Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3053563
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 20
Found at i:1397007 original size:92 final size:92
Alignment explanation
Indices: 1396853--1397540 Score: 1097
Period size: 92 Copynumber: 7.4 Consensus size: 92
1396843 GACAAAGGCA
* * * * * *
1396853 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTAAAGGTGCCAATATGTTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
*
1396918 AGGCCAGCAATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
* *
1396945 CCACTGTGCTGATTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1397010 AGGCCAGCGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
*
1397037 CTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1397102 AGGCCAGCGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
*
1397129 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1397194 AGGCCAGCGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
* * *
1397221 CCAATATGCTGATTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTACCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1397286 AGGCCAGCGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
* *
1397313 CTATTGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
1397378 AGGCTAACGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
*
1397405 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
1397470 AGGCCAGCTACATTGGACTTAAAGATGAAGGTG
66 AGGCCAGCGATATTGGACTT----A--AAGGTG
* * * *
1397503 CCAATATGCTGATTCAAGGCCAACGACATTAGACTTAA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
1397541 GGAAATACCA
Statistics
Matches: 554, Mismatches: 36, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
92 513 0.93
96 1 0.00
98 40 0.07
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (92 bp):
CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGTG
Found at i:1397239 original size:21 final size:21
Alignment explanation
Indices: 1397174--1397239 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
1397164 TAAAGATAAC
1397174 GGTGCCAATATGCTGATTCAA
1 GGTGCCAATATGCTGATTCAA
*
1397195 -G-GCCAGCGATAT--TGGACTTAAA
1 GGTGCCA---ATATGCT-GA-TTCAA
1397217 GGTGCCAATATGCTGATTCAA
1 GGTGCCAATATGCTGATTCAA
1397238 GG
1 GG
1397240 CCAGCTACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 18
0.63 0.04 0.33
Matches are distributed among these distances:
19 4 0.12
20 2 0.06
21 12 0.35
22 10 0.29
23 2 0.06
24 4 0.12
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (21 bp):
GGTGCCAATATGCTGATTCAA
Found at i:1397260 original size:276 final size:276
Alignment explanation
Indices: 1396684--1397524 Score: 1180
Period size: 276 Copynumber: 3.0 Consensus size: 276
1396674 TTAGGAATGT
* * * *
1396684 TAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGG
1 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAG--G-----TG
* * * * *
1396749 CACCAATATGCTGATTCAAGGCCAG-TGATATTGGACTTAAAGATGAAGGTGCCAATATGTTGAT
58 --CTAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT
* * * * *
1396813 TTAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGCACCAATATGCTGATTCAAGGCCAGCG
120 TCAAGGCCAGCGATATTGGACTT-AAAG--G-----TG--CCAATGTGCTGATTCAAGGCCAGCT
* * * * *
1396878 ATATTGGACTTAATGGTAAAGGTGCCAATATGTTGATTCAAGGCCAGCAATATTGGACTTAAAGG
175 ACATTGGACTTAAAGATAACGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGG
* *
1396943 TGCCACTGTGCTGATTCAAGGCCAGCTACATTGGACA
240 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACA
1396980 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTG
1 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTG
1397045 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
66 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
1397110 GATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACG
131 GATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACG
*
1397175 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATATGCTGATTCAAGG
196 GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGGTGCCAATATGCTGATTCAAGG
1397240 CCAGCTACATTGGACA
261 CCAGCTACATTGGACA
* *
1397256 TAAAGATAAAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTATTGTG
1 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTG
* *
1397321 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAAC
66 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
1397386 GATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACG
131 GATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACG
* *
1397451 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
196 GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT----A--AAGGTGCCAATATGCTGAT
1397516 TCAAGGCCA
255 TCAAGGCCA
1397525 ACGACATTAG
Statistics
Matches: 510, Mismatches: 28, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
276 345 0.68
278 1 0.00
280 1 0.00
282 28 0.05
283 1 0.00
285 4 0.01
286 76 0.15
287 1 0.00
288 1 0.00
293 1 0.00
295 4 0.01
296 47 0.09
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (276 bp):
TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTG
CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
GATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAACG
GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGGTGCCAATATGCTGATTCAAGG
CCAGCTACATTGGACA
Found at i:1397616 original size:32 final size:32
Alignment explanation
Indices: 1397548--1397698 Score: 169
Period size: 32 Copynumber: 4.6 Consensus size: 32
1397538 TAAGGAAATA
* *
1397548 CCACCAACTTCTGTGGGCTTTTGAGAAGGGTTG
1 CCACCAACTTATGTGGGCTTTGGAG-AGGGTTG
* *
1397581 CCACCGACTTATGTGGGCTTTGGAGGGGGTTG
1 CCACCAACTTATGTGGGCTTTGGAGAGGGTTG
* * * *
1397613 CCACCAACTTGTGTGGGCTTTAGAAAAAAGGTTG
1 CCACCAACTTATGTGGGCTTT-G-GAGAGGGTTG
* *
1397647 CCACCGAA-TTGTGTGGGCTTTGGAGGGGGTTG
1 CCACC-AACTTATGTGGGCTTTGGAGAGGGTTG
1397679 CCACCAACTTATGTGGGCTT
1 CCACCAACTTATGTGGGCTT
1397699 AAAAGGGTGC
Statistics
Matches: 99, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
31 2 0.02
32 47 0.47
33 24 0.24
34 24 0.24
35 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.28
Consensus pattern (32 bp):
CCACCAACTTATGTGGGCTTTGGAGAGGGTTG
Found at i:1397665 original size:66 final size:65
Alignment explanation
Indices: 1397548--1397698 Score: 230
Period size: 66 Copynumber: 2.3 Consensus size: 65
1397538 TAAGGAAATA
* * * * *
1397548 CCACCAACTTCTGTGGGCTTTTGAGAAGGGTTGCCACCGACTTATGTGGGCTTTGGAGGGGGTTG
1 CCACCAACTTATGTGGGCTTTAGAAAAAGGTTGCCACCGAATTATGTGGGCTTTGGAGGGGGTTG
* *
1397613 CCACCAACTTGTGTGGGCTTTAGAAAAAAGGTTGCCACCGAATTGTGTGGGCTTTGGAGGGGGTT
1 CCACCAACTTATGTGGGCTTTAG-AAAAAGGTTGCCACCGAATTATGTGGGCTTTGGAGGGGGTT
1397678 G
65 G
1397679 CCACCAACTTATGTGGGCTT
1 CCACCAACTTATGTGGGCTT
1397699 AAAAGGGTGC
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
65 21 0.27
66 57 0.73
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.28
Consensus pattern (65 bp):
CCACCAACTTATGTGGGCTTTAGAAAAAGGTTGCCACCGAATTATGTGGGCTTTGGAGGGGGTTG
Found at i:1397744 original size:35 final size:33
Alignment explanation
Indices: 1397705--1398269 Score: 310
Period size: 34 Copynumber: 17.6 Consensus size: 33
1397695 GCTTAAAAGG
1397705 GTGCCACGGAGTTGTGGACTTAAAAGGGAAAAATA
1 GTGCCACGGAGTTGTGGACTTAAAA-GGAAAAA-A
*
1397740 GTGCCATGGAGTTGTGGACTTTAAAAGG------
1 GTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAA
1397768 GTGCCACGGAGTTGTGGACTTAGAAA-GAAAAAGA
1 GTGCCACGGAGTTGTGGACTTA-AAAGGAAAAA-A
* * * *
1397802 GTGCTACGGAGTTGTGGGCTTTAAAAAGAAAAAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAA
*
1397836 GTGCCACGGAGTTGTGGACTTAGAAGGAAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGG-AAAAAA
* * * *
1397870 GTGCCACGGAGTTATGGGCTTAAAAGGGAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* ** *
1397903 GTGCCACAGAGTTGTGGACTT-TGA-GAGAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* * ** **
1397934 -CGCCACTGAGTCATGGACTTTGAA-GAAAAGAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAA-AA
** * ** *
1397966 -TGCCATTGAGTCGTGGACTT-TGA-GACAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* * ** *
1397996 -TGCCACTGAGTCGTGGACTTTGAA-G-AAAAT
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* * ** *
1398026 GATGCCACTGAGTCGTGGACTTTGAA-GAAAAGA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* * *
1398059 -TGCCACTGAGTCGTGGACTTTAAAGG-AAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* * *
1398090 GATGCCACAGAGTTGTGGACTTAAAAGGAACAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
*
1398124 GTGCCACGGAGTTGTGGACTTTAAAGGAAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGG-AAAAAA
* *
1398158 GGTGCCACGGAGTCGTGGACTTGAAAGG------
1 -GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
* * *
1398186 GTGCCACGGAGTTGTGGGCTT-TAA--AAAGAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
** *
1398216 -TGCCACAAAGTTGTGGACTTTGAAAA-GAAAAAG
1 GTGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAAA
* *
1398249 GTGGCACGGAGTCGTGGACTT
1 GTGCCACGGAGTTGTGGACTT
1398270 TGAAGAAAAG
Statistics
Matches: 426, Mismatches: 69, Indels: 72
0.75 0.12 0.13
Matches are distributed among these distances:
26 2 0.00
27 23 0.05
28 21 0.05
29 15 0.04
30 42 0.10
31 43 0.10
32 48 0.11
33 84 0.20
34 88 0.21
35 54 0.13
36 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.21
Consensus pattern (33 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAA
Found at i:1397873 original size:68 final size:64
Alignment explanation
Indices: 1397699--1398302 Score: 357
Period size: 62 Copynumber: 9.4 Consensus size: 64
1397689 ATGTGGGCTT
* * * *
1397699 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAATAGTGCCATGGAGTTGTGGACTTTAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAA--GAAAAA-A-TGCCACGGAGTCGTGGACTTTAA
1397764 AAG
62 AAG
* * *
1397767 -----GGTGCCACGGAGTTGTGGACTTAGAAAGAAAAAGAGTGCTACGGAGTTGTGGGCTTTAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAG-AAGAAAAA-A-TGCCACGGAGTCGTGGACTTT-AA
1397827 AAG
62 AAG
** *
1397830 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAAAGTGCCACGGAGTTATGGGC-TTAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAA-G-AAAAAA-TGCCACGGAGTCGTGGACTTTAAA
1397894 AGG
63 A-G
* * * * * * * *
1397897 GAAAAGGTGCCACAGAGTTGTGGACTTTG-AGAGAAAACGCCACTGAGTCATGGACTTT-GAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGAAAAAATGCCACGGAGTCGTGGACTTTAAAAG
* ** * * * * *
1397959 -AAAAGAATGCCATTGAGTCGTGGACTTTG-AGACAAAATGCCACTGAGTCGTGGACTTT-GAAG
1 AAAAAG-GTGCCACGGAGTTGTGGACTTAGAAGAAAAAATGCCACGGAGTCGTGGACTTTAAAAG
* * * * * * * *
1398021 AAAATGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGAAAAAATGCCACGGAGTCGTGGACTTTAAAAG
* * * ** *
1398085 AAAAAGATGCCACAGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAA-GAA-AAAATGCCACGGAGTCGTGGACTTTAAA-
*
1398150 GAA
63 -AG
* *** * *
1398153 AAAAAGGTGCCACGGAGTCGTGGACTT----GAAAGGGTGCCACGGAGTTGTGGGCTTT-AAA-
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGAAAAAATGCCACGGAGTCGTGGACTTTAAAAG
* ** * * * *
1398211 AAGAA--TGCCACAAAGTTGTGGACTTTGAAAAGAAAAAGGTGGCACGGAGTCGTGGACTTT-GA
1 AAAAAGGTGCCACGGAGTTGTGGAC-TT-AGAAGAAAAA-ATGCCACGGAGTCGTGGACTTTAAA
1398273 AG
63 AG
* * **
1398275 AAAAGAGATGCCACTGAGTCATGGACTT
1 AAAA-AGGTGCCACGGAGTTGTGGACTT
1398303 TGAAAAAGTA
Statistics
Matches: 447, Mismatches: 59, Indels: 62
0.79 0.10 0.11
Matches are distributed among these distances:
56 15 0.03
57 2 0.00
58 4 0.01
59 1 0.00
61 7 0.02
62 125 0.28
63 99 0.22
64 40 0.09
65 5 0.01
66 32 0.07
67 45 0.10
68 67 0.15
69 5 0.01
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (64 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGAAAAAATGCCACGGAGTCGTGGACTTTAAAAG
Found at i:1398095 original size:33 final size:32
Alignment explanation
Indices: 1397706--1398303 Score: 379
Period size: 33 Copynumber: 18.7 Consensus size: 32
1397696 CTTAAAAGGG
* *
1397706 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAATA
1 TGCCACGGAGTTGTGGACTTTAAA--GAAAAAGA
* * *
1397740 GTGCCATGGAGTTGTGGACTTT----AAAAGGG
1 -TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
*
1397769 TGCCACGGAGTTGTGGACTTAGAAAGAAAAAGA
1 TGCCACGGAGTTGTGGACTT-TAAAGAAAAAGA
* * *
1397802 GTGCTACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
1 -TGCCACGGAGTTGTGGACTTT--AAAGAAAAAGA
*
1397837 TGCCACGGAGTTGTGGAC-TTAGAAGGAAAAAAA
1 TGCCACGGAGTTGTGGACTTTA-AA-GAAAAAGA
* * * * *
1397870 GTGCCACGGAGTTATGGGCTTAAAAGGGAAAAGG
1 -TGCCACGGAGTTGTGGACTTTAAA-GAAAAAGA
* * *
1397904 TGCCACAGAGTTGTGGACTTT-GAGAGAAA-A
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
* * ** *
1397934 CGCCACTGAGTCATGGACTTTGAAG-AAAAGAA
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAG-A
** * * *
1397966 TGCCATTGAGTCGTGGACTTT-GAGACAAA-A
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
* * * *
1397996 TGCCACTGAGTCGTGGACTTTGAAGAAAATGA
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
* * *
1398028 TGCCACTGAGTCGTGGACTTTGAAG-AAAAGA
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
* *
1398059 TGCCACTGAGTCGTGGACTTTAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTTAAA-GAAAAAGA
* * * *
1398092 TGCCACAGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTTAAA-GAAAAAGA
*
1398125 TGCCACGGAGTTGTGGACTTTAAAGGAAAAAAAGG
1 TGCCACGGAGTTGTGGACTTTAAA-G--AAAAAGA
* * *
1398160 TGCCACGGAGTCGTGGAC-TT---G-AAAGGG
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
* *
1398187 TGCCACGGAGTTGTGGGCTTT-AA-AAAGA-A
1 TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
** *
1398216 TGCCACAAAGTTGTGGACTTTGAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGACTTT--AAAGAAAAAGA
* * *
1398250 TGGCACGGAGTCGTGGACTTTGAAGAAAAGAGA
1 TGCCACGGAGTTGTGGACTTTAAAGAAAA-AGA
* **
1398283 TGCCACTGAGTCATGGACTTT
1 TGCCACGGAGTTGTGGACTTT
1398304 GAAAAAGTAT
Statistics
Matches: 454, Mismatches: 77, Indels: 66
0.76 0.13 0.11
Matches are distributed among these distances:
27 21 0.05
28 21 0.05
29 22 0.05
30 44 0.10
31 42 0.09
32 61 0.13
33 112 0.25
34 77 0.17
35 54 0.12
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.22
Consensus pattern (32 bp):
TGCCACGGAGTTGTGGACTTTAAAGAAAAAGA
Found at i:1398144 original size:191 final size:186
Alignment explanation
Indices: 1397831--1398302 Score: 427
Period size: 191 Copynumber: 2.5 Consensus size: 186
1397821 TTTAAAAAGA
* * * * ** * *
1397831 AAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAAAGTGCCACGGAGTTATGGGCTTAAAAG
1 AAAAGATGCCACAGAGTTGTGGACTTTGAA-GAAAAAGA-TGCCACGGAGTCGTGGACTTTAAAG
* * ** * *
1397896 GGAAAAGGTGCCACAGAGTTGTGGACTTTGAGAGAAAACGCCACTGAGTCATGGACTTTGAA-GA
64 GAAAAAGATGCCACAGAGTTGTGGACTTAAAGAGAAAACGCCACGGAGTCATGGACTTTAAAGGA
* ** *
1397960 AAAGAA-TGCCATTGAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGACTTTGAAG
129 AAAAAAGTGCCACGGAGTCGTGGAC-TTGA-A-AAAATGCCACGGAGTCGTGGACTTT-AAG
* * *
1398021 AAAATGATGCCACTGAGTCGTGGACTTTGAAG-AAAAGATGCCACTGAGTCGTGGACTTTAAAGG
1 AAAA-GATGCCACAGAGTTGTGGACTTTGAAGAAAAAGATGCCACGGAGTCGTGGACTTTAAAGG
* **
1398085 AAAAAGATGCCACAGAGTTGTGGACTTAAA-AGGAACAAGGTGCCACGGAGTTGTGGACTTTAAA
65 AAAAAGATGCCACAGAGTTGTGGACTTAAAGA-GAA-AA--CGCCACGGAGTCATGGACTTTAAA
*** * *
1398149 GGAAAAAAAGGTGCCACGGAGTCGTGGACTTGAAAGGGTGCCACGGAGTTGTGGGCTTT-A-
126 GGAAAAAAA-GTGCCACGGAGTCGTGGACTTGAAAAAATGCCACGGAGTCGTGGACTTTAAG
* * * *
1398209 AAAAGAATGCCACAAAGTTGTGGACTTTGAAAAGAAAAAGGTGGCACGGAGTCGTGGACTTTGAA
1 AAAAG-ATGCCACAGAGTTGTGGACTTTG--AAGAAAAAGATGCCACGGAGTCGTGGACTTTAAA
* **
1398274 -GAAAAGAGATGCCACTGAGTCATGGACTT
63 GGAAAA-AGATGCCACAGAGTTGTGGACTT
1398303 TGAAAAAGTA
Statistics
Matches: 231, Mismatches: 38, Indels: 25
0.79 0.13 0.09
Matches are distributed among these distances:
187 2 0.01
188 74 0.32
189 8 0.03
190 13 0.06
191 106 0.46
192 8 0.03
193 4 0.02
194 16 0.07
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (186 bp):
AAAAGATGCCACAGAGTTGTGGACTTTGAAGAAAAAGATGCCACGGAGTCGTGGACTTTAAAGGA
AAAAGATGCCACAGAGTTGTGGACTTAAAGAGAAAACGCCACGGAGTCATGGACTTTAAAGGAAA
AAAAGTGCCACGGAGTCGTGGACTTGAAAAAATGCCACGGAGTCGTGGACTTTAAG
Found at i:1398234 original size:124 final size:123
Alignment explanation
Indices: 1397996--1398307 Score: 317
Period size: 125 Copynumber: 2.5 Consensus size: 123
1397986 TGAGACAAAA
* * * * * * *
1397996 TGCCACTGAGTCGTGGACTTTGAAG-AAAATGATGCCACTGAGTCGTGGACTTTGAAGAAAAGAT
1 TGCCACGGAGTCGTGGACTTTAAAGAAAAAAGATGCCACGGAGTCATGGACTTT---GAAAGGGT
* * * * *
1398060 GCCACTGAGTCGTGGACTTTAAAGGAAAAAGATGCCACAGAGTTGTGGAC-TT-AAAAGGAACAA
63 GCCACGGAGTTGTGGGCTTT-----AAAAAGATGCCACAAAGTTGTGGACTTTGAAAA-GAAAAA
1398123 GG
122 GG
* * *
1398125 TGCCACGGAGTTGTGGACTTTAAAGGAAAAAAAGGTGCCACGGAGTCGTGGAC-TTGAAAGGGTG
1 TGCCACGGAGTCGTGGACTTTAAA-G-AAAAAAGATGCCACGGAGTCATGGACTTTGAAAGGGTG
1398189 CCACGGAGTTGTGGGCTTTAAAAAGAATGCCACAAAGTTGTGGACTTTGAAAAGAAAAAGG
64 CCACGGAGTTGTGGGCTTTAAAAAG-ATGCCACAAAGTTGTGGACTTTGAAAAGAAAAAGG
* * * *
1398250 TGGCACGGAGTCGTGGACTTTGAAGAAAAGAGATGCCACTGAGTCATGGACTTTGAAA
1 TGCCACGGAGTCGTGGACTTTAAAGAAAAAAGATGCCACGGAGTCATGGACTTTGAAA
1398308 AAGTATTTGA
Statistics
Matches: 156, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
123 28 0.18
124 25 0.16
125 30 0.19
126 4 0.03
128 23 0.15
129 21 0.13
130 1 0.01
131 2 0.01
132 22 0.14
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.21
Consensus pattern (123 bp):
TGCCACGGAGTCGTGGACTTTAAAGAAAAAAGATGCCACGGAGTCATGGACTTTGAAAGGGTGCC
ACGGAGTTGTGGGCTTTAAAAAGATGCCACAAAGTTGTGGACTTTGAAAAGAAAAAGG
Found at i:1398431 original size:8 final size:8
Alignment explanation
Indices: 1398408--1398453 Score: 65
Period size: 8 Copynumber: 5.6 Consensus size: 8
1398398 GATGCAAATA
*
1398408 ATGATGTT
1 ATGATGTC
*
1398416 ATTGATGTT
1 A-TGATGTC
1398425 ATGATGTC
1 ATGATGTC
1398433 ATGATGTC
1 ATGATGTC
1398441 ATGATGTC
1 ATGATGTC
1398449 ATGAT
1 ATGAT
1398454 TACAACACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
8 28 0.78
9 8 0.22
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (8 bp):
ATGATGTC
Found at i:1399540 original size:12 final size:12
Alignment explanation
Indices: 1399514--1399560 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
1399504 GCCTTTACAC
*
1399514 TTTTTTGTGTGTG
1 TTTTTTGT-TTTG
1399527 TTTTTTGTTTTG
1 TTTTTTGTTTTG
1399539 TTTTTTGTTTT-
1 TTTTTTGTTTTG
1399550 TTTTTGTGTTT
1 TTTTT-TGTTT
1399561 ACTTTTGACT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
11 5 0.16
12 19 0.59
13 8 0.25
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (12 bp):
TTTTTTGTTTTG
Found at i:1400358 original size:13 final size:13
Alignment explanation
Indices: 1400340--1400364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1400330 CAAAGATCAG
1400340 TGTATCGATACAA
1 TGTATCGATACAA
1400353 TGTATCGATACA
1 TGTATCGATACA
1400365 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1400427 original size:13 final size:13
Alignment explanation
Indices: 1400409--1400492 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
1400399 AGCTTCGTAG
1400409 CGATACATTGTAT
1 CGATACATTGTAT
1400422 CGATACAAAGCTTATGTAT
1 CGATAC--A--TT--GTAT
1400441 CGATACATTGTAT
1 CGATACATTGTAT
1400454 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
1400473 CGATACATTGTAT
1 CGATACATTGTAT
1400486 CGATACA
1 CGATACA
1400493 ACACTTTATG
Statistics
Matches: 59, Mismatches: 0, Indels: 24
0.71 0.00 0.29
Matches are distributed among these distances:
13 26 0.44
14 1 0.02
15 3 0.05
16 6 0.10
17 3 0.05
18 1 0.02
19 19 0.32
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1400441 original size:19 final size:18
Alignment explanation
Indices: 1400417--1400514 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
1400407 AGCGATACAT
1400417 TGTATCGATACAAAGCTTA
1 TGTATCGATACAAA-CTTA
1400436 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1400449 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
1400468 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1400481 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
1400501 TGTATCGATACAAA
1 TGTATCGATACAAA
1400515 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 3 0.05
17 1 0.02
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1400447 original size:32 final size:32
Alignment explanation
Indices: 1400409--1400512 Score: 183
Period size: 32 Copynumber: 3.2 Consensus size: 32
1400399 AGCTTCGTAG
1400409 CGATACATTGTATCGATACAA-AGCTTATGTAT
1 CGATACATTGTATCGATACAACA-CTTATGTAT
1400441 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
1400473 CGATACATTGTATCGATACAACACTTTATGTAT
1 CGATACATTGTATCGATACAACAC-TTATGTAT
1400506 CGATACA
1 CGATACA
1400513 AATCGTTGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
32 54 0.77
33 16 0.23
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:1401941 original size:13 final size:11
Alignment explanation
Indices: 1401924--1401975 Score: 50
Period size: 13 Copynumber: 4.3 Consensus size: 11
1401914 ACTAAAGAAG
1401924 AAAAAAAGAGTA
1 AAAAAAAGAG-A
1401936 AGAAAAAAGAGA
1 A-AAAAAAGAGA
*
1401948 AAAAAAAGATA
1 AAAAAAAGAGA
1401959 AAATAGAAAGAGGA
1 AAA-A-AAAGA-GA
1401973 AAA
1 AAA
1401976 GGGAGTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 12 0.35
12 4 0.12
13 14 0.41
14 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (11 bp):
AAAAAAAGAGA
Found at i:1401975 original size:24 final size:24
Alignment explanation
Indices: 1401917--1401975 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
1401907 AGAAAAAACT
*
1401917 AAAGAAGAAAAAAAGAGTAAGAAA
1 AAAGAGGAAAAAAAGAGTAAGAAA
*
1401941 AAAGAGAAAAAAAAGA-TAA-AATA
1 AAAGAGGAAAAAAAGAGTAAGAA-A
1401964 GAAAGAGGAAAA
1 -AAAGAGGAAAA
1401976 GGGAGTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 2 0.07
23 4 0.13
24 24 0.80
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (24 bp):
AAAGAGGAAAAAAAGAGTAAGAAA
Found at i:1403439 original size:13 final size:13
Alignment explanation
Indices: 1403421--1403451 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
1403411 ACAATTCATC
1403421 ATGTATCGATACA
1 ATGTATCGATACA
1403434 ATGTATCGATACA
1 ATGTATCGATACA
1403447 ATGTA
1 ATGTA
1403452 CCATGTATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1403540 original size:19 final size:20
Alignment explanation
Indices: 1403497--1403549 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
1403487 TGCTAGTTTT
**
1403497 ATGTATCGATACAATTGTCC
1 ATGTATCGATACAATTGAAC
1403517 ATGTATCGATACAA-TGAAC
1 ATGTATCGATACAATTGAAC
1403536 ATGTATCGATACAA
1 ATGTATCGATACAA
1403550 AGCATAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATTGAAC
Found at i:1412193 original size:20 final size:20
Alignment explanation
Indices: 1412168--1412221 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1412158 ATTACAAGCA
*
1412168 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
1412188 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
*
1412208 ATGTATCAATACAA
1 ATGTATCGATACAA
1412222 ATAGTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1412844 original size:13 final size:13
Alignment explanation
Indices: 1412826--1412855 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1412816 TGGCCATTGA
1412826 AGTTATTTTTATG
1 AGTTATTTTTATG
1412839 AGTTATTTTTATG
1 AGTTATTTTTATG
1412852 AGTT
1 AGTT
1412856 TGGGGACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (13 bp):
AGTTATTTTTATG
Found at i:1420948 original size:15 final size:15
Alignment explanation
Indices: 1420928--1420956 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1420918 TCTAGCTATA
1420928 AGTTTTCTCAATTTC
1 AGTTTTCTCAATTTC
1420943 AGTTTTCTCAATTT
1 AGTTTTCTCAATTT
1420957 TAAAAAAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (15 bp):
AGTTTTCTCAATTTC
Found at i:1423835 original size:25 final size:24
Alignment explanation
Indices: 1423785--1423846 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
1423775 GGCTTGACCT
*
1423785 TAAATTAAATAATATATGACTCAA
1 TAAATTAAATAAAATATGACTCAA
*
1423809 TATAATTAAATAAAATA-GGCTCAAA
1 TA-AATTAAATAAAATATGACTC-AA
*
1423834 TAAATTAATTAAA
1 TAAATTAAATAAA
1423847 TAAGCACATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 16 0.48
25 17 0.52
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.32
Consensus pattern (24 bp):
TAAATTAAATAAAATATGACTCAA
Found at i:1423868 original size:114 final size:115
Alignment explanation
Indices: 1423686--1423911 Score: 321
Period size: 114 Copynumber: 2.0 Consensus size: 115
1423676 ATTTAATAAT
* **
1423686 TGACACAACATAATTAAATAAAATATGCTCTAAATAAATTAATTAAATAAGCATGTGAGTCTTAT
1 TGACACAACATAATTAAATAAAATAGGCTCTAAATAAATTAATTAAATAAGCACATGAGTCTTAT
* * *
1423751 TTTATCTAATGTATATTTTTATAAGGCTTGACCTTAAATTAAATAATATA
66 TTTATCTAATATATATTTTTACAAGACTTGACCTTAAATTAAATAATATA
* * * *
1423801 TGACTCAATATAATTAAATAAAATAGGCTC-AAATAAATTAATTAAATAAGCACAT-ATTTTTAT
1 TGACACAACATAATTAAATAAAATAGGCTCTAAATAAATTAATTAAATAAGCACATGAGTCTTA-
* *
1423864 TTTTATCTAATATATATTTTTACAAGATTTGGCCTTAAATTAAATAAT
65 TTTTATCTAATATATATTTTTACAAGACTTGACCTTAAATTAAATAAT
1423912 TTACAACATT
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
113 5 0.05
114 66 0.67
115 27 0.28
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (115 bp):
TGACACAACATAATTAAATAAAATAGGCTCTAAATAAATTAATTAAATAAGCACATGAGTCTTAT
TTTATCTAATATATATTTTTACAAGACTTGACCTTAAATTAAATAATATA
Found at i:1426715 original size:18 final size:18
Alignment explanation
Indices: 1426692--1426726 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1426682 ATAATTGTTA
1426692 TTTTATATTTTT-TTATTT
1 TTTTAT-TTTTTATTATTT
1426710 TTTTATTTTTTATTATT
1 TTTTATTTTTTATTATT
1426727 AATATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTATTTTTTATTATTT
Found at i:1428149 original size:17 final size:18
Alignment explanation
Indices: 1428127--1428164 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
1428117 TAAAAAAGTT
1428127 AAAATAATTTAAATTT-A
1 AAAATAATTTAAATTTGA
*
1428144 AAAATAATTTGAATTTGA
1 AAAATAATTTAAATTTGA
1428162 AAA
1 AAA
1428165 GTTTAAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
AAAATAATTTAAATTTGA
Found at i:1428657 original size:22 final size:19
Alignment explanation
Indices: 1428608--1428657 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 19
1428598 TAGTTGTTCA
1428608 AAATTAA-AATAATCTTTT
1 AAATTAATAATAATCTTTT
1428626 AAATGT-ATAATAATCTCTTAAT
1 AAAT-TAATAATAATCT-TT--T
1428648 AAATTAATAA
1 AAATTAATAA
1428658 AATTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 2 0.08
21 1 0.04
22 9 0.35
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (19 bp):
AAATTAATAATAATCTTTT
Found at i:1429416 original size:37 final size:36
Alignment explanation
Indices: 1429375--1429444 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 36
1429365 ACGTAAATTT
**
1429375 AAATAACAAGAGTATTAAACCTAAATGACCTGAACTC
1 AAATAACAAGAGTACCAAA-CTAAATGACCTGAACTC
** *
1429412 AAATAACCTGAGTACCAAACTAAATGACTTGAA
1 AAATAACAAGAGTACCAAACTAAATGACCTGAA
1429445 ACAAAATGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
36 13 0.46
37 15 0.54
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (36 bp):
AAATAACAAGAGTACCAAACTAAATGACCTGAACTC
Found at i:1431058 original size:15 final size:15
Alignment explanation
Indices: 1431038--1431078 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
1431028 GTTTATCGAT
1431038 TTCATTTGGAGCTTC
1 TTCATTTGGAGCTTC
*
1431053 TTCATTTTGAGCTTC
1 TTCATTTGGAGCTTC
*
1431068 CTCAATTTGGA
1 TTC-ATTTGGA
1431079 CATTTTTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (15 bp):
TTCATTTGGAGCTTC
Found at i:1435126 original size:13 final size:13
Alignment explanation
Indices: 1435108--1435133 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1435098 CAATTTTTTG
1435108 TGTATCGATACAT
1 TGTATCGATACAT
1435121 TGTATCGATACAT
1 TGTATCGATACAT
1435134 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1435130 original size:33 final size:33
Alignment explanation
Indices: 1435088--1435152 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1435078 TACAAGCCAA
* *
1435088 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
1435121 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
1435153 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:1442810 original size:24 final size:24
Alignment explanation
Indices: 1442768--1442814 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
1442758 AAGGGCACTC
*
1442768 TTTTTTTTATTGATGTTCATTCTT
1 TTTTTTTTATTGATATTCATTCTT
* *
1442792 TTTTTTTTCTTGCTATTCATTCT
1 TTTTTTTTATTGATATTCATTCT
1442815 CATTATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.13, G:0.06, T:0.70
Consensus pattern (24 bp):
TTTTTTTTATTGATATTCATTCTT
Found at i:1444824 original size:28 final size:29
Alignment explanation
Indices: 1444764--1444845 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 29
1444754 TTTTGGAGAT
1444764 AATAACGGGGTTGGAGTATCCCC--TCGA
1 AATAACGGGGTTGGAGTATCCCCGATCGA
1444791 AGATAACGGGGTTGGAGTATCCCCGAT-GA
1 A-ATAACGGGGTTGGAGTATCCCCGATCGA
* * * *
1444820 AATAATGAGGTTAGAGTATCCTCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
1444846 TGTGAAAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 43 0.90
29 3 0.06
30 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (29 bp):
AATAACGGGGTTGGAGTATCCCCGATCGA
Found at i:1444892 original size:52 final size:52
Alignment explanation
Indices: 1444828--1445061 Score: 204
Period size: 51 Copynumber: 4.5 Consensus size: 52
1444818 GAAATAATGA
* * * *
1444828 GGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* * * *
1444880 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGA-AAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* * *** *
1444932 GGTTAGAGTATCCCCGATTATGGAAAATTAAAG-TGTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* * *** * * * * *
1444983 GGTTGGAGTATCCTCGATTATGAGAAATCAAT-ATTTTGGAAACAAAGCCGA
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTAGAAATAAAACCGG
* *
1445034 GGTTTGAGTATCCCCGATTATGAGAAAT
1 GGTTGGAGTATCCCCGATTATGAAAAAT
1445062 CAATATTTTG
Statistics
Matches: 150, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
50 3 0.02
51 87 0.58
52 44 0.29
53 16 0.11
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (52 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTAGAAATAAAACCGG
Found at i:1445064 original size:51 final size:51
Alignment explanation
Indices: 1444862--1445097 Score: 221
Period size: 51 Copynumber: 4.6 Consensus size: 51
1444852 AAATTGGTGT
* * * *** *
1444862 TTTTAGAAATAAAATCG-GAGTTGGAGTATCCCCGATTA-AAGGAAAATTGGTG
1 TTTTGGAAATAAAACCGAG-GTTGGAGTATCCCCGATTATGA-G-AAATCAATA
* * * *
1444914 TTTTGAAAATAAAACCGGGGTTAGAGTATCCCCGATTATG-GAAAATTAA-A
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCGATTATGAG-AAATCAATA
* * * *
1444964 GTGTTAGAAATAAAACCGGGGTTGGAGTATCCTCGATTATGAGAAATCAATA
1 -TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCGATTATGAGAAATCAATA
* * *
1445016 TTTTGGAAACAAAGCCGAGGTTTGAGTATCCCCGATTATGAGAAATCAATA
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCGATTATGAGAAATCAATA
*
1445067 TTTTGGAAATAAAGCCGAGGTTGGA-TATCCC
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCC
1445098 TTCGGAAATA
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
50 6 0.04
51 115 0.74
52 34 0.22
53 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (51 bp):
TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCGATTATGAGAAATCAATA
Found at i:1445181 original size:78 final size:78
Alignment explanation
Indices: 1445034--1445207 Score: 260
Period size: 78 Copynumber: 2.2 Consensus size: 78
1445024 ACAAAGCCGA
* * ** * *
1445034 GGTTTGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGCCGAGGTTGGATATCCCT
1 GGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAAAATAAAGCAGAGGTTAGATATCCCT
*
1445099 TCGGAAATAACGG
66 TCGGAAATAACAG
*
1445112 GGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAAAATAAAGCAGGGGTTAGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAAAATAAAGCAGAGGTTAGA-TATCCC
1445177 -TCGGAAATAACAG
65 TTCGGAAATAACAG
1445190 GGTTGGAGTATCCCCGAT
1 GGTTGGAGTATCCCCGAT
1445208 GATTAACGGG
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 81 0.93
79 6 0.07
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (78 bp):
GGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAAAATAAAGCAGAGGTTAGATATCCCT
TCGGAAATAACAG
Found at i:1445280 original size:53 final size:51
Alignment explanation
Indices: 1445218--1445340 Score: 149
Period size: 51 Copynumber: 2.4 Consensus size: 51
1445208 GATTAACGGG
* * **
1445218 GTTGGAGTATTCCCGATTGT-GAAAAATTGGTGTTTTTTGGGAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAG-AAAATTAGTG--TTTTGAAAATAAAATCGGA
*
1445271 GTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAGAAAATTAGTGTTTTGAAAATAAAATCGGA
* *
1445322 GTGGGAATATCCCCGATTG
1 GTTGGAGTATCCCCGATTG
1445341 CGGAGAATTG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
51 33 0.54
53 27 0.44
54 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.33
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTAGAAAATTAGTGTTTTGAAAATAAAATCGGA
Found at i:1447721 original size:13 final size:13
Alignment explanation
Indices: 1447703--1447728 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1447693 CAAAGAATAG
1447703 ATGTATCGATACA
1 ATGTATCGATACA
1447716 ATGTATCGATACA
1 ATGTATCGATACA
1447729 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1447721 original size:34 final size:33
Alignment explanation
Indices: 1447682--1447748 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
1447672 AACTTCCTAG
*
1447682 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
1447716 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
1447749 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:1447790 original size:13 final size:13
Alignment explanation
Indices: 1447772--1447823 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
1447762 AGCTTCCTAG
1447772 CGATACATTGTAT
1 CGATACATTGTAT
1447785 CGATACAAAACTTGTGTAT
1 CGATAC---A-TT--GTAT
1447804 CGATACATTGTAT
1 CGATACATTGTAT
1447817 CGATACA
1 CGATACA
1447824 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1447804 original size:19 final size:17
Alignment explanation
Indices: 1447779--1447842 Score: 64
Period size: 19 Copynumber: 3.8 Consensus size: 17
1447769 TAGCGATACA
1447779 TTGTATCGATACAAAACT
1 TTGTATCGATAC-AAACT
1447797 TGTGTATCGATAC--A--
1 T-TGTATCGATACAAACT
1447811 TTGTATCGATACAACACT
1 TTGTATCGATACAA-ACT
1447829 TATGTATCGATACA
1 T-TGTATCGATACA
1447843 TTTACTGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 2 0.05
19 23 0.59
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (17 bp):
TTGTATCGATACAAACT
Found at i:1447813 original size:32 final size:32
Alignment explanation
Indices: 1447772--1447844 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
1447762 AGCTTCCTAG
*
1447772 CGATACATTGTATCGATACAAAACTTGTGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
1447804 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
1447836 CGATACATT
1 CGATACATT
1447845 TACTGAATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:1448741 original size:55 final size:55
Alignment explanation
Indices: 1448654--1449094 Score: 577
Period size: 55 Copynumber: 7.8 Consensus size: 55
1448644 TATCCTACTG
* * * *
1448654 TTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTT
1 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
1448709 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTC
1 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
* *
1448764 TTTGAGGACTGAAAGATGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTC
1 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCCTGCTC
* *
1448819 TTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTC
1 TTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
1448874 TTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTC
1 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
1448929 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCCTGCTC
1 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTC
* *
1448990 TTT-AGGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTC
1 TTTGA-GGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCGTCCTGCTC
*
1449051 TTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1449095 AAAAGGCATC
Statistics
Matches: 351, Mismatches: 16, Indels: 39
0.86 0.04 0.10
Matches are distributed among these distances:
54 7 0.02
55 231 0.66
56 12 0.03
59 6 0.02
60 26 0.07
61 64 0.18
62 5 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (55 bp):
TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
Found at i:1448853 original size:165 final size:167
Alignment explanation
Indices: 1448645--1449094 Score: 649
Period size: 165 Copynumber: 2.7 Consensus size: 167
1448635 AATAAAGTGT
* * * *
1448645 ATCCTACTGTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTT
1 ATCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
1448709 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT
65 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
*
1448774 GAAAGATGCCACCAACTTGTGTGGGCTTT-AAG-AGGT
130 GAAAGATGCCACCAACTTGTGTGGGCTTTAAAGAAGGC
* *
1448810 GTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
*
1448875 TTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
*
1448940 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGC
131 AAAGATGCCACCAACTTGTGTGGGCTTT--AAAG--AAGGC
*
1448981 ATCCTGCTCTTT-AGGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATC
1 ATCCTGCTCTTTGA-GGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCGTC
*
1449045 CTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
59 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1449095 AAAAGGCATC
Statistics
Matches: 256, Mismatches: 15, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
165 144 0.56
166 4 0.02
168 3 0.01
170 1 0.00
171 49 0.19
172 4 0.02
176 31 0.12
177 20 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (167 bp):
ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
AAAGATGCCACCAACTTGTGTGGGCTTTAAAGAAGGC
Found at i:1448886 original size:26 final size:26
Alignment explanation
Indices: 1448857--1448944 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
1448847 GTGTGGGCTT
1448857 TGAAAGGCGTCCTACTCTTTGAGGAC
1 TGAAAGGCGTCCTACTCTTTGAGGAC
** * *
1448883 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAA-G-GCGTCCTACTC-TTTGAGGAC
*
1448910 TTTGAAAGGCGTCCTGCTCTTTGAGGAC
1 --TGAAAGGCGTCCTACTCTTTGAGGAC
1448938 TGAAAGG
1 TGAAAGG
1448945 TGCCACCAAC
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
26 15 0.33
27 11 0.24
28 12 0.26
29 8 0.17
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.25
Consensus pattern (26 bp):
TGAAAGGCGTCCTACTCTTTGAGGAC
Found at i:1450129 original size:13 final size:12
Alignment explanation
Indices: 1450099--1450128 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1450089 TTCTTTTTTC
1450099 TTTTTTCTTCGT
1 TTTTTTCTTCGT
*
1450111 TTTTTTGTTCGT
1 TTTTTTCTTCGT
1450123 TTTTTT
1 TTTTTT
1450129 TTATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.80
Consensus pattern (12 bp):
TTTTTTCTTCGT
Found at i:1462625 original size:28 final size:29
Alignment explanation
Indices: 1462565--1462646 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 29
1462555 TTTTGGAGAT
1462565 AATAACGGGGTTGGAGTATCCCC--TCGA
1 AATAACGGGGTTGGAGTATCCCCGATCGA
1462592 AGATAACGGGGTTGGAGTATCCCCGAT-GA
1 A-ATAACGGGGTTGGAGTATCCCCGATCGA
* * * *
1462621 AATAATGAGGTTAGAGTATCCTCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
1462647 TGTGAAAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 43 0.90
29 3 0.06
30 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (29 bp):
AATAACGGGGTTGGAGTATCCCCGATCGA
Found at i:1462779 original size:51 final size:51
Alignment explanation
Indices: 1462629--1462899 Score: 287
Period size: 51 Copynumber: 5.3 Consensus size: 51
1462619 GAAATAATGA
* * * * ** *
1462629 GGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGGAAAATTAATG-TTTTAGAAATAAAACCGG
* * **
1462681 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGGAAAATTAATGTTTTAG-AAATAAAACCGG
*
1462733 GGTTAGAGTATCCCCGATTATGGAAAATTAATGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGGAAAATTAATGTTTTAGAAATAAAACCGG
* * * *
1462784 GGTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGGA-AAATTAATGTTTTAGAAATAAAACCGG
* * * *
1462835 GGTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGGA-AAATTAATGTTTTAGAAATAAAACCGG
*
1462886 GGTTTGAGTATCCC
1 GGTTGGAGTATCCC
1462900 TTCGGAAATA
Statistics
Matches: 197, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.01
51 135 0.69
52 49 0.25
53 11 0.06
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGGAAAATTAATGTTTTAGAAATAAAACCGG
Found at i:1462925 original size:79 final size:79
Alignment explanation
Indices: 1462832--1463006 Score: 264
Period size: 79 Copynumber: 2.2 Consensus size: 79
1462822 GAAATAAAGC
* * * *
1462832 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTT-GGAAATAAAGCCGGGGTTTGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAG-AATAAAGCAGGGGTTAGAGTA
*
1462896 -TCCCTTCGGAAATAA
65 GCCCCTT-GGAAATAA
1462911 CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAGAATAAAGCAGGGGTTAGAGTAG
1 CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAGAATAAAGCAGGGGTTAGAGTAG
1462976 CCCCTTGGAAATAA
66 CCCCTTGGAAATAA
*
1462990 CAGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
1463007 TGATGATTAA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 82 0.93
80 6 0.07
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAGAATAAAGCAGGGGTTAGAGTAG
CCCCTTGGAAATAA
Found at i:1463101 original size:53 final size:51
Alignment explanation
Indices: 1463021--1463142 Score: 131
Period size: 51 Copynumber: 2.4 Consensus size: 51
1463011 GATTAACGGG
* * * **
1463021 GTTGGAGTATCCTCGATTGTGAAAAATTGGTTTTTTTTGGGAATAAAATCGGA
1 GTTGGAGTATCCTCGATTATGAAAAATTAG--TGTTTTGAAAATAAAATCGGA
1463074 GTTGGAGTATTCC-CGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTA-TCCTCGATTATGA-AAAATTAGTGTTTTGAAAATAAAATCGGA
* *
1463125 GTGGGAATATCCTCGATT
1 GTTGGAGTATCCTCGATT
1463143 GCGGAGAATT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
50 3 0.05
51 30 0.51
52 1 0.02
53 22 0.37
54 3 0.05
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.35
Consensus pattern (51 bp):
GTTGGAGTATCCTCGATTATGAAAAATTAGTGTTTTGAAAATAAAATCGGA
Found at i:1465523 original size:13 final size:13
Alignment explanation
Indices: 1465505--1465530 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1465495 CAAAGAATAG
1465505 ATGTATCGATACA
1 ATGTATCGATACA
1465518 ATGTATCGATACA
1 ATGTATCGATACA
1465531 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1465527 original size:34 final size:33
Alignment explanation
Indices: 1465484--1465550 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
1465474 AACTTCCTAG
*
1465484 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
1465518 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
1465551 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:1466004 original size:13 final size:13
Alignment explanation
Indices: 1465986--1466011 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1465976 TACAGCAAGT
1465986 ATGTATCGATACA
1 ATGTATCGATACA
1465999 ATGTATCGATACA
1 ATGTATCGATACA
1466012 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1467755 original size:21 final size:21
Alignment explanation
Indices: 1467722--1467766 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1467712 TTGCAAGTTG
*
1467722 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1467744 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1467764 AAA
1 AAA
1467767 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1469445 original size:15 final size:15
Alignment explanation
Indices: 1469425--1469455 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1469415 TAAAAATGTC
*
1469425 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1469440 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1469455 C
1 C
1469456 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1471552 original size:13 final size:13
Alignment explanation
Indices: 1471534--1471572 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
1471524 ACATTTTTCT
1471534 TTGTATCGATACA
1 TTGTATCGATACA
1471547 TTGTATCGATACA
1 TTGTATCGATACA
1471560 TTGTATCGATACA
1 TTGTATCGATACA
1471573 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1473381 original size:14 final size:14
Alignment explanation
Indices: 1473362--1473405 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
1473352 AAATAAATTT
1473362 TTGATATGAATTAC
1 TTGATATGAATTAC
*
1473376 TTGATA--AATT-T
1 TTGATATGAATTAC
1473387 TTGATATGAATTAC
1 TTGATATGAATTAC
1473401 TTGAT
1 TTGAT
1473406 TAAGGGGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 6 0.24
12 4 0.16
13 4 0.16
14 11 0.44
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (14 bp):
TTGATATGAATTAC
Found at i:1473388 original size:25 final size:25
Alignment explanation
Indices: 1473354--1473405 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1473344 ATATGTGCAA
1473354 ATAAATTTTTGATATGAATTACTTG
1 ATAAATTTTTGATATGAATTACTTG
1473379 ATAAATTTTTGATATGAATTACTTG
1 ATAAATTTTTGATATGAATTACTTG
1473404 AT
1 AT
1473406 TAAGGGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (25 bp):
ATAAATTTTTGATATGAATTACTTG
Found at i:1473490 original size:38 final size:40
Alignment explanation
Indices: 1473442--1473521 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 40
1473432 GGGTGATAAA
**
1473442 GGGGAGAATGCGTAAA-TTGCTACAA-TTATTTT-ATTAAG
1 GGGGAGAATGCACAAATTTGCTA-AATTTATTTTGATTAAG
*
1473480 GGGGAGAATGCACAAATTTGTTAAATTTATTTTGATTAAG
1 GGGGAGAATGCACAAATTTGCTAAATTTATTTTGATTAAG
1473520 GG
1 GG
1473522 AGAAATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 16 0.44
39 12 0.33
40 8 0.22
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (40 bp):
GGGGAGAATGCACAAATTTGCTAAATTTATTTTGATTAAG
Found at i:1474163 original size:13 final size:13
Alignment explanation
Indices: 1474145--1474170 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1474135 TACAGCAAGT
1474145 ATGTATCGATACA
1 ATGTATCGATACA
1474158 ATGTATCGATACA
1 ATGTATCGATACA
1474171 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1483976 original size:17 final size:17
Alignment explanation
Indices: 1483944--1483977 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1483934 AAAAAGATAG
*
1483944 AAAAAAACTAAAAAAAC
1 AAAAAAACCAAAAAAAC
1483961 AAAAAAACCAAGAAAAA
1 AAAAAAACCAA-AAAAA
1483978 ACATAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.82, C:0.12, G:0.03, T:0.03
Consensus pattern (17 bp):
AAAAAAACCAAAAAAAC
Found at i:1485958 original size:51 final size:50
Alignment explanation
Indices: 1485843--1485958 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
1485833 TTTTAACTAG
* * ***
1485843 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGGAAAAAAATAGA
1 ATGTATCGATACATTGAAAAATGTACCAATACAGCAGGGAAAAAAATAGA
* * *
1485893 ATGGATCGATACATTGAAGAATGTACCAATACAGCAGGGTAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTACCAATACAGCAGGG-AAAAAAATAGA
*
1485944 ATGTATCAATACATT
1 ATGTATCGATACATT
1485959 CATACATGTG
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
50 32 0.58
51 23 0.42
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (50 bp):
ATGTATCGATACATTGAAAAATGTACCAATACAGCAGGGAAAAAAATAGA
Found at i:1486245 original size:19 final size:19
Alignment explanation
Indices: 1486221--1486282 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
1486211 TTTTGAACAT
*
1486221 CAAACAGTTTGTATCGATA
1 CAAACAGATTGTATCGATA
*
1486240 CAAACAGAAAATGTATCGATA
1 CAAACAG--ATTGTATCGATA
* *
1486261 CATAA-AGGTTGTATCAATA
1 CA-AACAGATTGTATCGATA
1486280 CAA
1 CAA
1486283 TGTATCGATA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
18 1 0.03
19 18 0.51
21 14 0.40
22 2 0.06
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (19 bp):
CAAACAGATTGTATCGATA
Found at i:1486290 original size:32 final size:32
Alignment explanation
Indices: 1486249--1486321 Score: 112
Period size: 32 Copynumber: 2.3 Consensus size: 32
1486239 ACAAACAGAA
1486249 AATGTATCGATACATAAAG-GTTGTATCAATAC
1 AATGTATCGATACAT-AAGTGTTGTATCAATAC
* *
1486281 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCAATAC
1486313 AATGTATCG
1 AATGTATCG
1486322 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 3 0.08
32 35 0.92
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCAATAC
Found at i:1486364 original size:21 final size:21
Alignment explanation
Indices: 1486338--1486379 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1486328 AGCTACTGCC
1486338 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
1486359 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
1486380 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:1486384 original size:13 final size:13
Alignment explanation
Indices: 1486366--1486391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1486356 ATTAAGGAAA
1486366 TGTATCGATACAT
1 TGTATCGATACAT
1486379 TGTATCGATACAT
1 TGTATCGATACAT
1486392 CTAGGAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1488801 original size:52 final size:52
Alignment explanation
Indices: 1488741--1488866 Score: 164
Period size: 52 Copynumber: 2.4 Consensus size: 52
1488731 CTCAATTGTT
* **
1488741 CATAATCGGGGATACTCCAACCCCGGTTTTATTT-TTAAAACACCAAATTTC
1 CATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAAATTTC
* * *
1488792 CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAATTTT
1 C-ATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAAATTTC
* *
1488845 CACAATCGAGGATACTCCAACC
1 CATAATCGGGGATACTCCAACC
1488867 TCATTATTTC
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
51 1 0.02
52 47 0.75
53 15 0.24
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (52 bp):
CATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAAATTTC
Found at i:1488972 original size:79 final size:77
Alignment explanation
Indices: 1488877--1489110 Score: 301
Period size: 79 Copynumber: 3.0 Consensus size: 77
1488867 TCATTATTTC
* * *
1488877 ATCGAGGATACTCCAACCTCGTTACCTCCGAGGAGATACTCCAACCCCGACTTTATTTCCAAAAT
1 ATCGAGGATACTCCAACCCCGTTA-TTTCGAGG-GATACTCCAACCCCGACTTTATTTCCAAAAT
1488942 ATTAATTTCTCATA
64 ATTAATTTCTCATA
* * *
1488956 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-AGTTTTATTTCTAAAA
1 ATCGAGGATACTCCAACCCCGTTA-TTTCGA-GGGATACTCCAACCCCGA-CTTTATTTCCAAAA
* * *
1489020 CATCAATTTTTCATA
63 TATTAATTTCTCATA
* *
1489035 ATCGAGGATACTCCAACCCCGTTATTTC-AGGGATACTCCAACCCCGGCTTTATCTCCAAAATAT
1 ATCGAGGATACTCCAACCCCGTTATTTCGAGGGATACTCCAACCCCGACTTTATTTCCAAAATAT
1489099 TAAATTTCTCAT
66 T-AATTTCTCAT
1489111 CAGGGGATGT
Statistics
Matches: 133, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
76 29 0.22
77 10 0.08
78 5 0.04
79 87 0.65
80 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (77 bp):
ATCGAGGATACTCCAACCCCGTTATTTCGAGGGATACTCCAACCCCGACTTTATTTCCAAAATAT
TAATTTCTCATA
Found at i:1488993 original size:107 final size:107
Alignment explanation
Indices: 1488803--1489001 Score: 260
Period size: 107 Copynumber: 1.9 Consensus size: 107
1488793 TTTAATCGGG
* * *
1488803 GATACTCCAACTCCGATTTTATTTCCAAAAACACCAAATTTTCACAATCGAGGATACTCCAACCT
1 GATACTCCAACCCCGACTTTATTTCCAAAAACACCAAATTTTCACAATCGAGGATACTCCAACCC
1488868 CATTATTTCATCGAGGATACTCCAACCTCGTTACCTCCGAGGA
66 CATTATTT-ATCGAGGATACTCCAACCTCGTTACCTCCGAGGA
* ** * *
1488911 GATACTCCAACCCCGACTTTATTTCC-AAAATA-TTAATTTCTCATAATCGGGGATACTCCAACC
1 GATACTCCAACCCCGACTTTATTTCCAAAAACACCAAATTT-TCACAATCGAGGATACTCCAACC
*
1488974 CCGTTATTT-TCGAGGGGATACTCCAACC
65 CCATTATTTATCGA--GGATACTCCAACC
1489002 CCAGTTTTAT
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
105 4 0.05
106 5 0.06
107 46 0.58
108 24 0.30
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.29
Consensus pattern (107 bp):
GATACTCCAACCCCGACTTTATTTCCAAAAACACCAAATTTTCACAATCGAGGATACTCCAACCC
CATTATTTATCGAGGATACTCCAACCTCGTTACCTCCGAGGA
Found at i:1501535 original size:14 final size:13
Alignment explanation
Indices: 1501516--1501566 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 13
1501506 TCTGTTCTAA
1501516 AAAAAAAACAAAGC
1 AAAAAAAACAAA-C
*
1501530 AAAAAAAACCAAAA
1 AAAAAAAA-CAAAC
1501544 AAAAAAAACAAAAC
1 AAAAAAAAC-AAAC
1501558 AAAGAAAAA
1 AAA-AAAAA
1501567 GAGAGAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 1 0.03
14 22 0.69
15 9 0.28
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:1502721 original size:55 final size:55
Alignment explanation
Indices: 1502635--1502833 Score: 229
Period size: 55 Copynumber: 3.5 Consensus size: 55
1502625 TCTCTCCTTT
*
1502635 CGCCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * *
1502690 CGCCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCTCACACAAGCTGGTGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * * *
1502745 CACCTTTTAGTCCTTAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCC-TTT-C----AAAGCCCACACAAGTTGGTGG
* * *
1502806 C-ACTTCCTAGTCCTCAAAGAGTAGGACG
1 CGCCTT-TTAGTCCTCAAAGAGCAGGACG
1502834 TTCCCTCCTT
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
55 76 0.63
56 3 0.03
57 1 0.01
60 3 0.03
61 37 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (55 bp):
CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
Found at i:1502889 original size:155 final size:155
Alignment explanation
Indices: 1502690--1502988 Score: 492
Period size: 155 Copynumber: 1.9 Consensus size: 155
1502680 AAGTTGGTGG
*
1502690 CGCCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCTCACACAAGCTGGTGGCACCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
* ** *
1502755 TCCTTAAAGAGCAAGATGCCTT-TTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCC
66 TCCTCAAAGAGCAAGACACCTTCTT-CTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTAGTCC
1502819 TCAAAGAGTAGGACGTTCCCTCCTTT
130 TCAAAGAGTAGGACGTTCCCTCCTTT
* * *
1502845 CGCCTTTTTGTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
*
1502910 TCCTCAAAGAGCAGGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTAGTCCT
66 TCCTCAAAGAGCAAGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTAGTCCT
*
1502975 CAAAGAGTGGGACG
131 CAAAGAGTAGGACG
1502989 CCTTTCAAAG
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
155 131 0.98
156 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (155 bp):
CGCCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
TCCTCAAAGAGCAAGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTAGTCCT
CAAAGAGTAGGACGTTCCCTCCTTT
Found at i:1502912 original size:210 final size:211
Alignment explanation
Indices: 1502537--1502931 Score: 639
Period size: 210 Copynumber: 1.9 Consensus size: 211
1502527 TCTCCTTCCA
*
1502537 CTTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CTTTTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
* * *
1502602 CCAGTCCTTAAAGAGTAGGATGCTCTCTCCTTTCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTT
66 CCAGTCCTCAAAGAGTAGGACGCTCCCTCCTTTCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTT
* * * *
1502667 TCAAAGCCCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCTCA
131 TCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCTCA
1502732 CACAAGCTGGTGGCAC
196 CACAAGCTGGTGGCAC
*
1502748 CTTTT-AGTCCTTAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CTTTTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
* * * * * *
1502812 CTAGTCCTCAAAGAGTAGGACGTTCCCTCCTTTCGCCTTTTTGTCCTCAAAGAGTAGGATGCCTT
66 CCAGTCCTCAAAGAGTAGGACGCTCCCTCCTTTCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTT
*
1502877 TTAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTT
131 TCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTT
1502932 CTTCTTTTAA
Statistics
Matches: 168, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
210 163 0.97
211 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (211 bp):
CTTTTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
CCAGTCCTCAAAGAGTAGGACGCTCCCTCCTTTCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTT
TCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCTCA
CACAAGCTGGTGGCAC
Found at i:1503001 original size:210 final size:203
Alignment explanation
Indices: 1502569--1503044 Score: 558
Period size: 210 Copynumber: 2.3 Consensus size: 203
1502559 GATGCCTTTT
* * * *
1502569 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTTAAAGAGTAGGATGCTCTCTCCTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGTAGGACGCTCCCTCCTT
* *
1502634 TCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCGCCTTTTA
65 TCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTA
* * * * * *
1502699 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAG
130 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACAAAAGCTGGTGGCACCTTCTAGTCCTCAAAG
*
1502764 AGCAAGATG
195 AGCAAGACG
*
1502773 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGACGTTCC
1 CC-TTT-C----AAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGTAGGACGCTCC
* * * * *
1502838 CTCCTTTCGCCTTTTTGTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCAC
59 CTCCTTTCGCCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCAC
*
1502903 CTTTTAGTCCTCAAAGAGCAGGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCA-CTTC
124 CTTTTAGTCCTCAAAGAGCAGGACACC-T-TTC----AAAGCCCACAAAAGCTGGTGGCACCTT-
***
1502967 CTAGTCCTCAAAGAGTGGGACG
182 CTAGTCCTCAAAGAGCAAGACG
** * *
1502989 CCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGTAGGACGC
1503045 CTTTTAAAGC
Statistics
Matches: 229, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
204 2 0.01
205 3 0.01
209 2 0.01
210 169 0.74
211 5 0.02
212 3 0.01
214 1 0.00
215 6 0.03
216 38 0.17
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (203 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGTAGGACGCTCCCTCCTTT
CGCCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACAAAAGCTGGTGGCACCTTCTAGTCCTCAAAGA
GCAAGACG
Found at i:1503028 original size:55 final size:56
Alignment explanation
Indices: 1502854--1503099 Score: 284
Period size: 55 Copynumber: 4.4 Consensus size: 56
1502844 TCGCCTTTTT
* * * *
1502854 GTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTT-TA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTA
* * *
1502909 GTCCTCAAAGAGCAGGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCA-CTTCCTA
1 GTCCTCAAAGAGCAGGACGCC-T-TTC----AAAGCCCACACAAGTTGGTGGCACCTTTCTA
** **
1502970 GTCCTCAAAGAGTGGGACGCCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTC-A
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTA
*
1503025 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCTA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTA
* *
1503080 GTCCTCGAAGTGCAGGACGC
1 GTCCTCAAAGAGCAGGACGC
1503100 TCTCTCTTTT
Statistics
Matches: 162, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
54 3 0.02
55 104 0.64
56 5 0.03
57 2 0.01
59 3 0.02
60 4 0.02
61 41 0.25
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (56 bp):
GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCTA
Found at i:1503111 original size:116 final size:115
Alignment explanation
Indices: 1502854--1503099 Score: 308
Period size: 116 Copynumber: 2.2 Consensus size: 115
1502844 TCGCCTTTTT
* * *
1502854 GTCCTCAAAGAGTAGGATGCCTTTT-AAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAA
1 GTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
*
1502918 GAGCAGGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTA
66 GAGCAGGA-ACCTGC-TCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTA
** ** *
1502970 GTCCTCAAAGAGTGGGACGCC-TTTCAAAGCCCACATGAGTTGGTGGCACCTTTCAGTCCTCAAA
1 GTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
*
1503034 GAGCAGG-A-C-GC-CTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTA
66 GAGCAGGAACCTGCTCTTTTAAAGCCCACAAAAGTTGGTGGCA-CTTCCTA
* *
1503080 GTCCTCGAAGTGCAGGACGC
1 GTCCTCAAAGAGCAGGACGC
1503100 TCTCTCTTTT
Statistics
Matches: 116, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
110 46 0.40
111 3 0.03
112 1 0.01
113 1 0.01
114 1 0.01
115 3 0.03
116 61 0.53
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (115 bp):
GTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
GAGCAGGAACCTGCTCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTA
Found at i:1503150 original size:265 final size:266
Alignment explanation
Indices: 1502637--1503252 Score: 757
Period size: 265 Copynumber: 2.3 Consensus size: 266
1502627 TCTCCTTTCG
* *
1502637 CCCTTTAGTCCTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACAAGTTGGTGGCGCCTTT
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGC-ACTTC
* * *
1502697 TAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAA
65 TAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAA
* *
1502762 AGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAG
130 AGAGCAAGA-GAC--TGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAG
* * * * * * * *
1502827 TAGGACGTTCCCTCCTTTCGCCTTTTTGTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAA
192 CAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAA
1502892 GCTGGTGGCA
257 GCTGGTGGCA
* * *
1502902 CCTTTTAGTCCTCAAAGAGCAGGACACCTTCTTCTTTTAAAGCCCACAAAAGTTGGTGGCACTTC
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACTT-
* ** *
1502967 CTAGTCCTCAAAGAGTGGGACGCCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTCAGTCCTCA
64 CTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCA
* *
1503032 AAGAGC-AG-GAC-GCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCGAAGTGC
129 AAGAGCAAGAGACTGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGC
* * *
1503093 AGGACGCTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAG
193 AGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
* *
1503158 TTGGTGGTA
258 CTGGTGGCA
** *
1503167 CCCTCCAGTCCTCAAAGAGCAGGACGCCTTTT-TTCTTCAAAGCCCACGCAAGTTGGTGGCACTT
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTT-TT-AAAGCCCACACAAGTTGGTGGCAC-T
* * *
1503231 TGTAGTCTTCAAAGAGCAGGAC
63 TCTAGTCCTCAAAGAGTAGGAC
1503253 TCACTTTATT
Statistics
Matches: 301, Mismatches: 39, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
263 2 0.01
264 4 0.01
265 195 0.65
266 6 0.02
267 3 0.01
268 2 0.01
270 5 0.02
271 84 0.28
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (266 bp):
CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCT
AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
GAGCAAGAGACTGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGG
ACGCTCCCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTG
GTGGCA
Found at i:1503189 original size:94 final size:95
Alignment explanation
Indices: 1503018--1503193 Score: 282
Period size: 94 Copynumber: 1.9 Consensus size: 95
1503008 GTTGGTGGCA
* * *
1503018 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTC
* *
1503083 CTCGAAGTGCAGGACGCTCTCTCTTTTCAC
66 CTCAAAGAGCAGGACGCTCTCTCTTTTCAC
* *
1503113 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGTACCCTCCAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTC
1503177 CTCAAAGAGCAGGACGC
66 CTCAAAGAGCAGGACGC
1503194 CTTTTTTCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
94 69 0.93
95 5 0.07
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (95 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTC
CTCAAAGAGCAGGACGCTCTCTCTTTTCAC
Found at i:1503291 original size:42 final size:42
Alignment explanation
Indices: 1503239--1503383 Score: 161
Period size: 42 Copynumber: 3.3 Consensus size: 42
1503229 TTTGTAGTCT
*
1503239 TCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTGTCC
*
1503281 TCAAAGAGCAGGACGCA-TTTCGTTTTCCT-TTTCTTCTTTGTCC
1 TCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTC-T-TTTGTCC
* *
1503324 TCAAAGAGCAGGACGCTCTTTA-TTTCCTTCTTTTCCCTTCTAGTCC
1 TCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT-TTGTCC
1503370 TCAAAGAGCAGGAC
1 TCAAAGAGCAGGAC
1503384 ACATTTCATT
Statistics
Matches: 88, Mismatches: 5, Indels: 16
0.81 0.05 0.15
Matches are distributed among these distances:
41 7 0.08
42 29 0.33
43 24 0.27
44 3 0.03
45 4 0.05
46 20 0.23
47 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (42 bp):
TCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTGTCC
Found at i:1506881 original size:52 final size:52
Alignment explanation
Indices: 1506737--1506865 Score: 188
Period size: 52 Copynumber: 2.5 Consensus size: 52
1506727 CGAAATATGA
* * *
1506737 AAATTTACATGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGACACATCTGGGC
* * *
1506789 AAATTTGCCTGCATGTAT-TAGTACATTTTATAGTGTATCGACACATCTTGGC
1 AAATTTGCCTGCATGTATCGA-TACATTTCATAGTGTATCGACACATCTGGGC
1506841 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1506866 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
51 1 0.01
52 66 0.97
53 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGACACATCTGGGC
Found at i:1506892 original size:13 final size:13
Alignment explanation
Indices: 1506874--1506898 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1506864 CAAAGATCAG
1506874 TGTATCGATACAA
1 TGTATCGATACAA
1506887 TGTATCGATACA
1 TGTATCGATACA
1506899 TTTTTTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1510522 original size:13 final size:13
Alignment explanation
Indices: 1510504--1510528 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1510494 CAATTTTTTG
1510504 TGTATCGATACAC
1 TGTATCGATACAC
1510517 TGTATCGATACA
1 TGTATCGATACA
1510529 TACTTGCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1514016 original size:52 final size:52
Alignment explanation
Indices: 1513868--1513996 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
1513858 CGAAATATGA
*
1513868 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGT
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
1513920 AAATTTGCCTGAATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1513972 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1513997 AAGATCAGTA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:1514098 original size:19 final size:19
Alignment explanation
Indices: 1514074--1514156 Score: 97
Period size: 19 Copynumber: 4.6 Consensus size: 19
1514064 TCTTATACTA
1514074 TATCGATACAAAACTTATG
1 TATCGATACAAAACTTATG
*
1514093 TATCGATACAACACTTATG
1 TATCGATACAAAACTTATG
1514112 TATCGATAC---A--T-TG
1 TATCGATACAAAACTTATG
*
1514125 TATCGATACAACACTTTATG
1 TATCGATACAAAAC-TTATG
1514145 TATCGATACAAA
1 TATCGATACAAA
1514157 TCGTTGAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
16 2 0.04
19 28 0.51
20 13 0.24
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (19 bp):
TATCGATACAAAACTTATG
Found at i:1514128 original size:13 final size:13
Alignment explanation
Indices: 1514110--1514134 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1514100 ACAACACTTA
1514110 TGTATCGATACAT
1 TGTATCGATACAT
1514123 TGTATCGATACA
1 TGTATCGATACA
1514135 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1514132 original size:32 final size:33
Alignment explanation
Indices: 1514091--1514154 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
1514081 ACAAAACTTA
1514091 TGTATCGATACAACAC-TTATGTATCGATACAT
1 TGTATCGATACAACACTTTATGTATCGATACAT
1514123 TGTATCGATACAACACTTTATGTATCGATACA
1 TGTATCGATACAACACTTTATGTATCGATACA
1514155 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAACACTTTATGTATCGATACAT
Found at i:1514883 original size:21 final size:21
Alignment explanation
Indices: 1514857--1514912 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
1514847 TTTTTATCCA
1514857 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
1514878 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
1514899 AATGTATCGATACA
1 AATGTATCGATACA
1514913 AGGTCCCAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1514966 original size:19 final size:19
Alignment explanation
Indices: 1514942--1515003 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
1514932 TTTTGAACTT
*
1514942 CAAACAGTTTGTATCGATA
1 CAAACAGATTGTATCGATA
*
1514961 CAAACAGAAAATGTATCGATA
1 CAAACAG--ATTGTATCGATA
* *
1514982 CATAA-GGGTTGTATCGATA
1 CA-AACAGATTGTATCGATA
1515001 CAA
1 CAA
1515004 TGTATCGATA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
18 1 0.03
19 19 0.54
21 13 0.37
22 2 0.06
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.26
Consensus pattern (19 bp):
CAAACAGATTGTATCGATA
Found at i:1515009 original size:13 final size:13
Alignment explanation
Indices: 1514991--1515015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1514981 ACATAAGGGT
1514991 TGTATCGATACAA
1 TGTATCGATACAA
1515004 TGTATCGATACA
1 TGTATCGATACA
1515016 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1515011 original size:32 final size:32
Alignment explanation
Indices: 1514970--1515042 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
1514960 ACAAACAGAA
1514970 AATGTATCGATACATAAGGGTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
**
1515002 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
*
1515034 AGTGTATCG
1 AATGTATCG
1515043 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (32 bp):
AATGTATCGATACATAAGGGTTGTATCGATAC
Found at i:1515028 original size:19 final size:17
Alignment explanation
Indices: 1514972--1515034 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 17
1514962 AAACAGAAAA
1514972 TGTATCGATACATAAGGGT
1 TGTATCGATACATAA--GT
1514991 TGTATCGATAC--AA--
1 TGTATCGATACATAAGT
1515004 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG--T
1515023 TGTATCGATACA
1 TGTATCGATACA
1515035 GTGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (17 bp):
TGTATCGATACATAAGT
Found at i:1517574 original size:52 final size:50
Alignment explanation
Indices: 1517449--1517582 Score: 160
Period size: 52 Copynumber: 2.6 Consensus size: 50
1517439 TTAAGTTTCT
* *
1517449 CAATTGTTCATAATTGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTTCATAA-TGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
* * * *
1517500 CAAATTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAACAC
1 CAATTTTTC-ATAAT-GGGGATACTCCAACCCCGATTTTATTTTC-AAAACAC
*
1517553 CAATTTTTCACAATGGAGGATACTCCAACC
1 CAATTTTTCATAATGG-GGATACTCCAACC
1517583 TCATTATTTC
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
51 9 0.13
52 45 0.66
53 14 0.21
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (50 bp):
CAATTTTTCATAATGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
Found at i:1517687 original size:79 final size:78
Alignment explanation
Indices: 1517593--1517824 Score: 308
Period size: 79 Copynumber: 3.0 Consensus size: 78
1517583 TCATTATTTC
* * *
1517593 ATCGGGGATACTCCAATCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTA-TTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1517658 ATTAATTTCTCATA
65 ATTAATTTCTCATA
* * * *
1517672 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTA-TTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
*
1517737 ATCAAATTT-TCATA
65 AT-TAATTTCTCATA
* * *
1517751 ATCGAGGATACTCCAACCCCATTATTTC--GGGGATACTCCAACCCCGGCTTTATCTCCAAAATA
1 ATCGGGGATACTCCAACCCCGTTATTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATA
1517814 TTAAATTTCTC
66 TT-AATTTCTC
1517825 GTCAGGGGAT
Statistics
Matches: 133, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
76 36 0.27
77 2 0.02
78 4 0.03
79 86 0.65
80 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATA
TTAATTTCTCATA
Found at i:1517707 original size:107 final size:107
Alignment explanation
Indices: 1517516--1517715 Score: 244
Period size: 107 Copynumber: 1.9 Consensus size: 107
1517506 TCCTTTAATC
* * *
1517516 GGGGATACTCCAACTCCGATTTTATTTTCAAAAACACCAATTTTTCACAATGGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAAACACCAATTTCTCACAATGGAGGATACTCCAA
*
1517581 CCTCATTATTTCATCGGGGATACTCCAATCCCGTTACCTCCGA
66 CCCCATTATTTCA-CGGGGATACTCCAATCCCGTTACCTCCGA
* * * ** *
1517624 GGGGATACTCCAACCCCGGCTTTA-TTTCCAAAATATTAATTTCTCATAATCGG-GGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAAACACCAATTTCTCACAAT-GGAGGATACTCCA
*
1517687 ACCCCGTTATTTTCGA-GGGGATACTCCAA
65 ACCCCATTA-TTTC-ACGGGGATACTCCAA
1517716 CCTCGGTTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
107 50 0.64
108 27 0.35
109 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTTCAAAAACACCAATTTCTCACAATGGAGGATACTCCAA
CCCCATTATTTCACGGGGATACTCCAATCCCGTTACCTCCGA
Found at i:1519638 original size:21 final size:20
Alignment explanation
Indices: 1519609--1519649 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
1519599 AAATAACTAT
*
1519609 ATAATTTAAATATAAATAAAA
1 ATAAATTAAATATAAA-AAAA
*
1519630 ATAAATTAAATCTAAAAAAA
1 ATAAATTAAATATAAAAAAA
1519650 TTTAAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAATTAAATATAAAAAAA
Found at i:1523757 original size:33 final size:33
Alignment explanation
Indices: 1523714--1523778 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1523704 ATGAGAGCAT
*
1523714 GCATGAAATGCCACCT-AATTAATTTAGGTGGCA
1 GCATGAAATGCCACCTAAATCAA-TTAGGTGGCA
*
1523747 GCATGCAATGCCACCTAAATCAATTAGGTGGC
1 GCATGAAATGCCACCTAAATCAATTAGGTGGC
1523779 TGAAATGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (33 bp):
GCATGAAATGCCACCTAAATCAATTAGGTGGCA
Found at i:1523835 original size:3 final size:3
Alignment explanation
Indices: 1523827--1523858 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1523817 ATTAATAAAT
1523827 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1523859 TACTATCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1524445 original size:42 final size:41
Alignment explanation
Indices: 1524337--1535859 Score: 3106
Period size: 42 Copynumber: 272.5 Consensus size: 41
1524327 AGCAAAAGAG
** * * *
1524337 AAAGAAGTCTCTTGGGTCGAAGCC-AAAGGGCAAACAAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACA-GGCAGAC-AAAGGT
* * * *
1524379 ACAA-AAGTCTCTAGGGTTAAAGCCGACGGGGAGACAAAGGGT
1 A-AAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAA-GGT
* * *
1524421 AAAGAAGTCTCTAAGGTCAAAGCCGACAAGTAGACTAAA-AT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * *
1524462 TAAGAAAGTCTCCAAGGTTAAAGCTAACAGGCACACTAAAGCT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1524505 TAGGAAGTC-CCAAGGTCAAAGCCGATAGGCAAACTACAGGTAAGATT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGC--A-GACA---AAG-GT
* * * *
1524552 AAAGAAGTCTCCAAAGTCAAAGCCAACAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1524594 AAAGAAGTCCCTAGGGTTAAAGCCGACAGGCAGACTAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * *
1524635 AAAGAAGTCTCCAAGGTCAAAGCCAATAGGTAGACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1524677 AAAAAAGTCTCCAAGGTCAAAGCAGACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * *
1524719 AAAAAAATCTCAAAAGTCAAAGTCAACAAGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1524761 -AAGAAAGTCTCCAAGGTCAAAGCCAACAAGCAGACTAAGGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * * * *
1524803 AAGGAAGTCTCCAGGGTCAAAGTCAATAGACAAAGTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * **
1524845 AAA-ATAGTCTCTAGGGTCAAAGCCGATAGGCTGACTAAAGAA
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1524887 AAAGAAGTCTCCAAGGTCAAAACCGA-TGGCAGACAAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1524928 AAGGAAGTCTTTAAGGTCAAAACTGATAGGCAGACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1524970 AAGGAATTCTCCAAGGTCAAAGCAGACATGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1525012 AAAAAAAGTCTTTAGGGTCAAAGCTGATAGGCAGACTAAGGAT
1 -AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGG-T
*
1525055 AAAAAAGTCT-TCAAGGTCAAAGCCGACAGGCAGACTAAAGGT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * **
1525097 AAAAAAGTCTCT-AGAGTCAAAGCCAACAGGCAGAGTAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGACAAAGGT
* * ** * *
1525138 AAGGAAGTCTCAAAAATCAAAGCCGACAGGCAAACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1525180 AAAGAAGTCTCTAAGGTCAAAGCGGAGAAGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1525222 AAAAAAATGT-TC-AAGATCAAAGCCAACAAGAAGACTAAGGGT
1 -AAAGAA-GTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1525264 -AAGCAAGTCT-TCAAGGTCAAAGTCGACAGGTAGACTACAGGT
1 AAAG-AAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** * *
1525306 AAGGAAGTCTCTGGGGTC-AAGCTGACAGGCAGACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1525347 AAGGAAGTCTCTAAAGTCAAAACCGACAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * *
1525389 AAGGAAGTTTCTAGGGTCAAAGCTAACAGGGAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *** * *
1525431 AAGGAAGTCTCCATGGTTAAAGTAAACAGGTAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1525473 -AAGCAAGTCTCTAGGGTCAAAGCCAACAGGCAGACTAAGGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
*
1525515 AAA-ATAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1525557 AAGGAAATCTCCAACGTCAAAGCCAACACGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1525599 AAGGAAGTCTCTAAGGT-TAAGCCGACAGGTAGACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1525640 AAGGAAGTCTCTATGGTAAAAGCCGATAGGCAGACAAAGTT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * * * * *
1525681 AAGGAAGTCTCCAAAGTTAAAGCCAACAGGTAGACTAATG-
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* ** * *
1525721 ATAAGAAAGTCTCCAAGGTCAAAGTAGACAGACAGAGTAAAGGT
1 A-AAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * * * * *
1525765 AAAAAAGTGTCTAAGGTGAAAGACAACAAGAAGACTAAGTGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAG-GT
* * * * * *
1525807 AAGGAAGTCTCCAGGGTCAAAGCCGACAGACAAACTAATGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1525849 AAGGAAGTCTCTAGGGT-TAAGCCGATAGGCAAACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1525890 AAGGAAGTCTCTAGGGTCAAAGCCGATAGGC-GAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAG-AC-AAAGGT
* * * * * * *
1525932 AAGGAAGTTTCTAAGGTCAAAACTGATAGACAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** *
1525974 AAGGAAGTTTCCAAGGTCAAAGTTGACAGGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1526016 AAGGAAGTCTCTAAGGTCAAAGCTGATAGACAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1526058 AAA-ATAGTCTCTAGGGTCAAAGCCAACAAGCAAATTAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * *
1526100 AAAGAAGTCT-TCAAGGTCAAAGCCAATAGGTAGACTAAAGGT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1526142 AAGGAAGTCTCTAGGGT-GAAGCTGACATGTAGACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1526183 AAGGAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * *
1526225 AAAAAAGTTTCTAGGGTCAAAGCTGATAAGTAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * *
1526267 AAGGAAGTCTCAAAGGTCAAAGTTGACACGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1526309 AAAGAAATCT-TCAGGGTCAAAGCTGATAGGCAGACTAAGGGT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * *
1526351 AAA-ATAG--TC-AAGGTCCGAGCTGATAGGCAAACTAAGGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** * *
1526390 AATA-AAGTCTCCAAGGTCAAAGCTAACAAGTAGACTAAAGGT
1 AA-AGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** *
1526432 AAGGAAGTCTCT-AGAATC-AAGCCAATTGGCAGACAAAAAGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1526473 AAAGAAGTCTCGAGGGTCAAAG-TGACAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1526514 AAAGAAGTTTCCAAGGTCAAAGCTGACAGGCAAAGTAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * * * * *
1526556 AAGGAAATCTCCATGGTTAAAGTCGATAGGCAGACTAAAGAAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAG-GT
* * * * * * *
1526599 AAAGGTAAGAACATCTCCAAGGTCAAAGTCGATAAGTA-ATCTCAAGAT
1 AAA-G-AAG----TCTCTAAGGTCAAAGCCGACAGGCAGA-C-AAAGGT
* * * * * *
1526647 AAAGAAGTTTTTAAGGTCAATGCTGACAAGG-AGCCTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGAC-AGGCAGAC-AAAGGT
* * * ** * * *
1526689 AAAGAAGT-TTTCAGGAACAAAGTTGATAGGCAGACTATGAGT
1 AAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACAAAG-GT
* * * * *
1526731 AAAGAAGTCTCCAGGGTCAAAGCTGACAAGCAGACTAAAGGA
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * *
1526773 AAATAAGTCCCCAGGGTTAAAGTCGATAGGCAGACTAATGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1526815 AAGGAAGTCTCCAGGGTCAAAGTCGACAAGTG-A-ACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGAC-AG-GCAGAC-AAAGGT
* * * * * * * *
1526857 AAAGAAGTTTATAGGGTTAAAACTGACGGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * *
1526899 AAGGAAGTCTACCAA-GTCAAAGTCGGTAGGTAGCCTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1526941 AAGGAAGTCTCAAAGGTTAAAGCC-ACAGACAAACTATAGGTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC---A---AA-GGT
* * * *** * *
1526988 AAAGAAGTCTCCAGGGTCAAAGCTGACAAAAAAACTAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** * *
1527030 AAAAAAGTCTCT-AGGATCAAAGCTAACAAGCAGACTAAGGT
1 AAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACAAAGGT
* * *** * * *
1527071 AAGGAAGTCTCCAAGGTCAACTTCGATAGGTAGACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** *
1527113 -AAGAAAATCTCTAACGTCAAAGTGGACAAGCAGACTAAAGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1527155 AAAAAAGTGTCTAAGGTCAAAGCCAACAAGAAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1527197 AAGGAAGTCTCCAAGG-CTAAAGCTGACAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTC-AAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1527239 GAGGAAGTCTCTAGGGTC-AAGTCGACAGGCTGACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1527280 AAAGAAGTCTTTAGGGCCAAAGCCGACAGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1527322 AAGGATGATTTC-AAGGTCAAA-CCTGACAAGAAAACTAAAGGT
1 AAAGAAG-TCTCTAAGGTCAAAGCC-GACAGGCAGAC-AAAGGT
* * * * * ** *
1527364 AAGGAAGTCTCTAGGGTCAAAGTCGATAGGAAGATTGAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * ** ** * *
1527406 AAA-ATGGTCTATCGGGTCAAAGATGATAGGAAGACTAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** *
1527448 AAGGAAGTCTCCAAGGTCAAA-TTGA-TGAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAG-GCAGAC-AAAGGT
* ** * * **
1527489 AAGGAAGTCTCTTGGGTC-AAGTCGACAGGTAGACAAATAAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAA-GGT
* * * *
1527530 AAA-AGAGTCTCCAAGGTCAAAGCTGATAGGCAGACTAAAAGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * * * *
1527572 ATGGAAGTTTCCAAGGTTAAAGCTGATAGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1527614 AAGGAAGCCTCAAAGGTCAAGGTCGAGACGG-AGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACA-GGCAGAC-AAAGGT
* * *
1527656 AAAGAAGTCTCTAAGGTTAAAGCCAACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * *
1527698 AGTGAAGTCTC-AAGGGTCCAAGCCAAAAGGCAG-CTTGAAGGT
1 AAAGAAGTCTCTAA-GGTCAAAGCCGACAGGCAGAC--AAAGGT
* * ** * * *
1527740 AAAGAAGTCTCTAAAGT-TAAGCCGGTAGGTAGATAAAAAGTT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAG--ACAAAGGT
* * *
1527782 AAA-AAGTCTCTAGGGTCAAAGTCGACAAGCAGACAAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * *
1527823 AAGGAAGTCTC-AGGGGTCAAAGCTAACAAGCAAACTAAAGGT
1 AAAGAAGTCTCTA-AGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1527865 -AGGAAAGTCTCCAAGGTCAAAGTCGACAAGTAGACTAAAGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * ***
1527907 AAGGAAGTCTCCAAGGTTAAAGCCAATAGGTAGACTCTGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1527949 AATA-TAGTCTCCAAGGTCCAAA-CCGATAGGAAAACTAAAGGT
1 AA-AGAAGTCTCTAAGGT-CAAAGCCGACAGGCAGAC-AAAGGT
* * *
1527991 AAGGAAGTCTCTAAGGTCAAAGCTGATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1528033 AAGGAAGTCTCTAGGGTC-AAGTCGACAGGCAGACAAGAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAA-AGGT
* * * *
1528074 AAGGAAATCTCCAAGGTCAAAGCCGATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * * *
1528116 AAGGAAGTTTCTAGGGTCAAAGTTGACAAGTAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * *
1528158 AAGGAAGTCTCTAGGGTCAAATTCGACAGGCATACTAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * ** *
1528200 AAGGAAGTCTCCAAGGTGAAAGGCGACAAACAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1528242 AAAAAAGTGTCCAGGGTTAAA-CCGACA-ACTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGC-AGAC-AAAGGT
* * * * * * * *
1528283 AAGGAAGTCTCTTAGGTC-AAGCTGATAGGAAAATAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * *
1528324 -AAGAAAGTCGT-TAGGGTCAAAGCCGATAAGCAGACTAAAGGT
1 AAAG-AAGTC-TCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1528366 AAAGAAGTTTCTAAGGTCAAAGTCGACAAGCAAAGTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * *
1528408 -AAGAAAGTCTC-AAGGGTCAAAGTCGATAGGCAAACTAAGTGT
1 AAAG-AAGTCTCTAA-GGTCAAAGCCGACAGGCAGACAAAG-GT
* *
1528450 AAAGAAGTCTCTAAGGTCAAAGCCAATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * *
1528492 ATGGAAGTCTCT-AGTGTCAAAGTCGACAGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* ** * *
1528534 -AAGAAAGTCTCCT-TGGTCAAAGTTGATAGGTAGACTAAAGGT
1 AAAG-AAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** ** * *
1528576 AAGGAAGTCTC-CCGAGTCAAAGTTGACAGGCAAACTAAAAGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1528618 AAGGAAAAT-TCCAAGGTCAAAGTCGATAAGCAGACTAAAGACT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAG-GT
* * ** *
1528661 AAGGGTAAGAAAGTCTCTAAAGTC-AAGCCGATAGAAAGACTAAGGGT
1 -A----AAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * *** *
1528708 AATGAAGTTTCCCATGTCAAAATTGACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * *
1528750 AGGGAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1528792 AAGGAAGCCTCCAAGGCCAAAGCCAATAGGTAGACTAAAGG-
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1528833 AAAGGAAGTTTCTAAGGTCAAAGTCGACAGACAGACTATAAGTAAGGGT
1 AAA-GAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC----A--AA-GGT
* * * *
1528882 AAAGAAGTCTCCAAGGTCAAAGCTGACAGGTAGACTTAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *** * *
1528924 AAAAAAGTATCCAAGGTGAAAGTTAACAGGTAGACTAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * *
1528965 AAGGAAGTCTAC-AAGGTTAAAACCGACACGCAAACTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1529007 AAGGAAGTCTCCT-AGGTCAAAGACGATAGGTAGACTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1529049 AAGGAAGTCTCTAAGGTCAAAACTGACA--AAGAACTTGAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAG-AC--AAAGGT
* * * *
1529091 AAGGAAGTCTCT-AGAGT-TAAGCTGACAAGG-AGACAAAAAGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGAC-AGGCAGAC-AAAGGT
* * * *
1529132 AAAGAAGTCTTTAGGGTCAAAGCCGATAGGCAGACTAAAGCT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * ** * *
1529174 AAGGAAGTTTCCAAGGTCAAA-CCTGAAAGATAAACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCC-GACAGGCAGAC-AAAGGT
* * *** *
1529216 AAAAAAGTCTCCAAGGTCAAAATTGACAGGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * **
1529258 -AAGAAAGTCTC-AAGGGTCAAAGCTAATAAGTAGATTGAAGGT
1 AAAG-AAGTCTCTAA-GGTCAAAGCCGACAGGCAGA-CAAAGGT
* * *
1529300 AAA-ATAGTCTCTAAGGTCAAAGCTGATAGGCGGACTAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1529342 AAGGAAGTCTC-AGAGGTCAAAGTCGATAGGTAGACTAAAGGT
1 AAAGAAGTCTCTA-AGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1529384 AAGGAAGTCTCTAGGGTC-AAGCCGATAGGCAAACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1529425 AAAAAAGTCTCTAGGGTCAAAGTCGATAGGGAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** * *
1529467 AAA-ATAGTCTCCAAGGTCAAAGTTGATAGGCACACTAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1529509 AAAAAAGTCTCTAGGGTTAAAGGCGACAAGCA-ATGTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA--CAAAGGT
* * * * * *
1529551 AATGAAATCTCCATGGTCAAAGTCGACATGCAGACAAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1529593 AAGGAAGTCTTTAGGGTC-AACCCGACAAGCAAACAAATAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAA-GGT
* * * *
1529634 AAAGAAGTCTCCAAGGTCAAAGCTGACAGGAAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1529676 AAAGAAGTCTCT-AGAGTCAAAGTCGACACGTAGACTAAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * *
1529718 AAGGAAGTCTCCAGGGACAAAGTCGGCGGGTC-GACTAAAGACT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGG-CAGAC-AAAG-GT
* * * ** *
1529761 AAGGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACCAAGGGT
1 -A----AAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * * *
1529809 AATGAAGTTTCCAAGGTCAAAGCCAACAAGCAGACTAAAGTT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * * **
1529851 AAGGAAGTTTCTAGGGTCAAAGTCAATAAGCAAATTAAGGTT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGG-T
* * * *
1529893 AAGGAAGTCTCTAAGGTCAAAGTCGATAGGCAGACTAAAGGC
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
*** * *
1529935 AAAGAAGTCTCTAAGGTCAAAATTGATAGGCAAACTGCAGGTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA---CA---AA-GGT
* * * * * **
1529983 AAAAAAGTCTTTAAGGTCAAAGCTGACACGTAGGTTAAA-GT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCA-GACAAAGGT
* * * * * *
1530024 TAAGAAAGTCTCCAAAGTCAAAG-CGAATAAGCACACTAAAGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCG-ACAGGCAGAC-AAAGGT
* * * *
1530067 ATAGAAGTTTCT-AGTGTCAAAGCCGACAGGTAGACAAAAAGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * * *
1530109 ATGGAAGTTTCCAAGGTCAAAGTCGATAGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * ** * * *
1530151 AAGGAAATTTCTAGGGTCAAAGCTAATAGGAAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1530193 AAGGAAGTCTCCATGATCAAA-CTCAACAGGCAGAGTAAAGATTAAGG
1 AAAGAAGTCTCTAAGGTCAAAGC-CGACAGGCAGA-CAAAG-----GT
* * * *** * *
1530240 ATAAGAGAGTCTTTAGGGACAAAATTGATAGGCAGACTAAGGGT
1 A-AAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** *
1530284 AAAAAAGTTTCCAAGGTCAAAGCTAACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1530326 AAGGAAGTCTCTAAGG-CTAAAGTCGATAGGCAGACTAGGGAT
1 AAAGAAGTCTCTAAGGTC-AAAGCCGACAGGCAGACAAAGG-T
* * * * * * *
1530368 AAAGAAGT-TTTCAAGGTCAAACCCGAGAAGCAAACTTAAGAT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** * * *
1530410 AAAGAAGTTTCT-AGGCTCAAAGTAGACAAGCAGATAAGGGT
1 AAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACAAAGGT
1530451 AAAGAAGTCTCT-AGAGTCAAAGCCGACAGGCAGACTAAAAATTAAGTGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-----A--AAG-GT
* * ** * *
1530500 -AAGAAGTCTTTAGGGTCAAAATCGATAGGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1530541 AAAAAAGTTTCCAAGATCAAAGCCAACAAGCAGACAAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1530583 AAGGAAGTCT-TTAGGGCTAAAGTCAATAGGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTC-AAAGCCGACAGGCAGAC-AAAGGT
* * * * **
1530625 AAGGAAGTATCCAAGGTCAAAGCCGACAAGCAGACTAAACAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1530667 AAAGAAGTTTCCAAGCTTAAAGCCGACAAGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1530709 AAAGAAGTCTCCAAAGTCAAAGCTGTCAGGCGGACTAAAGATT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAG-GT
* * * * **
1530752 AAGGGTAAGAAAGTCT-TCAAGGTCAATGTCGATAGGCAAACTACGGGT
1 -A----AAG-AAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * ** *
1530800 AAAAAAGTTTTTAAGGTTAAAGCCGACAAACACACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * * *
1530842 AAGGAAGCCTCTAAGGCCAAAGTTGACAGACAAACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * * *
1530884 AAAAAAGTCTCCAAGGTCAAAGTTGGC-GAGCAAACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAG-GCAGAC-AAAGGT
* * * ** ** * *
1530926 AAAGAATTTTC-CAGCAACAAAGCCGACAAACAAACTAAAAGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1530968 AAAGAAGCCTATAGGGTTAAA-CCAACAGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1531009 AAGGAAGTTTCGAAGGTCAAAGCTGACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1531051 AAGGAAGTCTCTAAGGTCTAAA-CTGACAAGCAGACTATAGGTAAGGGT
1 AAAGAAGTCTCTAAGGTC-AAAGCCGACAGGCAGAC---A---AA-GGT
* * * * * *
1531099 AAAAAAGCCTC-AAGGTCATAGGCGACAAGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1531140 AAAGAAGTCTCCAAGGTCAAAGCTGACATGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * **
1531182 AAAAAAGTCTCCAAGGCCAAAG--TACATGGCAAACTGAGGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACA-GGCAGACAAAGG-T
* * * ** *
1531223 AAAAAAGTATGTAAGGTCAAAGCTAACGGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * * *
1531265 ATGGAAGTCTCTAACGTCAAAGCCAATAGGCAGGCTAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1531307 AAAGAAGTCTCT-AGAGTTAAGGGCGATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
*
1531349 -AAGAAAGTCTCTAAGGTCAAAGCCGACAAGCAGACTAAAGAG-
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAG-GT
* * * * *
1531391 AATGAAGTCTCTAAGGTCAAAGCTGACTGGTAGAATAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAG-ACAAAGGT
* * * * * * *
1531433 AAAAAAGTCTCCAGGGTCAAAGTCGACCGGTAGACTAAATGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1531475 AAGGAAGCCTCCAAGGTCAAAGTCGACA-GCTAGACTAAAGACTAAGACT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGC-AGAC-AAAG-----G--T
* * * * *
1531524 AAAAAAGTCTAC-AAGG-CGAAGCCGATAGGCAAACTAAGGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * *** *
1531565 AAAAAATTTTCCAAGGTCAAAACTGATAATTTA-ACAAAACGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGA-CAGGCAGAC-AAAGGT
* * ** * * *
1531607 AAAAAAGTCTC-AAGGGCCAAAGTTGATAGGCAAATAAAGGGT
1 AAAGAAGTCTCTAA-GGTCAAAGCCGACAGGCAGACAAA-GGT
* ** * * *
1531649 AAAGAAGTCTCCAAGGTCAAAGTTGAGAAGCAGACTAGAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1531691 AAAGAAGTCTCCAAGGTTAAAGTCGACATGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * *
1531733 AAAGAAGTCTCTTGGGTCAAAGCTGACATGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1531775 -ATGAAAGTCTCCAACGTCAAAGCTGACAGGCAGATAAAAAGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * *
1531817 AAGGAAGTCACTAGGGTCAAAGTCGATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * ** * *
1531859 AAAAAAATTTCCAGGGTCAAAGTTGACAGGCAAACTAAAGCT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1531901 AAGGAAGTCTCCAGGGTCAAAGTCGACAAGCATATTAGAA-GT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CA-AAGGT
* * * * * * *
1531943 AAAGAAGTCTCCAACGTGAAAACCGATAGGAAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1531985 -AAGAAAGTGTCCATGGTCAAATCCGACAAGTAGACTAAAGCT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * * **
1532027 ACAGAAGTCTCTAAGGT-TAAGCTAACAAGCAGAAAAAAAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * * * *
1532067 TAAGAAAGTCTTTAGGGTCAAAGCTGATAGGCAGACCGAGGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * *
1532110 AAAGAAGT-TTTCCAGGTCAAAGCCAACAAGCAGACTAAAGGT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** *** *
1532152 AAAAAAGTCTTTAAGGT-AAAGGTTGACAGATGGACTAAGGT
1 AAAGAAGTCTCTAAGGTCAAA-GCCGACAGGCAGACAAAGGT
* * * *
1532193 AAAGAAGTCTTTAGGGTCAAAGTCGACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* *
1532235 ATAGAAGTCTCT-AGTGTCAAAGCCGATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* *
1532277 -AAGAAAGTCTCCT--GGTCAAAGCTGACAGGCAAACTAAAGGT
1 AAAG-AAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1532318 AAGGACGTCTCTAGGGTCAAAGTCGACACGCAGACTAAAGACTTAGGGC
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC---A-A---A-GGT
* * * * ** *
1532367 AAAAAAGTCTCCAAGGTCAAAGCTGATAGAAAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * ** *
1532409 AATGAAGTTTCCAAGGCCAAAGCCGACAAACAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1532451 AAGGAAGT-TTTCAATGTTAAAGTCAACAGGCAGACTAAGGGT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC-AAAGGT
** * *
1532493 AATA-AAGTCTCTAAGGTCAAAATCGACAGGCAGAATAAAGGC
1 AA-AGAAGTCTCTAAGGTCAAAGCCGACAGGCAG-ACAAAGGT
* * * *
1532535 AAGGAAGTCTCCAAGGTCAAAGCTGACTGGCAGACTATAGTTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC---A---AA-GGT
* * * * *
1532583 AAAGAAGTCTCCAAGGTTAAAGCCGATAAGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1532625 AAAAAAGTATCTAAAGTAAAAGTCGACAGGCAGACTAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * ** *
1532666 AAGGAAGTCTCCAAGGTCAAAACGGACAGTAAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * * * * *
1532708 AAGGAAGTC-CTAGGGTTGAAGTCAACATGTACACCAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * *
1532749 AAGGATGTCTCCT-AGGTCAAAACTGACA-GCTAAACTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGC-AGAC-AAAGGT
* * * * * *
1532791 AAGGAAGTCTCCAAGGTCAAAGCCAACAGGTAGCCTAATGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * *
1532833 TAGGAAATCTGT-TGG-----GTCGACAGGGAGACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1532869 AAGGAAGTTTCTAGGGTC-ACGACCGATAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAG-CCGACAGGCAGAC-AAAGGT
* * * * * * * *
1532911 AAGGGAGTTTCTATGGTCAAAGCTGAAAGGTAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1532953 AAAGAAGTCTCTAAGGTCAAAGTCAACAGGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1532995 AAGGAAGTCTCT-AGGATTAAAGCCGATAGGTAGACTAAAGG-
1 AAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * *
1533036 AAAAATAGTCTTTAGGGTCAAAGTCGATAGGAAGTCAAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1533079 AAAGAAGTCTCAAAGGTCAAAGCCAACAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * **
1533121 AAGGAAGTCTCTAGGGTC-AAGCCGATAGGGAAACAAAAAAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * *
1533162 AAAGAAGTATTTAGGGTCAAAGTTGACAGGAAGACAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * * *
1533203 AAA-ATAGCCTC-AAGGGTCAAAACTGACAAGTAGACTAAAGCT
1 AAAGA-AGTCTCTAA-GGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ***
1533245 AAGGAAGTCTC-AA-GTCTTAAAGTCGACAAAAAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTC--AAAGCCGACAGGCAGAC-AAAGGT
* * *** *
1533287 AAAAAAATCTAC-AAGGTCAAA-CCTGACATATAGACAAAAGT
1 AAAGAAGTCT-CTAAGGTCAAAGCC-GACAGGCAGACAAAGGT
* * * * * * *
1533328 TAAGAAAGTCTCCAAGGTCAAAGCTGATATGAAAACTAAAGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1533371 AAAGAAGTAT-TTAGAGTCAAAGTCGACATGTAGACTAAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1533413 AAGGAAGTTTCCTAA-GTCAAAGTCAACAGGTAGACTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * **
1533455 AAGGAAATCTCTAAGGTCAAAGGTGACATGCAGACAAAAAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * ** * * * *
1533496 TAAGAAACTCTCCAAGGTCAAAGTTGATAGGAAAACAAAAGAT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1533539 AAAGAAGTCT-TTAGAGTCAAAGTCGACATGTAGACTAAAGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* *
1533581 AAAGAAGTTTCCT-AGGTCAAAGCCGACAGGTAGACTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1533623 AAGGAAGTTTCTAAGGTCAAAGTCGACAGGCAGACTAAAGACT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAG-GT
* * ** * * *
1533666 AAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGA-A-AAAAATTAAGGGT
1 -A----AAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * * *
1533712 AATGAAGTTTCCAAGGTCAAAGCCGACAAGCAGACTAAGGG
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * * * *
1533753 CAAGAAAGTCTCTAGGGTCAAAGTCGATAGGAAAACTAAGGGT
1 AAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
*
1533796 AAAGAAGTCTCTAAGGTCAAAGCCGACAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1533838 GAGGAAGTCTCTAAGGTCAAAGCTGATAGGTTGACTACAGGTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGG--CA-GACA---AA-GGT
* * *
1533886 AAAGAAGTCTCCAAGGTCAAAGCCGAGAGGCAAACTAAAGGTT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGG-T
* * * * * * *
1533929 AAA-AAGTCTCCAAAGTTAAAGTCGATAAGCAGACTAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* * * * * *
1533969 AAAAAAGTCTCCAGGGTCAAAACCGACAAGCAGACAAACGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAA-GGT
*
1534011 AAAGAAGTCTCCT-AGGTCAAAGCGGACTA-GCAGACTAAAGGT
1 AAAGAAGTCT-CTAAGGTCAAAGCCGAC-AGGCAGAC-AAAGGT
* * * * *
1534053 -ATGAAAGTCTCT-AGTGTCAAAGCCGACAAGTAAACAAAAAGT
1 AAAG-AAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
** * * * * *
1534095 ATGGAAGTCTCCACGGTCAAAGCCAACAAGCAGACTAAAGGG
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1534137 AAGGAAGTTTCCAAGGTCAAAGCTGATAGGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1534179 AAAGAAGTCTCTAGGGTCAAAGTCGATAAGCAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1534221 AAAGAAGTTTCCAAGGTCAAAGTCAACAAGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1534263 AAGGAAGTCTC-CAGGTCTAAAGTCGATAGGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTC-AAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1534305 AAAGAAGTCTCCAATGTCAAAGCTGACAAGCAGACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1534347 AAAGAAATTTCT-AGGCTCAAAGCCGATAGGCA-ATCTAAGGGT
1 AAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGA-C-AAAGGT
* * *
1534389 AAAGAAGTCTC-CAGAGTCAAAGCTGACAAGCAGACTAAAGATTAAGGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-----A--AA-GGT
* * * *
1534438 AAAAAAGTCAT-TAAGGTCAATA-CCGATAGGCAAACTAATGGT
1 AAAGAAGTC-TCTAAGGTCAA-AGCCGACAGGCAGAC-AAAGGT
* * * * *
1534480 AAAAAAGTTTC-AAGGTCAAAGCTGACAAGCAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * *
1534521 AAGGAAGTCTCAAAGGCCAAAGTTGACAGACAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1534563 AAAGAAGTCTCTAAGGTTAAAGCGGACAAGCAAACTGAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* ** ** * *
1534605 AAATAAGTCTCTAAGGTCAAAGTTGACAAACGGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1534647 AAAGAAGTCTCGAAGGTCAAAGCTGAGAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * ** * *
1534689 AACGAAGTCTCGAAGGTCAAAGTGGATAGGCATATCAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
** * * * * * *
1534731 ATGGAAGTCTCCAGGGTCAAAGCTGATAGGCAAAATAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGC-AGACAAAGGT
* * * * ** * *
1534773 AAAGACA-TCTC-CAGGTTAAAACCGATAAGAAAACTACAAGTAAGGGA
1 AAAGA-AGTCTCTAAGGTCAAAGCCGA-CAG-GCA-GAC-A--AA-GGT
* * * *
1534820 AAAAAAGTCTC-AAGGTTAAAGACGACAGGTAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1534861 AAAAAACTCTCT-AGGATCAAAGCCAATAGGCAGACTATA-GT
1 AAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1534902 AAGGAAGTCTCTAAGGTCAAAGTCGATAGGCAGGCTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1534944 AAAGAAGTCTCCAAGGTCAAAGCCAAAAAGCAGACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * ** * * *
1534986 AAGGAACTCTCTAAGGTCAAAGCTGACAAACATATTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * * *
1535028 AAA-ATAATCTTTAGGGTTAAAGCCGACAGGCAGACTAAAAGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1535070 -AAGTAAGTCT-TCAAGGTCAAAGCTGACAGACAGATTAAAAGT
1 AAAG-AAGTCTCT-AAGGTCAAAGCCGACAGGCAGA-CAAAGGT
* * * *
1535112 -AAGAAAGTCT-TCAGGGTCAAAGCTGACA-ACTAGACAAAAAGT
1 AAAG-AAGTCTCT-AAGGTCAAAGCCGACAGGC-AGAC-AAAGGT
* * * * *
1535154 AAAAAAGTCTTTAGGGTCAAAGCTGACA-GCTAGACAAAAAGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGC-AGAC-AAAGGT
* * ** *
1535196 AAAGAAGTCT-TCAGGGTTAAAGCTAACAGGCTA-CCTAAAGGT
1 AAAGAAGTCTCT-AAGGTCAAAGCCGACAGGC-AGAC-AAAGGT
* * * * * *
1535238 AAAGAAGTTTCCAAGGTTAAAGCCGATAGGTAAACTAAAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * *
1535280 AAAGAAGTCTCCAAGG-CTAAAGTCGACAGGTAGACTAAAGACT
1 AAAGAAGTCTCTAAGGTC-AAAGCCGACAGGCAGAC-AAAG-GT
* * * * *
1535323 AAGGGTTAGAAAGTCTCT-AGAGTCAAAGCCGATAGACCGATAAAGGGC
1 AA-----AG-AAGTCTCTAAG-GTCAAAGCCGACAGGCAGACAAA-GGT
* * ** * * *
1535371 AAAGAAGTCTCCAAGGTCAATGTTGACAAGCAGATAAAAG-
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
** * * * * * *
1535411 ATAAGAAAACCTCCAAAGTCAAAGCGGACAAGCAAACTATAGGT
1 A-AAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1535455 AAAAAAGTCTCCAAGGTGAAAGCCAACTA-GTAGACTAAGGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGAC-AGGCAGAC-AAAGGT
* * * * * *
1535497 GAGGGAGACTCCAAGGTCAAAGCCGACAGGCAGACTACAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * *
1535539 CAGGGTAAGAAAGTCTCCAAGGTTAAAGTCGACAGGTAGACTCAAGGT
1 -A----AAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * * * * *
1535587 AAAAAAGTCTCTAAAGTCAAAACCGATAAGTAAACTATGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
* ** * * *
1535628 AAAGAAGTCTCCATTGCCAAAGCCGATAGGCAGACTAAAGAT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1535670 AAAAAAGTCTCCAAGGTCAAAGCGGACAAGTAGACTATAGGT
1 AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
* * * * * *
1535712 AAA-AATGCCTCTATA-ATCAAAAG-CAACAAGTAGACTAAGGGT
1 AAAGAA-GTCTCTA-AGGTC-AAAGCCGACAGGCAGAC-AAAGGT
* * * *
1535754 AAAGAAGTCTCT-TGAGTCAAAGCTGACAGGCAAACTAAGGGT
1 AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGAC-AAAGGT
* * *
1535796 AAA-ATAGTCTCCAAGTTCAAAGCTGACAGGCAGACTAAAGGT
1 AAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGAC-AAAGGT
*
1535838 -AAGAAAGTCTCCAAGGTCAAAG
1 AAAG-AAGTCTCTAAGGTCAAAG
1535860 TTGATAAACA
Statistics
Matches: 8606, Mismatches: 2330, Indels: 1090
0.72 0.19 0.09
Matches are distributed among these distances:
36 22 0.00
37 2 0.00
39 30 0.00
40 76 0.01
41 1377 0.16
42 6106 0.71
43 326 0.04
44 32 0.00
45 16 0.00
46 29 0.00
47 94 0.01
48 276 0.03
49 213 0.02
50 7 0.00
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (41 bp):
AAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACAAAGGT
Found at i:1524481 original size:84 final size:83
Alignment explanation
Indices: 1524383--1535859 Score: 4127
Period size: 84 Copynumber: 135.7 Consensus size: 83
1524373 AAAGGTACAA
* * * * *
1524383 AAGTCTCTAGGGTTAAAGCCGACGGGGAGACAAAGGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAA-GGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * ** *
1524448 AAGTAGACTAAAATTAAGA
65 AGGCAGACTAAAGGTAAGG
* ** * * * * * *
1524467 AAGTCTCCAAGGTTAAAGCTAACAGGCACACTAAAGCTTAGGAAGTC-CCAAGGTCAAAGCCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1524531 AGGCAAACTACAGGTAAGATTAAAG
65 AGGCAGACTAAAGGTAAG------G
* * * * * *
1524556 AAGTCTCCAAAGTCAAAGCCAACAGGTAGACTAAAGGTAAAGAAGTCCCTAGGGTTAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1524621 AGGCAGACT-AAGGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1524639 AAGTCTCCAAGGTCAAAGCCAATAGGTAGACTAAAGATAAAAAAGTCTCCAAGGTCAAAGCAGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* **
1524704 AAGCAGACTAAAGGTAAAA
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * *
1524723 AAATCTCAAAAGTCAAAGTCAACAAGCAGACTAAGGGT-AAGAAAGTCTCCAAGGTCAAAGCCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCGA
* *
1524787 CAAGCAGACTAAGGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * *
1524807 AAGTCTCCAGGGTCAAAGTCAATAGACAAAGTAAGGGTAAA-ATAGTCTCTAGGGTCAAAGCCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCGA
* * ** *
1524871 TAGGCTGACTAAAGAAAAAG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * *
1524891 AAGTCTCCAAGGTCAAAACCGA-TGGCAGACAAAAGGTAAGGAAGTCTTTAAGGTCAAAACTGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1524955 AGGCAGACTAAAGATAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1524974 AATTCTCCAAGGTCAAAGCAGACATGCAGACTAAGGGTAAAAAAAGTCTTTAGGGTCAAAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGT-AAAGAAGTCTCTAAGGTCAAAGCCGA
* **
1525039 TAGGCAGACT-AAGGATAAAA
64 CAGGCAGACTAAAGG-TAAGG
* * *
1525059 AAGTCTTCAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCT-AGAGTCAAAGCCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCGA
*
1525123 CAGGCAGAGT-AAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* ** * * * *
1525142 AAGTCTCAAAAATCAAAGCCGACAGGCAAACTAAAGATAAAGAAGTCTCTAAGGTCAAAGCGGAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * **
1525207 AAGCAGACTAAGGGTAAAA
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * *
1525226 AAATGTTCAAGATCAAAGCCAACAAGAAGACTAAGGGT-AAGCAAGTCT-TCAAGGTCAAAGTCG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCT-AAGGTCAAAGCCG
* *
1525289 ACAGGTAGACTACAGGTAAGG
63 ACAGGCAGACTAAAGGTAAGG
*** * * * * *
1525310 AAGTCTCTGGGGTC-AAGCTGACAGGCAGACAAAAAGTAAGGAAGTCTCTAAAGTCAAAACCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1525374 AGGTAGACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * ** * * * * * * ***
1525393 AAGTTTCTAGGGTCAAAGCTAACAGGGAAACTAAAGGTAAGGAAGTCTCCATGGTTAAAGTAAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1525458 AGGTAGACTAAGGGTAAGC
65 AGGCAGACTAAAGGTAAGG
* * * * *
1525477 AAGTCTCTAGGGTCAAAGCCAACAGGCAGACTAAGGGTAAA-ATAGTCTCTAAGGTCAAAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCGA
1525541 CAGGCAGACTAAAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * *
1525561 AAATCTCCAACGTCAAAGCCAACACGTAGACTAAAGGTAAGGAAGTCTCTAAGGT-TAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1525625 AGGTAGACAAAAAGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * * *
1525644 AAGTCTCTATGGTAAAAGCCGATAGGCAGACAAAGTTAAGGAAGTCTCCAAAGTTAAAGCCAACA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACA
* * * *
1525709 GGTAGACTAATGATAAGA
66 GGCAGACTAAAGGTAAGG
** * * * * * * *
1525727 AAGTCTCCAAGGTCAAAGTAGACAGACAGAGTAAAGGTAAAAAAGTGTCTAAGGTGAAAGACAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1525792 AAGAAGACT-AAGTGTAAGG
65 AGGCAGACTAAAG-GTAAGG
* * * * * * * *
1525811 AAGTCTCCAGGGTCAAAGCCGACAGACAAACTAATGGTAAGGAAGTCTCTAGGGT-TAAGCCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1525875 AGGCAAACAAAAAGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1525894 AAGTCTCTAGGGTCAAAGCCGATAGGC-GAACTAAAGGTAAGGAAGTTTCTAAGGTCAAAACTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAG-AC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * *
1525958 TAGACAAACTAAAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* ** * * * *
1525978 AAGTTTCCAAGGTCAAAGTTGACAGGCAGACTAAGGGTAAGGAAGTCTCTAAGGTCAAAGCTGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1526043 AGACAGACTAAGGGTAA-A
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1526061 ATAGTCTCTAGGGTCAAAGCCAACAAGCAAATTAAAGGTAAAGAAGTCT-TCAAGGTCAAAGCCA
1 A-AGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGAAGTCTCT-AAGGTCAAAGCCG
* *
1526125 ATAGGTAGACTAAAGGTAAGG
63 ACAGGCAGACTAAAGGTAAGG
* * * * * * * * * *
1526146 AAGTCTCTAGGGT-GAAGCTGACATGTAGACAAAAAGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
**
1526210 AGGCAGACTAAAGGTAAAA
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * * * **
1526229 AAGTTTCTAGGGTCAAAGCTGATAAGTAAACTAAAGGTAAGGAAGTCTCAAAGGTCAAAGTTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1526294 ACGCAGACTAAGGGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * * * * ** *
1526313 AAATCTTCAGGGTCAAAGCTGATAGGCAGACTAAGGGTAAA-ATAG--TC-AAGGTCCGAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCGA
* * * **
1526374 TAGGCAAACTAAGGGTAATA
64 CAGGCAGACTAAAGGTAAGG
** * * * * *
1526394 AAGTCTCCAAGGTCAAAGCTAACAAGTAGACTAAAGGTAAGGAAGTCTCT-AGAATC-AAGCCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCGA
** * * *
1526457 TTGGCAGACAAAAAGTAAAG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * *
1526477 AAGTCTCGAGGGTCAAAG-TGACAGGTAGACTAAAGGTAAAGAAGTTTCCAAGGTCAAAGCTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1526541 AGGCAAAGTAAAAGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1526560 AAATCTCCATGGTTAAAGTCGATAGGCAGACTAAAGAATAAAGGTAAGAACATCTCCAAGGTCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAG-GTAAA-G-AAG----TCTCTAAGGTCAA
* * * * * * *
1526625 AGTCGATAAGTA-ATCTCAAGATAAAG
58 AGCCGACAGGCAGA-CTAAAGGTAAGG
* ** * * * * * * * **
1526651 AAGTTTTTAAGGTCAATGCTGACAAGG-AGCCTAAAGATAAAGAAGT-TTTCAGGAACAAAGTTG
1 AAGTCTCCAAGGTCAAAGCCGAC-AGGCAGAC-AAAGGTAAAGAAGTCTCTAAGG-TCAAAGCCG
* * *
1526714 ATAGGCAGACT-ATGAGTAAAG
63 ACAGGCAGACTAAAG-GTAAGG
* * * * * * * * * * *
1526735 AAGTCTCCAGGGTCAAAGCTGACAAGCAGACTAAAGGAAAATAAGTCCCCAGGGTTAAAGTCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1526800 AGGCAGACTAATGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1526819 AAGTCTCCAGGGTCAAAGTCGACAAGTG-A-ACTAAAGGTAAAGAAGTTTATAGGGTTAAAACTG
1 AAGTCTCCAAGGTCAAAGCCGAC-AG-GCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCG
* *
1526882 ACGGGCAAACTAAAGGTAAGG
63 ACAGGCAGACTAAAGGTAAGG
* ** * * * * *
1526903 AAGTCTACCAA-GTCAAAGTCGGTAGGTAGCCTAAAGGTAAGGAAGTCTCAAAGGTTAAAGCC-A
1 AAGTCT-CCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * *
1526966 CAGACAAACTATAGGTAAGGGTAAAG
64 CAGGCAGAC--TA---AA-GGTAAGG
* * *** * * * **
1526992 AAGTCTCCAGGGTCAAAGCTGACAAAAAAACTAAAAGTAAAAAAGTCTCT-AGGATCAAAGCTAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGG-TCAAAGCCGA
*
1527056 CAAGCAGACT-AAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
*** * * * * * **
1527075 AAGTCTCCAAGGTCAACTTCGATAGGTAGACTAAAGAT-AAGAAAATCTCTAACGTCAAAGTGGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCGA
* **
1527139 CAAGCAGACTAAAGGTAAAA
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * *
1527159 AAGTGTCTAAGGTCAAAGCCAACAAGAAGACTAAGGGTAAGGAAGTCTCCAAGG-CTAAAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTC-AAAGCCGA
* *
1527223 CAGGTAGACTAAAGGTGAGG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * *
1527243 AAGTCTCTAGGGTC-AAGTCGACAGGCTGACAAAAAGTAAAGAAGTCTTTAGGGCCAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1527307 AGGCAAACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1527326 ATGAT-TTCAAGGTCAAA-CCTGACAAGAAAACTAAAGGTAAGGAAGTCTCTAGGGTCAAAGTCG
1 AAG-TCTCCAAGGTCAAAGCC-GACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCG
* * * * *
1527389 ATAGGAAGATTGAGGGTAA--
63 ACAGGCAGACTAAAGGTAAGG
* * ** * * * * **
1527408 AATGGTCTATC-GGGTCAAAGATGATAGGAAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAA-TT
1 AA--GTCT-CCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCC
*
1527471 GA-TGAGCAGACTAAAGGTAAGG
62 GACAG-GCAGACTAAAGGTAAGG
*** * * ** * *
1527493 AAGTCTCTTGGGTC-AAGTCGACAGGTAGACAAATAATAAA-AGAGTCTCCAAGGTCAAAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAA-GGTAAAGA-AGTCTCTAAGGTCAAAGCCGA
* * *
1527556 TAGGCAGACTAAAAGTATGG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * * * *
1527576 AAGTTTCCAAGGTTAAAGCTGATAGGCAAACTAAAGGTAAGGAAGCCTCAAAGGTCAAGGTCGAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1527641 ACGG-AGACTAAAGGTAAAG
65 A-GGCAGACTAAAGGTAAGG
* * * * ** * *
1527660 AAGTCTCTAAGGTTAAAGCCAACAAGCAGACTAAAGGTAGTGAAGTCTC-AAGGGTCCAAGCCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAA-GGTCAAAGCCGA
* * *
1527724 AAGGCAG-CTTGAAGGTAAAG
64 CAGGCAGAC-TAAAGGTAAGG
* * * ** * * * * *
1527744 AAGTCTCTAAAGT-TAAGCCGGTAGGTAGATAAAAAGTTAAA-AAGTCTCTAGGGTCAAAGTCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAG--ACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* *
1527807 CAAGCAGACAAAAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* ** * * * * *
1527827 AAGTCT-CAGGGGTCAAAGCTAACAAGCAAACTAAAGGT-AGGAAAGTCTCCAAGGTCAAAGTCG
1 AAGTCTCCA-AGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCG
* *
1527890 ACAAGTAGACTAAAGGTAAGG
63 ACAGGCAGACTAAAGGTAAGG
* * * * *** * *
1527911 AAGTCTCCAAGGTTAAAGCCAATAGGTAGACTCTGGGTAATA-TAGTCTCCAAGGTCCAAA-CCG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAA-AGAAGTCTCTAAGGT-CAAAGCCG
* * *
1527974 ATAGGAAAACTAAAGGTAAGG
63 ACAGGCAGACTAAAGGTAAGG
* * * * * *
1527995 AAGTCTCTAAGGTCAAAGCTGATAGGCAGACTAAAGGTAAGGAAGTCTCTAGGGTC-AAGTCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1528059 AGGCAGAC-AAGAAGTAAGG
65 AGGCAGACTAA-AGGTAAGG
* * * * * **
1528078 AAATCTCCAAGGTCAAAGCCGATAGGCAGACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGTTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1528143 AAGTAAACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * ** * * * * * *
1528162 AAGTCTCTAGGGTCAAATTCGACAGGCATACTAAAAGTAAGGAAGTCTCCAAGGTGAAAGGCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
** * **
1528227 AAACAAACTAAAGGTAAAA
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1528246 AAGTGTCCAGGGTTAAA-CCGACA-ACTAGACTAAAGGTAAGGAAGTCTCTTAGGTC-AAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGC-AGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * * *
1528308 TAGG-AAAATAAAAAGTAAGA
64 CAGGCAGACT-AAAGGTAAGG
* * * * * *
1528328 AAGTCGT-TAGGGTCAAAGCCGATAAGCAGACTAAAGGTAAAGAAGTTTCTAAGGTCAAAGTCGA
1 AAGTC-TCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * *
1528392 CAAGCAAAGTAAAGGTAAGA
64 CAGGCAGACTAAAGGTAAGG
* * * * *
1528412 AAGTCT-CAAGGGTCAAAGTCGATAGGCAAACTAAGTGTAAAGAAGTCTCTAAGGTCAAAGCCAA
1 AAGTCTCCAA-GGTCAAAGCCGACAGGCAGACAAAG-GTAAAGAAGTCTCTAAGGTCAAAGCCGA
* *
1528476 TAGGCAGACTAAAGGTATGG
64 CAGGCAGACTAAAGGTAAGG
* * * * **
1528496 AAGTCT-CTAGTGTCAAAGTCGACAGGCAAACTAAAGGT-AAGAAAGTCTCCT-TGGTCAAAGTT
1 AAGTCTCCAAG-GTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCT-CTAAGGTCAAAGCC
* *
1528558 GATAGGTAGACTAAAGGTAAGG
62 GACAGGCAGACTAAAGGTAAGG
* ** * * * * * *
1528580 AAGTCTCC-CGAGTCAAAGTTGACAGGCAAACTAAAAGTAAGGAAAAT-TCCAAGGTCAAAGTCG
1 AAGTCTCCAAG-GTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCG
* * *
1528643 ATAAGCAGACTAAAGACTAAGGGTAAGA
63 ---A-CAGGC---AGACTAAAGGTAAGG
* * * ** * * * ** * ***
1528671 AAGTCTCTAAAGTC-AAGCCGATAGAAAGACTAAGGGTAATGAAGTTTCCCATGTCAAAATTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1528735 AAGCAGACTAAAGGTAGGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * *
1528754 AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAGGGTAAGGAAGCCTCCAAGGCCAAAGCCAAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1528819 AGGTAGACTAAAGGAAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * *
1528838 AAGTTTCTAAGGTCAAAGTCGACAGACAGACTATAAGTAAGGGTAAAGAAGTCTCCAAGGTCAAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC----A--AA-GGTAAAGAAGTCTCTAAGGTCAAA
* * * **
1528903 GCTGACAGGTAGACTTAAGGTAAAA
59 GCCGACAGGCAGACTAAAGGTAAGG
* * *** * * * * *
1528928 AAGTATCCAAGGTGAAAGTTAACAGGTAGACTAAGGTAAGGAAGTCTAC-AAGGTTAAAACCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGGTAAAGAAGTCT-CTAAGGTCAAAGCCGAC
* *
1528992 ACGCAAACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1529011 AAGTCTCCTAGGTCAAAGACGATAGGTAGACTAAAGGTAAGGAAGTCTCTAAGGTCAAAACTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1529076 A--AAGAACTTGAAGGTAAGG
65 AGGCAG-AC-TAAAGGTAAGG
* * * * * *
1529095 AAGTCT-CTAGAGT-TAAGCTGACAAGG-AGACAAAAAGTAAAGAAGTCTTTAGGGTCAAAGCCG
1 AAGTCTCCAAG-GTCAAAGCCGAC-AGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCG
* *
1529157 ATAGGCAGACTAAAGCTAAGG
63 ACAGGCAGACTAAAGGTAAGG
* * ** * * * * ***
1529178 AAGTTTCCAAGGTCAAA-CCTGAAAGATAAACTAAAGATAAAAAAGTCTCCAAGGTCAAAATTGA
1 AAGTCTCCAAGGTCAAAGCC-GACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* *
1529242 CAGGCAGACTAAGGGTAAGA
64 CAGGCAGACTAAAGGTAAGG
** * * * ** *
1529262 AAGTCT-CAAGGGTCAAAGCTAATAAGTAGATTGAAGGTAAA-ATAGTCTCTAAGGTCAAAGCTG
1 AAGTCTCCAA-GGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCG
* *
1529325 ATAGGCGGACTAAAGGTAAGG
63 ACAGGCAGACTAAAGGTAAGG
* * * * *
1529346 AAGTCT-CAGAGGTCAAAGTCGATAGGTAGACTAAAGGTAAGGAAGTCTCTAGGGTC-AAGCCGA
1 AAGTCTCCA-AGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * * **
1529409 TAGGCAAACAAAAAGTAAAA
64 CAGGCAGACTAAAGGTAAGG
* * * * * * **
1529429 AAGTCTCTAGGGTCAAAGTCGATAGGGAGACTAAAGGTAAA-ATAGTCTCCAAGGTCAAAGTTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCGA
* * **
1529493 TAGGCACACTAAAGGTAAAA
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * * * *
1529513 AAGTCTCTAGGGTTAAAGGCGACAAGCA-ATGTAAAGGTAATGAAATCTCCATGGTCAAAGTCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA--CAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* *
1529577 CATGCAGACAAAAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
** * * * * * * *
1529597 AAGTCTTTAGGGTC-AACCCGACAAGCAAACAAATAGTAAAGAAGTCTCCAAGGTCAAAGCTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAA-GGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1529661 AGGAAAACTAAAGGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * * *
1529680 AAGTCT-CTAGAGTCAAAGTCGACACGTAGACTAAAGGTAAGGAAGTCTCCAGGGACAAAGTCGG
1 AAGTCTCCAAG-GTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * *
1529744 CGGGTCGACTAAAGACTAAGGGTAAGA
64 C-AG--G-C---AGACTAAAGGTAAGG
* * * * ** * * * * *
1529771 AAGTCTCTAGGGTCAAAGTCGATAGAAAGACCAAGGGTAATGAAGTTTCCAAGGTCAAAGCCAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1529836 AAGCAGACTAAAGTTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * ** * * *
1529855 AAGTTTCTAGGGTCAAAGTCAATAAGCAAATTAAGGTTAAGGAAGTCTCTAAGGTCAAAGTCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGG-TAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1529920 AGGCAGACTAAAGGCAAAG
65 AGGCAGACTAAAGGTAAGG
* *** * * * *
1529939 AAGTCTCTAAGGTCAAAATTGATAGGCAAACTGCAGGTAAGGGTAAAAAAGTCTTTAAGGTCAAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA---CA---AA-GGTAAAGAAGTCTCTAAGGTCAAA
* * * ** * *
1530004 GCTGACACGTAGGTTAAAGTTAAGA
59 GCCGACAGGCAGACTAAAGGTAAGG
* * * * * *
1530029 AAGTCTCCAAAGTCAAAG-CGAATAAGCACACTAAAGGTATAGAAGTTTCT-AGTGTCAAAGCCG
1 AAGTCTCCAAGGTCAAAGCCG-ACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCG
* * * *
1530092 ACAGGTAGACAAAAAGTATGG
63 ACAGGCAGACTAAAGGTAAGG
* * * * * * * * ** *
1530113 AAGTTTCCAAGGTCAAAGTCGATAGGCAAACTAAAGGTAAGGAAATTTCTAGGGTCAAAGCTAAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1530178 AGGAAAACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1530197 AAGTCTCCATGATCAAA-CTCAACAGGCAGAGTAAAGATTAAGGATAAGAGAGTCTTTAGGGACA
1 AAGTCTCCAAGGTCAAAGC-CGACAGGCAGA-CAAAG-----GTA-AAGA-AGTCTCTAAGGTCA
*** * * **
1530261 AAATTGATAGGCAGACTAAGGGTAAAA
57 AAGCCGACAGGCAGACTAAAGGTAAGG
* ** * * *
1530288 AAGTTTCCAAGGTCAAAGCTAACAAGCAGACTAAAGGTAAGGAAGTCTCTAAGG-CTAAAGTCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTC-AAAGCCGA
* * *
1530352 TAGGCAGACT-AGGGATAAAG
64 CAGGCAGACTAAAGG-TAAGG
* * * * * * * * * **
1530372 AAGTTTTCAAGGTCAAACCCGAGAAGCAAACTTAAGATAAAGAAGTTTCT-AGGCTCAAAGTAGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGG-TCAAAGCCGA
* * *
1530436 CAAGCAGA-TAAGGGTAAAG
64 CAGGCAGACTAAAGGTAAGG
* * *
1530455 AAGTCT-CTAGAGTCAAAGCCGACAGGCAGACTAAAAATTAAGTGT-AAGAAGTCTTTAGGGTCA
1 AAGTCTCCAAG-GTCAAAGCCGACAGGCAGAC-----A--AAG-GTAAAGAAGTCTCTAAGGTCA
** * * **
1530518 AAATCGATAGGCAGACTAAGGGTAAAA
57 AAGCCGACAGGCAGACTAAAGGTAAGG
* * * * * * * * *
1530545 AAGTTTCCAAGATCAAAGCCAACAAGCAGACAAAAGGTAAGGAAGTCT-TTAGGGCTAAAGTCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTC-AAAGCCGA
* *
1530609 TAGGCAGACTAAGGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* * ** * * * *
1530629 AAGTATCCAAGGTCAAAGCCGACAAGCAGACTAAACATAAAGAAGTTTCCAAGCTTAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1530694 AAGCAGACTAAGGGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * * *
1530713 AAGTCTCCAAAGTCAAAGCTGTCAGGCGGACTAAAGATTAAGGGTAAGAAAGTCT-TCAAGGTCA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAG-GT-A----AAG-AAGTCTCT-AAGGTCA
* * * * ** **
1530777 ATGTCGATAGGCAAACTACGGGTAAAA
57 AAGCCGACAGGCAGACTAAAGGTAAGG
* ** * ** * * * * **
1530804 AAGTTTTTAAGGTTAAAGCCGACAAACACACTAAAGGTAAGGAAGCCTCTAAGGCCAAAGTTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * **
1530869 AGACAAACTAAGGGTAAAA
65 AGGCAGACTAAAGGTAAGG
** * * * * * * **
1530888 AAGTCTCCAAGGTCAAAGTTGGC-GAGCAAACTAAGGGTAAAGAATTTTC-CAGCAACAAAGCCG
1 AAGTCTCCAAGGTCAAAGCCGACAG-GCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCG
** * * *
1530951 ACAAACAAACTAAAAGTAAAG
63 ACAGGCAGACTAAAGGTAAGG
* ** * * * * * * * *
1530972 AAGCCTATAGGGTTAAA-CCAACAGGCAAACTAAAGGTAAGGAAGTTTCGAAGGTCAAAGCTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1531036 AAGCAGACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * *
1531055 AAGTCTCTAAGGTCTAAA-CTGACAAGCAGACTATAGGTAAGGGTAAAAAAGCCTC-AAGGTCAT
1 AAGTCTCCAAGGTC-AAAGCCGACAGGCAGAC---A---AA-GGTAAAGAAGTCTCTAAGGTCAA
* * * *
1531118 AGGCGACAAGCAGACTAAGGGTAAAG
58 AGCCGACAGGCAGACTAAAGGTAAGG
* * * * * * *
1531144 AAGTCTCCAAGGTCAAAGCTGACATGTAGACTAAAGGTAAAAAAGTCTCCAAGGCCAAAG--TAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * **
1531207 ATGGCAAACT-GAGGATAAAA
65 A-GGCAGACTAAAGG-TAAGG
* ** ** * ** * * *
1531227 AAGTATGTAAGGTCAAAGCTAACGGGCAGACTAAAGGTATGGAAGTCTCTAACGTCAAAGCCAAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1531292 AGGCAGGCTAAAAGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * * *
1531311 AAGTCT-CTAGAGTTAAGGGCGATAGGCAGACTAAAGGT-AAGAAAGTCTCTAAGGTCAAAGCCG
1 AAGTCTCCAAG-GTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCG
* *
1531374 ACAAGCAGACTAAAGAG-AATG
63 ACAGGCAGACTAAAG-GTAAGG
* * * * * * * * *
1531395 AAGTCTCTAAGGTCAAAGCTGACTGGTAGAATAAAGGTAAAAAAGTCTCCAGGGTCAAAGTCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAG-ACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1531460 CGGTAGACTAAATGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * *
1531479 AAGCCTCCAAGGTCAAAGTCGACA-GCTAGACTAAAGACTAAGACTAAAAAAGTCTAC-AAGG-C
1 AAGTCTCCAAGGTCAAAGCCGACAGGC-AGAC-AAAG-----G--TAAAGAAGTCT-CTAAGGTC
* * * * **
1531541 GAAGCCGATAGGCAAACTAAGGGTAAAA
56 AAAGCCGACAGGCAGACTAAAGGTAAGG
* * * * * *** * * * **
1531569 AATTTTCCAAGGTCAAAACTGATAATTTA-ACAAAACGTAAAAAAGTCTC-AAGGGCCAAAGTTG
1 AAGTCTCCAAGGTCAAAGCCGA-CAGGCAGAC-AAAGGTAAAGAAGTCTCTAA-GGTCAAAGCCG
* * *
1531632 ATAGGCA-AATAAAGGGTAAAG
63 ACAGGCAGACTAAA-GGTAAGG
** * * * * * *
1531653 AAGTCTCCAAGGTCAAAGTTGAGAAGCAGACTAGAGGTAAAGAAGTCTCCAAGGTTAAAGTCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1531718 ATGCAGACTAAGGGTAAAG
65 AGGCAGACTAAAGGTAAGG
*** * * * * * *
1531737 AAGTCTCTTGGGTCAAAGCTGACATGCAGACTAAAGGT-ATGAAAGTCTCCAACGTCAAAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCGA
*
1531801 CAGGCAGA-TAAAAAGTAAGG
64 CAGGCAGACT-AAAGGTAAGG
* * * * * * * * * * **
1531821 AAGTCACTAGGGTCAAAGTCGATAGGCAGACTAAAGGTAAAAAAATTTCCAGGGTCAAAGTTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1531886 AGGCAAACTAAAGCTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * *
1531905 AAGTCTCCAGGGTCAAAGTCGACAAGCATATTAGAA-GTAAAGAAGTCTCCAACGTGAAAACCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CA-AAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * *
1531969 TAGGAAAACTAAAGGTAAGA
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * **
1531989 AAGTGTCCATGGTCAAATCCGACAAGTAGACTAAAGCTACAGAAGTCTCTAAGGT-TAAGCTAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* ** ** *
1532053 AAGCAGAAAAAAATTAAGA
65 AGGCAGACTAAAGGTAAGG
** * * * * * * * *
1532072 AAGTCTTTAGGGTCAAAGCTGATAGGCAGACCGAGGGTAAAGAAGT-TTTCCAGGTCAAAGCCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGAAGTCTCT-AAGGTCAAAGCCGA
* **
1532136 CAAGCAGACTAAAGGTAAAA
64 CAGGCAGACTAAAGGTAAGG
** ** *** * * * *
1532156 AAGTCTTTAAGGT-AAAGGTTGACAGATGGACTAAGGTAAAGAAGTCTTTAGGGTCAAAGTCGAC
1 AAGTCTCCAAGGTCAAA-GCCGACAGGCAGACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1532220 AAGCAGACTAAAGGTATA-G
65 AGGCAGACTAAAGGTA-AGG
* * *
1532239 AAGTCT-CTAGTGTCAAAGCCGATAGGCAGACTAAAGGT-AAGAAAGTCTCCT--GGTCAAAGCT
1 AAGTCTCCAAG-GTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCT-CTAAGGTCAAAGCC
*
1532300 GACAGGCAAACTAAAGGTAAGG
62 GACAGGCAGACTAAAGGTAAGG
* * * * * * * *
1532322 ACGTCTCTAGGGTCAAAGTCGACACGCAGACTAAAGACTTAGGGCAAAAAAGTCTCCAAGGTCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC---A-A---A-GGTAAAGAAGTCTCTAAGGTCAA
* * ** * *
1532387 AGCTGATAGAAAGACTAAGGGTAATG
58 AGCCGACAGGCAGACTAAAGGTAAGG
* * ** * * * * * * *
1532413 AAGTTTCCAAGGCCAAAGCCGACAAACAGACTAAGGGTAAGGAAGT-TTTCAATGTTAAAGTCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCT-AAGGTCAAAGCCGA
* **
1532477 CAGGCAGACTAAGGGTAATA
64 CAGGCAGACTAAAGGTAAGG
* ** * * * * *
1532497 AAGTCTCTAAGGTCAAAATCGACAGGCAGAATAAAGGCAAGGAAGTCTCCAAGGTCAAAGCTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAG-ACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1532562 TGGCAGACTATAGTTAAGGGTAAAG
65 AGGCAGAC--TA---AA-GGTAAGG
* * * * * * * * *
1532587 AAGTCTCCAAGGTTAAAGCCGATAAGTAGACTAAAGGTAAAAAAGTATCTAAAGTAAAAGTCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1532652 AGGCAGACT-AAGATAAGG
65 AGGCAGACTAAAGGTAAGG
* * ** * * * ** * *
1532670 AAGTCTCCAAGGTCAAAACGGACAGTAAAACTAAAGGTAAGGAAGTC-CTAGGGTTGAAGTCAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * *
1532734 ATGTACACCAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1532753 ATGTCTCCTAGGTCAAAACTGACA-GCTAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGC-AGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * *
1532817 CAGGTAGCCTAATGGTTAGG
64 CAGGCAGACTAAAGGTAAGG
* *** * * * * * * *
1532837 AAATCT-----GT-TGGGTCGACAGGGAGACAAAAAGTAAGGAAGTTTCTAGGGTC-ACGACCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAG-CCGA
* *
1532895 TAAGCAGACTAAAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * * *
1532915 GAGTTTCTATGGTCAAAGCTGAAAGGTAAACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGTCAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1532980 AGGCAGACTAAGGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1532999 AAGTCT-CTAGGATTAAAGCCGATAGGTAGACTAAAGG-AAAAATAGTCTTTAGGGTCAAAGTCG
1 AAGTCTCCAAGG-TCAAAGCCGACAGGCAGAC-AAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCG
* * * * *
1533062 ATAGGAAGTCAAAAGGTAAAG
63 ACAGGCAGACTAAAGGTAAGG
* * * * * *
1533083 AAGTCTCAAAGGTCAAAGCCAACAGGTAGACTAAAGGTAAGGAAGTCTCTAGGGTC-AAGCCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * ** *
1533147 AGGGAAACAAAAAATAAAG
65 AGGCAGACTAAAGGTAAGG
* ** * ** * * * * *
1533166 AAGTATTTAGGGTCAAAGTTGACAGGAAGACAAGGGTAAA-ATAGCCTC-AAGGGTCAAAACTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGGTAAAGA-AGTCTCTAA-GGTCAAAGCCGA
* * *
1533229 CAAGTAGACTAAAGCTAAGG
64 CAGGCAGACTAAAGGTAAGG
* *** * *
1533249 AAGTCT-CAA-GTCTTAAAGTCGACAAAAAGACTAAAGGTAAAAAAATCTAC-AAGGTCAAA-CC
1 AAGTCTCCAAGGTC--AAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCT-CTAAGGTCAAAGCC
*** * * *
1533310 TGACATATAGACAAAAGTTAAGA
62 -GACAGGCAGACTAAAGGTAAGG
* * * * * * * *
1533333 AAGTCTCCAAGGTCAAAGCTGATATGAAAACTAAAGGTAAAGAAGTAT-TTAGAGTCAAAGTCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCGA
* *
1533397 CATGTAGACTAAAGGTAAGG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * **
1533417 AAGTTTCCTAA-GTCAAAGTCAACAGGTAGACTAAAGGTAAGGAAATCTCTAAGGTCAAAGGTGA
1 AAGTCTCC-AAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * ** *
1533481 CATGCAGACAAAAATTAAGA
64 CAGGCAGACTAAAGGTAAGG
* ** * * * * * *
1533501 AACTCTCCAAGGTCAAAGTTGATAGGAAAACAAAAGATAAAGAAGTCT-TTAGAGTCAAAGTCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCGA
* * *
1533565 CATGTAGACTAAAGGTAAAG
64 CAGGCAGACTAAAGGTAAGG
* * * * * *
1533585 AAGTTTCCTAGGTCAAAGCCGACAGGTAGACTAAAGGTAAGGAAGTTTCTAAGGTCAAAGTCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
*
1533650 AGGCAGACTAAAGACTAAGGGTAAGA
65 AGGCAGACT----A--AA-GGTAAGG
* ** * * * * * *
1533676 AAGTCTCCAGGGTCAAAGCCGA-A-AAAAATTAAGGGTAATGAAGTTTCCAAGGTCAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * *
1533739 AAGCAGACTAAGGGCAAGA
65 AGGCAGACTAAAGGTAAGG
* * * * * * *
1533758 AAGTCTCTAGGGTCAAAGTCGATAGGAAAACTAAGGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1533823 AAGCAGACTAAAGGTGAGG
65 AGGCAGACTAAAGGTAAGG
* * * * * *
1533842 AAGTCTCTAAGGTCAAAGCTGATAGGTTGACTACAGGTAAGGGTAAAGAAGTCTCCAAGGTCAAA
1 AAGTCTCCAAGGTCAAAGCCGACAGG--CA-GACA---AA-GGTAAAGAAGTCTCTAAGGTCAAA
* * *
1533907 GCCGAGAGGCAAACTAAAGGTTAA-A
59 GCCGACAGGCAGACTAAAGG-TAAGG
* * * * * * * * * *
1533932 AAGTCTCCAAAGTTAAAGTCGATAAGCAGACTAAGGTAAAAAAGTCTCCAGGGTCAAAACCGACA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACA
* * *
1533997 AGCAGAC-AAACGATAAAG
66 GGCAGACTAAA-GGTAAGG
* * *
1534015 AAGTCTCCTAGGTCAAAGCGGACTA-GCAGACTAAAGGT-ATGAAAGTCTCT-AGTGTCAAAGCC
1 AAGTCTCCAAGGTCAAAGCCGAC-AGGCAGAC-AAAGGTAAAG-AAGTCTCTAAG-GTCAAAGCC
* * * * * *
1534077 GACAAGTAAACAAAAAGTATGG
62 GACAGGCAGACTAAAGGTAAGG
* * * * * * * * *
1534099 AAGTCTCCACGGTCAAAGCCAACAAGCAGACTAAAGGGAAGGAAGTTTCCAAGGTCAAAGCTGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1534164 AGGCAAACTAAAGGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * * * * * * * *
1534183 AAGTCTCTAGGGTCAAAGTCGATAAGCAGACTAAGGGTAAAGAAGTTTCCAAGGTCAAAGTCAAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1534248 AAGTAGACTAAAGGTAAGG
65 AGGCAGACTAAAGGTAAGG
* * * * *
1534267 AAGTCTCC-AGGTCTAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCCAATGTCAAAGCTGA
1 AAGTCTCCAAGGTC-AAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * *
1534331 CAAGCAGACTAAAGATAAAG
64 CAGGCAGACTAAAGGTAAGG
* * * * * * *
1534351 AAAT-TTCTAGGCTCAAAGCCGATAGGCA-ATCTAAGGGTAAAGAAGTCTC-CAGAGTCAAAGCT
1 AAGTCTCCAAGG-TCAAAGCCGACAGGCAGA-C-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGCC
* *
1534413 GACAAGCAGACTAAAGATTAAGGG
62 GACAGGCAGACTAAAG-GTAA-GG
* * * * * *
1534437 TAAAAAAGTCAT-TAAGGTCAATA-CCGATAGGCAAACTAATGGTAAAAAAGTTTC-AAGGTCAA
1 -----AAGTC-TCCAAGGTCAA-AGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAA
* * *
1534499 AGCTGACAAGCAAACTAAAGGTAAGG
58 AGCCGACAGGCAGACTAAAGGTAAGG
* * ** * * * *
1534525 AAGTCTCAAAGGCCAAAGTTGACAGACAGACTAAGGGTAAAGAAGTCTCTAAGGTTAAAGCGGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * **
1534590 AAGCAAACTGAAGGTAAAT
65 AGGCAGACTAAAGGTAAGG
* ** ** * * * * *
1534609 AAGTCTCTAAGGTCAAAGTTGACAAACGGACTAAGGGTAAAGAAGTCTCGAAGGTCAAAGCTGAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* *
1534674 AGGTAGACTAAAGGTAACG
65 AGGCAGACTAAAGGTAAGG
* ** * * ** * * * *
1534693 AAGTCTCGAAGGTCAAAGTGGATAGGCATATCAAAGGTATGGAAGTCTCCAGGGTCAAAGCTGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * *
1534758 AGGCAAAATAAAGGTAAAG
65 AGGCAGACTAAAGGTAAGG
* * * ** * * * *
1534777 ACA-TCTCC-AGGTTAAAACCGATAAGAAAACTACAAGTAAGGGAAAAAAAGTCTC-AAGGTTAA
1 A-AGTCTCCAAGGTCAAAGCCGA-CAG-GCA-GAC-A--AA-GGTAAAGAAGTCTCTAAGGTCAA
* * **
1534839 AGACGACAGGTAGACTAAAGGTAAAA
58 AGCCGACAGGCAGACTAAAGGTAAGG
* * * * * * *
1534865 AACTCT-CTAGGATCAAAGCCAATAGGCAGACTATA-GTAAGGAAGTCTCTAAGGTCAAAGTCGA
1 AAGTCTCCAAGG-TCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * *
1534928 TAGGCAGGCTAAAGATAAAG
64 CAGGCAGACTAAAGGTAAGG
* * * * * *
1534948 AAGTCTCCAAGGTCAAAGCCAAAAAGCAGACTAAAGGTAAGGAACTCTCTAAGGTCAAAGCTGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
** * * * *
1535013 AAACATATTAAGGGTAA-A
65 AGGCAGACTAAAGGTAAGG
* ** * * * *
1535031 ATAATCTTTAGGGTTAAAGCCGACAGGCAGACTAAAAGT-AAGTAAGTCT-TCAAGGTCAAAGCT
1 A-AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCT-AAGGTCAAAGCC
* * * *
1535094 GACAGACAGATTAAAAGTAAGA
62 GACAGGCAGACTAAAGGTAAGG
* * * * * * * * *
1535116 AAGTCTTCAGGGTCAAAGCTGACA-ACTAGACAAAAAGTAAAAAAGTCTTTAGGGTCAAAGCTGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGC-AGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * *
1535180 CA-GCTAGACAAAAAGTAAAG
64 CAGGC-AGACTAAAGGTAAGG
* * * ** * * * *
1535200 AAGTCTTCAGGGTTAAAGCTAACAGGCTA-CCTAAAGGTAAAGAAGTTTCCAAGGTTAAAGCCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGC-AGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
* * * *
1535264 TAGGTAAACTAAAGGTAAAG
64 CAGGCAGACTAAAGGTAAGG
* * *
1535284 AAGTCTCCAAGG-CTAAAGTCGACAGGTAGACTAAAGACTAAGGGTTAGAAAGTCTCT-AGAGTC
1 AAGTCTCCAAGGTC-AAAGCCGACAGGCAGAC-AAAG-GTAA-----AG-AAGTCTCTAAG-GTC
* * * * *
1535347 AAAGCCGATAGACCGA-TAAAGGGCAAAG
56 AAAGCCGACAGGCAGACTAAA-GGTAAGG
* ** * * * ** * * *
1535375 AAGTCTCCAAGGTCAATGTTGACAAGCAGATAAAAG-ATAAGAAAACCTCCAAAGTCAAAGCGGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGGTA-AAG-AAGTCTCTAAGGTCAAAGCCGA
* * * **
1535439 CAAGCAAACTATAGGTAAAA
64 CAGGCAGACTAAAGGTAAGG
* * * * * * * * *
1535459 AAGTCTCCAAGGTGAAAGCCAACTA-GTAGACTAAGGGTGAGGGAGACTCCAAGGTCAAAGCCGA
1 AAGTCTCCAAGGTCAAAGCCGAC-AGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGA
*
1535523 CAGGCAGACTACAGGTCAGGGTAAGA
64 CAGGCAGACTA-A----A-GGTAAGG
* * * * * * * *
1535549 AAGTCTCCAAGGTTAAAGTCGACAGGTAGACTCAAGGTAAAAAAGTCTCTAAAGTCAAAACCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * * *
1535614 AAGTAAACT-ATGGTAAAG
65 AGGCAGACTAAAGGTAAGG
** * * * * * *
1535632 AAGTCTCCATTGCCAAAGCCGATAGGCAGACTAAAGATAAAAAAGTCTCCAAGGTCAAAGCGGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGAC
* * * *
1535697 AAGTAGACTATAGGTAA-A
65 AGGCAGACTAAAGGTAAGG
* * * * * * * *
1535715 AATGCCTCTATA-ATCAAAAG-CAACAAGTAGACTAAGGGTAAAGAAGTCTCT-TGAGTCAAAGC
1 AA-GTCTCCA-AGGTC-AAAGCCGACAGGCAGAC-AAAGGTAAAGAAGTCTCTAAG-GTCAAAGC
* * * *
1535777 TGACAGGCAAACTAAGGGTAA-A
61 CGACAGGCAGACTAAAGGTAAGG
* * *
1535799 ATAGTCTCCAAGTTCAAAGCTGACAGGCAGACTAAAGGT-AAGAAAGTCTCCAAGGTCAAAG
1 A-AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-AAAGGTAAAG-AAGTCTCTAAGGTCAAAG
1535860 TTGATAAACA
Statistics
Matches: 8614, Mismatches: 2300, Indels: 958
0.73 0.19 0.08
Matches are distributed among these distances:
77 2 0.00
78 47 0.01
79 3 0.00
81 73 0.01
82 221 0.03
83 2044 0.24
84 4682 0.54
85 250 0.03
86 27 0.00
87 18 0.00
88 63 0.01
89 248 0.03
90 501 0.06
91 421 0.05
92 13 0.00
93 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (83 bp):
AAGTCTCCAAGGTCAAAGCCGACAGGCAGACAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACA
GGCAGACTAAAGGTAAGG
Found at i:1524585 original size:131 final size:131
Alignment explanation
Indices: 1524420--1524786 Score: 333
Period size: 131 Copynumber: 2.8 Consensus size: 131
1524410 AGACAAAGGG
* * * *
1524420 TAAAGAAGTCTCTAAGGTCAAAGCCGACAAGTAGACTAAAA-TTAAGAAAGTCTCC-AAGGTTAA
1 TAAAGAAGTCTCCAAAGTCAAAGCCAACAAGTAGACTAAAAGTAAAG-AAGTC-CCTAAGGTTAA
* * * *
1524483 AGCTAACAGGCACACTAAAGCTTAGGAAGTC-CCAAGGTCAAAGCCGATAGGCAAACTACAGGTA
64 AGCCAACAGGCACACT-AAGCTAAAGAAGTCTCCAAGGTCAAAGCCAATAGGCAAACTACAGGTA
1524547 AGAT
128 AGAT
* * *
1524551 TAAAGAAGTCTCCAAAGTCAAAGCCAACAGGTAGACTAAAGGTAAAGAAGTCCCTAGGGTTAAAG
1 TAAAGAAGTCTCCAAAGTCAAAGCCAACAAGTAGACTAAAAGTAAAGAAGTCCCTAAGGTTAAAG
* * * * *
1524616 CCGACAGGCAGACTAAGGTAAAGAAGTCTCCAAGGTCAAAGCCAATAGGTAGACT--A---AAGA
66 CCAACAGGCACACTAAGCTAAAGAAGTCTCCAAGGTCAAAGCCAATAGGCAAACTACAGGTAAGA
1524676 -
131 T
* * * * * * * * * *
1524676 TAAAAAAGTCTCCAAGGTCAAAG-CAGACAAGCAGACTAAAGGTAAAAAAATCTCAAAAGTCAAA
1 TAAAGAAGTCTCCAAAGTCAAAGCCA-ACAAGTAGACTAAAAGTAAAGAAGTCCCTAAGGTTAAA
* * * *
1524740 GTCAACAAGCAGACTAAGGGT-AAGAAAGTCTCCAAGGTCAAAGCCAA
65 GCCAACAGGCACACTAA-GCTAAAG-AAGTCTCCAAGGTCAAAGCCAA
1524787 CAAGCAGACT
Statistics
Matches: 200, Mismatches: 30, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
124 2 0.01
125 67 0.34
126 29 0.14
129 1 0.00
130 13 0.06
131 84 0.42
132 4 0.02
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.16
Consensus pattern (131 bp):
TAAAGAAGTCTCCAAAGTCAAAGCCAACAAGTAGACTAAAAGTAAAGAAGTCCCTAAGGTTAAAG
CCAACAGGCACACTAAGCTAAAGAAGTCTCCAAGGTCAAAGCCAATAGGCAAACTACAGGTAAGA
T
Found at i:1524928 original size:209 final size:210
Alignment explanation
Indices: 1524383--1535008 Score: 2135
Period size: 209 Copynumber: 50.3 Consensus size: 210
1524373 AAAGGTACAA
* * * ** * * *
1524383 AAGTCTCTAGGGTTAAAGCCGACGGGGAGACAAAGGGTAA-AGAAGTCTCTAAGGTCAAAGCCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCAA
* ** * * * * *
1524447 CAAGTAGACTAAA-ATTAAGAAAGTCTCCAAGGTTAAAGCTAACAGGCACACTAAAGCTTAGGAA
65 CAGGTAGACTAAAGAAAAAG-AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAA
* * * * * *
1524511 GTC-CCAAGGTCAAAGCCGATAGGCAAACTACAGGTAAGATTAAAGAAGTCTCCAAAGTCAAAGC
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAG------GAAGTCTCCAAGGTCAAAGC
* * * *
1524575 CAACAGGTAGACTAAAGGTAAAG
188 CAACAAGCAGACTAAGGGTAAGG
* * * *
1524598 AAGTC-CCTAGGGTTAAAGCCGACAGGCAGACTAA-GGTAA-AGAAGTCTCCAAGGTCAAAGCCA
1 AAGTCTCC-AGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCA
* * * **
1524660 ATAGGTAGACTAAAGATAAAA-AAGTCTCCAAGGTCAAAGCAGACAAGCAGACTAAAGGTAAAAA
64 ACAGGTAGACTAAAGA-AAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* * * * * * *
1524724 AATCTCAAAAGTCAAAGTCAACAAGCAGACTAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCAACA
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACA
1524789 AGCAGACTAAGGGTAAGG
193 AGCAGACTAAGGGTAAGG
* * * * * *
1524807 AAGTCTCCAGGGTCAAAGTCAATAGACAAAGTAAGGGTAA-AATAGTCTCTAGGGTCAAAGCCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAA-AGTCTCTAAGGTCAAAGCCAA
* * * * *
1524871 TAGGCT-GACTAAAGAAAAAGAAGTCTCCAAGGTCAAAACCGA-TGGCAGACAAAAGGTAAGGAA
65 CAGG-TAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAA
* * * * * * *
1524934 GTCTTTAAGGTCAAAACTGATAGGCAGACTAAAGATAAGGAATTCTCCAAGGTCAAAG-CAGACA
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCA-ACA
* **
1524998 TGCAGACTAAGGGTAAAAA
193 AGCAGACTAAGGGT-AAGG
** ** * * *
1525017 AAGTCTTTAGGGTCAAAGCTGATAGGCAGACTAAGGATAAAAAAGTCT-TCAAGGTCAAAGCCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCT-AAGGTCAAAGCCAA
* * * ** *
1525081 CAGGCAGACTAAAGGTAAAA-AAGTCT-CTAGAGTCAAAGCCAACAGGCAGAGT-AAGGTAAGGA
65 CAGGTAGACTAAA-GAAAAAGAAGTCTCCAAG-GTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* * * * * * ** *
1525143 AGTCTCAAAAATCAAAGCCGACAGGCAAACTAAAGATAAAGAAGTCTCTAAGGTCAAAGCGGAGA
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACA
**
1525208 AGCAGACTAAGGGTAAAA
193 AGCAGACTAAGGGTAAGG
* * * * * * * * * * *
1525226 AAATGTTCAAGATCAAAGCCAACAAGAAGACTAAGGGTAAGCAAGTCT-TCAAGGTCAAAGTCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCT-AAGGTCAAAGCCAA
* ** * *** * *
1525290 CAGGTAGACTACAGGTAAGGAAGTCTCTGGGGTC-AAGCTGACAGGCAGACAAAAAGTAAGGAAG
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * * * * * *
1525354 TCTCTAAAGTCAAAACCGACAGGTAGACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGCTAACAGG
130 TCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAG
* * *
1525419 GAAACTAAAGGTAAGG
195 CAGACTAAGGGTAAGG
* * ** * * * *
1525435 AAGTCTCCATGGTTAAAGTAAACAGGTAGACTAAGGGTAAGCAAGTCTCTAGGGTCAAAGCCAAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * * * * *
1525500 AGGCAGACTAAGGGTAAAA-TAGTCTCTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAA
66 AGGTAGACTAA-AGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * * * * * * * *
1525564 TCTCCAACGTCAAAGCCAACACGTAGACTAAAGGTAAGGAAGTCTCTAAGGT-TAAGCCGACAGG
130 TCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAG
* * **
1525628 TAGACAAAAAGTAAGG
195 CAGACTAAGGGTAAGG
* * * * * * * * * *
1525644 AAGTCTCTATGGTAAAAGCCGATAGGCAGAC-AAAGTTAAGGAAGTCTCCAAAGTTAAAGCCAAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * * * **
1525708 AGGTAGACTAATG-ATAAGAAAGTCTCCAAGGTCAAAG-TAGACAGACAGAGTAAAGGTAAAAAA
66 AGGTAGACTAAAGAAAAAG-AAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGGAA
* * * * * * * * *
1525771 GTGTCTAAGGTGAAAGACAACAAGAAGACT-AAGTGTAAGGAAGTCTCCAGGGTCAAAGCCGAC-
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAG-GTAAGGAAGTCTCCAAGGTCAAAGCCAACA
* *
1525834 AGACAAACTAATGGTAAGG
193 AG-CAGACTAAGGGTAAGG
* * * * * ** * * * *
1525853 AAGTCTCTAGGGT-TAAGCCGATAGGCAAACAAAAAGTAAGGAAGTCTCTAGGGTCAAAGCCGAT
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* ** * * * * * * *
1525917 AGG-CGAACTAAAGGTAAGGAAGTTTCTAAGGTCAAAACTGATAGACAAACTAAAGGTAAGGAAG
66 AGGTAG-ACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * * ** * * ** *
1525981 TTTCCAAGGTCAAAGTTGACAGGCAGACTAAGGGTAAGGAAGTCTCTAAGGTCAAAGCTGA-TAG
130 TCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAG
*
1526045 ACAGACTAAGGGTAA-A
195 -CAGACTAAGGGTAAGG
* * * * * *
1526061 ATAGTCTCTAGGGTCAAAGCCAACAAGCAAATTAAAGGTAA-AGAAGTCT-TCAAGGTCAAAGCC
1 A-AGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCT-AAGGTCAAAGCC
* ** * * * * * * * *
1526124 AATAGGTAGACTAAAGGTAAGGAAGTCTCTAGGGT-GAAGCTGACATGTAGACAAAAAGTAAGGA
63 AACAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* * * ** * * * ** *
1526188 AGTCTCCAAGGTCAAAGCCAACAGGCAGACTAAAGGTAAAAAAGTTTCTAGGGTCAAAGCTGATA
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACA
* * *
1526253 AGTAAACTAAAGGTAAGG
193 AGCAGACTAAGGGTAAGG
* * *** * * * **
1526271 AAGTCTCAAAGGTCAAAGTTGACACGCAGACTAAGGGTAAAGAAA-TCT-TCAGGGTCAAAGCTG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGT-AAGAAAGTCTCT-AAGGTCAAAGCCA
* * * * * ** * * * **
1526334 ATAGGCAGACTAAGGGTAAAA-TAG--T-CAAGGTCCGAGCTGATAGGCAAACTAAGGGTAATAA
64 ACAGGTAGACTAA-AGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* * ** * * * * *
1526395 AGTCTCCAAGGTCAAAGCTAACAAGTAGACTAAAGGTAAGGAAGTCT-CTAGAATC-AAGCCAAT
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAG-GTCAAAGCCAAC
** * ** *
1526458 TGGCAGACAAAAAGTAAAG
192 AAGCAGACTAAGGGTAAGG
* ** * * * * * **
1526477 AAGTCTCGAGGGTCAAAG-TGACAGGTAGACTAAAGGTAA-AGAAGTTTCCAAGGTCAAAGCTGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCAA
* * * * * * * * * *
1526540 CAGGCAAAGTAAA-AGTAAGGAAATCTCCATGGTTAAAG-TCGATAGGCAGACTAAAGAATAAAG
65 CAGGTAGACTAAAGA-AAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAG-GT-AAG
* * * * * * * * * * **
1526603 GTAAGAACATCTCCAAGGTCAAAGTCGATAAGTA-ATCTCAAGATAAAGAAGTTTTTAAGGTCAA
126 G-AAG----TCTCTAAAGTCAAAGCCGACAGGCAGA-CTAAAGGTAAGGAAGTCTCCAAGGTCAA
* ** * * * * *
1526667 TGCTGACAAGGAGCCTAAAGATAAAG
185 AGCCAACAAGCAGACTAAGGGTAAGG
* * ** *** * * * * **
1526693 AAGTTTTCAGGAACAAAGTTGATAGGCAGACTATGAGTAA-AGAAGTCTCCAGGGTCAAAGCTGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCAA
* * * * * * * * *
1526757 CAAGCAGACTAAAGGAAAATAAGTCCCCAGGGTTAAAG-TCGATAGGCAGACTAATGGTAAGGAA
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGGAA
* ** * * * ** * * * **
1526821 GTCTCCAGGGTCAAAGTCGACAAGTG-A-ACTAAAGGTAAAGAAGTTTATAGGGTTAAAACTGAC
129 GTCTCTAAAGTCAAAGCCGAC-AG-GCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
** * *
1526884 GGGCAAACTAAAGGTAAGG
192 AAGCAGACTAAGGGTAAGG
* * ** * * * * * *
1526903 AAGTCTACCA-AGTCAAAGTCGGTAGGTAGCCTAAAGGTAAGGAAGTCTCAAAGGTTAAAGCC-A
1 AAGTCT-CCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAA
** * * * *** * *
1526966 CAGACAAACTATAGGTAAGGGTAAAGAAGTCTCCAGGGTCAAAGCTGACAAAAAAACTAAAAGTA
65 CAGGTAGACTA-AAG-AA----AAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTA
** * ** * ***
1527031 AAAAAGTCTCT-AGGATCAAAGCTAACAAGCAGACT-AAGGTAAGGAAGTCTCCAAGGTCAACTT
124 AGGAAGTCTCTAAAG-TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGC
* * * * * * *
1527094 CGATAGGTAGACTAAAGATAAGA
188 CAACAAGCAGACTAAGGGTAAGG
* * ** *** * * * * *
1527117 AAATCTCTAACGTCAAAGTGGACAAGCAGACTAAAGGTAAAAAAGTGTCTAAGGTCAAAGCCAAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * * ** * * *
1527182 AAGAAGACTAAGGGTAAGGAAGTCTCCAAGG-CTAAAGCTGACAGGTAGACTAAAGGTGAGGAAG
66 AGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTC-AAAGCTGACAGGCAGACTAAAGGTAAGGAAG
** * * * * * ** * * * *
1527246 TCTCTAGGGTC-AAGTCGACAGGCTGACAAAAAGTAAAGAAGTCTTTAGGGCCAAAGCCGACAGG
130 TCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAG
* *
1527310 CAAACTAAAGGTAAGG
195 CAGACTAAGGGTAAGG
* * * * * * * * * * * * *
1527326 ATGAT-TTCAAGGTCAAA-CCTGACAAGAAAACTAAAGGTAAGGAAGTCTCTAGGGTCAAAGTCG
1 AAG-TCTCCAGGGTCAAAGCC-AATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCA
* * * ** * * * * * *
1527389 ATAGGAAGATTGAGGGTAAAATG--GTCTATC-GGGTCAAAGATGATAGGAAGACTAAAGGTAAG
64 ACAGGTAGACT-AAAG-AAAAAGAAGTCT-CCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAG
* * ** * *** * *
1527451 GAAGTCTCCAAGGTCAAA-TTGA-TGAGCAGACTAAAGGTAAGGAAGTCTCTTGGGTC-AAGTCG
126 GAAGTCTCTAAAGTCAAAGCCGACAG-GCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCA
* * * *** *
1527513 ACAGGTAGACAAATAATAA-A
190 ACAAGCAGACTAAGGGTAAGG
* ** ** * * * * * **
1527533 AGAGTCTCCAAGGTCAAAGCTGATAGGCAGACTAAAAGTATGGAAGTTTCCAAGGTTAAAGCTGA
1 A-AGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAA
* * * ** * * * * * *
1527598 TAGGCAAACTAAAGGTAAGGAAGCCTCAAAGGTC-AAGGTCGAGACGG-AGACTAAAGGTAAAGA
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCT-GACA-GGCAGACTAAAGGTAAGGA
* * * * *
1527661 AGTCTCTAAGGTTAAAGCCAACAAGCAGACTAAAGGT-AGTGAAGTCT-CAAGGGTCCAAGCCAA
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAG-GAAGTCTCCAA-GGTCAAAGCCAA
*
1527724 -AAGGCAG-CTTGAA-GGTAAAG
191 CAA-GCAGAC-T-AAGGGTAAGG
* ** * ** * * * * * *
1527744 AAGTCTCTAAAGT-TAAGCCGGTAGGTAGA-TAAAAAGTTAA-AAAGTCTCTAGGGTCAAAGTCG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACT--AAGGGTAAGAAAGTCTCTAAGGTCAAAGCCA
* * * ** * * * * *
1527806 ACAAGCAGACAAAAGGTAAGGAAGTCT-CAGGGGTCAAAGCTAACAAGCAAACTAAAGGT-AGGA
64 ACAGGTAGACTAAAGAAAAAGAAGTCTCCA-AGGTCAAAGCTGACAGGCAGACTAAAGGTAAGG-
* * * * * * *
1527869 AAGTCTCCAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAGGAAGTCTCCAAGGTTAAAGCCAAT
127 AAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
* * ** *
1527934 AGGTAGACTCTGGGTAA-T
192 AAGCAGACTAAGGGTAAGG
* * * * * * **
1527952 ATAGTCTCCAAGGTCCAAA-CCGATAGGAAAACTAAAGGTAAGGAAGTCTCTAAGGTCAAAGCTG
1 A-AGTCTCCAGGGT-CAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCA
* * ** * * * *
1528016 ATAGGCAGACTAAAGGTAAGGAAGTCTCTAGGGTC-AAG-TCGACAGGCAGAC-AAGAAGTAAGG
64 ACAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAA-AGGTAAGG
* * * * * * * ***
1528078 AAATCTCCAAGGTCAAAGCCGATAGGCAGACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGTTGAC
127 AAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
* * *
1528143 AAGTAAACTAAAGGTAAGG
192 AAGCAGACTAAGGGTAAGG
* ** * * * ** * * * * *
1528162 AAGTCTCTAGGGTCAAATTCGACAGGCATACTAAAAGTAAGGAAGTCTCCAAGGTGAAAGGCGAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
*** * * * * * * *
1528227 AAACAAACTAAAGGTAAAA-AAGTGTCCAGGGTTAAA-CCGACA-ACTAGACTAAAGGTAAGGAA
66 AGGTAGACTAAA-GAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGC-AGACTAAAGGTAAGGAA
* * * * * * * * * * * *
1528289 GTCTCTTAGGTC-AAGCTGATAGG-AAAATAAAAAGTAAGAAAGTCGT-TAGGGTCAAAGCCGAT
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACT-AAAGGTAAGGAAGTC-TCCAAGGTCAAAGCCAAC
* *
1528351 AAGCAGACTAAAGGTAAAG
192 AAGCAGACTAAGGGTAAGG
* * * * * * * * * * * *
1528370 AAGTTTCTAAGGTCAAAGTCGACAAGCAAAGTAAAGGTAAGAAAGTCTC-AAGGGTCAAAGTCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAA-GGTCAAAGCCAA
* * * ** * ** * *
1528434 TAGGCAAACT-AAGTGTAAAGAAGTCTCTAAGGTCAAAGCCAATAGGCAGACTAAAGGTATGGAA
65 CAGGTAGACTAAAG-AAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAA
** * * * ** *** * *
1528498 GTCTCTAGTGTCAAAGTCGACAGGCAAACTAAAGGTAAGAAAGTCTCCTTGGTCAAAGTTGATAG
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAA
* *
1528563 GTAGACTAAAGGTAAGG
194 GCAGACTAAGGGTAAGG
* * *** * * ** * * * *
1528580 AAGTCTCCCGAGTCAAAGTTGACAGGCAAACTAAAAGTAAGGAAAAT-TCCAAGGTCAAAGTCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAA-GAAAGTCTCTAAGGTCAAAGCCAA
* * * * * * * ** *
1528644 TAAGCAGACTAAAGACTAAGGGTAAGAAAGTCTCTAAAGTC-AAGCCGATAGAAAGACTAAGGGT
65 CAGGTAGACTAAAGA--AA----AAG-AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGT
* * ** * *** * * *
1528708 AATGAAGTTTCCCATGTCAAAATTGACAAGCAGACTAAAGGTAGGGAAGTCTCCAAGGTCAAAGT
123 AAGGAAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGC
* * *
1528773 CGATAGGCAGACTAAGGGTAAGG
188 CAACAAGCAGACTAAGGGTAAGG
* * * * * * * * * *
1528796 AAGCCTCCAAGGCCAAAGCCAATAGGTAGACTAAAGGAAAGGAAGTTTCTAAGGTCAAAGTCGAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
** * *
1528861 AGACAGACTATAAGTAAGGGTAAAGAAGTCTCCAAGGTCAAAGCTGACAGGTAGACTTAAGGTAA
66 AGGTAGACTA-AAG-AA----AAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAA
** * * * * *** * * * * *
1528926 AAAAGTATCCAAGGTGAAAGTTAACAGGTAGACT-AAGGTAAGGAAGTCTACAAGGTTAAAACCG
125 GGAAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCA
* * *
1528990 ACACGCAAACTAAAGGTAAGG
190 ACAAGCAGACTAAGGGTAAGG
* * * * * * **
1529011 AAGTCTCCTA-GGTCAAAGACGATAGGTAGACTAAAGGTAAGGAAGTCTCTAAGGTCAAAACTGA
1 AAGTCTCC-AGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAA
* * ** * * * * * *
1529075 CA--AAGAACTTGAAGGTAAGGAAGTCT-CTAGAGT-TAAGCTGACAAGG-AGACAAAAAGTAAA
65 CAGGTAG-AC-TAAAGAAAAAGAAGTCTCCAAG-GTCAAAGCTGAC-AGGCAGACTAAAGGTAAG
* ** * * * *
1529135 GAAGTCTTTAGGGTCAAAGCCGATAGGCAGACTAAAGCTAAGGAAGTTTCCAAGGTCAAA-CCTG
126 GAAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCC-A
* * * * **
1529199 A-AAGATAAACTAAAGATAAAA
190 ACAAG-CAGACTAAGGGTAAGG
* **** * *
1529220 AAGTCTCCAAGGTCAAAATTGACAGGCAGACTAAGGGTAAGAAAGTCTC-AAGGGTCAAAGCTAA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAA-GGTCAAAGCCAA
* * * * * * * * *
1529284 TAAGTAGATTGAAGGTAAAA-TAGTCTCTAAGGTCAAAGCTGATAGGCGGACTAAAGGTAAGGAA
65 CAGGTAGACT-AAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAA
* * * * * * * *
1529348 GTCTC-AGAGGTCAAAGTCGATAGGTAGACTAAAGGTAAGGAAGTCTCTAGGGTC-AAGCCGATA
129 GTCTCTA-AAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACA
* * * ** **
1529411 GGCAAACAAAAAGTAAAA
193 AGCAGACTAAGGGTAAGG
* * * * * * ***
1529429 AAGTCTCTAGGGTCAAAGTCGATAGGGAGACTAAAGGTAA-AATAGTCTCCAAGGTCAAAGTTGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAA-AGTCTCTAAGGTCAAAGCCAA
* * * * * * * * * *
1529493 TAGGCACACTAAAGGTAAAA-AAGTCTCTAGGGTTAAAGGC-GACAAGCA-ATGTAAAGGTAATG
65 CAGGTAGACTAAA-GAAAAAGAAGTCTCCAAGGTCAAA-GCTGACAGGCAGA-CTAAAGGTAAGG
* * ** * * * ** * * *
1529555 AAATCTCCATGGTCAAAGTCGACATGCAGACAAAAGGTAAGGAAGTCTTTAGGGTC-AACCCGAC
127 AAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
* * ** *
1529619 AAGCAAACAAATAGTAAAG
192 AAGCAGACTAAGGGTAAGG
* ** * * * * * *
1529638 AAGTCTCCAAGGTCAAAGCTGACAGGAAAACTAAAGGTAA-AGAAGTCTCT-AGAGTCAAAGTCG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAG-GTCAAAGCCA
* ** * * * * * *
1529701 ACACGTAGACTAAAGGTAAGGAAGTCTCCAGGGACAAAG-TCGGCGGGTCGACTAAAGACTAAGG
64 ACAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCT-GAC-AG--G-C---AGACTAAAG
* ** * * ** * * * *
1529765 GTAAGAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACCAAGGGTAATGAAGTTTCCAAGGTCAAA
121 GTAAGGAAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAA
* *
1529830 GCCAACAAGCAGACTAAAGTTAAGG
186 GCCAACAAGCAGACTAAGGGTAAGG
* * * * * * * * * * *
1529855 AAGTTTCTAGGGTCAAAGTCAATAAGCAAATTAAGGTTAAGGAAGTCTCTAAGGTCAAAGTCGAT
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* ** * ** * *
1529920 AGGCAGACTAAAGGCAAAGAAGTCTCTAAGGTCAAAATTGATAGGCAAACTGCAGGTAAGGGTAA
66 AGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACT--A---AA-GGTAA
** * * * * * ** * * * *
1529985 AAAAGTCTTTAAGGTCAAAGCTGACACGTAGGTTAAAGTTAAGAAAGTCTCCAAAGTCAAAGCGA
125 GGAAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCA
* * *
1530050 ATAAGCACACTAAAGGTATA-G
190 ACAAGCAGACTAAGGGTA-AGG
* * * * * * * ** * * * * * * *
1530071 AAGTTTCTAGTGTCAAAGCCGACAGGTAGACAAAAAGTATGGAAGTTTCCAAGGTCAAAGTCGAT
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * ** * * * * * * * * *
1530136 AGGCAAACTAAAGGTAAGGAAATTTCTAGGGTCAAAGCTAATAGGAAAACTAAAGGTAAGGAAGT
66 AGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAGT
* * * * * ** * * *
1530201 CTC-CATGATCAAA-CTCAACAGGCAGAGTAAAGATTAAGGATAAGAGAGTCTTTAGGGACAAAA
131 CTCTAAAG-TCAAAGC-CGACAGGCAGACTAAAG-GTAA-G----GA-AGTCTCCAAGGTCAAAG
*** * * **
1530264 TTGATAGGCAGACTAAGGGTAAAA
187 CCAACAAGCAGACTAAGGGTAAGG
* * * * * * * * *
1530288 AAGTTTCCAAGGTCAAAGCTAACAAGCAGACTAAAGGTAAGGAAGTCTCTAAGG-CTAAAGTCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTC-AAAGCCAA
* * ** * * * * * * * * * * *
1530352 TAGGCAGACTAGGGATAAAGAAGTTTTCAAGGTCAAACCCGAGAAGCAAACTTAAGATAAAGAAG
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * ** * * * * *
1530417 TTTCT-AGGCTCAAAGTAGACAAGCAGA-TAAGGGTAAAGAAGTCT-CTAGAGTCAAAGCCGACA
130 TCTCTAAAG-TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAG-GTCAAAGCCAACA
* *
1530479 GGCAGACTAAAAATTAAGTGTAA-G
193 AGCAGAC-------TAAGGGTAAGG
** ** * * * * *
1530503 AAGTCTTTAGGGTCAAAATCGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGATCAAAGCCAAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * * ** * ** * * * *
1530568 AAGCAGACAAAAGGTAAGGAAGTCT-TTAGGGCTAAAG-TCAATAGGCAGACTAAGGGTAAGGAA
66 AGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTC-AAAGCT-GACAGGCAGACTAAAGGTAAGGAA
* * * * ** * * * * *
1530631 GTATCCAAGGTCAAAGCCGACAAGCAGACTAAACATAAAGAAGTTTCCAAGCTTAAAGCCGACAA
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAA
*
1530696 GCAGACTAAGGGTAAAG
194 GCAGACTAAGGGTAAGG
** *** *
1530713 AAGTCTCCAAAGTCAAAGCTGTCAGGCGGACTAAAGATTAAGGGTAAGAAAGTCT-TCAAGGTCA
1 AAGTCTCCAGGGTCAAAGC---CAATAGG-C---AGACTAAGGGTAAGAAAGTCTCT-AAGGTCA
* * * * * * ** * * ** * * ** *
1530777 ATGTCGATAGGCAAACTACGGGTAAAA-AAGTTTTTAAGGTTAAAGCCGACAAACACACTAAAGG
58 AAGCCAACAGGTAGACTA-AAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGG
* * * ** * * * **
1530841 TAAGGAAGCCTCTAAGGCCAAAGTTGACAGACAAACTAAGGGTAAAAAAGTCTCCAAGGTCAAAG
122 TAAGGAAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAG
**** * * *
1530906 TTGGCGAGCAAACTAAGGGTAAAG
187 CCAACAAGCAGACTAAGGGTAAGG
* * *** * * ** * ** * * * *
1530930 AATTTTCCAGCAACAAAGCCGACAAACAAACTAAAAGTAA-AGAAGCCTATAGGGTTAAA-CCAA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCAA
* * ** * * * *
1530993 CAGGCAAACTAAAGGTAAGGAAGTTTCGAAGGTCAAAGCTGACAAGCAGACTAAAGGTAAGGAAG
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * * * * * *
1531058 TCTCTAAGGTCTAAA-CTGACAAGCAGACTATAGGTAAGGGTAAAAAAGCCT-CAAGGTCATAGG
130 TCTCTAAAGTC-AAAGCCGACAGGCAGACTAAAGGTAA-GG-----AAGTCTCCAAGGTCAAAGC
* *
1531121 CGACAAGCAGACTAAGGGTAAAG
188 CAACAAGCAGACTAAGGGTAAGG
* ** * * * * * * * *
1531144 AAGTCTCCAAGGTCAAAGCTGACATGTAGACTAAAGGTAAAAAAGTCTCCAAGGCCAAAG--TAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * * * * ** * * *
1531207 ATGGCAAACTGAGGATAAAA-AAGTATGTAAGGTCAAAGCTAACGGGCAGACTAAAGGTATGGAA
66 A-GGTAGACTAAAGA-AAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAA
* * * * * * * * * * * *
1531271 GTCTCTAACGTCAAAGCCAATAGGCAGGCTAAAAGTAAAGAAGTCT-CTAGAGTTAAGGGCGATA
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAG-GTCAAAGCCAACA
* * *
1531335 GGCAGACTAAAGGTAAGA
193 AGCAGACTAAGGGTAAGG
* * * * * * **
1531353 AAGTCTCTAAGGTCAAAGCCGACAAGCAGACTAAAGAG-AATG-AAGTCTCTAAGGTCAAAGCTG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACT-AAGGGTAA-GAAAGTCTCTAAGGTCAAAGCCA
* * * * * * *
1531416 ACTGGTAGAATAAAGGTAAAA-AAGTCTCCAGGGTCAAAG-TCGACCGGTAGACTAAATGTAAGG
64 ACAGGTAGACTAAA-GAAAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGG
* * * * ** * *
1531479 AAGCCTCCAAGGTCAAAGTCGACA-GCTAGACTAAAGACTAAGACTAAAAAAGTCTACAAGG-CG
127 AAGTCTCTAAAGTCAAAGCCGACAGGC-AGACTAAAG-----G--TAAGGAAGTCTCCAAGGTCA
* * * * **
1531542 AAGCCGATAGGCAAACTAAGGGTAAAA
184 AAGCCAACAAGCAGACTAAGGGTAAGG
* * * * ** *** * ** * * ***
1531569 AATTTTCCAAGGTCAAAACTGATAATTTA-ACAAAACGTAAAAAAGTCTC-AAGGGCCAAAGTTG
1 AAGTCTCCAGGGTCAAAGCCAAT-AGGCAGACTAAGGGTAAGAAAGTCTCTAA-GGTCAAAGCCA
* * * ** * * * * *
1531632 ATAGGCA-AATAAAGGGTAAAGAAGTCTCCAAGGTCAAAGTTGAGAAGCAGACTAGAGGTAAAGA
64 ACAGGTAGACTAAA-GAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* * * * * * * *** **
1531696 AGTCTCCAAGGTTAAAGTCGACATGCAGACTAAGGGTAAAGAAGTCTCTTGGGTCAAAGCTGACA
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACA
* * * *
1531761 TGCAGACTAAAGGTATGA
193 AGCAGACTAAGGGTAAGG
** ** * ** * * * * *
1531779 AAGTCTCCAACGTCAAAGCTGACAGGCAGA-TAAAAAGTAAGGAAGTCACTAGGGTCAAAGTCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACT-AAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAA
* * * * * * *
1531843 TAGGCAGACTAAAGGTAAAAA-AA-TTTCCAGGGTCAAAGTTGACAGGCAAACTAAAGCTAAGGA
65 CAGGTAGACTAAA-G-AAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* ** * * * * * * * * * *
1531906 AGTCTCCAGGGTCAAAGTCGACAAGCATATTAGAA-GTAAAGAAGTCTCCAACGTGAAAACCGAT
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTA-AAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
* * * * *
1531970 AGGAAAACTAAAGGTAAGA
192 AAGCAGACTAAGGGTAAGG
* * * * * * * * * * *
1531989 AAGTGTCCATGGTCAAATCCGACAAGTAGACTAAAGCTACAG-AAGTCTCTAAGGT-TAAGCTAA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTA-AGAAAGTCTCTAAGGTCAAAGCCAA
* * ** * * ** * *
1532052 CAAGCAGA--AAA-AAATTAAGAAAGTCTTTAGGGTCAAAGCTGATAGGCAGACCGAGGGTAAAG
65 CAGGTAGACTAAAGAAA--AAG-AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGG
* * * * * ** ** ***
1532114 AAGT-TTTCCAGGTCAAAGCCAACAAGCAGACTAAAGGTAAAAAAGTCTTTAAGGT-AAAGGTTG
127 AAGTCTCT-AAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAA-GCCA
*
1532177 AC-AG-ATGGACTAA-GGTAAAG
190 ACAAGCA--GACTAAGGGTAAGG
** * * * * * *
1532197 AAGTCTTTAGGGTCAAAGTCGACAAGCAGACTAAAGGTATAG-AAGTCTCT-AGTGTCAAAGCCG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTA-AGAAAGTCTCTAAG-GTCAAAGCCA
* * ** * *
1532260 ATAGGCAGACTAAAG-GTAAGAAAGTCTCC-TGGTCAAAGCTGACAGGCAAACTAAAGGTAAGGA
64 ACAGGTAGACTAAAGAAAAAG-AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* ** * * * *
1532323 CGTCTCTAGGGTCAAAGTCGACACGCAGACTAAAGACTTAGGGCAAAAAAGTCTCCAAGGTCAAA
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAG--GTAAGG-----AAGTCTCCAAGGTCAAA
* * *
1532388 GCTGATAGAA--AGACTAAGGGTAATG
186 GC-CA-ACAAGCAGACTAAGGGTAAGG
* * * * * ** * * * * *
1532413 AAGTTTCCAAGGCCAAAGCCGACAAACAGACTAAGGGTAAGGAAGT-TTTCAATGTTAAAGTCAA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCT-AAGGTCAAAGCCAA
* * * * * * * *
1532477 CAGGCAGACTAAGGGTAATA-AAGTCTCTAAGGTCAAA-ATCGACAGGCAGAATAAAGGCAAGGA
65 CAGGTAGACTAA-AGAAAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGGA
* * * * * *
1532540 AGTCTCCAAGGTCAAAGCTGACTGGCAGACTATAGTTAAGGGTAAAGAAGTCTCCAAGGTTAAAG
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGAC--TA---AA-GGTAAGGAAGTCTCCAAGGTCAAAG
* * * * **
1532605 CCGATAAGTAGACTAAAGGTAAAA
187 CCAACAAGCAGACTAAGGGTAAGG
* * ** * * * * * * * * **
1532629 AAGTATCTAAAGTAAAAGTCGACAGGCAGACTAA-GATAAGGAAGTCTCCAAGGTCAAAACGGAC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* ** * * * ** * * * * * *
1532693 A-GTAAAACTAAAGGTAAGGAAGTC-CTAGGGTTGAAG-TCAACATGTACACCAAAGGTAAGGAT
66 AGGT-AGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGGAA
* * * *
1532755 GTCTCCT-AGGTCAAAACTGACA-GCTAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
129 GTCT-CTAAAGTCAAAGCCGACAGGC-AGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAAC
* * * * *
1532818 AGGTAGCCTAATGGTTAGG
192 AAGCAGACTAAGGGTAAGG
* *** * * * ** * * * * *
1532837 AAATCTGTTGGGTC---G---ACAGGGAGACAAAAAGTAAGGAAGTTTCTAGGGTC-ACGACCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAG-CCAA
* * * ** * * * * * * * * *
1532895 TAAGCAGACTAAAGGTAAGGGAGTTTCTATGGTCAAAGCTGAAAGGTAAACTAAAGGTAAAGAAG
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * * * * * * * *
1532960 TCTCTAAGGTCAAAGTCAACAGGCAGACTAAGGGTAAGGAAGTCT-CTAGGATTAAAGCCGATAG
130 TCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGG-TCAAAGCCAACAA
* * **
1533024 GTAGACTAAAGG-AAAA
194 GCAGACTAAGGGTAAGG
** * * * * * * *
1533040 ATAGTCTTTAGGGTCAAAGTCGATAGGAAGTCAAAAGGTAA-AGAAGTCTCAAAGGTCAAAGCCA
1 A-AGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCA
** * * * * * * * * ** *
1533104 ACAGGTAGACTAAAGGTAAGGAAGTCTCTAGGGTC-AAGCCGATAGGGAAACAAAAAATAAAGAA
64 ACAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAA
* * ** ** * * * * * **
1533168 GTATTTAGGGTCAAAGTTGACAGGAAGAC-AAGGGTAA-AATAGCCT-CAAGGGTCAAAACTGAC
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGA-AGTCTCCAA-GGTCAAAGCCAAC
* * *
1533230 AAGTAGACTAAAGCTAAGG
192 AAGCAGACTAAGGGTAAGG
* ** * * * * *** * * * *
1533249 AAGTCTCAAGTCTTAAAGTCGACAAAAAGACTAAAGGTAAAAAAATCTAC-AAGGTCAAA-CCTG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCT-CTAAGGTCAAAGCC-A
** * ** * * * * *
1533312 ACATATAGACAAAAG-TTAAGAAAGTCTCCAAGGTCAAAGCTGATATGAAAACTAAAGGTAAAGA
64 ACAGGTAGACTAAAGAAAAAG-AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGA
* * * * * * * *
1533376 AGTATTTAGAGTCAAAGTCGACATGTAGACTAAAGGTAAGGAAGTTTCCTAA-GTCAAAGTCAAC
128 AGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCC-AAGGTCAAAGCCAAC
* * *
1533440 AGGTAGACTAAAGGTAAGG
192 AAGCAGACTAAGGGTAAGG
* * * *** * * * *** * * *** *
1533459 AAATCTCTAAGGTCAAAGGTGACATGCAGACAAAAATTAAGAAACTCTCCAAGGTCAAAGTTGAT
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
* * * * ** * * *
1533524 AGGAAAACAAAAGATAAAGAAGTCT-TTAGAGTCAAAG-TCGACATGTAGACTAAAGGTAAAGAA
66 AGGTAGACTAAAGAAAAAGAAGTCTCCAAG-GTCAAAGCT-GACAGGCAGACTAAAGGTAAGGAA
* * * * * * *
1533587 GTTTCCT-AGGTCAAAGCCGACAGGTAGACTAAAGGTAAGGAAGTTTCTAAGGTCAAAGTCGACA
129 GTCT-CTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACA
*
1533651 GGCAGACTAAAGACTAAGGGTAAGA
193 ---AG-C---AGACTAAGGGTAAGG
* * * * * *
1533676 AAGTCTCCAGGGTCAAAGCCGAA-A--AAAATTAAGGGTAATG-AAGTTTCCAAGGTCAAAGCCG
1 AAGTCTCCAGGGTCAAAGCC-AATAGGCAGACTAAGGGTAA-GAAAGTCTCTAAGGTCAAAGCCA
* * *** * * * * * * *
1533737 ACAAGCAGACT-AAGGGCAAGAAAGTCTCTAGGGTCAAAG-TCGATAGGAAAACTAAGGGTAAAG
64 ACAGGTAGACTAAAGAAAAAG-AAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGG
* * * * *
1533800 AAGTCTCTAAGGTCAAAGCCGACAAGCAGACTAAAGGTGAGGAAGTCTCTAAGGTCAAAGCTGAT
127 AAGTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGC-CA-
*** * * *
1533865 AGGTTGACTACAGGTAAGGGTAAAG
190 A-CAAG-C-AGA-CTAAGGGTAAGG
* * * * * * * * * *
1533890 AAGTCTCCAAGGTCAAAGCCGAGAGGCAAACTAAAGGTTAA-AAAGTCTCCAAAGTTAAAGTCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACT-AAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAA
* * * * * * * * * * *
1533954 TAAGCAGACTAAGGTAAAA-AAGTCTCCAGGGTCAAAACCGACAAGCAGAC-AAACGATAAAGAA
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAA-GGTAAGGAA
* * * * * *
1534017 GTCTCCT-AGGTCAAAGCGGACTA-GCAGACTAAAGGTATGAAAGTCT-CTAGTGTCAAAGCCGA
129 GTCT-CTAAAGTCAAAGCCGAC-AGGCAGACTAAAGGTAAGGAAGTCTCCAAG-GTCAAAGCCAA
* * * ** *
1534079 CAAGTAAACAAAAAGTATGG
191 CAAGCAGACTAAGGGTAAGG
* * * * * * **
1534099 AAGTCTCCACGGTCAAAGCCAACAAGCAGACTAAAGGG-AAGGAAGTTTCCAAGGTCAAAGCTGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACT-AAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAA
* * * ** * * * * * *
1534163 TAGGCAAACTAAAGGTAAAGAAGTCTCTAGGGTCAAAG-TCGATAAGCAGACTAAGGGTAAAGAA
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTAAGGAA
* * * * * * * * * *
1534227 GTTTCCAAGGTCAAAGTCAACAAGTAGACTAAAGGTAAGGAAGTCTCC-AGGTCTAAAGTCGATA
129 GTCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTC-AAAGCCAACA
* * *
1534291 GGCAGACTAAAGGTAAAG
193 AGCAGACTAAGGGTAAGG
** ** * * * * * *
1534309 AAGTCTCCAATGTCAAAGCTGACAAGCAGACTAAAGATAAAGAAA-TTTCT-AGGCTCAAAGCCG
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGT-AAGAAAGTCTCTAAGG-TCAAAGCCA
* * * ** * *
1534372 ATAGGCA-ATCTAAGGGTAAAGAAGTCTCC-AGAGTCAAAGCTGACAAGCAGACTAAAGATTAAG
64 ACAGGTAGA-CTAAAGAAAAAGAAGTCTCCAAG-GTCAAAGCTGACAGGCAGACTAAAG-GTAA-
* * * * ** *
1534435 GGTAAAAAAGTCAT-TAAGGTCAATA-CCGATAGGCAAACTAATGGTAAAAAAGT-TTCAAGGTC
125 GG-----AAGTC-TCTAAAGTCAA-AGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTC
** * *
1534497 AAAGCTGACAAGCAAACTAAAGGTAAGG
183 AAAGCCAACAAGCAGACTAAGGGTAAGG
* * * *** * * * **
1534525 AAGTCTCAAAGGCCAAAGTTGACAGACAGACTAAGGGTAA-AGAAGTCTCTAAGGTTAAAGCGGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCAA
* * * * ** * * * ** * * *
1534589 CAAGCAAACTGAAGGTAAATAAGTCTCTAAGGTCAAAGTTGACAAACGGACTAAGGGTAAAGAAG
65 CAGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAG
* * * * * * * *** * *
1534654 TCTCGAAGGTCAAAGCTGAGAGGTAGACTAAAGGTAACGAAGTCTCGAAGGTCAAAGTGGATAGG
130 TCTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAG
* * *
1534719 CATA-TCAAAGGTATGG
195 CAGACT-AAGGGTAAGG
** * * * * * * * *
1534735 AAGTCTCCAGGGTCAAAGCTGATAGGCAAAATAAAGGTAAAGACA-TCTC-CAGGTTAAAACCGA
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGT-AAGAAAGTCTCTAAGGTCAAAGCCAA
* * * * * * *
1534798 TAAGAAAACTACAAGTAAGGGAAAAAAAGTCT-CAAGGTTAAAGAC-GACAGGTAGACTAAAGGT
65 CAGGTAGACTA-AAG--A---AAAAGAAGTCTCCAAGGTCAAAG-CTGACAGGCAGACTAAAGGT
** * * * * * *
1534861 AAAAAACTCTCT-AGGATCAAAGCCAATAGGCAGACTATA-GTAAGGAAGTCTCTAAGGTCAAAG
123 AAGGAAGTCTCTAAAG-TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAG
* * * * * * * *
1534924 TCGATAGGCAGGCTAAAGATAAAG
187 CCAACAAGCAGACTAAGGGTAAGG
* * * * * *
1534948 AAGTCTCCAAGGTCAAAGCCAAAAAGCAGACTAAAGGTAAGGAACTCTCTAAGGTCAAAGC
1 AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGC
1535009 TGACAAACAT
Statistics
Matches: 7807, Mismatches: 2143, Indels: 923
0.72 0.20 0.08
Matches are distributed among these distances:
202 12 0.00
203 46 0.01
204 100 0.01
205 45 0.01
206 48 0.01
207 100 0.01
208 760 0.10
209 2219 0.28
210 1579 0.20
211 103 0.01
212 19 0.00
213 101 0.01
214 474 0.06
215 661 0.08
216 883 0.11
217 629 0.08
218 19 0.00
219 2 0.00
220 1 0.00
221 3 0.00
222 2 0.00
223 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (210 bp):
AAGTCTCCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCAAC
AGGTAGACTAAAGAAAAAGAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAGT
CTCTAAAGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAGC
AGACTAAGGGTAAGG
Found at i:1526101 original size:543 final size:541
Alignment explanation
Indices: 1525074--1526226 Score: 1461
Period size: 543 Copynumber: 2.1 Consensus size: 541
1525064 TTCAAGGTCA
* * * ** **
1525074 AAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCTAGAGTCAAAGCCAACAGGCAGAGTAAGGTA
1 AAGCCGACAGGTAGACAAAAAGTAAGGAAGTCTCTAG-GTCAAAGCCAACAGGCAGACAAAGGTA
* *
1525139 AGGAAGTCTCAAAAATCAAAGCCGACAGGCAAACTAAAGATAAAGAAGTCTCTAAGGTCAAAGCG
65 AGGAAGTCTCAAAAATCAAAGCCAACAGGCAAACTAAAGATAAAGAAGTCTCCAAGGTCAAA-CG
* *
1525204 GAGAAGCAGACTAAGGGTAAAAAAATGTTCAAGATCAAAGCCAACAAGAAGACTAAGGGTAAGCA
129 GAGAAGCAGACTAAAGGTAAAAAAATGTTCAAGATCAAAGACAACAAGAAGACTAAGGGTAAGCA
* * ** * * *
1525269 AGTCTTCAAGGTCAAAGTCGACAGGTAGACTACAGGTAAGGAAGTCTCTGGGGTCAAGCTGACAG
194 AGTCTCCAAGGTCAAAGCCGACAGACAAACTACAGGTAAGGAAGTCTCTAGGGTCAAGCCGACAG
* *
1525334 GCAGACAAAAAGTAAGGAAGTCTCTAAAGTCAAAACCGACAGGTAGACTAAAGGTAAGGAAGTTT
259 GCAAACAAAAAGTAAGGAAGTCTCTAAAGTCAAAACCGACAGGGAGACTAAAGGTAAGGAAGTTT
* * ** * * *
1525399 CTAGGGTCAAAGCTAACAGGGAAACTAAAGGTAAGGAAGTCTCCATGGTTAAAGTAAACAGGTAG
324 CTAAGGTCAAAACTAACAGACAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGTAAACAGGCAG
* *
1525464 ACTAAGGGTAAGCAAGTCTCTAGGGTCAAAGCCAACAGGCAGACTAAGGGTAAAATAGTCTCTAA
389 ACTAAGGGTAAGCAAGTCTCTAAGGTCAAAGCCAACAGACAGACTAAGGGTAAAATAGTCTCTAA
** * * *
1525529 GGTCAAAGCTGACAGGCAGACTAAAGGTAAGGAAATCTCCAACGTCAAAGCCAACACGTAGACTA
454 GGTCAAAGCCAACAAGCAAACTAAAGGTAAAGAAATCTCCAACGTCAAAGCCAACACGTAGACTA
*
1525594 AAGGTAAGGAAGTCTCTAAGGTT
519 AAGGTAAGGAAGTCTCTAAGGTG
* * * *
1525617 AAGCCGACAGGTAGACAAAAAGTAAGGAAGTCTCTATGGTAAAAGCCGATAGGCAGACAAAGTTA
1 AAGCCGACAGGTAGACAAAAAGTAAGGAAGTCTCTA-GGTCAAAGCCAACAGGCAGACAAAGGTA
* * * * * *
1525682 AGGAAGTCTCCAAAGTTAAAGCCAACAGGTAGACTAATGAT-AAGAAAGTCTCCAAGGTCAAA-G
65 AGGAAGTCTCAAAAATCAAAGCCAACAGGCAAACTAAAGATAAAG-AAGTCTCCAAGGTCAAACG
* * * * * *
1525745 TAGACAGACAGAGTAAAGGTAAAAAAGTG-TCTAAGGTGAAAGACAACAAGAAGACTAAGTGTAA
129 GAGA-AG-CAGACTAAAGGTAAAAAAATGTTC-AAGATCAAAGACAACAAGAAGACTAAGGGTAA
* * *
1525809 GGAAGTCTCCAGGGTCAAAGCCGACAGACAAACTA-ATGGTAAGGAAGTCTCTAGGGTTAAGCCG
191 GCAAGTCTCCAAGGTCAAAGCCGACAGACAAACTACA-GGTAAGGAAGTCTCTAGGGTCAAGCCG
* ** * *
1525873 ATAGGCAAACAAAAAGTAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCGA-ACTAAAGGTAAGGA
255 ACAGGCAAACAAAAAGTAAGGAAGTCTCTAAAGTCAAAACCGACAGG-GAGACTAAAGGTAAGGA
* * * **
1525937 AGTTTCTAAGGTCAAAACTGATAGACAAACTAAAGGTAAGGAAGTTTCCAAGGTCAAAGTTGACA
319 AGTTTCTAAGGTCAAAACTAACAGACAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGTAAACA
* ** *
1526002 GGCAGACTAAGGGTAAGGAAGTCTCTAAGGTCAAAGCTGATAGACAGACTAAGGGTAAAATAGTC
384 GGCAGACTAAGGGTAAGCAAGTCTCTAAGGTCAAAGCCAACAGACAGACTAAGGGTAAAATAGTC
* * * * * * *
1526067 TCTAGGGTCAAAGCCAACAAGCAAATTAAAGGTAAAGAAGTCTTCAAGGTCAAAGCCAATAGGTA
449 TCTAAGGTCAAAGCCAACAAGCAAACTAAAGGTAAAGAAATCTCCAACGTCAAAGCCAACACGTA
*
1526132 GACTAAAGGTAAGGAAGTCTCTAGGGTG
514 GACTAAAGGTAAGGAAGTCTCTAAGGTG
* * *
1526160 AAGCTGACATGTAGACAAAAAGTAAGGAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTAAAGGT
1 AAGCCGACAGGTAGACAAAAAGTAAGGAAGTCT-CTAGGTCAAAGCCAACAGGCAGAC-AAAGGT
1526225 AA
64 AA
1526227 AAAAGTTTCT
Statistics
Matches: 518, Mismatches: 83, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
541 4 0.01
542 8 0.02
543 495 0.96
544 11 0.02
ACGTcount: A:0.42, C:0.16, G:0.26, T:0.17
Consensus pattern (541 bp):
AAGCCGACAGGTAGACAAAAAGTAAGGAAGTCTCTAGGTCAAAGCCAACAGGCAGACAAAGGTAA
GGAAGTCTCAAAAATCAAAGCCAACAGGCAAACTAAAGATAAAGAAGTCTCCAAGGTCAAACGGA
GAAGCAGACTAAAGGTAAAAAAATGTTCAAGATCAAAGACAACAAGAAGACTAAGGGTAAGCAAG
TCTCCAAGGTCAAAGCCGACAGACAAACTACAGGTAAGGAAGTCTCTAGGGTCAAGCCGACAGGC
AAACAAAAAGTAAGGAAGTCTCTAAAGTCAAAACCGACAGGGAGACTAAAGGTAAGGAAGTTTCT
AAGGTCAAAACTAACAGACAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGTAAACAGGCAGAC
TAAGGGTAAGCAAGTCTCTAAGGTCAAAGCCAACAGACAGACTAAGGGTAAAATAGTCTCTAAGG
TCAAAGCCAACAAGCAAACTAAAGGTAAAGAAATCTCCAACGTCAAAGCCAACACGTAGACTAAA
GGTAAGGAAGTCTCTAAGGTG
Found at i:1527361 original size:251 final size:248
Alignment explanation
Indices: 1524585--1535295 Score: 1592
Period size: 251 Copynumber: 42.3 Consensus size: 248
1524575 CAACAGGTAG
* * * * * * * *
1524585 ACTAAAGGTAA-AGAAGTCCCTAGGGTTAAAGCCGACAGGCAGACT-AAGGTAAAGAAGTCTCCA
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * * ** * *
1524648 AGGTCAAAGCCAATAGGTAGACTAAAGATAAAAAAGTCTCCAAGG-TCAAAGCAGACAAGCAGAC
65 AGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGAC
** * * * * * * * ** * *
1524712 TAAAGGTAAAAAAATCTCAAAAGTCAAAGTCAACAAGCAGACTAAGGGTAAGAAAGTCTCCAAGG
128 TAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTAGGG
* * * * * *
1524777 TCAAAGCCAACAAGCAGACTAAGGGTAAGGAAGTCTCCAGGGTCAAAG-TCA-ATAGACAA
191 TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACA-AG-CAA
* * * * * * ** * *
1524836 AGTAAGGGTAA-AATAGTCTCTAGGGTCAAAGCCGATAGGCTGACTAAA-GAAAAAGAAGTCTCC
1 ACTAAAGGTAAGAA-AGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAA-AAGTCTCT
* * ** * * ** *
1524899 AAGGTCAAAACCGA-TGGCAGACAAAAGGTAAGGAAGTCTTTAAGG-TCAAAACTGATAGGCAGA
64 AAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTC-AAACCGA-AGGCAGA
* * * * * * ** *
1524962 CTAAAGATAAGGAATTCTCCAAGGTCAAAG-CAGACATGCAGACTAAGGGTAAAAAAAGTCTTTA
127 CTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGT--AAAAAGTCTCTA
* * ** * * *
1525026 GGGTCAAAGCTGATAGGCAGACT-AAGGATAAAAAAGTCTTCAAGGTCAAAGCCGACAGGCAG
188 GGGTCAAAGCCGACAGGCAGACTAAAGG-TAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* * * * * * ** *
1525088 ACTAAAGGTAAAAAAGTCTCT-AGAGTCAAAGCCAACAGGCAGAGT-AAGGTAAGGAAGTCTCAA
1 ACTAAAGGTAAGAAAGTCTCTAAG-GTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
** * * * * * * *
1525151 AAATCAAAGCCGACAGGCAA-ACTAAAGATAAAGAAGTCTCTAAGG-TCAAAGCGGAGAAGCAGA
65 AGGTCAAAGCCAACAAG-AAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGA
* ** * * * * * * ** *
1525214 CTAAGGGTAAAAAAATGT-TC-AAGATCAAAGCCAACAAGAAGACTAAGGGTAAGCAAGTCT-TC
127 CTAAAGGT-AAGGAA-GTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCT-
* * * * * ** * *
1525276 AAGGTCAAAGTCGACAGGTAGACTACAGGTAAGGAAGTCTCTGGGGTC-AAGCTGACAGGCAG
187 AGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTC-AAGGTCAAAGCTGACAAGCAA
* * * * ** * * ** * *
1525338 ACAAAAAGTAAGGAAGTCTCTAAAGTCAAAACCGACAGGTAGACTAAAGGTAAGGAAGTTTCTAG
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
* * * * *** *
1525403 GGTCAAAGCTAACAGGGAA-ACTAAAGGTAAGGAAGTCTCCATGG-TTAAAGTAAACAGGTAGAC
66 GGTCAAAGCCAACA-AGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGAC
* * * * * * * ** *
1525466 TAAGGGTAAGCAAGTCTCTAGGGTCAAAGCCAACAGGCAGACTAAGGGTAAAATAGTCTCTAAGG
128 TAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAAAA-AGTCTCTAGGG
* * * * ** * * *
1525531 TCAAAGCTGACAGGCAGACTAAAGGTAAGGAAATCTCCAACGTCAAAGCCAACACGTAG
191 TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* * * * * * * ** *
1525590 ACTAAAGGTAAGGAAGTCTCTAAGGT-TAAGCCGACAGGTAGACAAAAAGTAAGGAAGTCTCTAT
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
* * * * * * * * * *
1525654 GGTAAAAGCCGATAGGCAGAC-AAAGTTAAGGAAGTCTCCAAAG-TTAAAGCCAACAGGTAGACT
66 GGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGACT
* * * * * ** ** * * *
1525717 AATGATAAGAAAGTCTCCAAGGTCAAAGTAGACAGACAGAGTAAAGGTAAAAAAGTGTCTAAGGT
129 AAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGT-AAAAAGTCTCTAGGGT
* * * * * * * *
1525782 GAAAGACAACAAGAAGACT-AAGTGTAAGGAAGTCTCCAGGGTCAAAGCCGAC-AGACAA
192 CAAAGCCGACAGGCAGACTAAAG-GTAAGGAAGT-TTCAAGGTCAAAGCTGACAAG-CAA
* * * * * * * * * **
1525840 ACTAATGGTAAGGAAGTCTCTAGGGT-TAAGCCGATAGGCAA-ACAAAAAGTAAGGAAGTCTCTA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAG-AAGACTAAAGGTAAAAAAGTCTCTA
* * * ** * * * * *
1525903 GGGTCAAAGCCGA-TAGGCGAACTAAAGGTAAGGAAGTTTCTAAGG-TCAAAACTGATAGACAAA
65 AGGTCAAAGCCAACAAGAAG-ACTAAAGGTAAGGAAGTCTCCAAGGCTC-AAACCGA-AGGCAGA
* * * * * ** * *
1525966 CTAAAGGTAAGGAAGTTTCCAAGGTCAAAGTTGACAGGCAGACTAAGGGTAAGGAAGTCTCTAAG
127 CTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTAGG
* * * * * * * **
1526031 GTCAAAGCTGATAGACAGACTAAGGGTAA-AATAGTCTCTAGGGTCAAAGCCAACAAGCAA
190 GTCAAAGCCGACAGGCAGACTAAAGGTAAGGA-AGTTTC-AAGGTCAAAGCTGACAAGCAA
* * * * * * **
1526091 ATTAAAGGTAA-AGAAGTCT-TCAAGGTCAAAGCCAATAGGTAGACTAAAGGTAAGGAAGTCTCT
1 ACTAAAGGTAAGA-AAGTCTCT-AAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCT
* * ** * * * * *
1526154 AGGGT-GAAGCTGACATGTAGACAAAAAGTAAGGAAGTCTCCAAGG-TCAAAGCCAACAGGCAGA
64 AAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGA
** * * * * * * * * * *
1526217 CTAAAGGTAAAAAAGTTTCTAGGGTCAAAG-CTGATAAGTAAACTAAAGGTAAGGAAGTCTCAAA
127 CTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGTAA-AAAGTCTCTAG
** * * * * * * * *
1526281 GGTCAAAGTTGACACGCAGACTAAGGGTAAAGAAATCTTCAGGGTCAAAGCTGATAGGCAG
189 GGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* ** * * * *
1526342 ACTAAGGGTAA-AATAG--TC-AAGGTCCGAG-CTGATAGGCAA-ACTAAGGGTAATAAAGTCTC
1 ACTAAAGGTAAGAA-AGTCTCTAAGGTCAAAGTC-GACAAG-AAGACTAAAGGTAAAAAAGTCTC
* * * * ** *
1526401 CAAGGTCAAAGCTAACAAGTAGACTAAAGGTAAGGAAGTCT-CTAGAATCAAGCC-AATTGGCAG
63 TAAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAACCGAA--GGCAG
* * * * * * * * * *
1526464 ACAAAAAGTAAAGAAGTCTCGAGGGTCAAAGT-GACAGGTAGACTAAAGGTAAAGAAGTTTCCAA
126 ACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAAA-AAGTCTCTAG
* * * * * * * * *
1526528 GGTCAAAGCTGACAGGCAAAGTAAAAGTAAGGAAATCTCCATGGTTAAAG-TCGATAGGCAGACT
189 GGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCT-GACA---AG-C-
1526592 AAA
247 -AA
* * * * * * * * *
1526595 GAATAAAGGTAAGAACA-TCTCCAAGGTCAAAGTCGATAAGTAA-TCTCAAGATAAAGAAGTTTT
1 -ACTAAAGGTAAGAA-AGTCTCTAAGGTCAAAGTCGACAAG-AAGACTAAAGGTAAAAAAGTCTC
* ** * * * * * * ** **
1526658 TAAGGTCAATGCTGACAAGGAGCCTAAAGATAAAGAAGTTTTC-AGGAACAAAGTTGATAGGCAG
63 TAAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAG
* * * * * * * * * * *
1526722 ACT-ATGAGTAAAGAAGTCTCCAGGGTCAAAG-CTGACAAGCAGACTAAAGGAAAATAAGTCCCC
126 ACTAAAG-GTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGTAAA-AAGTCTCT
* * * * * * **
1526785 AGGGTTAAAGTCGATAGGCAGACTAATGGTAAGGAAGTCTCCAGGGTCAAAG-TCGACAAGTGA
187 AGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCT-GACAAGCAA
* * * * * ** **
1526848 ACTAAAGGTAA-AGAAGTTTATAGGGTTAAA-ACTGACGGGCAA-ACTAAAGGTAAGGAAGTCTA
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTC-GACAAG-AAGACTAAAGGTAAAAAAGTCT-
* * *** * * * * * *
1526910 CCAA-GTCAAAGTCGGTAGGTAGCCTAAAGGTAAGGAAGTCTCAAAGG-TTAAAGCC-ACAGACA
62 CTAAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCA
* * * * *** * *
1526972 AACTATAGGTAAGGGTAAAGAAGTCTCCAGGGTCAAAG-CTGACAAAAAAACTAAAAGTAAAAAA
125 GAC--TA---AA-GGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGT-AAAAA
* ** * * *
1527036 GTCTCTAGGATCAAAGCTAACAAGCAGACT-AAGGTAAGGAAGTCTCCAAGGTC-AA-CTTCGAT
181 GTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGC-T-GAC
* * *
1527098 AGGTAG
243 AAGCAA
* * * * * *
1527104 ACTAAAGATAAGAAAATCTCTAACGTCAAAGTGGACAAGCAGACTAAAGGTAAAAAAGTGTCTAA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
* * *
1527169 GGTCAAAGCCAACAAGAAGACTAAGGGTAAGGAAGTCTCCAAGGCT-AAAGCTGACAGGTAGACT
66 GGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGACT
* * * *
1527233 AAAGGTGAGGAAGTCTCTAGGGTCAAGTCGACAGGCT-GACAAAAAGTAAAGAAGTCTTTAGGGC
129 AAAGGTAAGGAAGTCTCTAAGGTCAAGTCGACAGG-TAGACAAAAAGTAAA-AAGTCTCTAGGGT
* * * *
1527297 CAAAGCCGACAGGCAAACTAAAGGTAAGGATGATTTCAAGGTCAAACCTGACAAGAAA
192 CAAAGCCGACAGGCAGACTAAAGGTAAGGAAG-TTTCAAGGTCAAAGCTGACAAGCAA
* * * * * * * ** * **
1527355 ACTAAAGGTAAGGAAGTCTCTAGGGTCAAAGTCGATAGGAAGATTGAGGGTAAAATGGTCTATCG
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
*** * * ** *
1527420 GGTCAAAGATGATAGGAAGACTAAAGGTAAGGAAGTCTCCAAGG-TCAAATTGATGAGCAGACTA
66 GGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAACCGAAG-GCAGACTA
** * *
1527484 AAGGTAAGGAAGTCTCTTGGGTCAAGTCGACAGGTAGACAAATAA-TAAAAGAGTCTCCAAGGTC
130 AAGGTAAGGAAGTCTCTAAGGTCAAGTCGACAGGTAGACAAA-AAGTAAAA-AGTCTCTAGGGTC
* * * * * * *
1527548 AAAGCTGATAGGCAGACTAAAAGTATGGAAGTTTCCAAGGTTAAAGCTGATAGGCAA
193 AAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTT-CAAGGTCAAAGCTGACAAGCAA
* * * * * * * *
1527605 ACTAAAGGTAAGGAAGCCTCAAAGGTCAAGGTCGAGACGGAGACTAAAGGTAAAGAAGTCTCTAA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
* * * * *
1527670 GGTTAAAGCCAACAAGCAGACTAAAGGT-AGTGAAGTCT-CAAGGGTCCAAGCCAAAAGGCAG-C
66 GGTCAAAGCCAACAAGAAGACTAAAGGTAAG-GAAGTCTCCAAGGCT-CAAACC-GAAGGCAGAC
* * * * * ** *
1527732 TTGAAGGTAAAGAAGTCTCTAAAGTTAAGCCGGTAGGTAGATAAAAAGTTAAAAAGTCTCTAGGG
128 -TAAAGGTAAGGAAGTCTCTAAGGTCAAGTCGACAGGTAGACAAAAAG-TAAAAAGTCTCTAGGG
* * * * * *
1527797 TCAAAGTCGACAAGCAGACAAAAGGTAAGGAAGTCTCAGGGGTCAAAGCTAACAAGCAA
191 TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTCA-AGGTCAAAGCTGACAAGCAA
* * * ** *
1527856 ACTAAAGGTAGGAAAGTCTCCAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAGGAAGTCTCCAA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
* * * * *** * * *
1527921 GGTTAAAGCCAATAGGTAGACTCTGGGTAA-TATAGTCTCCAAGG-TCCAAACCGATAGGAAAAC
66 GGTCAAAGCCAACAAGAAGACTAAAGGTAAGGA-AGTCTCCAAGGCT-CAAACCGA-AGGCAGAC
* * * * *
1527984 TAAAGGTAAGGAAGTCTCTAAGGTCAAAG-CTGATAGGCAGACTAAAGGTAAGGAAGTCTCTAGG
128 TAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGTAA-AAAGTCTCTAGG
* * * * * * * *
1528048 GTC-AAGTCGACAGGCAGAC-AAGAAGTAAGGAAATCTCCAAGGTCAAAGCCGATAGGCAG
190 GTCAAAGCCGACAGGCAGACTAA-AGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* * * * **
1528107 ACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGTTGACAAGTAA-ACTAAAGGTAAGGAAGTCTCTA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAG-AAGACTAAAGGTAAAAAAGTCTCTA
* ** * * * * * * * ** *
1528171 GGGTCAAATTCGACAGGCATACTAAAAGTAAGGAAGTCTCCAAGG-TGAAAGGCGACAAACAAAC
65 AGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGAC
** * * * * ** ** * * *
1528235 TAAAGGTAAAAAAGTGTCCAGGGTTAAACCGACAACTAGACTAAAGGTAAGGAAGTCTCTTA-GG
128 TAAAGGTAAGGAAGTCTCTAAGGTCAAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTC-TAGGG
* * * * * * * * * *
1528299 TC-AAGCTGATAGG-AAAATAAAAAGTAAGAAAGTCGTT-AGGGTCAAAGCCGATAAGCAG
191 TCAAAGCCGACAGGCAGACT-AAAGGTAAGGAAGT--TTCAAGGTCAAAGCTGACAAGCAA
* * *
1528357 ACTAAAGGTAA-AGAAGTTTCTAAGGTCAAAGTCGACAAGCAA-AGTAAAGGTAAGAAAGTCTC-
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAG-AAGACTAAAGGTAAAAAAGTCTCT
* * * * * * *
1528419 AAGGGTCAAAGTCGATAGGCAA-ACT-AAGTGTAAAGAAGTCTCTAAGG-TCAAAGCCAATAGGC
64 AA-GGTCAAAGCCAACAAG-AAGACTAAAG-GTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGC
* * * * *
1528481 AGACTAAAGGTATGGAAGTCTCT-AGTGTCAAAGTCGACAGGCAAACTAAAGGTAAGAAAGTCTC
124 AGACTAAAGGTAAGGAAGTCTCTAAG-GTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCT-
* ** * * * ** * *
1528545 CT-TGGTCAAAGTTGATAGGTAGACTAAAGGTAAGGAAGTCTCCCGAGTCAAAGTTGACAGGCAA
185 CTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTCAAG-GTCAAAGCTGACAAGCAA
* * * * * *
1528609 ACTAAAAGTAAGGAAAAT-TCCAAGGTCAAAGTCGATAAGCAGACTAAAGACTAAGGGTAAGAAA
1 ACTAAAGGTAA-GAAAGTCTCTAAGGTCAAAGTCG---A-CA-A--GAAGACTAAAGGTAAAAAA
* * * * * * * * **
1528673 GTCTCTAAAGTC-AAGCCGA-TAGAAAGACTAAGGGTAATGAAGTTTCCCATG-TCAAAATTGAC
58 GTCTCTAAGGTCAAAGCCAACAAG-AAGACTAAAGGTAAGGAAGTCTCCAAGGCTC-AAACCGA-
* * * * * * ** * *
1528735 AAGCAGACTAAAGGTAGGGAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAGGGTAAGGAAGC
120 AGGCAGACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGT
* * * * * * *
1528800 CTCCAAGGCCAAAGCCAATAGGTAGACTAAAGGAAAGGAAGTTTCTAAGGTCAAAG-TCGACAGA
183 CTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTC-AAGGTCAAAGCT-GAC--A
1528864 CAGACTATA
244 -AG-C-A-A
* * * * * * * *
1528873 AGTAAGGGTAA-AGAAGTCTCCAAGGTCAAAG-CTGACAGGTAGACTTAAGGTAAAAAAGTATCC
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTC-GACAAGAAGACTAAAGGTAAAAAAGTCTCT
* ** * * * * * * *
1528936 AAGGTGAAAGTTAACAGGTAGACT-AAGGTAAGGAAGTCTACAAGGTTAAAACCGACACGCAAAC
64 AAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAACCGA-AGGCAGAC
* * * * * *
1529000 TAAAGGTAAGGAAGTCTCCT-AGGTCAAAGACGATAGGTAGACTAAAGGTAAGGAAGTCTCTAAG
128 TAAAGGTAAGGAAGTCT-CTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTAGG
* * * * * * * * *
1529064 GTCAAAACTGACA--AAGAACTTGAAGGTAAGGAAGTCTCTAGAGT-TAAGCTGACAAGGAG
190 GTCAAAGCCGACAGGCAG-AC-TAAAGGTAAGGAAGTTTCAAG-GTCAAAGCTGACAAGCAA
* * * * * * * * * ** * *
1529123 ACAAAAAGTAA-AGAAGTCTTTAGGGTCAAAGCCGATAGGCAGACTAAAGCTAAGGAAGTTTCCA
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * ** **
1529187 AGGTCAAA-CCTGA-AAGATAAACTAAAGATAAAAAAGTCTCCAAGG-TCAAAATTGACAGGCAG
65 AGGTCAAAGCC-AACAAGA-AGACTAAAGGTAAGGAAGTCTCCAAGGCTC-AAACCGA-AGGCAG
* * * * * *** *
1529249 ACTAAGGGTAAGAAAGTCTC-AAGGGTCAAAG-CTAATAAGTAGATTGAAGGTAAAATAGTCTCT
126 ACTAAAGGTAAGGAAGTCTCTAA-GGTC-AAGTC-GACAGGTAGACAAAAAGTAAAA-AGTCTCT
* * * * * * * * *
1529312 AAGGTCAAAGCTGATAGGCGGACTAAAGGTAAGGAAGTCTCAGAGGTCAAAG-TCGATAGGTAG
187 AGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTCA-AGGTCAAAGCT-GACAAGCAA
* * * * * * *
1529375 ACTAAAGGTAAGGAAGTCTCTAGGGTC-AAGCCGATAGGCAA-ACAAAAAGTAAAAAAGTCTCTA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAG-AAGACTAAAGGTAAAAAAGTCTCTA
* * * * * * * ** *
1529438 GGGTCAAAGTCGATAGGGAGACTAAAGGTAA-AATAGTCTCCAAGG-TCAAAGTTGATAGGCACA
65 AGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGA-AGTCTCCAAGGCTCAAA-CCGA-AGGCAGA
** * * * * * ** * *
1529501 CTAAAGGTAAAAAAGTCTCTAGGGTTAAAGGCGACAAGCA-ATGTAAAGGTAATGAAA-TCTCCA
127 CTAAAGGTAAGGAAGTCTCTAAGG-TCAAGTCGACAGGTAGA-CAAAAAGTAA--AAAGTCTCTA
* * * * * * * *
1529564 TGGTCAAAGTCGACATGCAGACAAAAGGTAAGGAAGTCTTTAGGGTC-AACCCGACAAGCAA
188 GGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* * * * *
1529625 AC-AAATAGTAA-AGAAGTCTCCAAGGTCAAAG-CTGACAGGAAAACTAAAGGTAAAGAAGTCTC
1 ACTAAA-GGTAAGA-AAGTCTCTAAGGTCAAAGTC-GACAAGAAGACTAAAGGTAAAAAAGTCTC
* * * * ** *
1529687 T-AGAGTCAAAGTCGACACGTAGACTAAAGGTAAGGAAGTCTCC-AGGGACAAAGTCGGCG-GGT
63 TAAG-GTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA--C--CGAAG-
* * * * ** * ** *
1529749 CGACTAAAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACCAAGGGTAATGA
122 -G-C---AGACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AA
* * * * * * * * *
1529814 AGTTTCCAAGGTCAAAGCCAACAAGCAGACTAAAGTTAAGGAAGTTTCTAGGGTCAAAG-TCAAT
180 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTC-AAGGTCAAAGCT-GAC
1529878 AAGCAA
243 AAGCAA
* * * * * * *
1529884 A-TTAAGGTTAAGGAAGTCTCTAAGGTCAAAGTCGATAGGCAGACTAAAGGCAAAGAAGTCTCTA
1 ACTAAAGG-TAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
** * * * * ** ** *
1529948 AGGTCAAAATTGATAGGCAA-ACTGCAGGTAAGGGTAAAAAAGTCTTTAAGG-TCAAAGCTGACA
65 AGGTC-AAA--GCCA-ACAAGA-AG-A-CTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-A
* * ** * * * * * * * * * * *
1530011 CGTAGGTTAAAGTTAAGAAAGTCTCCAAAGTCAAAG-CGAATAAGCACACTAAAGGTATAGAAGT
121 GGCAGACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCG-ACAGGTAGACAAAAAGTA-AAAAGT
* * * * * * * *
1530075 TTCTAGTGTCAAAGCCGACAGGTAGACAAAAAGTATGGAAGTTTCCAAGGTCAAAG-TCGATAGG
183 CTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTT-CAAGGTCAAAGCT-GACAAG
1530139 CAA
246 CAA
* * * * **
1530142 ACTAAAGGTAAGGAAA-TTTCTAGGGTCAAAG-CTA-ATAGGAAAACTAAAGGTAAGGAAGTCTC
1 ACTAAAGGTAA-GAAAGTCTCTAAGGTCAAAGTCGACA-A-GAAGACTAAAGGTAAAAAAGTCTC
* * * * * * * ** * * **
1530204 CATGATCAAA-CTCAACAGGCAGAGTAAAGATTAAGGATAAGAGAGTCTTTAGGGAC-AAAATTG
63 TAAGGTCAAAGC-CAACAAGAAGACTAAAG-GTAA-G----GA-AGTCTCCAAGG-CTCAAACCG
* ** * * * * * * * *
1530267 ATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGGTCAAAG-CTAACAAGCAGACTAAAGGTAAGGA
119 A-AGGCAGACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGTAA-AA
* * * * * * *
1530331 AGTCTCTAAGG-CTAAAGTCGATAGGCAGACT-AGGGATAAAGAAGTTTTCAAGGTCAAACCCGA
180 AGTCTCTAGGGTC-AAAGCCGACAGGCAGACTAAAGG-TAAGGAAG-TTTCAAGGTCAAAGCTGA
*
1530394 GAAGCAA
242 CAAGCAA
* * * * * * *
1530401 ACTTAAGATAA-AGAAGTTTCT-AGGCTCAAAGTAGACAAGCAGA-TAAGGGTAAAGAAGTCTCT
1 ACTAAAGGTAAGA-AAGTCTCTAAGG-TCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCT
* * * ** * *
1530463 -AGAGTCAAAGCCGACAGGCAGACTAAAAATTAAGTGTAA-GAAGTCT-TTAGGGTCAAAATCGA
64 AAG-GTCAAAGCCAACAAGAAGACT----A--AAG-GTAAGGAAGTCTCCAAGGCTC-AAACCGA
* ** * * * * * * * * *
1530525 TAGGCAGACTAAGGGTAAAAAAGTTTCCAAGATCAAAGCCAACAAGCAGACAAAAGGTAAGGAAG
120 -AGGCAGACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAG
* * * * * * *
1530590 TCTTTAGGG-CTAAAGTCAATAGGCAGACTAAGGGTAAGGAAGTATCCAAGGTCAAAGCCGACAA
182 TCTCTAGGGTC-AAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAA
*
1530654 GCAG
245 GCAA
** * * * * * * * * *
1530658 ACTAAACATAA-AGAAGTTTCCAAGCTTAAAGCCGACAAGCAGACTAAGGGTAAAGAAGTCTCCA
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * * * * **
1530722 AAGTCAAAGCTGTCAGGCGGACTA-AAGATTAAGGGTAAGAAAGTCTTCAAGG-TCAATGTCGAT
65 AGGTCAAAGC---CA-----ACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAA-ACCGA-
* ** ** * * * * *** * * * * *
1530785 AGGCAAACTACGGGTAAAAAAGTTTTTAAGGTTAAAGCCGACAAACACACTAAAGGTAAGGAAGC
120 AGGCAGACTAAAGGTAAGGAAGTCTCTAAGG-TCAAGTCGACAGGTAGACAAAAAGTAA-AAAGT
* * ** * * * ** * * * *
1530850 CTCTAAGGCCAAAGTTGACAGACAAACTAAGGGTAAAAAAGTCTCCAAGGTCAAAGTTGGCGAGC
183 CTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGC
1530915 AA
247 AA
* * * * ** * * * * * *
1530917 ACTAAGGGTAA-AGAATTTTC-CAGCAACAAAGCCGACAA-ACAAACTAAAAGTAAAGAAGCCTA
1 ACTAAAGGTAAGA-AAGTCTCTAAG-GTCAAAGTCGACAAGA-AGACTAAAGGTAAAAAAGTCTC
* * * * * * *
1530979 TAGGGTTAAA-CCAACAGGCAA-ACTAAAGGTAAGGAAGTTTCGAAGG-TCAAAGCTGACAAGCA
63 TAAGGTCAAAGCCAACAAG-AAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCA
* * * *
1531041 GACTAAAGGTAAGGAAGTCTCTAAGGTCTAA-ACTGACAAGCAGACTATAGGTAAGGGTAAAAAA
125 GACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGAC-A-A---AA-AGT-AAAAA
* * * * * * * * *
1531105 GCCTC-AAGGTCATAGGCGACAAGCAGACTAAGGGTAAAGAAGTCTCCAAGGTCAAAGCTGACAT
181 GTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAA
* *
1531169 GTAG
245 GCAA
* * * * * * *
1531173 ACTAAAGGTAAAAAAGTCTCCAAGGCCAAAGT--ACATGGCAA-ACT-GAGGATAAAAAAGTATG
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACA-AG-AAGACTAAAGG-TAAAAAAGTCTC
* ** * * * * *
1531234 TAAGGTCAAAGCTAACGGGCAGACTAAAGGTATGGAAGTCTCTAACG-TCAAAGCCAATAGGCAG
63 TAAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAG
* * * * * * * * *
1531298 GCTAAAAGTAAAGAAGTCTCT-AGAGTTAAGGGCGATAGGCAGACTAAAGGTAAGAAAGTCTCTA
126 ACTAAAGGTAAGGAAGTCTCTAAG-GTCAA-GTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTA
* * * * ** *
1531362 AGGTCAAAGCCGACAAGCAGACTAAAGAG-AATGAAGTCTCTAAGGTCAAAGCTGACTGGTAGA
188 GGGTCAAAGCCGACAGGCAGACTAAAG-GTAAGGAAGTTTC-AAGGTCAAAGCTGACAAGCA-A
* * * ** * * ** * *
1531425 A-TAAAGGTAAAAAAGTCTCCAGGGTCAAAGTCGACCGGTAGACTAAATGTAAGGAAGCCTCCAA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
* * * ** * * *
1531489 GGTCAAAGTCGACAGCTAGACTAAAGACT-AAGACTAAAAAAGTCTACAAGGC-GAAGCCGATAG
66 GGTCAAAG-C--CAAC-A-A--GAAGACTAAAG-GTAAGGAAGTCTCCAAGGCTCAAACCGA-AG
* * ** * * * ** * ** *
1531552 GCAAACTAAGGGTAAAAAATTTTCCAAGGTCAAAACTGATAATTTA-ACAAAACGTAAAAAAGTC
122 GCAGACTAAAGGTAAGGAAGTCTCTAAGGTCAAGTC-GA-CAGGTAGACAAAAAGT-AAAAAGTC
* * ** * * * * * *
1531616 TCAAGGGCCAAAGTTGATAGGCA-AATAAAGGGTAAAGAAGTCTCCAAGGTCAAAGTTGAGAAGC
184 TCTAGGGTCAAAGCCGACAGGCAGACTAAA-GGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGC
*
1531680 AG
247 AA
* * * * * * * *
1531682 ACTAGAGGTAA-AGAAGTCTCCAAGGTTAAAGTCGACATGCAGACTAAGGGTAAAGAAGTCTCTT
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* ** * * * * * *
1531746 GGGTCAAAGCTGACATGCAGACTAAAGGTATGAAAGTCTCCAACG-TCAAAGCTGACAGGCAGA-
65 AGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGAC
* * * * * * * * * *
1531809 TAAAAAGTAAGGAAGTCACTAGGGTCAAAGTCGATAGGCAGACTAAAGGTAAAAAAATTTCCAGG
128 T-AAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGT-AAAAAGTCTCTAGG
** * * * * *
1531874 GTCAAAGTTGACAGGCAAACTAAAGCTAAGGAAGTCTCCAGGGTCAAAG-TCGACAAGCAT
190 GTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCT-GACAAGCAA
* * * * ** * * * * * *
1531934 ATTAGAA-GTAA-AGAAGTCTCCAACGTGAAAACCGATAGGAAAACTAAAGGTAAGAAAGTGTCC
1 ACTA-AAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCT
* * * * * * * * ** *
1531997 ATGGTCAAATCCGACAAGTAGACTAAAGCTACA-GAAGTCTCTAAGG-TTAAGCTAACAAGCAGA
64 AAGGTCAAAGCCAACAAGAAGACTAAAGGTA-AGGAAGTCTCCAAGGCTCAAACCGA-AGGCAGA
** ** * * * * * ** ** * *
1532060 AAAAAATTAAGAAAGTCTTTAGGGTCAAAG-CTGATAGGCAGACCGAGGGTAAAGAAGTTTTCCA
127 CTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGTAAA-AAG-TCTCTA
* * ** * * *
1532124 -GGTCAAAGCCAACAAGCAGACTAAAGGTAAAAAAGTCTTTAAGGT-AAAGGTTGAC-AG-ATGG
188 GGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAA-GCTGACAAGCA--A
* * * * *
1532185 ACT-AAGGTAA-AGAAGTCTTTAGGGTCAAAGTCGACAAGCAGACTAAAGGTATAGAAGTCTCT-
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * * * * * *
1532247 AGTGTCAAAGCCGATAGGCAGACTAAAGGTAAGAAAGTCTCC-TGG-TCAAAGCTGACAGGCAAA
65 AG-GTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGA
* * * * *
1532310 CTAAAGGTAAGGACGTCTCTAGGGTCAAAGTCGACACGCAGACTAAAGACTTAGGGCAAAAAAGT
127 CTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGAC-AAA-A---A--G-TAAAAAGT
* * * * ** * * * * *
1532375 CTCCAAGGTCAAAGCTGATAGAAAGACTAAGGGTAATGAAGTTTCCAAGGCCAAAGCCGACAAAC
183 CTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTT-CAAGGTCAAAGCTGACAAGC
*
1532440 AG
247 AA
* * * * * * * * * *
1532442 ACTAAGGGTAAGGAAGT-TTTCAATGTTAAAGTCAACAGGCAGACTAAGGGTAATAAAGTCTCTA
1 ACTAAAGGTAAGAAAGTCTCT-AAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
** * * * * * * *
1532506 AGGTCAAAATCGACAGGCAGAATAAAGGCAAGGAAGTCTCCAAGG-TCAAAGCTGACTGGCAGAC
65 AGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGAC
* * * * * * * * *
1532570 TATAGTTAAGGGTAAAGAAGTCTCCAAGGTTAAAGCCGATAAGTAGACTAAAGGTAAAAAAGTAT
128 --TA---AA-GGTAAGGAAGTCTCTAAGG-TCAAGTCGACAGGTAGACAAAAAGT-AAAAAGTCT
** * * * * * * *
1532635 CTAAAGTAAAAGTCGACAGGCAGACT-AAGATAAGGAAGTCTCCAAGGTCAAAACGGAC-AGTAA
185 CTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAG-CA
1532698 A
248 A
* * ** * * * * * ** *
1532699 ACTAAAGGTAAGGAAGTC-CTAGGGTTGAAGTCAACATGTACACCAAAGGTAAGGATGTCTCCT-
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCT-CTA
* ** * *
1532762 AGGTCAAAACTGAC-AGCTAA-ACTAAAGGTAAGGAAGTCTCCAAGG-TCAAAGCCAACAGGTAG
65 AGGTCAAAGCCAACAAG--AAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAG
* * * * * * * * *
1532824 CCTAATGGTTAGGAAATCTGT-TGG----GTCGACAGGGAGACAAAAAGTAAGGAAGTTTCTAGG
126 ACTAAAGGTAAGGAAGTCTCTAAGGTCAAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTAGG
* * * * * *
1532884 GTC-ACGACCGATAAGCAGACTAAAGGTAAGGGAGTTTCTATGGTCAAAGCTGA-AAGGTAA
190 GTCAAAG-CCGACAGGCAGACTAAAGGTAAGGAAGTTTC-AAGGTCAAAGCTGACAA-GCAA
* * * * **
1532944 ACTAAAGGTAA-AGAAGTCTCTAAGGTCAAAGTCAACAGGCAGACTAAGGGTAAGGAAGTCTCT-
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * * * ** ** * * *
1533007 AGGATTAAAGCCGATAGGTAGACTAAAGG-AAAAATAGTCT-TTAGGGTCAAAGTCGATAGGAAG
65 AGG-TCAAAGCCAACAAGAAGACTAAAGGTAAGGA-AGTCTCCAAGGCTCAAA-CCGA-AGGCAG
* * * * * * * * *
1533070 TCAAAAGGTAAAGAAGTCTCAAAGGTCAAAGCCAACAGGTAGACTAAAGGTAAGGAAGTCTCTAG
126 ACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTAG
* * * * ** * * * * *
1533135 GGTC-AAGCCGATAGGGAAACAAAAAATAAAGAAGTATTTAGGGTCAAAGTTGAC-AGGAA
189 GGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* * * * * **
1533194 GAC-AAGGGTAA-AATAGCCTC-AAGGGTCAAA-ACTGACAAGTAGACTAAAGCTAAGGAAGTCT
1 -ACTAAAGGTAAGAA-AGTCTCTAA-GGTCAAAGTC-GACAAGAAGACTAAAGGTAAAAAAGTCT
* * * ** * * **
1533255 C-AA-GTCTTAAAGTCGACAAAAAGACTAAAGGTAAAAAAATCTACAAGG-TCAAACCTGACATA
62 CTAAGGTC--AAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAACC-GA-AGG
* * * * * * * * * * * *
1533317 TAGACAAAAGTTAAGAAAGTCTCCAAGGTCAAAG-CTGATATGAAAACTAAAGGTAAAGAAGTAT
123 CAGACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGACAAAAAGTAAA-AAGTCT
* * * * * * * *
1533381 TTAGAGTCAAAGTCGACATGTAGACTAAAGGTAAGGAAGTTTCCTAA-GTCAAAG-TCAACAGGT
185 CTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTT-C-AAGGTCAAAGCT-GACAAGC
*
1533444 AG
247 AA
* * * ** * * *
1533446 ACTAAAGGTAAGGAAA-TCTCTAAGGTCAAAGGT-GACATGCAGACAAAAATTAAGAAACTCTCC
1 ACTAAAGGTAA-GAAAGTCTCTAAGGTCAAA-GTCGACAAGAAGACTAAAGGTAAAAAAGTCTCT
*** * * * * * * ** * * *
1533509 AAGGTCAAAGTTGATAGGAAAACAAAAGATAAAGAAGTCT-TTAGAG-TCAAAGTCGACATGTAG
64 AAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAG-GCTCAAA-CCGA-AGGCAG
* * * * * * *
1533572 ACTAAAGGTAAAGAAGTTTCCT-AGGTCAAAGCCGACAGGTAGACTAAAGGTAAGGAAGTTTCTA
126 ACTAAAGGTAAGGAAGTCT-CTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTA
* * * * * *
1533636 AGGTCAAAGTCGACAGGCAGACTAAAGACTAAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGA-AA
188 GGGTCAAAGCCGACAGGCAGACT----A--AA-GGTAAGGAAGT-TTCAAGGTCAAAGCTGACAA
*
1533700 -AAA
245 GCAA
* * * * * * * * *
1533703 ATTAAGGGTAATG-AAGTTTCCAAGGTCAAAGCCGACAAGCAGACTAAGGGCAAGAAAGTCTCTA
1 ACTAAAGGTAA-GAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * * * * * * * *
1533767 GGGTCAAAGTCGATAGGAAAACTAAGGGTAAAGAAGTCTCTAAGG-TCAAAGCCGACAAGCAGAC
65 AGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGAC
* * * *
1533831 TAAAGGTGAGGAAGTCTCTAAGGTCAAAG-CTGATAGGTTGACTACAGGTAAGGGTAAAGAAGTC
128 TAAAGGTAAGGAAGTCTCTAAGGTC-AAGTC-GACAGGTAGAC-A-A---AA-AGTAAA-AAGTC
* * * * * * * * *
1533895 TCCAAGGTCAAAGCCGAGAGGCAAACTAAAGGTTAA-AAAGTCTCCAAAGTTAAAG-TCGATAAG
184 TCTAGGGTCAAAGCCGACAGGCAGACTAAAGG-TAAGGAAGT-TTCAAGGTCAAAGCT-GACAAG
*
1533958 CAG
246 CAA
* * * ** * * *
1533961 ACT-AAGGTAAAAAAGTCTCCAGGGTCAAAACCGACAAGCAGAC-AAACGATAAAGAAGTCTCCT
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAA-GGTAAAAAAGTCT-CT
** * * * * * * * *
1534024 -AGGTCAAAGCGGACTAGCAGACTAAAGGTATGAAAGTCT-CTAGTG-TCAAAGCCGACAAGTAA
64 AAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAG-GCTCAAA-CCGA-AGGCAG
* * * * * * * * * * * * * * * *
1534086 ACAAAAAGTATGGAAGTCTCCACGGTCAAAGCCAACAAGCAGACTAAAGGGAAGGAAGTTTCCAA
126 ACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAA-AAAGTCTCTAG
* * * * * * * *
1534151 GGTCAAAGCTGATAGGCAAACTAAAGGTAAAGAAGTCTCTAGGGTCAAAG-TCGATAAGCAG
189 GGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTC-AAGGTCAAAGCT-GACAAGCAA
* * * * * ** *
1534212 ACTAAGGGTAA-AGAAGTTTCCAAGGTCAAAGTCAACAAGTAGACTAAAGGTAAGGAAGTCTC-C
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTA
* * * * * * * * *
1534275 AGGTCTAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCCAATG-TCAAAGCTGACAAGCAGA
65 AGGTC-AAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAGA
* * * * * * * * ** *
1534339 CTAAAGATAAAGAAATTTCT-AGGCTCAAAGCCGATAGGCA-ATCTAAGGGTAAAGAAGTCTCCA
127 CTAAAGGTAAGGAAGTCTCTAAGG-TC-AAGTCGACAGGTAGA-CAAAAAGTAAA-AAGTCTCTA
* * * * * *
1534402 GAGTCAAAGCTGACAAGCAGACTAAAGATTAAGGGTAAAAAAGTCATT-AAGGTCAATA-CCGAT
188 GGGTCAAAGCCGACAGGCAGACTAAAG-GTAA-GG-----AAGT--TTCAAGGTCAA-AGCTGAC
*
1534465 AGGCAA
243 AAGCAA
* * * ** *
1534471 ACTAATGGTAAAAAAGTTTC-AAGGTCAAAG-CTGACAAGCAA-ACTAAAGGTAAGGAAGTCTCA
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTC-GACAAG-AAGACTAAAGGTAAAAAAGTCTCT
* *** * * * * * * *
1534533 AAGGCCAAAGTTGAC-AGACAGACTAAGGGTAAAGAAGTCTCTAAGG-TTAAAGCGGACAAGCAA
64 AAGGTCAAAGCCAACAAGA-AGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAG
* ** * **** * ** * *
1534596 ACTGAAGGTAAATAAGTCTCTAAGGTCAAAGTTGACAAACGGACTAAGGGTAAAGAAGTCTCGAA
126 ACTAAAGGTAAGGAAGTCTCTAAGGTC-AAGTCGACAGGTAGACAAAAAGTAAA-AAGTCTCTAG
* * * * * * * *
1534661 GGTCAAAGCTGAGAGGTAGACTAAAGGTAACGAAGTCTCGAAGGTCAAAG-TGGATAGGCAT
189 GGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTTTC-AAGGTCAAAGCT-GACAAGCAA
* * * * * * * *
1534722 A-TCAAAGGTATGGAAGTCTCCAGGGTCAAAG-CTGATAGGCAA-AATAAAGGTAAAGACA-TCT
1 ACT-AAAGGTAAGAAAGTCTCTAAGGTCAAAGTC-GACAAG-AAGACTAAAGGTAAA-AAAGTCT
* * * * * * * *
1534783 C-CAGGTTAAAACCGATAAGAAAACTACAA-GTAAGGGAAAAAAAGTCT-CAAGG-TTAAAGACG
62 CTAAGGTCAAAGCCAACAAGAAGACTA-AAGGTAA-GG-----AAGTCTCCAAGGCTCAAA-CCG
* ** * * * * * * * *
1534844 ACAGGTAGACTAAAGGTAAAAAACTCTCT-AGGATCAAAGCCAATAGGCAGAC-TATAGTAAGGA
119 A-AGGCAGACTAAAGGTAAGGAAGTCTCTAAGG-TC-AAGTCGACAGGTAGACAAAAAGTAA-AA
* * * * * * * ** *
1534907 AGTCTCTAAGGTCAAAGTCGATAGGCAGGCTAAAGATAAAGAAGTCTCCAAGGTCAAAGCCAAAA
180 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACA
*
1534972 AGCAG
244 AGCAA
* * * * * *
1534977 ACTAAAGGTAAGGAACTCTCTAAGGTCAAAG-CTGACAA-ACATATTAAGGGTAAAATAA-TCTT
1 ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTC-GACAAGA-AGACTAAAGGTAAAA-AAGTCTC
* * * * * * * * * *
1535039 TAGGGTTAAAGCCGACAGGCAGACTAAAAGTAAGTAAGTCTTCAAGG-TCAAAGCTGACAGACAG
63 TAAGGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAA-CCGA-AGGCAG
* * * * ** *
1535103 ATTAAAAGTAAGAAAGTCT-TCAGGGTCAAAG-CTGACAACTAGACAAAAAGTAAAAAAGTCTTT
126 ACTAAAGGTAAGGAAGTCTCT-AAGGTC-AAGTC-GACAGGTAGACAAAAAGT-AAAAAGTCTCT
* * * * * * * * *
1535166 AGGGTCAAAGCTGACA-GCTAGACAAAAAGTAAAGAAGTCTTCAGGGTTAAAGCTAACAGGCTA
187 AGGGTCAAAGCCGACAGGC-AGACTAAAGGTAAGGAAGT-TTCAAGGTCAAAGCTGACAAGCAA
* * * * * * * * *
1535229 CCTAAAGGTAA-AGAAGTTTCCAAGGTTAAAGCCGATAGGTAA-ACTAAAGGTAAAGAAGTCTCC
1 ACTAAAGGTAAGA-AAGTCTCTAAGGTCAAAGTCGACAAG-AAGACTAAAGGTAAAAAAGTCTCT
1535292 AAGG
64 AAGG
1535296 CTAAAGTCGA
Statistics
Matches: 7877, Mismatches: 2012, Indels: 1141
0.71 0.18 0.10
Matches are distributed among these distances:
243 4 0.00
244 38 0.00
245 53 0.01
246 82 0.01
247 74 0.01
248 71 0.01
249 92 0.01
250 1084 0.14
251 2012 0.26
252 1171 0.15
253 75 0.01
254 36 0.00
255 155 0.02
256 458 0.06
257 826 0.10
258 890 0.11
259 581 0.07
260 28 0.00
261 8 0.00
262 8 0.00
263 41 0.01
264 35 0.00
265 49 0.01
266 6 0.00
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (248 bp):
ACTAAAGGTAAGAAAGTCTCTAAGGTCAAAGTCGACAAGAAGACTAAAGGTAAAAAAGTCTCTAA
GGTCAAAGCCAACAAGAAGACTAAAGGTAAGGAAGTCTCCAAGGCTCAAACCGAAGGCAGACTAA
AGGTAAGGAAGTCTCTAAGGTCAAGTCGACAGGTAGACAAAAAGTAAAAAGTCTCTAGGGTCAAA
GCCGACAGGCAGACTAAAGGTAAGGAAGTTTCAAGGTCAAAGCTGACAAGCAA
Found at i:1527615 original size:250 final size:251
Alignment explanation
Indices: 1527184--1527639 Score: 584
Period size: 250 Copynumber: 1.8 Consensus size: 251
1527174 AAGCCAACAA
* * *
1527184 GAAGACTAAGGGTAAGGAAGTCTCCAAGGCTAAAGCTGACAGGTAGACTAAAGGTGAGGAAGTCT
1 GAAGACTAAAGGTAAGGAAGTCTCCAAGGCTAAAGCTGACAGGCAGACTAAAGGTAAGGAAGTCT
** *
1527249 CTAGGGTCAAGTCGACAGGCTGACAAAAAGTAAAGAAGTCTTTAGGGCCAAAGCCGACAGGCAAA
66 CTAGGGTCAAGTCGACAGGCTGACAAAAAGTAAAGAAGTCTCCAAGGCCAAAGCCGACAGGCAAA
* * * * *
1527314 CTAAAGGTAAGGATGATTTCAAGGTCAAACCTGACAAGAAAACTAAAGGTAAGGAAGTCTCTAGG
131 CTAAAAGTAAGGAAGATTTCAAGGTCAAACCTGACAAGAAAACTAAAGGTAAGGAAGCCTCAAAG
1527379 GTCAAAGTCGATAGGAAGATTGAGGGTAAAATGGTCTATCGGGTCAAAGATGATAG
196 GTCAAAGTCGATAGGAAGATTGAGGGTAAAATGGTCTATCGGGTCAAAGATGATAG
* *
1527435 GAAGACTAAAGGTAAGGAAGTCTCCAAGG-TCAAA-TTGA-TGAGCAGACTAAAGGTAAGGAAGT
1 GAAGACTAAAGGTAAGGAAGTCTCCAAGGCT-AAAGCTGACAG-GCAGACTAAAGGTAAGGAAGT
* * * *
1527497 CTCTTGGGTCAAGTCGACAGG-TAGACAAATAA-TAAA-AGAGTCTCCAAGGTCAAAGCTGATAG
64 CTCTAGGGTCAAGTCGACAGGCT-GACAAA-AAGTAAAGA-AGTCTCCAAGGCCAAAGCCGACAG
* * * * * * *
1527559 GCAGACTAAAAGTATGGAAG-TTTCCAAGGTTAAAGCTGATAGGCAAACTAAAGGTAAGGAAGCC
126 GCAAACTAAAAGTAAGGAAGATTT-CAAGGTCAAACCTGACAAGAAAACTAAAGGTAAGGAAGCC
*
1527623 TCAAAGGTCAAGGTCGA
190 TCAAAGGTCAAAGTCGA
1527640 GACGGAGACT
Statistics
Matches: 174, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
249 6 0.03
250 135 0.78
251 33 0.19
ACGTcount: A:0.39, C:0.14, G:0.28, T:0.19
Consensus pattern (251 bp):
GAAGACTAAAGGTAAGGAAGTCTCCAAGGCTAAAGCTGACAGGCAGACTAAAGGTAAGGAAGTCT
CTAGGGTCAAGTCGACAGGCTGACAAAAAGTAAAGAAGTCTCCAAGGCCAAAGCCGACAGGCAAA
CTAAAAGTAAGGAAGATTTCAAGGTCAAACCTGACAAGAAAACTAAAGGTAAGGAAGCCTCAAAG
GTCAAAGTCGATAGGAAGATTGAGGGTAAAATGGTCTATCGGGTCAAAGATGATAG
Found at i:1528367 original size:250 final size:250
Alignment explanation
Indices: 1528022--1528471 Score: 629
Period size: 250 Copynumber: 1.8 Consensus size: 250
1528012 GCTGATAGGC
* * *
1528022 AGACTAAAGGTAAGGAAGTCTCTAGGGTCAAGTCGACAGGCAGACAAGAAGTAAGGAAATCTCCA
1 AGACTAAAGGTAAGGAAGTCTCTAGGGTCAAGTCGACAGGAAAACAAAAAGTAAGGAAATCTCCA
* * * * *
1528087 AGGTCAAAGCCGATAGGCAGACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGTTGACAAGTAAACT
66 AGGTCAAAGCCGATAAGCAGACTAAAGGTAAAGAAGTTTCTAAGGTCAAAGTCGACAAGCAAACT
* * * * *
1528152 AAAGGTAAGGAAGTCTCTAGGGTCAAATTCGACAGGCATACTAAAAGTAAGGAAGTCTCCAAGGT
131 AAAGGTAAGAAAGTCTCAAGGGTCAAAGTCGACAGGCAAACTAAAAGTAAAGAAGTCTCCAAGGT
*
1528217 GAAAGGCGACAAACAAACTAAAGGTAAAAAAGTGTCCAGGGTTAAACCGACAACT
196 CAAAGGCGACAAACAAACTAAAGGTAAAAAAGTGTCCAGGGTTAAACCGACAACT
* *
1528272 AGACTAAAGGTAAGGAAGTCTCTTA-GGTCAAG-CTGATAGGAAAATAAAAAGTAA-GAAAGTCG
1 AGACTAAAGGTAAGGAAGTCTC-TAGGGTCAAGTC-GACAGGAAAACAAAAAGTAAGGAAA-TC-
* *
1528334 T-TAGGGTCAAAGCCGATAAGCAGACTAAAGGTAAAGAAGTTTCTAAGGTCAAAGTCGACAAGCA
62 TCCAAGGTCAAAGCCGATAAGCAGACTAAAGGTAAAGAAGTTTCTAAGGTCAAAGTCGACAAGCA
* * ** *
1528398 AAGTAAAGGTAAGAAAGTCTCAAGGGTCAAAGTCGATAGGCAAACTAAGTGTAAAGAAGTCTCTA
127 AACTAAAGGTAAGAAAGTCTCAAGGGTCAAAGTCGACAGGCAAACTAAAAGTAAAGAAGTCTCCA
1528463 AGGTCAAAG
192 AGGTCAAAG
1528472 CCAATAGGCA
Statistics
Matches: 173, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
249 5 0.03
250 165 0.95
251 3 0.02
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.18
Consensus pattern (250 bp):
AGACTAAAGGTAAGGAAGTCTCTAGGGTCAAGTCGACAGGAAAACAAAAAGTAAGGAAATCTCCA
AGGTCAAAGCCGATAAGCAGACTAAAGGTAAAGAAGTTTCTAAGGTCAAAGTCGACAAGCAAACT
AAAGGTAAGAAAGTCTCAAGGGTCAAAGTCGACAGGCAAACTAAAAGTAAAGAAGTCTCCAAGGT
CAAAGGCGACAAACAAACTAAAGGTAAAAAAGTGTCCAGGGTTAAACCGACAACT
Found at i:1528959 original size:90 final size:89
Alignment explanation
Indices: 1528785--1528968 Score: 199
Period size: 90 Copynumber: 2.1 Consensus size: 89
1528775 ATAGGCAGAC
* * * * *
1528785 TAAGGGTAAGGAAGCCTCCAAGGCCAAAGCCAATAGGTAGACTAAAGGAAAGGAAGTTTCTAAGG
1 TAAGGGTAAAGAAGCCTCCAAGGCCAAAGCCAACAGGTAGACTAAAGGAAAGAAAGTATCCAAGG
*
1528850 TCAAAGTCGACAGACAGACTATAAG
66 TCAAAGTCAACAGACAGACTA-AAG
* * ** *
1528875 TAAGGGTAAAGAAGTCTCCAAGGTCAAAGCTGACAGGTAGACTTAAGGTAAA-AAAGTATCCAAG
1 TAAGGGTAAAGAAGCCTCCAAGGCCAAAGCCAACAGGTAGACTAAAGG-AAAGAAAGTATCCAAG
* * ** *
1528939 GTGAAAGTTAACAGGTAGACTAAGG
65 GTCAAAGTCAACAGACAGACTAAAG
1528964 TAAGG
1 TAAGG
1528969 AAGTCTACAA
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
89 7 0.09
90 67 0.87
91 3 0.04
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.17
Consensus pattern (89 bp):
TAAGGGTAAAGAAGCCTCCAAGGCCAAAGCCAACAGGTAGACTAAAGGAAAGAAAGTATCCAAGG
TCAAAGTCAACAGACAGACTAAAG
Found at i:1530572 original size:257 final size:257
Alignment explanation
Indices: 1530184--1530904 Score: 874
Period size: 257 Copynumber: 2.8 Consensus size: 257
1530174 TAATAGGAAA
* * * * *
1530184 ACTAAAGGTAAGGAAGTCTCC-ATGATCAAA-CTCAACAGGCAGAGTAAAGATTAAGGATAAGAG
1 ACTAAGGGTAAAGAAGTCTCCAAAG-TCAAAGC-CGACAGGCAGACTAAAGATTAAGG-TAAGA-
* * *
1530247 AGTCTTTAGGGACAAAATTGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGGTCAAAGCTAACA
62 AGTCTTTAGGGTCAAAATCGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGGTCAAAGCCAACA
1530312 AGCAGACTAAAGGTAAGGAAGTCTCTAAGGCTAAAGTCGATAGGCAGACT-AGGGATAAAGAAGT
127 AGCAGACTAAAGGTAAGGAAGTCTCTAAGGCTAAAGTCGATAGGCAGACTAAGGG-TAAAGAAGT
* * * * * * * *
1530376 TTTCAAGGTCAAACCCGAGAAGCAAACTTAAGATAAAGAAGTTTCTAGGCTCAAAGTAGACAAGC
191 ATCCAAGGTCAAACCCGACAAGCAAACTAAACATAAAGAAGTTTCCAAGCTCAAAGCAGACAAGC
1530441 AG
256 AG
* * *
1530443 A-TAAGGGTAAAGAAGTCTCTAGAGTCAAAGCCGACAGGCAGACTAAAAATTAAGTGTAAGAAGT
1 ACTAAGGGTAAAGAAGTCTCCAAAGTCAAAGCCGACAGGCAGACTAAAGATTAAG-GTAAGAAGT
*
1530507 CTTTAGGGTCAAAATCGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGATCAAAGCCAACAAGC
65 CTTTAGGGTCAAAATCGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGGTCAAAGCCAACAAGC
* * * * *
1530572 AGACAAAAGGTAAGGAAGTCTTTAGGGCTAAAGTCAATAGGCAGACTAAGGGTAAGGAAGTATCC
130 AGACTAAAGGTAAGGAAGTCTCTAAGGCTAAAGTCGATAGGCAGACTAAGGGTAAAGAAGTATCC
* * * *
1530637 AAGGTCAAAGCCGACAAGCAGACTAAACATAAAGAAGTTTCCAAGCTTAAAGCCGACAAGCAG
195 AAGGTCAAACCCGACAAGCAAACTAAACATAAAGAAGTTTCCAAGCTCAAAGCAGACAAGCAG
* * *
1530700 ACTAAGGGTAAAGAAGTCTCCAAAGTCAAAGCTGTCAGGCGGACTAAAGATTAAGGGTAAGAAAG
1 ACTAAGGGTAAAGAAGTCTCCAAAGTCAAAGCCGACAGGCAGACTAAAGATTAA-GGTAAG-AAG
* * ** * * ** * * *
1530765 TCTTCAAGGTCAATGTCGATAGGCAAACTACGGGTAAAAAAGTTTTTAAGGTTAAAGCCGACAAA
64 TCTTTAGGGTCAAAATCGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGGTCAAAGCCAACAAG
* * * * * * * * *
1530830 CACACTAAAGGTAAGGAAGCCTCTAAGGCCAAAGTTGACAGACAAACTAAGGGTAAAAAAGTCTC
129 CAGACTAAAGGTAAGGAAGTCTCTAAGGCTAAAGTCGATAGGCAGACTAAGGGTAAAGAAGTATC
1530895 CAAGGTCAAA
194 CAAGGTCAAA
1530905 GTTGGCGAGC
Statistics
Matches: 394, Mismatches: 61, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
257 171 0.43
258 101 0.26
259 122 0.31
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (257 bp):
ACTAAGGGTAAAGAAGTCTCCAAAGTCAAAGCCGACAGGCAGACTAAAGATTAAGGTAAGAAGTC
TTTAGGGTCAAAATCGATAGGCAGACTAAGGGTAAAAAAGTTTCCAAGGTCAAAGCCAACAAGCA
GACTAAAGGTAAGGAAGTCTCTAAGGCTAAAGTCGATAGGCAGACTAAGGGTAAAGAAGTATCCA
AGGTCAAACCCGACAAGCAAACTAAACATAAAGAAGTTTCCAAGCTCAAAGCAGACAAGCAG
Found at i:1535875 original size:42 final size:42
Alignment explanation
Indices: 1535769--1535879 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
1535759 AGTCTCTTGA
** *
1535769 GTCAAAGCTGACAGGCAAACTAAGGGTAAAATAGTCTCCAAG
1 GTCAAAGCTGACAAACAAACTAAAGGTAAAATAGTCTCCAAG
* ** *
1535811 TTCAAAGCTGACAGGCAGACTAAAGGTAAGAA-AGTCTCCAAG
1 GTCAAAGCTGACAAACAAACTAAAGGTAA-AATAGTCTCCAAG
* *
1535853 GTCAAAGTTGATAAACAAACTAAAGGT
1 GTCAAAGCTGACAAACAAACTAAAGGT
1535880 TATTGAAAGC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 57 0.97
43 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (42 bp):
GTCAAAGCTGACAAACAAACTAAAGGTAAAATAGTCTCCAAG
Found at i:1536665 original size:13 final size:13
Alignment explanation
Indices: 1536647--1536672 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1536637 CATTTTGGGA
1536647 TGTATCGATACAT
1 TGTATCGATACAT
1536660 TGTATCGATACAT
1 TGTATCGATACAT
1536673 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1536670 original size:33 final size:32
Alignment explanation
Indices: 1536627--1536690 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
1536617 TACAAGCCAA
* *
1536627 TGTATTGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
* *
1536660 TGTATCGATACATCTTGTGTGTATTGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
1536691 AACAGTTAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:1536778 original size:21 final size:21
Alignment explanation
Indices: 1536732--1536785 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
1536722 GCCAATCACC
1536732 TGTATCGATACATTCTTAACA
1 TGTATCGATACATTCTTAACA
* **
1536753 AGTATCGATACATT-TTGGTCA
1 TGTATCGATACATTCTT-AACA
1536774 TGTATCGATACA
1 TGTATCGATACA
1536786 ATGTATCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATCGATACATTCTTAACA
Found at i:1538802 original size:20 final size:22
Alignment explanation
Indices: 1538763--1538805 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
1538753 GCTATGAGTG
*
1538763 TGGGGGCTGCCCGGTTGCGACC
1 TGGGGGCTGCCCGGTCGCGACC
1538785 TGGGGG-TG-CCGGTCGCGACC
1 TGGGGGCTGCCCGGTCGCGACC
1538805 T
1 T
1538806 TGTGAGTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 2 0.10
22 6 0.30
ACGTcount: A:0.05, C:0.30, G:0.47, T:0.19
Consensus pattern (22 bp):
TGGGGGCTGCCCGGTCGCGACC
Found at i:1539268 original size:13 final size:13
Alignment explanation
Indices: 1539250--1539287 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1539240 ATAAACCCTT
*
1539250 TGTATCGATACAC
1 TGTATCGATACAA
1539263 TGTATCGATACAA
1 TGTATCGATACAA
1539276 TGTATCGATACA
1 TGTATCGATACA
1539288 GAGAATGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1541744 original size:10 final size:10
Alignment explanation
Indices: 1541725--1541755 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1541715 ATCTCATTTT
1541725 TCACTGTTCA
1 TCACTGTTCA
*
1541735 TCACTATTCA
1 TCACTGTTCA
1541745 TCACTGTTCA
1 TCACTGTTCA
1541755 T
1 T
1541756 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:1541777 original size:21 final size:22
Alignment explanation
Indices: 1541743--1541798 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
1541733 CATCACTATT
1541743 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1541765 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1541786 CATCACTGTTCAT
1 CATCACTGTTCAT
1541799 CATTGTTACT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1541798 original size:53 final size:54
Alignment explanation
Indices: 1541733--1541916 Score: 164
Period size: 53 Copynumber: 3.3 Consensus size: 54
1541723 TTTCACTGTT
*
1541733 CATCACTATTCATCACTGTTCATGTATCGATACATCACT-TTCATGTATCGATA
1 CATCACTGTTCATCACTGTTCATGTATCGATACATCACTATTCATGTATCGATA
* *
1541786 CATCACTGTTCATCATTGTT-ACTGTTCATACTATTCACGTATCACTATTCATGTATCGATAA
1 CATCACTGTTCATCACTGTTCA-TG-T-AT-CGA-T-AC--ATCACTATTCATGTATCGAT-A
* * **
1541848 TAATCACTGTTCATCACTATTCATGTATCGAT--A-CACTATAAATAGTATCGATA
1 -CATCACTGTTCATCACTGTTCATGTATCGATACATCACTATTCAT-GTATCGATA
1541901 CATCACTGTTCA-CACT
1 CATCACTGTTCATCACT
1541917 ATTTAATAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 28
0.74 0.07 0.19
Matches are distributed among these distances:
51 4 0.04
52 12 0.11
53 29 0.27
54 10 0.09
55 2 0.02
56 2 0.02
57 1 0.01
58 2 0.02
59 1 0.01
60 8 0.07
61 15 0.14
62 2 0.02
63 19 0.18
64 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (54 bp):
CATCACTGTTCATCACTGTTCATGTATCGATACATCACTATTCATGTATCGATA
Found at i:1541869 original size:34 final size:34
Alignment explanation
Indices: 1541765--1541880 Score: 115
Period size: 34 Copynumber: 3.6 Consensus size: 34
1541755 TGTATCGATA
*
1541765 CATCACT-TTCATGTATCGAT-A-CATCACTGTT
1 CATCACTATTCATGTATCGATAATAATCACTGTT
* * * *
1541796 CATCATTGTT-ACTGT-TC-ATACTATTCAC-G-T
1 CATCACTATTCA-TGTATCGATAATAATCACTGTT
1541826 -ATCACTATTCATGTATCGATAATAATCACTGTT
1 CATCACTATTCATGTATCGATAATAATCACTGTT
1541859 CATCACTATTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
1541881 CACTATAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
29 10 0.15
30 6 0.09
31 19 0.28
32 10 0.15
33 1 0.01
34 21 0.31
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (34 bp):
CATCACTATTCATGTATCGATAATAATCACTGTT
Found at i:1544106 original size:84 final size:84
Alignment explanation
Indices: 1543946--1544106 Score: 186
Period size: 84 Copynumber: 1.9 Consensus size: 84
1543936 ACTCAAAGAA
* * *
1543946 GAAAATAAATCAATAAGTGTAGAGAATCATATTCTTGAAAAAAAATTAAGTGAATTAGAGAAGAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTGAAAAAAAAATAAATGAATTAGAGAAGAG
* *
1544011 TATGAAAGAGTTACAAAAT
66 AAAGAAAGAGTTACAAAAT
* * *
1544030 GAAAATAAATCAATGAGTTTAGAAAAT-A-ATTCTTTTAAAAAGAAAATAAATGAATT--AGAAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTC-TTGAAAAA-AAAATAAATGAATTAGAGAAG
1544091 AGAAAAGAAATGAGTT
64 AG-AAAGAAA-GAGTT
1544107 GCAAGTCGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
82 11 0.17
83 13 0.20
84 41 0.63
ACGTcount: A:0.54, C:0.04, G:0.17, T:0.25
Consensus pattern (84 bp):
GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTGAAAAAAAAATAAATGAATTAGAGAAGAG
AAAGAAAGAGTTACAAAAT
Found at i:1545636 original size:13 final size:13
Alignment explanation
Indices: 1545618--1545642 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1545608 TTTTCCAGAT
1545618 TGTATCGATACAA
1 TGTATCGATACAA
1545631 TGTATCGATACA
1 TGTATCGATACA
1545643 TTACTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Done.