Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold372
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1060101
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 9 of 9
Found at i:993172 original size:16 final size:16
Alignment explanation
Indices: 993150--993189 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
993140 ATTAAGTATG
*
993150 ATAAATTTGATTTAAA
1 ATAAATTTAATTTAAA
* *
993166 TTAAATTCAATTTAAA
1 ATAAATTTAATTTAAA
993182 ATAAATTT
1 ATAAATTT
993190 TTAATAATTC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (16 bp):
ATAAATTTAATTTAAA
Found at i:993759 original size:7 final size:7
Alignment explanation
Indices: 993734--993794 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
993724 AAATGATCTA
*
993734 ATATAAT
1 ATATATT
993741 ATATTATT
1 ATA-TATT
993749 -TATATT
1 ATATATT
993755 ATATATT
1 ATATATT
*
993762 ATATAAT
1 ATATATT
*
993769 ATATAAT
1 ATATATT
993776 ATATAATT
1 ATAT-ATT
*
993784 AT-TTTT
1 ATATATT
993790 ATATA
1 ATATA
993795 ATAATATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
6 8 0.18
7 30 0.67
8 7 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
ATATATT
Found at i:993811 original size:21 final size:21
Alignment explanation
Indices: 993734--993812 Score: 65
Period size: 21 Copynumber: 3.8 Consensus size: 21
993724 AAATGATCTA
*
993734 ATATAATATATTATTTATATTAT
1 ATATAA-ATA-TATTTATATAAT
* *
993757 ATAT-TATATA-ATATATAAT
1 ATATAAATATATTTATATAAT
* *
993776 ATATAATTATTTTTATATAAT
1 ATATAAATATATTTATATAAT
993797 AATATAAATA-ATTTAT
1 -ATATAAATATATTTAT
993813 TTTTTAAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
19 11 0.25
20 5 0.11
21 16 0.36
22 8 0.18
23 4 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATATAAATATATTTATATAAT
Found at i:993818 original size:28 final size:28
Alignment explanation
Indices: 993734--993816 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
993724 AAATGATCTA
* * *
993734 ATATAATATATTATTTAT-ATTATATATT
1 ATATAATATATAATATATAATTAT-TTTT
993762 ATATAATATATAATATATAATTATTTTT
1 ATATAATATATAATATATAATTATTTTT
*
993790 ATATAATAATATAA-ATA-ATTTATTTTT
1 ATATAAT-ATATAATATATAATTATTTTT
993817 TAAAACTCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 9 0.18
28 29 0.59
29 11 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
ATATAATATATAATATATAATTATTTTT
Found at i:993889 original size:21 final size:22
Alignment explanation
Indices: 993873--993918 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
993863 GATTAATTCG
993873 ATTTT-CAAATAT-TTTAATTA
1 ATTTTACAAATATATTTAATTA
*
993893 ATTTTACAAATTTATTTAATTTA
1 ATTTTACAAATATATTTAA-TTA
993916 ATT
1 ATT
993919 AATTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 6 0.27
22 5 0.23
23 6 0.27
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTACAAATATATTTAATTA
Found at i:997942 original size:15 final size:15
Alignment explanation
Indices: 997922--997965 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
997912 TCCTAGGAAG
997922 AGCAGCTCTCGGAGA
1 AGCAGCTCTCGGAGA
*
997937 AGCAGCTCTAGGAGA
1 AGCAGCTCTCGGAGA
* *
997952 GGCAGCTCGCGGAG
1 AGCAGCTCTCGGAG
997966 GTGGAGGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.39, T:0.11
Consensus pattern (15 bp):
AGCAGCTCTCGGAGA
Found at i:1000794 original size:23 final size:22
Alignment explanation
Indices: 1000768--1000825 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
1000758 TTTATCTATT
* **
1000768 TATATCATATTTATATTTTTTAA
1 TATATAATATTTATA-TTTAAAA
*
1000791 TATATAATAATTATATTTAAAA
1 TATATAATATTTATATTTAAAA
*
1000813 TATATTATATTTA
1 TATATAATATTTA
1000826 AATTAAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TATATAATATTTATATTTAAAA
Found at i:1000828 original size:15 final size:15
Alignment explanation
Indices: 1000796--1000827 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
1000786 TTTAATATAT
1000796 AATAATTATATTTAA
1 AATAATTATATTTAA
1000811 AATATATTATATTTAA
1 AATA-ATTATATTTAA
1000827 A
1 A
1000828 TTAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAATTATATTTAA
Found at i:1000890 original size:33 final size:33
Alignment explanation
Indices: 1000811--1000892 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 33
1000801 TTATATTTAA
* * *
1000811 AATATATTATATTTAAATTAAATTTTAATATTTT
1 AATATATTATA-TTATATTAAATTTTAATATATC
1000845 AATA-ATTCATATTATA-TAAATTTTTAA-ATATC
1 AATATATT-ATATTATATTAAA-TTTTAATATATC
1000877 AATATATTAATATTAT
1 AATATATT-ATATTAT
1000893 TTTTCGAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
32 11 0.27
33 23 0.56
34 7 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (33 bp):
AATATATTATATTATATTAAATTTTAATATATC
Found at i:1001090 original size:25 final size:23
Alignment explanation
Indices: 1001062--1001107 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
1001052 TAAACAAATT
*
1001062 ATAATCATAAGATATAATATAAAAA
1 ATAAT-ATAA-ATATAAAATAAAAA
*
1001087 ATAATATTAATATAAAATAAA
1 ATAATATAAATATAAAATAAA
1001108 TATATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 3 0.16
25 5 0.26
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
ATAATATAAATATAAAATAAAAA
Found at i:1001101 original size:23 final size:26
Alignment explanation
Indices: 1001073--1001125 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 26
1001063 TAATCATAAG
*
1001073 ATATAATATAAA-AAAT-AA-TATTA
1 ATATAAAATAAATAAATAAATTATTA
*
1001096 ATATAAAATAAATATATAAATTATTA
1 ATATAAAATAAATAAATAAATTATTA
1001122 ATAT
1 ATAT
1001126 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 11 0.44
24 3 0.12
25 2 0.08
26 9 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
ATATAAAATAAATAAATAAATTATTA
Found at i:1001177 original size:27 final size:27
Alignment explanation
Indices: 1001101--1001177 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 27
1001091 TATTAATATA
1001101 AAATAAATATATAAATTATT-AATATTTT
1 AAAT-AAT-TATAAATTATTAAATATTTT
* * *
1001129 AAA-ATTTATATAAATATAAAATATTTT
1 AAATAATTATA-AATTATTAAATATTTT
*
1001156 AAATAATTATAACTTATTAAAT
1 AAATAATTATAAATTATTAAAT
1001178 TATATATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
25 4 0.10
26 7 0.18
27 19 0.49
28 9 0.23
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (27 bp):
AAATAATTATAAATTATTAAATATTTT
Found at i:1001610 original size:19 final size:19
Alignment explanation
Indices: 1001586--1001636 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
1001576 CTAATTTAAT
1001586 ATTTAAATTAAAT-ATATAA
1 ATTTAAATTAAATAATAT-A
*
1001605 ATTTAAA-TAAATAATATG
1 ATTTAAATTAAATAATATA
1001623 ATTTATAATTAAAT
1 ATTTA-AATTAAAT
1001637 TTATTGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 10 0.36
19 13 0.46
20 5 0.18
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTTAAATTAAATAATATA
Found at i:1001612 original size:14 final size:14
Alignment explanation
Indices: 1001578--1001618 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
1001568 AATTTGATCT
*
1001578 AATTT-AATATTTA
1 AATTTAAATATATA
1001591 AA-TTAAATATATA
1 AATTTAAATATATA
*
1001604 AATTTAAATAAATA
1 AATTTAAATATATA
1001618 A
1 A
1001619 TATGATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 2 0.08
13 11 0.46
14 11 0.46
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTAAATATATA
Found at i:1001626 original size:18 final size:19
Alignment explanation
Indices: 1001586--1001636 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
1001576 CTAATTTAAT
1001586 ATTTAAATTAAATATATAA
1 ATTTAAATTAAATATATAA
*
1001605 ATTTAAA-TAAATA-ATATG
1 ATTTAAATTAAATATATA-A
1001623 ATTTATAATTAAAT
1 ATTTA-AATTAAAT
1001637 TTATTGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 3 0.11
18 11 0.39
19 9 0.32
20 5 0.18
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTTAAATTAAATATATAA
Found at i:1001801 original size:25 final size:23
Alignment explanation
Indices: 1001746--1001803 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 23
1001736 ATTATAATTA
1001746 TATTTAAAATATTATATTTATAT
1 TATTTAAAATATTATATTTATAT
1001769 TAATTTTAATAA-ATTAATAATTTATAT
1 T-A-TTTAA-AATATT-AT-ATTTATAT
1001796 TATTTAAA
1 TATTTAAA
1001804 TTTAAATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
23 1 0.03
24 2 0.07
25 13 0.43
26 5 0.17
27 9 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTTAAAATATTATATTTATAT
Found at i:1001807 original size:15 final size:16
Alignment explanation
Indices: 1001785--1001878 Score: 67
Period size: 15 Copynumber: 6.2 Consensus size: 16
1001775 TAATAAATTA
1001785 ATAATTTATATTATTT
1 ATAATTTATATTATTT
*
1001801 A-AATTTAAATTATTT
1 ATAATTTATATTATTT
* *
1001816 ATATATTTATAATATAT
1 ATA-ATTTATATTATTT
*
1001833 -TAATAT-TATT-TTT
1 ATAATTTATATTATTT
1001846 AT-A-TTATATTATATT
1 ATAATTTATATTAT-TT
* *
1001861 TTAATTTAT-TTTTTT
1 ATAATTTATATTATTT
1001876 ATA
1 ATA
1001879 TCATATAATT
Statistics
Matches: 59, Mismatches: 11, Indels: 17
0.68 0.13 0.20
Matches are distributed among these distances:
12 1 0.02
13 7 0.12
14 5 0.08
15 24 0.41
16 8 0.14
17 14 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATAATTTATATTATTT
Found at i:1001835 original size:27 final size:26
Alignment explanation
Indices: 1001760--1001860 Score: 84
Period size: 27 Copynumber: 3.8 Consensus size: 26
1001750 TAAAATATTA
*
1001760 TATTTATATTAATTTTAATAAATT-AAT
1 TATTTATA-T-ATTTTAATATATTAAAT
*
1001787 AATTTATAT-TATTTAA-AT-TTAAAT
1 TATTTATATAT-TTTAATATATTAAAT
1001811 TATTTATATATTTATAATATATTAATAT
1 TATTTATATATTT-TAATATATTAA-AT
* * *
1001839 TATTTTTATATTATATTATATT
1 TATTTATATATTTTAATATATT
1001861 TTAATTTATT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
23 2 0.03
24 15 0.25
25 9 0.15
26 3 0.05
27 19 0.31
28 13 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
TATTTATATATTTTAATATATTAAAT
Found at i:1001885 original size:27 final size:29
Alignment explanation
Indices: 1001735--1001899 Score: 100
Period size: 28 Copynumber: 5.7 Consensus size: 29
1001725 ATATTATACG
*
1001735 TATTATAATTATAT-TTAAAATATTATATTTA
1 TATTAT-ATTATATATT--AATATTATTTTTA
* *
1001766 TATTA-ATT-T-TAATAA-ATTAATAATTTA
1 TATTATATTATATATTAATATT-AT-TTTTA
* *
1001793 TATTAT-TTAAAT-TTAA-ATTATTTATA
1 TATTATATTATATATTAATATTATTTTTA
*
1001819 TATT-TATAATATATTAATATTATTTTTA
1 TATTATATTATATATTAATATTATTTTTA
*
1001847 TATTATATTATATTTTAAT-TTATTTTTTTA
1 TATTATATTATATATTAATATTA--TTTTTA
1001877 TATCATATAATTATAT-TTAATAT
1 TAT--TAT-ATTATATATTAATAT
1001900 AGAGTTGTCG
Statistics
Matches: 108, Mismatches: 10, Indels: 30
0.73 0.07 0.20
Matches are distributed among these distances:
25 4 0.04
26 15 0.14
27 19 0.18
28 24 0.22
29 16 0.15
30 9 0.08
31 5 0.05
32 8 0.07
33 8 0.07
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (29 bp):
TATTATATTATATATTAATATTATTTTTA
Found at i:1002786 original size:16 final size:15
Alignment explanation
Indices: 1002767--1002796 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1002757 AATATATTAA
1002767 TTATTTTTATAATTTT
1 TTATTTTTA-AATTTT
1002783 TTATTTTTAAATTT
1 TTATTTTTAAATTT
1002797 ACTTGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTTTAAATTTT
Found at i:1003389 original size:18 final size:18
Alignment explanation
Indices: 1003368--1003404 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1003358 GTGTGTGTAT
1003368 ATATATATAATATGGTAA
1 ATATATATAATATGGTAA
* *
1003386 ATATATATGATGTGGTAA
1 ATATATATAATATGGTAA
1003404 A
1 A
1003405 ATTTTTATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (18 bp):
ATATATATAATATGGTAA
Found at i:1003976 original size:68 final size:69
Alignment explanation
Indices: 1003895--1004026 Score: 171
Period size: 68 Copynumber: 1.9 Consensus size: 69
1003885 TTTTTATAAA
* **
1003895 TTAATTAAATTTAAAAAA-TATAATAAAT-AA-TAATATATTAATCATTATTTTTTAATAAAAAA
1 TTAATTAAATTTAAAAAATTAT-ATAAATAAATTAAAATATTAATCATT-TTTTAAAATAAAAAA
1003957 TAATAT
64 TAATAT
* * *
1003963 TTAATTAACTTTAAAAAATTATATTAATAAATTAAAATATTAATTATTTTTTAAAATAAAAAAT
1 TTAATTAAATTTAAAAAATTATATAAATAAATTAAAATATTAATCATTTTTTAAAATAAAAAAT
1004027 TAAATTAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
68 22 0.40
69 19 0.35
70 14 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (69 bp):
TTAATTAAATTTAAAAAATTATATAAATAAATTAAAATATTAATCATTTTTTAAAATAAAAAATA
ATAT
Found at i:1004115 original size:117 final size:112
Alignment explanation
Indices: 1003952--1004229 Score: 368
Period size: 113 Copynumber: 2.4 Consensus size: 112
1003942 TTTTTTAATA
* * *
1003952 AAAAATAATATTTAATTAACTTT-AAAAAATTATATTAATAAATTAAAATATTAA-T-TAT-TTT
1 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATATTAATTGTATATTT
*
1004013 TTAAAATAAAAAATTAAATTAAAAATGT-TTATTCTTATTATTATTTAATAAAATT
66 TT---AT-AAAAA-TAAA--AAAAATGTATTATTATTATTATT-TTTAATAAAA-T
1004068 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATATTAATTGTATATTT
1 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATATTAATTGTATATTT
* *
1004133 TTATAAAAATAAAAAATATTTATTATTATTATTATTTTTAATAAAAT
66 TTATAAAAATAAAAAAAATGTATTATTATTATTATTTTTAATAAAAT
*
1004180 AAAAATGATATTTAATTAAATTTAAAAAAATTTACATTAACAAATTAAAA
1 AAAAATAATATTTAATTAAATTTAAAAAAA-TTACATTAACAAATTAAAA
1004230 AAATAACATT
Statistics
Matches: 149, Mismatches: 7, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
112 30 0.20
113 35 0.23
114 13 0.09
115 4 0.03
116 27 0.18
117 31 0.21
118 1 0.01
119 3 0.02
120 5 0.03
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (112 bp):
AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATATTAATTGTATATTT
TTATAAAAATAAAAAAAATGTATTATTATTATTATTTTTAATAAAAT
Found at i:1004227 original size:23 final size:23
Alignment explanation
Indices: 1004201--1004265 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
1004191 TTAATTAAAT
1004201 TTAAAAAAATTTACATTAACAAA
1 TTAAAAAAATTTACATTAACAAA
* **
1004224 TTAAAAAAA-TAACATTTAAGGAA
1 TTAAAAAAATTTACA-TTAACAAA
1004247 TTAAAAAAATTTATCATTA
1 TTAAAAAAATTTA-CATTA
1004266 TTCAGATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 4 0.11
23 24 0.69
24 5 0.14
25 2 0.06
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (23 bp):
TTAAAAAAATTTACATTAACAAA
Found at i:1004254 original size:113 final size:111
Alignment explanation
Indices: 1003952--1004256 Score: 303
Period size: 112 Copynumber: 2.7 Consensus size: 111
1003942 TTTTTTAATA
* * * * * *
1003952 AAAAATAATATTTAATTAACTTT-AAAAAATTATATTAATAAATTAAAATATTAATTATTTTTTA
1 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAA-AATAA--ATTGTATA
* * * * * *
1004016 AAATAAAAAATTAAATTAAAAATGTTTATTCTTATTATTATTTAATAAAATT
63 GAAT-TATAA--AAATAAAAAATATTTATTATTATTATTATTTAATAAAATT
* * ***
1004068 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATATTAATTGTATATTT
1 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAAAATAAATTGTATAGAA
1004133 TTATAAAAATAAAAAATATTTATTATTATTATTATTTTTAATAAAA-T
66 TTATAAAAATAAAAAATATTTATTATTATTATTA--TTTAATAAAATT
*
1004180 AAAAATGATATTTAATTAAATTTAAAAAAATTTACATTAACAAATTAAAAAAATAACATT-TA-A
1 AAAAATAATATTTAATTAAATTTAAAAAAA-TTACATTAACAAATT-AAAAAATAA-ATTGTATA
*
1004243 GGAATTAAAAAAAT
63 -GAATTATAAAAAT
1004257 TTATCATTAT
Statistics
Matches: 159, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
111 25 0.16
112 30 0.19
113 29 0.18
114 25 0.16
115 3 0.02
116 24 0.15
117 23 0.14
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (111 bp):
AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAAAATAAATTGTATAGAA
TTATAAAAATAAAAAATATTTATTATTATTATTATTTAATAAAATT
Found at i:1004590 original size:81 final size:81
Alignment explanation
Indices: 1004435--1004595 Score: 270
Period size: 80 Copynumber: 2.0 Consensus size: 81
1004425 TTGAGAAATC
* * *
1004435 GCCATCGAAAATAATAATTTCTCAACTTGATTTTGGGAAATCACTACATCAGATGGCGATTTCCC
1 GCCATCGAAAATAATAATTTCTCAACTTGATGTTGGGAAATCACCACATCAGATGGCGATTTCCA
1004500 CAACGAAAAAAATGTT
66 CAACGAAAAAAATGTT
* *
1004516 GCCATCGAAAATGATAATTTCTCAACTTGATGTT-GGAAATCACCACATCAGATGGCGATTTTCA
1 GCCATCGAAAATAATAATTTCTCAACTTGATGTTGGGAAATCACCACATCAGATGGCGATTTCCA
1004580 CAACGAAAAAAATGTT
66 CAACGAAAAAAATGTT
1004596 TTCTCAAAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
80 43 0.57
81 32 0.43
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (81 bp):
GCCATCGAAAATAATAATTTCTCAACTTGATGTTGGGAAATCACCACATCAGATGGCGATTTCCA
CAACGAAAAAAATGTT
Found at i:1004770 original size:120 final size:121
Alignment explanation
Indices: 1004631--1004985 Score: 486
Period size: 120 Copynumber: 2.9 Consensus size: 121
1004621 AAAAAATATT
* *
1004631 ATTATAATAAAAACTTTTTTTAATTTAAAATTTTTATTTTTTAAAAAATAATAATTAATATTTTA
1 ATTATAATAAAAAC-CTTTTTATTTTAAAATTTTTATTTTTTAAAAAATAATAATTAATATTTTA
1004696 ATTTGTTAATGTAAATTTTTAAACTTAATTAAATATTATTTTT-ATTTTATT-AAAA
65 ATTTGTTAATGTAAATTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAA
*
1004751 ATTATAATAAAAACCTTTTTATTTTAAATTTTTTATTTTTATAAAAACATAATAATTAA-ATTTT
1 ATTATAATAAAAACCTTTTTATTTTAAAATTTTTATTTTT-TAAAAA-ATAATAATTAATATTTT
*
1004815 AATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAA
64 AATTTGTTAATGTAAATTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAA
* * **
1004873 ATAATAATAATAAACCATTTTTATTTTTATTTAATTTTT-TTTATTTTTAAAA-AATAATTAATA
1 ATTATAATAA-AAACC-TTTTTA-TTTTA--AAATTTTTATTT-TTTAAAAAATAATAATTAATA
* *
1004936 TTTTAATTTGTTAATATAAATTATTTTAAAGTTAATTAAATATTATTTTT
60 TTTTAATTTGTTAATGTAAA-T-TTTTAAACTTAATTAAATATTATTTTT
1004986 TATTAAAATA
Statistics
Matches: 210, Mismatches: 12, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
119 23 0.11
120 68 0.32
121 19 0.09
122 13 0.06
123 5 0.02
124 15 0.07
125 25 0.12
126 8 0.04
127 34 0.16
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (121 bp):
ATTATAATAAAAACCTTTTTATTTTAAAATTTTTATTTTTTAAAAAATAATAATTAATATTTTAA
TTTGTTAATGTAAATTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAA
Found at i:1006961 original size:23 final size:23
Alignment explanation
Indices: 1006931--1006976 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1006921 CTCAGTAAGA
*
1006931 ATCTATACATTTATTATATTTAT
1 ATCTATACATTCATTATATTTAT
1006954 ATCTATACATTCATTATATTTAT
1 ATCTATACATTCATTATATTTAT
1006977 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (23 bp):
ATCTATACATTCATTATATTTAT
Found at i:1007032 original size:39 final size:39
Alignment explanation
Indices: 1006975--1007066 Score: 114
Period size: 39 Copynumber: 2.3 Consensus size: 39
1006965 CATTATATTT
*
1006975 ATTTAAAAATAAAATTTATATATCAGTCATATCTTTTGA
1 ATTTAAAAATAAAATTTATATATCAGTCATATCTTTTAA
* * *
1007014 ATTTAAACAA-AAATTTTATATATTAGTCATATTTTTTAA
1 ATTTAAA-AATAAAATTTATATATCAGTCATATCTTTTAA
1007053 ATTCTAATAAATAA
1 ATT-TAA-AAATAA
1007067 TCTATAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
39 35 0.78
40 7 0.16
41 3 0.07
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.45
Consensus pattern (39 bp):
ATTTAAAAATAAAATTTATATATCAGTCATATCTTTTAA
Found at i:1007480 original size:14 final size:14
Alignment explanation
Indices: 1007461--1007487 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1007451 TTATTTTTAA
1007461 AAATAAAAAAATTT
1 AAATAAAAAAATTT
1007475 AAATAAAAAAATT
1 AAATAAAAAAATT
1007488 ATTATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATAAAAAAATTT
Found at i:1007722 original size:15 final size:16
Alignment explanation
Indices: 1007699--1007729 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
1007689 ATTATTATGT
1007699 TTTTAAAAATAAAAAA
1 TTTTAAAAATAAAAAA
1007715 TTTT-AAAATAAAAAA
1 TTTTAAAAATAAAAAA
1007730 GGTTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TTTTAAAAATAAAAAA
Found at i:1007727 original size:123 final size:123
Alignment explanation
Indices: 1007391--1007744 Score: 491
Period size: 124 Copynumber: 2.9 Consensus size: 123
1007381 TATTATTTTT
*
1007391 AATAAAAAATAATATTTAATTAAT-TTTAAAGAAATTTATATTAACAAATTAAAATATT-A--AT
1 AATAAAAAATAATATTTAATT-ATGTTT-AA-AAATTTACATTAACAAATTAAAATATTAATTAT
*
1007452 TA--TTTTTAAAAATAAAAAAATTT-AAATAAAAAAATTATTATTT-TTAT--TTTTTAATAA
63 TATGTTTTTAAAAATAAAAAAATTTAAAATAAAAAAGTT-TT-TTTATTATAATTTTTAATAA
* * *
1007509 AAT-TAAAATAATATTTAATTAAGTTTAAAAAATTACATTAACAAATTAAAAT-TTAATTATTAT
1 AATAAAAAATAATATTTAATTATGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTAT
1007572 GTTTTTATAAAAATAAAAAAATTTAAAATAAAAAAGTTTTTTTATTATAATTTTTAATAA
66 G-TTTT-TAAAAATAAAAAAATTTAAAATAAAAAAGTTTTTTTATTATAATTTTTAATAA
1007632 AATAAAAAATAATATTTAATTATGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTAT
1 AATAAAAAATAATATTTAATTATGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTAT
* *
1007697 GTTTTTAAAAATAAAAAATTTTAAAATAAAAAAG-GTTTTTATTATAAT
66 GTTTTTAAAAATAAAAAAATTTAAAATAAAAAAGTTTTTTTATTATAAT
1007745 AATAATTTTT
Statistics
Matches: 212, Mismatches: 10, Indels: 24
0.86 0.04 0.10
Matches are distributed among these distances:
114 2 0.01
115 23 0.11
116 3 0.01
117 23 0.11
118 3 0.01
120 7 0.03
121 23 0.11
122 25 0.12
123 41 0.19
124 50 0.24
125 12 0.06
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (123 bp):
AATAAAAAATAATATTTAATTATGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTAT
GTTTTTAAAAATAAAAAAATTTAAAATAAAAAAGTTTTTTTATTATAATTTTTAATAA
Found at i:1008075 original size:22 final size:23
Alignment explanation
Indices: 1008026--1008087 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
1008016 TTATTTGAAT
1008026 AATGATAATTTTTTTAATTCCTTA
1 AATG-TAATTTTTTTAATTCCTTA
* **
1008050 AATGTTATTTTTTTAATTTGTT-
1 AATGTAATTTTTTTAATTCCTTA
*
1008072 AATGTAAATTTTTTAA
1 AATGTAATTTTTTTAA
1008088 AATTTAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
22 14 0.42
23 15 0.45
24 4 0.12
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.58
Consensus pattern (23 bp):
AATGTAATTTTTTTAATTCCTTA
Found at i:1008287 original size:110 final size:110
Alignment explanation
Indices: 1008062--1008329 Score: 274
Period size: 110 Copynumber: 2.4 Consensus size: 110
1008052 TGTTATTTTT
* * * * *
1008062 TTAATTTGTTAATGTAAATTTTTTAAAATTTAATTAAATATCATTTTTTATTTTATTAAAAATAA
1 TTAATTT-TTAATATAAATTTTTTAAAACTTAATTAAATATTATTTTTAATTTTATAAAAAATAA
* * * ** *
1008127 TAATAATAAGCACTTTTTATTTTTATAAAAACATATAATTAATATT
65 TAATAATAAACACTTTTTAATTTAATAAAAACATATAAAAAATATA
1008173 TTAATTTATTAATAT-AATTTTTTAAAACTTAATTAAATATTATTTTTAATTTTACTAAAAAATA
1 TTAATTT-TTAATATAAATTTTTTAAAACTTAATTAAATATTATTTTTAATTTTA-TAAAAAATA
* **** * *
1008237 ATAATAATAAACCCTTTTTAATTTAATTTTTTA-TTTTAAAAAATA-A
64 ATAATAATAAACACTTTTTAATTTAA-TAAAAACATATAAAAAATATA
* * *
1008283 TTAATATTTTAATATAAATGTTTT-AAAGTTAATAAAATATTATTTTT
1 TTAAT-TTTTAATATAAATTTTTTAAAACTTAATTAAATATTATTTTT
1008330 TATTAAAAAT
Statistics
Matches: 131, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
110 69 0.53
111 60 0.46
112 2 0.02
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (110 bp):
TTAATTTTTAATATAAATTTTTTAAAACTTAATTAAATATTATTTTTAATTTTATAAAAAATAAT
AATAATAAACACTTTTTAATTTAATAAAAACATATAAAAAATATA
Found at i:1010237 original size:21 final size:21
Alignment explanation
Indices: 1010199--1010238 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1010189 AAATTAAAAA
* *
1010199 TATTTTACATTAATATTTATG
1 TATTTTACAATAAAATTTATG
*
1010220 TATTTTATAATAAAATTTA
1 TATTTTACAATAAAATTTA
1010239 AATAAAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
TATTTTACAATAAAATTTATG
Found at i:1011204 original size:16 final size:17
Alignment explanation
Indices: 1011160--1011204 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
1011150 TATAAACAAA
1011160 TTATTAATATATTAAAAT
1 TTATTAA-ATATTAAAAT
1011178 TTATATAAATA-TAAAAT
1 TTAT-TAAATATTAAAAT
1011195 TTATTAAATA
1 TTATTAAATA
1011205 CGATTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.23
17 10 0.38
18 7 0.27
19 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATTAAATATTAAAAT
Found at i:1013281 original size:2 final size:2
Alignment explanation
Indices: 1013274--1013301 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1013264 AAATGTAAAA
1013274 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1013302 TAAAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1014444 original size:22 final size:24
Alignment explanation
Indices: 1014398--1014445 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
1014388 ATAAAAATTT
* *
1014398 TATTTTAATGATAATTTTTTTAAA
1 TATTTTAATGATAATGTATTTAAA
1014422 TATTTTAA-GAT-ATGTATTTAAA
1 TATTTTAATGATAATGTATTTAAA
1014444 TA
1 TA
1014446 GAAAAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.50
23 3 0.14
24 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (24 bp):
TATTTTAATGATAATGTATTTAAA
Found at i:1014900 original size:11 final size:11
Alignment explanation
Indices: 1014884--1015045 Score: 93
Period size: 11 Copynumber: 15.5 Consensus size: 11
1014874 TAATTATTTA
1014884 TATATTTATAT
1 TATATTTATAT
1014895 TATATTTATAT
1 TATATTTATAT
1014906 TATATTTATAT
1 TATATTTATAT
1014917 TAT-TTT-TA-
1 TATATTTATAT
1014925 TAT-TTTA-AT
1 TATATTTATAT
* *
1014934 TATATTTAAAA
1 TATATTTATAT
*
1014945 TATTATATATAT
1 TA-TATTTATAT
* *
1014957 TA-ATATGATAA
1 TATAT-TTATAT
1014968 TA-ATTTATAT
1 TATATTTATAT
1014978 TATA--TATAT
1 TATATTTATAT
*
1014987 TAACATGTTA-AT
1 T-ATAT-TTATAT
1014999 T-TATTTATA-
1 TATATTTATAT
*
1015008 TATTATTT-TTT
1 TA-TATTTATAT
*
1015019 TATA-TCATA-
1 TATATTTATAT
1015028 TATATTTTATAT
1 TATA-TTTATAT
1015040 TATATT
1 TATATT
1015046 GGAAACTTTA
Statistics
Matches: 117, Mismatches: 15, Indels: 38
0.69 0.09 0.22
Matches are distributed among these distances:
8 7 0.06
9 20 0.17
10 24 0.21
11 49 0.42
12 15 0.13
13 2 0.02
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (11 bp):
TATATTTATAT
Found at i:1014912 original size:22 final size:21
Alignment explanation
Indices: 1014882--1015045 Score: 109
Period size: 20 Copynumber: 7.9 Consensus size: 21
1014872 TCTAATTATT
1014882 TATATATTTATATTATATTTA
1 TATATATTTATATTATATTTA
1014903 TATTATATTTATATTAT-TTT-
1 TA-TATATTTATATTATATTTA
1014923 TATAT-TTTA-ATTATATTTA
1 TATATATTTATATTATATTTA
*
1014942 -AAATA-TTATA-TATATTAATA
1 TATATATTTATATTATATT--TA
*
1014962 TGATAATAATTTATATTATATATA
1 T-AT-AT-ATTTATATTATATTTA
*
1014986 T-TAACATGTTA-ATT-TATTTA
1 TAT-ATAT-TTATATTATATTTA
* *
1015006 TATATTATTT-TTTTATA-TCA
1 TATA-TATTTATATTATATTTA
1015026 TATATATTTTATATTATATT
1 TATATA-TTTATATTATATT
1015046 GGAAACTTTA
Statistics
Matches: 113, Mismatches: 9, Indels: 41
0.69 0.06 0.25
Matches are distributed among these distances:
17 5 0.04
18 19 0.17
19 6 0.05
20 24 0.21
21 21 0.19
22 22 0.19
23 2 0.02
24 4 0.04
25 5 0.04
26 5 0.04
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (21 bp):
TATATATTTATATTATATTTA
Found at i:1014948 original size:28 final size:30
Alignment explanation
Indices: 1014889--1014957 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 30
1014879 ATTTATATAT
* *
1014889 TTATATTATA-TTTATATTATATTTATATTA
1 TTAT-TTATATTTTATATTATATTTAAAATA
1014919 TT-TTTATATTTTA-ATTATATTTAAAATA
1 TTATTTATATTTTATATTATATTTAAAATA
*
1014947 TTATATATATT
1 TTATTTATATT
1014958 AATATGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 20 0.59
29 12 0.35
30 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (30 bp):
TTATTTATATTTTATATTATATTTAAAATA
Found at i:1015400 original size:18 final size:19
Alignment explanation
Indices: 1015377--1015430 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
1015367 TTTAATTATT
1015377 TTTAAATTTTTTTATA-AA
1 TTTAAATTTTTTTATATAA
* *
1015395 TTTAAATGATTTTTA-ATAT
1 TTTAAAT-TTTTTTATATAA
*
1015414 TTTATATTTTTTTATAT
1 TTTAAATTTTTTTATAT
1015431 TTAAATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTAAATTTTTTTATATAA
Found at i:1015438 original size:18 final size:18
Alignment explanation
Indices: 1015372--1015438 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
1015362 GTATATTTAA
*
1015372 TTATTTTTAAAT-TTTTT
1 TTATATTTAAATATTTTT
*
1015389 TATAAATTTAAATGA-TTTT
1 T-TATATTTAAAT-ATTTTT
* *
1015408 TAATATTT-TATATTTTT
1 TTATATTTAAATATTTTT
1015425 TTATATTTAAATAT
1 TTATATTTAAATAT
1015439 GTATTTAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.03
17 14 0.37
18 18 0.47
19 5 0.13
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATATTTAAATATTTTT
Found at i:1015445 original size:12 final size:12
Alignment explanation
Indices: 1015428--1015452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1015418 TATTTTTTTA
1015428 TATTTAAATATG
1 TATTTAAATATG
1015440 TATTTAAATATG
1 TATTTAAATATG
1015452 T
1 T
1015453 GTCATATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TATTTAAATATG
Found at i:1015450 original size:37 final size:38
Alignment explanation
Indices: 1015365--1015450 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 38
1015355 GATATAAGTA
*
1015365 TATTTAATTATTTTTAAATTTTTTTATAAATTTAAATGAT
1 TATTTAAATA-TTTTAAATTTTTTTAT-AATTTAAATGAT
*
1015405 T-TTT-AATATTTTATATTTTTTTAT-ATTTAAAT-AT
1 TATTTAAATATTTTAAATTTTTTTATAATTTAAATGAT
1015439 GTATTTAAATAT
1 -TATTTAAATAT
1015451 GTGTCATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
34 2 0.05
35 9 0.22
36 3 0.07
37 20 0.49
38 3 0.07
39 3 0.07
40 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (38 bp):
TATTTAAATATTTTAAATTTTTTTATAATTTAAATGAT
Found at i:1016117 original size:20 final size:21
Alignment explanation
Indices: 1016092--1016134 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1016082 AGTCGAATTA
1016092 AATTT-AATTTAAAATT-TTTT
1 AATTTAAATTT-AAATTATTTT
1016112 AATTTAAATTTAAATTATTTT
1 AATTTAAATTTAAATTATTTT
1016133 AA
1 AA
1016135 AATTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AATTTAAATTTAAATTATTTT
Found at i:1016207 original size:25 final size:25
Alignment explanation
Indices: 1016136--1016208 Score: 69
Period size: 28 Copynumber: 2.8 Consensus size: 25
1016126 TTATTTTAAA
* *
1016136 ATTTTATATTATTATATAA-AATAAT
1 ATTTT-TATTATTAAATAATAAAAAT
*
1016161 A-TTTTATAATTAAATTTAAATAAAAAT
1 ATTTTTATTATTAAA--T-AATAAAAAT
1016188 ATTTTTATTATTAAATAATAA
1 ATTTTTATTATTAAATAATAA
1016209 TTTAAAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
23 8 0.21
24 3 0.08
25 7 0.18
26 3 0.08
27 6 0.15
28 12 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTTTTATTATTAAATAATAAAAAT
Found at i:1016441 original size:16 final size:15
Alignment explanation
Indices: 1016409--1016475 Score: 50
Period size: 16 Copynumber: 4.4 Consensus size: 15
1016399 ATATCATAAA
*
1016409 AAAATATATA-ATA-
1 AAAATATAAATATAT
1016422 AAAATATAAATATATT
1 AAAATATAAATATA-T
* *
1016438 AAAATTTATATATAT
1 AAAATATAAATATAT
1016453 -AAATATAACATAATAT
1 AAAATATAA-AT-ATAT
1016469 ATAAATA
1 A-AAATA
1016476 ATTAATTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 9 0.21
14 9 0.21
15 3 0.07
16 16 0.38
18 5 0.12
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (15 bp):
AAAATATAAATATAT
Found at i:1016471 original size:24 final size:24
Alignment explanation
Indices: 1016425--1016471 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
1016415 TATAATAAAA
** *
1016425 ATATAAATATATTAAAATTTATAT
1 ATATAAATATAACAAAATATATAT
*
1016449 ATATAAATATAACATAATATATA
1 ATATAAATATAACAAAATATATA
1016472 AATAATTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATATAAATATAACAAAATATATAT
Found at i:1016834 original size:19 final size:20
Alignment explanation
Indices: 1016804--1016847 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
1016794 TTATAAAATT
*
1016804 TTAAATATTAAATAAA-TTAA
1 TTAAATATTAAA-AAAGTAAA
1016824 TTAAATA-TAAAAAAGTAAA
1 TTAAATATTAAAAAAGTAAA
1016843 TTAAA
1 TTAAA
1016848 GTAACTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 12 0.55
20 7 0.32
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
TTAAATATTAAAAAAGTAAA
Found at i:1017270 original size:6 final size:6
Alignment explanation
Indices: 1017245--1017325 Score: 55
Period size: 6 Copynumber: 14.2 Consensus size: 6
1017235 AAAATTATTA
* ** * * *
1017245 AAATAT AAAAAT TTATAT AAATAT AAA-AT -ATTTT AAATAT AATTAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
*
1017291 -AATAT -AATAA AATATAT AAATAT -AATAT AAATAT A
1 AAATAT AAATAT AA-ATAT AAATAT AAATAT AAATAT A
1017326 TAAATTATTA
Statistics
Matches: 56, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
4 1 0.02
5 16 0.29
6 34 0.61
7 5 0.09
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
AAATAT
Found at i:1017297 original size:45 final size:45
Alignment explanation
Indices: 1017227--1017340 Score: 122
Period size: 45 Copynumber: 2.5 Consensus size: 45
1017217 TTTAAAATAT
* *
1017227 ATATTATAAAAATTATTAAAATATAA-AAATTTATATAAATATAAA
1 ATATTATAAAAATAATTAAAATATAATAAA-ATATATAAATATAAA
* * * *
1017272 ATATTTTAAATATAATTATAATATAATAAAATATATAAATATAAT
1 ATATTATAAAAATAATTAAAATATAATAAAATATATAAATATAAA
* * *
1017317 ATAAATATATAAATTATTAAAATA
1 AT-ATTATAAAAATAATTAAAATA
1017341 GAAGAAAAAG
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
45 37 0.67
46 18 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (45 bp):
ATATTATAAAAATAATTAAAATATAATAAAATATATAAATATAAA
Found at i:1017683 original size:16 final size:16
Alignment explanation
Indices: 1017652--1017695 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
1017642 CACTTAATTT
*
1017652 ATATAATTAATTTTAAA
1 ATATAA-TATTTTTAAA
1017669 ATATAATATTTTTAAA
1 ATATAATATTTTTAAA
* *
1017685 TTTTAATATTT
1 ATATAATATTT
1017696 ATAATTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATATAATATTTTTAAA
Found at i:1017804 original size:23 final size:22
Alignment explanation
Indices: 1017777--1017826 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 22
1017767 AATAAATCAC
*
1017777 TTTTTATAATTTAATATCTAAAAA
1 TTTTTATAATTAAATA-CT-AAAA
*
1017801 TTTTTATAATTAAATACTCAAA
1 TTTTTATAATTAAATACTAAAA
1017823 TTTT
1 TTTT
1017827 ATTTTCATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.29
23 2 0.08
24 15 0.62
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTTATAATTAAATACTAAAA
Found at i:1018003 original size:25 final size:25
Alignment explanation
Indices: 1017975--1018024 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
1017965 ATTTACTTAG
*
1017975 TTAAATAA-AATTTTAAAATTTTAAA
1 TTAAA-AATAATTTAAAAATTTTAAA
*
1018000 TTAAAAATTATTTAAAAATTTTAAA
1 TTAAAAATAATTTAAAAATTTTAAA
1018025 ATTATTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TTAAAAATAATTTAAAAATTTTAAA
Found at i:1019103 original size:29 final size:29
Alignment explanation
Indices: 1019049--1019104 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
1019039 ATATATTTTG
* * *
1019049 ATATTTTTTATTATTAATATTTATAATTT
1 ATATTTATTATAATTAATATTGATAATTT
1019078 ATATTTATTATAATTAAT-TATGATAAT
1 ATATTTATTATAATTAATAT-TGATAAT
1019105 ATTTATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 1 0.04
29 22 0.96
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (29 bp):
ATATTTATTATAATTAATATTGATAATTT
Found at i:1019106 original size:25 final size:25
Alignment explanation
Indices: 1019055--1019146 Score: 80
Period size: 26 Copynumber: 3.6 Consensus size: 25
1019045 TTTGATATTT
* *
1019055 TTTATTATTAA-TATTTATAATTTATA
1 TTTATTA-TAATTAATTATAA-TAATA
*
1019081 TTTATTATAATTAATTATGATAATA
1 TTTATTATAATTAATTATAATAATA
1019106 TTTATTATACATATAAATTATAATAA-A
1 TTTATTATA-AT-T-AATTATAATAATA
* *
1019133 TATAATATAATTAA
1 TTTATTATAATTAA
1019147 AAATTTATTC
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
24 2 0.04
25 17 0.30
26 18 0.32
27 9 0.16
28 10 0.18
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (25 bp):
TTTATTATAATTAATTATAATAATA
Found at i:1019111 original size:29 final size:26
Alignment explanation
Indices: 1019029--1019111 Score: 64
Period size: 26 Copynumber: 3.0 Consensus size: 26
1019019 AATATTAAGA
* *
1019029 TTATTATTTAATATATTTTGATATTT-T
1 TTATTA-TTAATAT-TTATAATATTTAT
1019056 TTATTATTAATATTTATAAT-TTATAT
1 TTATTATTAATATTTATAATATT-TAT
1019082 TTATTA-TAATTAATTATGATAATATTTAT
1 TTATTATTAA-T-ATT-T-ATAATATTTAT
1019111 T
1 T
1019112 ATACATATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
24 2 0.04
25 9 0.19
26 15 0.32
27 9 0.19
28 1 0.02
29 9 0.19
30 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TTATTATTAATATTTATAATATTTAT
Found at i:1019147 original size:25 final size:26
Alignment explanation
Indices: 1019086--1019147 Score: 65
Period size: 28 Copynumber: 2.4 Consensus size: 26
1019076 TTATATTTAT
* * *
1019086 TATAATT-AATTATGATAATATTTAT
1 TATAATTAAATTATAATAATATATAA
1019111 TATACATATAAATTATAATAA-ATATAA
1 TATA-AT-TAAATTATAATAATATATAA
1019138 TATAATTAAA
1 TATAATTAAA
1019148 AATTTATTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 8 0.26
26 4 0.13
27 9 0.29
28 10 0.32
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TATAATTAAATTATAATAATATATAA
Found at i:1019556 original size:8 final size:8
Alignment explanation
Indices: 1019545--1019570 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1019535 AATTTTTAAA
1019545 ATATTTAT
1 ATATTTAT
1019553 ATATTTAT
1 ATATTTAT
1019561 ATATTTAT
1 ATATTTAT
1019569 AT
1 AT
1019571 TATATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATATTTAT
Found at i:1019576 original size:11 final size:11
Alignment explanation
Indices: 1019560--1019584 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1019550 TATATATTTA
1019560 TATATTTATAT
1 TATATTTATAT
1019571 TATATTTATAT
1 TATATTTATAT
1019582 TAT
1 TAT
1019585 TTTTTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTTATAT
Found at i:1021027 original size:51 final size:51
Alignment explanation
Indices: 1020951--1021053 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
1020941 TTACATAAAT
* *
1020951 GATGACAATTTAAAATCATACATCATCAATAATTTTTTTTG-GATTTTAGAA
1 GATGACAATTTAAAACCATACATCATCAATAAATTTTTTTGAGA-TTTAGAA
1021002 GATGACAATTTAAAACCATACATCATCAATAAATTTTTTTGAGATTTAGAA
1 GATGACAATTTAAAACCATACATCATCAATAAATTTTTTTGAGATTTAGAA
1021053 G
1 G
1021054 TGTAATTGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 47 0.96
52 2 0.04
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (51 bp):
GATGACAATTTAAAACCATACATCATCAATAAATTTTTTTGAGATTTAGAA
Found at i:1022772 original size:3 final size:3
Alignment explanation
Indices: 1022764--1022831 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
1022754 CATTGAGTTA
1022764 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1022812 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
1022832 ATGGATTATA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:1026310 original size:2 final size:2
Alignment explanation
Indices: 1026303--1026328 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1026293 TCAGCTTTTA
1026303 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1026329 TCATCTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1035697 original size:14 final size:14
Alignment explanation
Indices: 1035678--1035706 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1035668 TATACTCAGA
1035678 CATGAAGATACGAT
1 CATGAAGATACGAT
1035692 CATGAAGATACGAT
1 CATGAAGATACGAT
1035706 C
1 C
1035707 GAAAACTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (14 bp):
CATGAAGATACGAT
Found at i:1036436 original size:2 final size:2
Alignment explanation
Indices: 1036431--1036475 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1036421 TACTTGTGTG
1036431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1036473 TA T
1 TA T
1036476 GCGTGTGTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1038274 original size:23 final size:23
Alignment explanation
Indices: 1038248--1038315 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
1038238 TGTTTTTATT
*
1038248 ATATATAAT-GATAAAATTTTAAA
1 ATATATAATAAAT-AAATTTTAAA
1038271 ATAT-TAAATAAATAAATTTTAAA
1 ATATAT-AATAAATAAATTTTAAA
* * *
1038294 AAATATAATAAATTAATATTAA
1 ATATATAATAAATAAATTTTAA
1038316 TTAAATTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 1 0.03
23 34 0.89
24 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (23 bp):
ATATATAATAAATAAATTTTAAA
Found at i:1038569 original size:11 final size:11
Alignment explanation
Indices: 1038555--1038593 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
1038545 TTATATATTT
1038555 ATTATATTAAA
1 ATTATATTAAA
1038566 ATTATATTTAAA
1 ATTATA-TTAAA
1038578 A-TAT-TTAAA
1 ATTATATTAAA
1038587 ATTATAT
1 ATTATAT
1038594 AAATTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 6 0.24
10 3 0.12
11 10 0.40
12 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATTATATTAAA
Found at i:1038573 original size:20 final size:21
Alignment explanation
Indices: 1038548--1038593 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
1038538 TTTTTATTTA
**
1038548 TATATTTATTATA-TTAAAAT
1 TATATTTAAAATATTTAAAAT
1038568 TATATTTAAAATATTTAAAAT
1 TATATTTAAAATATTTAAAAT
1038589 TATAT
1 TATAT
1038594 AAATTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TATATTTAAAATATTTAAAAT
Found at i:1038640 original size:29 final size:30
Alignment explanation
Indices: 1038608--1038672 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
1038598 TTTTATACTG
1038608 TTATATAA-ATTTTAAAATAT-A-TATTTAT
1 TTATATAATA-TTTAAAATATAATTATTTAT
* *
1038636 ATTATATTATATTTAAATTATAATTATTTAT
1 -TTATATAATATTTAAAATATAATTATTTAT
1038667 TTATAT
1 TTATAT
1038673 TTTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 16 0.52
30 8 0.26
31 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
TTATATAATATTTAAAATATAATTATTTAT
Found at i:1038646 original size:16 final size:16
Alignment explanation
Indices: 1038627--1038673 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
1038617 TTTTAAAATA
1038627 TATATTTATATTATAT
1 TATATTTATATTATAT
* *
1038643 TATATTTAAATTATAA
1 TATATTTATATTATAT
1038659 T-TATTTAT-TTATAT
1 TATATTTATATTATAT
1038673 T
1 T
1038674 TTAAATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 6 0.22
15 6 0.22
16 15 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATTTATATTATAT
Found at i:1038663 original size:20 final size:20
Alignment explanation
Indices: 1038640--1038685 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
1038630 ATTTATATTA
1038640 TATTATATTTAAATTAT-AAT
1 TATT-TATTTAAATTATAAAT
* *
1038660 TATTTATTTATATTTTAAAT
1 TATTTATTTAAATTATAAAT
1038680 TATTTA
1 TATTTA
1038686 ATATTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTATTTAAATTATAAAT
Found at i:1039182 original size:11 final size:11
Alignment explanation
Indices: 1039157--1039217 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 11
1039147 AAGTTATAAA
*
1039157 ATATTT-TTAT
1 ATATTTATTTT
1039167 ATATTTATTTT
1 ATATTTATTTT
*
1039178 ATATTTATATT
1 ATATTTATTTT
*
1039189 ATATTT-TAATT
1 ATATTTAT-TTT
*
1039200 ATTTTTA-TTT
1 ATATTTATTTT
1039210 ATATTTAT
1 ATATTTAT
1039218 ATAAATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
10 15 0.36
11 27 0.64
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATATTTATTTT
Found at i:1039186 original size:6 final size:6
Alignment explanation
Indices: 1039166--1039219 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
1039156 AATATTTTTA
*
1039166 TATATT TAT-TT TATATT TATA-T TATATT T-TAAT TAT-TT T-TATT
1 TATATT TATATT TATATT TATATT TATATT TATATT TATATT TATATT
1039209 TATATT TATAT
1 TATATT TATAT
1039220 AAATTATTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
4 1 0.02
5 19 0.46
6 21 0.51
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TATATT
Found at i:1039186 original size:32 final size:32
Alignment explanation
Indices: 1039150--1039223 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
1039140 ATAATAAAAG
*
1039150 TTATAAAATATTTTTATATATTTAT-TTTATAT
1 TTATAAAATATTTTAAT-TATTTATATTTATAT
** *
1039182 TTATATTATATTTTAATTATTTTTATTTATAT
1 TTATAAAATATTTTAATTATTTATATTTATAT
1039214 TTATATAAAT
1 TTATA-AAAT
1039224 TATTACATCG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
31 6 0.18
32 26 0.76
33 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (32 bp):
TTATAAAATATTTTAATTATTTATATTTATAT
Found at i:1039439 original size:6 final size:6
Alignment explanation
Indices: 1039428--1039470 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
1039418 TTTCTCAGAC
*
1039428 ATATAA ATATAA ATA-AT ATATAA ATTATTAA ATATAA ATATAA
1 ATATAA ATATAA ATATAA ATATAA A-TA-TAA ATATAA ATATAA
1039471 TTTATGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 4 0.12
6 20 0.62
7 4 0.12
8 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
ATATAA
Found at i:1041747 original size:18 final size:20
Alignment explanation
Indices: 1041692--1041749 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
1041682 TAGATATGAT
1041692 ATAAAAATATGATATAATATAA
1 ATAAAAATAT-ATATAA-ATAA
*
1041714 AT-AAAATATATTTAAA-AA
1 ATAAAAATATATATAAATAA
1041732 ATAAAAATATA-ATAAATA
1 ATAAAAATATATATAAATA
1041750 TGATATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 8 0.25
19 10 0.31
20 5 0.16
21 7 0.22
22 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
ATAAAAATATATATAAATAA
Found at i:1044711 original size:2 final size:2
Alignment explanation
Indices: 1044704--1044739 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1044694 CCATTTAATC
1044704 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1044740 TATTTACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1046111 original size:2 final size:2
Alignment explanation
Indices: 1046104--1046130 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1046094 AACAATCATC
1046104 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1046131 GTATGTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1046317 original size:2 final size:2
Alignment explanation
Indices: 1046310--1046373 Score: 85
Period size: 2 Copynumber: 32.5 Consensus size: 2
1046300 ATTTACGTAC
* * * *
1046310 AT AT AT AT AT AT AT AT AT A- AT AT TT AC AT AC AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1046351 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
1046374 GATACACGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:1047810 original size:6 final size:6
Alignment explanation
Indices: 1047799--1047864 Score: 59
Period size: 6 Copynumber: 11.2 Consensus size: 6
1047789 AAAATATATA
* *
1047799 ATATTT ATATTT AAAATTT -TA-AT ATATTT AATAATTT ATA-TT ATA-TT
1 ATATTT ATATTT -ATATTT ATATTT ATATTT -AT-ATTT ATATTT ATATTT
1047846 ATATTT ATATTT ATATTT A
1 ATATTT ATATTT ATATTT A
1047865 ACGAAAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
4 1 0.02
5 13 0.26
6 23 0.46
7 9 0.18
8 4 0.08
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (6 bp):
ATATTT
Found at i:1047826 original size:17 final size:19
Alignment explanation
Indices: 1047804--1047865 Score: 62
Period size: 17 Copynumber: 3.5 Consensus size: 19
1047794 ATATAATATT
1047804 TATATTTAA-AATTT-TAA
1 TATATTTAATAATTTATAA
*
1047821 TATATTTAATAATTTATAT
1 TATATTTAATAATTTATAA
*
1047840 TATA-TT-AT-ATTTATATT
1 TATATTTAATAATTTATA-A
1047857 TATATTTAA
1 TATATTTAA
1047866 CGAAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
16 7 0.18
17 16 0.41
18 9 0.23
19 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTTAATAATTTATAA
Found at i:1052425 original size:22 final size:23
Alignment explanation
Indices: 1052397--1052452 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
1052387 TGGACATGTT
1052397 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
1052419 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
1052442 AAAAATGCATG
1 AAAAATGCATG
1052453 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:1053410 original size:20 final size:20
Alignment explanation
Indices: 1053363--1053437 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
1053353 AAAAAGACAT
*
1053363 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1053382 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1053403 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
1053423 AATGTATCGATACAT
1 AATGTATCGATACAT
1053438 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1053431 original size:40 final size:39
Alignment explanation
Indices: 1053360--1053437 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
1053350 GGTAAAAAGA
* *
1053360 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
1053399 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1053438 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1054014 original size:32 final size:32
Alignment explanation
Indices: 1053973--1055271 Score: 2213
Period size: 32 Copynumber: 40.6 Consensus size: 32
1053963 GATTTGAAAA
* ** **
1053973 GGGTTGCCACTGACTTGCATGGGCTTTTAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054005 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054037 GAGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* * *
1054069 GAGTTGCCACCGACTTGTGTGGGTTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054101 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054133 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
1054165 GGGTTGTCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054197 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054229 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054261 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054293 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054325 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054357 GAGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054389 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054421 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054453 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054485 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054517 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054549 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
1054581 GGGTTGCCACCGGCTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054613 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054645 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054677 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054709 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054741 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
1054773 GGGTTGCCACCAACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054805 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054837 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054869 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054901 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1054933 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054965 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1054997 GAGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1055029 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
1055061 AGGTTGCCACCG-CTTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGAC-TTGTGTGGGCTTTGGAAT
1055093 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1055125 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1055157 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* **
1055189 GAGTTGCCACCGACTTGTGTGGGCTTTTAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* * * * *
1055221 GGGTTGCCACCAACTTCTGGGGGCTTTGAAAA
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* * *
1055253 AGGTTGCCACGGAGTTGTG
1 GGGTTGCCACCGACTTGTG
1055272 GTCTTAAAAG
Statistics
Matches: 1214, Mismatches: 51, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
31 1 0.00
32 1212 1.00
33 1 0.00
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.31
Consensus pattern (32 bp):
GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
Found at i:1055288 original size:27 final size:27
Alignment explanation
Indices: 1055250--1055692 Score: 652
Period size: 27 Copynumber: 16.2 Consensus size: 27
1055240 GGGGCTTTGA
* *
1055250 AAAAGGTTGCCACGGAGTTGTGGTCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1055277 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
1055304 AAAAGGGATGCCATGGAGTTATGGACTT
1 AAAAGGG-TGCCACGGAGTTGTGGACTT
*
1055332 AAAAGAGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1055359 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1055386 AAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
** * *
1055413 AAAAGAATGCCACGAAGTTATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1055440 AAAAGGGTGCCACGGAGTTGTGGTCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1055467 AAACAGGGATGCCACGAAGTTGTGGACTT
1 AAA-AGGG-TGCCACGGAGTTGTGGACTT
1055496 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1055523 AAAAGGGTGCCACGGAGTTGTGGATTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
1055550 AAAAAGGTGCCACGGAGTTGTGGATTTT
1 AAAAGGGTGCCACGGAGTTGTGGA-CTT
*
1055578 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1055605 AAAAGGGTACCACGGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
*
1055633 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
1055660 AAAAGGATGCCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
1055688 AAAAG
1 AAAAG
1055693 AAAATGCCAC
Statistics
Matches: 378, Mismatches: 32, Indels: 11
0.90 0.08 0.03
Matches are distributed among these distances:
27 268 0.71
28 89 0.24
29 21 0.06
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:1055322 original size:55 final size:54
Alignment explanation
Indices: 1055250--1055692 Score: 652
Period size: 55 Copynumber: 8.1 Consensus size: 54
1055240 GGGGCTTTGA
* *
1055250 AAAAGGTTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
* * *
1055304 AAAAGGGATGCCATGGAGTTATGGACTTAAAAGAGTGCCACGGAGTTGTGGACTT
1 AAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
*
1055359 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
** * * *
1055413 AAAAGAATGCCACGAAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
*
1055467 AAACAGGGATGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
1 AAA-AGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
* * *
1055523 AAAAGGGTGCCACGGAGTTGTGGATTTAAAAAGGTGCCACGGAGTTGTGGATTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGA-CTT
* *
1055578 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTACCACGGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TT
* * *
1055633 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TT
1055688 AAAAG
1 AAAAG
1055693 AAAATGCCAC
Statistics
Matches: 353, Mismatches: 31, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
54 141 0.40
55 164 0.46
56 48 0.14
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (54 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:1055513 original size:137 final size:136
Alignment explanation
Indices: 1055249--1055716 Score: 638
Period size: 137 Copynumber: 3.4 Consensus size: 136
1055239 GGGGGCTTTG
* * **
1055249 AAAAAGGTTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGATG
1 AAAAAGGATGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTAAAAGGG-TG
* * *
1055314 CCATGGAGTTATGGACTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTG
65 CCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTG
1055379 TGGACTT
130 TGGACTT
* *
1055386 AAAAAGG-TGCCACGGAGTTGTGGACTTAAAAGAATGCCACGAAGTTATGGACTTAAAAGGGTGC
1 AAAAAGGATGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTAAAAGGGTGC
* *
1055450 CACGGAGTTGTGGTCTTAAACAGGGATGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTT
66 CACGGAGTTGTGGACTTAAA-AGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTT
1055515 GTGGACTT
129 GTGGACTT
* * * *
1055523 -AAAAGGGTGCCACGGAGTTGTGGATTTAAAA-AGGTGCCACGGAGTTGTGGATTTTAAAAGGGT
1 AAAAAGGATGCCACGGAGTTGTGGACTTAAAAGA-ATGCCACGGAGTTGTGGA-CTTAAAAGGGT
* * *
1055586 GCCACAGAGTTGTGGACTTAAAAGGGTACCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGT
64 GCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGT
1055651 TGTGGACTT
128 TGTGGACTT
* * *
1055660 -AAAAGGATGCCACAGAGTTGTGGACTTTAAAAGAAAATGCCACTGAGTCGTGGACTT
1 AAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAG--AATGCCACGGAGTTGTGGACTT
1055717 TGAAAAGGTC
Statistics
Matches: 294, Mismatches: 27, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
135 20 0.07
136 75 0.26
137 145 0.49
138 36 0.12
139 2 0.01
140 15 0.05
141 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.24
Consensus pattern (136 bp):
AAAAAGGATGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTAAAAGGGTGC
CACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGT
GGACTT
Done.