C-TCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCTACAACTCCGTGGCACATTTTTCTTTT
127 CTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC-TTTTTCCTTT
* *
912102 TAAAGCCCACAACTCCGTGGCATCCTTGTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCT
1 TAAAGCCCACAACTCCGTGGCA-CCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
* ** * *
912167 GTTTAAAGTCCACAACTCTGTGACAC-CCATTTAAAGCCCACAACTCCGTGGCATTCTTTTTCCT
65 -TTTAAAGTCCACAACTCTGTGGCACTCTTTTTAAAGCCCACAACTCAGTGGCAATCTTTTTCCT
* * * * *
912231 TTTAAGTCCATAACTCTGTGGCACCTTTTTCTGTTTAAAGTCCACCACTCCGTGGTAC-----CC
129 TTAAAGTCCACAACTCCGTGGCACC-----CT-TTT-AAGTCCACAACTCCGTGGCACTTTTTCC
912291 TTT
187 TTT
* * *
912294 TAAAGCCCATAACTTCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
1 TAAAGCCCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
* * * * *
912359 ATTTAAAGTCCACCACTCTGTAGCAC-CCTTTTAAAGCCCACAACTCCA-TGGCACTCTCTTTCC
65 -TTTAAAGTCCACAACTCTGTGGCACTCTTTTTAAAGCCCACAACT-CAGTGGCAATCTTTTTCC
* * * *
912422 TTTTAAGCCCACAACTCCGTGGCA-CCTTTGTAAGTCCACAACTCCATGGCACTTTTTTCTATT
128 TTTAAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACTTTTTCCT-TT
* * *
912485 TAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCA-AACTCCATGGCA-C---TT-T
1 TAAAGCCCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
* * * * * * *
912544 TGT-AAGTCCACAACTCTGTGGCATCTGTTTCCTTTGTAAGTCCACAACTCCGT-GCCACCTTTT
65 TTTAAAGTCCACAACTCTGTGGCA-CT-CTT--TTT-AAAGCCCACAACTCAGTGGCAATCTTTT
* * *
912607 T--TTTAAAG-CCTACAACTCCGTGGCATCTGTTTCCTTTTAAGTCCACAACTCTGTGATTC-CC
125 TCCTTTAAAGTCC-ACAACTCCGTGGCA-C-----CCTTTTAAGTCCACAACTCCGTG--GCACT
912668 TTTTCCTTT
181 TTTTCCTTT
* * * * * **
912677 T-AAGTCCACAACTGCGTGACACCTTGTTCCTTTTAAGACTACAACTTTGTGGCACC-TTTTCTT
1 TAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * *
912740 TTTAAGTCCACGACTCCGTGGCACTCTTTT
66 TTAAAGTCCACAACTCTGTGGCACTCTTTT
912770 CCCTTTTAAG
Statistics
Matches: 538, Mismatches: 81, Indels: 92
0.76 0.11 0.13
Matches are distributed among these distances:
183 18 0.03
184 3 0.01
185 23 0.04
186 46 0.09
187 3 0.01
188 38 0.07
189 42 0.08
190 33 0.06
191 95 0.18
192 173 0.32
193 13 0.02
194 5 0.01
195 5 0.01
196 20 0.04
197 3 0.01
198 18 0.03
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (189 bp):
TAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTT
TTAAAGTCCACAACTCTGTGGCACTCTTTTTAAAGCCCACAACTCAGTGGCAATCTTTTTCCTTT
AAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTTTTTCCTTT
Found at i:912216 original size:96 final size:96
Alignment explanation
Indices: 912099--912769 Score: 532
Period size: 96 Copynumber: 7.0 Consensus size: 96
912089 ACATTTTTCT
* * *
912099 TTTTAAAGCCCACAACTCCGTGGCA-TCCTTGTTCCTTTTAAGTCCACAACTCTGTGGCACCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACT-CTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTT
*
912163 TTCTGTTTAAAGTCCACAACTCTGTGACACCC
65 TTCTGTTTAAAGTCCACCACTCTGTGACACCC
* * * * *
912195 ATTTAAAGCCCACAACTCCGTGGCATTCTTTTTCCTTTTAAGTCCATAACTCTGTGGCACCTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTT
* **
912260 TCTGTTTAAAGTCCACCACTCCGTGGTACCC
66 TCTGTTTAAAGTCCACCACTCTGTGACACCC
* *
912291 TTTTAAAGCCCATAACTTCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTT
*
912356 TCTATTTAAAGTCCACCACTCTGT-AGCACCC
66 TCTGTTTAAAGTCCACCACTCTGTGA-CACCC
* *
912387 TTTTAAAGCCCACAACTCCATGGCACTCTCTTTCCTTTTAAGCCCACAACTCCGTGGCACC---T
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTT
* ** * *
912449 T-TG--T-AAGTCCACAACTCCATGGCACTTTTTTC
66 TCTGTTTAAAGTCCACCACTCTGTGACAC-----CC
* *
912481 TATTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCA-AACTCCATGGCA-C--T
1 T-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTT
* *
912542 TT-TG--T-AAGTCCACAACTCTGTGGCATCTGTTTCC
65 TTCTGTTTAAAGTCCACCACTCTGTGACA-C-----CC
* * * * *
912576 TTTGT-AAGTCCACAACTCCGTGCCAC-CTTTTT--TTTAAAGCCTACAACTCCGTGGCATCTGT
1 TTT-TAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCT-T
* * *
912637 TTCCT-TTT-AAGTCCACAACTCTGTGATTCCCTTTTCC
64 TTTCTGTTTAAAGTCCACCACTCTGTGA--CAC----CC
* * * * * * **
912674 TTTT-AAGTCCACAACTGCGTGACAC-CTTGTTCCTTTTAAGACTACAACTTTGTGGCACC-TTT
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTT
* * * * *
912736 TCT-TTTTAAGTCCACGACTCCGTGGCACTC
66 TCTGTTTAAAGTCCACCACTCTGTGACACCC
912766 TTTT
1 TTTT
912770 CCCTTTTAAG
Statistics
Matches: 490, Mismatches: 60, Indels: 54
0.81 0.10 0.09
Matches are distributed among these distances:
89 16 0.03
90 1 0.00
91 9 0.02
92 17 0.03
93 10 0.02
94 56 0.11
95 50 0.10
96 232 0.47
97 35 0.07
98 41 0.08
99 22 0.04
100 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (96 bp):
TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTT
TCTGTTTAAAGTCCACCACTCTGTGACACCC
Found at i:912389 original size:61 final size:61
Alignment explanation
Indices: 912324--912513 Score: 242
Period size: 61 Copynumber: 3.1 Consensus size: 61
912314 CACTCTTTTT
* * * *
912324 CCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTATTTAAAGTCCACCACTCTGTAGCAC
1 CCTTTTAAGCCCACAACTCCATGGCACCTTTTTCTATTTAAAGCCCACAACTCTGTGGCAC
* *
912385 CCTTTTAAAGCCCACAACTCCATGGCACTCTCTTTCCT-TTT-AAGCCCACAACTCCGTGGCA-
1 CCTTTT-AAGCCCACAACTCCATGGCAC-CT-TTTTCTATTTAAAGCCCACAACTCTGTGGCAC
* *
912446 CCTTTGTAAGTCCACAACTCCATGGCACTTTTTTCTATTTAAAGCCCACAACTCTGTGGCAC
1 CCTTT-TAAGCCCACAACTCCATGGCACCTTTTTCTATTTAAAGCCCACAACTCTGTGGCAC
*
912508 TCTTTT
1 CCTTTT
912514 TCCTTTTAAG
Statistics
Matches: 111, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
59 5 0.05
60 4 0.04
61 51 0.46
62 41 0.37
63 5 0.05
64 5 0.05
ACGTcount: A:0.23, C:0.34, G:0.12, T:0.32
Consensus pattern (61 bp):
CCTTTTAAGCCCACAACTCCATGGCACCTTTTTCTATTTAAAGCCCACAACTCTGTGGCAC
Found at i:912460 original size:27 final size:26
Alignment explanation
Indices: 912420--912478 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
912410 CACTCTCTTT
*
912420 CCTTTTAAGCCCACAACTCCGTGGCA
1 CCTTTTAAGCCCACAACTCCATGGCA
*
912446 CCTTTGTAAGTCCACAACTCCATGGCA
1 CCTTT-TAAGCCCACAACTCCATGGCA
*
912473 CTTTTT
1 CCTTTT
912479 TCTATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.31
Consensus pattern (26 bp):
CCTTTTAAGCCCACAACTCCATGGCA
Found at i:912608 original size:94 final size:92
Alignment explanation
Indices: 912385--912793 Score: 317
Period size: 94 Copynumber: 4.2 Consensus size: 92
912375 TCTGTAGCAC
* * * * *
912385 CCTTTTAAAGCCCACAACTCCATGGCACTCTCTTTCCTTTTAAGCCCACAACTCCGTGGCACCTT
1 CCTTTT-AAGTCCACAACTCCGTGACAC-CTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTTT
**
912450 TGTAAGTCCACAACTCCATGGCA-CTTTTT
64 TGTAAGTCCACAACTCTGTGGCATC-TTTT
* * * * *
912479 TCTATTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCA-AACTCCATGGCACTT
1 CCT-TTT-AAGTCCACAACTCCGTGACAC-CTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTT
912543 TTGTAAGTCCACAACTCTGTGGCATCTGTTT
63 TTGTAAGTCCACAACTCTGTGGCATCT-TTT
* * *
912574 CCTTTGTAAGTCCACAACTCCGTGCCACCTTTTT--TTTAAAGCCTACAACTCCGTGGCATCTGT
1 CCTTT-TAAGTCCACAACTCCGTGACACCTTTTTCCTTTTAAGCCCACAACTCCGTGGCA-C---
*
912637 TTCCTTTTAAGTCCACAACTCTGT-G-ATTCCCTTTT
61 TT--TTGTAAGTCCACAACTCTGTGGCA-T--CTTTT
* * * * **
912672 CCTTTTAAGTCCACAACTGCGTGACACCTTGTTCCTTTTAAGACTACAACTTTGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGACACCTTTTTCCTTTTAAGCCCACAACTCCGTGGCA-C---T
* * *
912737 CTTTTTAAGTCCACGACTCCGTGGCACTCTTTT
62 -TTTGTAAGTCCACAACTCTGTGGCA-TCTTTT
* *
912770 CCCTTTTAAGCCCACACCTCCGTG
1 -CCTTTTAAGTCCACAACTCCGTG
912794 GCATCCCTTC
Statistics
Matches: 264, Mismatches: 31, Indels: 35
0.80 0.09 0.11
Matches are distributed among these distances:
91 9 0.03
92 11 0.04
93 7 0.03
94 58 0.22
95 49 0.19
96 3 0.01
97 27 0.10
98 50 0.19
99 47 0.18
100 3 0.01
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.35
Consensus pattern (92 bp):
CCTTTTAAGTCCACAACTCCGTGACACCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTTTTG
TAAGTCCACAACTCTGTGGCATCTTTT
Found at i:912630 original size:65 final size:63
Alignment explanation
Indices: 911918--912796 Score: 520
Period size: 62 Copynumber: 13.8 Consensus size: 63
911908 TTTTTTCCTA
* ** * **
911918 AAGTCCACAACTCAGTGGCATCTTTT-CTTCAAAGTCCACAACTCAGTGGCATCTCTTTTC--AC
1 AAGTCCACAACTCCGTGGCATCTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C-CTTTTCTTTT
* * * ** ** * **
911980 AAATCCACAACTCAGTGGCATCTCTTTTC-TCAAAGTCCACAACTTAGTGGCAATCTTTTC-TCA
1 AAGTCCACAACTCCGTGGCATCT-TTTCCTTTTAAGTCCACAACTCCGTGGC-ACCTTTTCTTTT
* *
912043 AAGTCCACAACTCCGTGGCA-C----CCTTTTAAGTCTACAACTCCGTGGCACATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTC-TTTT
* *
912103 AAAGCCCACAACTCCGTGGCATCCTTGTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTG
1 -AAGTCCACAACTCCGTGGCAT-CTT-TTCCTTTTAAGTCCACAACTCCGTGGCACC-TTTTCT-
912168 TTT
61 TTT
* * * * *
912171 AAAGTCCACAACTCTGTGACA-C----CCATTTAAAGCCCACAACTCCGTGGCATTCTTTTTCCT
1 -AAGTCCACAACTCCGTGGCATCTTTTCC-TTTTAAGTCCACAACTCCGTGGCA--CCTTTT-CT
912231 TTT
61 TTT
* * * * * *
912234 AAGTCCATAACTCTGTGGCACCTTTTTCTGTTTAAAGTCCACCACTCCGTGGTACC----CTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCT-TTT-AAGTCCACAACTCCGTGGCACCTTTTCTTTT
* * * *
912295 AAAGCCCATAACTTCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTA
1 -AAGTCCACAACTCCGTGGCA-TC-TTTTCCTTTTAAGTCCACAACTCCGTGGCACC-TTTTCT-
912360 TTT
61 TTT
* * * * *
912363 AAAGTCCACCACTCTGTAGCA-C----CCTTTTAAAGCCCACAACTCCATGGCACTCTCTTTCCT
1 -AAGTCCACAACTCCGTGGCATCTTTTCCTTTT-AAGTCCACAACTCCGTGGCAC-CT-TTT-CT
912423 TTT
61 TTT
* * *
912426 AAGCCCACAACTCCGTGGCA------CCTTTGTAAGTCCACAACTCCATGGCACTTTTTTCTATT
1 AAGTCCACAACTCCGTGGCATCTTTTCCTTT-TAAGTCCACAACTCCGTGGCAC-CTTTTCT-TT
912485 T
63 T
* * * * *
912486 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCA-AACTCCATGGCA-C--TT-TTG
1 -AAGTCCACAACTCCGTGGCA-TC-TTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTT
912546 T
63 T
* *
912547 AAGTCCACAACTCTGTGGCATCTGTTTCCTTTGTAAGTCCACAACTCCGTGCCACCTTTT-TTTT
1 AAGTCCACAACTCCGTGGCATCT-TTTCCTTT-TAAGTCCACAACTCCGTGGCACCTTTTCTTTT
* *
912611 AAAG-CCTACAACTCCGTGGCATCTGTTTCCTTTTAAGTCCACAACTCTGTGATTC-CCTTTTCC
1 -AAGTCC-ACAACTCCGTGGCATCT-TTTCCTTTTAAGTCCACAACTCCGTG--GCACCTTTT-C
912674 TTTT
60 TTTT
* * * * * **
912678 AAGTCCACAACTGCGTGACACCTTGTTCCTTTTAAGACTACAACTTTGTGGCACCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCATCTT-TTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC-TTTT
* * *
912743 AAGTCCACGACTCCGTGGCACTCTTTTCCCTTTTAAGCCCACACCTCCGTGGCA
1 AAGTCCACAACTCCGTGGCA-TCTTTT-CCTTTTAAGTCCACAACTCCGTGGCA
912797 TCCCTTCCAT
Statistics
Matches: 661, Mismatches: 85, Indels: 138
0.75 0.10 0.16
Matches are distributed among these distances:
57 2 0.00
58 23 0.03
59 12 0.02
60 33 0.05
61 90 0.14
62 144 0.22
63 64 0.10
64 39 0.06
65 64 0.10
66 68 0.10
67 24 0.04
68 93 0.14
69 5 0.01
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (63 bp):
AAGTCCACAACTCCGTGGCATCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTT
Found at i:912989 original size:49 final size:49
Alignment explanation
Indices: 912917--913132 Score: 197
Period size: 48 Copynumber: 4.7 Consensus size: 49
912907 GCACAAGCCT
* *
912917 AATATCACTGGCCTTGAATCAGCACATTGGCATCTTTATCTTTAAGACC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCTTTAAGACC
* * *
912966 AATATCGTTGGCCTTGAATCAGCATATTGGCA-CCTTGTCTTTAAGACC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCTTTAAGACC
* * *
913014 AATGTCGCTGGCCTTGACTCAGCACATT---A-GC--A----TAAG-CC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCTTTAAGACC
* * * * *
913052 TAGTATCGCTGGCCCTGAATCAGTATATTGGCA-CCTTGTCTTTAAGACC
1 -AATATCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCTTTAAGACC
* *
913101 AATGTCACTGGCCTTGAATCAGCACATTGGCA
1 AATATCGCTGGCCTTGAATCAGCACATTGGCA
913133 CAAGCCCGAT
Statistics
Matches: 131, Mismatches: 25, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
38 2 0.02
39 26 0.20
42 2 0.02
45 2 0.02
48 68 0.52
49 31 0.24
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (49 bp):
AATATCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCTTTAAGACC
Done.