Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold371
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1142270
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.15
Warning! 606714 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:8047 original size:21 final size:21
Alignment explanation
Indices: 8021--8075 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
8011 GTTACAAGCA
*
8021 ATGTATCGATACAATT-TCATC
1 ATGTATCGATACAATTGTC-CC
8042 ATGTATCGATAC-ATTGTCCC
1 ATGTATCGATACAATTGTCCC
*
8062 ACGTATCGATACAA
1 ATGTATCGATACAA
8076 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACAATTGTCCC
Found at i:8148 original size:19 final size:19
Alignment explanation
Indices: 8104--8177 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
8094 CTGCCAATCT
**
8104 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATT-AA
*
8124 CATGTATTGATACAATTAA
1 CATGTATCGATACAATTAA
*
8143 CATGTATCGATGCAATTAA
1 CATGTATCGATACAATTAA
*
8162 CATGTATCAATACAAT
1 CATGTATCGATACAAT
8178 GTATCGATGC
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 31 0.66
20 16 0.34
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (19 bp):
CATGTATCGATACAATTAA
Found at i:8859 original size:159 final size:154
Alignment explanation
Indices: 8636--18681 Score: 941
Period size: 158 Copynumber: 63.5 Consensus size: 154
8626 CTTTGTTGTG
* * * * * * *
8636 AAACCAAAGCATCAATATCGTGTTTCCTAATGAGAAGACTAT-T-TTTATGGTGCCTAACCCTGA
1 AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTT-TGGTGCCTAATCTTGA
* *
8699 AAATAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACCTTGATTTTATA
63 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-A
8764 AAAAACGGTAGAAAGAAAAGCTTTTCTTGC
127 AAAAACGG--GAAAGAAAAGCTTTTCTTGC
* *
8794 AACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCAAATCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * * *** * *
8859 ATA-ATTGGAGACT-GT-TACGAG-AATCGATGCTTGTCCTATTTAAG-GGTGGACTTTCATGTT
64 A-AGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTT
* * *
8919 AAGGAAAATA-GGGCAAAGAAAAGATTTCCATGC
125 AA--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * ***
8952 AAAAGAAAGTCATCAATGTCATTTATCCTTATG-AGGAGAATGTGTTTATAGTGCCTAATCACAA
1 AAACCAAAG-CATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
** * * * * *
9016 AAAGAATGAAGATCAGTACT-AGAATCCATGTTTGTCTTATTT--GAGGCACGAACTTAGACTTT
63 AAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTT
*** * * * *
9078 TGAAAAATTGGAGGGAAG-AAAGCCTTTGTAGC
124 T-AAAAAAACG-GGAAAGAAAAGCTTTTCTTGC
* * * * *
9110 GAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGACTATGT-TTATGGTGCCTAATGC-TG
1 -AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAAT-CTTG
* *
9173 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
* *
9238 CAAAAACGGCGGAAAGAAAAGCTTTTCTTTC
126 AAAAAAC-G-GGAAAGAAAAGCTTTTCTTGC
* * * * * * * * * *
9269 GACACTACAGCATCAATGTCATATTTCCTAGTGAAGGCAATGTATTTTGGCTTCCCAATCTGGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* ** * *** * * * * *
9334 AA-AAAGGGAGACCATTACAAGCA-TCGATGCTTGTCTTATTCAAG-GG-ATGAACTTTCATGTT
64 AAGAATGGG-GATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
* * **
9395 AAGGAAAATA-GGGCAAAGAAAAGATTTCCACGC
125 AA--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * ** * ***
9428 AAAAGAAAATCATCAATGTCATTTATCCTAAT-TAGGAGAATGTGTTTATTATACCTAATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
** * * * * * * * ** * * * *
9492 AAAGAATGAAGATCATTACT-AGAATCCATGTTAGTCTCATTTAAGACACGATCTTAGACTTTAA
63 AAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTAA
* * * *
9556 AAAAATTGTGAGAAG-AAAGCCTTTATTGC
127 AAAAA-CGGGA-AAGAAAAGCTTTTCTTGC
* * * * * * * *
9585 GAAACGAAAGCATCAATATCGTGTTTCCTAATGAGAAGACTAT-T-TTTATGGTGCCTAACCCTG
1 -AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTT-TGGTGCCTAATCTTG
*
9648 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAT
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
*
9713 CAAAAACGGTAGAAAGAAAAGCTTTTCTTGC
126 AAAAAACGG--GAAAGAAAAGCTTTTCTTGC
* * * *
9744 AACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCAAATCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * ** * *** * *
9809 AAGATTGGAGACT-GT-TACGAGAATTGATGCATGTATT-TTTCAAG-GGTTGACTTTCATGTTA
64 AAGAATGGGGATTAGTGT--GAGTATTCATGTTTGTCTTATTT-AAGAGGCAAACTTTGATTTTA
* ***
9870 AGGAAAATA-GGGCAAAGAAAAGATTTTCACAC
126 A--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** ** * * * * ***
9902 AAAAGAAAATTATCAATGTCATTTATCCTAATAAAGAG-AATGTGTCTATAGTGCCTAATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GCAATGTGT-TTTGGTGCCTAATCTTGA
** * * * * * * * * * *
9966 AAAGAATGAAGATCATTACT-AGAATCCACGTTTATCTCATTT--GAGGCACGAACTTAGACTTT
63 AAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
** * * * *
10028 AGAAAAATTGGTGGGAAGAAAA-CCTTTGTAGC
125 A-AAAAA-ACG-GGAAAGAAAAGCTTTTCTTGC
* * ** ** * * *
10060 GAAACCAAAGCATCCATATTGTGTATCCTAATG-AGAAAACTATGTTTATGGTGCCTAATCCTAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAA-TGTGTTT-TGGTGCCTAATCTTGA
* * * * * *
10124 AAAGAA-AGGGACTAGTGTGAGTATTCATGTTTGTCTTATTTAAGA-G-AAACTTTAACTCTATC
63 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-A
*
10186 AAAAATGGCGAGAAGAAAAGCTTTTCTTGC
127 AAAAACGG-GA-AAGAAAAGCTTTTCTTGC
* * * * * *
10216 GACACCAAAGCATCAATATCGTGTATCCTAACGAAAGCAATGTGTTTTGGCTACCTAATCTTG-A
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * *** * * * * *
10280 AAGTAATGGAGACT-GTCACAAG-AATCGATGTTTGTCTTTTTTATG-GGATAAACTTTAATTTT
64 AAG-AATGGGGATTAGT-GTGAGTATTC-ATGTTTGTCTTATTTAAGAGG-CAAACTTTGATTTT
* * *
10342 AAGGAAAGTA-GGGCAAAGAAAAGATTTTCATGC
125 AA--AAA-AACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * **** **
10375 AAAAGAAAATCATCAATATCAT-TCATCCTAAAG-AGGAGAATGTGTTTATAACACCTAATC-AC
1 -AAACCAAAGCATCAATGTCATGT-ATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTG
** ** * * * * * * * *
10437 AAATAGAGCGAAGATCT-TTACT-AGAATCCAAGTTTGTCTCACTT--GAGGCATGAA-TCTAGA
62 AAA-AGAATGGGGAT-TAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACT-TTGA
* * * * * *
10497 CTTTAAAAAAATTTGTGGGAAG-AAAGCCTTTATTAC
121 TTTTAAAAAAA--CG-GGAAAGAAAAGCTTTTCTTGC
* * * * * *
10533 GAAACCAAAGCATCAATATCGTGTTTCCTAATGAGTAGACTAT-T-TTTATGGTGCCT-ATGCCT
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGA--AGGCAATGTGTTT-TGGTGCCTAAT-CTT
* * *
10595 G---AGAATGGGGATTAGTGTGAGTGTTCATGTTTGTTTTATTTAAGAGGTAAACTTTGATTCTA
61 GAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-T-
*
10657 TAAAAAATA-GTAGAAAGAAAAGCTTTTCTTGC
124 TAAAAAA-ACG-GGAAAGAAAAGCTTTTCTTGC
* * * * ** * * *
10689 AACACTAAATCATCAATGTCGTGTATGCTAACAAAGGCAATGTGTTTTGCTTTCCAAATCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTG-GTGCCTAATCTTGAA
* * * * * * *** * *
10754 AAGATTGGAGACT-GT-TACGAG-AATCGATGCTTGTCTTATTCAAG-GGTGGACTTTCATGTTA
64 AAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA
* * * **
10815 AGGAAAATA-GGGCAAAGGAAAGATTTCCAAG-
126 A--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
* * * * * * * *
10846 AAACAAAAAATCATCAATGTCATTTATCCTAACG-AGGAGAATATGTTTATAGTGCCTAAT-TAC
1 AAAC--CAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCT-T
* * * * * * *
10909 AAAAAGAATGAAGGTCATT--TCT-AGAATCCATGTTTGTCTCATTT-A-AGGCAAGCACTTAGA
61 GAAAAGAATG--GG-GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAA--ACTTTGA
* * * * *
10969 CTTTCGAAAAATTA-GTGGAAAG-AAAGCCTTTGTAGC
121 -TTT-TAAAAA-AACG-GGAAAGAAAAGCTTTTCTTGC
* * * * *
11005 AAAACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGT-TTATGGTGCCTAATGC-TG
1 -AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAAT-CTTG
*
11068 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAT
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
* * *
11133 CAAAAATGGCGAGAAGAAAAGCTTTTCTTAC
126 AAAAAACGG-GA-AAGAAAAGCTTTTCTTGC
* * * *
11164 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTCGCTACCTAATCTTG-A
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTT-GGTGCCTAATCTTGAA
* * * * * * * *
11228 AAGTAATGGAGACT-GTTATGAG-AATCAAAGCTTATCTT-TTTAA-AGGGAGAAACTTTGATTT
64 AAG-AATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGA-GG-CAAACTTTGATTT
* * **
11289 TAAGGAAAATA-GGGCAATGAAAAGATTTTCACGC
124 TAA--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * * * * ** ***
11323 AAAAGAAAATCATCAATATCAT-TCATTCTAAAGAGGAGCATATGT-TTATAGCACCTAATCACA
1 -AAACCAAAGCATCAATGTCATGT-ATCCTAATGAAG-GCA-ATGTGTTTTGGTGCCTAATCTTG
* *** * * * * * * * * * * * *
11386 AAAAGAGTGAATATCATTATTAGAATCCAAGTTTGTCTCATTT--CAGGCACGAACCTAGACTTT
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
** ** * * *
11449 ACAAAAAATTGGAGGGAACAAAGCCTTTATTGTG
125 A-AAAAAACGGGAAAG-A-AAAGCTTTTCTTG-C
* ** * * * *
11483 AAACCAAAGCATCAATATTGTGTATCCTAATGAGAAG-AATATGTTTATGGTGCCTAACCTTGGA
1 AAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGCAATGTGTTT-TGGTGCCTAATCTTGAA
* * *
11547 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTTTATCA
64 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-AA
* * *
11612 AAATCGATGGGAAGAAAAGCTTTTCTTGTG
128 AAAACG--GGAAAGAAAAGCTTTTCTTG-C
* * * * * * *
11642 ACACCAAAAGCATCAATGCCGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCATG-A
1 AAACC-AAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * ** *
11706 AAGTAATGGAGACTATTTTGAG-AATCGATACTTGTCTTATTCAAG-GG-ATGAACTTTGATTTT
64 AAG-AATGGGGATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
* * * *
11768 AAGGATAATA-GGGCAAAAAAAAGATTTTCATGC
125 AA--A-AAAACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * * * * * ***
11801 AAAAAAAAATCATTAATGTTATTTATCCTAATGCAGAG-AATGTTTTTATAGTGCCTTATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GCAATGTGTTT-TGGTGCCTAATCTTGA
** * * * * * * * *
11865 AAAGAATGAAGA-TCGT-TGCTAGAATCCATGTTTATCTCA-TT-GGAGGCACAAACTTAGACTT
63 AAAGAATGGGGATTAGTGTG--AGTATTCATGTTTGTCTTATTTAAGAGG--CAAACTTTGATTT
* * *
11926 TACAAAAATTGATGGG-AAG-AAAGCCTTTGTTGC
124 TA-AAAAA---ACGGGAAAGAAAAGCTTTTCTTGC
* * * * * * * * **
11959 GAAACCAATGCATTAATATCCTCTATCCTAGT-AAGGATAATGTGTTTGTAGTGCCTAATC-ACA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
* * * * * ** * * * *
12022 AAATGAA-GGAAGATCATTAGT-AGAATCCATGTTTGTCACAGTT--GGGGCACGAACTTAGACT
63 AAA-GAATGG-GGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATT
** * * **
12083 TTACAAAAATTGGTGGGAA-AAATGAGTTTCTTGC
123 TTA-AAAAA-ACG-GGAAAGAAAAGCTTTTCTTGC
** * * * * * * *
12117 GAAACCAAAATATCAATATCATCTATCCTAATGAGAAG-ACT-TCATTTATGGTGCCTAATCCTA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGCAATGT-GTTT-TGGTGCCTAATCTTG
* * *
12180 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGAA-AGACAAGCTTTGATTCTA
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTT-AAGAGGCAAACTTTGATT-T-
** *
12244 TAAAAAACAATGGAAAGAAAAGCTTTTCTTGTG
124 TAAAAAA-ACGGGAAAGAAAAGCTTTTCTTG-C
* * * * *
12277 ACACTAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
1 AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAAA
* * * * * * *
12342 AGATTGGAGACT-GTTATGAG-AATCGATGTTTGTCTTATTCAAG-GG-ATGAACTTTGATTTAA
65 AGAATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT-T
* * * * * *
12403 AGAAAAATATGGCACAGAAAAGATTTCCATGC
125 A-AAAAA-ACGGGAAAGAAAAGCTTTTCTTGC
** * * * * * ** * **
12435 AAAAGAAAATG-GTCAATATCATTTATCCTAGTG-AGGAGAATGTGTTTATTATGCCTGATC-AC
1 -AAACCAAA-GCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTG
*** * * * * * * * * ** *
12497 AAAATGAATAAAGATCATTATTG-GAATCCAAGTTTGTCTCAATT--GAGGCACGAACTTACACT
62 AAAA-GAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATT
* * * *
12559 TT-ACAAAACTTGGCGAGAAG-AAAGCCTTTGTTGTG
123 TTAAAAAAAC--GG-GA-AAGAAAAGCTTTTCTTG-C
* * * * * * * *
12594 AAACCAACGCATCAATTATCGTGTA-CCTAATGAGAAGACTATGT-TTATGGTGCCTAATCCTAA
1 AAACCAAAGCATCAA-TGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAATCTTGA
* * * * * * * *
12657 AAAGAATGGGGATTTGTTTGAGCATTCAAGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATC
63 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-A
* ** *
12722 AAAAATGTCACAAAGAAAAGGTTTTCTTGC
127 AAAAACG--GGAAAGAAAAGCTTTTCTTGC
* * * * * ** * *
12752 AACTCCAACGCATCAATGTCTTGTGTCCTAACGAAGGCAAAATGTTTTGGCTTCCCAATCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * * *
12817 AAGAATGGAGACT-GT-TACGAG-AATCGATGCTTGTCTT-GTTAAG-GG-ATGAGCTTTGTTTT
64 AAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT
* ** * **
12876 TAAGGATAATA-GCACAAAGAAAAGATTTTCAAGC
124 TAA--A-AAAACG-GGAAAGAAAAGCTTTTCTTGC
** * * * * * **
12910 AAAAGAAAATCATCAATGTCATTTATCCTAAAG-AGGAGAATGTGTTTATTGTGCCTAATC-CCA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
*** * * * * * * * * ** * *
12973 AAATGAATAAAGATCATTACT-AGAATGCATGTCTGTGTCATTT--GAGGCAAGAAAATAGACTT
63 AAA-GAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGC-A-AACTTTGATTT
** * *
13035 TACAAAAATTGGTGGCAAGAAAA-CTTTTCTTCC
124 TA-AAAAA-ACG-GGAAAGAAAAGCTTTTCTTGC
* * * * * * * * *
13068 AAAACCAAAGCATCAATATTATGTATCGTAATGAGAAGACTATGT-TTATGGTGACTAATCCTAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAATCTTGA
* *
13132 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATA
63 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-A
*** * * *
13197 AAATTGGGTGAAAAGAAAATCTTTTCCTAC
127 AAAAACGG-G-AAAGAAAAGCTTTTCTTGC
* ** * *
13227 AACACCAAAGCATCAATGTGATGTATCCTAATGAAGGGTATGTGTTTTTGGTTCCCAATCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTG-TTTTGGTGCCTAATCTTGAA
* * ** ** * ** * * *
13292 AGGAATAGATACAATTACGAG-AATCGATGCTTGTCTTATTTAA-AGG-ATGAATTTTGATTTTA
64 AAGAATGGGGATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTTA
* * * * * * **
13354 AGGAAAATCTAGCAAAGAAACGATATTCACGC
126 A--AAAAAC-GGGAAAGAAAAGCTTTTCTTGC
** * * * * * ***
13386 TAAAGAAAATCATCAATATCATTTATCCTAATGAA-GAAGATGTGTTTATAGTGCCTAATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCA-ATGTGTTT-TGGTGCCTAATCTTGA
* ** * * * * * * ** ** * * * *
13450 AAAGAACGAAGATCATTACT-AGAATCCATGTTTGTCTTATATGTGACACGAACATAGACTTTAC
63 AAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
** * * ** *
13514 AAAAATTTGTGGGAAG-AAAGCCTTAATTGTG
126 AAAAA-ACG-GGAAAGAAAAGCTTTTCTTG-C
* * * * * * * * * *
13545 AAATCAAGGCATCAATATCCTGTATCCTAATGAGAAGACTATAT-TTATGGTGCCTAATCCTAAA
1 AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAATCTTGAA
* * *
13609 AAGAAT-AGGATTAGTGTGAGTATTCATGTTTGTATT-TTCTAAGAGACAAACTTTGATTCTATT
64 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATT-TAAGAGGCAAACTTTGA-T-T-TT
** *
13672 AAAAACGGCGGGAAA-AAAAGCATTTCTTGC
125 AAAAA-AACGGGAAAGAAAAGCTTTTCTTGC
* * * * * * * * * *
13702 GACACCAAAGCACCAATGTCATGCATCCCAAAGAAGCCAATGTGTTTTGGCTACCCAGTCATGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
** * * * * *
13767 AAGAATGAAGACT-GCTATGAG-AATCGATGCTTGTCTTATTCAAG-GG-ATGAACTTT-ATTGT
64 AAGAATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATT-T
* * *
13827 TAAGGAAAATA-GGGCAAAGAATAG-ATTTCTAAGC
124 TAA--AAAA-ACGGG-AAAGAAAAGCTTTTCT-TGC
* * * * * * ***
13861 AAAACAAAATCATCAATGTCATTTATCTTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
** * * *** * * * ** ** * * * *
13925 AAAGAATGAAGATCATTACCAGAATCCA-GCTTTGTCTCATTTGTGACACGAACATAGACTTTAC
63 AAAGAATGGGGATTAGTGTGAGTATTCATG-TTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
** * * * *
13989 AAAAATTGGTGGGAAG-AAAGCCTTTGTTGTG
126 AAAAA-ACG-GGAAAGAAAAGCTTTTCTTG-C
* * * * * * *
14020 AAACCGAAGCATCAATATCGTGTATCCTAATAAGAAGGCTATGT-TTATGGTGCCTAAACCTGAA
1 AAACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAATCTTGAA
* * * * * *
14084 AAGAGTAGGGATTAGTGTGAGTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTCTATCA
64 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-AA
* * *
14149 AGAACGGCAAGAAGAAAATCTTTTCTTGC
128 AAAACGG-GA-AAGAAAAGCTTTTCTTGC
* * * * * ** * *
14178 GACACCAAAGCATCAATGTCGTGTGTTCAAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
** * * * * * * * * *
14243 AAGAATGAAGACTATTATGAG-AATCGATGCTTGTCTTATTCAAG-GGATAAACTTTCATGTTAA
64 AAGAATGGGGATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAGG-CAAACTTTGATTTTAA
* * **
14306 GGAAAATA-GGGCAAAGAAAAGATTTCCAAGC
127 --AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
* * * * * **
14337 AAAACAAAATCATCAATGTCATTTATCCTAATGAAGAG-AATATGTTTATAGTGCCTAAT-TACA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GCAATGTGTTT-TGGTGCCTAATCT-TG
** * * * * * * * * *
14400 AAAAGAATGAAGATCATTACT-AGAATCCGTGTTTGTCTCATTT--GAGGCACGAACTTAGACTT
62 AAAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT
** * * *
14462 TACAAAAATTTGTGGGAAG-AAAGC-CTTCGTTGTG
124 TA-AAAAA-ACG-GGAAAGAAAAGCTTTTC-TTG-C
* * * * * * * * * * * * *
14496 AAACCAAAGCATCAATATCGTGGATACTAAGGAGAAGACTATGT-TTATAGAGCCAAATCCTAAA
1 AAACCAAAGCATCAATGTCATGTATCCTAA--TGAAGGCAATGTGTTTTGGTGCCTAATCTTGAA
*
14560 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCA
64 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-T-TAA
** *
14625 AAAATGGTGGGAAGAAAAGCTTTTCTTGC
127 AAAAACG-GGAAAGAAAAGCTTTTCTTGC
* * * * *
14654 GACACCAAATCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTGGCTTCC-AATCTTGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * * *** *
14718 AAGAATGGAGACT-GTTGTGAG-AATCGAGGCTTGTTTTATTTAAGAGATGAACTTTGATTTGAA
64 AAGAATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTAA
* * * *
14781 GATAAATA-GGGAAAAGAAATGATTTCCATGC
127 -A-AAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** * * ** * * **
14812 AAAAGAAAATCATCAATGTCATTTATCCTAATG-AGAAAGATGTGTTTATAGTGCTTAATC-ACA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCA-ATGTGTTT-TGGTGCCTAATCTTGA
** * * * * ** * * ** ** * * *
14875 AAAGAATGAAGATCATTACT-AGAAACCATGTTTCTCTCATTTGTGACACAAACATAGACTTTAC
63 AAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
** * * *
14939 AAAAATTGGTGGGAAGAAAA-CTTTTGTTGAA
126 AAAAA-ACG-GGAAAGAAAAGCTTTTCTTG-C
* * * * * * * * *
14970 AAACCAAAGCACCAATATCGTGTATCCAAATGAAAAGACTATGT-TTATGGTGACTAATCCTGAA
1 AAACCAAAGCATCAATGTCATGTATCCTAATG--AAGGCAATGTGTTTTGGTGCCTAATCTTGAA
* * *
15034 AAGAATGGGGATTAGTGTGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAA
64 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-AA
***
15099 AATTGGGTGAAAAGAAAAGCTTTTCTTGC
128 AAAACGG-G-AAAGAAAAGCTTTTCTTGC
* * * * * * * * *
15128 GACACCAAAGCGTCAATGTCATATATGCTAACGAAGGGAATATGTTTTGGCTTCCCAATCTTGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
** * * * * * * * *
15193 TGGAATGGAGACTGGTATGAGAAATCGATGCTTATCTTATTTAAG-GG-ATGAACTTTGATTTTA
64 AAGAATGGGGATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTTA
* ** * * * *
15256 AGGATAATTGGGTAAAGAATAGATTTCCATGC
126 A--AAAAACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * *
15288 AAAAGAAAATCATCAATGTCA-GTTATCCTAAT-ACAGAG-AAAGTGTTTATAGTGCCTTATC-A
1 -AAACCAAAGCATCAATGTCATG-TATCCTAATGA-AG-GCAATGTGTTT-TGGTGCCTAATCTT
** * *** * ** * *
15349 GAAAAAGAATGAAG-TTCATTACAAG-AATCTATGTTTGTCACA-TT-CGAGGCACGAACTTAGA
61 G-AAAAGAATGGGGATT-AGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGA
* * * *
15410 TATTACAAAAATTGATGGG-AAG-AAAGCCTTTGTTGC
121 TTTTA-AAAAA---ACGGGAAAGAAAAGCTTTTCTTGC
** * ** * * * * *
15446 GAAACCAAAATATCAATATTGTGTATCCTAATGAGAAG-ACT-TCATTTATGGTACCTAATCCTG
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGCAATGT-GTTT-TGGTGCCTAATCTTG
*
15509 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-T-T
** * *
15574 CAAAAATGGCAGGAAA-AAAAGCTTTCCTTG-
125 -AAAAA-AACGGGAAAGAAAAGCTTTTCTTGC
* * ** * * *
15604 AGACACCAAAGCAACAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAACCTTGA
1 A-A-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGA
** * * * * * * *
15669 AAAGAAT-TAGACT-GTTATGAGGA-TCGATGCTTGTCTTATTCAA-CGG-ATGAACTTTCATGT
63 AAAGAATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGAT-T
* * * * * *
15729 TAAGAAAAATAAGGCAAAGAAAAGATTTCCATGC
123 TTA-AAAAA-ACGGGAAAGAAAAGCTTTTCTTGC
** * * * ** ***
15763 AAAAAGAAATCATCAATGTCATTTATCCTAATG-AGGAGAATGTGTTTACAGTGCCTAATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
*** * * * * * * * * *
15827 AAAGAATAAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT--GAGGCACGAACTTAGACTTT
63 AAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
* * * *
15889 AAAAAAATTGGTGGGAAG-AAAGCCTTTGTTGC
125 AAAAAAA--CG-GGAAAGAAAAGCTTTTCTTGC
* * * * *
15921 AAAGCCAAAGCATCAATATCATGTATCCGAATGAGAAGACTATGT-TTATGGTGCCTAATCCTT-
1 AAA-CCAAAGCATCAATGTCATGTATCCTAAT--GAAGGCAATGTGTTTTGGTGCCTAAT-CTTG
* * * * * * * *
15984 AAGCA-AATGGGGATTATTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTCTGAATCTA
62 AA-AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA
*
16048 ACAAAAACAGCGGGAAGAAAAGCTTTT-TTGC
126 A-AAAAAC-G-GGAAAGAAAAGCTTTTCTTGC
* * * * * * * *
16079 AACACCAAAGCATCAATGTCGTGTATCTTAACGAAGGCAATGGGTTTTCGCTTCCCAATCATGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTT-GGTGCCTAATCTTGAA
* * * * * ** * **
16144 AAGAATAGAGACT-GT-TACGAG-AATCGTTGCCTGTCTTATTT-A-AGG-AATGAGCTTTCACG
64 AAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGGCAA--A-CTTTGATT
* **
16203 TTAAGGAAAATA-GGGCAAAGAAAAGATTTTCAAGC
123 TTAA--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * * * ***
16238 AAGAAAAAATCACCAATGTCATTTATCC-AGATGAGAAG-ATTGTGTTTGTAGTGCCTAATCACA
1 AA-ACCAAAGCATCAATGTCATGTATCCTA-ATGA-AGGCAATGTGTTT-TGGTGCCTAATCTTG
* ** * * * * * * * * * *
16301 AAAATAATGAAGATCACTACT-AGAATCCAAGTTTATCTCATTT-A-AGGCACGAACTTAGACTT
62 AAAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT
** * *
16363 TACAAAAATTGGTTGGAAG-AAAGCTTTTGTTGC
124 TA-AAAAAACGG--GAAAGAAAAGCTTTTCTTGC
* * ** * * *
16396 AAAACCAAAGCATCAATATCATGTACCCTAA-GAAGAAAACTATGTTTATAGTGCCTAATCCTGA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAA-TGTGTTT-TGGTGCCTAATCTTGA
*** * * * *
16460 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGATATAAAATCTGATTCTATC
63 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-A
*
16525 AAAAACTGTGGGAAGAAAAGCTTTTCTTGC
127 AAAAAC-G-GGAAAGAAAAGCTTTTCTTGC
* ** * * * *
16555 GACACCAAAGCATCAATGTCATGTATCCTAACAAAGGGAATGTGTTTCGGCTTCCCAATCTTGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * * * *
16620 AGGAATGGAGACTA-TGACGAG-AATCGATGCTTGTCTTATTCAAG-GG-ATGAACTTTGATCTT
64 AAGAATGGGGATTAGTG-TGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
* * ** * **
16681 AAGGATAACTGGGTAAAGAAAATATTTCCAAGC
125 AA-AAAAAC-GGG-AAAGAAAAGCTTTTCTTGC
** * * * ** * * * ***
16714 GAAAGAAAATCATCAATGTCATTTATCCTATTCCAGAG-AATCTGTTTATAGTGCCTTATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GCAATGTGTTT-TGGTGCCTAATCTTGA
** * * * * * * * **
16778 AAAGAATGAAGATCA-TTTCTAGAATCCATGTTTGTCTCATTT--GAGGCACGAACTTAGACCTT
63 AAAGAATGGGGATTAGTGT-GAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTT
* * * *
16840 AAAAAAATTGGTGGGAAG-AAAGCCTTTGTTGC
125 AAAAAAA--CG-GGAAAGAAAAGCTTTTCTTGC
* * * * * * * * * ***
16872 GAAACCAAAGCATCAATATCGTATATCATAATG-CGGAGAATGTGTTTATAGCGCCTTATCACAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
** * * * * * * * * *
16936 AAAGAATGAAGATCATTGCT-AGAATTCGTGTTTGTTGCATT-TTCAAG-GTACGAACTTAGACT
63 AAAGAATGGGGATTAGTG-TGAGTATTCATGTTTG-T-C-TTATTTAAGAG-GCAAACTTTGATT
* *
16998 TTACAAAAATTGATGGG--AGAAATA-CCTTTCTTGC
123 TTA-AAAAA---ACGGGAAAGAAA-AGCTTTTCTTGC
** * * * * ** * * *
17032 GAAACCAAAAAATCAATATCGTGCATCCTAATGACAAG-ACCGCGTTTATGGTGCCTATTCCTGA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGCAATGTGTTT-TGGTGCCTAATCTTGA
* * * * *
17096 GAATAA-GAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
63 AAAGAATG-GGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
17160 AAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
126 AAAAAAC-G-GGAAAGAAAAGCTTTTCTTGC
* * * * * *
17191 GACACCAAGGCGTCAATGTCATGTATCCTAATGAAGGCTATGTGTTTTGGCTTCCCAATCTTGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * * * **
17256 AAGAATGGAGACTGTTACTG-GA--ATTGATGCTTGTCTTATTCAAG-GG-ATGAACTTCAATTT
64 AAGAATGGGGA---TTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT
* *
17316 TAAGGATAATA-GGGCAAAGAAAAG-ATTTC---C
124 TAA--A-AAAACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * ** ***
17346 AAAAGAAAATCATCAATGTCATTTATCCTAATG-AGG-AGTGTGCTTATGGTGCCTTTTCACAAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTG-TTTTGGTGCCTAATCTTGAA
**** * * * * * * ** * ** *
17409 AAGAAAAAAGATCATTAAT-AGAATCCATGTTTGT-TTCATTTCAG-GAATAAACATAAACTTTA
64 AAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTT-ATTTAAGAG-GCAAACTTTGATTTTA
* * *
17471 CAAAAATTGATGGG-AAG-AAAGCCTTTGTTGC
126 -AAAAA---ACGGGAAAGAAAAGCTTTTCTTGC
* ** * *
17502 GAAACCAAAGCATAAAAATCATTTATCC-AATTGAAGAG-AATGTGTTTATGGTGCCTAATCCTG
1 -AAACCAAAGCATCAATGTCATGTATCCTAA-TGAAG-GCAATGTGTTT-TGGTGCCTAATCTTG
* **
17565 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGAT
62 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-
* * * * *
17630 CAAAAATGGCAAGAAAAAAGCTTTCCTTGC
126 AAAAAACGGGAA-AGAAAAGCTTTTCTTGC
* * * * * * *
17660 GACACCAAAGCATCAATGTCGTGTATCCTTACGAAGGCAATTTGTTTTGGCTTCCCAATCTTGAA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
** * * * * * *
17725 AAGAAT-TAGACT-GTTATGAGGA-TCGATGCTTGTCTTA-TTAA-ATGG-ATGAACTTTCATGT
64 AAGAATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGA-GGCA--AACTTTGATTT
* * *
17784 TAAGGAAAATA-GGGCAAAGAAAAGATTTCCATGC
124 TAA--AAAA-ACGGG-AAAGAAAAGCTTTTCTTGC
** * * * * ** **
17818 AAAAGGAAATCATCAATGTCATTTATCCTATTG-AGGAGAATGTGTTTACAGTGCCTAATC-ACA
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-CAATGTGTTT-TGGTGCCTAATCTTGA
* *** * * * * * * * *
17881 AAAAAAGTCAAGATCATTACT-AGAATCCATGTTTGTCTCATTT--GAGGCACGAACTTAGACTT
63 AAAGAA-TGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT
* * * *
17943 TAAAAAAATTGGTGGGAAG-AAAGCCTTTGTTGC
124 TAAAAAAA--CG-GGAAAGAAAAGCTTTTCTTGC
* * * * * * *
17976 AAAACCAAAGCATCAATATCATGTATTCGAATGAGTAGACTATGT-TTATGGTGCCCAATGC-T-
1 -AAACCAAAGCATCAATGTCATGTATCCTAATGA--AGGCAATGTGTTTTGGTGCCTAAT-CTTG
* * * * * * * * *
18038 AAAGAAAATGGGGATTATTATGAGTATTCATGTTTGTCTTAGTTAGGAGACAAACTCTGAATCTA
62 AAA-AGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA
18103 CCAAAAATA-GTAGG-AAGAAAAGCTTTTCTTGC
126 --AAAAA-ACG--GGAAAGAAAAGCTTTTCTTGC
* * * * * * * *
18135 AACACCAAAGTATCAATGTCCTGTCTCCTAATAAAGGCAATGGGTTTTGGCTTCCCAGTCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGG-TGCCTAATCTTGAA
* * * ** * *
18200 AA-AATGGAGACT-GT-TACGAG-AATCGAT-CCTGTCTTATTTAAG-GG-ATGAACTTTCACGT
64 AAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TT
* * * **
18258 TGAGGAAAAGA-GGGCAAAGAAAAGATTTTCAAGC
123 TTA--AAAAAACGGG-AAAGAAAAGCTTTTCTTGC
** ** * * * * ** ***
18292 AAAAGAAAATTATCAATGTCGTTTATCC-AGATGAGATG-ATTGTGTTTGTAATGCCTAATCACA
1 -AAACCAAAGCATCAATGTCATGTATCCTA-ATGA-AGGCAATGTGTTT-TGGTGCCTAATCTTG
* *** * * * * * * * *
18355 AAAATAATAAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT-A-AGGCACGAACTTTGACTT
62 AAAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTT
** * *
18417 TACAAAAATTGGTGGGAAG-AAAGCTTTTATTGC
124 TA-AAAAA-ACG-GGAAAGAAAAGCTTTTCTTGC
* * * * * *
18450 GAAACCAAAGCATCAATATCATGTATCCTAAGGAGAAGACTATGT-TTATAGTGCCTAATCTTGA
1 -AAACCAAAGCATCAATGTCATGTATCCTAA--TGAAGGCAATGTGTTTTGGTGCCTAATCTTGA
* ** * * *
18514 AAAGAATGGGGATTACTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTCTGATTCTATC
63 AAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTA-A
*
18579 AAAAACAGTGGGAAGAAAAGCTTTTCTTGC
127 AAAAAC-G-GGAAAGAAAAGCTTTTCTTGC
* * * * * * * *
18609 AACACCAATGCATCAATGTCGTGCATCCTAACGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAA
1 AA-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTT-GGTGCCTAATCTTGAA
*
18674 AGGAATGG
64 AAGAATGG
18682 AGACTGTTAC
Statistics
Matches: 6879, Mismatches: 2257, Indels: 1503
0.65 0.21 0.14
Matches are distributed among these distances:
150 3 0.00
151 3 0.00
152 7 0.00
153 51 0.01
154 19 0.00
155 116 0.02
156 203 0.03
157 646 0.09
158 2647 0.38
159 2506 0.36
160 585 0.09
161 80 0.01
162 12 0.00
164 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (154 bp):
AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGGTGCCTAATCTTGAAAA
GAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTAAAAAA
ACGGGAAAGAAAAGCTTTTCTTGC
Found at i:9573 original size:475 final size:475
Alignment explanation
Indices: 8509--11988 Score: 4409
Period size: 475 Copynumber: 7.3 Consensus size: 475
8499 TCACCCCAAA
* ** *
8509 GAGGAGAATGTGTTTATAGCACCTAATCACAAAAAGAGCGACA-ATCATTACTAGAATCCAAGTT
1 GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGA-AGATCATTACTAGAATCCATGTT
* * * * * *
8573 TGACTTATTTGAGGCACGAACCTAGACTTTAAAAAAATTTATGGGAAGAAAGCCTTTGTTGTGAA
65 TGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAA-TTGTGGGAAGAAAGCCTTTGTAGCGAA
* *
8638 ACCAAAGCATCAATATCGTGTT-TCCTAATGAGAAGACTATTTTTATGGTGCCTAACCCTGAAAA
129 ACCAAAGCATCAATATCGT-TTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * *
8702 TAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACCTTGATTTTATAAAA
193 GAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAA
* * *
8767 AACGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGC
258 AACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGC
*
8832 AATGTGTTTTGGCTTCCAAATCTTG-AAATAATTGGAGACTGTTACGAGAATCGATGCTTGTCCT
323 AATGTGTTTTGGCTTCCAAATCTTGAAAATAA-TGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * *
8896 ATTTAAGGG-TGGACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
387 ATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAA
* *
8960 GTCATCAATGTCATTTATCCTTAT
452 ATCATCAATGTCATTTATCCTAAT
* *
8984 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCAGTACTAGAATCCATGTTT
1 GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* ** *
9049 GTCTTATTTGAGGCACGAACTTAGACTTTTGAAAAATTGGAGGGAAGAAAGCCTTTGTAGCGAAA
66 GTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATT-GTGGGAAGAAAGCCTTTGTAGCGAAA
* *
9114 CCAAAGCATCAATATCATTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGA
130 CCAAAGCATCAATATCGTTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
*
9179 ATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
195 ATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAA
** * * * * * * **
9244 CGGCGGAAAGAAAAGCTTTTCTTTCGACACTACAGCATCAATGTCATATTTCCTAGTGAAGGCAA
260 CGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAA
* * * * * ** * *
9309 TGTATTTTGGCTTCCCAATCTGGAAAAAAAGGGAGACCATTACAAGCATCGATGCTTGTCTTATT
325 TGTGTTTTGGCTTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATT
*
9374 CAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATC
390 CAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATC
9439 ATCAATGTCATTTATCCTAAT
455 ATCAATGTCATTTATCCTAAT
*
9460 TAGGAGAATGTGTTTATTA-TACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTT
1 GAGGAGAATGTGTTTA-TAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTT
* * * * * * *
9524 AGTCTCATTTAAGACACGATCTTAGACTTTAAAAAAATTGTGAGAAGAAAGCCTTTATTGCGAAA
65 TGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGTGGGAAGAAAGCCTTTGTAGCGAAA
* * *
9589 CGAAAGCATCAATATCGTGTT-TCCTAATGAGAAGACTATTTTTATGGTGCCTAACCCTGAAAAG
130 CCAAAGCATCAATATCGT-TTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
9653 AATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAA
194 AATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAA
*
9718 ACGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCA
259 ACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCA
* * * * * *
9783 ATGTGTTTTGGCTTCCAAATCTTGAAAAGATTGGAGACTGTTACGAGAATTGATGCATGTATTTT
324 ATGTGTTTTGGCTTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTAT
* *
9848 TCAAGGGTTG-ACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACAAAAGAAAAT
389 TCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAT
*
9912 TATCAATGTCATTTATCCTAAT
454 CATCAATGTCATTTATCCTAAT
* * * * *
9934 AAAGAGAATGTGTCTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCACGTTT
1 GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* * *
9999 ATCTCATTTGAGGCACGAACTTAGACTTTAGAAAAATTGGTGGGAAGAAAACCTTTGTAGCGAAA
66 GTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATT-GTGGGAAGAAAGCCTTTGTAGCGAAA
* * * * *
10064 CCAAAGCATCCATATTGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGA
130 CCAAAGCATCAATATCGTTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * *
10129 A-AGGGACTAGTGTGAGTATTCATGTTTGTCTTATTTAAGA-G-AAACTTTAACTCTATCAAAAA
195 ATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAA
* * * *
10191 TGG-CGAGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAACGAAAGCA
260 CGGTAGA-AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCA
* * * * * * *
10255 ATGTGTTTTGGCTACCTAATCTTGAAAGTAATGGAGACTGTCACAAGAATCGATGTTTGTCTTTT
324 ATGTGTTTTGGCTTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTAT
* * * * * * *
10320 TTATGGGATAAACTTTAATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
389 TCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAT
* * *
10385 CATCAATATCATTCATCCTAAA
454 CATCAATGTCATTTATCCTAAT
** * ** * *
10407 GAGGAGAATGTGTTTATAACACCTAATCACAAATAGAGCGAAGATCTTTACTAGAATCCAAGTTT
1 GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* * *
10472 GTCTCACTTGAGGCATGAA-TCTAGACTTTAAAAAAATTTGTGGGAAGAAAGCCTTTATTA-CGA
66 GTCTCATTTGAGGCACGAACT-TAGACTTTAAAAAAA-TTGTGGGAAGAAAGCCTTT-GTAGCGA
* *
10535 AACCAAAGCATCAATATCGTGTT-TCCTAATGAGTAGACTATTTTTATGGTGCCT-ATGCCTG--
128 AACCAAAGCATCAATATCGT-TTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CCTGAA
* * * *
10596 -AGAATGGGGATTAGTGTGAGTGTTCATGTTTGTTTTATTTAAGAGGTAAACTTTGATTCTATAA
191 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCA
** * * * * *
10660 AAAATAGTAGAAAGAAAAGCTTTTCTTGCAACACTAAATCATCAATGTCGTGTATGCTAACAAAG
256 AAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAG
* *
10725 GCAATGTGTTTT-GCTTTCCAAATCTTGAAAAGATTGGAGACTGTTACGAGAATCGATGCTTGTC
321 GCAATGTGTTTTGGC-TTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * * *
10789 TTATTCAAGGG-TGGACTTTCATGTTAAGGAAAATAGGGCAAAGGAAAGATTTCCAAG-AAACAA
385 TTATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAA-AG
*
10852 AAAATCATCAATGTCATTTATCCTAAC
449 AAAATCATCAATGTCATTTATCCTAAT
* * * * *
10879 GAGGAGAATATGTTTATAGTGCCTAATTACAAAAAGAATGAAGGTCATTTCTAGAATCCATGTTT
1 GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* * * ** * *
10944 GTCTCATTTAAGGCAAGCACTTAGACTTTCGAAAAATTAGTGGAAAGAAAGCCTTTGTAGCAAAA
66 GTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATT-GTGGGAAGAAAGCCTTTGTAGCGAAA
* * *
11009 CCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGA
130 CCAAAGCATCAATATCGTTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
11074 ATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAA
195 ATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAA
* * * * * *
11139 TGG-CGAGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGTA
260 CGGTAGA-AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCA
* * * * * * * * *
11203 ATGTGTTTTCGCTACCTAATCTTGAAAGTAATGGAGACTGTTATGAGAATCAAAGCTTATCTTTT
324 ATGTGTTTTGGCTTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTAT
* * * *
11268 TAAAGGGA-GAAACTTTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCACGCAAAAGAAAA
389 TCAAGGGATG-AACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAA
* * * *
11332 TCATCAATATCATTCATTCTAAA
453 TCATCAATGTCATTTATCCTAAT
* * * * * * *
11355 GAGGAGCATATGTTTATAGCACCTAATCACAAAAAGAGTGAATATCATTATTAGAATCCAAGTTT
1 GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
11420 GTCTCATTTCAGGCACGAACCTAGACTTTACAAAAAATTGGAGGGAACAAAGCCTTTATTGTGAA
66 GTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAATT-GTGGGAAGAAAGCCTTTGTAGCGAA
* * * *
11485 ACCAAAGCATCAATATTGTGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAA-CCTTGGAAA
129 ACCAAAGCATCAATATCGTTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAA
* * *
11549 GAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTTTATCAAA
193 GAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAA
* * * * * *
11614 ATCGATGGGAAGAAAAGCTTTTCTTGTGACACCAAAAGCATCAATGCCGTGTATCCTAACGAAGG
258 AACGGTAGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCGTGTATCCTAACGAAGG
* * * * ** *
11679 CAATGTGTTTTGGCTTCCCAATCATGAAAGTAATGGAGACTATTTTGAGAATCGATACTTGTCTT
322 CAATGTGTTTTGGCTTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * * * *
11744 ATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAAAAAAGATTTTCATGCAAAAAAAA
387 ATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAA
* *
11809 ATCATTAATGTTATTTATCCTAAT
452 ATCATCAATGTCATTTATCCTAAT
* * * * *
11833 GCA-GAGAATGTTTTTATAGTGCCTTATCACAAAAAGAATGAAGATCGTTGCTAGAATCCATGTT
1 G-AGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTT
* * * * *
11897 TATCTCATTGGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAA
65 TGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTG-TGGGAAGAAAGCCTTTGTAGCGAA
* * * *
11962 ACCAATGCATTAATATCCTCTATCCTA
129 ACCAAAGCATCAATATCGTTTATCCTA
11989 GTAAGGATAA
Statistics
Matches: 2589, Mismatches: 373, Indels: 84
0.85 0.12 0.03
Matches are distributed among these distances:
470 4 0.00
471 45 0.02
472 354 0.14
473 353 0.14
474 214 0.08
475 846 0.33
476 317 0.12
477 221 0.09
478 233 0.09
479 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (475 bp):
GAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGTGGGAAGAAAGCCTTTGTAGCGAAAC
CAAAGCATCAATATCGTTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
TGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAC
GGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAAT
GTGTTTTGGCTTCCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTC
AAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCA
TCAATGTCATTTATCCTAAT
Found at i:12871 original size:634 final size:634
Alignment explanation
Indices: 11362--12662 Score: 1395
Period size: 634 Copynumber: 2.0 Consensus size: 634
11352 AAAGAGGAGC
** * * *
11362 ATATGTTTATAGCACCTAATCACAAAAAG-AGTGAATATCATTATTAGAATCCAAGTTTGTCTCA
1 ATATGTTTATAGTGCCTAATCACAAAAAGAAG-GAAGATCATTAGTAGAATCCAAGTTTGTCACA
* * * ** * ** * *
11426 TTTCAG-GCACGAACCTAGACTTTACAAAAAATTGG-AGGGAACAAAGCCTTTATTGTGAAACCA
65 GTT-AGAGCACAAACTTAGACTTTAC-AAAAATTGGTA-CAAAAAAAGAGTTTCTTGCGAAACCA
* ** * ** * **
11489 AAGCATCAATATTGTGTATCCTAATGAGAAGA-ATATGTTTATGGTGCCTAA-CCTTGGAAAGAA
127 AAACATCAATATCATCTATCCTAA-GAGAAGACA-AAATTTATGGTGCCCAATCC-TAAAAAGAA
* * ** * * * * * * *
11552 TGGGGATTAGTGTGAGTATTCATGTTTGTCTTA-TTAAAGAGACAAACTTTGATTTTATCAAAAT
189 TGGAGACTAGTACGAGTAATCATGCTTGTCTTAGTTGAA-AGACAAGCTTTGATTCTATAAAAAA
* *
11616 CGATGGGAAGAAAAGCTTTTCTTGTGACACCAAAAGCATCAATGCCGTGTATCCTAACGAAGGCA
253 CAATGGAAAGAAAAGCTTTTCTTGTGACACCAAAAGCATCAATGCCGTGTATCCTAACGAAGGCA
*
11681 ATGTGTTTTGGCTTCCCAATCATGAAAGTAATGGAGACTATTTTGAGAATCGATACTTGTCTTAT
318 ATGTGTTTTGGCTTCCCAATCATGAAAGTAATGGAGACTATTATGAGAATCGATACTTGTCTTAT
* * * *
11746 TCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAAAAAAGATTTTCATGCAAAAAAAAAT
383 TCAAGGGATGAACTTTGATTTAAAGAAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAAAAAAT
* * * * * *
11811 CATTAATGTTATTTATCCTAATGCAGAGAATGTTTTTATAGTGCCTTATCACAAAAAGAATGAAG
448 CATCAATATCATTTATCCTAATGCAGAGAATGTGTTTATAGTGCCTGATCACAAAAAGAATAAAG
* * * * * *
11876 ATCGTTGCTAGAATCCATGTTTATCTCATTGGAGGCACAAACTTAGACTTTACAAAAATTGATGG
513 ATCATTACTAGAATCCAAGTTTATCTCATTGGAGGCACAAACTTACACTTTACAAAAATTGACGA
* * * * *
11941 GAAGAAAGCCTTTGTTGCGAAACCAATGCATTAATATCCTCTATCCTAGTAAGGATA
578 GAAGAAAGCCTTTGTTGCGAAACCAACGCATCAATATCCTCTATCCTAATAAGAAGA
* * * *
11998 ATGTGTTTGTAGTGCCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCACAG
1 ATATGTTTATAGTGCCTAATCACAAAAAGAAGGAAGATCATTAGTAGAATCCAAGTTTGTCACAG
* * * *** * *
12063 TTGGGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAGTTTCTTGCGAAACCAAAAT
66 TTAGAGCACAAACTTAGACTTTACAAAAATTGGTACAAAAAAAGAGTTTCTTGCGAAACCAAAAC
*** * *
12128 ATCAATATCATCTATCCTAATGAGAAGACTTCATTTATGGTGCCTAATCCTAAAAAGAATGGGGA
131 ATCAATATCATCTATCCTAA-GAGAAGACAAAATTTATGGTGCCCAATCCTAAAAAGAATGGAGA
* * * * *
12193 TTAGTATGAGTATTCATGTTTGTCTTATTTGAAAGACAAGCTTTGATTCTATAAAAAACAATGGA
195 CTAGTACGAGTAATCATGCTTGTCTTAGTTGAAAGACAAGCTTTGATTCTATAAAAAACAATGGA
* * *
12258 AAGAAAAGCTTTTCTTGTGACA-CTAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTT
260 AAGAAAAGCTTTTCTTGTGACACCAAAAGCATCAATGCCGTGTATCCTAACGAAGGCAATGTGTT
* * * **
12322 TTGGCTTCCCAATCTTGAAAAG-ATTGGAGACTGTTATGAGAATCGATGTTTGTCTTATTCAAGG
325 TTGGCTTCCCAATCATG-AAAGTAATGGAGACTATTATGAGAATCGATACTTGTCTTATTCAAGG
* * * * **
12386 GATGAACTTTGATTTAAAGAAAAATATGGCACAGAAAAGATTTCCATGCAAAAGAAAATGGTCAA
389 GATGAACTTTGATTTAAAGAAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAAAAAATCATCAA
* *
12451 TATCATTTATCCTAGTG-AGGAGAATGTGTTTATTA-TGCCTGATCACAAAATGAATAAAGATCA
454 TATCATTTATCCTAATGCA-GAGAATGTGTTTA-TAGTGCCTGATCACAAAAAGAATAAAGATCA
* * * * * *
12514 TTATTGGAATCCAAGTTTGTCTCAATT-GAGGCACGAACTTACACTTTACAAAACTTGGCGAGAA
517 TTACTAGAATCCAAGTTTATCTC-ATTGGAGGCACAAACTTACACTTTACAAAAATTGACGAGAA
* * * *
12578 GAAAGCCTTTGTTGTGAAACCAACGCATCAATTATCGTGTA-CCTAATGAGAAGA
581 GAAAGCCTTTGTTGCGAAACCAACGCATCAA-TATCCTCTATCCTAATAAGAAGA
* *
12632 CTATGTTTATGGTGCCTAATC-CTAAAAAGAA
1 ATATGTTTATAGTGCCTAATCAC-AAAAAGAA
12663 TGGGGATTTG
Statistics
Matches: 562, Mismatches: 91, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
633 2 0.00
634 306 0.54
635 174 0.31
636 78 0.14
637 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (634 bp):
ATATGTTTATAGTGCCTAATCACAAAAAGAAGGAAGATCATTAGTAGAATCCAAGTTTGTCACAG
TTAGAGCACAAACTTAGACTTTACAAAAATTGGTACAAAAAAAGAGTTTCTTGCGAAACCAAAAC
ATCAATATCATCTATCCTAAGAGAAGACAAAATTTATGGTGCCCAATCCTAAAAAGAATGGAGAC
TAGTACGAGTAATCATGCTTGTCTTAGTTGAAAGACAAGCTTTGATTCTATAAAAAACAATGGAA
AGAAAAGCTTTTCTTGTGACACCAAAAGCATCAATGCCGTGTATCCTAACGAAGGCAATGTGTTT
TGGCTTCCCAATCATGAAAGTAATGGAGACTATTATGAGAATCGATACTTGTCTTATTCAAGGGA
TGAACTTTGATTTAAAGAAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAAAAAATCATCAATA
TCATTTATCCTAATGCAGAGAATGTGTTTATAGTGCCTGATCACAAAAAGAATAAAGATCATTAC
TAGAATCCAAGTTTATCTCATTGGAGGCACAAACTTACACTTTACAAAAATTGACGAGAAGAAAG
CCTTTGTTGCGAAACCAACGCATCAATATCCTCTATCCTAATAAGAAGA
Found at i:13128 original size:475 final size:476
Alignment explanation
Indices: 11982--16904 Score: 6004
Period size: 475 Copynumber: 10.4 Consensus size: 476
11972 TAATATCCTC
* * * * * * *
11982 TATCCTAGTAAGGATAATGTGTTTGTAGTGCCTAATCACAAAATGAAGGAAGATCATTAGTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * * **
12047 TCCATGTTTGTCACAGTTGGGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAATGAGTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GCCTT
* ** * * *
12111 TCTTGCGAAACCAAAATATCAATATCATCTATCCTAATGAGAAGACT-TCATTTATGGTGCCTAA
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT-GTTTATGGTGCCTAA
* *
12175 TCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGAA-AGACAAGCTTTGA
194 TCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGA
* ** * * * *
12239 TTCTATAAAAAACAAT-GGAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCGTGTATC
258 TTCTATCAAAAA-TGTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* *
12303 CTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGATTGGAGACTGTTATGAGAATCGA
322 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * * *
12368 TGTTTGTCTTATTCAAGGGATGAACTTTGATTTAAAGAAAAATATGGCACAGAAAAGATTTCCAT
387 TGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAA
** *
12433 GCAAAAGAAAATGGTCAATATCATT
452 GCAAAAGAAAATCATCAATGTCATT
* * * * * *
12458 TATCCTAGTGAGGAGAATGTGTTTATTA-TGCCTGATCACAAAATGAATAAAGATCATTATTGGA
1 TATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * * * *
12522 ATCCAAGTTTGTCTCAATTGAGGCACGAACTTACACTTTACAAAACTTGGCGAGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* *
12587 TGTTGTGAAACCAACGCATCAATTATCGTGTA-CCTAATGAGAAGACTATGTTTATGGTGCCTAA
130 TGTTGCGAAACCAAAGCATCAA-TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * * *
12651 TCCTAAAAAGAATGGGGATTTGTTTGAGCATTCAAGTTTTTCTTATTTAAGAGACAAACTTTGAT
194 TCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * *
12716 TCTATCAAAAATGTCACAAAGAAAAGGTTTTCTTGCAACTCCAACGCATCAATGTCTTGTGTCCT
259 TCTATCAAAAATGTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
** *
12781 AACGAAGGCAAAATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
324 AACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * * * ** *
12846 CTTGTCTTGTT-AAGGGATGAGCTTTGTTTTTAAGGATAATAGCACAAAGAAAAGATTTTCAAGC
389 CTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGC
12910 AAAAGAAAATCATCAATGTCATT
454 AAAAGAAAATCATCAATGTCATT
* * * * *
12933 TATCCTAAAGAGGAGAATGTGTTTATTGTGCCTAATCCCAAAATGAATAAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * ** * * *
12998 TGCATGTCTGTGTCATTTGAGGCAAGAAAATAGACTTTACAAAAATTGGTGGCAAGAAAACTTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * ** * *
13063 CTTCCAAAACCAAAGCATCAATATTATGTATCGTAATGAGAAGACTATGTTTATGGTGACTAATC
131 GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
13128 CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
196 CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * * *
13193 TAT-AAAATTGGGTGA-AAAGAAAATCTTTTCCTACAACACCAAAGCATCAATGTGATGTATCCT
261 TATCAAAAAT--GTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* ** * * * ** *
13256 AATGAAGGGTATGTGTTTTTGG-TTCCCAATCTTGAAAGGAATAGATACAATTACGAGAATCGAT
324 AACGAAGGCAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* * * *** * *
13320 GCTTGTCTTATTTAAAGGATGAATTTTGATTTTAAGGAAAATCTAGCAAAGAAACGATATT-CAC
388 GCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT-TTCCAA
* *
13384 GCTAAAGAAAATCATCAATATCATT
452 GCAAAAGAAAATCATCAATGTCATT
* *
13409 TATCCTAATGAAGA-AGATGTGTTTATAGTGCCTAATCACAAAAAGAACGAAGATCATTACTAGA
1 TATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * * * *
13473 ATCCATGTTTGTCTTATATGTGACACGAACATAGACTTTACAAAAATTTGTGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
** * * * * *
13538 AATTGTGAAATCAAGGCATCAATATCCTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAAT
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
13603 CCTAAAAAGAAT-AGGATTAGTGTGAGTATTCATGTTTGTATT-TTCTAAGAGACAAACTTTGAT
195 CCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATT-TAAGAGACAAACTTTGAT
* * * * * * *
13666 TCTATTAAAAACGGCGGGAAA-AAAAGCATTTCTTGCGACACCAAAGCACCAATGTCATGCATCC
259 TCTATCAAAAATGTC-AGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * * * *
13730 CAAAGAAGCCAATGTGTTTTGGCTACCCAGTCATGAAAAGAATGAAGACTGCTATGAGAATCGAT
323 TAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
13795 GCTTGTCTTATTCAAGGGATGAACTTT-ATTGTTAAGGAAAATAGGGCAAAGAATAGATTTCTAA
388 GCTTGTCTTATTCAAGGGATGAACTTTGATT-TTAAGGAAAATAGGGCAAAGAAAAGATTTCCAA
*
13859 GCAAAACAAAATCATCAATGTCATT
452 GCAAAAGAAAATCATCAATGTCATT
* *
13884 TATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACCAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * *
13949 TCCA-GCTTTGTCTCATTTGTGACACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
66 TCCATG-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * *
14013 TGTTGTGAAACCGAAGCATCAATATCGTGTATCCTAATAAGAAGGCTATGTTTATGGTGCCTAAA
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
14078 CCTGAAAAGAGTAGGGATTAGTGTGAGTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATT
195 CCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * * * *
14143 CTATCAAGAACGGCA-AGAAGAAAATCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTGTTCA
260 CTATCAAAAATGTCAGA-AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
14207 AACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAAGACTATTATGAGAATCGATG
324 AACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * *
14272 CTTGTCTTATTCAAGGGATAAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGC
389 CTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGC
*
14337 AAAACAAAATCATCAATGTCATT
454 AAAAGAAAATCATCAATGTCATT
* * *
14360 TATCCTAATGAAGAGAATATGTTTATAGTGCCTAATTACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * *
14425 TCCGTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAGAAAGCCTTC
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * * * * *
14490 GTTGTGAAACCAAAGCATCAATATCGTGGATACTAAGGAGAAGACTATGTTTATAGAGCCAAATC
131 GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
*
14555 CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTC
196 CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
14620 TATCAAAAATGGT-GGGAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCCA
261 TATCAAAAAT-GTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * *
14684 ATGAAGGGAATGTGTTTTGGCTT-CCAATCTTGAAAAGAATGGAGACTGTTGTGAGAATCGAGGC
325 ACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
* * * * * * *
14748 TTGTTTTATTTAAGAGATGAACTTTGATTTGAA-GATAAATAGGGAAAAGAAATGATTTCCATGC
390 TTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCAAGC
14812 AAAAGAAAATCATCAATGTCATT
454 AAAAGAAAATCATCAATGTCATT
* *
14835 TATCCTAATGA-GAAAGATGTGTTTATAGTGCTTAATCAC-AAAAGAATGAAGATCATTACTAGA
1 TATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * * * * * *
14898 AACCATGTTTCTCTCATTTGTGACACAAACATAGACTTTACAAAAATTGGTGGGAAGAAAACTTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
** * * * *
14963 TGTTGAAAAACCAAAGCACCAATATCGTGTATCCAAATGAAAAGACTATGTTTATGGTGACTAAT
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
15028 CCTGAAAAGAATGGGGATTAGTGTGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATT
195 CCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * *
15093 CTAT-AAAATTGGGTGA-AAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATGTCATATATGC
260 CTATCAAAAAT--GTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * ** *
15156 TAACGAAGGGAATATGTTTTGGCTTCCCAATCTTGAATGGAATGGAGACTGGTATGAGAAATCGA
323 TAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAG-AATCGA
* * * * * * *
15221 TGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGATAATTGGGTAAAGAATAGATTTCCAT
387 TGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAA
*
15286 GCAAAAGAAAATCATCAATGTCAGT
452 GCAAAAGAAAATCATCAATGTCATT
* * * * * *
15311 TATCCTAAT-ACAGAGAAAGTGTTTATAGTGCCTTATCAGAAAAAGAATGAAGTTCATTACAAGA
1 TATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * *
15375 ATCTATGTTTGTCACATTCGAGGCACGAACTTAGA-TATTACAAAAATTGATGGGAAGAAAGCCT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT-TTACAAAAATTGGTGGGAAGAAAGCCT
** * * *
15439 TTGTTGCGAAACCAAAATATCAATATTGTGTATCCTAATGAGAAGACT-TCATTTATGGTACCTA
129 TTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT-GTTTATGGTGCCTA
*
15503 ATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
193 ATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * *
15568 TTCTATCAAAAATGGCAGGAAA-AAAAGCTTTCCTTGAGACACCAAAGCAACAATGTCGTGTATC
258 TTCTATCAAAAATGTCA-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * *
15632 CTAACAAAGGCAATGTGTTTTGGCTTCCCAACCTTGAAAAGAAT-TAGACTGTTATGAGGATCGA
322 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * * *
15696 TGCTTGTCTTATTCAACGGATGAACTTTCATGTTAAGAAAAATAAGGCAAAGAAAAGATTTCCAT
387 TGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAA
15761 GCAAAA-AGAAATCATCAATGTCATT
452 GCAAAAGA-AAATCATCAATGTCATT
* *
15786 TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATAAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* *
15851 TCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* *
15916 GTTGC-AAAGCCAAAGCATCAATATCATGTATCCGAATGAGAAGACTATGTTTATGGTGCCTAAT
131 GTTGCGAAA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
** * * * * *
15980 CCTTAAGCA-AATGGGGATTATTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTCTGAA
195 CC-TAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * *
16044 TCTAACAAAAACAG-CGGGAAGAAAAGCTTTT-TTGCAACACCAAAGCATCAATGTCGTGTATCT
259 TCTATCAAAAA-TGTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
16107 TAACGAAGGCAATGGGTTTTCGCTTCCCAATCATGAAAAGAATAGAGACTGTTACGAGAATCGTT
323 TAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* * * * * ** *
16172 GCCTGTCTTATTTAAGGAATGAGCTTTCACGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAAG
388 GCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAG
*
16237 CAAGAA-AAAATCACCAATGTCATT
453 CAA-AAGAAAATCATCAATGTCATT
* * * * *
16261 TATCC-AGATGAGAAGATTGTGTTTGTAGTGCCTAATCACAAAAATAATGAAGATCACTACTAGA
1 TATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * * *
16325 ATCCAAGTTTATCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCTTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * *
16390 TGTTGCAAAACCAAAGCATCAATATCATGTACCCTAA-GAAGAAAACTATGTTTATAGTGCCTAA
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATG-AGAAGACTATGTTTATGGTGCCTAA
* * * * *
16454 TCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGATATAAAATCTGAT
194 TCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* *
16519 TCTATCAAAAACTGT-GGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
259 TCTATCAAAAA-TGTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * * *
16583 TAACAAAGGGAATGTGTTTCGGCTTCCCAATCTTGAAAGGAATGGAGACTATGACGAGAATCGAT
323 TAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* * * *
16648 GCTTGTCTTATTCAAGGGATGAACTTTGATCTTAAGGATAACT-GGGTAAAGAAAATATTTCCAA
388 GCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCAA
*
16712 GCGAAAGAAAATCATCAATGTCATT
452 GCAAAAGAAAATCATCAATGTCATT
* * * * *
16737 TATCCTATTCCA-GAGAATCTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTTCTAGA
1 TATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* *
16801 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTAAAAAAATTGGTGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* *
16866 TGTTGCGAAACCAAAGCATCAATATCGTATATCATAATG
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATG
16905 CGGAGAATGT
Statistics
Matches: 3815, Mismatches: 565, Indels: 133
0.85 0.13 0.03
Matches are distributed among these distances:
473 5 0.00
474 376 0.10
475 1589 0.42
476 1539 0.40
477 298 0.08
478 8 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (476 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATCAAAAATGTCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
TGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAA
AAGAAAATCATCAATGTCATT
Found at i:13502 original size:951 final size:952
Alignment explanation
Indices: 11982--16891 Score: 6060
Period size: 951 Copynumber: 5.2 Consensus size: 952
11972 TAATATCCTC
* * * * * * *
11982 TATCCTAGTAAGGATAATGTGTTTGTAGTGCCTAATCACAAAATGAAGGAAGATCATTAGTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * *
12047 TCCATGTTTGTCACAGTTGGGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAATGA-GT
66 TCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAA--ACCT
* * ** * *
12110 TTCTTGCGAAACCAAAATATCAATATCATCTATCCTAATGAGAAGACT-TCATTTATGGTGCCTA
129 TTGTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT-GTTTATGGTGCCTA
* *
12174 ATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGAA-AGACAAGCTTTG
193 ATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTG
* *** * * *
12238 ATTCTATAAAAAACAATGGAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCGTGTATC
257 ATTCTATAAAATAGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATC
* * *
12303 CTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGATTGGAGACTGTTATGAGAATCGA
322 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGA
* * * * * *
12368 TGTTTGTCTTATTCAAGGGATGAACTTTGATTTAAAGAAAAATATGGCACAGAAAAGATTTCCAT
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCAA
** * * * *
12433 GCAAAAGAAAATGGTCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATTA-TGCCTGATCAC
452 GCAAAAGAAAATCATCAATGTCATTTATCCTAATGAAGAGAATGTGTTTA-TAGTGCCTAATCAC
* * * * * *
12497 AAAATGAATAAAGATCATTATTGGAATCCAAGTTTGTCTCA-ATTGAGGCACGAACTTACACTTT
516 AAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATA-TGAGGCACGAACTTAGACTTT
* * * *
12561 ACAAAACTTGGCGAGAAGAAAGCCTTTGTTGTGAAACCAACGCATCAATTATCGTGTA-CCTAAT
580 ACAAAAATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAA-TATCGTGTATCCTAAT
* * * *
12625 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTTGTTTGAGCATTCAAGTTT
644 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTT
* ** * *
12690 TTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTCACAAAGAAAAGGTTTTCTTGCAAC
709 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTCGGAAAGAAAAGCTTTTCTTGCGAC
* * * * **
12755 TCCAACGCATCAATGTCTTGTGTCCTAACGAAGGCAAAATGTTTTGGCTTCCCAATCTTGAAAAG
774 ACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
* * * * *
12820 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTGTT-AAGGGATGAGCTTTGTTTTTAAGGATA
839 AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATGTTAAGGATA
** *
12884 ATAGCACAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATGTCATT
904 ATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATGTCATT
* * * * *
12933 TATCCTAAAGAGGAGAATGTGTTTATTGTGCCTAATCCCAAAATGAATAAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * *
12998 TGCATGTCTGTGTCATTTGAGGCAAGAAAATAGACTTTACAAAAATTGGTGGCAAGAAAACTTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAACCTTT
* * * * *
13063 CTTCCAAAACCAAAGCATCAATATTATGTATCGTAATGAGAAGACTATGTTTATGGTGACTAATC
131 GTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
13128 CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
196 CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
13193 TATAAAATTGGGTGAAAAGAAAATCTTTTCCTACAACACCAAAGCATCAATGT-GATGTATCCTA
261 TATAAAATAGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCG-TGTATCCTA
* ** * * ** *
13257 ATGAAGGGTATGTGTTTTTGG-TTCCCAATCTTGAAAGGAATAGATACAATTACGAGAATCGATG
325 ACGAAGGCAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGATG
* * * * * *
13321 CTTGTCTTATTTAAAGGATGAATTTTGATTTTAAGGAAAATCTAGCAAAGAAACGATATT-CACG
389 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGAT-TTCCAAG
* *
13385 CTAAAGAAAATCATCAATATCATTTATCCTAATGAAGA-AGATGTGTTTATAGTGCCTAATCACA
453 CAAAAGAAAATCATCAATGTCATTTATCCTAATGAAGAGA-ATGTGTTTATAGTGCCTAATCACA
* * * * *
13449 AAAAGAACGAAGATCATTACTAGAATCCATGTTTGTCTTATATGTGACACGAACATAGACTTTAC
517 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATATGAGGCACGAACTTAGACTTTAC
* ** * * *
13514 AAAAATTTGTGGGAAGAAAGCCTTAATTGTGAAATCAAGGCATCAATATCCTGTATCCTAATGAG
582 AAAAATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAG
* * *
13579 AAGACTATATTTATGGTGCCTAATCCTAAAAAGAAT-AGGATTAGTGTGAGTATTCATGTTTGTA
647 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTC
* * * *
13643 TT-TTCTAAGAGACAAACTTTGATTCTATTAAAAACGGCGGGAAA-AAAAGCATTTCTTGCGACA
712 TTATT-TAAGAGACAAACTTTGATTCTATCAAAAATGTC-GGAAAGAAAAGCTTTTCTTGCGACA
* * * * * * * *
13706 CCAAAGCACCAATGTCATGCATCCCAAAGAAGCCAATGTGTTTTGGCTACCCAGTCATGAAAAGA
775 CCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
* * *
13771 ATGAAGACTGCTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTT-ATTGTTAAGGAAA
840 ATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGA-TGTTAAGGATA
* * *
13835 ATAGGGCAAAGAATAGATTTCTAAGCAAAACAAAATCATCAATGTCATT
904 ATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATGTCATT
* *
13884 TATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACCAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * *
13949 TCCA-GCTTTGTCTCATTTGTGACACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
66 TCCATG-TTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAACCTT
** * * * * *
14013 TGTTGTGAAACCGAAGCATCAATATCGTGTATCCTAATAAGAAGGCTATGTTTATGGTGCCTAAA
130 TGTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
14078 CCTGAAAAGAGTAGGGATTAGTGTGAGTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATT
195 CCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
14143 CTATCAAGA-ACGG-CAAGAAGAAAATCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTGTTC
260 CTAT-AAAATAGGGTGAA-AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC
* * *
14206 AAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT-GAAGACTATTATGAGAATCGA
323 TAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAG-AGACTGTTATGAGAATCGA
* * * * *
14270 TGCTTGTCTTATTCAAGGGATAAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAA
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCAA
* * *
14335 GCAAAACAAAATCATCAATGTCATTTATCCTAATGAAGAGAATATGTTTATAGTGCCTAATTACA
452 GCAAAAGAAAATCATCAATGTCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACA
* *
14400 AAAAGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
517 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATATGAGGCACGAACTTAGACTTTAC
* * * * *
14465 AAAAATTTGTGGGAAGAAAGCCTTCGTTGTGAAACCAAAGCATCAATATCGTGGATACTAAGGAG
582 AAAAATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAG
* * *
14530 AAGACTATGTTTATAGAGCCAAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTC
647 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTC
* *
14595 TTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGT-GGGAAGAAAAGCTTTTCTTGCGACAC
712 TTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GTCGGAAAGAAAAGCTTTTCTTGCGACAC
* * * *
14659 CAAATCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTGGCTT-CCAATCTTGAAAAGAA
776 CAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * * * *
14723 TGGAGACTGTTGTGAGAATCGAGGCTTGTTTTATTTAAGAGATGAACTTTGAT-TTGAA-GATAA
841 TGGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATGTT-AAGGAT-A
* * *
14786 ATAGGGAAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATGTCATT
904 ATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATGTCATT
* *
14835 TATCCTAATGA-GAAAGATGTGTTTATAGTGCTTAATCAC-AAAAGAATGAAGATCATTACTAGA
1 TATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * * * *
14898 AACCATGTTTCTCTCATTTGTGACACAAACATAGACTTTACAAAAATTGGTGGGAAGAAAACTTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAACCTT
* * * * * *
14963 TGTTGAAAAACCAAAGCACCAATATCGTGTATCCAAATGAAAAGACTATGTTTATGGTGACTAAT
130 TGTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
15028 CCTGAAAAGAATGGGGATTAGTGTGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATT
195 CCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * *
15093 CTATAAAATTGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATGTCATATATGCTA
260 CTATAAAATAGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
* * ** * *
15158 ACGAAGGGAATATGTTTTGGCTTCCCAATCTTGAATGGAATGGAGACTGGTATGAGAAATCGATG
325 ACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAG-AATCGATG
* * * * *
15223 CTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGATAAT-TGGGTAAAGAATAGATTTCCATG
389 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAT-GGCAAAGAAAAGATTTCCAAG
* * * *
15287 CAAAAGAAAATCATCAATGTCAGTTATCCTAAT-ACAGAGAAAGTGTTTATAGTGCCTTATCAGA
453 CAAAAGAAAATCATCAATGTCATTTATCCTAATGA-AGAGAATGTGTTTATAGTGCCTAATCACA
* * * *
15351 AAAAGAATGAAGTTCATTACAAGAATCTATGTTTGTCACAT-TCGAGGCACGAACTTAGA-TATT
517 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATAT-GAGGCACGAACTTAGACT-TT
* * ** *
15414 ACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAATATCAATATTGTGTATCCTAATG
580 ACAAAAATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATG
* * *
15479 AGAAGACT-TCATTTATGGTACCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTT
645 AGAAGACTAT-GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTT
* * *
15543 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAA-AAAAGCTTTCCTTGAGA
709 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTC-GGAAAGAAAAGCTTTTCTTGCGA
* * * *
15607 CACCAAAGCAACAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAACCTTGAAAA
773 CACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAA
* * * * * *
15672 GAAT-TAGACTGTTATGAGGATCGATGCTTGTCTTATTCAACGGATGAACTTTCATGTTAAGAAA
838 GAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATGTTAAGGAT
* *
15736 AATAAGGCAAAGAAAAGATTTCCATGCAAAA-AGAAATCATCAATGTCATT
903 AATAGGGCAAAGAAAAGATTTCCAAGCAAAAGA-AAATCATCAATGTCATT
* *
15786 TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATAAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * * *
15851 TCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAACCTTT
* *
15916 GTTGCAAAGCCAAAGCATCAATATCATGTATCCGAATGAGAAGACTATGTTTATGGTGCCTAATC
131 GTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
** * * * * *
15981 CTTAAGCA-AATGGGGATTATTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTCTGAAT
196 C-TAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
16045 CTAACAAAAACAGCGG-G--AAGAAAAGCTTTT-TTGCAACACCAAAGCATCAATGTCGTGTATC
260 CT-A-TAAAATAG-GGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATC
* * * * * *
16106 TTAACGAAGGCAATGGGTTTTCGCTTCCCAATCATGAAAAGAATAGAGACTGTTACGAGAATCGT
322 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGA
* * * * ** * *
16171 TGCCTGTCTTATTTAAGGAATGAGCTTTCACGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAA
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCAA
* * *
16236 GCAAGAA-AAAATCACCAATGTCATTTATCC-AGATG-AGAAGATTGTGTTTGTAGTGCCTAATC
452 GCAA-AAGAAAATCATCAATGTCATTTATCCTA-ATGAAG-AGAATGTGTTTATAGTGCCTAATC
* * * * * *
16298 ACAAAAATAATGAAGATCACTACTAGAATCCAAGTTTATCTCATTTAAGGCACGAACTTAGACTT
514 ACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATATGAGGCACGAACTTAGACTT
* * ** * *
16363 TACAAAAATTGGTTGGAAGAAAGCTTTTGTTGCAAAACCAAAGCATCAATATCATGTACCCTAA-
579 TACAAAAATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCTAAT
* * *
16427 GAAGAAAACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTT
644 G-AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTT
* * * * *
16492 TGTCTTATTTAAGATATAAAATCTGATTCTATCAAAAACTGT-GGGAAGAAAAGCTTTTCTTGCG
708 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGTCGGAAAGAAAAGCTTTTCTTGCG
* * *
16556 ACACCAAAGCATCAATGTCATGTATCCTAACAAAGGGAATGTGTTTCGGCTTCCCAATCTTGAAA
772 ACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* * * * *
16621 GGAATGGAGACTATGACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATCTTAAGGA
837 AGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATGTTAAGGA
* * *
16686 TAACT-GGGTAAAGAAAATATTTCCAAGCGAAAGAAAATCATCAATGTCATT
902 TAA-TAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATGTCATT
* * * * *
16737 TATCCTATTCCA-GAGAATCTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTTCTAGA
1 TATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGA
* * * *
16801 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTAAAAAAATTGGTGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAACCTT
*
16866 TGTTGCGAAACCAAAGCATCAATATC
130 TGTTGCAAAACCAAAGCATCAATATC
16892 GTATATCATA
Statistics
Matches: 3402, Mismatches: 489, Indels: 136
0.84 0.12 0.03
Matches are distributed among these distances:
949 13 0.00
950 861 0.25
951 2147 0.63
952 366 0.11
953 7 0.00
954 6 0.00
955 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (952 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAGAAAACCTTT
GTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATAAAATAGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAA
CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCGATGCT
TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCAAGCAA
AAGAAAATCATCAATGTCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAAA
GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATATGAGGCACGAACTTAGACTTTACAAAA
ATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGA
CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTAT
TTAAGAGACAAACTTTGATTCTATCAAAAATGTCGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAG
ACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATGTTAAGGATAATAGGGC
AAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATGTCATT
Found at i:17986 original size:474 final size:472
Alignment explanation
Indices: 16895--18981 Score: 2431
Period size: 474 Copynumber: 4.4 Consensus size: 472
16885 CAATATCGTA
* * * * *
16895 TATCATAATGCGGAGAATGTGTTTATAGCGCCTTATCACAAAAAGAATGAAGATCATTGCTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATAAAGATCATTACTAGAA
* * * * *
16960 TTCGTGTTTGT-TGCATTTTCAAGGTACGAACTTAGACTTTACAAAAATTGATGGG-AGAAATAC
66 TCCATGTTTGTCT-CA-TTT-AAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GC
* ** * * * * *
17023 CTTTCTTGCGAAACCAAAAAATCAATATCGTGCATCCTAATGACAAGACCGCGTTTATGGTGCCT
127 CTTTGTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGA-GAGACTGTGTTTATGGTGCCT
* * * *
17088 ATTCCTGAGAATAA-GAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
190 AATCCTGAAAAGAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCT
* * * * * *
17152 GATTCTATAAAAAACGGTGGAA-AGAAAAGCTTTTCTTGCGACACCAAGGCGTCAATGTCATGTA
254 GATTCTATCAAAAA--GTGGAAGAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTA
* *
17216 TCCTAATGAAGGCTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACTG-GAAT
317 TCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAC-GAGAAT
* * *
17280 TGATGCTTGTCTTATTCAAGGGATGAAC-TTCAATTTTAAGGATAATAGGGCAAAGAAAAGATTT
381 CGATGCTTGTCTTATTCAAGGGATGAACTTTC-ATGTTAAGGAAAATAGGGCAAAGAAAAGATTT
17344 C---CAAAAGAAAATCATCAATGTCATT
445 CAAGCAAAAGAAAATCATCAATGTCATT
* * * * *
17369 TATCCTAATGAGGAG--TGTGCTTATGGTGCCTTTTCACAAAAAGAAAAAAGATCATTAATAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATAAAGATCATTACTAGAA
* * * ** * * *
17432 TCCATGTTTGTTTCATTTCAGGAATAAACATAAACTTTACAAAAATTGATGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * *
17497 GTTGCGAAACCAAAGCATAAAAATCATTTATCCAATTGAAGAGAATGTGTTTATGGTGCCTAATC
131 GTTGCGAAACCAAAGCATCAATATCATGTATCCAA-TG-AGAGACTGTGTTTATGGTGCCTAATC
* *
17562 CTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
194 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGATTC
* * * *
17627 GATCAAAAA-TGGCAAGAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTATCCTTA
259 TATCAAAAAGTGG-AAGAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAA
* * * *
17691 CGAAGGCAATTTGTTTTGGCTTCCCAATCTTGAAAAGAAT-TAGACTGTTATGAGGATCGATGCT
323 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * *
17755 TGTCTTATTAAATGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
388 TGTCTTATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTT-CAAGCAA
*
17820 AAGGAAATCATCAATGTCATT
452 AAGAAAATCATCAATGTCATT
* * * *
17841 TATCCTATTGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAA-AAGTCAAGATCATTACTAGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA-TAAAGATCATTACTAGA
* *
17905 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * *
17970 TGTTGCAAAACCAAAGCATCAATATCATGTATTCGAATGAGTAGACTATGTTTATGGTGCCCAAT
130 TGTTGCGAAACCAAAGCATCAATATCATGTA-TCCAATGAG-AGACTGTGTTTATGGTGCCTAAT
* * * * * *
18035 GCT-AAAGAAAATGGGGATTATTATGAGTATTCATGTTTGTCTTAGTTAGGAGACAAACTCTGAA
193 CCTGAAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAT
* * * *
18099 TCTACCAAAAATAGTAGGAAG--AAAAGCTTTTCTTGCAACACCAAAGTATCAATGTCCTGTCTC
257 TCTATC-AAAA-AGT-GGAAGAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATC
** * *
18162 CTAATAAAGGCAATGGGTTTTGGCTTCCCAGTCTTGAAAA-AATGGAGACTGTTACGAGAATCGA
319 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * * *
18226 T-CCTGTCTTATTTAAGGGATGAACTTTCACGTTGAGGAAAAGAGGGCAAAGAAAAGATTTTCAA
384 TGCTTGTCTTATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCAA
* *
18290 GCAAAAGAAAATTATCAATGTCGTT
448 GCAAAAGAAAATCATCAATGTCATT
* * * * *
18315 TATCC-AGATGA-GATGATTGTGTTTGTAATGCCTAATCACAAAAATAATAAAGATCATTACTAG
1 TATCCTA-ATGAGGA-GAATGTGTTTATAGTGCCTTATCACAAAAAGAATAAAGATCATTACTAG
* * *
18378 AATCCAAGTTTGTCTCATTTAAGGCACGAACTTTGACTTTACAAAAATTGGTGGGAAGAAAGCTT
64 AATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* * * *
18443 TTATTGCGAAACCAAAGCATCAATATCATGTATCCTAAGGAGAAGACTATGTTTATAGTGCCTAA
129 TTGTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAG-AGACTGTGTTTATGGTGCCTAA
* * * *
18508 TCTTGAAAAGAATGGGGATTACTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTCTGAT
192 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAT
* *
18573 TCTATCAAAAACAGTGG--GAAGAAAAGCTTTTCTTGCAACACCAATGCATCAATGTCGTGCATC
257 TCTATC-AAAA-AGTGGAAGAA-AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATC
* * *
18636 CTAACGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGA
319 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * * * * *
18701 TGGTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTGTCAA
384 TGCTTGTCTTATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATT-TCAA
* *
18766 GCGAAAGAAAATCATCAATGCCATT
448 GCAAAAGAAAATCATCAATGTCATT
* * * * *
18791 TATCCTAATGCGGAGAATTTGTTTATAGTGCCTTGTCCCAAAAAGAATGAAGATCAATT-CTAGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATAAAGATC-ATTACTAGA
* * * *
18855 ATCCATGTTTGTCTAATTTGAGGCACGAACTTAGACCTTACAAAAATTAGTGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * * * *
18920 TGTTGTGAAACGAAAGCATCAATATCGTGTATCATAATGTGAAGAATGTGTTTATAGTGCCT
130 TGTTGCGAAACCAAAGCATCAATATCATGTATC-CAATGAG-AGACTGTGTTTATGGTGCCT
18982 TATCACAAAA
Statistics
Matches: 1375, Mismatches: 198, Indels: 78
0.83 0.12 0.05
Matches are distributed among these distances:
467 4 0.00
468 69 0.05
469 85 0.06
470 148 0.11
471 11 0.01
472 88 0.06
473 15 0.01
474 586 0.43
475 132 0.10
476 225 0.16
477 10 0.01
478 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (472 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATAAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
GTTGCGAAACCAAAGCATCAATATCATGTATCCAATGAGAGACTGTGTTTATGGTGCCTAATCCT
GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCTA
TCAAAAAGTGGAAGAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAACGA
AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
CTTATTCAAGGGATGAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCAAGCAAAAGA
AAATCATCAATGTCATT
Found at i:19066 original size:158 final size:158
Alignment explanation
Indices: 18804--19115 Score: 400
Period size: 158 Copynumber: 2.0 Consensus size: 158
18794 CCTAATGCGG
* * * * * *
18804 AGAATTTGTTTATAGTGCCTTGTCCCAAAAAGAATGAAGATCAATTCTAGAATCCATGTTTGTCT
1 AGAATGTGTTTATAGTGCCTTATCACAAAAAGAAAGAAGATCAATTCTAGAATACATATTTGTCT
* * * * *
18869 AATTTGAGGCACGAACTTAGACCTTACAAAAATTAGTGGGAAGAAA-GCCTTTGTTGTGAAA-CG
66 AATTCGAGACACGAACTTAGACCTTACAAAAATTAGTGGG-AGAAATACCTTTCTTGCGAAATCG
18932 AAAGCATCAATATCGTGTATCATAATGTGA
130 AAA-CATCAATATCGTGTATCATAATGTGA
18962 AGAATGTGTTTATAGTGCCTTATCACAAAAAGAAAGAAGATC-ATTGCTAGAATACATATTTGTC
1 AGAATGTGTTTATAGTGCCTTATCACAAAAAGAAAGAAGATCAATT-CTAGAATACATATTTGTC
* *
19026 -ACATTCGAGATACGAACTTAGA-CTTCACAAAAATTGGTGGGAGAAATACCTTTCTTGCGAAAT
65 TA-ATTCGAGACACGAACTTAGACCTT-ACAAAAATTAGTGGGAGAAATACCTTTCTTGCGAAAT
* * *
19089 TGAAATATCAATATCGTGTATCCTAAT
128 CGAAACATCAATATCGTGTATCATAAT
19116 AACAAGACCT
Statistics
Matches: 133, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
157 12 0.09
158 117 0.88
159 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (158 bp):
AGAATGTGTTTATAGTGCCTTATCACAAAAAGAAAGAAGATCAATTCTAGAATACATATTTGTCT
AATTCGAGACACGAACTTAGACCTTACAAAAATTAGTGGGAGAAATACCTTTCTTGCGAAATCGA
AACATCAATATCGTGTATCATAATGTGA
Found at i:22115 original size:42 final size:42
Alignment explanation
Indices: 22056--22165 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
22046 AAGAGAAAGA
* *
22056 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGTTAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
22098 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
22140 AGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
22166 GAGTGAAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.40, C:0.02, G:0.47, T:0.11
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:22149 original size:18 final size:18
Alignment explanation
Indices: 22122--22168 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
22112 TGATAGGAGG
*
22122 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
22140 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
22158 AG-GAGGAGGAG
1 AGAGA-GAGGAG
22169 TGAAGAAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 2 0.08
18 23 0.92
ACGTcount: A:0.43, C:0.02, G:0.47, T:0.09
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:38466 original size:42 final size:42
Alignment explanation
Indices: 38411--38529 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
38401 TTCTTCTCTC
* *
38411 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCCGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCGTCT
* *
38453 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCGTCT
* *
38495 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
38530 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.47, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCGTCT
Found at i:38471 original size:24 final size:24
Alignment explanation
Indices: 38435--38513 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 24
38425 CCTCCTCTCT
* *
38435 CTATTATCTCTCCCGTCTCTCCTC
1 CTATCATCCCTCCCGTCTCTCCTC
* *
38459 CTATCATCCCT-CC-TATCT-CTA
1 CTATCATCCCTCCCGTCTCTCCTC
*
38480 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCCGTCTCTCCTC
38501 CTATCATCCCTCC
1 CTATCATCCCTCC
38514 TCTCTCTTCT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
18 2 0.05
19 1 0.02
20 5 0.12
21 14 0.33
22 5 0.12
23 2 0.05
24 13 0.31
ACGTcount: A:0.11, C:0.47, G:0.03, T:0.39
Consensus pattern (24 bp):
CTATCATCCCTCCCGTCTCTCCTC
Found at i:38514 original size:24 final size:24
Alignment explanation
Indices: 38435--38520 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
38425 CCTCCTCTCT
* * *
38435 CTATTATCTCTCCCGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
38459 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
38480 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
38501 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
38521 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.47, G:0.02, T:0.41
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:40331 original size:42 final size:42
Alignment explanation
Indices: 40276--40394 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
40266 TTCTTCTCTC
* *
40276 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
40318 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
40360 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
40395 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:40335 original size:12 final size:11
Alignment explanation
Indices: 40309--40384 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
40299 TCTATTATCT
*
40309 CTCCTGTCTCTC
1 CTCCTATCTC-C
40321 CTCCTATCATCC
1 CTCCTATC-TCC
40333 CTCCTATCT--
1 CTCCTATCTCC
*
40342 CTACTATCT--
1 CTCCTATCTCC
*
40351 CTCCTGTCTCTC
1 CTCCTATCTC-C
40363 CTCCTATCATCC
1 CTCCTATC-TCC
*
40375 CTCCTCTCTC
1 CTCCTATCTC
40385 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:40336 original size:24 final size:24
Alignment explanation
Indices: 40300--40385 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
40290 CCTCCTCTCT
* *
40300 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
40324 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
40345 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
40366 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
40386 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:40360 original size:18 final size:18
Alignment explanation
Indices: 40291--40361 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
40281 CCTGTCATCC
* *
40291 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
40309 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
40331 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
40351 CTCCTGTCTCT
1 CTCCTGTCTCT
40362 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:43190 original size:476 final size:475
Alignment explanation
Indices: 42083--43564 Score: 2005
Period size: 475 Copynumber: 3.1 Consensus size: 475
42073 GTTGTCATCA
*
42083 GAAACCAAAGCATCAATATCATGTATCTTAAGAAGAAGACTACGTTTATAGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCATGTATCTTAAGGAGAAGACTACGTTTATAGTGCCTAATCCTGAA
*
42148 AAGAATGGAGATTAGTGTGAGTATTCATGTTTGTCATATTTAAGAGATAAACTCTGATTCTATCA
66 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCATATTTAAGAGATAAACTCTGATTCTATCA
* *
42213 AAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTGTCATGTATCCTAACGAAG
131 AAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAG
** *
42278 GAAATGTGCGTTGGCTTCCCAATCTTGAAAAGAATTGAGACTGTTACGAGAATCGATGCTTGTCT
196 GAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACTGTTATGAGAATCGATGCTTGTCT
* *
42343 TATTTAGGGGATGAATTTTGATTTTAAGGATAATTGGGTAAAAAAAATATTTCCAGGCAAAAGAA
260 TATTTAGGGGATGAATTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTTTCAGGCAAAAGAA
*
42408 AATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTAT--CAGAAATGAAT
325 AATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCACAAAAAT-AAT
* * * *
42471 AAAGATCATTATTAGAATCCATA-TTTGCCTCATTTGAGGCACGAACATAGGCTTTACAAAAATT
389 GAAGATCATTATTAGAATCCA-AGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
42535 GGTGGGAAGAAAACCTTTATTGT
453 GGTGGGAAGAAAGCCTTTGTTGT
* * * *
42558 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAT-CCTAATCCT-A
1 GAAACCAAAGCATCAATATCATGTATCTTAAGGAGAAGACTACGTTTATAG-TGCCTAATCCTGA
* * * * ** * * * * *
42621 ACCAGAATGGGGATTATTATGAGTATTCATGTTTGTCTTAGATAGGAGACAAACCCTGAATCTAC
65 A-AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCATATTTAAGAGATAAACTCTGATTCTAT
** * * *
42686 CAAAAATAGTTGGAAAAAAAGGTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGA
129 CAAAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGA
* * * **
42751 AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAACTGAGACTATAATGAGAATCGATGCCGGT
194 AGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACTGTTATGAGAATCGATGCTTGT
* * * ** * * * * * * **
42816 CTTATTT-GAGCGATGAACTTTCACGTTGAGAAAAATAGGGCAAAGAAAAGATTTTCAAACAAAA
258 CTTATTTAG-GGGATGAATTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTTTCAGGCAAAA
* ** * * * *
42880 GAAAATCATCATTGTCATTTTTCC-AGATGAGAAG-ATTATGTTTGTAGTGCCTAATCACAAAAA
322 GAAAATCATCAATGTCATTTACCCTA-ATGCGGAGAATT-TGTTTATAGTGCCTTATCACAAAAA
*
42943 TAATGAAGATCATTATTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAA
385 TAATGAAGATCATTATTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* ** *
43008 ATTGGTGAGAAGAAAGGTTTTGTTGC
450 ATTGGTGGGAAGAAAGCCTTTGTTGT
* *
43034 GAAACCAAAGTATCAATATCATGTATCTTAAGGAGAAGACTACGTTTATAGTGCCTAAACCTGAA
1 GAAACCAAAGCATCAATATCATGTATCTTAAGGAGAAGACTACGTTTATAGTGCCTAATCCTGAA
* *
43099 AAGAATGGGGATTAGTGTGAGTTTTCATGTTTGTCGTATTTAAGAGATAAACTCTGATTCTATCA
66 AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCATATTTAAGAGATAAACTCTGATTCTATCA
43164 AAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAG
131 AAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAG
*
43229 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCT
196 GAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT-GAGACTGTTATGAGAATCGATGCTTGTCT
*
43294 TATTTAGGGGATGAATTTTGATTTTAAGGATAATTGGGTAAAGAAAATA-TTTCTAGGCGAAAGA
260 TATTTAGGGGATGAATTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTTTC-AGGCAAAAGA
* *
43358 AAATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCA-GAAAAGAAT
324 AAATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCACAAAAATAAT
* * * * *
43422 GAAGATCATT-TCTAGAATCCATGTTTTTCTCATTTGAGGCATGAATTTAGACCTTACAAAAATT
389 GAAGATCATTAT-TAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
43486 GGTGGGAAGAAAGCCTTTGTTGT
453 GGTGGGAAGAAAGCCTTTGTTGT
* * * * * **
43509 GAAACCAAAGCATCAATATCCTGTATCATAATGCGAAGAATGTGTTTATAGTGCCT
1 GAAACCAAAGCATCAATATCATGTATCTTAAGGAGAAGACTACGTTTATAGTGCCT
43565 TATCACAAAA
Statistics
Matches: 855, Mismatches: 136, Indels: 32
0.84 0.13 0.03
Matches are distributed among these distances:
474 8 0.01
475 446 0.52
476 388 0.45
477 13 0.02
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (475 bp):
GAAACCAAAGCATCAATATCATGTATCTTAAGGAGAAGACTACGTTTATAGTGCCTAATCCTGAA
AAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCATATTTAAGAGATAAACTCTGATTCTATCA
AAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAG
GAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAGACTGTTATGAGAATCGATGCTTGTCTT
ATTTAGGGGATGAATTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTTTCAGGCAAAAGAAA
ATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCACAAAAATAATGA
AGATCATTATTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTGTTGT
Found at i:43497 original size:158 final size:158
Alignment explanation
Indices: 43334--43655 Score: 398
Period size: 158 Copynumber: 2.0 Consensus size: 158
43324 TAATTGGGTA
* * * * * * * *
43334 AAGAAAATATTTCTAGGCGAAAGAAAATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTT
1 AAGAAAACATTTCT-GGCGAAACAAAAGCATCAATATCATGTACCATAATGCGAAGAATGTGTTT
* * * *
43399 ATAGTGCCTTATCA-GAAAAGAATGAAGATCATT-TCTAGAATCCATGTTTTTCTCATTTGAGGC
65 ATAGTGCCTTATCACAAAAAGAATGAAGATCATTAT-TAGAATCCATGTTTGTCGCATTAGAGGC
* *
43462 ATGAATTTAGACCTTACAAAAATTGGTGGG
129 ACGAACTTAGACCTTACAAAAATTGGTGGG
* * * * * * * *
43492 AAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCCTGTATCATAATGCGAAGAATGTGTTTA
1 AAGAAAACATTTCTGGCGAAACAAAAGCATCAATATCATGTACCATAATGCGAAGAATGTGTTTA
43557 TAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCATGTTTGTCGCATTAGAGGCAC
66 TAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCATGTTTGTCGCATTAGAGGCAC
*
43622 GAACTTAGACTTTACAAAAATTGGTGGG
131 GAACTTAGACCTTACAAAAATTGGTGGG
43650 -AGAAAA
1 AAGAAAA
43656 GCCTTCCTTG
Statistics
Matches: 138, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
157 57 0.41
158 80 0.58
159 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
AAGAAAACATTTCTGGCGAAACAAAAGCATCAATATCATGTACCATAATGCGAAGAATGTGTTTA
TAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCATGTTTGTCGCATTAGAGGCAC
GAACTTAGACCTTACAAAAATTGGTGGG
Found at i:43563 original size:157 final size:158
Alignment explanation
Indices: 43380--43699 Score: 457
Period size: 158 Copynumber: 2.0 Consensus size: 158
43370 TCATTTACCC
* * *
43380 TAATGCGGAGAATTTGTTTATAGTGCCTTATCA-GAAAAGAATGAAGATCATT-TCTAGAATCCA
1 TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAT-TAGAATCCA
* * * * * **
43443 TGTTTTTCTCATTTGAGGCATGAATTTAGACCTTACAAAAATTGGTGGGA-AGAAAGCCTTTGTT
65 TGTTTGTCGCATTAGAGGCACGAACTTAGACCTTACAAAAATTGGTGGGAGA-AAAGCCTTCCTT
*
43507 GTGAAACCAAAGCATCAATATCCTGTATCA
129 GTGAAACCAAAACATCAATATCCTGTATCA
43537 TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCAT
1 TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCAT
*
43602 GTTTGTCGCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGAAAAGCCTTCCTTGT
66 GTTTGTCGCATTAGAGGCACGAACTTAGACCTTACAAAAATTGGTGGGAGAAAAGCCTTCCTTGT
* * * *
43667 GAAACCAAAATATCAATGTCGTGTATCC
131 GAAACCAAAACATCAATATCCTGTATCA
43695 TAATG
1 TAATG
43700 ACAAGACCTC
Statistics
Matches: 144, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
157 31 0.22
158 111 0.77
159 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (158 bp):
TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCAT
GTTTGTCGCATTAGAGGCACGAACTTAGACCTTACAAAAATTGGTGGGAGAAAAGCCTTCCTTGT
GAAACCAAAACATCAATATCCTGTATCA
Found at i:43784 original size:633 final size:632
Alignment explanation
Indices: 42918--44154 Score: 1721
Period size: 633 Copynumber: 2.0 Consensus size: 632
42908 GAGAAGATTA
* * *
42918 TGTTTGTAGTGCCTAATCACAAAAATAATGAAGATCATTATTAGAATCCAAGTTTGTCTCATTTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTATTAGAATCCAAGTTTGTCGCATTTA
** ** *
42983 AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGGTTTTGTTGCGAAACCAAAGTATC
66 AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTCCTTGCGAAACCAAAATATC
* * *
43048 AATATCATGTATCTTAAGGAGAAGACTACGTTTATAGTGCCTAAACCTGAAAAGAATGGGGATTA
131 AATATCATGTATCCTAAGGACAAGACTACGTTTATAGTGCCTAAACCTGAAAAGAACGGGGATTA
* * * * * *
43113 GTGTGAGTTTTCATGTTTGTCGTATTTAAGAGATAAACTCTGATTCTATCAAAAGCAGTGGGAAG
196 GTATGAGTATTCATGCTTGTCGTATTTAAGAGATAAACTCTGATTCTATAAAAAACAGTGGAAAG
* * *
43178 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGGAATGTGTTTTGG
261 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAAGCAATGTGTTTTGG
** * *
43243 CTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAGGGGATGA
326 CTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTCAGGGGATGA
** * * * * * * *
43308 ATTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTTCTAGGCGAAAGAAAATCATCAATGTCA
391 ACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCAGGCAAAAGAAAATCATCAATGTCA
* * ** **
43373 TTTACCCTAATGCGGAGAATTTGTTTATAGTGCC-TTATC-AGAAAAGAATGAAGATCATTTCTA
456 TTTACCCTAATGAGGAG--TGTGTTTATAGTGCCTTTATCGA-AAAAGAAAAAAGATCATTAATA
* * ** *
43436 GAATCCATGTTTTTCTCATTTGAGGCATGAATTTAGACCTTACAAAAATTGGTGGGAAGAAAGCC
518 GAATCCATGTTTGTCTCATTTCAGGCATGAACATAGACCTTACAAAAATTGATGGGAAGAAAGCC
*
43501 TTTGTTGTGAAACCAAAGCATCAATATCCTGTATCATAATGCGAAGAATG
583 TTTGTTGCGAAACCAAAGCATCAATATCCTGTATCATAATGCGAAGAATG
* *
43551 TGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCATGTTTGTCGCA-TTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTATTAGAATCCAAGTTTGTCGCATTTA
* *
43615 GAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAGAAAAGCCTTCCTTGTGAAACCAAAATA
66 -AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAG-AAAGCCTTCCTTGCGAAACCAAAATA
* * * * ** * *
43679 TCAATGTCGTGTATCCTAATGACAAGACCT-CGTTTATGGTGCCTATTCCTGAAAA-TACGAGTG
129 TCAATATCATGTATCCTAAGGACAAGA-CTACGTTTATAGTGCCTAAACCTGAAAAGAACG-GGG
* * *
43742 ATTAGTATGAGTATTCATGCTTGTCTTATTTAATAGATAAACTTTGATTCTATAAAAAACAGTGG
192 ATTAGTATGAGTATTCATGCTTGTCGTATTTAAGAGATAAACTCTGATTCTATAAAAAACAGTGG
* * *
43807 AAAGAAAAGCTTTTCTTGCGACACCAAGGCGTCAATGTCATGTATCCTAACGAAAGCTATGTGTT
257 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAAGCAATGTGTT
43872 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTCAGGGG
322 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTCAGGGG
*
43937 ATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
387 ATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCAGGCAAAAGAAAATCATCAAT
* *
44002 GTCATTTATCCTAATGAGGAGTGTGTTTATAGTGCCTTTTTCGCAAAAAGAAAAAAGATCATTAA
452 GTCATTTACCCTAATGAGGAGTGTGTTTATAGTGCCTTTATCG-AAAAAGAAAAAAGATCATTAA
* * *
44067 TAGAATCCATGTTTGTCTTATTTCAGGCATTAACATAGACTTTACAAAAATTGATGGGAAGAAAG
516 TAGAATCCATGTTTGTCTCATTTCAGGCATGAACATAGACCTTACAAAAATTGATGGGAAGAAAG
* *
44132 CTTTTGTTGCGGAACCAAAGCAT
581 CCTTTGTTGCGAAACCAAAGCAT
44155 AAAAATCATT
Statistics
Matches: 526, Mismatches: 71, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
631 14 0.03
632 12 0.02
633 497 0.94
634 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (632 bp):
TGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTATTAGAATCCAAGTTTGTCGCATTTA
AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTCCTTGCGAAACCAAAATATC
AATATCATGTATCCTAAGGACAAGACTACGTTTATAGTGCCTAAACCTGAAAAGAACGGGGATTA
GTATGAGTATTCATGCTTGTCGTATTTAAGAGATAAACTCTGATTCTATAAAAAACAGTGGAAAG
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAAGCAATGTGTTTTGG
CTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTATTCAGGGGATGA
ACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCAGGCAAAAGAAAATCATCAATGTCA
TTTACCCTAATGAGGAGTGTGTTTATAGTGCCTTTATCGAAAAAGAAAAAAGATCATTAATAGAA
TCCATGTTTGTCTCATTTCAGGCATGAACATAGACCTTACAAAAATTGATGGGAAGAAAGCCTTT
GTTGCGAAACCAAAGCATCAATATCCTGTATCATAATGCGAAGAATG
Found at i:43894 original size:475 final size:472
Alignment explanation
Indices: 43532--47509 Score: 4148
Period size: 475 Copynumber: 8.4 Consensus size: 472
43522 CAATATCCTG
* *
43532 TATCATAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAA
1 TATCCTAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* *
43597 TCCATGTTTGTCGCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AGAAAAGCCTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTT
** * * * * * *
43661 CCTTGTGAAACCAAAATATCAATGTCGTGTATCCTAATGACAAGACCT-CGTTTATGGTGCCTAT
130 TGTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGA-CTACGTTTATGGTGCCTAA
* * * * * * *
43725 TCCTGAAAATACGAGTGATTAGTATGAGTATTCATGCTTGTCTTATTTAATAGATAAACTTTGAT
194 TCCTGAAAAAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAT
* * * *
43790 TCTATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAGGCGTCAATGTCATGTATCCT
258 TCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCT
* *
43855 AACGAAAGCTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATG
323 AACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATG
* * * * * * *
43920 CTTGCCTTATTCAGGGGATGAACATTGAT-TTGAAGGATAATAGAGCAAAGAAAAGATTTCCATG
387 CTTGTCTTATTTAAGGGATGAACTTTGATGTT-AA--AAAATTGGGCAAAGAAAAGATTTCCATG
43984 CAAAAGAAAATCATCAATGTCATT
449 CAAAAGAAAATCATCAATGTCATT
* * * * ** *
44008 TATCCTAAT--GAGGAGTGTGTTTATAGTGCCTTTTTCGCAAAAAGAAAAAAGATCATTAATAGA
1 TATCCTAATGCGAAGAATGTGTTTATAGTGCC-TTATCACAAAAAGAATGAAGATCATTACTAGA
* * ** * * *
44071 ATCCATGTTTGTCTTATTTCAGGCATTAACATAGACTTTACAAAAATTGATGGGAAGAAAGCTTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * * * * * **
44136 TGTTGCGGAACCAAAGCATAAAAATCATTTATCCGATTGA-AGAGAATGTGTTTATGGTGCCTAA
130 TGTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGA-AGACTACGTTTATGGTGCCTAA
* * *
44200 ACCTGAAAATAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACTAACAT-TGA
194 TCCTGAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-TCTGA
* *
44264 TTCTATC-AAAA-A-TGGCAAGAAAAAAGGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTA
257 TTCTATCAAAAACAGTGG-AA-AGAAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTA
* *
44326 TCCTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGGATC
319 TCCTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-CGAGAATC
* * * *
44391 GATGCTTGTCTTATTCAACGGATGAACTTTCATGTTAAGGAAAATAGGGCAACA-AAAAGATTTC
383 GATGCTTGTCTTATTTAAGGGATGAACTTTGATGTTAA--AAAATTGGGCAA-AGAAAAGATTTC
* *
44455 TATGCAAAAGGAAATCATCAATGTCATT
445 CATGCAAAAGAAAATCATCAATGTCATT
* * * * *
44483 TATCCT-ATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAAAGAATGAAGACCATTACTAGAA
1 TATCCTAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* ** * * * *
44547 TCCATGTTTATCTCATTTGAGGCTTGAACATAGACTTTAAAAAAATTGTTGCGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * * * * *
44612 GTTGCAAAACCATAGCATCAATATCATGTATCCGAATGAGAAAACCATGTTTATGGTGCCTAATC
131 GTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAATC
* * ** * *
44677 CTTAAAAAAATGGGGATTATTATGAGTATTTGTGTTTGTCTTATTTAGGAGACAAACTCTGAATC
196 C-TGAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGATTC
* * * * * *
44742 TACCAAAAACAGTGGGAAGAAAAGCTTTTCTTGCAACACTAAAGCTTCAATGTCATGTATCCTAA
260 TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAA
* * * * * *
44807 TGAAGGCAATGTGTTTTGGCTTCCTAATCTTGAAAATAATGGAGACTATTACGAGAATCGATGCC
325 CGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-CGAGAATCGATGCT
* * * * * * * *
44872 TGTCTTATTTAAGGGATGAACTTTCACGTTGAGGAAAATAGGGTAATGAAAAGATTTGCAAGCAA
389 TGTCTTATTTAAGGGATGAACTTTGATGTT-A-AAAAATTGGGCAAAGAAAAGATTTCCATGCAA
44937 AAGAAAATCATCAATGTCATT
452 AAGAAAATCATCAATGTCATT
* * * * *
44958 TATCC-AGATGAGAAG-ATCGTGTTTGTAGTGCCTAATCACAAAAATAATGAAGATGATTACTAG
1 TATCCTA-ATGCGAAGAAT-GTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAG
* * * * *
45021 AATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACATCACAAAAATTGGTGGGAAGAAAGCGT
64 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* * * * * *
45086 TTGTTGTGAAACCAAACCATCAACATCATGTATCCTAAGGAGAAGACTACGTTTTTCGTGCCTAA
129 TTGTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAA
* * *
45151 TCCTGAAAAGAATGGGGA-TAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTCTGAG
194 TCCTGAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAT
** * *
45215 TCTATCAAAAACAACAGG-AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTCTCC
258 TCTATCAAAAAC-AGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC
* * ** * * * *
45279 TAAC-AAAGGGAATGTGTTTTGGTTTCCCAATCTTGAATGGAATGGAAATTGTTATGAGAGTCGA
322 TAACGAAA-GCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-CGAGAATCGA
* ** * * *
45343 TGCTTATCTTATCCAAGGGATGAACTTTGATTTTAAGAATAATTGGGTAAAGAACAGATTTCCAT
385 TGCTTGTCTTATTTAAGGGATGAACTTTGATGTTAA-AA-AATTGGGCAAAGAAAAGATTTCCAT
* * * *
45408 GCAAAAG--GATTATCAATGTTAGT
448 GCAAAAGAAAATCATCAATGTCATT
45431 TATCCTAATGCGAAGAATGTGTTTATATAGTGCCTTATCACAAAAA-AAGTGAAGATCATTACTA
1 TATCCTAATGCGAAGAATGTG-TT-TATAGTGCCTTATCACAAAAAGAA-TGAAGATCATTACTA
* * * * **
45495 GAATCCATGTTTGTCTTATTCGAGGCACGAACTTAGACATTACAAAAATTGATGGGAAGAAAGAT
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
* * *
45560 TTTGTTGCGAAACCAAAATATCAATATC--GATATCCTAATGGGAAGACTTCGTTTATGGTGCCT
128 TTTGTTGCGAAACCAAAACATCAATATCATG-TATCCTAATGAGAAGACTACGTTTATGGTGCCT
* * * * * * *
45623 AATTCTAAAAATAAAGGGGATTAGTATGAGTATTCTTGTTTGTTTTATTTAAGAGACAAACTTTA
192 AATCCTGAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTG
* * * ** *
45688 ATTCTATAAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAGGTGTCAATGTCATGTATC
256 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATC
* * * * *
45752 CTAATGAAAGCTATGTGTTTTGGCTTACCAATCTTGAAAA-AAGTGAAGACTATTCCGAGAATCG
321 CTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGGAGACTGTT-CGAGAATCG
* * * * * * *
45816 ATGCTTATCTTATTCAAGGGATGAACTTTGATTTTAAGGATAGTAGGGCATAGAAAAGATTTCCA
384 ATGCTTGTCTTATTTAAGGGATGAACTTTGATGTTAA--AAAATTGGGCAAAGAAAAGATTTCCA
*
45881 TGCAAAAGAAAATCATCAATCTCATT
447 TGCAAAAGAAAATCATCAATGTCATT
* * **
45907 TATCCTAACGAC-AAGAATGTGTTTATAGTGCCTTTTCACAAAAAGAAAAAAGATCATTACTAGA
1 TATCCTAATG-CGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGA
* * * * * *
45971 ATCCATGTTTGCCTTATTTGAGGCACAAACATAAACTTTACAAAAATTGATGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * * * ** * * * * **
46036 TGTTGTGAAA-CAAAAGCCTAAAAATTGTTTATCCGAATAAAGAA-AATGTGTTTATGGTGCCTA
130 TGTTGCGAAACCAAAA-CATCAATATCATGTATCCTAAT-GAGAAGACTACGTTTATGGTGCCTA
* * * * * *
46099 GTACTAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGCTAA
193 ATCCTGAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGA
* *
46164 TTCTAT-AAAAA-A-TGACGAAAAAAAAAGCTTTACTTGCGACACCAAAGCATCAATGTCGTGTA
257 TTCTATCAAAAACAGTG--G-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTA
* * * * * *
46226 TCATAACG-AAGTTAATGTGTTTTGGCTTCCCAATCTTGAAAGGAATGGGGATTGTTACGAGGAT
319 TCCTAACGAAAG-CAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-CGAGAAT
* * * * * *
46290 CGATACTTGACTTATTCAAGGGATGAACCTTCAT-TCTAAGGAAAATAGGGCAAAGAAAAGATTT
382 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATGT-TAA--AAAATTGGGCAAAGAAAAGATTT
*
46354 CCATGCAAAGGAAAATCATCAATGTCATT
444 CCATGCAAAAGAAAATCATCAATGTCATT
* * * * *
46383 TATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAGGATCATTACTAGAA
1 TATCCTAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * *
46448 TCCATGTTTGCCTCGTTGGAGGCATGAATATATAGACTTTACAAAAATTGGTGGGAAAAAAACCT
66 TCCATGTTTGTCTCATTTGAGGCACGAA-CT-TAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* * * * *
46513 TTATTGCGAAACCAAATCATCAATATCATGTATCCGAATGAGAAGACTATGTTTATGGAGCCTAA
129 TTGTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAA
* * *
46578 TCCT-AACAAGAATGGGGATTATTATGAGTATTCATGTTTGTCTTAGTTAGGAGACAAAC-CTTG
194 TCCTGAA-AA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTC-TG
* * * * * * * ** *
46641 AATCTACCAAAAATAGCGGGAA-AAAAGGTTTTCTTTCGATGCCAAAGCATCAATGTTGTGTATC
256 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATC
* * * *
46705 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAACGAATGGAGACTATAAT-GAGAATCA
321 CTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT--TCGAGAATCG
* * * * * * *
46769 ATG-TCGGTCTTATTTGAGGGATGAACTTTCAAGTTGAGGAAAATAGGGCAAAGAAAAGATTTTC
384 ATGCT-TGTCTTATTTAAGGGATGAACTTTGATGTT-A-AAAAATTGGGCAAAGAAAAGATTTCC
* * *
46833 AAGTAAAAGAAAATCATCAATCTCATT
446 ATGCAAAAGAAAATCATCAATGTCATT
* * * * * * * *
46860 TTTCC-ATATGAGAAGATTATGTTTGTAGTGCCTAATTACAAAAATAATGAAGATCATTACTAGA
1 TATCCTA-ATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGA
* * * *
46924 ATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCTTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
* * *
46989 TGTTGCGAAACCAAAGCATCAATATCATGTATCCTAAGGAGAAGACTACGTTTATAGTGCCTAAT
130 TGTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAAT
* * *
47054 CCTGAAAAAAATGGGGATTAGTGTGAGTGTTCATGTTTGTCTTATTTAAGAGATAAACTCTGATT
195 CCTG-AAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGATT
* * *
47119 CTATCAAAAACAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCTTG
259 CTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
* * * * * *
47184 ACGAAGGGAATGTGTTTTGGATTCCCAATCTTGAAAGGAATGGAGACTGTTATGAGAAT-TAGTG
324 ACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-CGAGAATCGA-TG
* * * * * *
47248 CTTGTCTTATTTAGGGGATGAACTTTGATTTTTAAGGATAATTGGGTAAAGAAAATATTTCCAAG
387 CTTGTCTTATTTAAGGGATGAACTTTGA-TGTTAA--AAAATTGGGCAAAGAAAAGATTTCCATG
*
47313 CGAAAGAAAATCATCAATGTCATT
449 CAAAAGAAAATCATCAATGTCATT
* * * *
47337 TACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCAC-AAAAGAATGAAGATCATTTCTAGAA
1 TATCCTAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * *
47401 TCCATGTTTGTCTCATTTGAGGCACAAATTTAAACCTTACAAAAATTGGTGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * * *
47466 GTTGTGAAACCAAAGCATCAATATCGTGTATCATAATGCGAAGA
131 GTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGA
47510 ATGTGTTTAT
Statistics
Matches: 2922, Mismatches: 494, Indels: 172
0.81 0.14 0.05
Matches are distributed among these distances:
472 5 0.00
473 38 0.01
474 345 0.12
475 1338 0.46
476 726 0.25
477 320 0.11
478 137 0.05
479 11 0.00
480 1 0.00
481 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (472 bp):
TATCCTAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
GTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAATC
CTGAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCT
ATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAAC
GAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTCGAGAATCGATGCTTG
TCTTATTTAAGGGATGAACTTTGATGTTAAAAAATTGGGCAAAGAAAAGATTTCCATGCAAAAGA
AAATCATCAATGTCATT
Found at i:44504 original size:633 final size:632
Alignment explanation
Indices: 42906--44505 Score: 1486
Period size: 633 Copynumber: 2.5 Consensus size: 632
42896 ATTTTTCCAG
* * * * * * * *
42906 ATGAGAAGATTATGTTTGTAGTGCCTAATCACAAAAATAATGAAGATCATTATTAGAATCCAAGT
1 ATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAAAGAATGAAGATCAGTATGAGAATCCATGT
* ** * ** **
42971 TTGTCTCATTTA-AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGGTTTTGTTGCG
66 TTGTCGCA-TTAGAGGCACGAACTTAGACTTTACAAAAATTGGCAAGAAAAAAGCCTTCCTTGCG
** * * * * * * * *
43035 AAACCAAAGTATCAATATCATGTATCTTAAGGAGAAGAC-TACGTTTATAGTGCCTAAACCTGAA
130 AAACCAAAACATCAATGTCGTGTATCCTAACGACAAGACAT-CGTTTATGGTGCCCAATCCTGAA
* * ** ** * * * * * * *
43099 AAGAATG-GGGATTAGTGTGAGTTTTCATGTTTGTCGTATTTAAGAGATAAACTCTGATTCTATC
194 AAGAA-GAGAGACTAGTACGAGGATTCATGCTTGTCTTATTCAACAGATAAACTTTCATTCTATA
* * * * * *
43163 AAAAGCAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAA
258 AAAAACAGTGGAAAGAAAAGCATTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAACG-A
** *
43228 GG-GAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
322 GGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGC
* ** * * * * * * *
43292 CTTATTTAGGGGATGAATTTTGATTTTAAGGATAATTGGGTAAAGAAAATATTTCTAGGCGAAAG
387 CTTATTCAGGGGATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCAGGCAAAAG
* * *
43357 AAAATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCAGAAAAGAAT
452 AAAATCATCAATGTCATTTACCCTAATGAGGAG-ATGTGTTTATAGTGCCTTATCAGAAAAGAAA
* ** * * **
43422 GAAGATCATTTCTAGAATCCATGTTTTTCTCATTTGAGGCATGAATTTAGACCTTACAAAAATTG
516 AAAGATCATTAATAGAATCCATGTTTGTCTCATTTCAGGCATGAACATAGACCTTACAAAAATTG
* * * * * *
43487 GTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCCTGTATCATA
581 ATGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCAGA
* * * * *
43539 ATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAATCCATGT
1 ATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAAAGAATGAAGATCAGTATGAGAATCCATGT
*** * *
43604 TTGTCGCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGAAAAGCCTTCCTTGTGA
66 TTGTCGCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGCAAGAAAAAAGCCTTCCTTGCGA
* * * * *
43669 AACCAAAATATCAATGTCGTGTATCCTAATGACAAGACCTCGTTTATGGTGCCTATTCCTGAAAA
131 AACCAAAACATCAATGTCGTGTATCCTAACGACAAGACATCGTTTATGGTGCCCAATCCTGAAAA
* * * * * * * * *
43734 TACGAGTGATTAGTATGAGTATTCATGCTTGTCTTATTTAATAGATAAACTTTGATTCTATAAAA
196 GAAGAGAGACTAGTACGAGGATTCATGCTTGTCTTATTCAACAGATAAACTTTCATTCTATAAAA
* * * * * *
43799 AACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAGGCGTCAATGTCATGTATCCTAACGA-AAG
261 AACAGTGGAAAGAAAAGCATTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAACGAGGAG
*
43863 CTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTT
326 -AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTT
*
43928 ATTCAGGGGATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAA
390 ATTCAGGGGATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCAGGCAAAAGAAA
* *
43993 ATCATCAATGTCATTTATCCTAATGAGGAG-TGTGTTTATAGTGCCTTTTTC-GCAAAAAGAAAA
455 ATCATCAATGTCATTTACCCTAATGAGGAGATGTGTTTATAGTGCC-TTATCAG--AAAAGAAAA
* * *
44056 AAGATCATTAATAGAATCCATGTTTGTCTTATTTCAGGCATTAACATAGACTTTACAAAAATTGA
517 AAGATCATTAATAGAATCCATGTTTGTCTCATTTCAGGCATGAACATAGACCTTACAAAAATTGA
* * * *
44121 TGGGAAGAAAGCTTTTGTTGCGGAACCAAAGCATAAAAATCATTTATCCGA
582 TGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCAGA
* * * * ** * * * *
44172 TTGA-AGAGAATGTGTTTATGGTGCCTAAAC-CTGAAAATAATGGGGATTAGTGTGAGTATTCAT
1 ATGAGA-AGAATGTGTTTATAGTGCCTAAACAC-AAAAAGAATGAAGATCAGTATGAGAATCCAT
** * *
44235 GTTTGTCTTATTTA-AGAG-ACTAACATT-GA-TTCTATCAAAAA-TGGCAAGAAAAAAGGCTTT
64 GTTTGTCGCA-TTAGAG-GCACGAAC-TTAGACTT-TA-CAAAAATTGGCAAGAAAAAA-GCCTT
* * * *
44295 CCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGA-AAG-CAAT-GTGTTTTGGCTTCCC
123 CCTTGCGAAACCAAAACATCAATGTCGTGTATCCTAACGACAAGAC-ATCGT-TTATGG-TGCCC
* * * *
44357 AATCTTGAAAAGAATAGAGACT-GTTACGAGGA-TCGATGCTTGTCTTATTCAACGGATGAACTT
185 AATCCTGAAAAGAAGAGAGACTAG-TACGAGGATTC-ATGCTTGTCTTATTCAACAGATAAACTT
* * ** *
44420 TCATGT-TA-AGGAAAATAG-GGCAACA-AAAAG-ATTTCTATGCAAAAGGAAATCATCAATGTC
248 TCAT-TCTATA-AAAAACAGTGG-AA-AGAAAAGCATTTCT-TGCAAAACCAAAGCATCAATGTC
* *
44480 ATTTATCCT-ATGAGGAGAATGTGTTT
308 ATGTATCCTAACGAGGAGAATGTGTTT
44506 ATGGTGCCTA
Statistics
Matches: 799, Mismatches: 141, Indels: 54
0.80 0.14 0.05
Matches are distributed among these distances:
631 15 0.02
632 17 0.02
633 621 0.78
634 144 0.18
635 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (632 bp):
ATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAAAGAATGAAGATCAGTATGAGAATCCATGT
TTGTCGCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGCAAGAAAAAAGCCTTCCTTGCGA
AACCAAAACATCAATGTCGTGTATCCTAACGACAAGACATCGTTTATGGTGCCCAATCCTGAAAA
GAAGAGAGACTAGTACGAGGATTCATGCTTGTCTTATTCAACAGATAAACTTTCATTCTATAAAA
AACAGTGGAAAGAAAAGCATTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAACGAGGAG
AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGCCTTA
TTCAGGGGATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCAGGCAAAAGAAAA
TCATCAATGTCATTTACCCTAATGAGGAGATGTGTTTATAGTGCCTTATCAGAAAAGAAAAAAGA
TCATTAATAGAATCCATGTTTGTCTCATTTCAGGCATGAACATAGACCTTACAAAAATTGATGGG
AAGAAAGCCTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCAGA
Found at i:44940 original size:950 final size:948
Alignment explanation
Indices: 43532--47497 Score: 4602
Period size: 950 Copynumber: 4.2 Consensus size: 948
43522 CAATATCCTG
* * *
43532 TATCATAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTATTAGAA
1 TATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* *
43597 TCCATGTTTGTCGCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AGAAAAGCCTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTT
** * * * * * * *
43661 CCTTGTGAAACCAAAATATCAATGTCGTGTATCCTAATGACAAGACC-TCGTTTATGGTGCCTAT
130 TGTTGCGAAACCAAAACATCAATATCATGTATCCGAATGAGAAGACCATCGTTTATGGTGCCTAA
* * * * * * * * *
43725 TCCTGAAAATACGAGTGATTAGTATGAGTATTCATGCTTGTCTTATTTAATAGATAAACTTTGAT
195 TCCTAAAAAAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAA
* * *
43790 TCTATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAGGCGTCAATGTCATGTATCCT
259 TCTACAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGTATCCT
* * *
43855 AACGAAAGCTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATG
324 AACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATG
* * * * * * * * *
43920 CTTGCCTTATTCAGGGGATGAACATTGATTTGAAGGATAATAGAGCAAAGAAAAGATTTCCATGC
389 CCTGTCTTATTCAAGGGATGAACTTTCAGTTG-AGGAAAATAGGGCAAAGAAAAGATTTCCAAGC
* * *
43985 AAAAGAAAATCATCAATGTCATTTATCCTA-ATGAGGAGTGTGTTTATAGTGCCTTTTTCGCAAA
453 AAAAGAAAATCATCAATCTCATTTATCC-AGATGAGGAGTGTGTTTATAGTGCC-TATTCACAAA
* * * * **
44049 AAGAAAAAAGATCATTAATAGAATCCATGTTTGTCTTATTTCAGGCATTAACATAGACTTTACAA
516 AAGAAAAAAGATCATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAA
* * *
44114 AAATTGATGGGAAGAAAGCTTTTGTTGCGGAACCAAAGCATAAAAATCATTTATCCGATTGAAG-
581 AAATTGATGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCCGA-AGAAGA
** *
44178 AGAATGTGTTTATGGTGCCTAAACCTGAAAATAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
645 AGAATACGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
* *
44243 TATTTAAGAGACT-AACAT-TGATTCTATCAAAAATGGCAAGAAAAAAGGCTTTCCTTGCGACAC
710 TATTTAAGAGA-TAAAC-TCTGATTCTATCAAAAATGACAAGAAAAAA-GCTTTTCTTGCGACAC
* *
44306 CAAAGCATCAATGTCGTGTATCCTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
772 CAAAGCATCAATGTCGTGTATCCTAACGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAA
* * *
44371 TAGAGACTGTTACGAGGATCGATGCTTGTCTTATTCAACGGATGAACTTTCATGTTAAGGAAAAT
837 TGGAGACTGTTACGAGGATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGAAAAT
*
44436 AGGGCAACA-AAAAGATTTCTATGCAAAAGGAAATCATCAATGTCATT
902 AGGGCAA-AGAAAAGATTTCCATGCAAAAGGAAATCATCAATGTCATT
* * * *
44483 TATCCT-ATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAAAGAATGAAGACCATTACTAGAA
1 TATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* ** * * * *
44547 TCCATGTTTATCTCATTTGAGGCTTGAACATAGACTTTAAAAAAATTGTTGCGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * *
44612 GTTGCAAAACCATAGCATCAATATCATGTATCCGAATGAGAAAACCAT-GTTTATGGTGCCTAAT
131 GTTGCGAAACCAAAACATCAATATCATGTATCCGAATGAGAAGACCATCGTTTATGGTGCCTAAT
* ** *
44676 CCTTAAAAAAATGGGGATTATTATGAGTATTTGTGTTTGTCTTATTTAGGAGACAAACTCTGAAT
196 CC-TAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAAT
* * * *
44741 CTACCAAAAACAGTGGGAAGAAAAGCTTTTCTTGCAACACTAAAGCTTCAATGTCATGTATCCTA
260 CTACAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTA
* * * *
44806 ATGAAGGCAATGTGTTTTGGCTTCCTAATCTTGAAAATAATGGAGACTATTACGAGAATCGATGC
325 ACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGC
* * * *
44871 CTGTCTTATTTAAGGGATGAACTTTCACGTTGAGGAAAATAGGGTAATGAAAAGATTTGCAAGCA
390 CTGTCTTATTCAAGGGATGAACTTTCA-GTTGAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCA
* * * *
44936 AAAGAAAATCATCAATGTCATTTATCCAGATGAGAAGATCGTGTTTGTAGTGCCTAATCACAAAA
454 AAAGAAAATCATCAATCTCATTTATCCAGATGAGGAG-T-GTGTTTATAGTGCCTATTCACAAAA
* ** * * * *
45001 ATAATGAAGATGATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACATCACAAA
517 AGAAAAAAGATCATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAA
* * * * * * * *
45066 AATTGGTGGGAAGAAAGCGTTTGTTGTGAAACCAAACCATCAACATCATGTATCCTAAGGAGAAG
582 AATTGATGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCCGAAGAAGAAG
* * * *
45131 ACTACGTTTTTCGTGCCTAATCCTGAAAAGAATGGGGA-TAGTGTGAGTATTCATGTTTGTCTTA
647 AATACGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* ** * *
45195 TTTAAGAGATAAACTCTGAGTCTATCAAAAACAACAGGAAGAAAAGCTTTTCTTGCAACACCAAA
712 TTTAAGAGATAAACTCTGATTCTATCAAAAATGACAAGAA-AAAAGCTTTTCTTGCGACACCAAA
* * *
45260 GCATCAATGTCGTGTCTCCTAAC-AAAGGGAATGTGTTTTGGTTTCCCAATCTTGAATGGAATGG
776 GCATCAATGTCGTGTATCCTAACGAAA-GGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAATGG
* * * * * * *
45324 AAATTGTTATGA-GAGTCGATGCTTATCTTATCCAAGGGATGAACTTTGATTTTAA-GAATAATT
840 AGACTGTTACGAGGA-TCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGAA-AATA
* * * * *
45387 GGGTAAAGAACAGATTTCCATGCAAAAGG--ATTATCAATGTTAGT
903 GGGCAAAGAAAAGATTTCCATGCAAAAGGAAATCATCAATGTCATT
*
45431 TATCCTAATGCGAAGAATGTGTTTATATAGTGCCTTATCACAAAAA-AAGTGAAGATCATTACTA
1 TATCCTAATGCGGAGAATGTG-TT-TATAGTGCCTTATCACAAAAAGAA-TGAAGATCATTACTA
* * * * **
45495 GAATCCATGTTTGTCTTATTCGAGGCACGAACTTAGACATTACAAAAATTGATGGGAAGAAAGAT
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
* * * *
45560 TTTGTTGCGAAACCAAAATATCAATATC--GATATCCTAATGGGAAGA-CTTCGTTTATGGTGCC
128 TTTGTTGCGAAACCAAAACATCAATATCATG-TATCCGAATGAGAAGACCATCGTTTATGGTGCC
* * * *
45622 TAATTCTAAAAATAAAGGGGATTAGTATGAGTATTCTTGTTTGTTTTATTTAAGAGACAAACT-T
192 TAATCCTAAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCT
* * * *
45686 TAATTCTATAAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACC-AAGGTGTCAATGTCATGT
256 GAA-TCTACAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCT-TCAATGTCATGT
* * * * *
45749 ATCCTAATGAAAGCTATGTGTTTTGGCTTACCAATCTTGAAAA-AAGTGAAGACTATTCCGAGAA
319 ATCCTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGGAGACTATTACGAGAA
* * * * * * * *
45813 TCGATGCTTATCTTATTCAAGGGATGAACTTTGATTTTAAGGATAGTAGGGCATAGAAAAGATTT
383 TCGATGCCTGTCTTATTCAAGGGATGAACTTTCA-GTTGAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
45878 CCATGCAAAAGAAAATCATCAATCTCATTTATCCTAACGA-CAAGAATGTGTTTATAGTGCCTTT
447 CCAAGCAAAAGAAAATCATCAATCTCATTTATCC--A-GATGAGGAGTGTGTTTATAGTGCCTAT
* * * * * *
45942 TCACAAAAAGAAAAAAGATCATTACTAGAATCCATGTTTGCCTTATTTGAGGCACAAACATAAAC
509 TCACAAAAAGAAAAAAGATCATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGAC
* * * * ** *
46007 TTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGTGAAACAAAAGCCTAAAAATTGTTTATCCGA
574 TTTACAAAAATTGATGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCCGA
* ** * *
46072 ATAAAGAA-AATGTGTTTATGGTGCCTAGTA-CTAAAAAGAATGGGGATTAGTGTGAGTATTCAT
639 A-GAAGAAGAATACGTTTATGGTGCCTA-AACCTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
* * * * * *
46135 GTTTGTCTTATTTAAGAGACAAACGCTAATTCTATAAAAAATGACGAAAAAAAAAGCTTTACTTG
702 GTTTGTCTTATTTAAGAGATAAACTCTGATTCTATCAAAAATGAC-AAGAAAAAAGCTTTTCTTG
* *
46200 CGACACCAAAGCATCAATGTCGTGTATCATAACG-AAGTTAATGTGTTTTGGCTTCCCAATCTTG
766 CGACACCAAAGCATCAATGTCGTGTATCCTAACGAAAG-GAATGTGTTTTGGCTTCCCAATCTTG
* * * * * *
46264 AAAGGAATGGGGATTGTTACGAGGATCGATACTTGACTTATTCAAGGGATGAACCTTCATTCTAA
830 AAAGGAATGGAGACTGTTACGAGGATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAA
46329 GGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGGAAAATCATCAATGTCATT
895 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGG-AAATCATCAATGTCATT
* * * *
46383 TATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAGGATCATTACTAGAA
1 TATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * *
46448 TCCATGTTTGCCTCGTTGGAGGCATGAATATATAGACTTTACAAAAATTGGTGGGAAAAAAACCT
66 TCCATGTTTGTCTCATTTGAGGCACGAA-CT-TAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* * * *
46513 TTATTGCGAAACCAAATCATCAATATCATGTATCCGAATGAGAAGACTAT-GTTTATGGAGCCTA
129 TTGTTGCGAAACCAAAACATCAATATCATGTATCCGAATGAGAAGACCATCGTTTATGGTGCCTA
* * * *
46577 ATCCTAACAAGAATGGGGATTATTATGAGTATTCATGTTTGTCTTAGTTAGGAGACAAAC-CTTG
194 ATCCTAA-AAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTC-TG
* * * * * * ** * **
46641 AATCTACCAAAAATAGCGGGAA-AAAAGGTTTTCTTTCGATGCCAAAGCATCAATGTTGTGTATC
257 AATCTACAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGTATC
* * * * *
46705 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAACGAATGGAGACTATAATGAGAATCAA
322 CTAACGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGA
* * ** *
46770 TGTCGGTCTTATTTGAGGGATGAACTTTCAAGTTGAGGAAAATAGGGCAAAGAAAAGATTTTCAA
387 TGCCTGTCTTATTCAAGGGATGAACTTTC-AGTTGAGGAAAATAGGGCAAAGAAAAGATTTCCAA
* * * * * *
46835 GTAAAAGAAAATCATCAATCTCATTTTTCCATATGAGAAGATTATGTTTGTAGTGCCTAATT-AC
451 GCAAAAGAAAATCATCAATCTCATTTATCCAGATGAG--GAGTGTGTTTATAGTGCCT-ATTCAC
* ** *
46899 AAAAATAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTA
513 AAAAAGAAAAAAGATCATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTA
* * * * * *
46964 CAAAAATTGGTGAGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCTAAGGA
578 CAAAAATTGATGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCCGAAGAA
* * * * *
47029 GAAGACTACGTTTATAGTGCCTAATCCTGAAAAAAATGGGGATTAGTGTGAGTGTTCATGTTTGT
643 GAAGAATACGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGT
**
47094 CTTATTTAAGAGATAAACTCTGATTCTATCAAAAACAGTGGGAAG--AAAAGCTTTTCTTGCGAC
708 CTTATTTAAGAGATAAACTCTGATTCTATC-AAAA-A-TGACAAGAAAAAAGCTTTTCTTGCGAC
* * * *
47157 ACCAAAGCATCAATGTCGTGTATCTTGACGAAGGGAATGTGTTTTGGATTCCCAATCTTGAAAGG
770 ACCAAAGCATCAATGTCGTGTATCCTAACGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAGG
* * * * * *
47222 AATGGAGACTGTTATGAGAAT-TAGTGCTTGTCTTATTTAGGGGATGAACTTTGATTTTTAAGGA
835 AATGGAGACTGTTACGAGGATCGA-TGCTTGTCTTATTCAAGGGATGAACTTTCA-TTTTAAGGA
* * * * * * *
47286 TAATTGGGTAAAGAAAATATTTCCAAGCGAAAGAAAATCATCAATGTCATT
898 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGGAAATCATCAATGTCATT
* * *
47337 TACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCAC-AAAAGAATGAAGATCATTTCTAGAA
1 TATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * *
47401 TCCATGTTTGTCTCATTTGAGGCACAAATTTAAACCTTACAAAAATTGGTGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * *
47466 GTTGTGAAACCAAAGCATCAATATCGTGTATC
131 GTTGCGAAACCAAAACATCAATATCATGTATC
47498 ATAATGCGAA
Statistics
Matches: 2517, Mismatches: 433, Indels: 130
0.82 0.14 0.04
Matches are distributed among these distances:
948 24 0.01
949 361 0.14
950 957 0.38
951 351 0.14
952 103 0.04
953 609 0.24
954 103 0.04
955 7 0.00
956 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (948 bp):
TATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
GTTGCGAAACCAAAACATCAATATCATGTATCCGAATGAGAAGACCATCGTTTATGGTGCCTAAT
CCTAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTCTGAATC
TACAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTAA
CGAAAGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCC
TGTCTTATTCAAGGGATGAACTTTCAGTTGAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAA
AGAAAATCATCAATCTCATTTATCCAGATGAGGAGTGTGTTTATAGTGCCTATTCACAAAAAGAA
AAAAGATCATTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAAAATT
GATGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATAAAAATCATGTATCCGAAGAAGAAGAATA
CGTTTATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTA
AGAGATAAACTCTGATTCTATCAAAAATGACAAGAAAAAAGCTTTTCTTGCGACACCAAAGCATC
AATGTCGTGTATCCTAACGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTG
TTACGAGGATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCATGCAAAAGGAAATCATCAATGTCATT
Found at i:47528 original size:157 final size:157
Alignment explanation
Indices: 47342--47660 Score: 453
Period size: 158 Copynumber: 2.0 Consensus size: 157
47332 TCATTTACCC
* * *
47342 TAATGCGGAGAATTTGTTTATAGTGCCTTATCAC-AAAAGAATGAAGATCATTTCTAGAATCCAT
1 TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCAT
* * * ** *
47406 GTTTGTCTCATTTGAGGCACAAATTTAAACCTTACAAAAATTGGTGGGAAGAAA-GCCTTTGTTG
66 GTTTGTCACATTCGAGGCACAAACTTAAACCTTACAAAAATTGGTGGG-AGAAATGCCTTCCTTA
*
47470 TGAAACCAAAGCATCAATATCGTGTATCA
130 TGAAACCAAAACATCAAT-TCGTGTATCA
*
47499 TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCGT
1 TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCAT
* * * *
47564 GTTTGTCACATTCGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAGAAATGCCTTCCTTAT
66 GTTTGTCACATTCGAGGCACAAACTTAAACCTTACAAAAATTGGTGGGAGAAATGCCTTCCTTAT
* *
47629 GAAACCAAAATATCAATTCGTGTATCC
131 GAAACCAAAACATCAATTCGTGTATCA
47656 TAATG
1 TAATG
47661 ACAAGAACTT
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
157 51 0.36
158 92 0.64
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (157 bp):
TAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCAT
GTTTGTCACATTCGAGGCACAAACTTAAACCTTACAAAAATTGGTGGGAGAAATGCCTTCCTTAT
GAAACCAAAACATCAATTCGTGTATCA
Found at i:48179 original size:637 final size:633
Alignment explanation
Indices: 46867--48167 Score: 1574
Period size: 637 Copynumber: 2.0 Consensus size: 633
46857 ATTTTTCCAT
* * * * * *
46867 ATGAGAAGATTATGTTTGTAGTGCCTAATTACAAAAATAATGAAGATCATTACTAGAATCCAAGT
1 ATGAGAAGAATGTATTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCAAGT
* * * ** *
46932 TTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCTTTTGTTGCGA
66 TTGTCACATTCAAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTCCTTACGA
* *
46997 AACCAAAGCATCAATATCATGTATCCTAAGGAGAAGACTACGTTTATAGTGCCTAATCCTGAAAA
131 AACCAAAACATCAATATCATGTATCCTAAGGACAAGACTACGTTTATAGTGCCTAATCCTGAAAA
* * ** * *
47062 AAATGGGGATTAGTGTGAGTGTTCATGTTTGTCTTATTTAAGAGATAAACTCTGATTCTATCAAA
196 AAATGGGGATTAGTATGAGTATTCATGCCTGTCTTATTTAAGAGACAAACTCTGATTCTATAAAA
* * * * *
47127 AACAGTGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCTTGACGAAGGG
261 AACAGTGGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGC
* * *
47192 AATGTGTTTTGGATTCCCAATCTTGAAAGGAATGGAGACTGTTATGAGAATTAGTGCTTGTCTTA
326 AATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAATGAGTGCTTGTCTTA
* * * * * * * *
47257 TTTAGGGGATGAACTTTGATTTTTAAGGATAATTGGGTAAAGAAAATATTTCCAAGCGAAAGAAA
391 TTCAGGGCATGAACATTGATTTTTAAGGATAATAGAGCAAAGAAAAGATTTCCAAGCAAAAGAAA
* * **
47322 ATCATCAATGTCATTTACCCTAATGCGGAGAATTTGTTTATAGTGCCTTATCACAAAAGAATGAA
456 ATCATCAATGTCATTTACCCTAATGAGGAG-ATGTGTTTATAGTGCCTTATCACAAAAGAAAAAA
** * ** **
47387 GATCATTTCTAGAATCCATGTTTGTCTCATTTGAGGCACAAATTTAAACCTTACAAAAATTGGTG
520 GATCATTAATAGAATCCATGTTTGTCTCATTTCAGGCACAAACATAAACCTTACAAAAATTGACG
* * * * * *
47452 GGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCATA
585 GGAAGAAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATGTATCAGA
* * * **
47501 ATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCGTGT
1 ATGAGAAGAATGTATTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCAAGT
* * * *
47566 TTGTCACATTCGAGGTACGAACTTAGACTTTACAAAAATTGGTG-GGAGAAATGCCTTCCTTATG
66 TTGTCACATTCAAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAA-GCCTTCCTTACG
* * * * * * *
47630 AAACCAAAATATCAAT-TCGTGTATCCTAATGACAAGAACT-TGTTTGTGGTGCCTATTCCTGAA
130 AAACCAAAACATCAATATCATGTATCCTAAGGACAAG-ACTACGTTTATAGTGCCTAATCCTGAA
* * *
47693 AATTAA-GGTGATTAGTATGAGTATTCATGCCTGTCTTATTTAAGAGACAAACTTTGATTCTATA
194 AA-AAATGGGGATTAGTATGAGTATTCATGCCTGTCTTATTTAAGAGACAAACTCTGATTCTATA
* * *
47757 AAAAACGGTGGGAAAAAAAGCTTTTCTCTTGCGACACCAAGGCGTCAATGTCATGTATCCTAATC
258 AAAAACAGTGGGAAAAAAAGC-TTT-TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-C
* * *
47822 TTGAAGGCTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGTGACTGTTATAAGAATCGA-TG
320 --GAAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAAT-GAGTG
* *
47886 CTTGTCTTATTCAGGGCATGAACATTGA-TTTTAAGGATAATAGAGCAAAGAAAAGATTTTCATG
382 CTTGTCTTATTCAGGGCATGAACATTGATTTTTAAGGATAATAGAGCAAAGAAAAGATTTCCAAG
* * * * *
47950 CAAAAGAAAATCATTAATGTCTTTTATCCTAATGAGGAG-TGTGTTTATAGTGCCTTTTTCGCAA
447 CAAAAGAAAATCATCAATGTCATTTACCCTAATGAGGAGATGTGTTTATAGTGCC-TTATCAC-A
* ** * * *
48014 AAAGAAAAAAGATCATTAATAGAATCCATGTTTGTCTTATTTCAGGCATGAACATAGACTTTAGA
510 AAAGAAAAAAGATCATTAATAGAATCCATGTTTGTCTCATTTCAGGCACAAACATAAACCTTACA
* *
48079 AAAATTGACGGGAAGAAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATTTATCCGA
575 AAAATTGACGGGAAGAAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATGTATCAGA
* *
48138 TTGA-AGAGAATGTATTTATGGTGCCTAATC
1 ATGAGA-AGAATGTATTTATAGTGCCTAATC
48168 CTGAAAAGAA
Statistics
Matches: 559, Mismatches: 96, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
633 113 0.20
634 125 0.22
635 46 0.08
636 7 0.01
637 189 0.34
638 78 0.14
639 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (633 bp):
ATGAGAAGAATGTATTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCAAGT
TTGTCACATTCAAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTCCTTACGA
AACCAAAACATCAATATCATGTATCCTAAGGACAAGACTACGTTTATAGTGCCTAATCCTGAAAA
AAATGGGGATTAGTATGAGTATTCATGCCTGTCTTATTTAAGAGACAAACTCTGATTCTATAAAA
AACAGTGGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGC
AATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAATGAGTGCTTGTCTTA
TTCAGGGCATGAACATTGATTTTTAAGGATAATAGAGCAAAGAAAAGATTTCCAAGCAAAAGAAA
ATCATCAATGTCATTTACCCTAATGAGGAGATGTGTTTATAGTGCCTTATCACAAAAGAAAAAAG
ATCATTAATAGAATCCATGTTTGTCTCATTTCAGGCACAAACATAAACCTTACAAAAATTGACGG
GAAGAAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATGTATCAGA
Found at i:48409 original size:471 final size:474
Alignment explanation
Indices: 47510--50033 Score: 3108
Period size: 471 Copynumber: 5.4 Consensus size: 474
47500 AATGCGAAGA
* * *
47510 ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCGTGTTTGTCACA-
1 ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCAT
* * * * ** **
47574 TTCGAGGTACGAACTTAGACTTTACAAAAATTGGTGGG-AGAAATGCCTTCCTTATGAAACCAAA
66 TTC-AGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAA-GCCTTTGTTGCGAAACCAAA
* * * * * * * **
47638 --ATATCAATTCGTGTATCCTAATGACA-AGAACT-TGTTTGTGGTGCCTATTCCTGAAAATTA-
129 GCATA-AAAATCATTTATCCGAATGA-AGAGAA-TGTGTTTATGGTGCCTAATCCTGAAAAGAAT
* ** *
47698 AGGTGATTAGTATGAGTATTCATGCCTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAC
191 AGG-GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
** * * *
47763 GGTGGGAAAAAAAGCTTTTCTCTTGCGACACCAAGGCGTCAATGTCATGTATCCTAATCTTGAAG
255 GGCAGGAAAAAAAGC-TTTC-CTTGCGACACCAAAGCATCAATGTCGTGTAT-CTAA---TGAAG
* * * *
47828 GCTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGTGACTGTTATAAGAATCGATGCTTGTCT
314 GCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGGATCGATGCTTGTCT
* * * * * * *
47893 TATTC-AGGGCATGAACATTGATTTTAAGGATAATAGAGCAAAGAAAAGATTTTC-ATGCAAAAG
379 TATTCAAGAG-ATGAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGA-TTTCGATGCAAAAG
* *
47956 AAAATCATTAATGTCTTTTATCCTAATGAGGAG
442 AAAATCATCAATGTCATTTATCCTAATGAGGAG
* * ** *
47989 -TGTGTTTATAGTGCCTTTTTCGCAAAAAGAAAAAAGATCATTAATAGAATCCATGTTTGTCTTA
1 ATGTGTTTATAGTGCC-TTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCA
* * *
48053 TTTCAGGCATGAACATAGACTTTAGAAAAATTGACGGGAAGAAAGCCTTTATTGCGAAACCAAAG
65 TTTCAGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * *
48118 CATAAAAATCATTTATCCGATTGAAGAGAATGTATTTATGGTGCCTAATCCTGAAAAGAATGGGG
130 CATAAAAATCATTTATCCGAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAGGG
* *
48183 ATTAGTGTGAGTATTCATGTTTGTCTTATTTTAGAGACCAA-TATTGATTCTATCAAAAACGGCA
195 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGCA
* * * **
48247 GGAAAAGAAGCTTCCCTTGCGACACCAAAGCATCAATGTCGTGTAT-T-A-GAAAGCAATGCATT
259 GGAAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTATCTAATGAAGGCAATGTGTT
* *
48309 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGGATCGATGCTAGTCTTATTCAACAG
324 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGGATCGATGCTTGTCTTATTCAAGAG
* *
48374 ATGAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGATTTCTATGCAAAAGGAAATCATCAAT
389 ATGAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGATTTCGATGCAAAAGAAAATCATCAAT
48439 GTCATTTATCCTAATGAGGAG
454 GTCATTTATCCTAATGAGGAG
* ** * *
48460 AATGTGTTTATAGTTCCCAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATCTCA
1 -ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCA
* * * * * *
48525 TTTGAGGCTTGAACATAGACTTTAAAAAAATTGTTGGGAAG-AAGCCTTTGTTGCAAAATCAAAG
65 TTTCAGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * * * * *
48589 CATCAATATC-TTGTATCCGAATGAAAAGACTATGTTTATGGTGCCTAGTCCTAAAAAGAATAGG
130 CATAAAAATCATT-TATCCGAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAGG
*
48653 GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGCA
194 GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCA
* * *
48718 GGAAAAAAAGCTTTCCTTGCGACACTAAAGCTTCAATGTCGTGTATCCTAACGAAGGCAATGTGT
259 GGAAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTAT-CTAATGAAGGCAATGTGT
* * * * *
48783 TTTGGCTTCCTAATCTTGAAAAGCATGGAGACTATTACGAGGATCGATGCTTGTCTTATTCAATA
323 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGGATCGATGCTTGTCTTATTCAAGA
* *
48848 GATGAACTTTCATGTTAAGGAAATTAGGGCAAAG--AA-A-----A-G-----G-AAATCATCAA
388 GATGAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGATTTCGATGCAAAAGAAAATCATCAA
*
48898 TGTCGTTTATCCTAATGAGGAG
453 TGTCATTTATCCTAATGAGGAG
* ** *
48920 AATGTGTTTATAGTGCCTAATCACATGAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTTA
1 -ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCA
* * *
48985 TTTCAGGCATGAACATAAACTTTATAAAAGTTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
65 TTTCAGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
49050 CATAAAAATCATTTATCC-AATTGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAGG
130 CATAAAAATCATTTATCCGAA-TGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAGG
* * * * * *
49114 GATTAGTGTGAGTATTCATGTTTGTTTTACTTAAAAGATAAACTTTGACTCTATCAAAAACGACA
194 GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCA
* * * *
49179 GGAAAAAAAGCTTTCCTTGCAACGCCAAAGCATCAATGTCGTGTATCCTAACGAATGCAA--TGT
259 GGAAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTAT-CTAATGAAGGCAATGTGT
* * *
49242 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGGATAGATGCTTGTCTTATTCAATA
323 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGGATCGATGCTTGTCTTATTCAAGA
* *
49307 GATGAACTTTCATGTTAAGGAAAATA-GATCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCA
388 GATGAACTTTCATGTTAAGGAAAATAGGGT-AAAGAAAAGATTTCGATGCAAAAGAAAATCATCA
*
49371 ATGTCATTTATCCTAAAGAGGAG
452 ATGTCATTTATCCTAATGAGGAG
* * * * ** * * *
49394 -TGTGTTTACAATGCCTTGTCACAAAAACAAAAAAGTTCATTAATATAATCCATGTTTGTCTTAT
1 ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCAT
* *
49458 TTCGGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACTAAAGC
66 TTCAGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAGC
* * *
49523 ATAAAAATCATTTATCCGACTAAAGAGAATGTGTTTATGGTGCTTAATCCTGAAAAGAAT-GGGA
131 ATAAAAATCATTTATCCGAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAGGGA
* *
49587 TTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGACAGG
196 TTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGG
* * *
49652 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAAGGCAATGTGTTT
261 AAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTAT-CTAATGAAGGCAATGTGTTT
* * *
49717 TGGCTTCCCAATTTTGAAAAGAATGGAGACTGTTACT-AGGATCGATGCTTGCCTTATTCAAGGG
325 TGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA-TGAGGATCGATGCTTGTCTTATTCAAGAG
* **
49781 ATGAGCTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGATTTCGATGCAAAAGAAAATTGTCAAT
389 ATGAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGATTTCGATGCAAAAGAAAATCATCAAT
* *
49846 GTCACTTATCCTAATAAGGAG
454 GTCATTTATCCTAATGAGGAG
*
49867 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
1 -ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCA
* * * * * * * * * *
49932 TTTGAGGCATGAACTTAGACTCTACAAAACTTGAGGGGAGGAAACCCTTTATAGCAAAACCAAAG
65 TTTCAGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * * *
49997 CATCAACATCATGTATCCTAATGAGGAGAATGTGTTT
130 CATAAAAATCATTTATCCGAATGAAGAGAATGTGTTT
50034 GTTGCACCTA
Statistics
Matches: 1774, Mismatches: 226, Indels: 94
0.85 0.11 0.04
Matches are distributed among these distances:
458 1 0.00
459 92 0.05
460 126 0.07
461 189 0.11
462 3 0.00
466 1 0.00
467 2 0.00
468 1 0.00
470 6 0.00
471 426 0.24
472 247 0.14
473 156 0.09
474 33 0.02
475 238 0.13
476 1 0.00
478 43 0.02
479 90 0.05
480 114 0.06
481 5 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (474 bp):
ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCTCAT
TTCAGGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAGC
ATAAAAATCATTTATCCGAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAGGGA
TTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGG
AAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTATCTAATGAAGGCAATGTGTTTT
GGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGGATCGATGCTTGTCTTATTCAAGAGAT
GAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGATTTCGATGCAAAAGAAAATCATCAATGT
CATTTATCCTAATGAGGAG
Found at i:49400 original size:932 final size:928
Alignment explanation
Indices: 47510--50033 Score: 3113
Period size: 932 Copynumber: 2.7 Consensus size: 928
47500 AATGCGAAGA
* *
47510 ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCGTGTTTGTCACAT
1 ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * ** **
47575 TCGAGG-TACGAACTTAGACTTTACAAAAATTGGTGGG-AGAAATGCCTTCCTTATGAAACCAAA
66 TTGAGGCT-TGAACATAGACTTTACAAAAATTGATGGGAAGAAA-GCCTTTGTTGCGAAA-CAAA
** * * * * * **
47638 ATATCAAT-TCGTGTATCCTAATGACAAGAACTTGTTTGTGGTGCCTATTCCTGAAAATTA-AGG
128 GCATCAATATCTTGTATCCGAATGAAAAG-ACTTGTTTATGGTGCCTAATCCTGAAAAGAATAGG
* ** * *
47701 TGATTAGTATGAGTATTCATGCCTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGT
192 -GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGC
* * * * *
47766 GGGAAAAAAAGCTTTTCTCTTGCGACACCAAGGCGTCAATGTCATGTATCCTAATCTTGAAGGCT
256 AGGAAAAAAAGC-TTTC-CTTGCGACACCAAAGCATCAATGTCGTGTATCCTAA-C--GAAGGCA
* * *
47831 ATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGTGACTGTTATAAGAATCGATGCTTGTCTTAT
316 ATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGGATCGATGCTTGTCTTAT
* * * *
47896 TC-AGGGCATGAACATTGATTTTAAGGATAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAA
381 TCAAGGG-ATGAACTTTCATGTTAAGGA-AATAGGGCAAAG--AA-A-----A-G-----G-AAA
* * * * **
47960 TCATTAATGTCTTTTATCCTAATGAGGAG--TGTGTTTATAGTGCCTTTTTCGCAAAAAGAAAAA
429 TCATCAATGTCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCC-TTATCACAAAAAGAATGA
*
48023 AGATCATTAATAGAATCCATGTTTGTCTTATTTCAGGCATGAACATAGACTTTAGAAAAATTGAC
493 AGATCATTAATAGAATCCATGTTTGTCTTATTTCAGGCATGAACATAGACTTTACAAAAATTGAC
* *
48088 GGGAAGAAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATTTATCCGATTGAAGAGAATGTAT
558 GGGAAGAAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATTTATCCAATTGAAGAGAATGTGT
* * * *
48153 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTTAGA
623 TTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTGTCTTACTTAAAA
* * * * *
48218 GACCAATATTGATTCTATCAAAAACGGCAGGAAAAGAAGCTTCCCTTGCGACACCAAAGCATCAA
688 GACAAATATTGACTCTATCAAAAACGACAGGAAAAAAAGCTTCCCTTGCAACACCAAAGCATCAA
*
48283 TGTCGTGTATTAGAAAGCAATGCATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
753 TGTCGTGTATTAGAAAGCAATG-ATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* *
48348 GGATCGATGCTAGTCTTATTCAACAGATGAACTTTCATGTTAAGGAAAATAGGGTAAAGAAAAGA
817 GGATAGATGCTAGTCTTATTCAACAGATGAACTTTCATGTTAAGGAAAATAGGATAAAGAAAAGA
* * *
48413 TTTCTATGCAAAAGGAAATCATCAATGTCATTTATCCTAATGAGGAG
882 TTTCGATGCAAAAGAAAATCATCAATGTCATTTATCCTAAAGAGGAG
* ** *
48460 AATGTGTTTATAGTTCCCAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATCTCA
1 -ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * *
48525 TTTGAGGCTTGAACATAGACTTTAAAAAAATTGTTGGGAAG-AAGCCTTTGTTGCAAAATCAAAG
65 TTTGAGGCTTGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAA-CAAAG
* *
48589 CATCAATATCTTGTATCCGAATGAAAAGACTATGTTTATGGTGCCTAGTCCTAAAAAGAATAGGG
129 CATCAATATCTTGTATCCGAATGAAAAGACT-TGTTTATGGTGCCTAATCCTGAAAAGAATAGGG
*
48654 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGCAG
193 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAG
* *
48719 GAAAAAAAGCTTTCCTTGCGACACTAAAGCTTCAATGTCGTGTATCCTAACGAAGGCAATGTGTT
258 GAAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGTT
* * * * **
48784 TTGGCTTCCTAATCTTGAAAAGCATGGAGACTATTACGAGGATCGATGCTTGTCTTATTCAATAG
323 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGGATCGATGCTTGTCTTATTCAAGGG
48849 ATGAACTTTCATGTTAAGGAAATTAGGGCAAAGAAAAGGAAATCATCAATGTCGTTTATCCTAAT
388 ATGAACTTTCATGTTAAGGAAA-TAGGGCAAAGAAAAGGAAATCATCAATGTCGTTTATCCTAAT
* **
48914 GAGGAGAATGTGTTTATAGTGCCTAATCACATGAAGAATGAAGATCATTAATAGAATCCATGTTT
452 GAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTT
* * * * *
48979 GTCTTATTTCAGGCATGAACATAAACTTTATAAAAGTTGATGGGAAGAAAGCCTTTGTTGCGAAA
517 GTCTTATTTCAGGCATGAACATAGACTTTACAAAAATTGACGGGAAGAAAGCCTTTATTGCGAAA
49044 CCAAAGCATAAAAATCATTTATCCAATTGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGA
582 CCAAAGCATAAAAATCATTTATCCAATTGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGA
* *
49109 ATAGGGATTAGTGTGAGTATTCATGTTTGTTTTACTTAAAAGATAAACT-TTGACTCTATCAAAA
647 ATAGGGATTAGTGTGAGTATTCATGTTTGTCTTACTTAAAAGACAAA-TATTGACTCTATCAAAA
* * *
49173 ACGACAGGAAAAAAAGCTTTCCTTGCAACGCCAAAGCATCAATGTCGTGTATCCTAACGAATGCA
711 ACGACAGGAAAAAAAGCTTCCCTTGCAACACCAAAGCATCAATGTCGTGTAT--T-A-GAAAGCA
*
49238 ATG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGGATAGATGCTTGTCTTATT
772 ATGATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGGATAGATGCTAGTCTTATT
* *
49302 CAATAGATGAACTTTCATGTTAAGGAAAATA-GATCAAGGAAAAGATTTCGATGCAAAAGAAAAT
837 CAACAGATGAACTTTCATGTTAAGGAAAATAGGAT-AAAGAAAAGATTTCGATGCAAAAGAAAAT
49366 CATCAATGTCATTTATCCTAAAGAGGAG
901 CATCAATGTCATTTATCCTAAAGAGGAG
* * * * ** * * * *
49394 -TGTGTTTACAATGCCTTGTCACAAAAACAAAAAAGTTCATTAATATAATCCATGTTTGTCTTAT
1 ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
*
49458 TTCG-GGCATGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACTAAAG
66 TT-GAGGCTTGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAAC-AAAG
* * * * *
49522 CATAAAAATCATT-TATCCGACT-AAAGAGAATGTGTTTATGGTGCTTAATCCTGAAAAGAAT-G
129 CATCAATATC-TTGTATCCGAATGAAA-AGACT-TGTTTATGGTGCCTAATCCTGAAAAGAATAG
* *
49584 GGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGAC
191 GGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGC
* * * *
49649 AGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAAGGCAATGTG
256 AGGAAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTG
* * *
49714 TTTTGGCTTCCCAATTTTGAAAAGAATGGAGACTGTTACTAGGATCGATGCTTGCCTTATTCAAG
321 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGGATCGATGCTTGTCTTATTCAAG
* * **
49779 GGATGAGCTTTCATGTTAAGGAAAATAGGGTAAAGAAAA-GATTTCGATGCAAAAGAAAATTGTC
386 GGATGAACTTTCATGTTAAGG-AAATAGGGCAAAGAAAAGGAAATC-AT-C-------AA-TGTC
*
49843 AATGTCACTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCA
440 ---GT---TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCA
* * * * * * * *
49908 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAACTTGAGGGGAGG
499 TTAATAGAATCCATGTTTGTCTTATTTCAGGCATGAACATAGACTTTACAAAAATTGACGGGAAG
* * * * * * *
49973 AAACCCTTTATAGCAAAACCAAAGCATCAACATCATGTATCCTAA-TGAGGAGAATGTGTTT
564 AAAGCCTTTATTGCGAAACCAAAGCATAAAAATCATTTATCC-AATTGAAGAGAATGTGTTT
50034 GTTGCACCTA
Statistics
Matches: 1375, Mismatches: 160, Indels: 80
0.85 0.10 0.05
Matches are distributed among these distances:
931 34 0.02
932 563 0.41
933 89 0.06
934 144 0.10
935 1 0.00
936 9 0.01
937 1 0.00
938 1 0.00
940 2 0.00
941 4 0.00
943 1 0.00
944 4 0.00
945 2 0.00
946 92 0.07
947 160 0.12
948 3 0.00
949 32 0.02
950 27 0.02
951 200 0.15
952 6 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (928 bp):
ATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
TTGAGGCTTGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACAAAGCA
TCAATATCTTGTATCCGAATGAAAAGACTTGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATT
AGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGGAA
AAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGTTTTG
GCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGGATCGATGCTTGTCTTATTCAAGGGATG
AACTTTCATGTTAAGGAAATAGGGCAAAGAAAAGGAAATCATCAATGTCGTTTATCCTAATGAGG
AGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAATAGAATCCATGTTTGTCT
TATTTCAGGCATGAACATAGACTTTACAAAAATTGACGGGAAGAAAGCCTTTATTGCGAAACCAA
AGCATAAAAATCATTTATCCAATTGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAG
GGATTAGTGTGAGTATTCATGTTTGTCTTACTTAAAAGACAAATATTGACTCTATCAAAAACGAC
AGGAAAAAAAGCTTCCCTTGCAACACCAAAGCATCAATGTCGTGTATTAGAAAGCAATGATTTTG
GCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGGATAGATGCTAGTCTTATTCAACAGATG
AACTTTCATGTTAAGGAAAATAGGATAAAGAAAAGATTTCGATGCAAAAGAAAATCATCAATGTC
ATTTATCCTAAAGAGGAG
Found at i:51468 original size:475 final size:472
Alignment explanation
Indices: 50005--54460 Score: 2509
Period size: 475 Copynumber: 9.4 Consensus size: 472
49995 AGCATCAACA
* * * * *
50005 TCATGTATCCTAATGAGGAGAATGTGTTTGTTGCACCTAATCACAAAATGAATGAAGATCATTAG
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTA-
* * * * * * *
50070 C-AGAA-CCTATGTTTGT-TGCATTCAAAGCTCAAACTTAGGCTTTACAAAAATTGGTAGGAA-A
65 CTAGAATCC-ATGTTTGTCT-CATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGA
* * ** * * * *
50131 AATACCTTTCTTGCGAAACCAAAATATCAATATCGTGTATCCTAATGAGATGACTTCGTTTATGG
128 AA-GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAATT-GTTTATGG
* * * * * * *
50196 T-CCTTATTCTTGAAAATAAGGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAA
191 TGCC-TAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGACAA
* ** * * *
50260 ACTTTGATTCTATAAAAAACGGTG-GAAAGAAAAGCTACTCTTGCGACACCAAGGCATCAATGCC
255 ACTTTGATTCTATCAAAAACGGTGAGAAA-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
* * * * * *
50324 TTGTATCCTAATGAAAGCTATGTGTTTTGGCTTCCCAATCTAGAAAGGAATGGAGATTGTTACGA
319 GTGTATCCTAATGAAGGCAATGTG-TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* ** * * *
50389 GAATCGATGCTTGTCTTATTCAAGGGATGAACCTTGATTTTAAGGATAATACGGCAAAGAAAATA
383 GAATCGATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTTAA-GAAAATAGGGCAAAGAAAAGA
*
50454 TTTCCATGCAAAAGAAAAGCATCAATG
447 TTTCCATGC-AAAGAAAATCATCAATG
* ** * *
50481 TCATTTATCCTAATGAGGA-AATTGTGTTTATAGCGTCTTTTCCCAAAAAGAAAGAAGATCATTA
1 TCATTTATCCTAATGAGGAGAA-TGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTA
*
50545 CTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAG
65 CTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAA
* * *
50610 GCCTTTGTTGCGAAACCAAGCAAAGCATCAAAATTGTTTATCCA-AATGAAG-AGAATGTGTTTA
130 GCCTTTGTTGCGAAA-C---CAAAGCATCAATATCGTGTAT-CATAAT-AAGAAGAAT-TGTTTA
* * *
50673 TGGTGCCCAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTAGTGTTTGTCTTATTTAAGAGAC
188 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGAC
* *
50738 AAACTTTAATTCTACCAAAAACGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGT
253 AAACTTTGATTCTATCAAAAACGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGT
* * * * * *
50803 CGTGTATCCTAATGAAGGTAATGTGTTTAGGCTTTCAAATCTTGAAAAGAAAGGAGACTATTATG
318 CGTGTATCCTAATGAAGGCAATGTGTTT-GGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * * *
50868 AGGATCGATGCTTGTCTTATTCAAGGGATGAACGTTCATGTTAAGTAAAATAGGGCAAAGAAATG
382 AGAATCGATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTTAAG-AAAATAGGGCAAAGAAAAG
* * **
50933 ATTTTCATGCAAAAAAAATCATCAACA
446 ATTTCCATGCAAAGAAAATCATCAATG
* * * * * *
50960 TCATTTATCTTAAAGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAAAGAAGGAAGATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTAC
** * * * * *
51025 TAGAATCTGTGTTTATCTCATTTGAGGCACGAACTTAGAGTTTAAAAAAATTGGTGGGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAG
* * *
51090 CCTTTTTTGTGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAGTATGTTTATGGTGCC
131 CCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAAT-TGTTTATGGTGCC
* * *
51155 TAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTTTCTTATTTAAAAGATAAACTTT
195 TAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGACAAACTTT
*
51220 GATTCTATCAAAAACGGCGAG-AAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCGTGTAT
260 GATTCTATCAAAAACGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCGTGTAT
*
51284 CCTAATGAAGGCAATGTGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCG
325 CCTAATGAAGGCAATGTG-TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
* * * * *
51349 AAGCCTGTCTTATTCACGAGATGAACTTTCAAGTTGAAGAAAATAGGGCAAAGAAAAGATTTCCA
389 ATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTT-AAGAAAATAGGGCAAAGAAAAGATTTCCA
*
51414 TGCAAAGGAAAATCGTCAATG
453 TGCAAA-GAAAATCATCAATG
* * * *
51435 TTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAATAGAATGAAGATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTAC
* *
51500 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAG
66 TAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAG
* * * * * *
51565 CCTTTGTTGCGAAACCAAAGCATCAACATTGTGTATCCTAATGAGGAA-AATGTGTTTGTTGTGC
131 CCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAAT-AAGAAGAAT-TGTTTATGGTGC
* * * ** * * * * * * * ** * * *
51629 CTAATCATGAAATGAAAGATGATCACGAGT-AGAATCCATATTTTTCGCATTCAA-AGCTCGAAC
194 CTAATCCTGAAAAGAATGGGGATTA-GTGTGAGTATTCGTGTTTGTCTTATTTAAGAG-ACAAAC
* * * *** * * * * * *** * *
51692 TTAGGCTT-TA-CAAAAATTAGG-G-GGGTAAATGCCTTTCTTGCGAAACAAAAATTTTAATATC
257 TT-TGATTCTATCAAAAA--CGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
** * * * * * *
51753 GTGTATCCTAATGAGACGGCTTTGT-TTATAG-TGCCAAATCTGGAAAAAAATGG-GA-AGTAAT
319 GTGTATCCTAATGA-A-GGCAATGTGTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACTGT--T
* * * * * * ** * *
51814 ATGAGTATTC-ATGTTTGCCTTATTTAAGAGG--CAACCTTTGATTCTATAAAAAATAAGGG-AA
379 ACGAG-AATCGATGCTTGTCTTATTCAAG-GGATGAACCTTCAAGT-TA-AGAAAAT-AGGGCAA
* * * * ** *
51875 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
439 AGAAAAGATTTCCATGC-AAAGAAAATCATCAATG
* * * * * * *** * * *
51910 TCGTGTATCCTAATGAAGAGAATGTGTTT-TGGCTTCCCAATCTTGAAAATAATGGAGA-CTGTT
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGC-GCCTAATCACAAAAAGAATGAAGATC-ATT
* * * * ** * * **
51973 ACGAGAATCGATGCTTT-TCTTATTTAATGG-ATGAACTTTTATTTTA-AGGAAAATAGCA--CA
64 ACTAGAATCCATG-TTTGTCTCATTTAA-GGCACGAACTTAGACTTTACA--AAAATTG-ATGGG
** * ** * * * * * * *
52033 AAGAAAAGATTTTGATGC-AAAAAAAATCATCAATATCGTTTGTCCTAGTGAGGAGAATTTGTTT
124 AAG-AAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAA-TTGTTT
* * * * ** * * * * * * * *
52097 ATAGTGCCTTATCAC-AAAAAGAGTGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-
187 ATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGT-GTGAGTATTCGTGTTTGTCTTATTTAAGA
* * * * * ** * *
52159 GCACAAACTTAGACTT-TA-CAAAAATTGGTGAG-AAGAAAGCCTTTATTGTGAGACCAAAGGAT
250 G-ACAAACTTTGA-TTCTATCAAAAA-CGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCAT
* * * * * * * ** *** *
52221 CAATATCGTGTATCATAATG-CGGAGAATATGTTTATAGC-ACCTTATCACAAAAAGAATGAAGA
312 CAATGTCGTGTATCCTAATGAAGG-CAATGTG-TT-TGGCTTCCCAATCTTGAAAAGAATGGAGA
* * * * * ** ** * * * * *
52284 -TCATTGCTAGAATCCATGTTTGTCGCATTTGAGGCACGAA-CTT-AGACTTTTCAA-AAATTGG
374 CT-GTTACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACCTTCA-A--GTT-AAGAAAATAG
* * * * * * * *
52345 TGGGAAA-AATA-CTTTTCTTGCGAAACCAAAA-AATCAATA
434 -GGCAAAGAAAAGATTTCCATGC-AAA-GAAAATCATCAATG
* * * * * * ** * ** * ** * *
52384 TCGTGTATCCTAATGAGAAGACT-TCATTTATGGTTCCTATTTC-TTAAAATAA-GGGGATTAGT
1 TCATTTATCCTAATGAGGAGAATGT-GTTTATAGCGCCTA-ATCACAAAAAGAATGAAGATCATT
* * * * * * * ** * **
52446 A-TGAGAATTCTTGTTTGTTTTATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAACGGTGAAAA
64 ACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTAGACTT-TACAAAAATTGATGGGAA
* ** * * * * * * *
52508 GAAAAGCTTTTCATGCGACACCAAGGCGTCAATGTCATGTATCCTAAT--GAAGGCTATGTGTTT
126 G-AAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAA-G-AAT-TGTTT
* * * * * * * * * *
52571 -TGGCTTCCCAATCTTGAAAAGAATGGAGACT-GT-T-ACTAGAATCGATGCTTGTTTTATTCAA
187 ATGG-TGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGT--ATTCG-TGTTTGTCTTATTTAA
* ** * ** * * * * * ** *
52632 GGGATGAACTTTGATTTTAAGGATAATAA-GG-CA-AAGAAAAGATTTCCTTGCAGA-AGAAAAT
248 GAGACAAACTTTGATTCT-ATCA-AA-AACGGTGAGAAAAAAAGCTTTTCTTAC-GACACCAAAG
* * * * * *** * * *
52693 CATCAATGTCATTTATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTTTTCATGAAAAGAAAGA
309 CATCAATGTCGTGTATCCTAATGAAGG-CAATGTG-TT-TGGCTTCCCAATCTTGAAAAGAATGG
* * * * ** * * * ** **
52756 AGA-TCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACATAGACTTTACA-AAAATTG
371 AGACT-GTTACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTTA-AGAAAA-T-
* ** * ** * **
52819 ATGGG--AAG-AAAGCCTTT-GTTACGAAA-CTAATGCGTCAACA
432 A-GGGCAAAGAAAAG-ATTTCCATGC-AAAGAAAAT-CATCAATG
* * * * * * * * *
52859 TCGTGTATCCTAATAAGGAAAATGTGTTTATTGTGCCTAATCACAAAATGAATGAATATCATTAG
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTAC
* * * * * *
52924 TGGAATCCATGTTTGTCACGTTTGAA-GCCCGAACTTAGGCTTTGCAAAAATT-AGTGGGAA-AA
66 TAGAATCCATGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTACAAAAATTGA-TGGGAAGAA
* * * ** ** * * * * * * *
52986 ATGCCATTCTTGCAAAAGAAAAATATTAATATCATGTATCCTAATGAGAAGACTTTGATTATAGT
129 A-GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGA-ATTGTTTATGGT
* * * * * * * * * * *
53051 GCCAAATCCTTAAAAAAATGGGTAGTAGTATGAGTATTCATGTTTGCCTTGTTTTAGAGGCAAAC
192 GCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGACAAAC
* * * *
53116 TTTGATTCTATAAAAAACGAG-G-GAAAGAAAAGCCTTTCTTGCAACACCAAAGCATCAAT-TCG
257 TTTGATTCTATCAAAAACG-GTGAGAAA-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCG
* *
53178 TGTATCCGAATGAAGAG-AATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
320 TGTATCCTAATGAAG-GCAATGTG-TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * * * * * * ** *
53242 GAATTGATGCTTATCTTATTTAACGGATAAACTTTGATTTTAAGGAAAATAGGGCAACGAAAAGA
383 GAATCGATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTTAA-GAAAATAGGGCAAAGAAAAGA
* *
53307 TTTCCATGCAAAAGAAAATCATCAGTA
447 TTTCCATGC-AAAGAAAATCATCAATG
* * *
53334 TCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTAC
* * * * *
53399 TAGAATCCATGTTTGACTCATTTGAGGGATGAAATTAGACTTTACAAAAATTGATGGGAAGAAAG
66 TAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAG
* * * * * * *
53464 CCTTTGTTGGGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTACGGTGCC
131 CCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAAT-TGTTTATGGTGCC
* * *** *
53529 TAATCCTGAAAAGAATGGGGATTAGGGTGAGTTTTCACATTTGTCTCATTTAAGAG--AAACTTT
195 TAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
53592 GATTCTATCAAAAACGG-AAAAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCGATGTCGTGTA
260 GATTCTATCAAAAACGGTGAGAAA-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCGTGTA
* * ** * * * *
53656 TCCTAATGAAGAGTAAGTGTTTTTGG-TTCTTAATCTTGAAAGGAATAGAGACTATTACGAAAAT
324 TCCTAATGAAG-GCAA-TGTGTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAAT
* * * * ** * *
53720 TGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGACAAATATGGCAAAGAAAAGATTTT
387 CGATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTTAAGA-AAATAGGGCAAAGAAAAGATTTC
* * *
53785 CACGCTAAAAAAAATCATCAATA
451 CATGC-AAAGAAAATCATCAATG
* * *
53808 TCA-TTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAA-AATGAAGATTATTAC
1 TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTAC
* * * * *
53871 TAGAATCCATGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACAACAATTGGTGGGAATAAAG
66 TAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAG
* * * * * * * *
53936 CCTTTGTTCCGAAACCAAAGCATTAATATTGTGTATCTTAATGAGAAGACTACGTTTATGGTTCC
131 CCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAAT-TGTTTATGGTGCC
* * ** *
54001 TAATCCTGAAAAGAATGAGGATTAGTATGAGTATTTATGCTTGTCTTATTTAAGAGACAAACTTT
195 TAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGACAAACTTT
** * * * *
54066 GATTCTATCAAAAACGACGAGAAGAAAAGCTTTTTTTGCGACACCAAAGCACCAATGTCGTGTAT
260 GATTCTATCAAAAACGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCGTGTAT
* * ** * *
54131 CCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCCCGAAACGAATGGAGACTGTTTA-GAGAATT
325 CCTAATGAAGGCAATGTG-TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG-TTACGAGAATC
* * * * *
54195 GATGCTTATCTTTTTCAAAGAATGAA-C-T----TT--GAATAATTGGGCAAAGAAAAGATTTCC
388 GATGCTTGTCTTATTCAAGGGATGAACCTTCAAGTTAAGAA-AATAGGGCAAAGAAAAGATTTCC
* *
54252 ATGCAAAAGAAAATCTTTAATG
452 ATGC-AAAGAAAATCATCAATG
* * * * * *
54274 TTAGTTATCCTAATGTA-GAGAATGTGTTTATAGTGCCTTATCACTAAAAGAATGAAGATCGTTA
1 TCATTTATCCTAATG-AGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTA
* * * * *
54338 CTAGAATCCATGTTTG-CTGCATTTGAGGTATGAACTTAGATTTTACAAAAATTGGTGGGAAGAA
65 CTAGAATCCATGTTTGTCT-CATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAA
* * * * *
54402 AACCTTTGTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTT
129 AGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAAT-TGTTT
54461 GTAGTGCCAA
Statistics
Matches: 3111, Mismatches: 705, Indels: 336
0.75 0.17 0.08
Matches are distributed among these distances:
465 1 0.00
466 40 0.01
467 42 0.01
468 120 0.04
471 2 0.00
472 199 0.06
473 182 0.06
474 662 0.21
475 1193 0.38
476 239 0.08
477 30 0.01
478 5 0.00
479 140 0.05
480 246 0.08
481 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (472 bp):
TCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAATGAAGATCATTAC
TAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAG
CCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAATTGTTTATGGTGCCT
AATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTG
ATTCTATCAAAAACGGTGAGAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCGTGTATC
CTAATGAAGGCAATGTGTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
GCTTGTCTTATTCAAGGGATGAACCTTCAAGTTAAGAAAATAGGGCAAAGAAAAGATTTCCATGC
AAAGAAAATCATCAATG
Found at i:51653 original size:158 final size:158
Alignment explanation
Indices: 49852--56353 Score: 1349
Period size: 158 Copynumber: 41.1 Consensus size: 158
49842 CAATGTCACT
* * ** * *
49852 TATCCTAATAAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * * ** *
49917 TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAACTTGAGGGGAGGAAACCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* * * * *
49982 ATAGCAAAACCAAAGCATCAACATCATG
131 CTTGCGAAACCAAAGCATCAATATCGTG
* * ** ** *
50010 TATCCTAATGAGGAGAATGTGTTTGTTGCACCTAATCACAAAATGAATGAAGATCATTAGC-AGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTA-CTAGA
** * * * * * *
50074 A-CCTATGTTTGT-TGCATTCAAAGCTCAAACTTAGGCTTTACAAAAATTGGTAGGAAAAATA-C
65 ATCC-ATGTTTGTCT-CATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAA-AGC
**
50136 CTTTCTTGCGAAACCAAAATATCAATATCGTG
127 CTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * ** * *
50168 TATCCTAATGA-GATGACT-TCGTTTATGGT-CCTTATTCTTGAAAAT-AAGGGGGATTAGTA-T
1 TATCCTAATGAGGA-GAATGT-GTTTATAGTGCC-TAATCATG-AAATGAAAGAAGATCATTACT
* * * * * * * * ** * *
50228 GAGTATTCATATTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAACGGTGGAAAGAA
62 -AGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TACAAAAATTGATGGGAA-AA
* * * ** *
50291 AAG-CTACTCTTGCGACACCAAGGCATCAATGCCTTG
123 AAGCCT-TTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * ** *
50327 TATCCTAATGA-AAGCTATGTGTTT-TGGCTTCCCAATC-TAGAAAGGAATGGAGATTGTTACGA
1 TATCCTAATGAGGAG-AATGTGTTTATAG-TGCCTAATCAT-GAAATGAAAGAAGATCATTACTA
* * * ** * * * * * *
50389 GAATCGATGCTTGTCTTATTCAAGGGATGAACCTT-GATTTTA-AGGATAA-T-ACGGCAAAGAA
63 GAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTACA--AAAATTGATGGGAAA-AA
*** * * ** * * *
50450 AATATTTCCATGCAAAAGAAAAGCATCAATGTCATT
124 AGCCTTT-CTTGCGAAACCAAAGCATCAATATCGTG
* * ** *** *
50486 TATCCTAATGAGGA-AATTGTGTTTATAGCGTCTTTTCCCAAAAAGAAAGAAGATCATTACTAGA
1 TATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGA
* * *
50550 ATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAGGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTT
* * * *
50615 TGTTGCGAAACCAAGCAAAGCATCAAAATTGTT
130 TCTTGCGAAA-C---CAAAGCATCAATATCGTG
* * * * * * * * ** * * * *
50648 TATCCAAATGAAGAGAATGTGTTTATGGTGCCCAATCCTAAAAAGAATGGGGATTAGT-GTGAGT
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACT-AGA
* * * * * * *
50712 AT-TAGTGTTTGTCTTATTTAAGAG-ACAAACTTTA-A-TTCTACCAAAAA-CGGTGAGAAAAAA
65 ATCCA-TGTTTGTCTCATTTGAG-GCACGAAC-TTAGACTT-TA-CAAAAATTGATG-GGAAAAA
* * * *
50772 AGCTTTTCTTACGACACCAAAGCATCAATGTCGTG
124 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * ** * * * *
50807 TATCCTAATGAAGG-TAATGTGTTTA-GGCTTTCAAATCTTGAAAAGAAAGGAGA-CTATTA-TG
1 TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACT-
* * * * ** * * *
50868 AGGATCGATGCTTGTCTTATTCAAGGGATGAACGTT-CA-TGTTA-AGTAAAA-T-A-GGGCAAA
62 AGAATCCATGTTTGTCTCATTTGAGGCACGAAC-TTAGACT-TTACA--AAAATTGATGGG-AAA
** * ** * * * *
50927 GAAATGATTTTCATGC-AAAAAAAATCATCAACATCATT
122 -AAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * *** * *
50965 TATCTTAAAGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAAAGAAGGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
** * * * * *
51030 TCTGTGTTTATCTCATTTGAGGCACGAACTTAGAGTTTAAAAAAATTGGTGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* *
51095 TTTGTGAAACCAAAGCATCAATATCGTG
131 CTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * * ** * * * *
51123 TATCATAATAAGAAGAGTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT-GTGAGT
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACT-AGA
* * * * * * ** * * ** *
51187 ATTCGTGTTTTTCTTATTTAAAAG-ATAAACTTTGA-TTCTATCAAAAA-CGGCGAGAAAAAAGC
65 ATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACTT-TA-CAAAAATTGATGGGAAAAAAGC
* * * *
51249 TTTTCTTACGACACCAAAGCATCAATGTCGTG
127 CTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * * * *
51281 TATCCTAATGAAGG-CAATGTGCTT-TGGCTTCCCAATCTTGAAAAGAATGGAGA-CTGTTACAA
1 TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACTA
* * ** * * * * *
51343 GAATCGAAGCCTGTCTTA-TTCACGAG-ATGAACTTTCA-AGTTGA-AGAAAA-T-A-GGGCAAA
63 GAATCCATGTTTGTCTCATTTGA-G-GCACGAAC-TT-AGACTTTACA-AAAATTGATGGG--AA
* * ** * * * ** *
51401 GAAAAG-ATTTCCATGC-AAAGGAAAATCGTCAATGTTATT
121 -AAAAGCCTTT-CTTGCGAAA-CCAAAGCATCAATATCGTG
* * *
51440 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCA-CAAATAGAATGAAGATCATTACTAGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAT-GAAAGAAGATCATTACTAGA
51504 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTT
* * *
51569 TGTTGCGAAACCAAAGCATCAACATTGTG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
* * * * ** *
51598 TATCCTAATGAGGAAAATGTGTTTGTTGTGCCTAATCATGAAATGAAAGATGATCACGAGTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * ** * * * * ** *
51663 TCCATATTTTTCGCATTCAAAGCTCGAACTTAGGCTTTACAAAAATT-AGGGGGGTAAATGCCTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGA-TGGGAAAAAAGCCTT
* *** *
51727 TCTTGCGAAACAAAAATTTTAATATCGTG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
** * * * *
51756 TATCCTAATGA-GACGGCTTTGTTTATAGTGCCAAATC-TGGAAA-AAAATGGGAAG-T-AATA-
1 TATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCAT-GAAATGAAA---GAAGATCATTAC
* * * * * * * * *
51815 TGAGTATTCATGTTTGCCTTATTTAAGAGGCA--ACCTTTGA-TTCTATAAAAAAT-AAGGGAAA
61 T-AGAATCCATGTTTGTCTCATTT--GAGGCACGAACTTAGACTT-TACAAAAATTGATGGG-AA
* * *
51876 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTG
121 -AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * *
51915 TATCCTAATGAAGAGAATGTGTTT-TGGCTTCCCAATCTTGAAAAT-AATGGAGA-CTGTTACGA
1 TATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCATG-AAATGAAAGAAGATC-ATTACTA
* * * * ** * * **
51977 GAATCGATGCTTT-TCTTATTTAATGG-ATGAACTTTTATTTTA-AGGAAAATAGCA--CAAAGA
63 GAATCCATG-TTTGTCTCATTTGA-GGCACGAACTTAGACTTTACA--AAAATTG-ATGGGAA-A
** ** ** * *
52037 AAAGATTTTGATGC-AAAAAAAATCATCAATATCGTT
122 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * ** * **
52073 TGTCCTAGTGAGGAGAATTTGTTTATAGTGCCTTATCACAAAAAGAGTGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * *
52138 TCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* * * *
52203 ATTGTGAGACCAAAGGATCAATATCGTG
131 CTTGCGAAACCAAAGCATCAATATCGTG
* * * ** * ** * * *
52231 TATCATAATGCGGAGAATATGTTTATAGCACCTTATCACAAAAAGAATGAAGATCATTGCTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * *
52296 TCCATGTTTGTCGCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATA-CTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAA-AGCCTT
**
52360 TCTTGCGAAACCAAAAAATCAATATCGTG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * ** * *
52389 TATCCTAATGAGAAGACT-TCATTTATGGTTCCTATTTCTTAAAAT--AAGGGGATTAGTA-TGA
1 TATCCTAATGAGGAGAATGT-GTTTATAGTGCCTA-ATCATGAAATGAAAGAAGATCATTACT-A
* * * * * * * * ** * **
52450 GAATTCTTGTTTGTTTTATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAACGGTGAAAAGAAAA
63 GAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TACAAAAATTGATGGGAA-AAAA
* * * * * * *
52513 GCTTTTCATGCGACACCAAGGCGTCAATGTCATG
125 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
** * * * * * * * *
52547 TATCCTAATGAAGG-CTATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGA-CTGTTACTA
1 TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACTA
* * * * ** * * * * * * *
52609 GAATCGATGCTTGTTTTATTCAAGGGATGAACTTTGATTTTA-AGGATAA-T-AAGGCAAAGAAA
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA--AAAATTGATGG-GAA-AAA
* * * * *
52671 AG-ATTTCCTTGCAGAAGA--AAATCATCAATGTCATT
124 AGCCTTT-CTTGC-GAA-ACCAAAGCATCAATATCGTG
** *
52706 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTTTCATGAAAAGAAAGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * *
52771 TCCATGTTTGTCTTATTTGAGGCACGAACATAGACTTTACAAAAATTGATGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* * * * * *
52836 GTTACGAAACTAATGCGTCAACATCGTG
131 CTTGCGAAACCAAAGCATCAATATCGTG
* * * ** * * * *
52864 TATCCTAATAAGGAAAATGTGTTTATTGTGCCTAATCACAAAATGAATGAATATCATTAGTGGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * * * * * *
52929 TCCATGTTTGTCACGTTTGAAGCCCGAACTTAGGCTTTGCAAAAATT-AGTGGGAAAAATGCCAT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGA-TGGGAAAAAAGCCTT
* ** ** * *
52993 TCTTGCAAAAGAAAAATATTAATATCATG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * * *
53022 TATCCTAATGAGAAGACTTTGATTATAGTGCCAAATCCTTAAA-AAAATG-GGTAGT-AGTA-TG
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAA-GAAG-A-TCATTACT-
* * * ** * * **
53083 AGTATTCATGTTTGCCTTGTTTTAGAGGCA--AACTTTGA-TTCTATAAAAAACGA-GGGAAAGA
62 AGAATCCATGTTTGTC-TCATTT-GAGGCACGAACTTAGACTT-TACAAAAATTGATGGG-AA-A
53144 AAAGCCTTTCTTGC-AACACCAAAGCATCAAT-TCGTG
122 AAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTG
* * * * * * * * * * * *
53180 TATCCGAATGAAGAGAATATGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGA-CTGTTACGAG
1 TATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACTAG
** * * * * ** * *
53243 AATTGATGCTTATCTTATTTAACGG-ATAAACTTTGATTTTA-AGGAAAA-T-A-GGGCAACGAA
64 AATCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACA--AAAATTGATGGG-AA--AA
* * * ** * * * *
53303 AAG-ATTTCCATGCAAAAGAAAATCATCAGTATCATT
123 AAGCCTTT-CTTGCGAAACCAAAGCATCAATATCGTG
* * ** * *
53339 TATCCTAGTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * * *
53404 TCCATGTTTGACTCATTTGAGGGATGAAATTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* * * *
53469 GTTGGGAAACTAAAGCATCAATATCATG
131 CTTGCGAAACCAAAGCATCAATATCGTG
* * * ** * * * ** * *** *
53497 TATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATGGGGATTA-GGGTGAGT
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACT-AGA
* * ** * * ** ***
53561 TTTCACATTTGTCTCATTT-AAG-A-GAAACTTTGA-TTCTATCAAAAACGGA-AAAAAGAAAAG
65 ATCCATGTTTGTCTCATTTGAGGCACG-AACTTAGACTT-TA-CAAAAATTGATGGGAA-AAAAG
* * *
53621 CTTTTCTTGC-AACACCAAAGCATCGATGTCGTG
126 CCTTTCTTGCGAA-ACCAAAGCATCAATATCGTG
* * * * * * * *
53654 TATCCTAATGAAGAGTAA-GTGTTTTTGGTTCTTAATCTTGAAAGGAATAG-AGA-CTATTACGA
1 TATCCTAATGAGGAG-AATGTGTTTATAGTGCCTAATCATGAAATGAA-AGAAGATC-ATTACTA
* ** * * * * * * * *
53716 AAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGACAAA-T-ATGGCAAAGAAA
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-A-AAATTGATGG-GAA-AAA
** ** * ** * *
53778 AGATTTTCACGCTAAAAAAAATCATCAATATCAT-
124 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * *
53812 TATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAA-AAAATGAAGATTATTACTAGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAA-GAAGATCATTACTAGA
* * * *
53875 ATCCATGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACAACAATTGGTGGGAATAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTT
* * * *
53940 TGTTCCGAAACCAAAGCATTAATATTGTG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
* * * ** * * * * * * * * *
53969 TATCTTAATGAGAAGACTACGTTTATGGTTCCTAATCCTGAAAAGAATGAGGATTAGTA-TGAGT
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACT-AGA
** * * * * * * * *
54033 ATTTATGCTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CGACGAGAAGAAAAG
65 ATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGATGGGAA-AAAAG
* * * * *
54095 CTTTTTTTGCGACACCAAAGCACCAATGTCGTG
126 CCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * ** * * * ** *
54128 TATCCTAACGAAGG-GAATGTGTTT-TGGCTTCCCAATCCCGAAACGAATGGAGACTGTTTA-GA
1 TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGA-TCATTACTA
** * * * * * * * * *
54190 GAATTGATGCTTATCT-TTTTCA---AAGAA-TGA-ACTTT-GAATAATTG--GGCAAAGAAAAG
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGG-GAA-AAAAG
* * * ** * * * * *
54246 -ATTTCCATGCAAAAGAAAATCTTTAATGTTAGT-
126 CCTTT-CTTGCGAAACCAAAGCATCAAT-ATCGTG
* * * *
54279 TATCCTAATGTA-GAGAATGTGTTTATAGTGCCTTATCACT-AAAAGAATGAAGATCGTTACTAG
1 TATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCA-TGAAATGAAAGAAGATCATTACTAG
* * * *
54342 AATCCATGTTTG-CTGCATTTGAGGTATGAACTTAGATTTTACAAAAATTGGTGGGAAGAAAA-C
64 AATCCATGTTTGTCT-CATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAA-AAAAGC
* * *
54405 CTTTGTTGTGAAACCAAAGCATCAATATCATG
127 CTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * *** * *
54437 TATCCTAATGAGAAGAATGTGTTTGTAGTGCCAAATCGCAAAATGAATGAAGATCATTAGTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
** * * * * * * *
54502 TATAAGTTTGTCACATTTGAGGCATGAATTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* ** *
54567 CTTGCAAAACCAAAATATCAATATCGTT
131 CTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * ** * *
54595 TATCCTAATGAGAAGACT-TCGTTTATGGTGCCTAATCTTGAAAAGAAGGGGGATTAGTA-TGAG
1 TATCCTAATGAGGAGAATGT-GTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACT-AG
* * * * * * * * * * *
54658 TATTCACGTTTGTCTTATTTAAAAG-ACAAACTTTA-A-TTCTATAAAAAATGGTGGAAAAAGAA
64 AATCCATGTTTGTCTCATTT-GAGGCACGAAC-TTAGACTT-TACAAAAATTGATGGGAAAA-AA
* * * * * *
54720 GCTTTTCTTGCGACACTAAGGCATCAATGTCATG
125 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * * * * *
54754 TATCCTAACGCAGG-CAATGTGTTT-TGGATTCCCAATCTTGAAAAGAATGGAGA-CTGTTACAA
1 TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACTA
* * ** * ** * * * * * *
54816 GAATCGATGCTTGAGTTATTCAAGGGATGAACTTTGA-ATTAAAGAAAACT-A-GGGCAAAGAAA
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAATTGATGGG--AA-AAA
* * * ** * * * *
54878 AG-ATTTCCATGCAAAAGAAAATCATCAATGTCATT
124 AGCCTTT-CTTGCGAAACCAAAGCATCAATATCGTG
* * * ** * * * *
54913 TATCCTAAGGAGGGGAATGT-TTCTACAGTGCCTAATCACAAAAAGAATGAAGATAATTACTGGA
1 TATCCTAATGAGGAGAATGTGTT-TATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGA
* ** * * * *
54977 ATTCATGTTTGTCTCATTTGAGGCATTAACTTAGACTATAAAAAAATTGGTGGGAAGAAAGCCTT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTT
* * * *
55042 TGTTGCAAAATCAAAGCATCAAAATCGTG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * ** * * *
55071 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA-TGAGT
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACT-AGA
** * * * * * * **
55135 ATTGATGTTTGTCTTATTTAAGAG-ACAAACTTTGAATCTATC-AAAACCGATGGGAAGAAAAG-
65 ATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTGATGGGAA-AAAAGC
* * * *
55197 CTTTTTTAC-AACACCAAAGCGTCAATGTCGTG
127 CTTTCTTGCGAA-ACCAAAGCATCAATATCGTG
* * * * * * * * * * * * *
55229 AATCCTAACGAAGG-CATTGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGA-CTATTGCGA
1 TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACTA
** * ** * * ** * * ** ****
55291 GAATCCATGCCTGTCTTATTCAAGGGATGAACTTTCACATTGAGGAAAATAGGGCAAAAAAAAAA
63 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTA-CAAAA-ATTG-ATGGGAAAAA
* * * * ** * * * *
55356 AG-ATTTCCATCCAAAAGAAAATCGTCAATGTCGTT
124 AGCCTTT-CTTGCGAAACCAAAGCATCAATATCGTG
* * * * *
55391 TATCCTAATGAGGAGAATGTGTTTTTAATGCCATACCTCA--AAAAGAATGAAGATCATTACTAG
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCC-TA-ATCATGAAATGAAAGAAGATCATTACTAG
* * * * * *
55454 AATCCATGTTTGTCTTATTTGAGGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAGCGT
64 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCT
* * * *
55519 TTGTTGCAAAACCAAAGCATCAACATTGTG
129 TTCTTGCGAAACCAAAGCATCAATATCGTG
* * *
55549 TATCCTAATGAGGAGAATGTGTTT-T-GTTGCACCTAATC-TCAAAATGAATGAAGATCATTAGT
1 TATCCTAATGAGGAGAATGTGTTTATAG-TG--CCTAATCAT-GAAATGAAAGAAGATCATTACT
* * * * * * *
55611 AGAACCCATGTTTGTCGCATTCGAAGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAAAATA-
62 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAA-AG
** *
55675 CCTTTCTTGCGAAACCAAAATATCAATATTGTG
126 CCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * ** * *
55708 TATCCTAATGAGAAGACTTTGTTTATGGTGCCTATTCTTGAAA-AAAAGGGGGATTAGTA-TGAG
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAA-GAAGATCATTACT-AG
** * * * * * * * * *
55771 AATTAATGATTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAAG
64 AATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TACAAAAATTGATGGGAA-AAAAG
* * * * ** ** *
55834 CTTTTCTTAC-AATGCCAAGGTGTCAATGCCTTG
126 CCTTTCTTGCGAA-ACCAAAGCATCAATATCGTG
** ** * * * * * * * * *
55867 TATCCTAACAAAGG-CTATGTGTTT-TGGCTTCCCAATCTTAAAAAGAATGGAGA-CTATTACGA
1 TATCCTAA-TGAGGAGAATGTGTTTATAG-TGCCTAATCATGAAATGAAAGAAGATC-ATTACTA
** * * * * * * * *
55929 GAATTGATGCTTATCTTATTTAACGG-ATGAACTTTGATTTTA-AGAAAA-T-A-GCGCAAAGCA
63 GAATCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACA-AAAATTGATG-GGAAA--A
** * * ** * * *
55989 AAGATTTTCATGCAAAAGAAAATCATCAATATCATT
123 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * ** * * *
56025 TATCCTAGTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAGAGAAGATCATTACTACAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * * * *
56090 TCCATGTTTGTCTCATTTGAGGCATGAACTTATAGTTTACAAATATTGAGGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
* *
56155 CTTTGCGAAACCAAAGCATCAACATTGTG
131 C-TTGCGAAACCAAAGCATCAATATCGTG
* * * * * ** ** * *
56184 TATACTATTAAAGAGAATGTGTTTATTGCACCTAATCACAAAATGAATGAAGATCATTAGTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
* * * * * * * * *
56249 CCCATATTTCTCGCATTCGAAGCTCGAACTTAGGCTTTACAAAAATTGGTGGGAAAAATA-CCTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAA-AGCCTT
** *
56313 TCTTGCGAAACCAAAATATAAATATCGTG
130 TCTTGCGAAACCAAAGCATCAATATCGTG
56342 TATCCTAATGAG
1 TATCCTAATGAG
56354 AAGACTTCGT
Statistics
Matches: 4546, Mismatches: 1432, Indels: 732
0.68 0.21 0.11
Matches are distributed among these distances:
150 11 0.00
151 71 0.02
152 10 0.00
153 2 0.00
154 3 0.00
155 11 0.00
156 55 0.01
157 386 0.08
158 2178 0.48
159 1448 0.32
160 130 0.03
161 32 0.01
162 174 0.04
163 33 0.01
164 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTT
CTTGCGAAACCAAAGCATCAATATCGTG
Found at i:53530 original size:633 final size:633
Alignment explanation
Indices: 50952--53533 Score: 3112
Period size: 633 Copynumber: 4.1 Consensus size: 633
50942 CAAAAAAAAT
* * * * * * * * * * * *
50952 CATCAACATCATTTATCTTAAAGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAAAGAAGGAAG
1 CATCAACATCGTGTATCCTAATGAGGAAAATATGTTTATTGTGCCTAATCACAAAATGAATGAAT
* ** * * * * *
51017 ATCATTACTAGAATCTGTGTTTATCTCATTTGAGGCACGAACTTAGAG-TTTAAAAAAATTGGTG
66 ATCATTAGTAGAATCCATGTTTGTCGCATTTGAAGCACGAACTTAG-GCTTTACAAAAATTAGTG
* ** * ** * * * * * *
51081 GGAAGAAA-GCCTTTTTTGTGAAACCAAAGCATCAATATCGTGTATCATAATAAGAAGAGTATGT
130 GGAA-AAATGCCTTTCTTGCAAAACAAAAATATTAATATCGTGTATCCTAATGAGAAGACTTTGA
* * * * * * ** *
51145 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCGTGTTTTTCTTATTTAAAA
194 TTATAGTGCCAAATCCTGAAAAAAATGGGGAGTAGTATGAGTATTCATGTTTGCCTTATTTAAGA
* * * *
51210 GATAAACTTTGATTCTATCAAAAACGGCGAGAA-AAAAGCTTTTCTTACGACACCAAAGCATCAA
259 GACAAACTTTGATTCTATAAAAAACGGGGA-AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
51274 TGTCGTGTATCCTAATGAAGGCAATGTGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
323 TGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * * *
51339 ACAAGAATCGAAGCCTGTCTTA-TTCACGAGATGAACTTTCAAGTTGAA-GAAAATAGGGCAAAG
388 ACGAGAATCGATGCTTGTCTTATTTAACG-GATGAACTTT-GATTTTAAGGAAAATAGGGCAAAG
* * * *
51402 AAAAGATTTCCATGCAAAGGAAAATCGTCAATGTTATTTATCCTAATGAGGAGAATGTGTTTATA
451 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
*
51467 GTGCCTTATCACAAATAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
516 GTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *
51532 ACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTGTTGCGAAACCAAAG
581 AATTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * ** *
51585 CATCAACATTGTGTATCCTAATGAGGAAAATGTGTTTGTTGTGCCTAATCATGAAATGAAAG-AT
1 CATCAACATCGTGTATCCTAATGAGGAAAATATGTTTATTGTGCCTAATCACAAAATGAATGAAT
** * * ** * *
51649 GATCACGAGTAGAATCCATATTTTTCGCATTCAAAGCTCGAACTTAGGCTTTACAAAAATTAGGG
66 -ATCATTAGTAGAATCCATGTTTGTCGCATTTGAAGCACGAACTTAGGCTTTACAAAAATTAGTG
** * * * * *
51714 GGGTAAATGCCTTTCTTGCGAAACAAAAATTTTAATATCGTGTATCCTAATGAGACGGCTTTGTT
130 GGAAAAATGCCTTTCTTGCAAAACAAAAATATTAATATCGTGTATCCTAATGAGAAGACTTTGAT
* *
51779 TATAGTGCCAAAT-CTGGAAAAAAATGGGAAGTAATATGAGTATTCATGTTTGCCTTATTTAAGA
195 TATAGTGCCAAATCCT-GAAAAAAATGGGGAGTAGTATGAGTATTCATGTTTGCCTTATTTAAGA
* * **
51843 GGCAACCTTTGATTCTATAAAAAATAAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
259 GACAAACTTTGATTCTATAAAAAA-CGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
51908 TGTCGTGTATCCTAATGAAGAG-AATGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGT
323 TGTCGTGTATCCTAATGAAG-GCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * **
51972 TACGAGAATCGATGCTTTTCTTATTTAATGGATGAACTTTTATTTTAAGGAAAATAGCACAAAGA
387 TACGAGAATCGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
** * * * *
52037 AAAGATTTTGATGCAAAA-AAAATCATCAATATCGTTTGTCCTAGTGAGGAGAATTTGTTTATAG
452 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
*
52101 TGCCTTATCACAAAAAGAGTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AA
517 TGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * * *
52165 ACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATTGTGAGACCAAAG
582 A-TTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * * * * ** * * *
52218 GATCAATATCGTGTATCATAATGCGGAGAATATGTTTATAGCACCTTATCACAAAAAGAATGAAG
1 CATCAACATCGTGTATCCTAATGAGGAAAATATGTTTATTGTGCCTAATCACAAAATGAATGAAT
* * * *
52283 ATCATT-GCTAGAATCCATGTTTGTCGCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTG
66 ATCATTAG-TAGAATCCATGTTTGTCGCATTTGAAGCACGAACTTAGGCTTTACAAAAATTAGTG
* * * * *
52347 GGAAAAATACTTTTCTTGCGAAACCAAAAA-ATCAATATCGTGTATCCTAATGAGAAGAC-TTCA
130 GGAAAAATGCCTTTCTTGC-AAAACAAAAATATTAATATCGTGTATCCTAATGAGAAGACTTTGA
* * * * * * * * * * **
52410 TTTATGGTTCCTATTTCTTAAAATAA-GGGGATTAGTATGAGAATTCTTGTTTGTTTTATTTAAG
194 -TTATAGTGCCAAATCCTGAAAAAAATGGGGAGTAGTATGAGTATTCATGTTTGCCTTATTTAAG
* * * *
52474 AGACAAACTTTGATTCTATAAAAAACGGTGAAAAGAAAAGCTTTTCATGCGACACCAAGGCGTCA
258 AGACAAACTTTGATTCTATAAAAAACGG-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
52539 ATGTCATGTATCCTAATGAAGGCTATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT
322 ATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * * *
52604 TACTAGAATCGATGCTTGTTTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAAGGCAAAGA
387 TACGAGAATCGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
52669 AAAGATTTCCTTGCAGAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAG
452 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* ** * *
52734 TGCCTTTTCATGAAAAGAAAGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAA
517 TGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * *
52799 CA-TAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTACGAAACTAATG
582 -ATTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * *
52851 CGTCAACATCGTGTATCCTAATAAGGAAAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAT
1 CATCAACATCGTGTATCCTAATGAGGAAAATATGTTTATTGTGCCTAATCACAAAATGAATGAAT
* * * * *
52916 ATCATTAGTGGAATCCATGTTTGTCACGTTTGAAGCCCGAACTTAGGCTTTGCAAAAATTAGTGG
66 ATCATTAGTAGAATCCATGTTTGTCGCATTTGAAGCACGAACTTAGGCTTTACAAAAATTAGTGG
* * *
52981 GAAAAATGCCATTCTTGCAAAAGAAAAATATTAATATCATGTATCCTAATGAGAAGACTTTGATT
131 GAAAAATGCCTTTCTTGCAAAACAAAAATATTAATATCGTGTATCCTAATGAGAAGACTTTGATT
* * * * *
53046 ATAGTGCCAAATCCTTAAAAAAATGGGTAGTAGTATGAGTATTCATGTTTGCCTTGTTTTAGAGG
196 ATAGTGCCAAATCCTGAAAAAAATGGGGAGTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGA
* *
53111 CAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCCTTTCTTGCAACACCAAAGCATCAAT-
261 CAAACTTTGATTCTATAAAAAACG-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* *
53175 TCGTGTATCCGAATGAAGAG-AATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
325 TCGTGTATCCTAATGAAG-GCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * *
53239 CGAGAATTGATGCTTATCTTATTTAACGGATAAACTTTGATTTTAAGGAAAATAGGGCAACGAAA
389 CGAGAATCGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* *
53304 AGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTG
454 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
53369 CCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGACTCATTTGAGGGATGAAAT
519 CCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAAT
* *
53434 TAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGGGAAACTAAAG
584 TAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * **
53484 CATCAATATCATGTATCCTAATGA-GAAGACTATGTTTACGGTGCCTAATC
1 CATCAACATCGTGTATCCTAATGAGGAA-AATATGTTTATTGTGCCTAATC
53534 CTGAAAAGAA
Statistics
Matches: 1638, Mismatches: 283, Indels: 56
0.83 0.14 0.03
Matches are distributed among these distances:
631 2 0.00
632 239 0.15
633 1133 0.69
634 257 0.16
635 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (633 bp):
CATCAACATCGTGTATCCTAATGAGGAAAATATGTTTATTGTGCCTAATCACAAAATGAATGAAT
ATCATTAGTAGAATCCATGTTTGTCGCATTTGAAGCACGAACTTAGGCTTTACAAAAATTAGTGG
GAAAAATGCCTTTCTTGCAAAACAAAAATATTAATATCGTGTATCCTAATGAGAAGACTTTGATT
ATAGTGCCAAATCCTGAAAAAAATGGGGAGTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGA
CAAACTTTGATTCTATAAAAAACGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
AGAATCGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAATTA
GACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
Found at i:55268 original size:634 final size:625
Alignment explanation
Indices: 53800--55280 Score: 1422
Period size: 626 Copynumber: 2.4 Consensus size: 625
53790 TAAAAAAAAT
* * * * * * *
53800 CATCAATATCAT-TATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AAATGAAG
1 CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGCAAAATGAATG-AG
** * ** * * * * * * ** *
53863 ATTATTACTAGAATCCATGTTTGTCTCATTTGAGGA-ACGAACTTAGACTTTACAACAATTGGTG
65 AGCATTAGTAGAATATAAGTTTGTCACATTTGA-GACA-GAATTTAGAATCTACAAAAACCGATG
* * * * * * * * * * * *
53927 GGAATAAAGCCTTTGTTCCGAAACCAAAGCATTAATATTGTGTATCTTAATGAGAAGACTACGT-
128 AGAAAAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGACTTCGTG
* * * * * *
53991 TTATGGTTCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTTATGCTTGTCTTATTTAAGA
193 TTTTGGTTCCTAATCTTGAAAAGAAGGAGGATTAGTATGAGTATTCACGCTTGTCTTATTTAAAA
* * * *
54056 GACAAACTTTGATTCTATCAAAAACGACGAGAAGAAAAGCTTTTTTTGCGACACCAAAGCACCAA
258 GACAAACTTTAATTCTATAAAAAACGACGAGAAAAAAAGCTTTTCTTGCGACACCAAAGCACCAA
* * * *
54121 TGTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCCCGAAACGAATGGAGACTGTT
323 TGTCATGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCCCGAAAAGAATGGAGACTGTT
* * * *
54186 TAGAGAATTGATGCTTATCTTTTTCAAAGAATGAACTTTGAATAATTGGGCAAAGAAAAGATTTC
388 TAAAGAATCGATGCTTATCTTATTCAAAGAATGAACTTTGAATAATAGGGCAAAGAAAAGATTTC
* * * * * *
54251 CATGCAAAAGAAAATCTTTAATGTTAGTTATCCTAATGTAGAGAATGTGTTTATAGTGCCTTATC
453 CATGCAAAAGAAAATCATCAATGTCAGTTATCCTAATGGAGAGAATGTGTTTACAGTGCCTAATC
* ** * * *
54316 ACTAAAAGAATGAAGATCGTTACTAGAATCCATGTTTGCTGCATTTGAGGTATGAACTTAGATTT
518 ACAAAAAGAATGAAGATAATTACTAGAATCCATGTTTGCTGCATTTGAGGCATGAACTTAGACTA
* **
54381 TACAAAAATTGGTGGGAAGAAAACCTTTGTTGTGAAACCAAAG
583 TAAAAAAATTGGTGGGAAGAAAACCTTTGTTGCAAAACCAAAG
* * *
54424 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTGTAGTGCCAAATCGCAAAATGAATGAAG
1 CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGCAAAATGAATG-AG
* * * * ** *
54489 ATCATTAGTAGAATATAAGTTTGTCACATTTGAGGCATGAATTTAGACTTTACAAAAATTGGTGA
65 AGCATTAGTAGAATATAAGTTTGTCACATTTGAGACA-GAATTTAGAATCTACAAAAACCGATGA
* * * ** *
54554 GAAAAATGCCTTTCTTGCAAAACCAAAATATCAATATCGTTTATCCTAATGAGAAGACTTCGT-T
129 GAAAAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGACTTCGTGT
* * * *
54618 TATGGTGCCTAATCTTGAAAAGAAGGGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAAAAG
194 TTTGGTTCCTAATCTTGAAAAGAAGGAGGATTAGTATGAGTATTCACGCTTGTCTTATTTAAAAG
* ** * * *
54683 ACAAACTTTAATTCTATAAAAAATGGTG-GAAAAAGAAGCTTTTCTTGCGACACTAAGGCATCAA
259 ACAAACTTTAATTCTATAAAAAACGACGAGAAAAA-AAGCTTTTCTTGCGACACCAAAGCACCAA
* **
54747 TGTCATGTATCCTAACGCAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTG-T
323 TGTCATGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCCCGAAAAGAATGGAGACTGTT
* * *
54811 TACAAGAATCGATGCTTGA-GTTATTCAAGGGATGAACTTTGAATTAAAGAAAACTAGGGCAAAG
388 TA-AAGAATCGATGCTT-ATCTTATTCAAAGAATGAACTTTGAA-T------AA-TAGGGCAAAG
* *
54875 AAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAA-GGAGGGGAATGT-TTCTA
443 AAAAGATTTCCATGCAAAAGAAAATCATCAATGTCAGTTATCCTAATGGA-GAGAATGTGTT-TA
* *
54938 CAGTGCCTAATCACAAAAAGAATGAAGATAATTACTGGAATTCATGTTTGTCT-CATTTGAGGCA
506 CAGTGCCTAATCACAAAAAGAATGAAGATAATTACTAGAATCCATGTTTG-CTGCATTTGAGGCA
* * *
55002 TTAACTTAGACTATAAAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAG
570 TGAACTTAGACTATAAAAAAATTGGTGGGAAGAAAACCTTTGTTGCAAAACCAAAG
* * * *
55058 CATCAAAATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATG-
1 CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGC--AAAATGAATGA
* * * **
55120 G-GGATTAGTATGAGTATTGATGTTTGTCTTATTTAAGAGACA-AACTTT-GAATCTATC-AAAA
64 GAGCATTAGTA-GAATA-T-AAGTTTGTCACATTT--GAGACAGAA-TTTAGAATCTA-CAAAAA
* * * * * * *
55181 CCGATGGGAAGAAAAG-CTTTTTTACAACACCAAAGCGTCAATGTCGTGAATCCTAAC--GAAGG
122 CCGATGAGAA-AAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGA
*
55243 CATT-GTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAG
186 C-TTCGTGTTTTGG-TTCCTAATCTTGAAAAGAA-GGAG
55281 ACTATTGCGA
Statistics
Matches: 707, Mismatches: 119, Indels: 51
0.81 0.14 0.06
Matches are distributed among these distances:
624 12 0.02
625 47 0.07
626 304 0.43
627 2 0.00
631 7 0.01
632 12 0.02
633 15 0.02
634 286 0.40
635 17 0.02
636 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (625 bp):
CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGCAAAATGAATGAGA
GCATTAGTAGAATATAAGTTTGTCACATTTGAGACAGAATTTAGAATCTACAAAAACCGATGAGA
AAAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGACTTCGTGTTT
TGGTTCCTAATCTTGAAAAGAAGGAGGATTAGTATGAGTATTCACGCTTGTCTTATTTAAAAGAC
AAACTTTAATTCTATAAAAAACGACGAGAAAAAAAGCTTTTCTTGCGACACCAAAGCACCAATGT
CATGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCCCGAAAAGAATGGAGACTGTTTAA
AGAATCGATGCTTATCTTATTCAAAGAATGAACTTTGAATAATAGGGCAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATGTCAGTTATCCTAATGGAGAGAATGTGTTTACAGTGCCTAATCACA
AAAAGAATGAAGATAATTACTAGAATCCATGTTTGCTGCATTTGAGGCATGAACTTAGACTATAA
AAAAATTGGTGGGAAGAAAACCTTTGTTGCAAAACCAAAG
Found at i:55308 original size:634 final size:624
Alignment explanation
Indices: 53800--55310 Score: 1363
Period size: 634 Copynumber: 2.4 Consensus size: 624
53790 TAAAAAAAAT
* * * * * * *
53800 CATCAATATCAT-TATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AAATGAAG
1 CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGCAAAATGAATG-AG
** * ** * * * * * * ** *
53863 ATTATTACTAGAATCCATGTTTGTCTCATTTGAGGA-ACGAACTTAGACTTTACAACAATTGGTG
65 AGCATTAGTAGAATATAAGTTTGTCACATTTGA-GACA-GAATTTAGAATCTACAAAAACCGATG
* * * * * * * * * * * *
53927 GGAATAAAGCCTTTGTTCCGAAACCAAAGCATTAATATTGTGTATCTTAATGAGAAGACTACGTT
128 AGAAAAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGACTTCGTT
* * * * * * * ** *
53992 TATGGTTCCTAATCCTGAAAAGAA-TGAGGATTAGTATGAGTATTTATGCTTGTCTTATTTAAGA
193 TATGGTGCCCAATCTTGAAAAGAAGGGA-GACTAGTACGAGAATCCATGCTTGTCTTATTTAAAA
* * * *
54056 GACAAACTTTGATTCTATCAAAAACGACGAGAAGAAAAGCTTTTTTTGCGACACCAAAGCACCAA
257 GACAAACTTTAATTCTATAAAAAACGACGAGAAAAAAAGCTTTTCTTGCGACACCAAAGCACCAA
* * * *
54121 TGTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCCCGAAACGAATGGAGACTGTT
322 TGTCATGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCCCGAAAAGAATGGAGACTGTT
* * * *
54186 TAGAGAATTGATGCTTATCTTTTTCAAAGAATGAACTTTGAATAATTGGGCAAAGAAAAGATTTC
387 TAAAGAATCGATGCTTATCTTATTCAAAGAATGAACTTTGAATAATAGGGCAAAGAAAAGATTTC
* * * * * *
54251 CATGCAAAAGAAAATCTTTAATGTTAGTTATCCTAATGTAGAGAATGTGTTTATAGTGCCTTATC
452 CATGCAAAAGAAAATCATCAATGTCAGTTATCCTAATGGAGAGAATGTGTTTACAGTGCCTAATC
* ** * * *
54316 ACTAAAAGAATGAAGATCGTTACTAGAATCCATGTTTGCTGCATTTGAGGTATGAACTTAGATTT
517 ACAAAAAGAATGAAGATAATTACTAGAATCCATGTTTGCTGCATTTGAGGCATGAACTTAGACTA
* **
54381 TACAAAAATTGGTGGGAAGAAAACCTTTGTTGTGAAACCAAAG
582 TAAAAAAATTGGTGGGAAGAAAACCTTTGTTGCAAAACCAAAG
* * *
54424 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTGTAGTGCCAAATCGCAAAATGAATGAAG
1 CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGCAAAATGAATG-AG
* * * * ** *
54489 ATCATTAGTAGAATATAAGTTTGTCACATTTGAGGCATGAATTTAGACTTTACAAAAATTGGTGA
65 AGCATTAGTAGAATATAAGTTTGTCACATTTGAGACA-GAATTTAGAATCTACAAAAACCGATGA
* * * ** *
54554 GAAAAATGCCTTTCTTGCAAAACCAAAATATCAATATCGTTTATCCTAATGAGAAGACTTCGTTT
129 GAAAAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGACTTCGTTT
* * * * * * * *
54619 ATGGTGCCTAATCTTGAAAAGAAGGGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAAAAGA
194 ATGGTGCCCAATCTTGAAAAGAAGGGAGACTAGTACGAGAATCCATGCTTGTCTTATTTAAAAGA
* ** * * *
54684 CAAACTTTAATTCTATAAAAAATGGTG-GAAAAAGAAGCTTTTCTTGCGACACTAAGGCATCAAT
259 CAAACTTTAATTCTATAAAAAACGACGAGAAAAA-AAGCTTTTCTTGCGACACCAAAGCACCAAT
* **
54748 GTCATGTATCCTAACGCAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTG-TT
323 GTCATGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCCCGAAAAGAATGGAGACTGTTT
* * *
54812 ACAAGAATCGATGCTTGA-GTTATTCAAGGGATGAACTTTGAATTAAAGAAAACTAGGGCAAAGA
388 A-AAGAATCGATGCTT-ATCTTATTCAAAGAATGAACTTTGAA-T------AA-TAGGGCAAAGA
* *
54876 AAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAA-GGAGGGGAATGT-TTCTAC
443 AAAGATTTCCATGCAAAAGAAAATCATCAATGTCAGTTATCCTAATGGA-GAGAATGTGTT-TAC
* *
54939 AGTGCCTAATCACAAAAAGAATGAAGATAATTACTGGAATTCATGTTTGTCT-CATTTGAGGCAT
506 AGTGCCTAATCACAAAAAGAATGAAGATAATTACTAGAATCCATGTTTG-CTGCATTTGAGGCAT
* * *
55003 TAACTTAGACTATAAAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAG
570 GAACTTAGACTATAAAAAAATTGGTGGGAAGAAAACCTTTGTTGCAAAACCAAAG
* * * *
55058 CATCAAAATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATG-
1 CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGC--AAAATGAATGA
* * * **
55120 G-GGATTAGTATGAGTATTGATGTTTGTCTTATTTAAGAGACA-AACTTT-GAATCTATC-AAAA
64 GAGCATTAGTA-GAATA-T-AAGTTTGTCACATTT--GAGACAGAA-TTTAGAATCTA-CAAAAA
* * * * * * *
55181 CCGATGGGAAGAAAAG-CTTTTTTACAACACCAAAGCGTCAATGTCGTGAATCCTAAC--GAAGG
122 CCGATGAGAA-AAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGA
* * * * * *
55243 CATT-GTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTGCGAGAATCCATGCCTGTCT
186 C-TTCGT-TTATGG-TGCCCAATCTTGAAAAGAAGGGAGACTAGTACGAGAATCCATGCTTGTCT
55307 TATT
248 TATT
55311 CAAGGGATGA
Statistics
Matches: 727, Mismatches: 129, Indels: 52
0.80 0.14 0.06
Matches are distributed among these distances:
624 12 0.02
625 47 0.06
626 302 0.42
627 3 0.00
631 7 0.01
632 12 0.02
633 15 0.02
634 310 0.43
635 14 0.02
636 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (624 bp):
CATCAAAATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCAAATCGCAAAATGAATGAGA
GCATTAGTAGAATATAAGTTTGTCACATTTGAGACAGAATTTAGAATCTACAAAAACCGATGAGA
AAAAAGCCTTTCTTACAAAACCAAAACATCAATATCGTGAATCCTAACGAGAAGACTTCGTTTAT
GGTGCCCAATCTTGAAAAGAAGGGAGACTAGTACGAGAATCCATGCTTGTCTTATTTAAAAGACA
AACTTTAATTCTATAAAAAACGACGAGAAAAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTC
ATGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCCCGAAAAGAATGGAGACTGTTTAAA
GAATCGATGCTTATCTTATTCAAAGAATGAACTTTGAATAATAGGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATGTCAGTTATCCTAATGGAGAGAATGTGTTTACAGTGCCTAATCACAA
AAAGAATGAAGATAATTACTAGAATCCATGTTTGCTGCATTTGAGGCATGAACTTAGACTATAAA
AAAATTGGTGGGAAGAAAACCTTTGTTGCAAAACCAAAG
Found at i:55524 original size:478 final size:476
Alignment explanation
Indices: 54424--55560 Score: 1457
Period size: 476 Copynumber: 2.4 Consensus size: 476
54414 GAAACCAAAG
* * * * * * * *
54424 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTGTAGTGCCAAATCGCAAAATGAATGAAG
1 CATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTCTAATGCCATATCACAAAAAGAATGAAG
* * * * * *
54489 ATCATTAGTAGAATATAAGTTTGTCACATTTGAGGCATGAATTTAGACTTTACAAAAATTGGTGA
66 ATCATTACTAGAATACATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* ** * *
54554 GAA-AAATGCCTTTCTTGCAAAACCAAAATATCAATATCGTTTATCCTAATGAGAAGACTTCGTT
131 GAAGAAA-GCCTTTGTTGCAAAACCAAAGCATCAAAATCGTGTATCCTAATGAGAAGACTTCGTT
*
54618 TATGGTGCCTAATCTTGAAAAGAAGGGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAAAAG
195 TATGGTGCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAAAAG
* * * * * *
54683 ACAAACTTTAATTCTATAAAAAATGGTGGAAAAAGAAGCTTTTCTTGCGACACTAAGGCATCAAT
260 ACAAACTTTAATTCTATAAAAAACGATGGAAAAAGAAGCTTTTCTTACAACACCAAAGCATCAAT
* * *
54748 GTCATGTATCCTAACGCAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTGTTA
325 GTCATGAATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTATTA
* * * * *
54813 CAAGAATCGATGCTTGAGTTATTCAAGGGATGAACTTTGAATTAAAGAAAACTAGGGCAAAGAAA
390 CAAGAATCCATGCCTGACTTATTCAAGGGATGAACTTTCAATTAAAGAAAACTAGGGCAAAAAAA
*
54878 AGATTTCCATGCAAAAGAAAAT
455 AGATTTCCATCCAAAAGAAAAT
* *
54900 CATCAATGTCATTTATCCTAAGGAGGGGAA--TGTTTCTACAGTGCC-TAATCACAAAAAGAATG
1 CATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTCTA-A-TGCCAT-ATCACAAAAAGAATG
* * * * * *
54962 AAGATAATTACTGGAATTCATGTTTGTCTCATTTGAGGCATTAACTTAGACTATAAAAAAATTGG
63 AAGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
*
55027 TGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAAAATCGTGTATCCTAATGAGAAGACTAT-
128 TGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAAAATCGTGTATCCTAATGAGAAGACT-TC
* * *
55091 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTGATGTTTGTCTTATTTAA
192 GTTTATGGTGCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAA
* * * * *
55156 GAGACAAACTTTGAA-TCTATCAAAACCGATGGGAAGAA-AAGCTTTT-TTACAACACCAAAGCG
257 AAGACAAACTTT-AATTCTATAAAAAACGAT-GGAAAAAGAAGCTTTTCTTACAACACCAAAGCA
* * *
55218 TCAATGTCGTGAATCCTAACGAAGGCATTGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC
320 TCAATGTCATGAATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGAC
* * * * *
55283 TATTGCGAGAATCCATGCCTGTCTTATTCAAGGGATGAACTTTCACATTGAGGAAAA-TAGGGCA
385 TATTACAAGAATCCATGCCTGACTTATTCAAGGGATGAACTTTCA-ATTAAAGAAAACTAGGGC-
55347 AAAAAAAAAAGATTTCCATCCAAAAGAAAAT
448 --AAAAAAAAGATTTCCATCCAAAAGAAAAT
* * * * *
55378 CGTCAATGTCGTTTATCCTAATGAGGAGAATGTGTTTTTAATGCCATACCTCAAAAAGAATGAAG
1 CATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTCTAATGCCATATCACAAAAAGAATGAAG
* * *
55443 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACGTAGACTTTACAAAAATTGAG-G
66 ATCATTACTAGAATACATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG-GTG
* * *
55507 GGAAGAAAGCGTTTGTTGCAAAACCAAAGCATCAACATTGTGTATCCTAATGAG
130 GGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAAAATCGTGTATCCTAATGAG
55561 GAGAATGTGT
Statistics
Matches: 567, Mismatches: 79, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
474 7 0.01
475 114 0.20
476 247 0.44
477 12 0.02
478 177 0.31
479 3 0.01
480 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (476 bp):
CATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTCTAATGCCATATCACAAAAAGAATGAAG
ATCATTACTAGAATACATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
GAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAAAATCGTGTATCCTAATGAGAAGACTTCGTTT
ATGGTGCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAAAAGA
CAAACTTTAATTCTATAAAAAACGATGGAAAAAGAAGCTTTTCTTACAACACCAAAGCATCAATG
TCATGAATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAATGGAGACTATTAC
AAGAATCCATGCCTGACTTATTCAAGGGATGAACTTTCAATTAAAGAAAACTAGGGCAAAAAAAA
GATTTCCATCCAAAAGAAAAT
Found at i:55716 original size:159 final size:157
Alignment explanation
Indices: 55391--55719 Score: 405
Period size: 159 Copynumber: 2.1 Consensus size: 157
55381 CAATGTCGTT
55391 TATCCTAATGAGGAGAATGTGTTTTTAATGCCATACCTCAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTTT-ATGCCATACCTCAAAAAGAATGAAGATCATTACTAGAA
* ** * * * *
55456 TCCATGTTTGTCTTATTTGAGGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAGCGTTT
65 CCCATGTTTGTCGCATTCGAAGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAACCTTT
* *
55521 GTTGCAAAACCAAAGCATCAACATTGTG
130 CTTGCAAAACCAAAACATCAACATTGTG
* * * *
55549 TATCCTAATGAGGAGAATGTGTTTTGT-TGCACCTAATCTCAAAATGAATGAAGATCATTAGTAG
1 TATCCTAATGAGGAGAATGTGTTTT-TATGC-CAT-ACCTCAAAAAGAATGAAGATCATTACTAG
* *
55613 AACCCATGTTTGTCGCATTCGAAGC-TCGAACTTAGGCTTTACAAAAATTG-GTGGGAA-AAATA
63 AACCCATGTTTGTCGCATTCGAAGCAT-GAACGTAGACTTTACAAAAATTGAG-GGGAAGAAA-A
* * *
55675 CCTTTCTTGCGAAACCAAAATATCAATATTGTG
125 CCTTTCTTGCAAAACCAAAACATCAACATTGTG
55708 TATCCTAATGAG
1 TATCCTAATGAG
55720 AAGACTTTGT
Statistics
Matches: 147, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
157 3 0.02
158 32 0.22
159 112 0.76
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (157 bp):
TATCCTAATGAGGAGAATGTGTTTTTATGCCATACCTCAAAAAGAATGAAGATCATTACTAGAAC
CCATGTTTGTCGCATTCGAAGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAACCTTTC
TTGCAAAACCAAAACATCAACATTGTG
Found at i:56228 original size:634 final size:635
Alignment explanation
Indices: 54943--56566 Score: 2202
Period size: 634 Copynumber: 2.6 Consensus size: 635
54933 TTCTACAGTG
* * * * ** * * * *
54943 CCTAATCACAAAAAGAATGAAGATAATTACTGGAATTCATGTTTGTCTCATTTGAGGCAT-TAAC
1 CCTAATCACAAAATGAATGAAGATCATTAGTAGAACCCATGTTTGTCGCATTCGAAGC-TCGAAC
* * * * * * * ** *
55007 TTAGACTATAAAAAAATTGGTGGGAAGAAA-GCCTTTGTTGCAAAATCAAAGCATCAAAATCGTG
65 TTAGGCTTTACAAAAATTGGTGGGAA-AAATACCTTTCTTGCGAAACCAAAATATCAATATCGTG
* * * *
55071 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
129 TATCCTAATGAGAAGACTTTGTTTATGGTGCCTATTCTTGAAAA-AAAGGGGATTAGTATGAGTA
* * * * * *
55136 TTGATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAACCGATGGGAAGAAAAGCTTT
193 TTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTT
* * * *
55201 T-TTACAACACCAAAGCGTCAATGTCGTGAATCCTAACGAAGGC-ATTGTGTTTTGGCTTCCCAA
258 TCTTACAACACCAAGGCGTCAATGCCTTGTATCCTAACGAAGGCTA-TGTGTTTTGGCTTCCCAA
* * *
55264 TCTTGAAAAGAATGGAGACTATTGCGAGAATCCATGCCTGTCTTATTCAAGGGATGAACTTTCAC
322 TCTTGAAAAGAATGGAGACTATTACGAGAATCCATGCCTATCTTATTCAACGGATGAACTTTCAC
* * * * *
55329 ATTGAGGAAAATAGGGCAAAAAAAAAAAGATTTCCATCCAAAAGAAAATCGTCAATGTCGTTTAT
387 ATTGAAGAAAATAGCGC--AAAAAAAAAGATTTCCATCCAAAAGAAAATCATCAATATCATTTAT
* * *
55394 CCTAATGAGGAGAATGTGTTTTTAATGCCATACCTCAAAAAGAATGAAGATCATTACTAGAATCC
450 CCTAATGAGGAGAATGTGTTTATAATGCCATACCACAAAAAGAATGAAGATCATTACTACAATCC
* *
55459 ATGTTTGTCTTATTTGAGGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAGCGTTTGTT
515 ATGTTTGTCTCATTTGAGGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTGTT
* * * *
55524 GCAAAACCAAAGCATCAACATTGTGTATCCTAATGAGGAGAATGTGTTTTGTTGCA
580 GCAAAACCAAAGCATCAACATTGTGTATACTAATAAAGAGAATGTGTTTTATTGCA
*
55580 CCTAATCTCAAAATGAATGAAGATCATTAGTAGAACCCATGTTTGTCGCATTCGAAGCTCGAACT
1 CCTAATCACAAAATGAATGAAGATCATTAGTAGAACCCATGTTTGTCGCATTCGAAGCTCGAACT
*
55645 TAGGCTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATTGTGTA
66 TAGGCTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCGTGTA
*
55710 TCCTAATGAGAAGACTTTGTTTATGGTGCCTATTCTTGAAAAAAAGGGGGATTAGTATGAGAATT
131 TCCTAATGAGAAGACTTTGTTTATGGTGCCTATTCTTGAAAAAAA-GGGGATTAGTATGAGTATT
* *
55775 AATGATTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTC
195 AATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTC
** * *
55840 TTACAATGCCAAGGTGTCAATGCCTTGTATCCTAACAAAGGCTATGTGTTTTGGCTTCCCAATCT
260 TTACAACACCAAGGCGTCAATGCCTTGTATCCTAACGAAGGCTATGTGTTTTGGCTTCCCAATCT
* ** * * * *
55905 TAAAAAGAATGGAGACTATTACGAGAATTGATGCTTATCTTATTTAACGGATGAACTTTGA-TTT
325 TGAAAAGAATGGAGACTATTACGAGAATCCATGCCTATCTTATTCAACGGATGAACTTTCACATT
* ** * * *
55969 TAAGAAAATAGCGC-AAAGCAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAG
390 GAAGAAAATAGCGCAAAAAAAAAGATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAA
* * *
56033 TGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAGA-GAAGATCATTACTACAATCCATGT
455 TGAGGAGAATGTGTTTATAATGCCATACCACAAAAAGA-ATGAAGATCATTACTACAATCCATGT
* * * * * *
56097 TTGTCTCATTTGAGGCATGAACTTATAGTTTACAAATATTGAGGGGAAGAAAGCCTTTCTTTGCG
519 TTGTCTCATTTGAGGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTT-GTTGCA
*
56162 AAACCAAAGCATCAACATTGTGTATACTATTAAAGAGAATGTG-TTTATTGCA
583 AAACCAAAGCATCAACATTGTGTATACTAATAAAGAGAATGTGTTTTATTGCA
* *
56214 CCTAATCACAAAATGAATGAAGATCATTAGTAGAACCCATATTTCTCGCATTCGAAGCTCGAACT
1 CCTAATCACAAAATGAATGAAGATCATTAGTAGAACCCATGTTTGTCGCATTCGAAGCTCGAACT
*
56279 TAGGCTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAATATAAATATCGTGTA
66 TAGGCTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCGTGTA
* ** * *
56344 TCCTAATGAGAAGACTTCGTTTATGGCACCTATTCTTGAAAATAAGGGGATTAGTATGAGTATTC
131 TCCTAATGAGAAGACTTTGTTTATGGTGCCTATTCTTGAAAAAAAGGGGATTAGTATGAGTATTA
* *
56409 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAGCGGGGGAAAGAAAAGCTTTTCT
196 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCT
*** * * *
56474 TGTGACACCAAGGCATCAATGCCTTGTATCCTAATGAAGGCTATGTGCTTTGGCTTCCCAATCTT
261 TACAACACCAAGGCGTCAATGCCTTGTATCCTAACGAAGGCTATGTGTTTTGGCTTCCCAATCTT
* *
56539 GAAAAGAATGGAGACTGTTACAAGAATC
326 GAAAAGAATGGAGACTATTACGAGAATC
56567 GTTGCTTGTC
Statistics
Matches: 868, Mismatches: 112, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
633 158 0.18
634 324 0.37
635 44 0.05
636 6 0.01
637 228 0.26
638 107 0.12
639 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (635 bp):
CCTAATCACAAAATGAATGAAGATCATTAGTAGAACCCATGTTTGTCGCATTCGAAGCTCGAACT
TAGGCTTTACAAAAATTGGTGGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCGTGTA
TCCTAATGAGAAGACTTTGTTTATGGTGCCTATTCTTGAAAAAAAGGGGATTAGTATGAGTATTA
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCT
TACAACACCAAGGCGTCAATGCCTTGTATCCTAACGAAGGCTATGTGTTTTGGCTTCCCAATCTT
GAAAAGAATGGAGACTATTACGAGAATCCATGCCTATCTTATTCAACGGATGAACTTTCACATTG
AAGAAAATAGCGCAAAAAAAAAGATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATAATGCCATACCACAAAAAGAATGAAGATCATTACTACAATCCATGTTT
GTCTCATTTGAGGCATGAACGTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTGTTGCAAAA
CCAAAGCATCAACATTGTGTATACTAATAAAGAGAATGTGTTTTATTGCA
Found at i:56939 original size:20 final size:20
Alignment explanation
Indices: 56894--56948 Score: 103
Period size: 19 Copynumber: 2.8 Consensus size: 20
56884 CTGCCAAGGA
56894 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
56914 -ATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
56933 AATGTATCGATACATT
1 AATGTATCGATACATT
56949 GTATCTATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTACTC
Found at i:62464 original size:157 final size:157
Alignment explanation
Indices: 62303--62667 Score: 380
Period size: 157 Copynumber: 2.3 Consensus size: 157
62293 GACTGTCATG
* * *
62303 AGAATCGATGCTTATCTTATTTAATGG-ATGAACTTTGA-TTTCAAGGAAAA-TAGCGCAAAGAA
1 AGAATCCATGCTTATCTCATTTAA-GGCATGAACTTAGACTTT-AA--AAAATTAGCGCAAAG-A
* * * * *
62365 AAGATTTCCATG-CAAA-AAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGT
61 AAGATTTCCATGTCAAACAAAAGCATCAATATCATGTATCATAATGAGAAGAATGTGTTTATAGT
*
62428 GCCTTATCATAAAAAGAATGAAGATCATTACT
126 GCCTTATCACAAAAAGAATGAAGATCATTACT
* * * * ** *
62460 AGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTAAAAAATTGGTGGGAAGAAAGCT
1 AGAATCCATGCTTATCTCATTTAAGGCATGAACTTAGACTTTAAAAAATTAGCGCAAAGAAAGAT
*** * * * *
62525 TTTGTTGTGAAACCAAAGCATCAATATCGTGTATCATAATGCGAAGAATGTGTTTATAGTGCCTT
66 TTCCATGTCAAACAAAAGCATCAATATCATGTATCATAATGAGAAGAATGTGTTTATAGTGCCTT
*
62590 ATCACAAAAAGAATGAAGATCATTGCT
131 ATCACAAAAAGAATGAAGATCATTACT
* * * * *
62617 AGAATCCATGCTTGTCGCATTTGAGGCAAGAACTTAGACTTGATAAAAATT
1 AGAATCCATGCTTATCTCATTTAAGGCATGAACTTAGACTTTA-AAAAATT
62668 GGTGGGAAAA
Statistics
Matches: 173, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
155 13 0.08
156 11 0.06
157 139 0.80
158 10 0.06
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (157 bp):
AGAATCCATGCTTATCTCATTTAAGGCATGAACTTAGACTTTAAAAAATTAGCGCAAAGAAAGAT
TTCCATGTCAAACAAAAGCATCAATATCATGTATCATAATGAGAAGAATGTGTTTATAGTGCCTT
ATCACAAAAAGAATGAAGATCATTACT
Found at i:62737 original size:157 final size:157
Alignment explanation
Indices: 61118--65727 Score: 1031
Period size: 158 Copynumber: 29.2 Consensus size: 157
61108 GACACAAAAA
* * *
61118 AAAATCATCAGTATCATTTATCCTAGTGATGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
1 AAAA-CATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
* * * * * *
61183 TGAAGATCATTACTAGAATTCATTTTTGTCTCATTTAAGGCACA-AACTTAAACTTTACAAAAAT
64 TGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCA-AGAACTTAGACTTTATAAAAAT
* * * * *
61247 TGGAGGGAAGAAAGCCTTTGTTGTGAAACC
128 TGGTGGGAAAAAAACCTTTCTTGCGAAACC
* ** * *
61277 AAAGCATCAATATTGTGTATCATAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
1 AAAACATCAATATCATGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
* * * * * *
61342 GAAAATTATTGCTAGAATCCATTTTTGTCACATTTGAGGCATGAACTTAGACTTGATAAAAATTG
65 GAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATTG
*
61407 GTGGG-AAAATACCTTTCTTGCGAAACC
130 GTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * * *
61434 AAAATATCAATATCGTGTATCCTAATAAGAAGACT-TCGTTTATGGTGCC-TATTC-CTGAAAAT
1 AAAACATCAATATCATGTATCCTAATGAG-AGAATGT-GTTTATAGTGCCTTA-TCAC-AAAAAG
* ** * * * * * * *
61496 AAGGGGGATTAGTATG--AGTATTCATGTTTGTTTTATTTAAGAG-ACA-AACTTTGA-TTCTAT
62 AATGAAGATCA-T-TGCTAGAATCCATGTTTGTCTCATTTGAG-GCA-AGAACTTAGACTT-TAT
*** * *
61556 AAAAAACAGT-GGAAAGAAAACCTTTTCATGCGACACC
122 AAAAATTGGTGGGAAA-AAAACC-TTTCTTGCGAAACC
** * * * * ** ***
61593 AAGGCATCAATGTCATGTATCCTAATGA-AGGCTATGTGTTT-TGGCTTCCCAATCTTGAAAAGA
1 AAAACATCAATATCATGTATCCTAATGAGA-G-AATGTGTTTATAG-TGCCTTATCACAAAAAGA
* * * * * * * ** * * *
61656 ATGGAGACTC-TTACGAGAATCAATGCTTATCTTATTCAAGGGATGAACTTTGA-TTT-TAAGGA
63 ATGAAGA-TCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAA--A
** * ** * **
61718 TAA-T-AAGGCAAAGAAAAGATTTCCATGC-AAAAA
125 -AATTGGTGGGAAA-AAAACCTTT-CTTGCGAAACC
* * * * *
61751 AAAATCGTCAATGTCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTTTTCACAAAAAGAA
1 AAAA-CATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
* * * * * *
61816 AGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAACATAGTCTTTATAAAAATT
64 TGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATT
* * * *
61881 GATGGGAAGAAAGCCTTTGTTGCGAAACC
129 GGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * ** *
61910 AAAGCATCAACATCATGTATCCTAATGAGGAGAATGTGTTTATTGCACCTAATCA-AAAAACGAA
1 AAAACATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAA-GAA
* * * ** * *
61974 TGAAGATCATTAG-TAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAAT
64 TGAAGATCATT-GCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAAT
**
62038 TGGTGGGAAAAATGCCTTTCTTGCGAAACC
128 TGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * ** **
62068 AAAATATTAATATCGT-TATCCTAATGAGAAAACT-TCATTTATAGTGCCAAATCTTGAAAAA-A
1 AAAACATCAATATCATGTATCCTAATGAGAGAA-TGT-GTTTATAGTGCCTTATC-ACAAAAAGA
* * * *
62130 ATGGGAAG-T-AGTATG--AGTATTCATGTTTG-CTTTATCTATGAGGC-A-AACTTTGA-TTCT
63 AT--GAAGATCA-T-TGCTAGAATCCATGTTTGTC-TCAT-T-TGAGGCAAGAACTTAGACTT-T
* * * *
62187 ATAAAAAAT-GAGGGAAAGAAAAGCTTTCTTGC-AACCCC
120 ATAAAAATTGGTGGGAAA-AAAACCTTTCTTGCGAA-ACC
* * * * ** ***
62225 AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAA
1 AAAACATCAATATCATGTATCCTAATG-AGAGAATGTGTTTATAG-TGCCTTATCACAAAAAGAA
* * * * * * *
62289 T-AGAGA-C--TGTCATGAGAATCGATGCTTATCTTATTTAATGG-ATGAACTTTGA-TTTCA-A
64 TGA-AGATCATTG-C-T-AGAATCCATGTTTGTCTCATTTGA-GGCAAGAACTTAGACTTT-ATA
* * * ** *
62347 GGAAAA-TAG-CGCAAAGAAAAGATTTCCATGC-AAA--
123 --AAAATTGGTGGGAAA-AAAACCTTT-CTTGCGAAACC
* * *
62381 AAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTTATCATAAAAAGAA
1 AAAA-CATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
* * *
62446 TGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATT
64 TGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATT
* * * * *
62510 GGTGGGAAGAAAGCTTTTGTTGTGAAACC
129 GGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * *
62539 AAAGCATCAATATCGTGTATCATAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
1 AAAACATCAATATCATGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
* * *
62604 GAAGATCATTGCTAGAATCCATGCTTGTCGCATTTGAGGCAAGAACTTAGACTTGATAAAAATTG
65 GAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATTG
*
62669 GTGGGAAAAATACCTTTCTTGCGAAACC
130 GTGGGAAAAAAACCTTTCTTGCGAAACC
* * ** * * *
62697 AAAATATCAATATCGTGTATCCTAATGAGAGCCT-TCGTTTATGGTGCC-TATTCTA-GAAAATA
1 AAAACATCAATATCATGTATCCTAATGAGAGAATGT-GTTTATAGTGCCTTA-TC-ACAAAAAGA
* ** * * * * * * *
62759 AGGGGGATTAGTATG--AGTATTCATGTTTGTTTTATTTAAGAG-ACA-AACTTTGA-TTCTATA
63 ATGAAGATCA-T-TGCTAGAATCCATGTTTGTCTCATTTGAG-GCA-AGAACTTAGACTT-TATA
** * * * *
62819 AAAAACGGT-GGAAAGAAAAGCTTTTCGTGCGACACT
123 AAAATTGGTGGGAAA-AAAA-CCTTTCTTGCGAAACC
*** * * * * * ** ***
62855 ATGGCGTCAATGTCATATATCCTAATGA-AGGCTATGTGTTT-TAGTTTCCCAATCTTGAAAAGA
1 AAAACATCAATATCATGTATCCTAATGAGA-G-AATGTGTTTATAG-TGCCTTATCACAAAAAGA
* * * * * * ** * * *
62918 AT-AGAGACTC-TTAG-AAGAGTCGATGCTTATCTTATTCAAGGGATGAACTTTGA-TTT-TAAG
63 ATGA-AGA-TCATT-GCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAA-
* ** *
62978 GATAATAAGGT---AAAGAAAAGATTTCTATGC-AAA-A
124 -A-AAT-TGGTGGGAAA-AAAACCTTTCT-TGCGAAACC
* * * *
63012 AAAATCATCAATGTCATTTATCCTAATGAGGAGAATGAGTTTATAGTGCCTTTTCACAAAAAGAA
1 AAAA-CATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
* ** * * * * *
63077 AGAATTTCATTACTAGAATCCATGTTTGTTTTATTTGAGGCACA-AACATAGACTTTATAAAGAT
64 TGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCA-AGAACTTAGACTTTATAAAAAT
* * * * *
63141 TGATGGGAAGAAAGCCTTTGTTGCGAATCC
128 TGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * * * * *
63171 AAAGCATCAACATCGTGTATCTTAATGAGGATAATGTGTTTATTGCGCCTAATCACAAAATGAAT
1 AAAACATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
* * * * ** *
63236 GAAGATCATTAG-TAGAATCCATGTTTATCACATTCGAAGCTCGAACTTAGGCTTT-TCAAAAAT
65 GAAGATCATT-GCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTAT-AAAAAT
** *
63299 TGGTGGGAAAAATGCCTTTCTTGCGAAACA
128 TGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * **
63329 AAAATATTAATATCATGTATCCTAATAAGAAGACT-TCTATTATAGTGCCAAATC-CTGAAAAA-
1 AAAACATCAATATCATGTATCCTAATGAG-AGAATGTGT-TTATAGTGCCTTATCAC--AAAAAG
* * * * ** *
63391 AATGGTAG-T-ACTATG--AGCATTCATGTTTGCCTTGTTTTAGCGGC-A-AACTTTA-A-TTCT
62 AAT-GAAGATCA-T-TGCTAGAATCCATGTTTGTC-TCATTT-GAGGCAAGAAC-TTAGACTT-T
* * * * * *
63448 ATAAAAAAT-GAGGAAAAGAAAAGCTTTTCTTACGACACC
120 ATAAAAATTGGTGGGAAA-AAAA-CCTTTCTTGCGAAACC
* * * ** * * ** ***
63487 AAAGCATCAATGTCGTGTATCCTAACAAG-GCAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAA
1 AAAACATCAATATCATGTATCCTAATGAGAG-AATGTGTTTATAG-TGCCTTATCACAAAAAGAA
* * * * * ** * * * * **
63550 TGGAGA-C--TGTTATGAGGATCAATGCTTGTCTTATTCAAGGGATGAACTTTCA-AGTTGAGGA
64 TGAAGATCATTGCTA-GA--ATCCATGTTTGTCTCATTTGAGGCAAGAAC-TT-AGACTTTATAA
* * ** ** * **
63611 AAA-TAG-GGCAAAGAAAAGATTTC-CACACAAAAG
124 AAATTGGTGGGAAA-AAAACCTTTCTTGC-GAAACC
* * * * ** * *
63644 AAGATCATCAATATCAT-TCATCCTAAAGAGGAGAACGTGTGTATAGCACCTAATCACAAAAACA
1 AA-AACATCAATATCATGT-ATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGA
* * * *
63708 ACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTATAAAAAT
63 ATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAAT
* * * *
63773 TAGG-GGGAAGAAAGCCTTTATTACGAAACC
128 T-GGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * *
63803 AAAGCATCAACATCGTGCATCCTAATGAGGAGAATGTG-TTATTGTG-CTTACTCACAAAATGAA
1 AAAACATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTA-TCACAAAAAGAA
* * * * * * * *
63866 TGAAGATCATTAG-TAGAATCCATGTTTATCACATTCGAAGCTTA-AACTAAGGCTTTAGAAAAA
64 TGAAGATCATT-GCTAGAATCCATGTTTGTCTCATTTGAGGC-AAGAACTTAGACTTTATAAAAA
* ** * *
63929 TTGGTAGGAAAAATGCCTTTATTGCGAAACT
127 TTGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * * * * * *
63960 AAAATATTAGTATCGTGTATTCTAATGAGAAGACT-TCGATTGTAGTG-CTAAATC-CTAAAAAA
1 AAAACATCAATATCATGTATCCTAATGAG-AGAATGT-GTTTATAGTGCCT-TATCAC-AAAAAG
** * * * * * ** *
64022 AATGGGGAGT-AGTGCGAGTATTCATGTTTGGCTTGTTTTAGAGGC-A-AACTTTGA-TTCTATA
62 AATGAAGA-TCATTGCTAGAATCCATGTTTGTC-TCATTT-GAGGCAAGAACTTAGACTT-TATA
** * * **
64083 AAAA-ACGAGGGAAATAAAAGCTTTTCTTGCGGCACC
123 AAAATTGGTGGGAAA-AAAA-CCTTTCTTGCGAAACC
* ** ** * ** * * ** ***
64119 ACAGTAT-TTTGTTGTGTATCCTAATGAAGAGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAA
1 AAAACATCAATATCATGTATCCTAATG-AGAGAATGTGTTTATAG-TGCCTTATCACAAAAAGAA
* * * * * *
64182 TGAAGA-CTATT-ATGAGAATCGAT-TCTTATCTTATTTAATGG-ATA-AACTTTGA-TTT-TAA
64 TGAAGATC-ATTGCT-AGAATCCATGT-TTGTCTCATTTGA-GGCA-AGAACTTAGACTTTATAA
* * * ** * **
64240 GGAAAATAG-GGCAAAGAAAAGATTTCCATGC-AAAAG
124 --AAATTGGTGGGAAA-AAAACCTTT-CTTGCGAAACC
* * * ** *
64276 AAAATCATTAGTATCATTTATCCTGGTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAGGAA
1 AAAA-CATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
* * * * * * **
64341 TGAAGATTATTATTACTAGAATCCATGTCTGTCTTATTTGAGGCACGAACATAGACTTTGCAAAA
64 TGAAG---ATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAA
* * * * *
64406 ATTGGTCGGAAGAAAGCCTTTGTTGTGAAACC
126 ATTGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * *
64438 AAAGCATCAATATCGTGTATCATAATGCGGAAAATGTGTTTATAGTGCCTAATC-CAAAAAAGAA
1 AAAACATCAATATCATGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAA
** * * ** * * * * * *
64502 TGGGGAT--TTGTGTGAGTATTGATGTTTGCCTTATTTAAGAG-ACA-AACTTTGAATCTATAAA
64 TGAAGATCATTG-CT-AGAATCCATGTTTGTCTCATTTGAG-GCA-AGAACTTAGACTTTATAAA
* ** * * *
64563 AAATGACGGGAAGAAAAGCTTTTCTTGCGACACC
125 AATTGGTGGGAA-AAAAACCTTTCTTGCGAAACC
* * * * * * * * ** ***
64597 AAAGCGTCAATGTCGTGTATGCTAACGA-AGGCAATGTGTTT-TGGCTTCCCCATCTTGAAAAGA
1 AAAACATCAATATCATGTATCCTAATGAGA-G-AATGTGTTTATAG-TGCCTTATCACAAAAAGA
* ** * * * *** * ** * * ** **
64660 ATGGAGATTGTTACGAGAATCGATGCCCGTCTTATTCAAGGGATGAACTTTCA-TGTTGAGGAAA
63 ATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACT-TT-ATAAAA
* * ** ** * **
64724 A-TAG-GGCAAAGAAAAGATTTC-CACACAAAAG
126 ATTGGTGGGAAA-AAAACCTTTCTTGC-GAAACC
* * * * * * *
64755 AAGATCATCAATATCAT-TCAACCTAAAGAGGAGAACGTGTTTATAGTGCCTAATCACACAAACA
1 AA-AACATCAATATCATGT-ATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGA
* * * **
64819 ACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACTAACTTAGACTTTATAAAAAT
63 ATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAAT
* ** * *
64884 TGGGGGGATGAAAGCCTTTATTGCGAAACC
128 TGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * *
64914 AAAGCATCAACATCGTGTATCCTAATGGGGAGAAAGTGTTTAT--TGCGCTTAATCACAAAATGA
1 AAAACATCAATATCATGTATCCTAAT-GAGAGAATGTGTTTATAGTGC-CTT-ATCACAAAAAGA
* * * * * * *
64977 ATGAAGATCATTAG-TAGAATCCATGTTTATCACATTCGAAGCTTA-AACTTAGGCTTTAGAAAA
63 ATGAAGATCATT-GCTAGAATCCATGTTTGTCTCATTTGAGGC-AAGAACTTAGACTTTATAAAA
** * *
65040 ATTGGTTAGAAAAATACCTTTCTTGCGAAACT
126 ATTGGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * * * **
65072 AAAATATTAATATCGTGTATTCTAATGAGAAAACT-TCGATTATAATGCCAAATC-CTGAAAAA-
1 AAAACATCAATATCATGTATCCTAATGAGAGAA-TGT-GTTTATAGTGCCTTATCAC--AAAAAG
** * * * ** *
65134 AATGGGGAGT-AGTATG--AGTATTCATGTTTGCCTTGTTTTAGAGG-AA-AACTTTGA-TTCTA
62 AATGAAGA-TCA-T-TGCTAGAATCCATGTTTGTC-TCATTT-GAGGCAAGAACTTAGACTT-TA
** * * *
65193 TAAAAA-ACGAGGGAAAGAAAAGCTTTTCTTGCGACACC
121 TAAAAATTGGTGGGAAA-AAAA-CCTTTCTTGCGAAACC
* * * * * * ** ** *
65231 AAAGCATCAATGTCGTGTATCCTAATGAAGAAAATGTGTTT-TGGCTTCCCAATCTTGAACAA-A
1 AAAACATCAATATCATGTATCCTAATG-AGAGAATGTGTTTATAG-TGCCTTATC-ACAAAAAGA
* ** * * * * * * ** *
65294 ATGGAGATTGTT-ATGAGAATCGATGCTTATCTTATTTAACGG-GTGAACTTTGA-TTT-TAAGG
63 ATGAAGATCATTGCT-AGAATCCATGTTTGTCTCATTTGA-GGCAAGAACTTAGACTTTATAA--
* * * ** *
65355 AAAATAG-GGCAAAGAAAATATTTCAATGCAGAAGA--
124 AAATTGGTGGGAAA-AAAACCTTTC-TTGC-GAA-ACC
* * * * *
65390 AAATCATCAATGTCATTTATCCTAGTGAGGAGAATATGTTTATAGTGCCTTATCACAAAAAGAAT
1 AAAACATCAATATCATGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
* * *
65455 GAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACA-AACTTAGACTTTACAAAAATT
65 GAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCA-AGAACTTAGACTTTATAAAAATT
* * * * * *
65519 AGCGGGAAGAAAGCCTTTGTTGTGAAACC
129 GGTGGGAAAAAAACCTTTCTTGCGAAACC
* * * * * *
65548 AAAGCATCCATATCATGTATCATAATGCAGAGAATATGTTTATAGTGCCTAATCACAAAATGAAT
1 AAAACATCAATATCATGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
* * * *
65613 GAAGATCAATAG-TAGAATCCATGTTTGTCGCATTTGAGGCACG--CTTAGACTTTACAAAAATT
65 GAAGATC-ATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATT
* ** * *
65675 GGTGCGAAAAATGCCGTTCTTGCAAAACC
129 GGTGGGAAAAAAACCTTTCTTGCGAAACC
* *
65704 -AAATATCAGTATCATGTATCCTAA
1 AAAACATCAATATCATGTATCCTAA
65728 CAAGTAGACT
Statistics
Matches: 3200, Mismatches: 940, Indels: 626
0.67 0.20 0.13
Matches are distributed among these distances:
153 4 0.00
155 27 0.01
156 139 0.04
157 698 0.22
158 1302 0.41
159 817 0.26
160 86 0.03
161 68 0.02
162 49 0.02
163 8 0.00
164 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (157 bp):
AAAACATCAATATCATGTATCCTAATGAGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATG
AAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATTGG
TGGGAAAAAAACCTTTCTTGCGAAACC
Found at i:63335 original size:632 final size:631
Alignment explanation
Indices: 60267--64496 Score: 5157
Period size: 632 Copynumber: 6.7 Consensus size: 631
60257 ACTAGAATCT
* * * * * *
60267 ATGTTTGTCTCATTT--GAGGCACGAACTTCGATTCTATCAAAAACGATGCAAAAAAAAGCTTTT
1 ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTT
* * * * * *
60330 CTTGCAATACCAAAGCATCAATGTCGTGTATCGTAACGAAG-GCAA--CGTTTTGGCTTCCCAAT
64 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG-AATGTGTTTTGGCTTCCCAAT
* * * * * *
60392 CTTGAGAAGAATGGAGACTGTTATGAGAATCAATGCCTGTCTTATTCAAGGGATGAACTTTCATG
128 CTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATT
* * * * *
60457 TTGAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACGTCAATGTCATTTATCTTA
193 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTA
* * * * *
60522 ATGAGAAGAATGTGTTTATAGTCCCTTATCACAAATAGATTGAAGATCATTACTAGAACCCATGT
257 ATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGT
* * *
60587 TTATCTCATTTGAGGCGCAAACTTAGACTTTGA-AAAAATTGATGGGAAGAAAGCCTTTGTTGTG
322 TTGTCTCATTTGAGGCACGAACTTAGACTTT-ATAAAAATTGATGGGAAGAAAGCCTTTGTTGTG
* * * * **
60651 AAAGCAAAGCATCAACATTGTGTATCCTAATGAGAAGAATGTGTTTATTACGCCTAATCACAAAA
386 AAACCAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAA
*
60716 TGAATGAAGATC---A-T----T--ATGTTTGTCGCATTCGAAGCTCGAACTTAGGCTTTACAAA
451 TGAATGAAGATCATTAGTAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAA
* *
60771 AATTAAGG-GGG-AAAATGCCTTTCTTGCGAAACCAAAATATTAATATCATGTATCCTAAAGAGA
516 AATT--GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGA
* * *
60834 TGACTTCGTTTATAGTGCCAAGTCTTGAAAAAATGGGAAGTAGTATGAGTATTC
579 AGACTTCGTTTATAGTGCCAATTC-TGAAAAAATGGGGAGTAGTATGAGTATTC
* * * *
60888 ATGTTT-TCCTTATTCAAGAGGCAGACTTTGATTCGATAAAAAACAAGGGAAAGAAAAGC-TTTC
1 ATGTTTGT-CTTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTC
* *
60951 TTGCGACACCAAAGCATCAATGTCGTGTATCCT-ATGAAGAGAATGTGTTTTGGCTTCCCAATCC
65 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCT
* * ** * * *
61015 TGAAAAGAATGGAAACTATTACAAGAATTGATGCTTATCTTATTTAACGGATGAACTTTGATTTT
130 TGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATTTT
* * * * ** * *
61080 AAGAAAAATAGGGCAACGAAATGATTTCGACACAAAAAAAAATCATCAGTATCATTTATCCTAGT
195 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAAT
* * *
61145 GATGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATTCATTTTT
259 GAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
61210 GTCTCATTTAAGGCACAAACTTAAACTTTACAAAAATTGGA-GGGAAGAAAGCCTTTGTTGTGAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATT-GATGGGAAGAAAGCCTTTGTTGTGAA
* * * * * *
61274 ACCAAAGCATCAATATTGTGTATCATAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAG
388 ACCAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATG
* * * * * * * *
61339 AATGAAAATTATT-GCTAGAATCCATTTTTGTCACATTTGAGGCAT-GAACTTAGACTTGATAAA
453 AATGAAGATCATTAG-TAGAATCCATGTTTGTCACATTCGAAGC-TCGAACTTAGGCTTTACAAA
* * *
61402 AATTGGTGGG-AAAATACCTTTCTTGCGAAACCAAAATATCAATATCGTGTATCCTAATAAGAAG
516 AATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGAAG
* * * *
61466 ACTTCGTTTATGGTGCCTATTCCTGAAAATAAGGGGGATTAGTATGAGTATTC
581 ACTTCGTTTATAGTGCCAATT-CTGAAAA-AATGGGGAGTAGTATGAGTATTC
* * *
61519 ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAAAAAC-AGTGGAAAGAAAACCTTTTC
1 ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAG-GGAAAGAAAAGCTTTTC
* * *
61583 ATGCGACACCAAGGCATCAATGTCATGTATCCTAATGAAG-GCTATGTGTTTTGGCTTCCCAATC
65 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG-AATGTGTTTTGGCTTCCCAATC
* * *
61647 TTGAAAAGAATGGAGACTCTTACGAGAATCAATGCTTATCTTATTCAAGGGATGAACTTTGATTT
129 TTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATTT
* * * *
61712 TAAGGATAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCGTCAATGTCATTTATCCTAA
194 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAA
* * *
61777 TGAGGAGAATATGTTTATAGTGCCTTTTCACAAAAAGAAAGAAGATCATTACTAGAATCCATGTT
258 TGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTT
* * * *
61842 TGTTTCATTTGAGGCACGAACATAGTCTTTATAAAAATTGATGGGAAGAAAGCCTTTGTTGCGAA
323 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAGCCTTTGTTGTGAA
* * ** * *
61907 ACCAAAGCATCAACATCATGTATCCTAATGAGGAGAATGTGTTTATTGCACCTAATCAAAAAACG
388 ACCAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATG
61972 AATGAAGATCATTAGTAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAA
453 AATGAAGATCATTAGTAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAA
*
62037 TTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGT-TATCCTAATGAGAAAAC
518 TTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGAAGAC
* * *
62101 TTCATTTATAGTGCCAAATCTTGAAAAAAATGGGAAGTAGTATGAGTATTC
583 TTCGTTTATAGTGCCAATTC-TG-AAAAAATGGGGAGTAGTATGAGTATTC
* * *
62152 ATGTTTG-CTTTATCTATGAGGCAAACTTTGATTCTATAAAAAATGAGGGAAAGAAAAGC-TTTC
1 ATGTTTGTC-TTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTC
* *
62215 TTGCAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCT
65 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCT
* * * * *
62280 TGAAAAGAATAGAGACTGTCATGAGAATCGATGCTTATCTTATTTAATGGATGAACTTTGATTTC
130 TGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATTTT
* *
62345 AAGGAAAATAGCGCAAAGAAAAGATTTCCATGC-AAAAAAATCATCAATATCATTTATCCTAGTG
195 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATG
* *
62409 AGGAGAATGTGTTTATAGTGCCTTATCATAAAAAGAATGAAGATCATTACTAGAATCCATGTTTA
260 AGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
62474 TCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATTGGTGGGAAGAAAGCTTTTGTTGTGAAAC
325 TCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAGCCTTTGTTGTGAAAC
* * * * * *
62538 CAAAGCATCAATATCGTGTATCATAATGCGAAGAATGTGTTTATAGTGCCTTATCACAAAAAGAA
390 CAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAA
* * * * ** * * *
62603 TGAAGATCATT-GCTAGAATCCATGCTTGTCGCATTTGAGGCAAGAACTTAGACTTGATAAAAAT
455 TGAAGATCATTAG-TAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAAT
* * *
62667 TGGTGGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCGTGTATCCTAATGAG-AGCCT
519 TGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGAAGACT
* * * *
62731 TCGTTTATGGTGCCTATTCTAGAAAATAAGGGGGATTAGTATGAGTATTC
584 TCGTTTATAGTGCCAATTCT-GAAAA-AATGGGGAGTAGTATGAGTATTC
* *
62781 ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAAAAACG-GTGGAAAGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAG-GGAAAGAAAAGCTTTTC
* * ** * * * * *
62845 GTGCGACACTATGGCGTCAATGTCATATATCCTAATGAAG-GCTATGTGTTTTAGTTTCCCAATC
65 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG-AATGTGTTTTGGCTTCCCAATC
* * *
62909 TTGAAAAGAATAGAGACTCTTA-GAAGAGTCGATGCTTATCTTATTCAAGGGATGAACTTTGATT
129 TTGAAAAGAATGGAGACTGTTATG-AGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATT
* * * * *
62973 TTAAGGATAATAAGGTAAAGAAAAGATTTCTATGCAAAAAAAATCATCAATGTCATTTATCCTAA
193 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAA
* * * **
63038 TGAGGAGAATGAGTTTATAGTGCCTTTTCACAAAAAGAAAGAATTTCATTACTAGAATCCATGTT
258 TGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
63103 TGTTTTATTTGAGGCACAAACATAGACTTTATAAAGATTGATGGGAAGAAAGCCTTTGTTGCGAA
323 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAGCCTTTGTTGTGAA
* * * *
63168 TCCAAAGCATCAACATCGTGTATCTTAATGAGGATAATGTGTTTATTGCGCCTAATCACAAAATG
388 ACCAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATG
* *
63233 AATGAAGATCATTAGTAGAATCCATGTTTATCACATTCGAAGCTCGAACTTAGGCTTTTCAAAAA
453 AATGAAGATCATTAGTAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAA
* * *
63298 TTGGTGGGAAAAATGCCTTTCTTGCGAAACAAAAATATTAATATCATGTATCCTAATAAGAAGAC
518 TTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGAAGAC
* * * *
63363 TTC-TATTATAGTGCCAAATCCTGAAAAAAAT-GGTAGTACTATGAGCATTC
583 TTCGT-TTATAGTGCC-AATTCTG-AAAAAATGGGGAGTAGTATGAGTATTC
* * * * * * *
63413 ATGTTTGCCTTGTTTTAGCGGCAAACTTTAATTCTATAAAAAATGAGGAAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTCT
* * *
63478 TACGACACCAAAGCATCAATGTCGTGTATCCTAA-CAAG-GCAATGTGTTTTGGCTTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG-AATGTGTTTTGGCTTCCCAATCT
* * * * **
63541 TGAAAAGAATGGAGACTGTTATGAGGATCAATGCTTGTCTTATTCAAGGGATGAACTTTCAAGTT
130 TGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATTTT
* ** * * *
63606 GAGGAAAATAGGGCAAAGAAAAGATTTCCACACAAAAGAAGATCATCAATATCATTCATCCTAAA
195 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAT
* * ** * * *
63671 GAGGAGAACGTGTGTATAGCACCTAATCACAAAAACAACGAAGATCATTACTAGAATCCATGTTT
259 GAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTT
* * * **
63736 GTCTCATTTGAGGCACGAACTTAGGCTTTATAAAAATT-AGGGGGAAGAAAGCCTTTATTACGAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGA-TGGGAAGAAAGCCTTTGTTGTGAA
* * * *
63800 ACCAAAGCATCAACATCGTGCATCCTAATGAGGAGAATGTG-TTATTGTGCTTACTCACAAAATG
388 ACCAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATG
* ** * *
63864 AATGAAGATCATTAGTAGAATCCATGTTTATCACATTCGAAGCTTAAACTAAGGCTTTAGAAAAA
453 AATGAAGATCATTAGTAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAA
* * * * *
63929 TTGGTAGGAAAAATGCCTTTATTGCGAAACTAAAATATTAGTATCGTGTATTCTAATGAGAAGAC
518 TTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGAAGAC
* * * * * **
63994 TTCGATTGTAGTGCTAAATCCTAAAAAAAATGGGGAGTAGTGCGAGTATTC
583 TTCGTTTATAGTGC-CAATTCT-GAAAAAATGGGGAGTAGTATGAGTATTC
* * * *
64045 ATGTTTGGCTTGTTTTAGAGGCAAACTTTGATTCTATAAAAAACGAGGGAAATAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTCT
* * * ** **
64110 TGCGGCACCACAGTAT-TTTGTTGTGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTT
* * * * * *
64174 GAAAAGAATGAAGACTATTATGAGAATCGATTCTTATCTTATTTAATGGATAAACTTTGATTTTA
131 GAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATTTTA
* * **
64239 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAGTATCATTTATCCTGGTG
196 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATG
* *
64304 AGGAGAATGTGTTTATAGTGCCTTATCACAAAAGGAATGAAGATTATTATTACTAGAATCCATGT
260 AGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAG---ATCATTACTAGAATCCATGT
* * * ** * *
64369 CTGTCTTATTTGAGGCACGAACATAGACTTTGCAAAAATTGGTCGGAAGAAAGCCTTTGTTGTGA
322 TTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAGCCTTTGTTGTGA
* * * *
64434 AACCAAAGCATCAATATCGTGTATCATAATGCGGAAAATGTGTTTATAGTGCCTAATC-CAAAA
387 AACCAAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAA
64497 AAGAATGGGG
Statistics
Matches: 3079, Mismatches: 461, Indels: 124
0.84 0.13 0.03
Matches are distributed among these distances:
619 7 0.00
620 37 0.01
621 330 0.11
622 6 0.00
623 6 0.00
625 1 0.00
628 7 0.00
629 278 0.09
630 343 0.11
631 501 0.16
632 899 0.29
633 488 0.16
634 51 0.02
635 113 0.04
636 12 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (631 bp):
ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTCT
TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTT
GAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTGATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGA
GGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGATGGGAAGAAAGCCTTTGTTGTGAAACC
AAAGCATCAACATCGTGTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAAT
GAAGATCATTAGTAGAATCCATGTTTGTCACATTCGAAGCTCGAACTTAGGCTTTACAAAAATTG
GTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATTAATATCGTGTATCCTAATGAGAAGACTTC
GTTTATAGTGCCAATTCTGAAAAAATGGGGAGTAGTATGAGTATTC
Found at i:64788 original size:479 final size:475
Alignment explanation
Indices: 64002--64956 Score: 1193
Period size: 479 Copynumber: 2.0 Consensus size: 475
63992 ACTTCGATTG
* * * *
64002 TAGTGCTAAATCCTAAAAAAAATGGGGAGTAGTGCGAGTATTCATGTTTGGCTTGTTTTAGAGGC
1 TAGTGCTAAATCCTAAAAAAAATGGGGAGTAGTGCGAGTATTCATGTTTGCCTTATTTAAGAGAC
* * * * * ** *
64067 AAACTTTGATTCTATAAAAAACGAGGGAAATAAAAGCTTTTCTTGCGGCACCACAGTATTTTGTT
66 AAACTTTGAATCTATAAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAATGTC
* *
64132 GTGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAAGACTATTATGA
131 GTGTATCCTAACGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAAGACTATTACGA
* ** * * * *
64197 GAATCGATTCTTATCTTATTTAATGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
196 GAATCGATGCCCATCTTATTCAAGGGATAAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGA
** * * * * *** *
64262 TTTCCATGCAAAAGAAAATCATTAGTATCATTTATCCTGGTGAGGAGAATGTGTTTATAGTGCCT
261 TTTCCACACAAAAGAAAATCATCAATATCATTCAACCTAAAGAGGAGAACGTGTTTATAGTGCCT
* * * * * *
64327 TATCACA-AAAGGAATGAAGATTATTATTACTAGAATCCATGTCTGTCTTATTTGAGGCACGAAC
326 AATCACACAAA-CAACGAAG---ATCATTACTAGAATCCATGTCTGTCTCATTTGAAGCACGAAC
* * * * *
64391 ATAGACTTTGCAAAAATTGGTCGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGT
387 ATAGACTTTACAAAAATTGGGCGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAACATCGTGT
64456 ATCATAATGCGGA-AAATGTGTTTA
452 ATCATAATGCGGAGAAA-GTGTTTA
* * * *
64480 TAGTGCCT-AATCC-AAAAAAGAATGGGGATTTGTGTGAGTATTGATGTTTGCCTTATTTAAGAG
1 TAGTG-CTAAATCCTAAAAAA-AATGGGGAGTAGTGCGAGTATTCATGTTTGCCTTATTTAAGAG
* *
64543 ACAAACTTTGAATCTATAAAAAATGACGGG-AAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAA
64 ACAAACTTTGAATCTATAAAAAACGA-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT-AA
* * * * *
64607 TGTCGTGTATGCTAACGAAG-GCAATGTGTTTTGGCTTCCCCATCTTGAAAAGAATGGAGATTGT
127 TGTCGTGTATCCTAACGAAGAG-AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAAGACTAT
* * *
64671 TACGAGAATCGATGCCCGTCTTATTCAAGGGATGAACTTTCATGTTGAGGAAAATAGGGCAAAGA
191 TACGAGAATCGATGCCCATCTTATTCAAGGGATAAACTTTCATGTTAAGGAAAATAGGGCAAAGA
*
64736 AAAGATTTCCACACAAAAGAAGATCATCAATATCATTCAACCTAAAGAGGAGAACGTGTTTATAG
256 AAAGATTTCCACACAAAAGAAAATCATCAATATCATTCAACCTAAAGAGGAGAACGTGTTTATAG
* *
64801 TGCCTAATCACACAAACAACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACTAA
321 TGCCTAATCACACAAACAACGAAGATCATTACTAGAATCCATGTCTGTCTCATTTGAAGCACGAA
* * * *
64866 CTTAGACTTTATAAAAATTGGGGGGATGAAAGCCTTTATTGCGAAACCAAAGCATCAACATCGTG
386 CATAGACTTTACAAAAATTGGGCGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAACATCGTG
* *
64931 TATCCTAATGGGGAGAAAGTGTTTA
451 TATCATAATGCGGAGAAAGTGTTTA
64956 T
1 T
64957 TGCGCTTAAT
Statistics
Matches: 405, Mismatches: 65, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
476 112 0.28
477 9 0.02
478 96 0.24
479 185 0.46
480 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (475 bp):
TAGTGCTAAATCCTAAAAAAAATGGGGAGTAGTGCGAGTATTCATGTTTGCCTTATTTAAGAGAC
AAACTTTGAATCTATAAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAATGTC
GTGTATCCTAACGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAAGACTATTACGA
GAATCGATGCCCATCTTATTCAAGGGATAAACTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGA
TTTCCACACAAAAGAAAATCATCAATATCATTCAACCTAAAGAGGAGAACGTGTTTATAGTGCCT
AATCACACAAACAACGAAGATCATTACTAGAATCCATGTCTGTCTCATTTGAAGCACGAACATAG
ACTTTACAAAAATTGGGCGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAACATCGTGTATCA
TAATGCGGAGAAAGTGTTTA
Found at i:65590 original size:634 final size:627
Alignment explanation
Indices: 64476--66073 Score: 1952
Period size: 634 Copynumber: 2.5 Consensus size: 627
64466 GGAAAATGTG
* * * *
64476 TTTATAGTGCCTAATCC-AAAAAAGAATGGGGATTTGTGTGAGTATTGATGTTTGCCTTATTTAA
1 TTTATAGTGCCTAATCCTGAAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAA
* * *
64540 GA-GACAAACTTTGAATCTATAAAAAATGACGGG-AAGAAAAGCTTTTCTTGCGACACCAAAGCG
65 GAGGA-AAACTTTGATTCTATAAAAAACGA-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
64603 TCAATGTCGTGTATGCTAACGAAGGCAATGTGTTTTGGCTTCCCCATCTTGAAAAGAATGGAGAT
128 TCAATGTCGTGTATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAA-AATGGAGAT
** * * *
64668 TGTTACGAGAATCGATGCCCGTCTTATTCAAGGGATGAACTTTCATGTTGAGGAAAATAGGGCAA
192 TGTTACGAGAATCGATG-CTTTCTTATTTAAGGG-TGAACTTTCATTTTAAGGAAAATAGGGCAA
** * * * ** *
64733 AGAAAAGATTTCCACACAAAAGAAGATCATCAATATCATTCAACCTAAAGAGGAGAACGTGTTTA
255 AGAAAAGATTTCCATGC-AAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTA
* *
64798 TAGTGCCTAATCACACAAACAACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCAC
319 TAGTGCCTAATCACAAAAACAACGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAAGCAC
* * * * *
64863 TAACTTAGACTTTATAAAAATTGGGGGGATGAAAGCCTTTATTGCGAAACCAAAGCATCAACATC
384 AAACTTAGACTTTACAAAAATTAGCGGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAACATC
* * ** * * *
64928 GTGTATCCTAATGGGGAGAAAGTGTTTATTGCGCTTAATCACAAAATGAATGAAGATCATTAGTA
449 ATGTATCATAATGCAGAGAAAGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCAATAGTA
* * *
64993 GAATCCATGTTTATCACATTCGAAGCTTAAACTTAGGCTTTAGAAAAATTGGTTAGAAAAATACC
514 GAATCCATGTTTATCACATTCGAAGC--AAACTTAGACTTTACAAAAATTGGTGAGAAAAATACC
* * * * * **
65058 TTTCTTGCGAAACTAAAATATTAATATCGTGTATTCTAATGAGAAAACTTCGA
577 GTTCTTGCAAAAC-AAAATATCAATATCATGTATCCTAACAAGAAAACTTC-A
* * * * *
65111 -TTATAATGCCAAATCCTGAAAAAAATGGGGAGTAGTATGAGTATTCATGTTTGCCTTGTTTTAG
1 TTTATAGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAG
65175 AGGAAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
66 AGGAAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
*
65240 ATGTCGTGTATCCTAATGAAGAAAATGTGTTTTGGCTTCCCAATCTTGAACAAAATGGAGATTGT
131 ATGTCGTGTATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAA-AAAATGGAGATTGT
* *
65305 TATGAGAATCGATGCTTATCTTATTTAACGGGTGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
195 TACGAGAATCGATGCTT-TCTTATTTAA-GGGTGAACTTTCATTTTAAGGAAAATAGGGCAAAGA
* * * *
65370 AAATATTTCAATGCAGAAGAAAATCATCAATGTCATTTATCCTAGTGAGGAGAATATGTTTATAG
258 AAAGATTTCCATGCA-AAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAG
* * * *
65435 TGCCTTATCACAAAAAGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACAAA
322 TGCCTAATCACAAAAACAACGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAAGCACAAA
* * * *
65500 CTTAGACTTTACAAAAATTAGCGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCCATATCATG
387 CTTAGACTTTACAAAAATTAGCGGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAACATCATG
*
65565 TATCATAATGCAGAGAATA-TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATAGTAGA
452 TATCATAATGCAGAGAA-AGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCAATAGTAGA
* * * * ** * *
65629 ATCCATGTTTGTCGCATTTGAGGCACGCTTAGACTTTACAAAAATTGGTGCGAAAAATGCCGTTC
516 ATCCATGTTTATCACATTCGAAGCAAACTTAGACTTTACAAAAATTGGTGAGAAAAATACCGTTC
* * * *
65694 TTGCAAAACCAAATATCAGTATCATGTATCCTAACAAGTAGACTTCA
581 TTGCAAAACAAAATATCAATATCATGTATCCTAACAAGAAAACTTCA
* * * * * *
65741 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAATGGGTATTCATGTTTGTCTTATTTAAA
1 TTTATAGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAG
* * * *
65806 AGAAAAACTTTGATCCTATAAAAAACG-GTGAAAAGAAAAGCTTTTCTTGCGACACCAGAGCATC
66 AGGAAAACTTTGATTCTATAAAAAACGAG-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * *
65870 AATGTCAT-TGATCATATTGAAGGGAATGTGCTTTGGCTTTCCAATCTTGAAAAAAAATGGAGAC
130 AATGTCGTGT-ATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAATCTTG--AAAAAATGGAGAT
* * * * * * * * * *
65934 TATAACGACAATCGATTCTTTCTTATTTATGAGATGAACTTTTATTTTAAGGAAACTAAGGCGAA
192 TGTTACGAGAATCGATGCTTTCTTATTTAAG-GGTGAACTTTCATTTTAAGGAAAATAGGGCAAA
*
65999 GAAAAGA-TTCCATGCAAGAGAAAATCATCAATATCATTTATCTTAGTGAGGAGAATGTGTTTAT
256 GAAAAGATTTCCATGCAA-AGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTAT
*
66063 TGTGCCTAATC
320 AGTGCCTAATC
66074 TGATGAAAAC
Statistics
Matches: 826, Mismatches: 122, Indels: 35
0.84 0.12 0.04
Matches are distributed among these distances:
629 1 0.00
630 64 0.08
631 222 0.27
632 66 0.08
633 7 0.01
634 453 0.55
635 13 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (627 bp):
TTTATAGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAG
AGGAAAACTTTGATTCTATAAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCGTGTATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAAATGGAGATTGTT
ACGAGAATCGATGCTTTCTTATTTAAGGGTGAACTTTCATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTCCATGCAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAAACAACGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAAGCACAAACTTA
GACTTTACAAAAATTAGCGGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAACATCATGTATC
ATAATGCAGAGAAAGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCAATAGTAGAATCCA
TGTTTATCACATTCGAAGCAAACTTAGACTTTACAAAAATTGGTGAGAAAAATACCGTTCTTGCA
AAACAAAATATCAATATCATGTATCCTAACAAGAAAACTTCA
Found at i:66950 original size:15 final size:15
Alignment explanation
Indices: 66912--66950 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
66902 TCAAGAATAC
66912 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
66927 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
66942 AAAAAAAAA
1 AAAAAAAAA
66951 CCAGTATTTG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:67380 original size:26 final size:26
Alignment explanation
Indices: 67351--67415 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
67341 AAAGCCAATT
67351 TTGAGTGAAACACGAGTGAACATCTA
1 TTGAGTGAAACACGAGTGAACATCTA
67377 TTGAGTGAAACACGAGTGAACATCTA
1 TTGAGTGAAACACGAGTGAACATCTA
67403 TTGAGTGAAACAC
1 TTGAGTGAAACAC
67416 TTAGCGAGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (26 bp):
TTGAGTGAAACACGAGTGAACATCTA
Found at i:67384 original size:15 final size:15
Alignment explanation
Indices: 67364--67411 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
67354 AGTGAAACAC
67364 GAGTGAACATCTATT
1 GAGTGAACATCTATT
*
67379 GAGTGAA-A-C-A-C
1 GAGTGAACATCTATT
67390 GAGTGAACATCTATT
1 GAGTGAACATCTATT
67405 GAGTGAA
1 GAGTGAA
67412 ACACTTAGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 7 0.26
12 2 0.07
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (15 bp):
GAGTGAACATCTATT
Found at i:67750 original size:42 final size:42
Alignment explanation
Indices: 67696--67818 Score: 176
Period size: 42 Copynumber: 2.9 Consensus size: 42
67686 AAGAGAAAGA
* *
67696 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
* *
67738 AGAGATATGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
* *
67780 AGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAGA-AGAT
1 AGAGAGAGGAGGGATGATAGGAGGA-GAGACAAGAGAGAT
67819 GGAAGAGTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 64 0.89
43 8 0.11
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
Found at i:73397 original size:158 final size:158
Alignment explanation
Indices: 73191--74165 Score: 635
Period size: 158 Copynumber: 6.2 Consensus size: 158
73181 AATATCATTC
* * * * * *
73191 ATCCTAAAGAGGAGAACGTGTTTATAGCACCTATTCACAAAAACAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAAAGAATGAAGATCATTACTAGAAT
* *
73256 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTA
66 CCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTC
*
73321 TTGTGAAACCAAAGCATCAACATCGTGT
131 TTGTGAAACCAAAGCATCAATATCGTGT
* *
73349 ATCCTAATGAGGAGAATGTGTTTATTA-CGCTTAATCACAAAATGAATGAAGATCATTAGTAGAA
1 ATCCTAATGAGGAGAATGTGTTTA-TAGCGCTTAATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * * *** *
73413 TCCATGTTTATCACATTCGAAGCTTAAACTTAGGCTTTAGAAAAATTGGTTAGAA-AAATACCTT
65 TCCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTATAAAAATTGGGGGGAAGAAA-GCCTT
* * ** * *
73477 TCTTGCGAAACTAAAATATTAATATCATGT
129 TCTTGTGAAACCAAAGCATCAATATCGTGT
* * * * * * ** ** *
73507 ATTCTAATGAGAAGACTTTGATTATAGTGCCAAATC-CTGAAAAA-AATGGGGAGT-AGTA-TGA
1 ATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCAC--AAAAAGAATGAAGA-TCATTACT-A
* * * ** * * * *
73568 GTATTCATGTTTGCCTTGTTTTAGAGG-A-AAACTTTGA-TTCTATAAAAAATGAGGGAAAGACA
62 GAATCCATGTTTGTC-TCATTT-GAGGCATAAACTTAGACTT-TATAAAAATTGGGGGGAAGA-A
* * *
73630 AGCTTTTCTTGTGACACCAAAGCATCAATGTCGTGT
123 AGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGT
* *** * *
73666 ATCCTAATGAAGAGAATGTGTTT-T-G-GCTTCCCAATCTTGAAAAGAATGGAGA-CTGTTA-TG
1 ATCCTAATGAGGAGAATGTGTTTATAGCGCTT---AATCACAAAAAGAATGAAGATC-ATTACT-
* * * * * * * * * * **
73726 AGAATCGATGCTTATCTTATTTAACGG-GTGAACTTTGA-TTT-TAAGGAAAATAGGGCAAAGAA
61 AGAATCCATGTTTGTCTCATTTGA-GGCATAAACTTAGACTTTATAA--AAATTGGGGGGAAG-A
* * ** ** * * *
73788 AAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTT
122 AAGCCTTT-CTTGTGAAACCAAAGCATCAATATCGTGT
* * * *
73825 ATCCTAGTGAGGAGAATATGTTTATAGAGCTTTATCACAAAAAGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAAAGAATGAAGATCATTACTAGAAT
* * * * *
73890 CCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTG
66 CCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTC
73955 TTGTGAAACCAAAGCATCAATATCGTGT
131 TTGTGAAACCAAAGCATCAATATCGTGT
* * * *
73983 ATCATAATGCA-GAGAATGTGTTTATAGTGCCTT-ATCACAAAAAGAATTAAGATCATTGCTAGA
1 ATCCTAATG-AGGAGAATGTGTTTATAGCG-CTTAATCACAAAAAGAATGAAGATCATTACTAGA
** * * * * * **
74046 ATCCATGTTTGT-TGCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGCAAAAAAAACT
64 ATCCATGTTTGTCT-CATTTGAGGCATAAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCT
** *
74110 TTCTTGTGAAACCAAAATATCAATAACGTGT
128 TTCTTGTGAAACCAAAGCATCAATATCGTGT
* *
74141 ATCCTAATAAGAAG-ATGTTGTTTAT
1 ATCCTAATGAGGAGAATG-TGTTTAT
74166 GGAGCCTAAT
Statistics
Matches: 618, Mismatches: 160, Indels: 78
0.72 0.19 0.09
Matches are distributed among these distances:
156 2 0.00
157 19 0.03
158 377 0.61
159 201 0.33
160 12 0.02
161 3 0.00
162 4 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
ATCCTAATGAGGAGAATGTGTTTATAGCGCTTAATCACAAAAAGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTC
TTGTGAAACCAAAGCATCAATATCGTGT
Found at i:73891 original size:634 final size:625
Alignment explanation
Indices: 72748--75221 Score: 2568
Period size: 634 Copynumber: 4.0 Consensus size: 625
72738 TGTCATCATA
* * *
72748 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTATG
1 ATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCGCA-TTGAAGCA-TAACTTA-G
* * * * * * *
72813 -CTTTACAAAAATT-GATGCAAAAAAAGCCTTTCTTGTGAAACCAAAATATCAATATCGTATTTC
63 ACTTTACAAAAATTGGTTGGAAAAATA-CCTTTCTTGCGAAACCAAAATATCAATATCATGTATC
* * ** ** * * **
72876 CTAATAAGAAGCCTTCATTTATGGTGCCTAA-CCTTGAAACGAATGAGGATAAGTACAAGTATTC
127 CTAATGAGAAGACTTTGTTTATGGTGCCTAATCC-TGAAAAAAATGGGGATTAGTATGAGTATTC
* * ** * * * ** * *
72940 ATATTTGTCTATTTCCAGA-CACAGACTTTGATTCTTTTTAAAACGGCAAAAAGAAAAGCTTTTC
191 ATGTTTGCCT-TTTTTAGAGGA-AAACTTTGATTCTATAAAAAATGG-AGAAAGAAAAGCTTTTC
** *** * * * *
73004 TTGCAATGGCAAAGCATCAATTTCGTGTATCCTAGTGAAGGGTATGTGTTTATGG-TTCCTAATC
253 TTGTGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATC
* * * * *
73068 TTGAAAGGAATAGAAACTGTTACGAGAATCGACGTTTGTCTT-TCTTAAGGGATGAACTTTGATT
317 TTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTAT-TTAAGGGATGAACTTTGATT
* ** * * *
73132 TTAAGGAAAATAGGACAAAGAAAAGATTTCCACACAAAAGAAGATCATTAATATCATTCATCCTA
381 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
** * *
73197 AAGAGGAGAACGTGTTTATAGCA-CC-TATTCACAAAAACAATGAAGATCATTACTAGAATCCAT
446 GTGAGGAGAATGTGTTTATAG-AGCCTTA-TCACAAAAAGAATGAAGATCATTACTAGAATCCAT
** * * *
73260 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTATTGT
509 GTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTGTTGT
*
73325 GAAACCAAAGCATCAACATCGTGTATCCTAATGAGGAGAATGTGTTTATTACGCTT
574 GAAACCAAAG-ATCAATATCGTGTATCCTAATGA-GAGAATGTGTTTA-TA-GCTT
* * *
73381 AATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTATCACATTCGAAGCTTAAACTTAG
1 -ATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCGCATT-GAAGCAT-AACTTAG
* * * * * *
73446 GCTTTAGAAAAATTGGTTAGAAAAATACCTTTCTTGCGAAACTAAAATATTAATATCATGTATTC
63 ACTTTACAAAAATTGGTTGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCATGTATCC
* * * *
73511 TAATGAGAAGACTTTGATTATAGTGCCAAATCCTGAAAAAAATGGGGAGTAGTATGAGTATTCAT
128 TAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAT
* *
73576 GTTTGCCTTGTTTTAGAGGAAAACTTTGATTCTATAAAAAATGAGGGAAAGACAAGCTTTTCTTG
193 GTTTGCCTT-TTTTAGAGGAAAACTTTGATTCTATAAAAAATG-GAGAAAGAAAAGCTTTTCTTG
*
73641 TGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTTGA
256 TGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGA
* *
73706 AAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTTAACGGG-TGAACTTTGATTTTAA
321 AAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGGATGAACTTTGATTTTAA
73770 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGA
385 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGA
* *
73835 GGAGAATATGTTTATAGAGCTTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGT
450 GGAGAATGTGTTTATAGAGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGT
* * *
73900 CTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTGTTGTGAAACC
515 CTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTGTTGTGAAACC
*
73965 AAAGCATCAATATCGTGTATCATAATGCAGAGAATGTGTTTATAGTGCCTT
580 AAAG-ATCAATATCGTGTATCCTAATG-AGAGAATGTGTTTATA--G-CTT
* * * * * *
74016 ATCACAAAAAGAATTAAGATCATT-GCTAGAATCCATGTTTGTTGCATTTGAGGCACGAACTTAA
1 ATCACAAAATGAATGAAGATCATTAG-TAGAATCCATGTTTGTCGCA-TTGAAGCA-TAACTTAG
* * * * *
74080 ACTTTACAAAAATTGG-TGGCAAAAAAAACTTTCTTGTGAAACCAAAATATCAATAACGTGTATC
63 ACTTTACAAAAATTGGTTGG-AAAAATACCTTTCTTGCGAAACCAAAATATCAATATCATGTATC
* * * * *
74144 CTAATAAGAAGA-TGTTGTTTATGGAGCCTAATCCT-AAAACATTGGGGATTAGTATGACTATTC
127 CTAATGAGAAGACT-TTGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTC
* * *
74207 ATGTTTGCCTTATTTTAGAGGCAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGTTTTTCT
191 ATGTTTGCCTT-TTTTAGAGGAAAACTTTGATTCTATAAAAAATGG-AGAAAGAAAAGCTTTTCT
* * * * * *
74272 TGTGACA-CAAATCATCAGTGTCAG-GTATCCTAATGAAGGGTACGTGTTTTTGCTTCCCAATAT
254 TGTGACACCAAAGCATCAATGTC-GTGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT
* * *
74335 TGAAAAGACTGGAGAGTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTT
318 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
74400 AAGGAAAATAGGGGAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCT-GA
383 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAG-
* * * * * * * *
74464 TGTA-AAGAATGTTTTTATAGTGCCTTATCCCAAAAAGAATGAAGATTACTGCTAGAATCCAAGT
447 TG-AGGAGAATGTGTTTATAGAGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGT
* * * ** * *
74528 TTGTCTTATTGGAGGCACGAACTTAGACTTTACAAAAATTGATGGAAAAAAAG---TCGTTGATG
511 TTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTGTTG-TG
* * *
74590 ----CAAA-ACCAA-AAC----AT-C-AAT------AT-CG----T-GC--
575 AAACCAAAGATCAATATCGTGTATCCTAATGAGAGAATGTGTTTATAGCTT
* * * **
74615 ATC-C-TAATGAATGAAGATCATTAGTAGAATCCATGTTTGCCGCATTTAAGGCATGGCTTAGAC
1 ATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCGCATTGAA-GCATAACTTAGAC
* * *
74678 TTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATCAGTATCATGTATCCTA
65 TTTACAAAAATTGGTTGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCATGTATCCTA
* * * * *
74743 ATGAGAAGACTTTGTTTACGGTGCCTAATCCTGAGAAAAATAGGGATTAGAATGGGTATTCATGT
130 ATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCATGT
* * * * * * * *
74808 TTGTCTTATTTAAAAGACAAACTTTGATCCTATAAAAAATGGTGAAAGAAAAGCTTTTCTTGCGG
195 TTGCCTTTTTTAGAGGA-AAACTTTGATTCTATAAAAAATGGAGAAAGAAAAGCTTTTCTTGTGA
* * * * *
74873 CACCAAAGCATCAATGTCATGGATCATATTGAAGGGAATGTGCTTTGGCTTCCCAATCTTGAAAA
259 CACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAA
** * * * * * *
74938 GAATGGAGACTGCAACGATAATCGATTCCT-TCTTATTTATGAGATGAACTTTTATTTTAAGGAA
324 GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * *
75002 ACTAAGGCAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAATATCCTTTATCCTAGTGAAGAG
389 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAG
* * * * *
75066 AATGTGTTAACT-GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCGC
454 AATGTGTTTA-TAGAGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * *
75130 ATTTGAGGCACAAACTTAGACTTTACAAAAATT-GGTGGAAAAAATGCCTTTCTTGTCAAACCAA
518 ATTTGAGGCACAAACTTAGACTTTACAAAAATTGGGGGGAAAAAA-GCCTTTGTTGTGAAACC-A
* *
75194 AAGATCAATATCGTATTTCCTAATGAGA
581 AAGATCAATATCGTGTATCCTAATGAGA
75222 AGTCTTCATT
Statistics
Matches: 1538, Mismatches: 243, Indels: 138
0.80 0.13 0.07
Matches are distributed among these distances:
594 8 0.01
595 122 0.08
596 165 0.11
597 167 0.11
598 6 0.00
599 3 0.00
601 2 0.00
602 4 0.00
603 4 0.00
604 2 0.00
605 1 0.00
608 1 0.00
609 2 0.00
610 5 0.00
617 3 0.00
619 2 0.00
623 2 0.00
624 4 0.00
626 4 0.00
629 5 0.00
630 2 0.00
631 4 0.00
632 262 0.17
633 104 0.07
634 630 0.41
635 24 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (625 bp):
ATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCGCATTGAAGCATAACTTAGACT
TTACAAAAATTGGTTGGAAAAATACCTTTCTTGCGAAACCAAAATATCAATATCATGTATCCTAA
TGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCATGTT
TGCCTTTTTTAGAGGAAAACTTTGATTCTATAAAAAATGGAGAAAGAAAAGCTTTTCTTGTGACA
CCAAAGCATCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAA
TGTGTTTATAGAGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
TGAGGCACAAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTGTTGTGAAACCAAAGAT
CAATATCGTGTATCCTAATGAGAGAATGTGTTTATAGCTT
Found at i:75877 original size:475 final size:476
Alignment explanation
Indices: 74623--76168 Score: 1692
Period size: 475 Copynumber: 3.3 Consensus size: 476
74613 GCATCCTAAT
* * * ***
74623 GAATGAAGATCATTAGTAGAATCCATGTTTGCCGCATTTAAGGCA-TGGCTTAGACTTTACAAAA
1 GAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAA
* * * *
74687 ATTGGTGGGAA-AAATGCCTTTCTTGCGAAACCAAAA-TATCAGTATCATGTATCCTAATGAGAA
66 ATTAG-GGGAAGAAATGCCTTTCTTGCGAAACCAAAAGCATCAATATCGTGTATCCTAATGAGAA
* * * * *
74750 GACTTTGTTTACGGTGCCTAATCCT-GAGAAA-AATAGGGATTAGAATGGGTATTCATGTTTGTC
130 GACTTAGTTTATGGTGCCTAATCCTAGA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * **
74813 TTATTTAAAAGACAAACTTTGATCCTATAAAAAATGG-TGAAAGAAAAGCTTTTCTTGCGGCACC
194 TTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGAAGAAAGAAAAGCTTTTCTTGCAACACC
* * * * *
74877 AAAGCATCAATGTCATGGATCATATTGAAGGGAATGTGCTTTGGCTTCCCAATCTTGAAAAGAAT
259 AAAGCATCAATGTCGTGTATCATAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAAT
*** * * * * * * *
74942 GGAGACTGCAACGATAA-T--CGATTCCTTCTTATTTATGAGATGAACTTTTATTTTAAGGAAAC
324 GGAGACTATTATGAGAATTGACGATTCC-T-TT-TTTAAGGGATGAACGTTCATTTTAAGGAAAA
* * ** *
75004 TAAGGCAAAGAAAAGA--TTCCATGCAAAAGAAAATCATCAATATCCTTTATCCTAGTGAAGAGA
386 TAGGGCAAAGAAAAGATTTTCC-TGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGA
*
75067 ATGTGTTA-ACTGTGCCTAATCACAAAAT
450 ATGTGTTATA--GTGCCTAATCACAAAAA
75095 GAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAA
1 GAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAA
* * *
75160 ATT-GGTGGAAAAAATGCCTTTCTTGTC-AAACCAAAAG-ATCAATATCGTATTTCCTAATGAGA
66 ATTAGG-GGAAGAAATGCCTTTCTTG-CGAAACCAAAAGCATCAATATCGTGTATCCTAATGAGA
* * * * *
75222 AGTCTTCA-TTTATGGTGCCTAATCCTA-AAATGAATGAGGATAAGTATGAGTATTCGTGTTTGT
129 AGACTT-AGTTTATGGTGCCTAATCCTAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
75285 C-TATTTTAAGAGACAGACTTTGATTCTATTAAAAAC-GACAGAAAGAAAAGCTTTTCTTGCAAT
193 CTTA-TTTAAGAGACAAACTTTGATTCTATAAAAAACGGA-AGAAAGAAAAGCTTTTCTTGCAAC
** * * * ** * *
75348 AGTAAAGCATCAATTTTGTGTATCCTAGCGTAGGGTATGTGTTTTTGG-TTCCCAATCTTGAAAG
256 ACCAAAGCATCAATGTCGTGTATCATAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAG
* * *
75412 GAATAGAGACTATTATGAGAATTGACGTTTGCCTTTTTTAAGGGATGAACGTTGATTTTAAGGAA
320 GAATGGAGACTATTATGAGAATTGACGATT-CCTTTTTTAAGGGATGAACGTTCATTTTAAGGAA
* * *
75477 AATAGGGCAAAGAAAAGATTTTCCTGCAAAAGAAGATCATCGATATCATTCATCCTAAAGAGGAG
384 AATAGGGCAAAGAAAAGATTTTCCTGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAG
* *
75542 AATGTGTATATAGCGCTTAATCACAAAAA
449 AATGTGT-TATAGTGCCTAATCACAAAAA
* * * * *
75571 CAACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAA
1 GAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAA
* * *
75636 ATTAAGGGGAAGAAA-GCCTTTGTTGCGAAACC-AACGCATCAATATCGTGTATCCTAATAAGAA
66 ATT-AGGGGAAGAAATGCCTTTCTTGCGAAACCAAAAGCATCAATATCGTGTATCCTAATGAGAA
* * *
75699 GAC-TAGTTTATGGTGCCTAAT-CTAGAAAAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCCT
130 GACTTAGTTTATGGTGCCTAATCCTAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
*
75762 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAAGAAAGAACAA-CTTTTCTTGCAACACC
195 TATTTAAGAGACAAACTTTGATTCTATAAAAAACGGAAGAAAGAA-AAGCTTTTCTTGCAACACC
* * * * *
75826 AAAGCATTAATGTCGTGTATCATAATGAAAGCAATGTGTTTTGGCTTCCCAATCTAGAAAGAAAT
259 AAAGCATCAATGTCGTGTATCATAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAAT
* * * * * * *
75891 GGAGACTATTATGAGAATCGATGCTTATCTTATTCAAGGGATGAA-GTTTCATGTTAAGGAAAAT
324 GGAGACTATTATGAGAATTGACGATT-CCTTTTTTAAGGGATGAACG-TTCATTTTAAGGAAAAT
* * * * *
75955 AGGGCAAAGAAAAGATTTTCATGCAATAGAAAATCATAAATGTTATTTATCC-AAATGAGGAGAA
387 AGGGCAAAGAAAAGATTTTCCTGCAAAAGAAAATCATCAATATCATTTATCCTAAA-GAGGAGAA
* *
76019 TGTGTTTATAATGCCTAATCCCAAAAA
451 TGTG-TTATAGTGCCTAATCACAAAAA
* * **
76046 GAATAAAGATCAATACTAGAATCCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAA
1 GAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAA
* * * * *
76111 ATTGATGGGAAGAAA-GCCTTTGTTGCAAAACC-GAAGCATCAACATCGTGTATCCTAAT
66 ATT-AGGGGAAGAAATGCCTTTCTTGCGAAACCAAAAGCATCAATATCGTGTATCCTAAT
76169 TAGGAAAATG
Statistics
Matches: 906, Mismatches: 135, Indels: 63
0.82 0.12 0.06
Matches are distributed among these distances:
471 1 0.00
472 52 0.06
473 139 0.15
474 95 0.10
475 430 0.47
476 166 0.18
477 18 0.02
478 5 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (476 bp):
GAATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAA
ATTAGGGGAAGAAATGCCTTTCTTGCGAAACCAAAAGCATCAATATCGTGTATCCTAATGAGAAG
ACTTAGTTTATGGTGCCTAATCCTAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATAAAAAACGGAAGAAAGAAAAGCTTTTCTTGCAACACCAA
AGCATCAATGTCGTGTATCATAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAATGG
AGACTATTATGAGAATTGACGATTCCTTTTTTAAGGGATGAACGTTCATTTTAAGGAAAATAGGG
CAAAGAAAAGATTTTCCTGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGT
TATAGTGCCTAATCACAAAAA
Found at i:76343 original size:158 final size:158
Alignment explanation
Indices: 76008--76329 Score: 358
Period size: 158 Copynumber: 2.0 Consensus size: 158
75998 TATTTATCCA
* * * * ** * **
76008 AATGAGGAGAATGTGTTTATAATGCCTAATCCCAAAAAGAATAAAGATCAATACTAGAATCCATG
1 AATGAGGAAAATGTATTTATAGTACCTAATCATAAAATGAACGAAGATCAATACTAGAATCCATG
** ** * * *
76073 TTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCA
66 TTTGTCGCATTTGACCCACAAACTGAGACTTTACAAAAATTGATGAGAAGAAAGCCTTTCTTGCA
* * * *
76138 AAACCGAAGCATCAACATCGTGTATCCT
131 AAACCAAAACATCAACATCGTGAAACCT
* * *
76166 AATTAGGAAAATGTATTTATAGTACCTAATCATAAAATGAACGAAGATCATTAGTAGAATCCATG
1 AATGAGGAAAATGTATTTATAGTACCTAATCATAAAATGAACGAAGATCAATACTAGAATCCATG
* *
76231 TTTGTCGCATTTGACCCACGAACTGAGACTTTACAAAAATTGGTGAGAA-AAATGCCTTTCTTGC
66 TTTGTCGCATTTGACCCACAAACTGAGACTTTACAAAAATTGATGAGAAGAAA-GCCTTTCTTGC
* * * * *
76295 GAAGCCAAAATATCAATATTGTGAAACCT
130 AAAACCAAAACATCAACATCGTGAAACCT
76324 AATGAG
1 AATGAG
76330 AAGACTTCAT
Statistics
Matches: 132, Mismatches: 31, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
157 3 0.02
158 129 0.98
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (158 bp):
AATGAGGAAAATGTATTTATAGTACCTAATCATAAAATGAACGAAGATCAATACTAGAATCCATG
TTTGTCGCATTTGACCCACAAACTGAGACTTTACAAAAATTGATGAGAAGAAAGCCTTTCTTGCA
AAACCAAAACATCAACATCGTGAAACCT
Found at i:76354 original size:475 final size:474
Alignment explanation
Indices: 74980--76360 Score: 1068
Period size: 475 Copynumber: 2.9 Consensus size: 474
74970 TTATTTATGA
* * * * * * *
74980 GATGAACTTTTATTTTAAGGAAACTAAGGCAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAA
1 GATGAACGTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATAAA
* * ** * ** **
75044 TATCCTTTATCCTAGTGAAGAGAATGTG--T-TAACTGTGCCTAATCACAAAATGAATGAAGATC
66 TATCATTCATCCTAAAGAGGAGAATGTGTATATAAC---GCCTAATCACAAAAACAACAAAGATC
* *
75106 ATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAAATT--GGTGGA
128 AATACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAAGG-GGA
* * * * * * * **
75169 AAAAATGCCTTTCTTGTC-AAACCAAAAG-ATCAATATCGTATTTCCTAATGAGAAGTCTTCA-T
192 AGAAA-GCCTTTGTTG-CAAAACC-AACGCATCAACATCGTGTATCCTAATAAGAAAAC-T-AGT
* * * * * * * * * * * *
75231 TTATGGTGCCTAATCCTA-AAATGAATGAGGATAAGTATGAGTATTCGTGTTTGTC-TATTTTAA
252 TTATAGTACCTAAT-CTAGAAAAGAACGAAGATCAGTGTGAGAATCCATGTTTGCCGCA-TTTAA
* * * ** * * * ** *
75294 GAGACAGACTTTGATTCTATTAAAAAC-GACAGAAAGAA-AAGCTTTTCTTGCAATAGTAAAGCA
315 CACACAAACTGAGATTCTATCAAAAACGGA-AGAAAGAACAA-CCTTTCTTGCAACACCAAAACA
* * * * * ** * * ** * *
75357 TCAATTTTGTGTATCCTAGCGTAGGGTATGTGTTTTTGGTTCCCAATCTTGAAAGGAATAGAGAC
378 TCAATATCGTGAAACATAATGAAAGCAATGT-ATTTTGGTTCCCAATCTTGAAAGAAATAGAGAC
* * * * *
75422 TATTATGAGAATTGACGTTTGCCTTTTTTAAGG
442 TATTATGAGAATCGACGCTTACCTTATTCAAGG
* * * * **
75455 GATGAACGTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCCTGCAAAAGAAGATCATCGA
1 GATGAACGTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATAAA
* * * *
75520 TATCATTCATCCTAAAGAGGAGAATGTGTATATAGCGCTTAATCACAAAAACAACGAAGATCATT
66 TATCATTCATCCTAAAGAGGAGAATGTGTATATAACGCCTAATCACAAAAACAACAAAGATCAAT
* *
75585 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTAAGGGGAAGAA
131 ACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAAGGGGAAGAA
* * * * *
75650 AGCCTTTGTTGCGAAACCAACGCATCAATATCGTGTATCCTAATAAGAAGACTAGTTTATGGTGC
196 AGCCTTTGTTGCAAAACCAACGCATCAACATCGTGTATCCTAATAAGAAAACTAGTTTATAGTAC
* ** * * * * ** * * *
75715 CTAATCTAGAAAAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCCTTATTTAAGAGACAAACTT
261 CTAATCTAGAAAAGAACGAAGATCAGTGTGAGAATCCATGTTTGCCGCATTTAACACACAAACTG
* * * * * *
75780 TGATTCTATCAAAAACGGAAGAAAGAACAACTTTTCTTGCAACACCAAAGCATTAATGTCGTGTA
326 AGATTCTATCAAAAACGGAAGAAAGAACAACCTTTCTTGCAACACCAAAACATCAATATCGTGAA
* * * *
75845 TCATAATGAAAGCAATGTGTTTTGGCTTCCCAATCTAGAAAGAAATGGAGACTATTATGAGAATC
391 ACATAATGAAAGCAATGTATTTTGG-TTCCCAATCTTGAAAGAAATAGAGACTATTATGAGAATC
* *
75910 GATGCTTATCTTATTCAAGG
455 GACGCTTACCTTATTCAAGG
*
75930 GATGAA-GTTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAATAGAAAATCATAA
1 GATGAACG-TTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATAA
* * * * * * * *
75994 ATGTTATTTATCC-AAATGAGGAGAATGTGTTTATAATGCCTAATCCCAAAAAGAATAAAGATCA
65 ATATCATTCATCCTAAA-GAGGAGAATGTGTATATAACGCCTAATCACAAAAACAACAAAGATCA
* * *
76058 ATACTAGAATCCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAG
129 ATACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAAGGGGAAG
* *
76123 AAAGCCTTTGTTGCAAAACCGAA-GCATCAACATCGTGTATCCTAATTAGGAAAATGTA-TTTAT
194 AAAGCCTTTGTTGCAAAACC-AACGCATCAACATCGTGTATCCTAA-TAAGAAAA-CTAGTTTAT
* * * * *
76186 AGTACCTAATCATA-AAATGAACGAAGATCATTAGT-AGAATCCATGTTTGTCGCATTTGACCCA
256 AGTACCTAATC-TAGAAAAGAACGAAGATCAGT-GTGAGAATCCATGTTTGCCGCATTTAACACA
* * * ** * *
76249 CGAACTGAGACTT-TA-CAAAAATTGGTGAGAAA-AA-TGCCTTTCTTGCGAA-GCCAAAATATC
319 CAAACTGAGA-TTCTATCAAAAA-CGG-AAGAAAGAACAACCTTTCTTGC-AACACCAAAACATC
* * * *
76309 AATATTGTGAAACCTAATGAGAAG-ACT-TCATTTATGGTGCCCAATCTTGAAA
380 AATATCGTGAAACATAATGA-AAGCAATGT-ATTT-TGGTTCCCAATCTTGAAA
76361 AGAATGGGGA
Statistics
Matches: 750, Mismatches: 128, Indels: 56
0.80 0.14 0.06
Matches are distributed among these distances:
474 15 0.02
475 472 0.63
476 237 0.32
477 20 0.03
478 3 0.00
479 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (474 bp):
GATGAACGTTCATGTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATAAA
TATCATTCATCCTAAAGAGGAGAATGTGTATATAACGCCTAATCACAAAAACAACAAAGATCAAT
ACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAAGGGGAAGAA
AGCCTTTGTTGCAAAACCAACGCATCAACATCGTGTATCCTAATAAGAAAACTAGTTTATAGTAC
CTAATCTAGAAAAGAACGAAGATCAGTGTGAGAATCCATGTTTGCCGCATTTAACACACAAACTG
AGATTCTATCAAAAACGGAAGAAAGAACAACCTTTCTTGCAACACCAAAACATCAATATCGTGAA
ACATAATGAAAGCAATGTATTTTGGTTCCCAATCTTGAAAGAAATAGAGACTATTATGAGAATCG
ACGCTTACCTTATTCAAGG
Found at i:76539 original size:634 final size:632
Alignment explanation
Indices: 75572--76802 Score: 1702
Period size: 634 Copynumber: 1.9 Consensus size: 632
75562 TCACAAAAAC
* ** * *
75572 AACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAA
1 AACGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGACCCACGAACTGAGACTTTACAAAAA
* ** * *
75637 TTAAGGGGAAGAAAGCCTTTGTTGCGAAACCAACGCATCAATATCGTGTATCCTAATAAGAAGAC
66 TT-AGGGGAAGAAAGCCTTTCTTGCGAAACCAAAACATCAATATCGTGAAACCTAATAAGAAGAC
* ** **
75702 TAGTTTATGGTGCCTAATCTAGAAAAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCCTTATTT
130 TAGTTTATGGTGCCCAATCTAGAAAAGAATGGGGATTAGCATGAGTATTCAAGTTTGCCTTATTT
*
75767 AAGAGACAAACTTTGATTCTATCAAAAACGGAAGAAAGAACAACTTTTCTTGCAACACCAAAGCA
195 AAGAGACAAACTTTGATTCTATAAAAAACGGAAGAAAGAACAACTTTTCTTGCAACACCAAAGCA
* * * *
75832 TTAATGTCGTGTATCATAATGAAAGCAATGTGTTTTGGCTTCCCAATCTAGAAAGAAATGGAGAC
260 TCAACGTCATGTATCATAATGAAAGCAATGTGTTTTGGCTTCCCAATCTAGAAAGAAATAGAGAC
** *
75897 TATTATGAGAATCGATGCTTATCTTATTCAAGGGATGAAGTTTCATGTTAAGGAAAATAGGGCAA
325 TATTATGAGAATCGATGCTTATCTTATTCAAGAAATGAACTTTCATGTTAAGGAAAATAGGGCAA
* * *
75962 AGAAAAGATTTTCATGCAATAGAAAATCATAAATGTTATTTATCCAAATGAGGAGAATGTGTTTA
390 AGAAAAGATTTTCATGCAAAAGAAAATCATAAATATCATTTATCCAAATGAGGAGAATGTGTTTA
* * *
76027 TAATGCCTAATCCCAAAAAGAATAAAGATCAATACTAGAATCCATGTTTGTCT-TATTTGAGGCA
455 TAATGCCTAAACCCAAAAAGAATAAAGATCAATACTAGAATCCAAGTTTGTCTCT-TTTAAGGCA
*
76091 CAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCAAAACCGAAGCATCAACAT
519 CAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAACAT
* *
76156 CGTGTATCCTAATTAGGAAAATGTATTTATAGTACCTAATCATAAAATG
584 CCTATATCCTAATTAGGAAAATGTATTTATAGTACCTAATCATAAAATG
*
76205 AACGAAGATCATTAGTAGAATCCATGTTTGTCGCATTTGACCCACGAACTGAGACTTTACAAAAA
1 AACGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGACCCACGAACTGAGACTTTACAAAAA
* * * *
76270 TT-GGTGAGAA-AAATGCCTTTCTTGCGAAGCCAAAATATCAATATTGTGAAACCTAATGAGAAG
66 TTAGG-G-GAAGAAA-GCCTTTCTTGCGAAACCAAAACATCAATATCGTGAAACCTAATAAGAAG
* * **
76333 ACTTCA-TTTATGGTGCCCAATCTTGAAAAGAATGGGGATTTGCATGAGTATTCAAGTTTGTTTT
128 AC-T-AGTTTATGGTGCCCAATCTAGAAAAGAATGGGGATTAGCATGAGTATTCAAGTTTGCCTT
** * **
76397 ATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAA-AAGCTTTTTTTGCGGCACCA
191 ATTTAAGAGACAAACTTTGATTCTATAAAAAACGGAAGAAAGAACAA-CTTTTCTTGCAACACCA
* * * * *
76461 AAGCATCAACGTCATTTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA-AGAAT
255 AAGCATCAACGTCATGTATCATAATGAAAGCAATGTGTTTTGGCTTCCCAATCTAGAAAGA-AAT
* * * * *
76525 AGAG-CTTGTTATGAGAATCGATGCTTCTCTTATTTAAGAAATGAACTTTGATTTTAAGGAAAAT
319 AGAGAC-TATTATGAGAATCGATGCTTATCTTATTCAAGAAATGAACTTTCATGTTAAGGAAAAT
* * * * *
76589 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGATGTGAAT
383 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATAAATATCATTTATCCAAATGAGGAGAAT
* * * *
76654 GTGTTTATTATGCCTAAACCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTT
448 GTGTTTATAATGCCTAAACCCAAAAAGAATAAAGATCAATACTAGAATCCAAGTTTGTCTCTTTT
* * *
76719 AAGGCACGAACTTAGACTTTAGAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCAT
513 AAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCAT
*
76784 CAATATCCTATATCCTAAT
578 CAACATCCTATATCCTAAT
76803 GAGAAGACTA
Statistics
Matches: 520, Mismatches: 69, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
631 2 0.00
632 4 0.01
633 110 0.21
634 402 0.77
635 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (632 bp):
AACGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGACCCACGAACTGAGACTTTACAAAAA
TTAGGGGAAGAAAGCCTTTCTTGCGAAACCAAAACATCAATATCGTGAAACCTAATAAGAAGACT
AGTTTATGGTGCCCAATCTAGAAAAGAATGGGGATTAGCATGAGTATTCAAGTTTGCCTTATTTA
AGAGACAAACTTTGATTCTATAAAAAACGGAAGAAAGAACAACTTTTCTTGCAACACCAAAGCAT
CAACGTCATGTATCATAATGAAAGCAATGTGTTTTGGCTTCCCAATCTAGAAAGAAATAGAGACT
ATTATGAGAATCGATGCTTATCTTATTCAAGAAATGAACTTTCATGTTAAGGAAAATAGGGCAAA
GAAAAGATTTTCATGCAAAAGAAAATCATAAATATCATTTATCCAAATGAGGAGAATGTGTTTAT
AATGCCTAAACCCAAAAAGAATAAAGATCAATACTAGAATCCAAGTTTGTCTCTTTTAAGGCACA
AACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAACATCC
TATATCCTAATTAGGAAAATGTATTTATAGTACCTAATCATAAAATG
Found at i:76822 original size:476 final size:475
Alignment explanation
Indices: 76147--77137 Score: 1176
Period size: 476 Copynumber: 2.1 Consensus size: 475
76137 AAAACCGAAG
* * * * * * * **
76147 CATCAACATCGTGTATCCTAATTAGGAAAATGTATTTA-TAGTACCTAATCATAAAATGAACGAA
1 CATCAACATCATGAATCCTAATGAGGAGAATGTGTTTATTA-TGCCTAAACCCAAAATGAACGAA
* * *
76211 GATCATTAGTAGAATCCATGTTTGTCGCATTTGACCCACGAACTGAGACTTTACAAAAATTGGTG
65 GATCATTACTAGAATCCAAGTTTGTCGCATTTAACCCACGAACTGAGACTTTACAAAAATTGGTG
* * * **
76276 AGAAAAATGCCTTTCTTGCGAAGCCAAAATATCAATATTGTGAAACCTAATGAGAAGACTTCATT
130 AGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCCTGAAACCTAATGAGAAGACTTCATT
* ** * * *
76341 TATGGTGCCCAATCTTGAAAAGAATGGGGATTTGCATGAGTATTCAAGTTTGTTTTATTTAAGAG
195 TATGGTGCACAATCCCGAAAAGAATGGCGATTAGCATGAGTATTCAAGTTTGTCTTATTTAAGAG
* * * **
76406 ACAAACTTTGATTCTATAAAAAACGGTGGAAAGA-AAAGCTTTTTTTGCGGCACCAAAGCATCAA
260 ACAAACTTTGATTCTATAAAAAACGATAGAAAGACAAA-CTTTTCTTGCAACACCAAAGCATCAA
*
76470 CGTC-ATTTATCCTAATGAAGGGAATG-TGTTTTGGCTTCCCAATCTTGAAAAGAATAGAG-CTT
324 CGTCGA-GTATCCTAATGAAGGGAATGAT-TTTTGGC-TCCCAATCTTGAAAAGAATAGAGAC-T
* * * *
76532 GTTATGAGAATCGATGCTTCTC-TTATT-TAAGAAATGAACTTTGATTTTAAGGAAAATAGGGCA
385 ATTACGAGAATCGATGCTTCTCATT-TTGAAAG-AATGAACTTTGATATTAAGGAAAATAGGGCA
* **
76595 AAGAAAAGATTTTCA-TGCAAAAGAAAAT
448 AAGAAAACATTTTCACACCAAAA-AAAAT
* ** * * * *
76623 CATCAATATCATTTATCCTAGTGATGTGAATGTGTTTATTATGCCTAAACCCAAAATGAATGAAG
1 CATCAACATCATGAATCCTAATGAGGAGAATGTGTTTATTATGCCTAAACCCAAAATGAACGAAG
* * ** * * *
76688 ATCATTACTAGAATCCAAGTTTGTCTCTTTTAAGGCACGAACTTAGACTTTAGAAAAATTGGTGG
66 ATCATTACTAGAATCCAAGTTTGTCGCATTTAACCCACGAACTGAGACTTTACAAAAATTGGTGA
* * * *
76753 GAAGAAA-GCCTTTGTTGCAAAACCAAAGCATCAATATCCT-ATATCCTAATGAGAAGACTAT-G
131 GAA-AAATGCCTTTCTTGCAAAACCAAAACATCAATATCCTGA-AACCTAATGAGAAGACT-TCA
* * ** *
76815 TTTATGGTGCATAATCCCGAAAAGATTGGCGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAG
193 TTTATGGTGCACAATCCCGAAAAGAATGGCGATTAGCATGAGTATTCAAGTTTGTCTTATTTAAG
* **
76880 AGACAAACTTTGATTCTATCAAAAACGATAGAATTACAAACTTTTCTTGCAACACCAAAGCATCA
258 AGACAAACTTTGATTCTATAAAAAACGATAGAAAGACAAACTTTTCTTGCAACACCAAAGCATCA
* * * *
76945 ATGTCGAGTATCCTAATGAAGGGTATGCATTTTTGGCTCCTAATCTTGAAAGGAATAGAGACTAT
323 ACGTCGAGTATCCTAATGAAGGGAATG-ATTTTTGGCTCCCAATCTTGAAAAGAATAGAGACTAT
* *
77010 TACGAGAATCGATGCTTGTCATTTTGAAAGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGA
387 TACGAGAATCGATGCTTCTCATTTTGAAAGAATGAACTTTGATATTAAGGAAAATAGGGCAAAGA
77075 AAACATTTTCACACCAAAAAAAAT
452 AAACATTTTCACACCAAAAAAAAT
77099 CATCAACATCATGAATCCTAATGAGGAGAATGTGTTTAT
1 CATCAACATCATGAATCCTAATGAGGAGAATGTGTTTAT
77138 AGCACCTAAT
Statistics
Matches: 431, Mismatches: 72, Indels: 24
0.82 0.14 0.05
Matches are distributed among these distances:
475 1 0.00
476 401 0.93
477 28 0.06
478 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
CATCAACATCATGAATCCTAATGAGGAGAATGTGTTTATTATGCCTAAACCCAAAATGAACGAAG
ATCATTACTAGAATCCAAGTTTGTCGCATTTAACCCACGAACTGAGACTTTACAAAAATTGGTGA
GAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCCTGAAACCTAATGAGAAGACTTCATTT
ATGGTGCACAATCCCGAAAAGAATGGCGATTAGCATGAGTATTCAAGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATAAAAAACGATAGAAAGACAAACTTTTCTTGCAACACCAAAGCATCAACG
TCGAGTATCCTAATGAAGGGAATGATTTTTGGCTCCCAATCTTGAAAAGAATAGAGACTATTACG
AGAATCGATGCTTCTCATTTTGAAAGAATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAC
ATTTTCACACCAAAAAAAAT
Found at i:77540 original size:409 final size:409
Alignment explanation
Indices: 76772--77546 Score: 1044
Period size: 409 Copynumber: 1.9 Consensus size: 409
76762 CTTTGTTGCA
* *
76772 AAACCAAAGCATCAATATCCTATATCCTAATGAGAAGACTATGTTTATGGTGCATAATCCCGAAA
1 AAACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATAGTGCATAATCCCGAAA
*
76837 AGATTGGCGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
66 AGAATGGCGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
** *
76902 AAACGATAGAATTACAAACTTTTCTTGCAACACCAAAGCATCAATGTCGAGTATCCTAATGAAGG
131 AAACGATAGAAAGACAAACTTTTCTTGCAACACCAAAGCATCAATGTCGAGTATCCTAATAAAGG
* * *
76967 GTATGCATTTTTGGCTCCTAATCTTGAAAGGAATAGAGACTATTACGAGAATCGATGCTTGTCAT
196 GCATG-ATTTTTGGCTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCAT
* *
77032 TTTGAAAGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAACATTTTCACACCAAAAAAA
260 TTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAGAAAACATTTCCACACCAAAAAAA
*
77097 ATCATCAACATCATGAATCCTAATGAGGAGAATGTGTTTATAGCACCTAATCGCAAAAAGAATGA
325 ATCATCAACATCATGAATCCTAATAAGGAGAATGTGTTTATAGCACCTAATCGCAAAAAGAATGA
77162 CGGCGGAAACCTTTGCTGTG
390 CGGCGGAAACCTTTGCTGTG
* * * *
77182 AAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAA
1 AAACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATAGTGCATAATCCCGAAA
* *
77247 AGAATGGGGA-TA-TGTGCAAGTATTCATGTTTGTCTTATTTAATAGACAAACTTTGATTCTATC
66 AGAATGGCGATTAGTGTG--AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * ** *
77310 AAAAATGGT-GAAAGA-AAAGCTTTTCTTGCGAC-CTCAAAGTGTTAATGTC-ATGTATCCTAAT
129 AAAAACGATAGAAAGACAAA-CTTTTCTTGCAACAC-CAAAGCATCAATGTCGA-GTATCCTAAT
* * * *
77371 AAAGGGCATG-TGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCGATGCT
191 AAAGGGCATGAT-TTTTGGC-TCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCT
* * ** * * * *
77435 TGTCTTTTTTATGGGATGAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCA-AGCA
254 TGTCATTTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAGAAAACATTTCCACACCA
* ** * *
77499 GAAAAAAATCATCAATATCATTTATCCTAGTAATGAGAATGTGTTTAT
319 -AAAAAAATCATCAACATCATGAATCCTAATAAGGAGAATGTGTTTAT
77547 TGTGACCAAT
Statistics
Matches: 316, Mismatches: 41, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
407 1 0.00
408 19 0.06
409 178 0.56
410 118 0.37
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (409 bp):
AAACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATAGTGCATAATCCCGAAA
AGAATGGCGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACGATAGAAAGACAAACTTTTCTTGCAACACCAAAGCATCAATGTCGAGTATCCTAATAAAGG
GCATGATTTTTGGCTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCATT
TTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAGAAAACATTTCCACACCAAAAAAAA
TCATCAACATCATGAATCCTAATAAGGAGAATGTGTTTATAGCACCTAATCGCAAAAAGAATGAC
GGCGGAAACCTTTGCTGTG
Found at i:83069 original size:13 final size:13
Alignment explanation
Indices: 83051--83076 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83041 CAATTTTTTG
83051 TGTATCGATACAT
1 TGTATCGATACAT
83064 TGTATCGATACAT
1 TGTATCGATACAT
83077 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88581 original size:42 final size:42
Alignment explanation
Indices: 88526--88644 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
88516 TTCTTCTCTC
* *
88526 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
88568 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
88610 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
88645 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:88585 original size:12 final size:11
Alignment explanation
Indices: 88559--88634 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
88549 TCTATTATCT
*
88559 CTCCTGTCTCTC
1 CTCCTATCTC-C
88571 CTCCTATCATCC
1 CTCCTATC-TCC
88583 CTCCTATCT--
1 CTCCTATCTCC
*
88592 CTACTATCT--
1 CTCCTATCTCC
*
88601 CTCCTGTCTCTC
1 CTCCTATCTC-C
88613 CTCCTATCATCC
1 CTCCTATC-TCC
*
88625 CTCCTCTCTC
1 CTCCTATCTC
88635 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:88586 original size:24 final size:24
Alignment explanation
Indices: 88550--88635 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
88540 CCTCCTCTCT
* *
88550 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
88574 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
88595 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
88616 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
88636 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:88610 original size:18 final size:18
Alignment explanation
Indices: 88541--88611 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
88531 CCTGTCATCC
* *
88541 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
88559 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
88581 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
88601 CTCCTGTCTCT
1 CTCCTGTCTCT
88612 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:90851 original size:659 final size:658
Alignment explanation
Indices: 89578--90894 Score: 2607
Period size: 659 Copynumber: 2.0 Consensus size: 658
89568 GACAACCATG
*
89578 AACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCA
1 AACCAAGGTTGCATAAATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCA
89643 AGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGC
66 AGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGC
89708 GCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAA
131 GCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAA
89773 GATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAAATGTGTTTTCTG
196 GATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAAATGTGTTTTCTG
89838 CAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGTCAT
261 CAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGTCAT
89903 AGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAA
326 AGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAA
89968 CAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAA
391 CAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAA
90033 CCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGG
456 CCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGG
90098 CTCTTCTAACTCCAAATTGGATCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCT
521 CTCTTCTAACTCCAAATTGGATCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCT
90163 TTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTG
586 TTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTG
90228 TCTTCAAT
651 TCTTCAAT
*
90236 AACCAAGGTTGTCATCAATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGC
1 AACCAAGGTTG-CATAAATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGC
90301 AAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGG
65 AAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGG
90366 CGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATA
130 CGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATA
90431 AGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAAATGTGTTTTCT
195 AGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAAATGTGTTTTCT
90496 GCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGTCA
260 GCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGTCA
90561 TAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATA
325 TAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATA
90626 ACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATA
390 ACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATA
90691 ACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGG
455 ACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGG
90756 GCTCTTCTAACTCCAAATTGGATCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCC
520 GCTCTTCTAACTCCAAATTGGATCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCC
90821 TTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTT
585 TTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTT
90886 GTCTTCAAT
650 GTCTTCAAT
90895 GGACCTTCCT
Statistics
Matches: 656, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
658 11 0.02
659 645 0.98
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (658 bp):
AACCAAGGTTGCATAAATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCA
AGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGC
GCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAA
GATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAAATGTGTTTTCTG
CAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGTCAT
AGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAA
CAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAA
CCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGG
CTCTTCTAACTCCAAATTGGATCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCT
TTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTG
TCTTCAAT
Found at i:95471 original size:34 final size:35
Alignment explanation
Indices: 95433--95499 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
95423 CCTTACAACA
95433 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
95467 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
95500 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:95975 original size:13 final size:13
Alignment explanation
Indices: 95957--95982 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95947 CAATTTTTTG
95957 TGTATCGATACAT
1 TGTATCGATACAT
95970 TGTATCGATACAT
1 TGTATCGATACAT
95983 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:97346 original size:476 final size:475
Alignment explanation
Indices: 96367--97809 Score: 1723
Period size: 476 Copynumber: 3.0 Consensus size: 475
96357 TTATTAATCA
* * *
96367 CAAAAACAACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
1 CAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
* **
96432 ATAAAAATTAGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-CTGTGTATCCTAA
66 ACAAAAATT-GATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-GTGTATCCTAA
* * ** * *
96496 TAAGAAGACTACGTTTATGGTACCTAATCC-AGATTAGAATGGGGATTAGTGTGAGTATTCTTGT
129 TAAGAAGACTTCGTTTATGGTGCCTAATCCTA-AAAAGAATAGGGATTAGTGTGAGTATTCATGT
* *
96560 TTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCA
193 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGAAAGAAAAACTTTTCTTGCA
* *
96625 ACACCAAAGCATTAATGTCATGTATCCTAATG-AAAGCAATGTGTTTTGGCTTCCTAATCTAGAA
258 ACACCAAAGCATCAATGTCATGTATCCTAATGAAAAG-AATGTGTTTTGGCTTCCAAATCT-GAA
* * * *
96689 AGAAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATGTTAAGG
321 AGAAATAGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATATTAAGG
* * * *
96754 AAAATAGGGCAAAGAAAAGATTTCCATGTAATAGAAAATCATAAATGTTATTTATCCAAATGAAG
386 AAAATAGGGCAAAGAAAAGATTTCCATGAAATAGAAAATCATAAATATCATTTATCCAAATGAAC
*
96819 AGAATGTGTTTATAGTGCCTAATCC
451 AGAATGTGTTTATAGTGCCTAAACC
* * * *
96844 CAAAAAGAATAAAGATCATTACTAGAATCCTTGTTTGTCTCACTTGATGCACAAACTTAGACTTT
1 CAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
* ** * *
96909 ACAAAAATTGATGGGAA-AAATGCCTTTCTTGCGAAGCCAAAATATCAATATCGTGAAACCTAAT
66 ACAAAAATTGATGGGAAGAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAAT
* * ** * *
96973 GAGAAGACTTCGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGCATTAGTATTCAAGTTT
130 AAGAAGACTTCGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTGTGAGTATTCATGTTT
* * * ** **
97038 GTCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAATGGTGGAAA-AAAAAGCTTTTCTTGCGG
195 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGAAAGAAAAA-CTTTTCTTGCAA
* * * * *
97102 CACCAAAGCATCAATGTCGTTTATCCTGATGAAAAGAATGTGTTTTGGCTTCCCAATCATGAAAA
259 CACCAAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTGGCTTCCAAATC-TGAAAG
* * * *
97167 AAATAGAGGCTGTTATGAGAATCGATGCTCGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAA
323 AAATAGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATATTAAGGAA
* * * *
97232 AATAGGGCAAAGAAAAGATTTCCATGCAAAT-GAAAATCATAAATATCATTTATCCTAGTGATCT
388 AATAGGGCAAAGAAAAGATTTCCATG-AAATAGAAAATCATAAATATCATTTATCCAAATGAACA
97296 GAATGTGTTTATTA-TGCCTAAACC
452 GAATGTGTTTA-TAGTGCCTAAACC
* * * * *
97320 CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCACAGACTTAGACTAT
1 CAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
* * * * *
97385 AGAAAAATT-AGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCCTTTATCCTAAT
66 ACAAAAATTGA-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAAT
* * *
97449 AAGAAGACTAT-GCTTATGGTGCCTAATCCTGAAAAGAGTAGGGATTAGTGTGAGTATTCATGTT
130 AAGAAGACT-TCGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTGTGAGTATTCATGTT
* *
97513 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGACAGAAATAAAAACTTTTCTTGCAA
194 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGAAAGAAAAACTTTTCTTGCAA
* * ** *
97578 CACCAATGCATCAATGTCCTGTATCCTAATGAAGGGTATGCAT-TTTTGGC-TCCAAATCTTGAA
259 CACCAAAGCATCAATGTCATGTATCCTAATGAAAAGAATG--TGTTTTGGCTTCCAAATC-TGAA
* * *
97641 AGGAATAG-GACTGTTACGAGAATCGATGCTTGTCATT-TTGAA-AGGATGAACTTTGATATTAA
321 AGAAATAGAGACTGTTATGAGAATCGATGCTTGTC-TTATTCAAGA-GATGAACTTTGATATTAA
* * ** * * * *
97703 GGAAAATAGGGCAAAAAAAACATTTTCACACCAAA-AG--AATCATCAACATCATTAATCCTAAT
384 GGAAAATAGGGCAAAGAAAAGA-TTTC-CATGAAATAGAAAATCATAAATATCATTTATCCAAAT
** * * *
97765 GAGGAGAATGTGTTTATAGCGCCTAATCA
447 GAACAGAATGTGTTTATAGTGCCTAAACC
*
97794 CAAAAAGAACGAAGAT
1 CAAAAAGAATGAAGAT
97810 GGAAGCCTTT
Statistics
Matches: 820, Mismatches: 126, Indels: 43
0.83 0.13 0.04
Matches are distributed among these distances:
473 2 0.00
474 56 0.07
475 72 0.09
476 593 0.72
477 96 0.12
478 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (475 bp):
CAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
ACAAAAATTGATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATA
AGAAGACTTCGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCAGAAAGAAAAACTTTTCTTGCAACA
CCAAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTGGCTTCCAAATCTGAAAGAAA
TAGAGACTGTTATGAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATATTAAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGAAATAGAAAATCATAAATATCATTTATCCAAATGAACAGAAT
GTGTTTATAGTGCCTAAACC
Found at i:98741 original size:406 final size:406
Alignment explanation
Indices: 97404--99001 Score: 2553
Period size: 406 Copynumber: 3.9 Consensus size: 406
97394 AGTGGGAAGA
* * * * * *
97404 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCCTTTATCCTAATAAGAAGACTAT-GCTTATGG
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTA---TAATAAGAAAACT-TCGTTTATGG
* ** * * *
97468 TGCCTAATCCTGAAAAGAGTAGGGATTAGTGTGAGTATTCATGTTTGTC-TTATTTAAGAGACAA
62 TGCCTAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTG-CGTTATTTAAGAGACAA
* * * * * *
97532 ACTTTGATTCTATCAAAAACGACAGAAATAAAAACTTTTCTTGCAACACCAATGCATCAATGTCC
126 ACTTTGATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCA
* * * *
97597 TGTATCCTAATGAAGGGTATGCAT-TTTTGGC-TCCAAATCTTGAAAGGAATAG-GACTGTTACG
191 TGTATCCTAATAAAGGGTATG--TGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACG
* *
97659 AGAATCGATGCTTGTCATTTTGAAAGGATGAACTTTGATATTAAGGAAAATAGGGCAAAAAAAAC
254 AGGATCGATGCTTGTCATTTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAAAAAAC
* *
97724 ATTTTCACACCAAAAGA-ATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCC
319 ATTTCCA-ACCAAAAAAGATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCC
97788 TAATCACAAAAAGAACGAAGATGG
383 TAATCACAAAAAGAACGAAGATGG
97812 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
97877 TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCGTTATTTAAGAGACAAACTTT
66 TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCGTTATTTAAGAGACAAACTTT
97942 GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
131 GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
98007 CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
196 CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
* * * * * * * *
98072 ATGCTTGTCTTTTTTATAGGATTAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
261 ATGCTTGTCATTTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAAAAAACATTTCCA
* * *
98137 AGCAGAAAAAGATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCAC
326 ACCA-AAAAAGATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCAC
98202 AAAAAGAACGAAGATGG
390 AAAAAGAACGAAGATGG
98219 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
*
98284 TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCATTATTTAAGAGACAAACTTT
66 TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCGTTATTTAAGAGACAAACTTT
98349 GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
131 GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
98414 CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
196 CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
* *
98479 ATGCTTGTCATTTTGAAAGGATGAACTTTGATATTAAGGAAAATAGGGCAAAAAAAACATTTTCA
261 ATGCTTGTCATTTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAAAAAACATTTCCA
*
98544 CACCAAAAGA-ATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCAC
326 -ACCAAAAAAGATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCAC
98608 AAAAAGAACGAAGATGG
390 AAAAAGAACGAAGATGG
98625 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
98690 TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCGTTATTTAAGAGACAAACTTT
66 TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCGTTATTTAAGAGACAAACTTT
98755 GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
131 GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
98820 CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
196 CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
* * * * * * * *
98885 ATGCTTGTCTTTTTTATAGGATTAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
261 ATGCTTGTCATTTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAAAAAACATTTCCA
* * * * * *
98950 AGCAAAAAAAGATCATCAATATCATTTATCCTAGTAATGAGAATGTGTTTAT
326 A-CCAAAAAAGATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTAT
99002 TGTGACCAAT
Statistics
Matches: 1110, Mismatches: 70, Indels: 21
0.92 0.06 0.02
Matches are distributed among these distances:
403 1 0.00
404 9 0.01
405 176 0.16
406 464 0.42
407 423 0.38
408 37 0.03
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (406 bp):
AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATAATAAGAAAACTTCGTTTATGGTGCC
TAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTGCGTTATTTAAGAGACAAACTTT
GATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCATGTAT
CCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGATCG
ATGCTTGTCATTTTGAAAGGATGAACTTTCATATTAAGGAAAATAGGGCAAAAAAAACATTTCCA
ACCAAAAAAGATCATCAACATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACA
AAAAGAACGAAGATGG
Found at i:99773 original size:159 final size:159
Alignment explanation
Indices: 99582--100248 Score: 404
Period size: 159 Copynumber: 4.2 Consensus size: 159
99572 AAACCCTTTA
*
99582 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATGATCAGACTATGTTTATGGTGCCTAATCC
1 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAT-AGACTATGTTTATGGTGCCTAATCC
*
99647 TGAAAGGAATAG-GGATGAGTGTGAGTATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTC
65 TGAAAGGAATAGAGGATGAGTGTGAGAATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTC
99711 TATCAAAAATGATAGAAAGAAAAACTTTTC
130 TATCAAAAATGATAGAAAGAAAAACTTTTC
* * ** * *
99741 TTGCAACACCAAAGCATCAATGTCGTGTATCCTAATGA-AGGGTATGCATTTTTGGTTCCTAA-C
1 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGATAGACTATG--TTTATGGTGCCTAATC
* * * * * * ** *
99804 CTTGAAAGGAATAGAGAATG-TTATGAAAATTGATGCTTGTCGTT-TTGAAGAGATGAATTTTGA
64 C-TGAAAGGAATAGAGGATGAGTGTGAGAATTCATGCTTGTC-TTATTTAAGAGACAAACTTTGA
* *** **
99867 TTTTAAGGAAAAT-AGGGTAAAGAAAAGA-TTTTC
127 TTCTATCAAAAATGATAG-AAAGAAAA-ACTTTTC
* * * * * * * * ** *
99900 ATGCAGAA--AAA--A--AATATCCTTTATCCTAGTAATGAGAATGTGTTTATTATGTCTAATCC
1 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAT-AGACTATGTTTATGGTGCCTAATCC
** * * * * * * * * * * * *
99959 CAAAATGAAT-GAAGATCATTACT-AGAATCCAAGTTTATCTCATTT--GAGGCATGAACTTAGA
65 TGAAAGGAATAGAGGATGAGT-GTGAGAATTCATGCTTGTCTTATTTAAGAGACA--AACTTTGA
* * * * * * *
100020 CTT-TA-GAAAAATTGGTGGGAAG-AAAGCCTTTG
127 -TTCTATCAAAAA-TGATAGAAAGAAAAACTTTTC
* * * * *
100052 TTGCAAAATCAAAGCATCAATATCGTGTATCCTATTGAGAAGACTATATTTATGTTGCCTAATCC
1 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGA-TAGACTATGTTTATGGTGCCTAATCC
* * * * * * *
100117 TGAAAAGAAT-GGGGATTAGTGTGAGTATTAATGTTTGTCTTTTTTAAGAGACAAACTTTGATTC
65 TGAAAGGAATAGAGGATGAGTGTGAGAATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
100181 TATCAAAAACGATAGAAAGAAAAGCATTTC
130 TATCAAAAATGATAGAAAGAAAAACTTTTC
* * *
100211 TTGCAACACCAAAGCATCAATGTCGTGTATCCTTATGA
1 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGA
100249 AGGTTATGCT
Statistics
Matches: 368, Mismatches: 108, Indels: 64
0.68 0.20 0.12
Matches are distributed among these distances:
151 3 0.01
152 22 0.06
153 57 0.15
154 10 0.03
155 6 0.02
156 1 0.00
157 12 0.03
158 82 0.22
159 163 0.44
160 12 0.03
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (159 bp):
TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGATAGACTATGTTTATGGTGCCTAATCCT
GAAAGGAATAGAGGATGAGTGTGAGAATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAATGATAGAAAGAAAAACTTTTC
Found at i:100042 original size:470 final size:469
Alignment explanation
Indices: 98625--100312 Score: 2248
Period size: 475 Copynumber: 3.6 Consensus size: 469
98615 ACGAAGATGG
* * * *
98625 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTA---TAATAAGAAAACT-TCGTTTATGG
1 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT-GTTTATGG
* ** *
98686 TGCCTAATCCAGATTAGAATGGGGATTAGTGTGAGTATTCTTGTTTG-CGTTATTTAAGAGACAA
65 TGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTC-TTATTTAAGAGACAA
** * *
98750 ACTTTGATTCTATCAAAAACGGCAGAAAGAATAACTTTTCTTGCAACACCAAAGCATTAATGTCA
129 ACTTTGATTCTATCAAAAACGATAGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * *
98815 TGTATCCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAG
194 TGTATCCTAATAAAGGGTATGTGTTTTGGCTTCCCAACCTTGAAAAGAATAGAGACTGTTACGAG
* * *
98880 GATCGATGCTTGTCTTTTTTATAGGATTAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAAGAT
259 AATCGATGCTTGTC-TTTTTA-AGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
98945 TTCCAAGCAAAAAAAGATCATCAATATCATTTATCCTAGTAATGAGAATGTGTTTATTGTGACCA
322 TTCCATGC-AGAAAA-AT-A--AATATCATTTATCCTAGTAATGAGAATGTGTTTATTGTGACTA
99010 ATCCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGA
382 ATCCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGA
*
99075 CTTTAGAAAAATTGGTGGAAAGA
447 CTTTAGAAAAATTGGTGGGAAGA
* *
99098 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCTTAATGAGAAGACTATGTTTATAGT
1 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* * *
99163 GCCTAATCCTAAAAAAAATGGGGA-TATGTGCGAGTATTCA-GATTTGTCTTATTTAAGAGACAA
66 GCCTAATCCTGAAAAGAATGGGGATTA-GTGTGAGTATTCATG-TTTGTCTTATTTAAGAGACAA
* * * * * * *
99226 ACTATGATTCTATCAAAAATGGT-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAACGTCA
129 ACTTTGATTCTATCAAAAACGATAGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * * * * *
99290 TGTATCCTAATAAAAGGTTTGTGTTTTGGTTTCCCAACCTTGAACAGAGTCGAGACTGTCACGAG
194 TGTATCCTAATAAAGGGTATGTGTTTTGGCTTCCCAACCTTGAAAAGAATAGAGACTGTTACGAG
* * * *
99355 GATCGATGCTTGTCTTATTTATGTGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
259 AATCGATGCTTGTCTT-TTTAAG-GATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
99420 ATCCATGCAGGAGAAAATCGTTAATATCATTTATCCTAGTGATGAGAATGCGTTTATTGTGCCTA
322 TTCCATGCA-GA-AAAA---TAAATATCATTTATCCTAGTAATGAGAATGTGTTTATTGTGACTA
* * *
99485 ATCCCAAAATGAATGAAGATCATTACTAAAATCCAAGTTTGTCTCATTTGAGGTACGAACTTAGA
382 ATCCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGA
99550 CTTTAGAAAAATTGGTGGGAAGA
447 CTTTAGAAAAATTGGTGGGAAGA
* * * **
99573 AACCCTTTATTGCAAAACCAAAGCATCAATATCATGTATCCTAATGATCAGACTATGTTTATGGT
1 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* * * *
99638 GCCTAATCCTGAAAGGAATAGGGATGAGTGTGAGTATTCATGCTTGTCTTATTTAAGAGACAAAC
66 GCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* *
99703 TTTGATTCTATCAAAAATGATAGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAATGTCGTG
131 TTTGATTCTATCAAAAACGATAGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAATGTCATG
* * * * * *
99768 TATCCTAATGAAGGGTATGCAT-TTTTGG-TTCCTAACCTTGAAAGGAATAGAGAATGTTATGAA
196 TATCCTAATAAAGGGTATG--TGTTTTGGCTTCCCAACCTTGAAAAGAATAGAGACTGTTACGAG
* * *
99831 AATTGATGCTTGTCGTTTTGAAGAGATGAATTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGAT
259 AATCGATGCTTGTC-TTTTTAAG-GATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
99896 TTTCATGCAGAAAAA-AAATATCCTTTATCCTAGTAATGAGAATGTGTTTATTATGTCTAATCCC
322 TTCCATGCAGAAAAATAAATATCATTTATCCTAGTAATGAGAATGTGTTTATTGTGACTAATCCC
*
99960 AAAATGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCATGAACTTAGACTTTA
387 AAAATGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGACTTTA
100025 GAAAAATTGGTGGGAAGA
452 GAAAAATTGGTGGGAAGA
* * * *
100043 AAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCCTATTGAGAAGACTATATTTATGTT
1 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* *
100108 GCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTAATGTTTGTCTTTTTTAAGAGACAAAC
66 GCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * *
100173 TTTGATTCTATCAAAAACGATAGAAAGAAAAGCATTTCTTGCAACACCAAAGCATCAATGTCGTG
131 TTTGATTCTATCAAAAACGATAGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAATGTCATG
* * * * *
100238 TATCCTTATGAAGGTTATGCTTTTTTGG-TTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGA
196 TATCCTAATAAAGGGTATG-TGTTTTGGCTTCCCAACCTTGAAAAGAATAGAGACTGTTACGAGA
100302 ATCGATGCTTG
260 ATCGATGCTTG
100313 ATGACAACCA
Statistics
Matches: 1067, Mismatches: 127, Indels: 45
0.86 0.10 0.04
Matches are distributed among these distances:
469 1 0.00
470 362 0.34
473 36 0.03
474 8 0.01
475 414 0.39
476 234 0.22
477 10 0.01
478 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (469 bp):
AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
GCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACGATAGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAATGTCATG
TATCCTAATAAAGGGTATGTGTTTTGGCTTCCCAACCTTGAAAAGAATAGAGACTGTTACGAGAA
TCGATGCTTGTCTTTTTAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
ATGCAGAAAAATAAATATCATTTATCCTAGTAATGAGAATGTGTTTATTGTGACTAATCCCAAAA
TGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGACTTTAGAAA
AATTGGTGGGAAGA
Found at i:105339 original size:42 final size:42
Alignment explanation
Indices: 105284--105402 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
105274 TTCTTCTCTC
* *
105284 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
105326 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
105368 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
105403 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:105343 original size:12 final size:11
Alignment explanation
Indices: 105317--105392 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
105307 TCTATTATCT
*
105317 CTCCTGTCTCTC
1 CTCCTATCTC-C
105329 CTCCTATCATCC
1 CTCCTATC-TCC
105341 CTCCTATCT--
1 CTCCTATCTCC
*
105350 CTACTATCT--
1 CTCCTATCTCC
*
105359 CTCCTGTCTCTC
1 CTCCTATCTC-C
105371 CTCCTATCATCC
1 CTCCTATC-TCC
*
105383 CTCCTCTCTC
1 CTCCTATCTC
105393 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:105344 original size:24 final size:24
Alignment explanation
Indices: 105308--105393 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
105298 CCTCCTCTCT
* *
105308 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
105332 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
105353 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
105374 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
105394 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:105368 original size:18 final size:18
Alignment explanation
Indices: 105299--105369 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
105289 CCTGTCATCC
* *
105299 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
105317 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
105339 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
105359 CTCCTGTCTCT
1 CTCCTGTCTCT
105370 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:107907 original size:158 final size:157
Alignment explanation
Indices: 107280--108460 Score: 383
Period size: 158 Copynumber: 7.5 Consensus size: 157
107270 GAATTGAGAC
* * * * * ** * * *
107280 TTTACAAAAATTGGTGGGCAA-AATGCCTTTCTTGCGAAGCCAAAATATCAATATCGTGAAACCT
1 TTTAGAAAAATTGGT-GGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
* * * *
107344 AA-TGAGAAGACT-TCGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA-GTATGAGTATTC
65 AAGT-A-AAGACTAT-GTTTATGGTACCTAATCCTGAAAAGAATGGAGATAATGTACGAGTATTC
* * *
107406 AAGC-TTATCTTATTTAAGAGAAAAACTTTGA
127 -ATCTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * * *
107437 TTCTATAAAAAAACGG-GGTAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATTTAT
1 TT-TA-GAAAAATTGGTGG-AAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* * * * * * *
107501 CCTAA-TGAAAGGAATATGTTT-TGGCTTCCCAATCTTGAAAAGAAT--AGAGACTGTTATGAG-
62 CCTAAGT-AAA-GACTATGTTTATGG-TACCTAATCCTGAAAAGAATGGAGATAATG-TACGAGT
* * **
107561 AATCGATGC-TTGTCTTATTTAAAAGATGAACTTTGAA
123 ATTC-AT-CTTTGTCTTATTTAAGAGACAAACTTTG-A
* ** * * * * * *
107598 TTTAAGGAAAATAAG-GCAAAGAAAAG-ATTTCCATGCAAAACAAAATCATCAATATCATTTATC
1 TTT-AGAAAAATTGGTGGAAAG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATC
** * * * ** * * * * * *
107661 CT-AGTGATGTGAATGTGTTCATTATGCCTAAACC-CAAAATGAATGAAGATTAA--TACTAGAA
63 CTAAGT-A-AAGACTATGTTTATGGTACCTAATCCTGAAAA-GAATGGAGA-TAATGTACGAGTA
* ** * *
107722 TCCAAGTTTGTCTCT-TTTGAG-GCACAAACTTAGA
124 TTCATCTTTGTCT-TATTTAAGAG-ACAAACTTTGA
* *
107756 CTTTAGAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCCT
1 -TTTAGAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
* * *
107821 AAGGAGAAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGGGAT-ATGTGCGAGTATTCAT
65 AAGTA-AAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGAGATAATGTACGAGTATTCAT
107885 CTTTGTCTTATTTAAGAGACAAACTTTGA
129 CTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * ** *
107914 TTCTATCAAAAA-TAGT-GAAAGAAAAGCTTTTCTTGCGACACCAAAGGGTCAATGTCATGTATC
1 TT-TA-GAAAAATTGGTGGAAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
** * * * * * * *
107977 CTAA-TAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAG--ACTGTTACGAGGA-
63 CTAAGTAAAGACTATGT-TTATGG-TACCTAATCCTGAAAAGAATGGAGATAATG-TACGAGTAT
* * ** * *
108038 TCGATGC-TTGTCCTT-TTTATGGGATGAATTTTCA
125 TC-AT-CTTTGT-CTTATTTAAGAGACAAACTTTGA
* * * *** * * * *
108072 TTTTAAGGAAAATAGG-GCAAAGAAAATATTTCCATGCAGAAA-AAAATCATCAATATCATTTAT
1 -TTT-AGAAAAATTGGTGGAAAGAAAGCCTTT-CTTGCA-AAACCAAAGCATCAATATCATGTAT
* * * * * * * *
108135 CCT-AGTAATGAGAATGTGTTTATTGTGACC-AATCC-CAAAATGAATGAAGATCAT-TACTAGA
62 CCTAAGTAA--AGACTATGTTTATGGT-ACCTAATCCTGAAAA-GAATGGAGATAATGTACGAGT
* ** * ** * * *
108196 ATCCAAGTTTATCCCATTTGAG-GCACGAACTTAGA
123 ATTCATCTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * *
108231 CTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCT
1 -TTTAGAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
* * * * * *
108296 -ATTAATAAGACTATATTTATAGTGCGTAATCCTGAAAAGAATGGGGATTAATGT--GAGTATTC
65 AAGT-A-AAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGAGA-TAATGTACGAGTATTC
*
108358 ATGTTTGTCTTATTTAAGAGACAAACTTTGA
127 ATCTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * *
108389 TTCTATCAAAAA-TGATAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATC
1 TT-TA-GAAAAATTGGTGGAAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
108453 CTAA-TAAA
63 CTAAGTAAA
108461 TGTTATGCAT
Statistics
Matches: 734, Mismatches: 216, Indels: 148
0.67 0.20 0.13
Matches are distributed among these distances:
156 9 0.01
157 30 0.04
158 311 0.42
159 255 0.35
160 113 0.15
161 15 0.02
162 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
TTTAGAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTA
AGTAAAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGAGATAATGTACGAGTATTCATCT
TTGTCTTATTTAAGAGACAAACTTTGA
Found at i:108133 original size:475 final size:472
Alignment explanation
Indices: 107276--108616 Score: 1750
Period size: 475 Copynumber: 2.8 Consensus size: 472
107266 GCATGAATTG
* * * * * ** *
107276 AGACTTTACAAAAATTGGTGGGCAA-AATGCCTTTCTTGCGAAGCCAAAATATCAATATCGTGAA
1 AGACTTTAGAAAAATTGGTGGG-AAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTA
* *
107340 ACCTAATGAGAAGACT-TCGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
65 TCCTAATGAGAAGACTAT-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGA-TA-TGTGAGTAT
* * * * *
107404 TCAAGC-TTATCTTATTTAAGAGAAAAACTTTGATTCTAT-AAAAAAACGGGGTAAAGAAAAGCT
127 TC-ATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATA--GTG-AAAGAAAAGCT
* * *
107467 TTTCTTGCGACACCAAAGCATCAATGTCATTTATCCTAATGAAAGGAATATGTTTTGGCTTCCCA
188 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-AAAGGTATGTGTTTTGGCTTCCCA
*
107532 ATCTTGAAAAGAATAGAGACTGTTATGAGAATCGATGCTTGT-CTTATTTAAAAGATGAACTTTG
252 ATCTTGAAAAGAATAGAGACTGTTATGAGAATCGATGCTTGTCCTT-TTTAAAGGATGAACTTTG
* *
107596 AATTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATC
316 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATC
* * *
107661 CTAGTGATGTGAATGTGTTCATTATG-CCTAAACCCAAAATGAATGAAGATTAATACTAGAATCC
381 CTAGTAATGAGAATGTGTTCATTATGACC-AAACCCAAAATGAATGAAGATCAATACTAGAATCC
* * *
107725 AAGTTTGTCTCTTTTGAGGCACAAACTT
445 AAGTTTATCCCATTTGAGGCACAAACTT
*
107753 AGACTTTAGAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTAT
1 AGACTTTAGAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTAT
* *
107818 CCTAAGGAGAAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGGGATATGTGCGAGTATTC
66 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATATGT--GAGTATTC
107883 ATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGAAAGAAAAGCTTTTCTT
129 ATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGAAAGAAAAGCTTTTCTT
** *
107948 GCGACACCAAAGGGTCAATGTCATGTATCCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTG
194 GCGACACCAAAGCATCAATGTCATGTATCCTAATAAA-GGTATGTGTTTTGGCTTCCCAATCTTG
* * * * ** * *
108013 AAAAGAGTGGAGACTGTTACGAGGATCGATGCTTGTCCTTTTTATGGGATGAATTTTCATTTTAA
258 AAAAGAATAGAGACTGTTATGAGAATCGATGCTTGTCCTTTTTAAAGGATGAACTTTGATTTTAA
*
108078 GGAAAATAGGGCAAAGAAAATATTTCCATGCAGAAA-AAAATCATCAATATCATTTATCCTAGTA
323 GGAAAATAGGGCAAAGAAAAGATTTCCATGCA-AAACAAAATCATCAATATCATTTATCCTAGTA
* * * *
108142 ATGAGAATGTGTTTATTGTGACCAATCCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTA
387 ATGAGAATGTGTTCATTATGACCAAACCCAAAATGAATGAAGATCAATACTAGAATCCAAGTTTA
*
108207 TCCCATTTGAGGCACGAACTT
452 TCCCATTTGAGGCACAAACTT
*
108228 AGACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTAT
1 AGACTTTAGAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTAT
* * * * * *
108293 CCTATTAATAAGACTATATTTATAGTGCGTAATCCTGAAAAGAATGGGGATTAATGTGAGTATTC
66 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA-T-ATGTGAGTATTC
*
108358 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GATAGAAAGAAAAGCTTTTC
129 ATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAG-T-GAAAGAAAAGCTTTTC
* * *
108422 TTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAATGTTATGCAT-TTTTGG-TTCCCAAT
192 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAA-GGTATG--TGTTTTGGCTTCCCAAT
* * * *
108485 CTTGAAAAGAATAAAGTCTATTATGAGAATC-ATTGCTTGTCTTTTTTCAAAAGGATGAACTTTG
254 CTTGAAAAGAATAGAGACTGTTATGAGAATCGA-TGCTTGTCCTTTTT--AAAGGATGAACTTTG
* * ** * * * *
108549 ATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATGATCAATATCATTAATC
316 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATC
108614 CTA
381 CTA
108617 ATGAGGAAAA
Statistics
Matches: 759, Mismatches: 85, Indels: 39
0.86 0.10 0.04
Matches are distributed among these distances:
474 4 0.01
475 413 0.54
476 117 0.15
477 150 0.20
478 75 0.10
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
AGACTTTAGAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTAT
CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATATGTGAGTATTCAT
CTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGAAAGAAAAGCTTTTCTTGC
GACACCAAAGCATCAATGTCATGTATCCTAATAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAA
AGAATAGAGACTGTTATGAGAATCGATGCTTGTCCTTTTTAAAGGATGAACTTTGATTTTAAGGA
AAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTAGTAATGA
GAATGTGTTCATTATGACCAAACCCAAAATGAATGAAGATCAATACTAGAATCCAAGTTTATCCC
ATTTGAGGCACAAACTT
Found at i:109018 original size:412 final size:410
Alignment explanation
Indices: 108254--109877 Score: 1102
Period size: 412 Copynumber: 3.8 Consensus size: 410
108244 AGTGGGAAGA
* * * *
108254 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTATTAATAAGACTATATTTATAGT
1 AAGCCTTTGCTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAAACTATATTTATAGT
* *
108319 GCGTAATCCTGAAAAGAATGGGGATTAATGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
66 GCGTAATCCTGAAAAGAATGGGGATTAATGTGAGTATTCATGTTTGCCTTATTCAAGAGACAAAC
*
108384 TTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTG
131 TTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATG
* * *
108449 TATCCTAATAAATGTTATGCATTTTTGGTTCCCAATCTTGAAAAGAATAAAGTCTATTATGAGAA
196 TATCCTAATAAAGGTTATG-ATTTTTGGTTCCCAATCTTGAAAAGAATAAAGACTATTACGAGAA
* * *
108514 TCATTGCTTGTCTTTTTTCAAAAGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGAT
260 TCATTGCTTGTCTTATTT-AAAAGGATAAACTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* *
108579 TTTCACACTAAAGAAAATGATCAATATCATTAATCCTAATGAGGAAAATGTGTTTATAGCGCCTA
324 ATCCACACTAAAGAAAATGATCAATATCATTAATCCTAATGAGGAAAATGTGTTTATAGCGCCTA
108644 ATCACAAAAAGAACGAAGATGG
389 ATCACAAAAAGAACGAAGATGG
** ** * * *
108666 AAGCCTTTGCTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAAATTATGTTTATGGT
1 AAGCCTTTGCTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAAACTATATTTATAGT
* * *
108731 GCTTAATCCTGAAAGGAATGGGGA-TATATGTGAGTATTCATGTTTGCCTTATTCAAGAGATAAA
66 GCGTAATCCTGAAAAGAATGGGGATTA-ATGTGAGTATTCATGTTTGCCTTATTCAAGAGACAAA
* * *
108795 CTTTGATTCTATCAAAAATGGT-GAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAT
* * ** *
108859 GTATCCTAATAAAAGGTT-TG-TGTTTTGGTTTCCCAATCTTGAACAGAGTGGAGACTGTTACGA
195 GTATCCTAAT-AAAGGTTATGAT-TTTTGG-TTCCCAATCTTGAAAAGAATAAAGACTATTACGA
* ** *
108922 GGATCGA-TGCTTGTCTTATTT-ATGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
257 GAATC-ATTGCTTGTCTTATTTAAAAGGATAAACTTTGATATTAAGGAAAATAAGGCAAAGAAAA
* * * * * * *
108985 GATATCCATGCAGTAGGAGAAAATCG-TCAATATCATTTATCCTAGTGATG-AGATGCGTTTATT
321 GATATCCA--CACTA-AAGAAAAT-GATCAATATCATTAATCCTAATGAGGAAAATGTGTTTA-T
* * * * **
109048 A-TGCCTAATCCCAAAATGAATGAAGATCATTACT
381 AGCGCCTAATCACAAAAAGAACGAAG---A-T-GG
** * * * * *** *
109082 AAGTTCCAATTTTGTCT-CATTTGAGGCACAAA-CTTTCACT-TTG-GAAAAAATAGTGGGAAGA
1 AAG--CC---TTTG-CTGCA----AAAC-CAAAGC-ATCAATATCGTG-TATCCTAAT---AAGA
* * * * ** * * *** *
109143 AAGCCTTTGTTGCAAAATCAAAGCATCAATATCCT-ATATCCTAATGAGAAGACTATGTGTATGC
50 AA-ACTATATT----TAT-AGTGCGT--A-ATCCTGA-A----AA-GA-ATGGGGAT-T-AATG-
* * * ** ** ** ** **
109207 TGCGTAATCCTGAAAAGAATAGGGATTAGTGT-AAGTATTC-ATGTTTGTCTTATT-TAAGAGAT
96 TGAGT-AT--T--CATG--TTTGCCTTA-T-TCAAG-AGACAAACTTTG----ATTCTATCA-A-
109269 AAACTTTGATTCTATCAAAAACGACAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGT
145 AAA---TG-----AT----------AGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGT
* * * *
109334 CGTGTATCCTAATGAAAGG-TATGCATTTTTGGTTCCCAATCTTGAAAAGAATAGAGTCTATTAT
192 CATGTATCCTAAT-AAAGGTTATG-ATTTTTGGTTCCCAATCTTGAAAAGAATAAAGACTATTAC
* * *
109398 GAGAATCATTGCTTGTCTTTTTTCAAAAGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAA
255 GAGAATCATTGCTTGTCTTATTT-AAAAGGATAAACTTTGATATTAAGGAAAATAAGGCAAAGAA
* *
109463 AAGATTTTCACACTAAAGAAAATGATCAATATCATTAATCCTAATGAGGAAAATGTGTTTATAGC
319 AAGATATCCACACTAAAGAAAATGATCAATATCATTAATCCTAATGAGGAAAATGTGTTTATAGC
109528 GCCTAATCACAAAAAGAACGAAGATGG
384 GCCTAATCACAAAAAGAACGAAGATGG
** ** * * *
109555 AAGCCTTTGCTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAAATTATGTTTATGGT
1 AAGCCTTTGCTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAAACTATATTTATAGT
* * *
109620 GCTTAATCCTGAAAGGAATGGGGA-TATATGTGAGTATTCATGTTTGCCTTATTCAAGAGATAAA
66 GCGTAATCCTGAAAAGAATGGGGATTA-ATGTGAGTATTCATGTTTGCCTTATTCAAGAGACAAA
* * * * * * *
109684 CTTTGATTCTATCAAAAACGACAAAAAGAAAAGCTTCTCTTGCGACACGAAAGCATCAACGTCAT
130 CTTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAT
* * ** *
109749 GTATCCCAATAAAGAG-TATG-TGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTAC-A
195 GTATCCTAATAAAG-GTTATGAT-TTTTGG-TTCCCAATCTTGAAAAGAATAAAGACTATTACGA
* * ** * * *
109811 AAGATCGA-TCCTTGTCTTATTT-ATGGGATGAACTTTGAT-TTTAGGAAAAATAGGGCAAAGAA
257 GA-ATC-ATTGCTTGTCTTATTTAAAAGGATAAACTTTGATATTAAGG-AAAATAAGGCAAAGAA
109873 AAGAT
319 AAGAT
109878 TTCTATGTAG
Statistics
Matches: 915, Mismatches: 187, Indels: 222
0.69 0.14 0.17
Matches are distributed among these distances:
409 49 0.05
410 43 0.05
411 142 0.16
412 261 0.29
413 2 0.00
414 1 0.00
415 1 0.00
416 3 0.00
418 2 0.00
421 4 0.00
422 3 0.00
424 1 0.00
425 9 0.01
426 8 0.01
427 1 0.00
428 4 0.00
429 5 0.01
430 3 0.00
431 4 0.00
432 3 0.00
433 2 0.00
434 5 0.01
435 9 0.01
436 7 0.01
437 6 0.01
438 2 0.00
440 1 0.00
441 1 0.00
442 4 0.00
443 7 0.01
444 4 0.00
445 4 0.00
446 7 0.01
447 4 0.00
448 1 0.00
449 1 0.00
451 2 0.00
452 6 0.01
453 7 0.01
454 9 0.01
455 5 0.01
456 2 0.00
457 3 0.00
458 4 0.00
459 3 0.00
460 5 0.01
461 4 0.00
462 2 0.00
463 8 0.01
464 9 0.01
465 1 0.00
467 3 0.00
468 4 0.00
471 2 0.00
473 3 0.00
474 1 0.00
475 1 0.00
476 1 0.00
477 32 0.03
478 134 0.15
479 6 0.01
480 44 0.05
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (410 bp):
AAGCCTTTGCTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAAACTATATTTATAGT
GCGTAATCCTGAAAAGAATGGGGATTAATGTGAGTATTCATGTTTGCCTTATTCAAGAGACAAAC
TTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATG
TATCCTAATAAAGGTTATGATTTTTGGTTCCCAATCTTGAAAAGAATAAAGACTATTACGAGAAT
CATTGCTTGTCTTATTTAAAAGGATAAACTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATAT
CCACACTAAAGAAAATGATCAATATCATTAATCCTAATGAGGAAAATGTGTTTATAGCGCCTAAT
CACAAAAAGAACGAAGATGG
Found at i:109495 original size:889 final size:885
Alignment explanation
Indices: 107779--112220 Score: 6063
Period size: 884 Copynumber: 5.0 Consensus size: 885
107769 GGTGGGAAGA
* * *
107779 AAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCCTAA-GGAGAAGACTATGTTTATGG
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGG-GAAGACTATGTTTATGG
* * * *
107843 TACCTAATCCTGAAAAGAATGGGGATATGTGCGAGTATTCATCTTTGTCTTATTTAAGAGACAAA
65 TGCCTAATCCTGAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAA
* **
107908 CTTTGATTCTATCAAAAATAGTGAAAGAAAAGCTTTTCTTGCGACACCAAAGGGTCAATGTCATG
130 CTTTGATTCTATCAAAAATGGTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* *
107973 TATCCTAATAAAGGGTATGTGTTTTGGCTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGGA
195 TATCCTAATAAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGGA
* * *
108038 TCGATGCTTGTCCTT-TTTATGGGATGAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAATATT
260 TCGATGCTTGT-CTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
108102 TCCATGCAGAAAAAAATCATCAATATCATTTATCCTAGTAATGAGAATGTGTTTATTGTGACC-A
324 TCCATGCAGAAGAAAATCATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTATG-CCTA
* * *
108166 ATCCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTATCCCATTTGAGGCACGAACTTAGA
388 ATCCCAAAATGAATGAAGATCATTACTAGAATCCAATTTTGTCTCATTTGAGGCACGAACTTAGA
*
108231 CTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCT
453 CTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCCT
* * * * * *
108296 ATTAATAAGACTATATTTATAGTGCGTAATCCTGAAAAGAATGGGGATTAATGTGAGTATTCATG
518 AATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATTCATG
* *
108361 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGC
583 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGACAGAAAGAAAAGCTTTTCTTGC
* * *
108426 AACACCAAAGCATCAATGTCGTGTATCCTAATAAATGTTATGCATTTTTGGTTCCCAATCTTGAA
648 AACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTATGCATTTTTGGTTCCCAATCTTGAA
* * *
108491 AAGAATAAAGTCTATTATGAGAATCATTGCTTGTCTTTTTTCAAAAGGATGAACTTTGATATTAA
713 AAGAATAGAGACTATTATGAGAATCA-TGCTTGTC-TTTTTCAAAGGGATGAACTTTGATATTAA
*
108556 GGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATGATCAATATCATTAATCCTAATGA
776 GGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATCATCAATATCATTAATCCTAATGA
*
108621 GGAAAATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGATGG
841 GGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGATGG
* * *
108666 AAGCCTTTGCTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAAATTATGTTTATGGT
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGGT
* * * * *
108731 GCTTAATCCTGAAAGGAATGGGGATATATGTGAGTATTCATGTTTGCCTTATTCAAGAGATAAAC
66 GCCTAATCCTGAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAAC
*
108796 TTTGATTCTATCAAAAATGGTGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
131 TTTGATTCTATCAAAAATGGTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * *
108861 ATCCTAATAAAAGGTTTGTGTTTTGGTTTCCCAATCTTGAACAGAGTGGAGACTGTTACGAGGAT
196 ATCCTAATAAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGGAT
* * *
108926 CGATGCTTGTCTTATTTATGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATATC
261 CGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* *
108991 CATGCAGTAGGAGAAAATCGTCAATATCATTTATCCTAGTGATGAG-ATGCGTTTATTATGCCTA
326 CATGCAG-A--AGAAAATCATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTATGCCTA
* * **
109055 ATCCCAAAATGAATGAAGATCATTACTA-AGTTCCAATTTTGTCTCATTTGAGGCACAAACTTTC
388 ATCCCAAAATGAATGAAGATCATTACTAGA-ATCCAATTTTGTCTCATTTGAGGCACGAACTTAG
* * * *
109119 ACTTTGGAAAAAATAGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCCTATATCC
452 ACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCC
* * * * * * * *
109184 TAATGAGAAGACTATGTGTATGCTGCGTAATCCTGAAAAGAATAGGGATTAGTGTAAGTATTCAT
517 TAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATTCAT
*
109249 GTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGACAGAAAGAAAAGCTTTTCTTG
582 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGACAGAAAGAAAAGCTTTTCTTG
*
109314 CAACACCAAAGCATCAATGTCGTGTATCCTAATGAAAGGTATGCATTTTTGGTTCCCAATCTTGA
647 CAACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTATGCATTTTTGGTTCCCAATCTTGA
* *
109379 AAAGAATAGAGTCTATTATGAGAATCATTGCTTGTCTTTTTTCAAAAGGATGAACTTTGATATTA
712 AAAGAATAGAGACTATTATGAGAATCA-TGCTTGTC-TTTTTCAAAGGGATGAACTTTGATATTA
*
109444 AGGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATGATCAATATCATTAATCCTAATG
775 AGGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATCATCAATATCATTAATCCTAATG
*
109509 AGGAAAATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGATGG
840 AGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGATGG
* * *
109555 AAGCCTTTGCTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAAATTATGTTTATGGT
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGGT
* * * * *
109620 GCTTAATCCTGAAAGGAATGGGGATATATGTGAGTATTCATGTTTGCCTTATTCAAGAGATAAAC
66 GCCTAATCCTGAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAAC
* *** * * *
109685 TTTGATTCTATCAAAAACGACAAAAAGAAAAGCTTCTCTTGCGACACGAAAGCATCAACGTCATG
131 TTTGATTCTATCAAAAATG-GTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * *
109750 TATCCCAAT-AAAGAGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACAAAG
195 TATCCTAATAAAAG-GTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGG
*
109814 ATCGATCCTTGTCTTATTTATGGGATGAACTTTGATTTT-AGGAAAAATAGGGCAAAGAAAAGAT
259 ATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGG-AAAATAGGGCAAAGAAAAGAT
* * * * *
109878 TTCTATGTAGAAGAAAATCATCAATGCTAGAATCCATGCTAGAATCCTTATTATCCTAATAAGGA
323 TTCCATGCAGAAG-AAA--ATC-AT-C---AAT--AT-C----A----T-TTATCCTAGTGATGA
* ** * *
109943 GAATGTGTTTA-TAGTGCCTCATCATAAAAAGAATGAAGATCAGTACTAGAATCC-ATGTTTGTC
368 GAATGTGTTTATTA-TGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCAAT-TTTGTC
* * * * * * * **
110006 TCATTTGGGGCATGAACTTAGACTTCACAATAATTGGTGAGAAGAAAGCCTTTGTTG-TTAATCC
431 TCATTTGAGGCACGAACTTAGACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAAT-C
* * * * * *
110070 AAAGCATCAATATCGGGTATCCTAATGAGAACATTATGTTTATGGTGCCTAATCTTGAGAAGAAT
495 AAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * * *
110135 GGGGATTACTATTAGTATTCGTGTTTGTCTTACTTAAGAGACAAACTTCGTTTCTATCAAAAACA
560 GGGGATTAATATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * *
110200 ATGAGAAA-AAAACCTTTTTTTGCGACACCAAAGCATCAATGTTGTGTATCCTAACGAAGGGTAT
625 A-CAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTAT
* *
110264 GCATTTTTGGTTCCCAATCTTGAAAAGCATAGAGACTGTTATGAGAATCAATGCTTGTCTTTTT-
689 GCATTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTATTATGAGAATC-ATGCTTGTCTTTTTC
* * *
110328 GAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTGACACGAAAGAAAATC
753 AAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATC
* *
110393 ATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAACGCCTATTCAC--AAAGAACGAAGA
818 ATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGA
110456 TGG
883 TGG
* * * * **
110459 AAGCCTTTGCTACAAAACCAAAGCAATCAATATCCTGTATCCTAGTCAGAAGACTATGTTTATGG
1 AAGCCTTTGCTGCGAAACCAAAGC-ATCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGG
* * * *
110524 TGCCTAATTCTGAAAAGAATGGGGTTATGTGTGAGTATTCATGTTTATCTTATTTAAGAGACAAA
65 TGCCTAATCCTGAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAA
* ** ** *
110589 CTTTGATTCTATCAAAAACGGCAAAAGGAAAAGCTGCTCTTACGACACCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAATGGTGAAA-GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * *
110654 GTATCCCAATAAAGGGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAAG
194 GTATCCTAATAAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGG
* * *
110719 ATTGATCCTTATCTTATTTATGGGATGAACTTTGATTTT-AGGAAATATAGGGCAAAGAAAAGAT
259 ATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAA-ATAGGGCAAAGAAAAGAT
* * * * ** *
110783 TTCTATGTAAAAGAAAATCATCAAT-GCTATTTATCCTAAAGAGGAGAATGTG-TTA-TAGTGCC
323 TTCCATGCAGAAGAAAATCATCAATATC-ATTTATCCTAGTGATGAGAATGTGTTTATTA-TGCC
* ** * * * * *
110845 TCATCATAAAAAGAATGAAGATCAGTACTAGAATCC-ATGTTTGGCTTATTTGAGTCACGAACTT
386 TAATCCCAAAATGAATGAAGATCATTACTAGAATCCAAT-TTTGTCTCATTTGAGGCACGAACTT
* * * *** * *
110909 AGACTTTACAATAATTGGTGGGAAGAAAGCCTTTGTT-TTTAATCCAAAGCATCAATATTGGGTA
450 AGACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAAT-CAAAGCATCAATATCGTGTA
* * * * * *
110973 TCCTAATAGGAACATTATGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTACTATGAGTATT
514 TCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATT
* * * * * *
111038 CATGTTTGTTTTACTTAAGAGACAAACTTCT-TTTCTATCAAAAATGGAAAG-AAGAAATGCTTT
579 CATGTTTGTCTTATTTAAGAGACAAACTT-TGATTCTATCAAAAA-CGACAGAAAGAAAAGCTTT
* * * * *
111101 TCTTGCGACACTAAAGCATCAATGTTGTGTATCCTAACGAGGGGTATGCATTTTTGGTTCCCAAT
642 TCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTATGCATTTTTGGTTCCCAAT
* * * *
111166 CTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCTATTT-GAAGGGATGAACTGTGAT
707 CTTGAAAAGAATAGAGACTATTATGAGAATC-ATGCTTGTCTTTTTCAAAGGGATGAACTTTGAT
*
111230 ATTAAGGAAAATAGGGCAAAGAAAAGATTTTCACA-TAAAAGAAAATCATCAATATCTTTAATCC
771 ATTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACT-AAAGAAAATCATCAATATCATTAATCC
*
111294 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAACGAAGATGG
835 TAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGATGG
* * * *
111345 AAGCCGTTACTACGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
1 AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGGT
* * * *
111410 GCCTAGTCCTAAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTTTTTAAGAGATAAAT
66 GCCTAATCCTGAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAAC
* * * *
111475 TTTGATTCTATCAAAAATGGTGAAAGAAAAGCTTTTCTTGCAAAATCAAAGCGTCAATGTCATGT
131 TTTGATTCTATCAAAAATGGTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* *
111540 ATCCTAATAAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAAA-AGTGGAGACTGTCATGAGGAT
196 ATCCTAATAAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGGAT
*
111604 CGATGCTTGTCTTATTTATGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
261 CGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* *
111669 CATGCAGAAGAAAATAATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTGTGCCTAATC
326 CATGCAGAAGAAAATCATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTATGCCTAATC
* * *
111734 CCAAAATGAATGAAGATTATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTT
391 CCAAAATGAATGAAGATCATTACTAGAATCCAATTTTGTCTCATTTGAGGCACGAACTTAGACTT
* *
111799 TAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAACCAAACCATCAATATCGTGTATCCTAAT
456 TAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCCTAAT
111864 AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTT
521 AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTT
* * * *
111929 GTCTTATTAAAGAGACAAACTTTGATTCTGTCAAAAACGCCAGAAAAAAAAGCTTTTCTTGCAAC
586 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGACAGAAAGAAAAGCTTTTCTTGCAAC
* *
111994 ATCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTACGCATTTTTGGTTCCCAATCTTGAAAAG
651 ACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTATGCATTTTTGGTTCCCAATCTTGAAAAG
* * *
112059 AATAGAGACTGTTACGAGAATCGATACTTGTCTTTTTCAAAGGGATGAACTTTGATATTAAGGAA
716 AATAGAGACTATTATGAGAATC-ATGCTTGTCTTTTTCAAAGGGATGAACTTTGATATTAAGGAA
*
112124 AATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATCATCAATATCATTAATCTTAATGAGGAG
780 AATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATCATCAATATCATTAATCCTAATGAGGAG
* *
112189 AATGTGTTTATAGTGCCTTATCACAAAAAGAA
845 AATGTGTTTATAGCGCCTAATCACAAAAAGAA
112221 TGAATATCAT
Statistics
Matches: 3187, Mismatches: 310, Indels: 118
0.88 0.09 0.03
Matches are distributed among these distances:
883 117 0.04
884 846 0.27
885 259 0.08
886 41 0.01
887 297 0.09
888 9 0.00
889 638 0.20
890 191 0.06
891 1 0.00
892 1 0.00
893 1 0.00
895 3 0.00
897 5 0.00
898 1 0.00
900 1 0.00
901 2 0.00
902 4 0.00
904 46 0.01
905 273 0.09
906 112 0.04
907 25 0.01
908 307 0.10
909 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (885 bp):
AAGCCTTTGCTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGGT
GCCTAATCCTGAAAAGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAAC
TTTGATTCTATCAAAAATGGTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATAAAAGGTATGTGTTTTGGCTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGGAT
CGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CATGCAGAAGAAAATCATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTATGCCTAATC
CCAAAATGAATGAAGATCATTACTAGAATCCAATTTTGTCTCATTTGAGGCACGAACTTAGACTT
TAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCCTAAT
AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTT
GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGACAGAAAGAAAAGCTTTTCTTGCAAC
ACCAAAGCATCAATGTCGTGTATCCTAATGAAGGGTATGCATTTTTGGTTCCCAATCTTGAAAAG
AATAGAGACTATTATGAGAATCATGCTTGTCTTTTTCAAAGGGATGAACTTTGATATTAAGGAAA
ATAGGGCAAAGAAAAGATTTTCACACTAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGA
ATGTGTTTATAGCGCCTAATCACAAAAAGAACGAAGATGG
Found at i:111903 original size:158 final size:156
Alignment explanation
Indices: 111716--112537 Score: 411
Period size: 158 Copynumber: 5.2 Consensus size: 156
111706 GATGAGAATG
* * *
111716 TGTTTATTGTGCCTAATCCCAAAATGAATGAAGATTATTACTAGAATCCAAGTTTGTCTCATTTG
1 TGTTTATGGTGCCTAAT-CCAAAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTG
* * * *
111781 AGGCATGAACTTAGACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTGTTGCAAAACCAAACCATC
65 AGGCACGAACTTAGACTTTAGAAAAATTAGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
111846 AATATCGTGTATCCTAATAAGAAGACTA
130 AATATCGTGTATCCTAATAAG-AGACTA
* ** * * * * *
111874 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATA-TGAGTATTCATGTTTGTCTTATTA
1 TGTTTATGGTGCCTAATCC-AAAAAGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTT
* * * ***** * * * * *
111938 AAGAG-ACAAACTTTGA-TTCT-GTCAAAAACGCCAGAAAAAAAAGCTTTTCTTGCAACATCAAA
64 GAG-GCACGAACTTAGACTT-TAG--AAAAATTAGTGGAAAGAAAGCCTTTCTTGCAAAACCAAA
* * *
112000 GCATCAATGTCGTGTATCCTAATGAAGGGTACGCA
125 GCATCAATATCGTGTATCCTAAT-AAGAG-AC-TA
* * ** * * * * ** *
112035 T-TTT-TGGTTCCCAATCTTGAAAAGAAT-AGAGACTGTTACGAGAATCGATACTTGTCT-TTTT
1 TGTTTATGGTGCCTAATC-CAAAAAGAATGA-AGATTATTACTAGAATCCATGTTTGTCTCATTT
* * * * * ** *** * **
112096 CAAAGGGATGAACTTTGA-TATTAAGGAAAA-TAG-GGCAAAGAAAAGATTTTCACACTAAAGAA
64 --GAGGCACGAACTTAGACT-TT-AGAAAAATTAGTGG-AAAG-AAAGCCTTTCTTGCAAAACCA
* * * * * *
112158 AATCATCAATATCAT-TAATCTTAATGAGGAGAATG
123 AAGCATCAATATCGTGT-ATCCTAAT-AAGAGACTA
* * * *
112193 TGTTTATAGTGCCTTATCACAAAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTG
1 TGTTTATGGTGCCTAATC-CAAAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * **
112258 AGGCACAAACTTAGACTTTACAAAAATTAGTGGGAAGAAAACCTTTGTTGTGAAACCAAAGCATC
65 AGGCACGAACTTAGACTTTAGAAAAATTAGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
* * * * *
112323 AATATCATGTATCATAATGCAGAGAATG
130 AATATCGTGTATCCTAAT-AAGAGACTA
* * ** * * *
112351 TGTTTATAGTGCCTTATCACAAAAAGAATGAAGA-CCTTGCTAGAATCCATGTTTTTCGCATTTG
1 TGTTTATGGTGCCTAATC-CAAAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTG
* * * * **
112415 AGGCACGAACTTAGACTTTACAAAAATTGGTGGCACAA-AAA-ACTTTCTTGCGAAACCAAAATA
65 AGGCACGAACTTAGACTTTAGAAAAATTAGTGG-A-AAGAAAGCCTTTCTTGCAAAACCAAAGCA
*
112478 TCAATAAT-GTGTATCCTAATGAGAAGACGTCA
128 TCAAT-ATCGTGTATCCTAATAAG-AGAC-T-A
*
112510 --TTTATGGAGCCTAATCCTAAAAAGAATG
1 TGTTTATGGTGCCTAATCC-AAAAAGAATG
112538 GGGATCAGTA
Statistics
Matches: 496, Mismatches: 132, Indels: 73
0.71 0.19 0.10
Matches are distributed among these distances:
156 3 0.01
157 121 0.24
158 146 0.29
159 117 0.24
160 101 0.20
161 7 0.01
162 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (156 bp):
TGTTTATGGTGCCTAATCCAAAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGA
GGCACGAACTTAGACTTTAGAAAAATTAGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
ATATCGTGTATCCTAATAAGAGACTA
Found at i:112250 original size:477 final size:474
Alignment explanation
Indices: 111359--112380 Score: 1385
Period size: 477 Copynumber: 2.1 Consensus size: 474
111349 CGTTACTACG
* *
111359 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAGTCCTAAAA
1 AAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAA
* * * * * *
111424 AGAATGGGGATATGTGTGAGTATTCATGTTTGTCTTTTTTAAGAGATAAATTTTGATTCTATCAA
66 AGAATGGGGATATATATGAGTATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATCAA
* ** * *
111489 AAATGGTGAAAGAAAAGCTTTTCTTGCAAAATCAAAGCGTCAATGTCATGTATCCTAATAAAAGG
131 AAACGCAGAAAAAAAAGCTTTTCTTGCAAAATCAAAGCATCAATGTCATGTATCCTAATAAAAGG
* * * * * *
111554 TATGTGTTTTGGCTTCCCAATCTTGAAAAAGTGGAGACTGTCATGAGGATCGATGCTTGTCTTAT
196 TACGTGTTTTGGCTTCCCAATCTTGAAAAAATAGAGACTGTCACGAGAATCGATACTTGTCTTAT
* **
111619 TTATGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAT
261 TTAAGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACACAGAAGAAAAT
* * * * * *
111684 AATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTGTGCCTAATCCCAAAATGAATGAAG
326 AATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAG
* ** *
111749 ATTATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAGAAAAATTAGTGG
391 ATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTGG
*
111814 GAAGAAAGCCTTTGTTGCA
456 GAAGAAAACCTTTGTTGCA
* *
111833 AAACCAAACCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
1 AAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAA
*
111898 AGAATGGGGAT-TAATATGAGTATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTGTCA
66 AGAATGGGGATAT-ATATGAGTATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATCA
* * * *
111962 AAAACGCCAGAAAAAAAAGCTTTTCTTGCAACATCAAAGCATCAATGTCGTGTATCCTAATGAAG
130 AAAACG-CAGAAAAAAAAGCTTTTCTTGCAAAATCAAAGCATCAATGTCATGTATCCTAATAAAA
*
112027 GGTACGCAT-TTTTGG-TTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATACTTGT
194 GGTACG--TGTTTTGGCTTCCCAATCTTGAAAA-AATAGAGACTGTCACGAGAATCGATACTTGT
*
112090 CTT-TTTCAAAGGGATGAACTTTGA-TATTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACTA
256 CTTATTT--AAGGGATGAACTTTGACT-TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACAC-A
* * *
112153 -AAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAA
317 GAAGAAAATAATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* *
112217 AGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAA
382 AGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAA
**
112282 AATTAGTGGGAAGAAAACCTTTGTTGTG
447 AATTAGTGGGAAGAAAACCTTTGTTGCA
* * * * * * *
112310 AAACCAAAGCATCAATATCATGTATCATAATGCAG-AGAATGTGTTTATAGTGCCTTATCAC-AA
1 AAACCAAAGCATCAATATCGTGTATCCTAAT-AAGAAGACTATGTTTATGGTGCCTAATC-CTAA
112373 AAAGAATG
64 AAAGAATG
112381 AAGACCTTGC
Statistics
Matches: 479, Mismatches: 58, Indels: 19
0.86 0.10 0.03
Matches are distributed among these distances:
473 1 0.00
474 121 0.25
475 74 0.15
476 35 0.07
477 244 0.51
478 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
AAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAA
AGAATGGGGATATATATGAGTATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATCAA
AAACGCAGAAAAAAAAGCTTTTCTTGCAAAATCAAAGCATCAATGTCATGTATCCTAATAAAAGG
TACGTGTTTTGGCTTCCCAATCTTGAAAAAATAGAGACTGTCACGAGAATCGATACTTGTCTTAT
TTAAGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACACAGAAGAAAAT
AATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAG
ATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTGG
GAAGAAAACCTTTGTTGCA
Found at i:112532 original size:157 final size:158
Alignment explanation
Indices: 112156--112537 Score: 411
Period size: 157 Copynumber: 2.4 Consensus size: 158
112146 CACACTAAAG
* * * * *
112156 AAAATCATCAATATCAT-TAATCTTAATG-AGGAGAATGTGTTTATAGTGCCTTATCACAAAAAG
1 AAAA-CATCAATATCATGT-ATCATAATGCA-GAGAACGTATTTATAGAGCCTAATCACAAAAAG
* *
112219 AATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAA
63 AATGAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAAA
* * * *
112284 TTAGTGGGAAGAAAACCTTTGTTGTGAAACC
128 TTAGTGGCAAGAAAAACTTTCTTGCGAAACC
* * * * *
112315 AAAGCATCAATATCATGTATCATAATGCAGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT
1 AAAACATCAATATCATGTATCATAATGCAGAGAACGTATTTATAGAGCCTAATCACAAAAAGAAT
* * * * *
112380 GAAGA-CCTTGCTAGAATCCATGTTTTTCGCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
66 GAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAAATTA
112444 GTGGCACA-AAAAACTTTCTTGCGAAACC
131 GTGGCA-AGAAAAACTTTCTTGCGAAACC
* * * *
112472 AAAATATCAATAAT-GTGTATCCTAATG-AGA-AGACGTCATTTATGGAGCCTAATC-CTAAAAA
1 AAAACATCAAT-ATCATGTATCATAATGCAGAGA-ACGT-ATTTATAGAGCCTAATCAC-AAAAA
112533 GAATG
62 GAATG
112538 GGGATCAGTA
Statistics
Matches: 194, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
155 1 0.01
156 7 0.04
157 118 0.61
158 63 0.32
159 5 0.03
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (158 bp):
AAAACATCAATATCATGTATCATAATGCAGAGAACGTATTTATAGAGCCTAATCACAAAAAGAAT
GAAGATCATTACTAGAATCCATGTTTGTCGCATTTGAGGCACAAACTTAGACTTTACAAAAATTA
GTGGCAAGAAAAACTTTCTTGCGAAACC
Found at i:112584 original size:634 final size:633
Alignment explanation
Indices: 111685--112842 Score: 1562
Period size: 634 Copynumber: 1.8 Consensus size: 633
111675 GAAGAAAATA
* * * * * *
111685 ATCAATATCATTTATCCTAGTGATGAGAATGTGTTTATTGTGCCTAATCCCAAAATGAATGAAGA
1 ATCAATATCATGTATCATAATGATGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGA
* * * * *
111750 TTATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAGAAAAATTAGTGGG
66 TCATTACTAGAATCCAAGTTTGTCGCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGC
** * *
111815 AAGAAAGCCTTTGTTGCAAAACCAAACCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTA
131 AAGAAAAACTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGACTA-GTTTA
* * * * *
111880 TGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTTGTCTTATTAAAGAGAC
195 TGGAGCCTAATCCTAAAAAGAATGGGGATCAATATGACTATTCATGTTTGCCTTATTAAAGAGAC
* *
111945 AAACTTTGATTCTGTCAAAAACGCCAGAAAAAAAAGCTTTTCTTGCAACATCAAAGCATCAATGT
260 AAACTTTGATTCTATCAAAAACGCCAGAAAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGT
*
112010 C-GTGTATCCTAATGAAGGGTACGCAT-TTTTGG-TTCCCAATCTTGAAAAGAATAGAGACTGTT
325 CAG-GTATCCTAATGAAGGGTA--CATGTTTTGGCTTCCCAATATTGAAAAGAATAGAGACTGTT
* * *
112072 ACGAGAATCGATACTTGTCTTTTTCAAAGGGATGAACTTTGATATTAAGGAAAATAGG-GCAAAG
387 ACGAGAATCGATACTTATCTTTTT-AAAGGGATAAACTTTAATATTAAGGAAAATAGGAG-AAAG
* * * *
112136 AAAAGATTTTCACACTAAAGAAAATCATCAATATCATTAATCTTAATG-AGGAGAATGTGTTTAT
450 AAAAAATTTTCACACAAAAGAAAATCATCAACATCATTAATCCTAATGCA-GAGAATGTGTTTAT
112200 AGTGCCTTATCACAAAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA
514 AGTGCCTTATCACAAAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA
112265 AACTTAGACTTTACAAAAATTAGTGGGAAGAAAACCTTTGTTGTGAAACCAAAGC
579 AACTTAGACTTTACAAAAATTAGTGGGAAGAAAACCTTTGTTGTGAAACCAAAGC
*
112320 ATCAATATCATGTATCATAATGCA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAG
1 ATCAATATCATGTATCATAATG-ATGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAG
* * * * *
112384 A-CCTTGCTAGAATCCATGTTTTTCGCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
65 ATCATTACTAGAATCCAAGTTTGTCGCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGG
* * *
112448 CACA-AAAAACTTTCTTGCGAAACCAAAATATCAATAAT-GTGTATCCTAATGAGAAGACGTCA-
130 CA-AGAAAAACTTTCTTGCAAAACCAAAACATCAAT-ATCGTGTATCCTAATAAGAAGAC-T-AG
* * **
112510 TTTATGGAGCCTAATCCTAAAAAGAATGGGGATCAGTATGACTATTTATGTTTGCCTTATTTTAG
191 TTTATGGAGCCTAATCCTAAAAAGAATGGGGATCAATATGACTATTCATGTTTGCCTTATTAAAG
* * ** * * *
112575 AGGCAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCA
256 AGACAAACTTTGATTCTATCAAAAACGCCAGAAAAAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * * *
112640 ATGTCAGGTATCCTAATGAAGGGTACATGTTTTGGCTTCCCAATATTGAAACGACTGGAGAGTGT
321 ATGTCAGGTATCCTAATGAAGGGTACATGTTTTGGCTTCCCAATATTGAAAAGAATAGAGACTGT
* * * *
112705 TACGAGAATCGATTCTTATCTTTTTTAAGGGATAAATTTTAATTTTAAGGAAAATAGGAGAAAGA
386 TACGAGAATCGATACTTATCTTTTTAAAGGGATAAACTTTAATATTAAGGAAAATAGGAGAAAGA
** * * * *
112770 AAAAATTTTCATGCAAAAGCAAATCATCAACGTCATTTATCCTAATGCAGAGAATGTTTTTATAG
451 AAAAATTTTCACACAAAAGAAAATCATCAACATCATTAATCCTAATGCAGAGAATGTGTTTATAG
112835 TGCCTTAT
516 TGCCTTAT
112843 TGATGAAAAC
Statistics
Matches: 449, Mismatches: 64, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
632 3 0.01
633 100 0.22
634 283 0.63
635 61 0.14
636 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (633 bp):
ATCAATATCATGTATCATAATGATGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGA
TCATTACTAGAATCCAAGTTTGTCGCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGC
AAGAAAAACTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGACTAGTTTAT
GGAGCCTAATCCTAAAAAGAATGGGGATCAATATGACTATTCATGTTTGCCTTATTAAAGAGACA
AACTTTGATTCTATCAAAAACGCCAGAAAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
AGGTATCCTAATGAAGGGTACATGTTTTGGCTTCCCAATATTGAAAAGAATAGAGACTGTTACGA
GAATCGATACTTATCTTTTTAAAGGGATAAACTTTAATATTAAGGAAAATAGGAGAAAGAAAAAA
TTTTCACACAAAAGAAAATCATCAACATCATTAATCCTAATGCAGAGAATGTGTTTATAGTGCCT
TATCACAAAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAG
ACTTTACAAAAATTAGTGGGAAGAAAACCTTTGTTGTGAAACCAAAGC
Found at i:113832 original size:157 final size:158
Alignment explanation
Indices: 113545--113833 Score: 377
Period size: 157 Copynumber: 1.8 Consensus size: 158
113535 TCAGTTATCC
*
113545 CAAAAAGAATGAAGATCATTGCTAGAATCCAGGTTTGTCTTATTGGAGGCACAAACTTAGACTTT
1 CAAAAAGAATGAAGATCATTGCTAGAATCCAGGTTTGTCGTATTGGAGGCACAAACTTAGACTTT
* **
113610 ACAAAAATTGATGGAAAGAAAGCCTTTGATGCAAAATGAAAACATCAATATCATGTATCCTAATG
66 ACAAAAATTGATGGAAAGAAAGCCTTTCATGCAAAACCAAAACATCAATATCATGTATCCTAATG
113675 AGGAGAATGTATTTATAGTGCTTAATCA
131 AGGAGAATGTATTTATAGTGCTTAATCA
* * * * * *
113703 CAAAATGAATGAAGGTCATTAG-TGGAATCCATGTTTGTCGTATTTGAGGCAC-GACTTAGACTT
1 CAAAAAGAATGAAGATCATT-GCTAGAATCCAGGTTTGTCGTATTGGAGGCACAAACTTAGACTT
* * * * ** * *
113766 TACAAAAATTGGTGGGAAA-AATGCCTTTCTTGCGAAACCAAAATTTTAGTATCATGTATCCTAA
65 TACAAAAATTGAT-GGAAAGAAAGCCTTTCATGCAAAACCAAAACATCAATATCATGTATCCTAA
113830 TGAG
129 TGAG
113834 AAGACTTCGT
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
157 61 0.55
158 49 0.44
159 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
CAAAAAGAATGAAGATCATTGCTAGAATCCAGGTTTGTCGTATTGGAGGCACAAACTTAGACTTT
ACAAAAATTGATGGAAAGAAAGCCTTTCATGCAAAACCAAAACATCAATATCATGTATCCTAATG
AGGAGAATGTATTTATAGTGCTTAATCA
Found at i:115371 original size:158 final size:158
Alignment explanation
Indices: 115049--115373 Score: 409
Period size: 158 Copynumber: 2.1 Consensus size: 158
115039 TGTCATTTAT
* * * *
115049 CCTAATAAGGAGAATGTGTTTATAGTGCCTAATCCCAAAAAGAATAGAGATCATTACTAGAATCC
1 CCTAATGAGGAGAATGTATTTATAGTACCTAATCACAAAAAGAATAGAGATCATTACTAGAATCC
* * * *
115114 ATGCTTGTCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTGTT
66 ATGCTTGTCGCAATTGACGCACAAACTGAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCTT
* * *
115179 GCGAAACCAAAGCATCAATATCGTGTAT
131 GCGAAACCAAAACATCAATATCGTGAAA
* * * *
115207 CGTAATGAGGAGAATGTATTTATAGTACCTAATCACAAAATGAAT-GAAGATCATTAGTAGAGTC
1 CCTAATGAGGAGAATGTATTTATAGTACCTAATCACAAAAAGAATAG-AGATCATTACTAGAATC
* ** * * * * *
115271 CATGTTTGTCGCGTTTGACGCACGAACTGAGACTTTTCAAAAATTGGTGGGAAAAATGCTTTTCT
65 CATGCTTGTCGCAATTGACGCACAAACTGAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCT
* *
115336 TGCGAAGCCAAAATATCAATATCGTGAAA
130 TGCGAAACCAAAACATCAATATCGTGAAA
115365 CCTAATGAG
1 CCTAATGAG
115374 AAGACTTCAT
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
157 1 0.01
158 139 0.99
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (158 bp):
CCTAATGAGGAGAATGTATTTATAGTACCTAATCACAAAAAGAATAGAGATCATTACTAGAATCC
ATGCTTGTCGCAATTGACGCACAAACTGAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCTT
GCGAAACCAAAACATCAATATCGTGAAA
Found at i:115410 original size:158 final size:157
Alignment explanation
Indices: 115049--115410 Score: 397
Period size: 158 Copynumber: 2.3 Consensus size: 157
115039 TGTCATTTAT
* * *
115049 CCTAATAAGGAGAATGTGTTTATAGTGCCTAATCCCAAAAAGAAT-AGAGATCATTACTAGAATC
1 CCTAATGAGAAGAATGTATTTATAGTGCCTAAT-CC-AAAAGAATGAGAGATCATTACTAGAATC
* * * *
115113 CATGCTTGTCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTGT
64 CATGCTTGTCGCAATTGACGCACAAACTGAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCT
* * *
115178 TGCGAAACCAAAGCATCAATATCGTGTAT
129 TGCGAAACCAAAACATCAATATCGTGAAA
* * * * *
115207 CGTAATGAGGAGAATGTATTTATAGTACCTAATCACAAAATGAATGA-AGATCATTAGTAGAGTC
1 CCTAATGAGAAGAATGTATTTATAGTGCCTAATC-CAAAA-GAATGAGAGATCATTACTAGAATC
* ** * * * * *
115271 CATGTTTGTCGCGTTTGACGCACGAACTGAGACTTTTCAAAAATTGGTGGGAAAAATGCTTTTCT
64 CATGCTTGTCGCAATTGACGCACAAACTGAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCT
* *
115336 TGCGAAGCCAAAATATCAATATCGTGAAA
129 TGCGAAACCAAAACATCAATATCGTGAAA
* *
115365 CCTAATGAGAAGACT-TCATTTATGGTGCCTAATCCTGAAAAGAATG
1 CCTAATGAGAAGAATGT-ATTTATAGTGCCTAATCC--AAAAGAATG
115411 GGAATTAGTA
Statistics
Matches: 170, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
157 7 0.04
158 158 0.93
159 5 0.03
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (157 bp):
CCTAATGAGAAGAATGTATTTATAGTGCCTAATCCAAAAGAATGAGAGATCATTACTAGAATCCA
TGCTTGTCGCAATTGACGCACAAACTGAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCTTG
CGAAACCAAAACATCAATATCGTGAAA
Found at i:117354 original size:12 final size:11
Alignment explanation
Indices: 117332--117407 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
117322 AGAGAAAGAA
*
117332 GAGAGAGGAGG
1 GAGATAGGAGG
117343 GATGATAGGAGG
1 GA-GATAGGAGG
*
117355 AGAGACAGGA--
1 -GAGATAGGAGG
*
117365 GAGATAGTA--
1 GAGATAGGAGG
117374 GAGATAGGAGG
1 GAGATAGGAGG
117385 GATGATAGGAGG
1 GA-GATAGGAGG
*
117397 AGAGACAGGAG
1 -GAGATAGGAG
117408 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:117364 original size:24 final size:24
Alignment explanation
Indices: 117331--117416 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
117321 AAGAGAAAGA
*
117331 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
117355 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
117373 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
117397 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
117417 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:117383 original size:42 final size:42
Alignment explanation
Indices: 117322--117440 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
117312 TAGCCCTTAA
* *
117322 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
117364 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
117406 AGAGATAATAGAGAGAGGAGGGACGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
117441 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:125238 original size:12 final size:11
Alignment explanation
Indices: 125216--125291 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
125206 AGAGAAAGAA
*
125216 GAGAGAGGAGG
1 GAGATAGGAGG
125227 GATGATAGGAGG
1 GA-GATAGGAGG
*
125239 AGAGACAGGA--
1 -GAGATAGGAGG
*
125249 GAGATAGTA--
1 GAGATAGGAGG
125258 GAGATAGGAGG
1 GAGATAGGAGG
125269 GATGATAGGAGG
1 GA-GATAGGAGG
*
125281 AGAGACAGGAG
1 -GAGATAGGAG
125292 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:125248 original size:24 final size:24
Alignment explanation
Indices: 125215--125300 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
125205 AAGAGAAAGA
*
125215 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
125239 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
125257 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
125281 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
125301 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:125267 original size:42 final size:42
Alignment explanation
Indices: 125206--125324 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
125196 TGGCCCTCAA
* *
125206 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
125248 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
125290 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
125325 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:126776 original size:16 final size:16
Alignment explanation
Indices: 126755--126790 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
126745 AAAAGGGAAA
*
126755 AAGTAAAAACACTTAC
1 AAGTAAAAACACGTAC
126771 AAGTAAAAACACGTAC
1 AAGTAAAAACACGTAC
126787 AAGT
1 AAGT
126791 GAGAAAGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17
Consensus pattern (16 bp):
AAGTAAAAACACGTAC
Found at i:129154 original size:42 final size:42
Alignment explanation
Indices: 129093--129211 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
129083 TAGCCCTCAA
* * *
129093 AGAGAAAGAAGAGAGAGGAGGGGTGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
129135 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
129177 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
129212 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:137158 original size:92 final size:92
Alignment explanation
Indices: 137035--137238 Score: 372
Period size: 92 Copynumber: 2.2 Consensus size: 92
137025 TGTTTTTTAA
* * *
137035 CATGGACCATAGCAAAAATGCAAGTAAGTGCATGTGTGTGCTTATGACAACATTAAACTAGGGAT
1 CATGGAACATAGAAAAAATGCAAGTAAGTGCATGTGTGTGCTTATGACAACATTAAACCAGGGAT
137100 TTATGCATGTATGAAGCATGGAAAATG
66 TTATGCATGTATGAAGCATGGAAAATG
*
137127 CATGGAATATAGAAAAAATGCAAGTAAGTGCATGTGTGTGCTTATGACAACATTAAACCAGGGAT
1 CATGGAACATAGAAAAAATGCAAGTAAGTGCATGTGTGTGCTTATGACAACATTAAACCAGGGAT
137192 TTATGCATGTATGAAGCATGGAAAATG
66 TTATGCATGTATGAAGCATGGAAAATG
137219 CATGGAACATAGAAAAAATG
1 CATGGAACATAGAAAAAATG
137239 AATGAACAAA
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 107 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.25
Consensus pattern (92 bp):
CATGGAACATAGAAAAAATGCAAGTAAGTGCATGTGTGTGCTTATGACAACATTAAACCAGGGAT
TTATGCATGTATGAAGCATGGAAAATG
Found at i:138194 original size:52 final size:51
Alignment explanation
Indices: 138116--138254 Score: 179
Period size: 51 Copynumber: 2.7 Consensus size: 51
138106 ATTTGCCTGC
* * *
138116 ATGTATCGATACATTGAAGAATGTATCGATATATTTGGGTCAAAAACCCAGA
1 ATGTATCGATATAATGAAGAATGTATCGATATATTTAGGTC-AAAACCCAGA
* * *
138168 ATGTATCGATATAATGAAGAATGTATCAATATAGTTAGGTCAAAACCCAGG
1 ATGTATCGATATAATGAAGAATGTATCGATATATTTAGGTCAAAACCCAGA
** * *
138219 ATGTATTAATATAATGAAAAATGTATCGATACATTT
1 ATGTATCGATATAATGAAGAATGTATCGATATATTT
138255 TCTTTCTAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
51 39 0.52
52 36 0.48
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (51 bp):
ATGTATCGATATAATGAAGAATGTATCGATATATTTAGGTCAAAACCCAGA
Found at i:138234 original size:51 final size:52
Alignment explanation
Indices: 138116--138245 Score: 163
Period size: 52 Copynumber: 2.5 Consensus size: 52
138106 ATTTGCCTGC
* * * * * *
138116 ATGTATCGATACATTGAAGAATGTATCGATATATTTGGGTCAAAAACCCAGA
1 ATGTATCAATATAATGAAGAATGTATCAATATAGTTAGGTCAAAAACCCAGA
* *
138168 ATGTATCGATATAATGAAGAATGTATCAATATAGTTAGGTC-AAAACCCAGG
1 ATGTATCAATATAATGAAGAATGTATCAATATAGTTAGGTCAAAAACCCAGA
* *
138219 ATGTATTAATATAATGAAAAATGTATC
1 ATGTATCAATATAATGAAGAATGTATC
138246 GATACATTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
51 33 0.48
52 36 0.52
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (52 bp):
ATGTATCAATATAATGAAGAATGTATCAATATAGTTAGGTCAAAAACCCAGA
Found at i:139827 original size:52 final size:52
Alignment explanation
Indices: 139771--139991 Score: 205
Period size: 52 Copynumber: 4.2 Consensus size: 52
139761 AAGGTCTACG
* * * * *
139771 ACATTGGGCTTAAAGATGATAAGA-GTGCCAATGTACTAATTCAAGGCCAGCA
1 ACATTGGACTTAAAGATGAGAA-ACGTGCCAATATGCTGATTCAAGGCCAGCA
** * * * *
139823 ACATTAAACTTAAA-AGTGATAAAGGTGCCAACATGCTTATTCAAGGCCAGCA
1 ACATTGGACTTAAAGA-TGAGAAACGTGCCAATATGCTGATTCAAGGCCAGCA
* *
139875 ACATTGGACTTAGAGATGAGAAACGTGCCAATATGCTGATTCAAGGCTAGCA
1 ACATTGGACTTAAAGATGAGAAACGTGCCAATATGCTGATTCAAGGCCAGCA
* *** * * *
139927 ATATCAAACTTAAAGATGAGAAGA-GTGTCAATGTGCTGATTCAAGGCCAGCG
1 ACATTGGACTTAAAGATGAGAA-ACGTGCCAATATGCTGATTCAAGGCCAGCA
*
139979 ACATTGGGCTTAA
1 ACATTGGACTTAA
139992 GGAAAAAAGA
Statistics
Matches: 136, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
51 2 0.01
52 132 0.97
53 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.24
Consensus pattern (52 bp):
ACATTGGACTTAAAGATGAGAAACGTGCCAATATGCTGATTCAAGGCCAGCA
Found at i:139927 original size:104 final size:104
Alignment explanation
Indices: 139771--139991 Score: 259
Period size: 104 Copynumber: 2.1 Consensus size: 104
139761 AAGGTCTACG
* * *
139771 ACATTGGGCTTAAAGATGATAAGAGTGCCAATGTACTAATTCAAGGCCAGCAACATTAAACTTAA
1 ACATTGGGCTTAAAGATGAGAAGAGTGCCAATATACTAATTCAAGGCCAGCAACATCAAACTTAA
*
139836 A-AGTGATAAAG-GTGCCAACATGCTTATTCAAGGCCAGCA
66 AGA-TGA-AAAGAGTGCCAACATGCTGATTCAAGGCCAGCA
* * * * * *
139875 ACATTGGACTTAGAGATGAGAA-ACGTGCCAATATGCTGATTCAAGGCTAGCAATATCAAACTTA
1 ACATTGGGCTTAAAGATGAGAAGA-GTGCCAATATACTAATTCAAGGCCAGCAACATCAAACTTA
* * ** *
139939 AAGATGAGAAGAGTGTCAATGTGCTGATTCAAGGCCAGCG
65 AAGATGAAAAGAGTGCCAACATGCTGATTCAAGGCCAGCA
139979 ACATTGGGCTTAA
1 ACATTGGGCTTAA
139992 GGAAAAAAGA
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
103 4 0.04
104 92 0.95
105 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.24
Consensus pattern (104 bp):
ACATTGGGCTTAAAGATGAGAAGAGTGCCAATATACTAATTCAAGGCCAGCAACATCAAACTTAA
AGATGAAAAGAGTGCCAACATGCTGATTCAAGGCCAGCA
Found at i:140106 original size:57 final size:59
Alignment explanation
Indices: 139950--140106 Score: 183
Period size: 57 Copynumber: 2.7 Consensus size: 59
139940 AGATGAGAAG
* * * * * * * *
139950 AGTGTCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAGGAAAAAAGATTTGGCA
1 AGTGCCAATGTGTTGATTTAAGGCCAACAACATCGGGCTTGAGGAAAAAAGATTTGACA
* * * * *
140009 AGTGCCAATGTGTTGATTTAAGGCTAACTACTTCGAGCTTGA-GAAAAAAGGTTTGAC-
1 AGTGCCAATGTGTTGATTTAAGGCCAACAACATCGGGCTTGAGGAAAAAAGATTTGACA
140066 AGTGCCAATGTGTTGATTTAAGGCCAACAACATCGGGCTTG
1 AGTGCCAATGTGTTGATTTAAGGCCAACAACATCGGGCTTG
140107 GAAGGAGATG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
57 37 0.45
58 13 0.16
59 32 0.39
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (59 bp):
AGTGCCAATGTGTTGATTTAAGGCCAACAACATCGGGCTTGAGGAAAAAAGATTTGACA
Found at i:140217 original size:33 final size:33
Alignment explanation
Indices: 140115--140462 Score: 271
Period size: 33 Copynumber: 10.7 Consensus size: 33
140105 TGGAAGGAGA
** *
140115 TGCCACCGACTTGTGTGGGCTTT-CGAGAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
* * *
140147 TGCCACCAACTGGTGTGGGCTTT--AGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
*
140178 TGCCACCGACTTGTGTGGGCTTTAAAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
* * * *
140211 TGCCACCGACTTGTGTAGGCTTTATAAAAGAGC
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
** * *
140244 TATCACTGACTTGTGTGGGCTTTATAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
* * * * ** *
140277 TACCA-CTATCCTATGTGGGCTTTGTGAAAATGGT
1 TGCCACCGA-CTTGTGTGGGCTTT-AAAAAAGGGT
* * * *
140311 CGCCACCAACTTGTATGGGC-TT-AAAAGGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
* *
140342 TGCCACCGACTTGTATGGGCTTT--TAAAGGGTT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGG-T
*** * *
140374 TGCCATTAACTTATGTAGGCTTTAAAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
* * * *
140407 AGCCATCGACTTATGTGGGCTTTAAAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
*
140440 TGTCACCGACTTGTGTGGGCTTT
1 TGCCACCGACTTGTGTGGGCTTT
140463 GAAAGGGGTG
Statistics
Matches: 250, Mismatches: 57, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
31 55 0.22
32 42 0.17
33 127 0.51
34 24 0.10
35 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTAAAAAAGGGT
Found at i:140915 original size:120 final size:119
Alignment explanation
Indices: 140520--141111 Score: 637
Period size: 120 Copynumber: 4.9 Consensus size: 119
140510 GGACTTTGTA
* * * * * * **
140520 ACAGAGTTATGAACTTTGAAAAGGGAGCCATGGAGTTGTGGACTTT-GAAAAAGGATGCCATGGA
1 ACAGAGTTATGGACTTT-AAAAGGGTGCCACGAAGTTGTGGACTTTAAAAAAAGGGTGCCACAGA
* * * *
140584 GTTGTGGACTT---TAAA-AGGATGCCACAGAGTTATGGACTTAAAAAAGGGTGCC
65 GTTGTGGACTTAAAAAAAGAGGGTGCCATAGAGTTATGGACTT-AAAATGGGTGCC
* * * *
140636 ACGGAGTTATGGATTTTAAAAGGGTGCCACAGAA-TTGTGGACTTTAAAAAGAGGGTGCCACGGA
1 ACAGAGTTATGGACTTTAAAAGGGTGCCAC-GAAGTTGTGGACTTTAAAAAAAGGGTGCCACAGA
* *
140700 GTTGTGGACTTAAAAAAAAGAGGGTGCCATGGACTTATGGATCTTCAAAA-GGGTGCC
65 GTTGTGGACTT-AAAAAAAGAGGGTGCCATAGAGTTATGGA-CTT-AAAATGGGTGCC
* * * * *
140757 ACAAAGTTATGGATTTTAAAAAGGTACCAC-AGAGTTGTGGACTTTAAAAAGAGGGTGCCACAGA
1 ACAGAGTTATGGACTTTAAAAGGGTGCCACGA-AGTTGTGGACTTTAAAAAAAGGGTGCCACAGA
* *
140821 GTTGTGGACTTAAAAAAAGAGGGTGCCATGGAGTTATGGACCTTAAAATGGGTTCC
65 GTTGTGGACTTAAAAAAAGAGGGTGCCATAGAGTTATGGA-CTTAAAATGGGTGCC
* *
140877 ACAGAGTTGTGGACTTTAAAAGGGTGCCACGAAGTTGTGGACTTAAAAAAAAAGGGTGCCAC-GA
1 ACAGAGTTATGGACTTTAAAAGGGTGCCACGAAGTTGTGGACTT-TAAAAAAAGGGTGCCACAG-
* * *
140941 AGTTGTGGACTTAAAAAAA-AAGGTGCCATAGAGTTATGGACCTTAAAACGGGTGCT
64 AGTTGTGGACTTAAAAAAAGAGGGTGCCATAGAGTTATGGA-CTTAAAATGGGTGCC
** * * * * *
140997 AGGGAATTGTAGACTTTAAAAGGGTGCCACGAAGTTGTGGACTTAAAAAAAAGGGTGCCACAAAG
1 ACAGAGTTATGGACTTTAAAAGGGTGCCACGAAGTTGTGGACTTTAAAAAAAGGGTGCCACAGAG
* * *
141062 TTATGGATTTAAAGAAAAGAGTGTGCCATAGAGTTATGGACTATAAAATG
66 TTGTGGACTTAAA-AAAAGAGGGTGCCATAGAGTTATGGACT-TAAAATG
141112 ATGCCACTGA
Statistics
Matches: 412, Mismatches: 46, Indels: 31
0.84 0.09 0.06
Matches are distributed among these distances:
115 22 0.05
116 41 0.10
119 35 0.08
120 157 0.38
121 150 0.36
122 7 0.02
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (119 bp):
ACAGAGTTATGGACTTTAAAAGGGTGCCACGAAGTTGTGGACTTTAAAAAAAGGGTGCCACAGAG
TTGTGGACTTAAAAAAAGAGGGTGCCATAGAGTTATGGACTTAAAATGGGTGCC
Found at i:141080 original size:31 final size:30
Alignment explanation
Indices: 140520--141405 Score: 459
Period size: 29 Copynumber: 29.7 Consensus size: 30
140510 GGACTTTGTA
* * * *
140520 ACAGAGTTATGAACTTT-GAAAAGGGAGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
** * *
140549 ATGGAGTTGTGGACTTTGAAAAAGGATGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
** *
140579 ATGGAGTTGTGGACTTT--AAAAGGATGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
*
140607 ACAGAGTTATGGAC-TTAAAAAAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
* * *
140636 ACGGAGTTATGGA-TTT-TAAAAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
*
140664 ACAGAATTGTGGACTTTAAAAAGAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAA-AGGGTGCC
* *
140695 ACGGAGTTGTGGACTTAAAAAAAAGAGGGTGCC
1 ACAGAGTTGTGGACTT--TAAAAA-AGGGTGCC
** * * *
140728 ATGGACTTATGGA-TCTT-CAAAAGGGTGCC
1 ACAGAGTTGTGGACT-TTAAAAAAGGGTGCC
* * * *
140757 ACAAAGTTATGGA-TTTTAAAAA-GGTACC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
140785 ACAGAGTTGTGGACTTTAAAAAGAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAA-AGGGTGCC
*
140816 ACAGAGTTGTGGACTTAAAAAAAGAGGGTGCC
1 ACAGAGTTGTGGACTT-TAAAAA-AGGGTGCC
** * * * *
140848 ATGGAGTTATGGACCTT-AAAATGGGTTCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
140877 ACAGAGTTGTGGACTTT--AAAAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
*
140905 AC-GAAGTTGTGGACTTAAAAAAAAAGGGTGCC
1 ACAG-AGTTGTGGACTT--TAAAAAAGGGTGCC
* *
140937 AC-GAAGTTGTGGACTTAAAAAAAAAGGTGCC
1 ACAG-AGTTGTGGACTT-TAAAAAAGGGTGCC
* * * * *
140968 ATAGAGTTATGGACCTT-AAAACGGGTGCT
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
** * *
140997 AGGGAATTGTAGACTTT--AAAAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
*
141025 AC-GAAGTTGTGGACTTAAAAAAAAGGGTGCC
1 ACAG-AGTTGTGGACTT-TAAAAAAGGGTGCC
* *
141056 ACAAAGTTATGGA-TTTAAAGAAAAGAGTGTGCC
1 ACAGAGTTGTGGACTTT-AA-AAAAG-G-GTGCC
* * * * *
141089 ATAGAGTTATGGAC--TATAAAATGATGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
* * * * *
141117 ACTGAGTCGTGAACTTTGAAAAAA-GATACC
1 ACAGAGTTGTGGACTTT-AAAAAAGGGTGCC
* ** * *
141147 ACTGAGTCATGGACTTTGAAGAAAGGATGCC
1 ACAGAGTTGTGGACTTT-AAAAAAGGGTGCC
* ** * *
141178 ATAGAGTAATGGACTTT-GAAAAGAGATGCC
1 ACAGAGTTGTGGACTTTAAAAAAG-GGTGCC
** * * * *
141208 ATTGAGTTATGGACTTGAAGAAAGGATGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
** * * *
141238 ACTTAGTCGTGGACTTT--AGAAGGGATGCT
1 ACAGAGTTGTGGACTTTAAAAAAGGG-TGCC
** * * *
141267 ACTA-AGTCATGGACTTT-GAAAAGGATTCC
1 AC-AGAGTTGTGGACTTTAAAAAAGGGTGCC
* *
141296 ACTA-AGTGGTGGACTTT-GAAAAGGGATGCC
1 AC-AGAGTTGTGGACTTTAAAAAAGGG-TGCC
* * *
141326 ACTGAGTCGTGGACTTT-GAAAAGGGTGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
* *
141355 ACTGAGTCGTGGACTTTAAAAAA-GGTGCC
1 ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
* * *
141384 ACTGAGTCGTGGACTTTGAAAA
1 ACAGAGTTGTGGACTTTAAAAA
141406 GAGCTTTCCT
Statistics
Matches: 692, Mismatches: 122, Indels: 86
0.77 0.14 0.10
Matches are distributed among these distances:
27 4 0.01
28 121 0.17
29 202 0.29
30 144 0.21
31 123 0.18
32 57 0.08
33 41 0.06
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.24
Consensus pattern (30 bp):
ACAGAGTTGTGGACTTTAAAAAAGGGTGCC
Found at i:141338 original size:88 final size:89
Alignment explanation
Indices: 141097--141405 Score: 342
Period size: 88 Copynumber: 3.5 Consensus size: 89
141087 CCATAGAGTT
* * * * * *
141097 ATGGACTAT-AAAATGATGCCACTGAGTCGTGAACTTTGAAAAAAGATACCACTGAGTCATGGAC
1 ATGGACTTTGAAAAGGATGCCACTGAGTCGTGGACTTTGAAAAAGGATGCCACTGAGTCGTGGAC
* *
141161 TTTGAAGAAAGGATGCCA-TAGAGTA
66 TTTG-AGAAGGGATGCCACTA-AGTC
* ** *
141186 ATGGACTTTGAAAAGAGATGCCATTGAGTTATGGAC-TTGAAGAAAGGATGCCACTTAGTCGTGG
1 ATGGACTTTGAAAAG-GATGCCACTGAGTCGTGGACTTTGAA-AAAGGATGCCACTGAGTCGTGG
*
141250 ACTTT-AGAAGGGATGCTACTAAGTC
64 ACTTTGAGAAGGGATGCCACTAAGTC
* * * *
141275 ATGGACTTTGAAAAGGATTCCACTAAGTGGTGGACTTTGAAAAGGGATGCCACTGAGTCGTGGAC
1 ATGGACTTTGAAAAGGATGCCACTGAGTCGTGGACTTTGAAAAAGGATGCCACTGAGTCGTGGAC
* *
141340 TTTGAAAAGGG-TGCCACTGAGTC
66 TTTGAGAAGGGATGCCACTAAGTC
* *
141363 GTGGACTTTAAAAAAGG-TGCCACTGAGTCGTGGACTTTGAAAA
1 ATGGACTTT-GAAAAGGATGCCACTGAGTCGTGGACTTTGAAAA
141406 GAGCTTTCCT
Statistics
Matches: 185, Mismatches: 28, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
88 81 0.44
89 54 0.29
90 11 0.06
91 39 0.21
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (89 bp):
ATGGACTTTGAAAAGGATGCCACTGAGTCGTGGACTTTGAAAAAGGATGCCACTGAGTCGTGGAC
TTTGAGAAGGGATGCCACTAAGTC
Found at i:142212 original size:32 final size:33
Alignment explanation
Indices: 142157--142222 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 33
142147 AAAAGTTGAC
142157 TTGACAAGAAAGGTGATACGATTTTATTT-ATTT
1 TTGACAAGAAAGGTGATACGA-TTTATTTCATTT
* *
142190 TTGATAAGAAA-GTGATATGATTTATTTCATTT
1 TTGACAAGAAAGGTGATACGATTTATTTCATTT
142222 T
1 T
142223 CAACAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 7 0.23
32 13 0.43
33 10 0.33
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (33 bp):
TTGACAAGAAAGGTGATACGATTTATTTCATTT
Found at i:142778 original size:17 final size:17
Alignment explanation
Indices: 142758--142803 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
142748 TTGCACCTTT
142758 TTTTTTTGTGCTTTCAC
1 TTTTTTTGTGCTTTCAC
*
142775 TTTTTTTGTG-TTTCTC
1 TTTTTTTGTGCTTTCAC
*
142791 -ATTTTTGTGCTTT
1 TTTTTTTGTGCTTT
142804 TGCCTTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 8 0.31
16 8 0.31
17 10 0.38
ACGTcount: A:0.04, C:0.13, G:0.13, T:0.70
Consensus pattern (17 bp):
TTTTTTTGTGCTTTCAC
Found at i:145073 original size:46 final size:46
Alignment explanation
Indices: 145006--145102 Score: 187
Period size: 46 Copynumber: 2.1 Consensus size: 46
144996 AGAATCATTC
145006 CTCATTTCAGCAATGTTGGCTTGCCCTTTTTCTTTCATATTTACTA
1 CTCATTTCAGCAATGTTGGCTTGCCCTTTTTCTTTCATATTTACTA
145052 CTCATTTCAGCAATGTTGGCTTGCCCTTTTTCTTTCATATTTACTA
1 CTCATTTCAGCAATGTTGGCTTGCCCTTTTTCTTTCATATTTACTA
145098 C-CATT
1 CTCATT
145103 AATTCCATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 4 0.08
46 47 0.92
ACGTcount: A:0.18, C:0.25, G:0.10, T:0.47
Consensus pattern (46 bp):
CTCATTTCAGCAATGTTGGCTTGCCCTTTTTCTTTCATATTTACTA
Found at i:148538 original size:79 final size:78
Alignment explanation
Indices: 148375--148539 Score: 196
Period size: 79 Copynumber: 2.1 Consensus size: 78
148365 TCATTCATGC
148375 TTTTATTTCCGAGGGATACTCCAATCGCGGTTTTATTTCCAAAACACCAATTTTCTACAATCGGG
1 TTTTATTTCCGAGGGATACTCCAATCGCGGTTTTATTTCCAAAACACCAATTTTCTACAATC--G
*
148440 GATATTCCAACCCCG
64 GATACTCCAACCCCG
* * * *
148455 --TTATTTCTGAGGGGATACTCTAACTC-TGGTTTTATTTTCAAAACACCAATTTT-TCACAATC
1 TTTTATTTCCGA-GGGATACTCCAA-TCGCGGTTTTATTTCCAAAACACCAATTTTCT-ACAATC
148516 -GATACTCCAACCCCG
63 GGATACTCCAACCCCG
148531 ATTTTATTT
1 -TTTTATTT
148540 TTAAAACACC
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
76 14 0.19
78 10 0.14
79 48 0.65
80 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (78 bp):
TTTTATTTCCGAGGGATACTCCAATCGCGGTTTTATTTCCAAAACACCAATTTTCTACAATCGGA
TACTCCAACCCCG
Found at i:148586 original size:48 final size:46
Alignment explanation
Indices: 148486--148587 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 46
148476 AACTCTGGTT
*
148486 TTATTTTCAAAACACCAATTTTTCACAATCGATACTCCAACCCCGATT
1 TTATTTTCAAAACACCAATTTTTCACAATCGATACTCCAACCCC-A-C
* *
148534 TTATTTTTAAAACACCAATTTTTCACAATCGGGAATACTCTAACCCC-C
1 TTATTTTCAAAACACCAATTTTTCACAATC--G-ATACTCCAACCCCAC
148582 TTATTT
1 TTATTT
148588 CTGAGAGGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
48 35 0.73
50 1 0.02
51 12 0.25
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.36
Consensus pattern (46 bp):
TTATTTTCAAAACACCAATTTTTCACAATCGATACTCCAACCCCAC
Found at i:148589 original size:127 final size:127
Alignment explanation
Indices: 148389--148643 Score: 368
Period size: 127 Copynumber: 2.0 Consensus size: 127
148379 ATTTCCGAGG
* * * * *
148389 GATACTCCAATCGCGGTTTTATTTCCAAAACACCAATTTTCTACAATCGGGGATATTCCAACCCC
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCTACAATCGGGAATACTCCAACCCC
* * * * * *
148454 GTTATTTCTGAGGGGATACTCTAACTCTGGTTTTATTTTCAAAACACCAATTTTTCACAATC
66 CTTATTTCTGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATC
** *
148516 GATACTCCAACCCCGATTTTATTTTTAAAACACCAATTTT-TCACAATCGGGAATACTCTAACCC
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCT-ACAATCGGGAATACTCCAACCC
148580 CCTTATTTCTGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATC
65 CCTTATTTCTGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATC
148643 G
1 G
148644 GTGATACTAC
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
126 1 0.01
127 112 0.99
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.34
Consensus pattern (127 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCTACAATCGGGAATACTCCAACCCC
CTTATTTCTGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATC
Found at i:148614 original size:79 final size:79
Alignment explanation
Indices: 148516--148853 Score: 396
Period size: 79 Copynumber: 4.3 Consensus size: 79
148506 TTTCACAATC
* *
148516 GATACTCCAACCCCGATTTTATTTTTAAAACACCAATTTTTCACAATCGGGAATACTCTAACCCC
1 GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCTAACCCC
*
148581 CTTATTTCTGAGAG
66 GTTATTTCTGAGAG
* *
148595 GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGTGATACTAC-AACCT
1 GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACT-CTAACCC
* * *
148659 CATTATTTTTGAGGG
65 CGTTATTTCTGAGAG
* ** * * *
148674 GATACTCCAACCCCGGTTTTATTTTCAAAACATAAATTTTTCATAATCGGGGATACTTTAATCCC
1 GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCTAACCCC
148739 GTTATTT-TCGA-AGG
66 GTTATTTCT-GAGA-G
* * * * * * *
148753 GATACTCCAACCCCAATTTTATTTTTAAAACATCAATTTTCCACCATTGGGGATACTCCAACCCC
1 GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCTAACCCC
148818 GTTATTTCTGAG-G
66 GTTATTTCTGAGAG
* * *
148831 GCGTACTCCGACCCCGTTTTTAT
1 G-ATACTCCAACCCCGATTTTAT
148854 CTCCAAAATA
Statistics
Matches: 220, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
78 3 0.01
79 215 0.98
80 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.34
Consensus pattern (79 bp):
GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCTAACCCC
GTTATTTCTGAGAG
Found at i:153772 original size:9 final size:9
Alignment explanation
Indices: 153760--153820 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
153750 CTCTCTCTAT
153760 TATCTCTCC
1 TATCTCTCC
153769 TATCTCTCC
1 TATCTCTCC
* *
153778 T-CCTAT-C
1 TATCTCTCC
*
153785 -ATCCCTCC
1 TATCTCTCC
*
153793 TATCTCTAC
1 TATCTCTCC
*
153802 TATTTCTCC
1 TATCTCTCC
153811 TATCTCTCC
1 TATCTCTCC
153820 T
1 T
153821 CGTATCATCC
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (9 bp):
TATCTCTCC
Found at i:153774 original size:18 final size:18
Alignment explanation
Indices: 153747--153817 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
153737 CCTGTCATCC
*
153747 CTCCTCTCTCTATTATCT
1 CTCCTATCTCTATTATCT
*
153765 CTCCTATCTCTCCTCCTATCAT
1 CTCCTATCTCT-AT--TATC-T
* *
153787 CCCTCCTATCTCTACTATTT
1 --CTCCTATCTCTATTATCT
153807 CTCCTATCTCT
1 CTCCTATCTCT
153818 CCTCGTATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
18 21 0.50
19 1 0.02
20 1 0.02
21 7 0.17
22 1 0.02
24 11 0.26
ACGTcount: A:0.13, C:0.42, G:0.00, T:0.45
Consensus pattern (18 bp):
CTCCTATCTCTATTATCT
Found at i:153778 original size:42 final size:42
Alignment explanation
Indices: 153731--153850 Score: 168
Period size: 42 Copynumber: 2.9 Consensus size: 42
153721 CTTCTTCTCT
* * *
153731 TCTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATC
1 TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATC
*
153773 TCTCCTCCTATCATCCCTCCTATCTCTACTATTTCTCCTATC
1 TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATC
* * * *
153815 TCTCCTCGTATCATCCCTTCTATCTCTTCTTTCTCT
1 TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
153851 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.11, C:0.42, G:0.02, T:0.45
Consensus pattern (42 bp):
TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATC
Found at i:153780 original size:12 final size:12
Alignment explanation
Indices: 153765--153799 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
153755 TCTATTATCT
153765 CTCCTATCTCTC
1 CTCCTATCTCTC
153777 CTCCTATCATC-C
1 CTCCTATC-TCTC
153789 CTCCTATCTCT
1 CTCCTATCTCT
153800 ACTATTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:159871 original size:13 final size:13
Alignment explanation
Indices: 159853--159878 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
159843 CATTTTTTGG
159853 TGTATCGATACAT
1 TGTATCGATACAT
159866 TGTATCGATACAT
1 TGTATCGATACAT
159879 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:159893 original size:32 final size:33
Alignment explanation
Indices: 159833--159896 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
159823 TACAAGCTAA
**
159833 TGTATCGATACATTTTTTGGTGTATCGATACAT
1 TGTATCGATACATACTTTGGTGTATCGATACAT
159866 TGTATCGATACATACTTT-GTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
159897 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:162260 original size:21 final size:20
Alignment explanation
Indices: 162209--162260 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
162199 TTGTTTTTGA
162209 AAGTGATTTTGATGAAAAACG
1 AAGT-ATTTTGATGAAAAACG
* *
162230 ATGTAATTTGTAGTGAAAAAC-
1 AAGTATTTTG-A-TGAAAAACG
162251 AAGTATTTTG
1 AAGTATTTTG
162261 CAAAAGATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 5 0.20
21 12 0.48
22 8 0.32
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (20 bp):
AAGTATTTTGATGAAAAACG
Found at i:162400 original size:13 final size:13
Alignment explanation
Indices: 162382--162420 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
162372 ATAAACCCCC
*
162382 TGTATCGATACAG
1 TGTATCGATACAA
*
162395 TGTATCGATATAA
1 TGTATCGATACAA
*
162408 TATATCGATACAA
1 TGTATCGATACAA
162421 AGAAAGATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:162435 original size:20 final size:20
Alignment explanation
Indices: 162410--162485 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
162400 CGATATAATA
162410 TATCGATACAAAGAAAGATG
1 TATCGATACAAAGAAAGATG
**
162430 TATCGATACATTGAATTTTCCAGATG
1 TATCGATACAAAGAA------AGATG
* *
162456 TATCGATACACAGAAACATG
1 TATCGATACAAAGAAAGATG
162476 TATCGATACA
1 TATCGATACA
162486 TTTTGGAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 27 0.60
26 18 0.40
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (20 bp):
TATCGATACAAAGAAAGATG
Found at i:168602 original size:13 final size:13
Alignment explanation
Indices: 168584--168609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
168574 CATTTTTTGG
168584 TGTATCGATACAT
1 TGTATCGATACAT
168597 TGTATCGATACAT
1 TGTATCGATACAT
168610 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:168624 original size:32 final size:33
Alignment explanation
Indices: 168564--168627 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
168554 TACAAGCTAA
**
168564 TGTATCGATACATTTTTTGGTGTATCGATACAT
1 TGTATCGATACATACTTTGGTGTATCGATACAT
168597 TGTATCGATACATACTTT-GTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
168628 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:172802 original size:13 final size:13
Alignment explanation
Indices: 172784--172809 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
172774 TACACCAAGT
172784 ATGTATCGATACA
1 ATGTATCGATACA
172797 ATGTATCGATACA
1 ATGTATCGATACA
172810 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:172807 original size:32 final size:33
Alignment explanation
Indices: 172766--172829 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
172756 TAGCCAAACT
* **
172766 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
172798 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
172830 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Done.