Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3053563
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 20
Found at i:1547434 original size:10 final size:10
Alignment explanation
Indices: 1547415--1547445 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1547405 ATCTCATTTT
1547415 TCACTGTTCA
1 TCACTGTTCA
*
1547425 TCACTATTCA
1 TCACTGTTCA
1547435 TCACTGTTCA
1 TCACTGTTCA
1547445 T
1 T
1547446 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:1547467 original size:21 final size:22
Alignment explanation
Indices: 1547433--1547488 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
1547423 CATCACTATT
1547433 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1547455 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1547476 CATCACTGTTCAT
1 CATCACTGTTCAT
1547489 CATTGTTACT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1547488 original size:53 final size:54
Alignment explanation
Indices: 1547423--1547606 Score: 164
Period size: 53 Copynumber: 3.3 Consensus size: 54
1547413 TTTCACTGTT
*
1547423 CATCACTATTCATCACTGTTCATGTATCGATACATCACT-TTCATGTATCGATA
1 CATCACTGTTCATCACTGTTCATGTATCGATACATCACTATTCATGTATCGATA
* *
1547476 CATCACTGTTCATCATTGTT-ACTGTTCATACTATTCACGTATCACTATTCATGTATCGATAA
1 CATCACTGTTCATCACTGTTCA-TG-T-AT-CGA-T-AC--ATCACTATTCATGTATCGAT-A
* * **
1547538 TAATCACTGTTCATCACTATTCATGTATCGAT--A-CACTATAAATAGTATCGATA
1 -CATCACTGTTCATCACTGTTCATGTATCGATACATCACTATTCAT-GTATCGATA
1547591 CATCACTGTTCA-CACT
1 CATCACTGTTCATCACT
1547607 ATTTAATAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 28
0.74 0.07 0.19
Matches are distributed among these distances:
51 4 0.04
52 12 0.11
53 29 0.27
54 10 0.09
55 2 0.02
56 2 0.02
57 1 0.01
58 2 0.02
59 1 0.01
60 8 0.07
61 15 0.14
62 2 0.02
63 19 0.18
64 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (54 bp):
CATCACTGTTCATCACTGTTCATGTATCGATACATCACTATTCATGTATCGATA
Found at i:1547559 original size:34 final size:34
Alignment explanation
Indices: 1547455--1547570 Score: 115
Period size: 34 Copynumber: 3.6 Consensus size: 34
1547445 TGTATCGATA
*
1547455 CATCACT-TTCATGTATCGAT-A-CATCACTGTT
1 CATCACTATTCATGTATCGATAATAATCACTGTT
* * * *
1547486 CATCATTGTT-ACTGT-TC-ATACTATTCAC-G-T
1 CATCACTATTCA-TGTATCGATAATAATCACTGTT
1547516 -ATCACTATTCATGTATCGATAATAATCACTGTT
1 CATCACTATTCATGTATCGATAATAATCACTGTT
1547549 CATCACTATTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
1547571 CACTATAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
29 10 0.15
30 6 0.09
31 19 0.28
32 10 0.15
33 1 0.01
34 21 0.31
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (34 bp):
CATCACTATTCATGTATCGATAATAATCACTGTT
Found at i:1552465 original size:19 final size:19
Alignment explanation
Indices: 1552441--1552535 Score: 88
Period size: 19 Copynumber: 5.6 Consensus size: 19
1552431 TACAAGCCAA
1552441 TGTATCGATACATCTTGTG
1 TGTATCGATACATCTTGTG
1552460 TGTATCGATACA-----T-
1 TGTATCGATACATCTTGTG
*
1552473 TATATCGATACATCTTGTG
1 TGTATCGATACATCTTGTG
1552492 TGTATCGATACA-----T-
1 TGTATCGATACATCTTGTG
1552505 TGTATCGATACATCTTGTG
1 TGTATCGATACATCTTGTG
*
1552524 TGTATCAATACA
1 TGTATCGATACA
1552536 AACAGTTAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 24
0.69 0.03 0.27
Matches are distributed among these distances:
13 23 0.38
14 2 0.03
18 2 0.03
19 34 0.56
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATCTTGTG
Found at i:1552484 original size:32 final size:32
Alignment explanation
Indices: 1552443--1552535 Score: 168
Period size: 32 Copynumber: 2.9 Consensus size: 32
1552433 CAAGCCAATG
1552443 TATCGATACATCTTGTGTGTATCGATACATTA
1 TATCGATACATCTTGTGTGTATCGATACATTA
*
1552475 TATCGATACATCTTGTGTGTATCGATACATTG
1 TATCGATACATCTTGTGTGTATCGATACATTA
*
1552507 TATCGATACATCTTGTGTGTATCAATACA
1 TATCGATACATCTTGTGTGTATCGATACA
1552536 AACAGTTAAG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (32 bp):
TATCGATACATCTTGTGTGTATCGATACATTA
Found at i:1552510 original size:13 final size:13
Alignment explanation
Indices: 1552492--1552517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1552482 ACATCTTGTG
1552492 TGTATCGATACAT
1 TGTATCGATACAT
1552505 TGTATCGATACAT
1 TGTATCGATACAT
1552518 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1552635 original size:13 final size:13
Alignment explanation
Indices: 1552617--1552641 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1552607 ACATTTGGTC
1552617 ATGTATCGATACA
1 ATGTATCGATACA
1552630 ATGTATCGATAC
1 ATGTATCGATAC
1552642 TATGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1553059 original size:42 final size:42
Alignment explanation
Indices: 1553010--1553090 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
1553000 GAATCAGGGT
* *
1553010 CAAAGCTGATAG-GCAAACTAAAGGTAAGGAAGTTTCCAAGGC
1 CAAAGCTGATAGAGC-AACTAAAAGTAAGGAAGTCTCCAAGGC
*
1553052 CAAAGCTGATAGATCAACTAAAAGTAAGGAAGTCTCCAA
1 CAAAGCTGATAGAGCAACTAAAAGTAAGGAAGTCTCCAA
1553091 AGTTAATGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (42 bp):
CAAAGCTGATAGAGCAACTAAAAGTAAGGAAGTCTCCAAGGC
Found at i:1553187 original size:42 final size:42
Alignment explanation
Indices: 1553141--1554346 Score: 208
Period size: 42 Copynumber: 28.5 Consensus size: 42
1553131 AATCTCCATG
* *
1553141 GTCAAAATCGATAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * * **
1553183 GTCAAAGCCGACAAGCAGATTAAAGGTAAGGAAGTCTCCAGG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * **
1553225 GTCAAAGTCGAGAGGCAAACTAAGGGTAAAAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * ** * *
1553267 GTCAAA-ACTAACCA-GCATACTAAATGTGTGGA-AAGTCTCCAAG
1 GTCAAAGTC-GA-CAGGCAGACT-AA-GGGTAAAGAAGCCTCCAAA
* * ** **
1553310 GTCAAAGTCGATAGGAAGACTAAAGACTATGGGT-AAGAGAGTGTCCATG
1 GTCAAAGTCGACA-G--G-C---AGACTAAGGGTAAAGA-AGCCTCCAAA
* * * * * * *
1553359 GCCAAAGTCAATAGGTAGACTAAGGGTAAAAAAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * ** * *
1553401 GTCAAAG-CTGACCGGCAGACTAAAGGTATGGAAGTCTCCAAT
1 GTCAAAGTC-GACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * ** **
1553443 TTCAAAGTCGACGGGCAAACTAAAGGTAAAGAAGTGTCCATC
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * * **
1553485 GTTAAAGTCGACAAGCAAACTAAAGGTAAA-AAACTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGC-CTCCAAA
* * * * ** ** **
1553527 GTCTAAGTCGACAGGCAGACGAAAGGTAAAAAAGTTTTTAGG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * *
1553569 GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGCCTCTAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * *
1553611 GTCAAAGTCGATAGGCAAACTATAGGTAAGGGTAAAGAAGTCTACAAG
1 GTCAAAGTCGACAGGCAGAC------TAAGGGTAAAGAAGCCTCCAAA
* * * * * * *
1553659 GTCAAAGCCGACAGACAGACTAAAGGTAAAAAAGTCT-CTAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * *
1553700 GGCTAAAGTCGACAGGCACACTAA-GGTAAAGAAGTCTCCAAG
1 GTC-AAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * *
1553742 GTCAAAATCGACAGGCAGACTAAAGATAAAGAAGTCTCTAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * *
1553784 GTCAAAG-CATATAAGCAGACTAAAGGTAAA-AAGTCT-CAAA
1 GTCAAAGTC-GACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * ** * * * *
1553824 GGTCAAAGCCAACAGGCAGACTAAATGTAAAGATGTCT-CTAG
1 -GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * ** **
1553866 GATCAAAGTCGATAAGTAGACAAAAAGTAAAGAA-CTCTCCAGG
1 G-TCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGC-CTCCAAA
* * * * *
1553909 GTCAAAGTCGATAGGCAGATTAA-GGT-AAGAAAGTCTCGAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAG-AAGCCTCCAAA
* * * * * * **
1553950 GTCAAAGCCGACAAGG-AGACTAAAGATAAGGAAGTCTCTAGG
1 GTCAAAGTCGAC-AGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * ** * *
1553992 GTCAAAGT-GAACAAGCAGACTAAAGATAAAAAAGTTTTCAAG
1 GTCAAAGTCG-ACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * * **
1554034 GTCAAAGCCAACAAGCAGACTAAGGAT-AAGGAGTCC-CTAGG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAG-CCTCCAAA
* ** *** * *
1554075 GTCAAAGTCGACAAGTTGACTAAGGGTAAA-ATAATTTCTAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGA-AGCCTCCAAA
* * * * * * * *
1554117 GCCAAAGCCAATAGGCAGACTAAAGGTAAGGAAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * * *
1554159 GTAAAAGTTGACAGACATACTAAAGGT-AAGAAAGCCTCTAAG
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAG-AAGCCTCCAAA
* ** * * * *
1554201 GTC-AAGTCGACAGGCAGACAAAAAGTAAGGAAGTCTTCAAT
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * ** *
1554242 GTCAAAGTCGATAGGTAAACTAAAGGTAAAAAAGTTTCAAAA
1 GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
* * * * * * **
1554284 GTCAAAG-CTAACAGGCAAACTAAAGGTAAAAAAGTCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
*
1554326 GTCAAAGTCGACAGGTAGACT
1 GTCAAAGTCGACAGGCAGACT
1554347 GCAGACTAAG
Statistics
Matches: 871, Mismatches: 239, Indels: 108
0.72 0.20 0.09
Matches are distributed among these distances:
40 5 0.01
41 158 0.18
42 605 0.69
43 32 0.04
44 5 0.01
46 2 0.00
47 2 0.00
48 38 0.04
49 20 0.02
50 4 0.00
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
GTCAAAGTCGACAGGCAGACTAAGGGTAAAGAAGCCTCCAAA
Found at i:1553271 original size:84 final size:84
Alignment explanation
Indices: 1553123--1561648 Score: 3231
Period size: 84 Copynumber: 100.2 Consensus size: 84
1553113 AAAGATTATG
* * * * * * *
1553123 GGTAAGAGAA-TCTCCATGGTCAAAATCGATAGGCAGACTAAGGGTAAAGAAGCCTCCAAAGTCA
1 GGTAA-AGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
*
1553187 AAGCCGACAAGCAGATTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * *
1553207 GGTAAGGAAGTCTCCAGGGTCAAAGTCGAGAGGCAAACTAAGGGTAAAAAAGTCTCTAGGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* ** * *
1553272 AACTAACCAGCATACTAAA
66 AGCCGACAAGCAGACTAAA
** * * * *
1553291 TGTGTGGA-AAGTCTCCAAGGTCAAAGTCGATAGGAAGACTAAAGACTATGGGTAAGAGAGTGTC
1 -G-GTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAG-GTA-----AAGA-AGTCTC
* * * * * * * * *
1553355 CATGGCCAAAGTCAATAGGTAGACTAAG
57 TAAGGTCAAAGCCGACAAGCAGACTAAA
* * ** * **
1553383 GGTAAAAAAGTCTCCAAGGTCAAAG-CTGACCGGCAGACTAAAGGTATGGAAGTCTCCAATTTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* ** *
1553447 AAGTCGACGGGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* ** * * * * * * *
1553467 GGTAAAGAAGTGTCCATCGTTAAAGTCGACAAGCAAACTAAAGGTAAAAAACTCTCTAGGGTCTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* * *
1553532 AGTCGACAGGCAGACGAAA
66 AGCCGACAAGCAGACTAAA
* * ** * * * * *
1553551 GGTAAAAAAGTTTTTAGGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGCCTCTAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* * * *
1553616 AGTCGATAGGCAAACTATAGGTAA
66 AGCCGACAAGCAGAC--TA---AA
* * * * *
1553640 GGGTAAAGAAGTCTACAAGGTCAAAGCCGACAGACAGACTAAAGGTAAAAAAGTCTCT-AGGGCT
1 -GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC-
* * *
1553704 AAAGTCGACAGGCACACT-AA
64 AAAGCCGACAAGCAGACTAAA
* *
1553724 GGTAAAGAAGTCTCCAAGGTCAAAATCGACAGGCAGACTAAAGATAAAGAAGTCTCTAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
** *
1553789 AGCATATAAGCAGACTAAA
66 AGCCGACAAGCAGACTAAA
* * * * *
1553808 GGTAAA-AAGTCTCAAAGGTCAAAGCCAACAGGCAGACTAAATGTAAAGATGTCTCT-AGGATCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGG-TCA
* * * *
1553871 AAGTCGATAAGTAGACAAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * *
1553891 AGTAAAGAACTCTCCAGGGTCAAAGTCGATAGGCAGA-TTAAGGT-AAGAAAGTCTCGAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCA
*
1553954 AAGCCGACAAGGAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * *
1553974 GATAAGGAAGTCTCTAGGGTCAAAGT-GAACAAGCAGACTAAAGATAAAAAAGT-TTTCAAGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCG-ACAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTC
*
1554037 AAAGCCAACAAGCAGACT-AA
64 AAAGCCGACAAGCAGACTAAA
* * * ** * * * *
1554057 GG-ATAAGGAGTC-CCTAGGGTCAAAGTCGACAAGTTGACTAAGGGTAAA-ATAATTTCTAAGGC
1 GGTA-AAGAAGTCTCC-AAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGA-AGTCTCTAAGGT
* * *
1554119 CAAAGCCAATAGGCAGACTAAA
63 CAAAGCCGACAAGCAGACTAAA
* * * * * *
1554141 GGTAAGGAAGTCTCCAAGGTAAAAGTTGACAGACATACTAAAGGT-AAGAAAGCCTCTAAGGTC-
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCA
* * *
1554204 AAGTCGACAGGCAGACAAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * * * * *
1554224 AGTAAGGAAGTCTTCAATGTCAAAGTCGATAGGTAAACTAAAGGTAAAAAAGTTTCAAAAGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
** * *
1554289 AGCTAACAGGCAAACTAAA
66 AGCCGACAAGCAGACTAAA
* * * * * *
1554308 GGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGTAGACTGCAGACTAAGGGT-AAGAAAGTATCC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGAC----AG---GCAGACTAAAGGTAAAG-AAGTCTCT
* * * * * *
1554372 AGGGTTAAAGCTGATAGGCAGACTAAG
58 AAGGTCAAAGCCGACAAGCAGACTAAA
* * * * * * * * * * *
1554399 GGCAAAGAAGTTTCTAAGATCAAAGCCGACAAGCAAACTAAAGGTAAGGAAGTCACTAGGGTTAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* * * *
1554464 AGTC-AGTAGGCAGACTAAT
66 AGCCGA-CAAGCAGACTAAA
* * * * ** *
1554483 GGTAAAGAAGTCTCCAAGGACAAAGCCGACTGGCAAACTAAAGGTATGGAAGTCTCT-AGTGTCG
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCA
** * * *
1554547 AAGTTGGCAGGTAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * ** * * *
1554567 GGTAAAAAAATCTCTAGGGTTAAAGCCAACACACAGGCTAAAGGTAAGGAAGTCT-TCAGTGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCA
* * * *
1554631 AAGCTGATAGGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
** * * * * * * * * * *
1554651 AATAAGGAAGT-TTCAAGGGCCAAAGTTGATAAGAAAACTAAAGGTAAAGAAGTCTCCAAGATCA
1 GGTAAAGAAGTCTCCAA-GGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * * *
1554715 AGGCTGATAAGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* ** * * * *
1554735 GGT-GAGAAAGTCTATAAGGTCAAAATCGATA-GCTAGACTACAAGTAAAGGCAAAGAAGTCTCA
1 GGTAAAG-AAGTCTCCAAGGTCAAAGTCGACAGGC-AG---AC---TAAAGGTAAAGAAGTCTCT
* *
1554798 AAGGTCAAAGTCGACAGGCAGACTAAA
58 AAGGTCAAAGCCGACAAGCAGACTAAA
* * * * * *
1554825 AGTAAAAAAAGTCT-CAAGGGT-AATA-ACAAACAGGCAGACT-ATGGT-AAGAAAGTCTCTATG
1 GGT-AAAGAAGTCTCCAA-GGTCAA-AGTC-GACAGGCAGACTAAAGGTAAAG-AAGTCTCTAAG
1554885 GTCAAAGCCGACAAGCAGACTAAA
61 GTCAAAGCCGACAAGCAGACTAAA
* * * * * *** * * *
1554909 GATAAAGAAGTGTCCAAGGTCGAAG-CAAAAAAATAGAGTAAAGGTAAAAAAGTCTCCAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* *
1554973 AAGCCAACAAGCAGACTAAG
65 AAGCCGACAAGCAGACTAAA
* * * * * * * * * * * *
1554993 GGTAAAAAAGTCTCTAAGTTTAAAG-CTAACAAGCAAACTGAGGGTGAAA-TAGCCT-TCAGCGT
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGT-AAAGAAGTCTCTAAG-GT
*
1555055 CAAAGCCGACAAGCAAACTAAA
63 CAAAGCCGACAAGCAGACTAAA
* * * * * * *
1555077 GGTAAGGAAGTCTCCAAAGTCAAAGCCGATAGGCAGACTAAAGGTAAGGAA-TCTCCAAGGTCTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
** * * * * *
1555141 AGATGGCAGGCAAATTGAA
66 AGCCGACAAGCAGACTAAA
* * * * * ** * * *
1555160 GGTAAGGAAATTTTCAAGGTCAAAGCCGACAGAAAAACTAATGGTAAAGAAGTCACTAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
** * *
1555225 AGTTTATAGGCAAACTAAAGACTAAA
66 AG----CCGACAAGC---AGACTAAA
* * * * * * *
1555251 GAT-AAGAAAGTCTCCAGGGACAAAG-CTGATAGGTAGACTAAGGGTAAAGAAGTCTCTATGGTC
1 GGTAAAG-AAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC
* * **
1555314 AAAGCTGATAAATAGACTAAA
64 AAAGCCGACAAGCAGACTAAA
* * * * * ** *
1555335 GGTTAGGATGTCTCTAAGGTCAAAGTGGACA-GCAAGACTAGGGGTAAAGAAGTCTCTAGGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGC-AGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * *
1555399 AAGCTGACAGGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
*** * * * * * *
1555419 GGTGTGGAAGTCTCC-AGTGTCAAAGCCAATAGGCAGACTAAAGGTAAAGAAGTCTCCAGGGTTA
1 GGTAAAGAAGTCTCCAAG-GTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * *
1555483 AAGCCAATAAGTAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * * *
1555503 GGTAAGGAAGTCTCCAAGGTTAAAGTCAATAGGTAGACTAAAGGTAAGGAAGTTTTTAGGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* * * *
1555568 AACCGATAGGCAAACTAAA
66 AGCCGACAAGCAGACTAAA
* * * ** * *
1555587 GGTAAAGAAGTCTCTATA-GTCAAAGCCGACAGGTAGACTAAAGGTAGGGAAGTCTCCAAAGTCA
1 GGTAAAGAAGTCTCCA-AGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
*
1555651 AAGCCGACAAGTAGACAACTAGTAA
65 AAGCCGACAAGCAG---ACTA--AA
* * * * *
1555676 GGGTAAAGAAGTCTCTAAGGTTAAAGTCGATAGGTAGACTAAAGGTAAAAAAGTCT-TCAAGGTC
1 -GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTC
* *
1555740 AAAGCCAACAAGCAGACT-AG
64 AAAGCCGACAAGCAGACTAAA
* * * * * * * *
1555760 GGTAAAAAAGTCTCCAAGGTCAAAGCCGATAAGCAGACTATAGATAAGGAAGTCT-TCAAAGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCA
**
1555824 AA-ATGAACAAGCAGACTAAA
65 AAGCCG-ACAAGCAGACTAAA
* * * * * * * *
1555844 GGTAAAAAAGTCTCTAAGGTCGAAA-CCAACAAGCTGACTAAGGGTAAGGAAGTCTCTAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTC-AAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * * *
1555908 AAGCTGACGAGCAAACAAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * * * *
1555928 AGTAAAGAAGTTTCTAGGGTCAAAGCCTACAGGTAGACTAAAGGTAAGGAAGTTTCCAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* ** * *
1555993 AACCGATGAGTAAACTAAA
66 AGCCGACAAGCAGACTAAA
* * * * * * *
1556012 GGCAAAGAGGTTTCTAAGGTCAAAGTCGATAGGCAGACTAAAGACTAAGGGTAAAAAAGTCTCCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACT----A--AA-GGTAAAGAAGTCTCTA
* ** * *
1556077 TGGTCAAAGCTAAAAAGCAGACTAAG
59 AGGTCAAAGCCGACAAGCAGACTAAA
* * * * * **
1556103 GGCAAAAAAAGTCTCTAAGGTCAAAGCCGAAAAACAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
1 GG-TAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* ** * * * * *
1556168 TATTCGACAGGTAAATTAAC
65 AAGCCGACAAGCAGACTAAA
* * *
1556188 GGTAAATAAGTCTTCAAGGTCAAAG-CTGACAGGTCAGACTAAAGGTATAGAAGTCTCT-AGTGT
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGG-CAGACTAAAGGTAAAGAAGTCTCTAAG-GT
* * *
1556251 CAAAACTGACAGGCAGACTAAA
63 CAAAGCCGACAAGCAGACTAAA
* * * * * *
1556273 GGTAAAGAAGTCT-CTAGGTTCAAAGTCGATC-GACAGAGT-AAGGTAAGGAAATCT-TTAGTGT
1 GGTAAAGAAGTCTCCAAGG-TCAAAGTCGA-CAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GT
* * *
1556334 CAAAGCTGACAAGTAGTCTAAA
63 CAAAGCCGACAAGCAGACTAAA
* * * * * * *
1556356 GGCTAAGGGTATTAAAGTCTCTAAGGTCAAAGCCGATAGGTAGACTAAATGTAAA-AATGT-TTT
1 GG-TAA----A--GAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAA-GTCTCT
* * * *
1556419 CAAGGTCCAATCTGACAAGTAGACTAAA
58 -AAGGTCAAAGCCGACAAGCAGACTAAA
** * * * * * *
1556447 GGT-GTGAAAGCCTCCAAGGTTAAAGTCGACAAGAAGACTAAAGGTAAAGGAAGTCTCCAAGGTT
1 GGTAAAG-AAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAA-GAAGTCTCTAAGGTC
* * *
1556511 AAAGCCAACAGGCAGATTAAA
64 AAAGCCGACAAGCAGACTAAA
** * * *
1556532 GGTATGGAAG-C-CTATAGGATCAAAGTCGACAGGCAAACTAAAGGTAAA-AAGGTCTCTAGGGT
1 GGTAAAGAAGTCTCCA-AGG-TCAAAGTCGACAGGCAGACTAAAGGTAAAGAA-GTCTCTAAGGT
* * * *
1556594 TATAGTCGACAGGCAGACTAAA
63 CAAAGCCGACAAGCAGACTAAA
* * * * * *
1556616 GGTAAGGAAGTCT-CAAGGTCAAAGTAGATAGGCAGACTAGAGGTAAGGAAGTCTCTAGGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* *
1556680 AG-CGCACAAACAAACTAAA
66 AGCCG-ACAAGCAGACTAAA
* * * * * * * * *
1556699 GGTAAGGAAGTCTCCAAGGTCAATG-CCAGCAGGCAAACTAAAGGTAAGGAACTTTCCAAGGTTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGA-CAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
** * * *
1556763 AAATCGAGAGGCAAACTATAAGTTA
65 AAGCCGACAAGCAGAC--TAA---A
* ** * * * * *
1556788 GGGTAAAAAAGTAGCCAAGGCCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTTA
1 -GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * *
1556853 AAGTCGATAAGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * *
1556873 GGTAAAAAAGTCTCTAAGGTCAAAGCCGATAAGCAGACTAAATGT-AAGAAAGTCTAC-AAGGTT
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAG-AAGTCT-CTAAGGTC
* * * *
1556936 AAAACC-ACCAGGTAAACTACAGGCAAA
64 AAAGCCGA-CAAGCAGACT------AAA
* * * * * *
1556963 GGTAAAAAAGTCTCCAAGGTCAAAGTC-AGCAAGCAAACTAAAGGTAAAAAAGTCTCCAAGGTCT
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGA-CAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
**
1557027 AAGCCGACTGGCAGACT-AA
65 AAGCCGACAAGCAGACTAAA
* * **
1557046 GGTAAAGAAGTCTCCAAAGTCAAAG-CTGACAAGCTAAAGACTAAAGGT-GTGAAAGTCTCTAAG
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGC---AGACTAAAGGTAAAG-AAGTCTCTAAG
* * *
1557109 GTTAAAGCCGATAAGCAGACTAAG
61 GTCAAAGCCGACAAGCAGACTAAA
* * * * * * * *** *
1557133 GGTAAAAAAGTCTCTAAGGTTAGAGCCGACAAGTAGACTAAAGGTGTGGAAGTCTCCAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
** * * * *
1557198 AGTTGGCATGTAGACTAAT
66 AGCCGACAAGCAGACTAAA
* * * * **
1557217 GGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGATTAAAAGTATGGAAG-CT-TATAGGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTA-A-GGTC
* * *
1557280 AACGTCGATAAGCAGACTAAA
64 AAAGCCGACAAGCAGACTAAA
* * * * * *
1557301 GGAAAAGAAGTCTCCAAGGTTAAAGCCGACAAGCAGACTAAAGGTAAGGAAGTC-CCACA-GTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTA-AGGTCA
** *
1557364 AAATCGATAAGCAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * **
1557384 GGTAAGGAAGTCTACAAGGTCAAAGCCGTTAGGCAGACTGCAGGTAAGGGTAAAGAAGTCTCTAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACT--A---AA-GGTAAAGAAGTCTCTAA
* ** *
1557449 AGTCAAAATCGACAAGCAAACTAAA
60 GGTCAAAGCCGACAAGCAGACTAAA
* * * * * * * * *
1557474 AGTAAAAAAGTGTTCAGGGTTAAAG-CTGACAGGCAAACTAAGGGTAAAGAAGTC-CTAGGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * *
1557537 AAGCCAATAGGCAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * **
1557557 GGTAAGGAAGTCTACAAAGTCAAAG-CCCCTAGGCAGACTACAAGTTTAGGTAAAGAAGTCTCTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGAC-AGGCAGACT--AA----AGGTAAAGAAGTCTCTA
* * ** *
1557621 AGTTTAAAGTGGACAAGCAAACTAAA
59 AGGTCAAAGCCGACAAGCAGACTAAA
* * * * * * * ** * *
1557647 GGTAAAAAAGTCTCCAACGTTAAAGCCAACAAGTAGACT-AAGGTTATGGAACTCTCTAAGGTTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGG-TAAAGAAGTCTCTAAGGTCA
* * * *
1557711 AAGCTGATAGGTAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * *** * * *
1557731 AGTAAA-ATAGTCTCTAAGGTCAAAGTCGACAAATA-AGTTAAAGGT-AAGAAAGTCTCCAACGT
1 GGTAAAGA-AGTCTCCAAGGTCAAAGTCGACAGGCAGA-CTAAAGGTAAAG-AAGTCTCTAAGGT
* ** *
1557793 CAAAACTAACAGGCAGACTAAA
63 CAAAGCCGACAAGCAGACTAAA
** * * ** *
1557815 GGT-AAGAAAGTCTTTAAGGTCAAAGTTGACAGCCAGGGTAAAAGTAAAGAAGTC-CTCAAGGTC
1 GGTAAAG-AAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTC
* * *
1557878 AAAGCCAACAGGTA-AGCTAAA
64 AAAGCCGACAAGCAGA-CTAAA
* * * * * * * *
1557899 GGTAAAGAAGTTTTCAAGGTCAAAGCCAACAAGCAAACTAAAGGTAAAGAAGTCACCAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
*
1557964 AGCC-A-ATAGACAAACTAAA
66 AGCCGACA-AG-CAGACTAAA
* * * * * * *
1557983 GATAAGGAAGTCTCCAAGGTTAAAG-CAGACAAGCAAACTAAAGGTAAAAAAGTCTCTAAAGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC-
* * *
1558047 AAAGCCAATAAGCAGACTAAG
64 AAAGCCGACAAGCAGACTAAA
* * * * ** *
1558068 GGCAAGGAAGTCTCTAGGGTCAAAG-CTGACAGATAGACT-AAGAGCAAA-ATAG-CGTAC-AAG
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAG-GTAAAGA-AGTC-T-CTAAG
* * *
1558128 GTCAAAGTCGACAGGAAGACTAAA
61 GTCAAAGCCGACAAGCAGACTAAA
* * * **
1558152 GGTAAAGAAATCTCCATA-GTCAAAGTCGACAGGCAGAATAACA-GTAAGGAAG-CAT-TCCGAG
1 GGTAAAGAAGTCTCCA-AGGTCAAAGTCGACAGGCAGACTAA-AGGTAAAGAAGTC-TCTAAG-G
** **
1558213 TCAAAGTTGACCGGCAGACTAAA
62 TCAAAGCCGACAAGCAGACTAAA
* ** * * * *
1558236 GGTAAAGAAGTCTCCAAGGTTAAAGTCGACAGATAGATTGAAA-ATAAGGAAGTCTCCAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACT-AAAGGTAAAGAAGTCTCTAAGGTCA
*
1558300 AAGCGGACAAGCAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* ** * * * * *
1558320 GGTAAAGAAGTCTCTAAGGTCAAAAACCAACAAGCAGACTAAGGGTAAGGAAGTCTCTATGGTCA
1 GGTAAAGAAGTCTCCAAGGTC-AAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
** * * ** * *
1558385 AAGCTAATAGGTGGGCTAAG
65 AAGCCGACAAGCAGACTAAA
* * * * * * * *
1558405 GGTAAA-AAGTCTTCAGGGTTAAAGCCGATAGGAAGACTAAAGGTAAGGAAGTCTCTAGGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* *
1558469 AGTCGACAAGCAAACTAAA
66 AGCCGACAAGCAGACTAAA
* * ** * *
1558488 GGTAAGGAAATCT-TGAGAGTCAAAG-CTGACAAGCAAACTAAAGGTAAAGAAGTC-CATAAGGT
1 GGTAAAGAAGTCTCCAAG-GTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTC-TAAGGT
** * *
1558550 CAAAGTTGATAGGCAGACTACAGGTAA
63 CAAAGCCGACAAGCAGACT--A---AA
* * * * * * * *
1558577 GGGTAAAGAAATCTCCAGGGTCAAAGTCGACATGTATATTAAAGGT-ATGAAGCCTAC-AAGGTC
1 -GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCT-CTAAGGTC
* * *
1558640 AAAGCTGACAGGCAAACTAAA
64 AAAGCCGACAAGCAGACTAAA
* ** * * * * * * *
1558661 GGAAAAGAAGTCTTTAGGGTTAAAGCCAATAGGTAGACTAAGGGTAAAGAAGTC-CT----T--A
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
*
1558719 AG--G-TAAGCAGACTAAAA
66 AGCCGACAAGCAGACT-AAA
* * * *
1558736 GGTAAGGAAGTCTACAAGGTCAAAATC-ACCAGGCAAACTAAAGGTAAGGGTAAAGAAGTCTCTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGA-CAGGCAGACT--A---AA-GGTAAAGAAGTCTCTA
* *
1558800 AGGTCAAAGCCGACAAGTAGACTGAA
59 AGGTCAAAGCCGACAAGCAGACTAAA
* * * * * * *
1558826 GGTAAAAAAGTCTTCACGGTCAAAGCCGACTGGCAGACTAAGGGT-AAGAATGTC-CCAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAA-GTCTCTAAGGTCA
* *
1558889 AAGCCGACAGGTAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * *
1558909 GGTAAGGAAGCCTACAATGTCAAAGCCGCCAAGCAAACTACAGGTAAGGGTAAAGAAGTCTAC-A
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACT--A---AA-GGTAAAGAAGTCT-CTA
* ** * *
1558973 AAGTCAAAGTTGACAAGTAAACTAAA
59 AGGTCAAAGCCGACAAGCAGACTAAA
* * * * * * * * *
1558999 AGTAAAAAACTCTCTAAGGTCAAAG-CTGACATGCAAACT-ATGGTAAGGAAGT-TTTCAAGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTC
* *
1559061 AAAGCCAATAAGCAGACTAAA
64 AAAGCCGACAAGCAGACTAAA
* * * * * * * *
1559082 GATAAGGAAGTTTTCAAGGTCAAAG-CTGACAAGTA-AGCTAAAAGTAAAAAAGTCTCTAAGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGA-CTAAAGGTAAAGAAGTCTCTAAGGTC
* * *
1559145 AAAGCCAACAAACAGACTAAG
64 AAAGCCGACAAGCAGACTAAA
* * * * * * *
1559166 GGT-ATGAAACTCTCTAAGGTCAAAG-CTGATA-GCTAGACTAAGGGTAAA-ATAGTCTTTATGG
1 GGTAAAG-AAGTCTCCAAGGTCAAAGTC-GACAGGC-AGACTAAAGGTAAAGA-AGTCTCTAAGG
** *
1559227 TCAAAG-ATA-ATAGACCGACTAAA
62 TCAAAGCCGACA-AG-CAGACTAAA
* * * * * *
1559250 GGTAAGGAAGTCTCCAAGGTTAAAG-CTGACAAGTAGACTAAAGGTAAGGAAGTCT-TCAGGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTC
* * *
1559313 AAAGCCAAC-AGCCAGGCAAAA
64 AAAGCCGACAAG-CAGACTAAA
* * * * * *
1559334 AGTAAAGAAGTC-CTCAAGGTCAAAGCCGACAGTCTA-CCTAAAGGTAAAGAAGTTTCCAAGGTC
1 GGTAAAGAAGTCTC-CAAGGTCAAAGTCGACAGGC-AGACTAAAGGTAAAGAAGTCTCTAAGGTC
* * * * * *
1559397 AAAGCCGATAGGTAAATTGAA
64 AAAGCCGACAAGCAGACTAAA
** * * * * *
1559418 GGTAAAGAAGTGACCAAGGTCAAAGTCGACTA-GCAGATTAAAGATAAGGAAGTTTCCAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGAC-AGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* *
1559482 AAGCAGACAAGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * * *
1559502 GGTAAAAAAGTCTCTAAGGCCAAAAG-CTAATAAGCAGACTAAGGGTAAGGAAGTCTCTAGGGTC
1 GGTAAAGAAGTCTCCAAGGTC-AAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC
* * * *
1559566 AAAGCTGATAAGTAGACTAAG
64 AAAGCCGACAAGCAGACTAAA
** * * * * * * * *
1559587 GGTAAA-ACTA-TCTTTAGGGTCAAAGTCAATAGGCAAACTAAAAGT-AAG-GGTATCTAGGGTC
1 GGTAAAGA--AGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC
* *
1559648 AAAGCCGACAGGCAAACTAAA
64 AAAGCCGACAAGCAGACTAAA
* * * * * *
1559669 GG-AAAAAAGTCTACAAGGTCAAAG-CGGACAAGCAGACTAAAGGTAAAAAAGTCTCCAAGGTTA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * * * *
1559732 AAACCAACAAGCATACTGAG
65 AAGCCGACAAGCAGACTAAA
* * * * * * * * * * *
1559752 GGTAAGGAACTCTCTAGGGTCAAAGTTGATAGGTAGACTAAGGGTAAA-ATAGTCCCCAAGATCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGA-AGTCTCTAAGGTCA
*** * *
1559816 AAATTGACAAACAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* ** * * * * *
1559836 AGT-AAGAAAGTCTCCAAAATCAAAG-CTGATAGGCAAACTAATGGTAAGGAAGTCT-TAGGGTC
1 GGTAAAG-AAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC
* * **
1559898 AAAGCCGA-TAGCCAAAAAAAAAA
64 AAAGCCGACAAG-C--AGACTAAA
* * * * *
1559921 AG-AAAAAAGTC-CTC-AGAGTCAAAG-CTGACAGGCTA-CCTAAAGG-AAAGGAAGTTTCCAAG
1 GGTAAAGAAGTCTC-CAAG-GTCAAAGTC-GACAGGC-AGACTAAAGGTAAA-GAAGTCTCTAAG
* * * * *
1559980 GTCAAAGTCGATAGGTAAACTAAA
61 GTCAAAGCCGACAAGCAGACTAAA
* * * * * * * * * * *
1560004 GGTAAGGAAGTCACCAAGGTTAAAATCGACAAGTAAACTAAAGAT-AAGAAACTTTCCAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCA
** *
1560068 AAGTGGACAAGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * * * *
1560088 GGTAAAGAAGTCTCTAGGGTCAAAGCCGACATGCAGATTAAAGGTAAGGAAATCTCCAAGGTCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* * *
1560153 AGTCGACAGGAAGACTACAAGTCAA
66 AGCCGACAAGCAGACT---A---AA
* * * * * *
1560178 GGTAAA-ATAGTCTCCAAGGTCAAACTTGATAGGCAGATTAAAGGTAAGGAAGTCTCTAACGTCA
1 GGTAAAGA-AGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * *
1560242 AAGTCGACAGGTAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * ** * * * * * *
1560262 AGTAAGGAAGTCTTCAGGGTCAAAACCGACAGGCAAACTAAAAGTGAAGAATTCTCCAAGGTTAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
* *
1560327 AGTCGACAAGCAAACTAAA
66 AGCCGACAAGCAGACTAAA
* * * * * * * *
1560346 GGTGAAGAATTCTCCAAGGTTAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTAC-AAGTTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCT-CTAAGGTC-
* * *
1560410 AAATAGCCAGGCAGACTACAGA-TAAG
64 -AA-AGCC-GACA-A--GCAGACTAAA
* * * * * * * * **
1560436 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAAGTAGACTAAAAGTAAAAAAAATATTTTTGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGT-AAAGAAGTCTCTAAGGTCA
** * *
1560501 AAGCCGACTGGTAAACT-AA
65 AAGCCGACAAGCAGACTAAA
** * * * * *
1560520 GGCGAGGAAGTCTCAAAGGTCAAAGCCATCAAGCAGACTAAAGACTAAAGGT-ATGAAAGTCTCT
1 GGTAAAGAAGTCTCCAAGGTCAAAG---TCGA-CAGGC---AGACTAAAGGTAAAG-AAGTCTCT
* * * * *
1560584 AGGGTCAAAGCCGATAGGCAAACTAAG
58 AAGGTCAAAGCCGACAAGCAGACTAAA
* * ** * *
1560611 GGTAAAGAAGTCTCCAAGGTCAAAG-CTGACAAGTAGACTAAAGGTATGGAAGTCCCTAGGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * * * *
1560675 AAGTCGATAAGGAAAGTAAA
65 AAGCCGACAAGCAGACTAAA
* * ** * * * * ** * * *
1560695 AGTAAAAAAGTCTTGAAGGTCAAA-ACTGATAGGCATATTAAAGGTATGGAAGTTTCCAGGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* *
1560759 AAGCTGACAGGCAGACTAAA
65 AAGCCGACAAGCAGACTAAA
* * ** * * * * *
1560779 GGTAAAGAAGTCTCCAGGGTTAAAACCGACAAGTAAACTACAAGTAAGGGTAAAAAAGTCTCCAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACT---A--AA-GGTAAAGAAGTCTCTAA
** * * *
1560844 GGTCAAAGATGACAGGTAAACTAAA
60 GGTCAAAGCCGACAAGCAGACTAAA
* * * * * * * *
1560869 GGTAAAAAACTCT-CTAGGATCAAAG-CTGACAGGCAAACT-ATGGTAAGGAAGTCTCTAAAGAC
1 GGTAAAGAAGTCTCCAAGG-TCAAAGTC-GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC
* * *
1560931 AAAACCGATAGGCA-AGCTAAA
64 AAAGCCGACAAGCAGA-CTAAA
** * ** * *** * *
1560952 AATAAGGAAGTCTCCAAGGTTGAAG-CAGGAAAAAAAGACTAAAGGTAAAAAAGTCTCCAAGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTC--GACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC
* * *
1561016 AAAGCCAACAAGCAGAATAAG
64 AAAGCCGACAAGCAGACTAAA
* * * * * * * *
1561037 GGTAAAGAACTCTCGAAGGTCAAAGTTGATAGGCAGACTAAGGGTAAA-ATAATCT-TCAGGGTT
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGA-AGTCTCT-AAGGTC
* * *
1561100 AAAACCGATAGGCAGACTAAA
64 AAAGCCGACAAGCAGACTAAA
* * * * * * *
1561121 GGTAAGGAAGTCT--AAGTTTAAAGTTGACAGACATACTAAAGGT-AAGAAAGTCT-TCATGGTC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAG-AAGTCTCT-AAGGTC
** *
1561182 AAAGTTGAC-AGCTAGACAAAA
64 AAAGCCGACAAGC-AGACTAAA
* * * * * * * *
1561203 AGTAAAGAAGTCTTCAAGGTCAAAGCCAACAGGCTA-CCTAAAGGTAAAGAAGTTTCCAAGGTCC
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGC-AGACTAAAGGTAAAGAAGTCTCTAAGGTCA
* * *
1561267 AAGCCGATAGGCAAACTAAA
65 AAGCCGACAAGCAGACTAAA
* * * * * *
1561287 GGTAAAAAAAATCTCCAAGGCCAAAGTCGATAGGTAGACTAAAGACTAAGGGTTAAA-AAGTCTT
1 GGT-AAAGAAGTCTCCAAGGTCAAAGTCGACA-G--G-C---AGACTAAAGG-TAAAGAAGTCTC
* * * *
1561351 TAGGGTTAAAGCCGA-TAGACGGAC-AAA
57 TAAGGTCAAAGCCGACAAG-CAGACTAAA
* * * * * * * **
1561378 GGGCAAAGAGGTCTCTAAGGTCAATA-CCGACAAGTAGACTAAAGAT-AAGAAAACCTCTAAGGT
1 -GGTAAAGAAGTCTCCAAGGTCAA-AGTCGACAGGCAGACTAAAGGTAAAG-AAGTCTCTAAGGT
* *
1561441 TAAAG-CGAACAAGCAGACTATA
63 CAAAGCCG-ACAAGCAGACTAAA
* * * * * * * * *
1561463 GATAAAAAAGTGTCCAAGGTGAAAGCCAACTA-GTAGACTAAAGGTAACGAAGTCTCCAAGGTCA
1 GGTAAAGAAGTCTCCAAGGTCAAAGTCGAC-AGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
*
1561527 AAGCCGACAAGTAGACTACAGGTCA
65 AAGCCGACAAGCAGACTA-A----A
* * * * *
1561552 GGGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGTAGACTCAAGGTAAAAAAATCTCTAGGGTCA
1 -GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCA
*
1561617 AAGCCGACAAGCAGACT-AT
65 AAGCCGACAAGCAGACTAAA
*
1561636 GGTAAGGAAGTCT
1 GGTAAAGAAGTCT
1561649 TCTTGGCCAA
Statistics
Matches: 6315, Mismatches: 1691, Indels: 873
0.71 0.19 0.10
Matches are distributed among these distances:
74 8 0.00
75 30 0.00
77 4 0.00
79 1 0.00
80 3 0.00
81 44 0.01
82 115 0.02
83 1065 0.17
84 3045 0.48
85 540 0.09
86 65 0.01
87 57 0.01
88 38 0.01
89 87 0.01
90 809 0.13
91 317 0.05
92 83 0.01
93 4 0.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (84 bp):
GGTAAAGAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAA
AGCCGACAAGCAGACTAAA
Found at i:1553381 original size:218 final size:218
Alignment explanation
Indices: 1553081--1553477 Score: 546
Period size: 218 Copynumber: 1.8 Consensus size: 218
1553071 AAAAGTAAGG
* * * * *
1553081 AAGTCTCCAAAGTTAATGTCGATAAGTAAACTAAAGATTATGGGTAAGAGAATCTCCATGGTCAA
1 AAGTCTCCAAAGTCAAAGTCGATAAGGAAACTAAAGACTATGGGTAAGAGAATCTCCATGGCCAA
* * *
1553146 AATCGATAGGCAGACTAAGGGTAAAGAAGCCTCCAAAGTCAAAGCCGACAAGCAGATTAAAGGTA
66 AATCAATAGGCAGACTAAGGGTAAAAAAGCCTCCAAAGTCAAAGCCGACAAGCAGACTAAAGGTA
* *
1553211 AGGAAGTCTCCAGGGTCAAAGTCGA-GAGGCAAACTAAGGGTAAAAAAGTCTCTAGGGTCAAAAC
131 AGGAAGTCTCCAAGGTCAAAGTCGACG-GGCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAAC
1553275 TAACCAGCATACTAAATGTGTGGA
195 TAACCAGCATACTAAATGTGTGGA
* * *
1553299 AAGTCTCCAAGGTCAAAGTCGAT-AGGAAGACTAAAGACTATGGGTAAGAGAGTGTCCATGGCCA
1 AAGTCTCCAAAGTCAAAGTCGATAAGGAA-ACTAAAGACTATGGGTAAGAGAATCTCCATGGCCA
* * * * * **
1553363 AAGTCAATAGGTAGACTAAGGGTAAAAAAGTCTCCAAGGTCAAAGCTGACCGGCAGACTAAAGGT
65 AAATCAATAGGCAGACTAAGGGTAAAAAAGCCTCCAAAGTCAAAGCCGACAAGCAGACTAAAGGT
* ** *
1553428 ATGGAAGTCTCCAATTTCAAAGTCGACGGGCAAACTAAAGGTAAAGAAGT
130 AAGGAAGTCTCCAAGGTCAAAGTCGACGGGCAAACTAAAGGTAAAAAAGT
1553478 GTCCATCGTT
Statistics
Matches: 153, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
217 4 0.03
218 148 0.97
219 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.19
Consensus pattern (218 bp):
AAGTCTCCAAAGTCAAAGTCGATAAGGAAACTAAAGACTATGGGTAAGAGAATCTCCATGGCCAA
AATCAATAGGCAGACTAAGGGTAAAAAAGCCTCCAAAGTCAAAGCCGACAAGCAGACTAAAGGTA
AGGAAGTCTCCAAGGTCAAAGTCGACGGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAACT
AACCAGCATACTAAATGTGTGGA
Found at i:1553686 original size:48 final size:42
Alignment explanation
Indices: 1553398--1561291 Score: 1220
Period size: 42 Copynumber: 185.8 Consensus size: 42
1553388 AAAAGTCTCC
* * * * * *
1553398 AAGGTCAAAGCTGACCGGCAGACTAAAGGTATGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * ** *
1553440 AATTTCAAAGTCGACGGGCAAACTAAAGGTAAAGAAGTGTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * ** **
1553482 ATCGTTAAAGTCGACAAGCAAACTAAAGGTAAAAAACTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** ** *
1553524 AGGGTCTAAGTCGACAGGCAGACGAAAGGTAAAAAAGTTTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* *
1553566 AGGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGCCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1553608 AAGGTCAAAGTCGATAGGCAAACTATAGGTAAGGGTAAAGAAGTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAA-GG--AAG-ACTCT
* * ** *
1553654 ACAAGGTCAAAGCCGACAGACAGACTAAAGGTAAAAAAGTCTCT
1 --AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1553698 -AGGGCTAAAGTCGACAGGCACACT-AAGGTAAAGAAGTCTCC
1 AAGGTC-AAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * *
1553739 AAGGTCAAAATCGACAGGCAGACTAAAGATAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * * * *
1553781 AAGGTCAAAGCATATAAGCAGACTAAAGGTAA-AAAGTCTCA
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1553822 AAGGTCAAAGCCAACAGGCAGACTAAATGTAAAGATGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * ** *
1553864 -AGGATCAAAGTCGATAAGTAGACAAAAAGTAAAGAACTCTCC
1 AAGG-TCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * *
1553906 AGGGTCAAAGTCGATAGGCAGA-TTAAGGTAAGAAAGTCTCG
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * *
1553947 AAGGTCAAAGCCGACAAGG-AGACTAAAGATAAGGAAGTCTCT
1 AAGGTCAAAGCCGAC-AGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** * *
1553989 AGGGTCAAAG-TGAACAAGCAGACTAAAGATAAAAAAG-TTTT
1 AAGGTCAAAGCCG-ACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1554030 CAAGGTCAAAGCCAACAAGCAGACT-AAGGATAAGG-AGTCCCT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGG-TAAGGAAGACTCT
* * * *** * * *
1554072 AGGGTCAAAGTCGACAAGTTGACTAAGGGTAA--AATAATTTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAA-GA-CTCT
* * * * * *
1554114 AAGGCCAAAGCCAATAGGCAGACTAAAGGTAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * *
1554156 AAGGTAAAAGTTGACAGACATACTAAAGGTAAGAAAGCCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1554198 AAGGTC-AAGTCGACAGGCAGACAAAAAGTAAGGAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * ** ** *
1554238 CAATGTCAAAGTCGATAGGTAAACTAAAGGTAAAAAAGTTTCA
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** ** *
1554281 AAAGTCAAAGCTAACAGGCAAACTAAAGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1554323 AGGGTCAAAGTCGACAGGTAGACTGCAGACTAAGGGTAAGAAAGTA-TCC
1 AAGGTCAAAGCCGAC----AG---GCAAACTAAAGGTAAGGAAG-ACTCT
* * * * * * * * **
1554372 AGGGTTAAAGCTGATAGGCAGACTAAGGGCAAAGAAGTTTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1554414 AAGATCAAAGCCGACAAGCAAACTAAAGGTAAGGAAGTCACT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * *
1554456 AGGGTTAAAGTC-AGTAGGCAGACTAATGGTAAAGAAGTCTCC
1 AAGGTCAAAGCCGA-CAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1554498 AAGGACAAAGCCGACTGGCAAACTAAAGGTATGGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * *
1554540 -AGTGTCGAAGTTGGCAGGTAGACTAAAGGTAA-AAAAATCTCT
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGA-CTCT
* * * ** ** *
1554582 AGGGTTAAAGCCAACACACAGGCTAAAGGTAAGGAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * ** **
1554623 CAGTGTCAAAGCTGATAGGCAAACTAAAAATAAGGAAGTTTC-
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * * *
1554665 AAGGGCCAAAGTTGATAAGAAAACTAAAGGTAAAGAAGTCTCC
1 AA-GGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * *
1554708 AAGATCAAGGCTGATAAGCAAACTAAAGGTGAGAAAGTCTAT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * * * *
1554750 AAGGTCAAAATCGATAGCTAGACTACAAGTAAAGGCAAAGAAGTCTCA
1 AAGGTCAAAGCCG--A-C-AGGC-A-AACTAAAGGTAAGGAAGACTCT
* * * * * *
1554798 AAGGTCAAAGTCGACAGGCAGACTAAAAGTAA-AAAAAGTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * *
1554839 CAAGGGT-AATAACAAACAGGCAGACT-ATGGTAAGAAAGTCTCT
1 -AA-GGTCAA-AGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** *
1554882 ATGGTCAAAGCCGACAAGCAGACTAAAGATAAAGAAGTGTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * *** * * ** * *
1554924 AAGGTCGAAGCAAAAAAATAGAGTAAAGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * ** *
1554966 AAGGTCAAAGCCAACAAGCAGACTAAGGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * ** * * * *
1555008 AAGTTTAAAGCTAACAAGCAAACTGAGGGTGAA--ATAGCCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGT-AAGGA-AGACTCT
* * * *
1555049 CAGCGTCAAAGCCGACAAGCAAACTAAAGGTAAGGAAGTCTCC
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1555092 AAAGTCAAAGCCGATAGGCAGACTAAAGGTAAGGAA-TCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * *
1555133 AAGGTCTAAGATGGCAGGCAAATTGAAGGTAAGGAA-ATTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * *
1555174 CAAGGTCAAAGCCGACAGAAAAACTAATGGTAAAGAAGTCACT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
*** * * * *
1555217 AAGGTCAAAGTTTATAGGCAAACTAAAGACTAAAGATAAGAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAG------G-TAAGGAAGACTCT
* * * * * * * * *
1555266 AGGGACAAAGCTGATAGGTAGACTAAGGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *** * * * *
1555308 ATGGTCAAAGCTGATAAATAGACTAAAGGTTAGGATGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** ** * *
1555350 AAGGTCAAAGTGGACA-GCAAGACTAGGGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAA-ACTAAAGGTAAGGAAGACTCT
* * ** *
1555392 AGGGTCAAAGCTGACAGGCAAACTAAAGGTGTGGAAGTCTC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * *
1555433 CAGTGTCAAAGCCAATAGGCAGACTAAAGGTAAAGAAGTCTCC
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * *
1555476 AGGGTTAAAGCCAATAAGTAGACTAAAGGTAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * ** *
1555518 AAGGTTAAAGTCAATAGGTAGACTAAAGGTAAGGAAGTTTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1555560 AGGGTCAAAACCGATAGGCAAACTAAAGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1555602 ATA-GTCAAAGCCGACAGGTAGACTAAAGGTAGGGAAGTCTCC
1 A-AGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * *
1555644 AAAGTCAAAGCCGACAAGTAG-ACAACTAGTAAGGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGAC-AG--GCA-AACTA--AA-GGTAAGGAAGACTCT
* * * * * ** *
1555692 AAGGTTAAAGTCGATAGGTAGACTAAAGGTAAAAAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * ** * *
1555733 CAAGGTCAAAGCCAACAAGCAGACT-AGGGTAAAAAAGTCTCC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1555775 AAGGTCAAAGCCGATAAGCAGACTATAGATAAGGAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * ** *
1555816 CAAAGTCAAA-ATGAACAAGCAGACTAAAGGTAAAAAAGTCTCT
1 -AAGGTCAAAGCCG-ACAGGCAAACTAAAGGTAAGGAAGACTCT
* * ** * *
1555859 AAGGTCGAAA-CCAACAAGCTGACTAAGGGTAAGGAAGTCTCT
1 AAGGTC-AAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * **
1555901 AAGGTCAAAGCTGAC-GAGCAAACAAAAAGTAAAGAAGTTTCT
1 AAGGTCAAAGCCGACAG-GCAAACTAAAGGTAAGGAAGACTCT
* * * * ** *
1555943 AGGGTCAAAGCCTACAGGTAGACTAAAGGTAAGGAAGTTTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * **
1555985 AAGGTCAAAACCGA-TGAGTAAACTAAAGGCAAAGAGGTTTCT
1 AAGGTCAAAGCCGACAG-GCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1556027 AAGGTCAAAGTCGATAGGCAGACTAAAGACTAAGGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAG-GTAA-GG-----AAGACTCT
* ** * * * * * ** *
1556076 ATGGTCAAAGCTAAAAAGCAGACTAAGGGCAAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGG-TAAGGAAGACTCT
* ** * * *
1556119 AAGGTCAAAGCCGAAAAACAGACTAAAGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * ** *
1556161 AAGGTCATATTCGACAGGTAAATTAACGGTAAATAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * *
1556202 CAAGGTCAAAGCTGACAGGTCAGACTAAAGGTATA-GAAGTCTCT
1 -AAGGTCAAAGCCGACAGG-CAAACTAAAGGTA-AGGAAGACTCT
* * * * *
1556246 -AGTGTCAAAACTGACAGGCAGACTAAAGGTAAAGAAGTCTCT
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1556288 -AGGTTCAAAGTCGATC-GACAGAGT-AAGGTAAGGAA-A-TCTT
1 AAGG-TCAAAGCCGA-CAGGCAAACTAAAGGTAAGGAAGACTC-T
* * * *** *
1556328 TAGTGTCAAAGCTGACAAGTAGTCTAAAGGCTAAGGGTATTAAAGTCTCT
1 AAG-GTCAAAGCCGAC-AG--G-C-AAA--CTAAAGGTAAGGAAGACTCT
* * * * * * *
1556378 AAGGTCAAAGCCGATAGGTAGACTAAATGTAA-AAATG-TTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAA-GACTCT
* * * * * * ** * * *
1556419 CAAGGTCCAATCTGACAAGTAGACTAAAGGTGTGAAAGCCTCC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1556462 AAGGTTAAAGTCGACAAG-AAGACTAAAGGTAAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAA-ACTAAAGGT-AAGGAAGACTCT
* * * * *
1556505 AAGGTTAAAGCCAACAGGCAGATTAAAGGTATGGAAG-C-CT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * *
1556545 ATAGGATCAAAGTCGACAGGCAAACTAAAGGTAA-AAAGGTCTCT
1 A-AGG-TCAAAGCCGACAGGCAAACTAAAGGTAAGGAA-GACTCT
* * * * * *
1556589 AGGGTTATAGTCGACAGGCAGACTAAAGGTAAGGAAGTCTC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * *
1556630 AAGGTCAAAGTAGATAGGCAGACTAGAGGTAAGGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * *
1556672 AGGGTCAAAG-CGCACAAACAAACTAAAGGTAAGGAAGTCTCC
1 AAGGTCAAAGCCG-ACAGGCAAACTAAAGGTAAGGAAGACTCT
* *** *
1556714 AAGGTCAATGCC-AGCAGGCAAACTAAAGGTAAGGAACTTTCC
1 AAGGTCAAAGCCGA-CAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * * *
1556756 AAGGTTAAAATCGAGAGGCAAACTATAAGTTAGGGTAAAAAAGTAGCC
1 AAGGTCAAAGCCGACAGGCAAACTA-AAGGTAAGG---AAGACT--CT
* * ** *
1556804 AAGGCCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** *
1556846 AGGGTTAAAGTCGATAAGCAAACTAAAGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1556888 AAGGTCAAAGCCGATAAGCAGACTAAATGTAAGAAAGTCTAC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACT-CT
* * * ** * *
1556930 AAGGTTAAAACC-ACCAGGTAAACTACAGGCAAAGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGA-CAGGCAAACT------AAAGGTAAGGAAGACTCT
* * ** * *
1556978 AAGGTCAAAGTC-AGCAAGCAAACTAAAGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGA-CAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1557020 AAGGTCTAAGCCGACTGGCAGACT-AAGGTAAAGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * ** * *
1557061 AAAGTCAAAGCTGACAAGCTAAAGACTAAAGGTGTGAAAGTCTCT
1 AAGGTCAAAGCCGACAGGC--AA-ACTAAAGGTAAGGAAGACTCT
* * * * * ** *
1557106 AAGGTTAAAGCCGATAAGCAGACTAAGGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** * *
1557148 AAGGTTAGAGCCGACAAGTAGACTAAAGGTGTGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * * * * *
1557190 AAGGTCAAAGTTGGCATGTAGACTAATGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1557232 AAGGTCAAAGCCGACAGGCAGATTAAAAGTATGGAAG-CT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * *
1557272 ATAGGGTCAACGTCGATAAGCAGACTAAAGGAAAAGAAGTCTCC
1 A-A-GGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1557316 AAGGTTAAAGCCGACAAGCAGACTAAAGGTAAGGAAGTC-CC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * *
1557357 ACA-GTCAAAATCGATAAGCAGACTAAAGGTAAGGAAGTCTAC-
1 A-AGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACT-CT
** * * *
1557399 AAGGTCAAAGCCGTTAGGCAGACTGCAGGTAAGGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACT--A---AA-GGTAAGGAAGACTCT
* ** * * ** **
1557447 AAAGTCAAAATCGACAAGCAAACTAAAAGTAAAAAAGTGT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1557488 CAGGGTTAAAGCTGACAGGCAAACTAAGGGTAAAGAAGTC-CT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1557530 AGGGTCAAAGCCAATAGGCAGACTAAAGGTAAGGAAGTCTAC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACT-CT
* * * * *
1557572 AAAGTCAAAGCC-CCTAGGCAGACTACAAGTTTAGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGAC-AGGCAAACT--AA----AGGTAAGGAAGACTCT
* * ** * ** * *
1557620 AAGTTTAAAGTGGACAAGCAAACTAAAGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * **
1557662 AACGTTAAAGCCAACAAGTAGACT-AAGGTTATGGAACTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGG-TAAGGAAGACTCT
* * * * * * * *
1557704 AAGGTTAAAGCTGATAGGTAGACTAAAAGTAA-AATAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGA-AGACTCT
* *** ** * * *
1557746 AAGGTCAAAGTCGACAAATAAGTTAAAGGTAAGAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * ** * * * *
1557788 AACGTCAAAACTAACAGGCAGACTAAAGGTAAGAAAGTCTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * *** * * *
1557830 AAGGTCAAAGTTGACAGCCAGGGTAAAAGTAAAGAAGTC-CT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1557871 CAAGGTCAAAGCCAACAGGTAAGCTAAAGGTAAAGAAG-TTTT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1557913 CAAGGTCAAAGCCAACAAGCAAACTAAAGGTAAAGAAGTCACC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1557956 AAGGTCAAAGCCAATAGACAAACTAAAGATAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * ** *
1557998 AAGGTTAAAGCAGACAAGCAAACTAAAGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * *
1558040 AAAGTCAAAAGCCAATAAGCAGACTAAGGGCAAGGAAGTCTCT
1 AAGGTC-AAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * ** * * *
1558083 AGGGTCAAAGCTGACAGATAGACT-AAGAGCAA--AATAGCGTAC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAG-GTAAGGAAGA-C-T-CT
* * *
1558125 AAGGTCAAAGTCGACAGG-AAGACTAAAGGTAAAGAA-ATCTCC
1 AAGGTCAAAGCCGACAGGCAA-ACTAAAGGTAAGGAAGA-CTCT
* * *
1558167 ATA-GTCAAAGTCGACAGGCAGAA-TAACA-GTAAGGAAGCATTCC
1 A-AGGTCAAAGCCGACAGGCA-AACTAA-AGGTAAGGAAG-ACTCT
* ** * * * * *
1558210 GA-GTCAAAGTTGACCGGCAGACTAAAGGTAAAGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * ** * * * * *
1558251 AAGGTTAAAGTCGACAGATAGATTGAAA-ATAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACT-AAAGGTAAGGAAGACTCT
* * * * *
1558293 AAGGTCAAAGCGGACAAGCAGACTAAAGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1558335 AAGGTCAAAAACCAACAAGCAGACTAAGGGTAAGGAAGTCTCT
1 AAGGTC-AAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * **** * * *
1558378 ATGGTCAAAGCTAATAGGTGGGCTAAGGGTAA-AAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1558418 CAGGGTTAAAGCCGATAGG-AAGACTAAAGGTAAGGAAGTCTCT
1 -AAGGTCAAAGCCGACAGGCAA-ACTAAAGGTAAGGAAGACTCT
* * *
1558461 AGGGTCAAAGTCGACAAGCAAACTAAAGGTAAGGAA-A-TCTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTC-T
* * * * *
1558502 GAGAGTCAAAGCTGACAAGCAAACTAAAGGTAAAGAAGTC-CAT
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTC-T
** * * * *
1558545 AAGGTCAAAGTTGATAGGCAGACTACAGGTAAGGGTAAAGAAATCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAA-GG--AAG--A-CTCT
* * * * * * * *
1558593 AGGGTCAAAGTCGACATGTATATTAAAGGT-ATGAAGCCTAC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACT-CT
* * * * *
1558634 AAGGTCAAAGCTGACAGGCAAACTAAAGGAAAAGAAGTCTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * *
1558676 AGGGTTAAAGCCAATAGGTAGACTAAGGGTAAAGAAGTC-CTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTC-T
*
1558718 AAGGT--AA---G-CA-G---ACTAAAAGGTAAGGAAGTCTAC-
1 AAGGTCAAAGCCGACAGGCAAACT-AAAGGTAAGGAAGACT-CT
**
1558751 AAGGTCAAAATC-ACCAGGCAAACTAAAGGTAAGGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGA-CAGGCAAACTAAAGGTAA-GG--AAG-A--CTCT
* * * * ** *
1558799 AAGGTCAAAGCCGACAAGTAGACTGAAGGTAAAAAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1558840 CACGGTCAAAGCCGACTGGCAGACTAAGGGTAA-GAATGTC-CC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAA-GACTCT
* * *
1558882 AAGGTCAAAGCCGACAGGTAGACTAAAGGTAAGGAAGCCTAC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACT-CT
* * * * *
1558924 AATGTCAAAGCCGCCAAGCAAACTACAGGTAAGGGTAAAGAAGTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAA-GG--AAG-ACTCT
* ** * * * ** **
1558970 ACAAAGTCAAAGTTGACAAGTAAACTAAAAGTAAAAAACTCTCT
1 --AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1559014 AAGGTCAAAGCTGACATGCAAACT-ATGGTAAGGAAG-TTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * *
1559054 CAAGGTCAAAGCCAATAAGCAGACTAAAGATAAGGAAG-TTTT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** *
1559096 CAAGGTCAAAGCTGACAAGTAAGCTAAAAGTAAAAAAGTCTCT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * **
1559139 AAGGTCAAAGCCAACAAACAGACTAAGGGTATGAAACTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * *
1559181 AAGGTCAAAGCTGATA-GCTAGACTAAGGGTAA-AATAGTCTTT
1 AAGGTCAAAGCCGACAGGC-AAACTAAAGGTAAGGA-AGACTCT
* *** * * ** * *
1559223 ATGGTCAAAGATAATAGACCGACTAAAGGTAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1559265 AAGGTTAAAGCTGACAAGTAGACTAAAGGTAAGGAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * ** * * * *
1559306 CAGGGTCAAAGCCAACAGCCAGGCAAAAAGTAAAGAAGTC-CT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * ** *
1559348 CAAGGTCAAAGCCGACAGTCTACCTAAAGGTAAAGAAGTTTCC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1559391 AAGGTCAAAGCCGATAGGTAAATTGAAGGTAAAGAAGTGAC-C-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAA--GACTCT
* * * * ** *
1559433 AAGGTCAAAGTCGACTA-GCAGATTAAAGATAAGGAAGTTTCC
1 AAGGTCAAAGCCGAC-AGGCAAACTAAAGGTAAGGAAGACTCT
* * ** *
1559475 AAGGTCAAAGCAGACAAGCAAACTAAAGGTAAAAAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * *
1559517 AAGGCCAAAAGCTAATAAGCAGACTAAGGGTAAGGAAGTCTCT
1 AAGGTC-AAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * * *
1559560 AGGGTCAAAGCTGATAAGTAGACTAAGGGTAA--AACTATCTTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAA-GA-CTCT
* * * * *
1559602 AGGGTCAAAGTCAATAGGCAAACTAAAAGTAAGG--GTA-TCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAG-ACTCT
* ** *
1559642 AGGGTCAAAGCCGACAGGCAAACTAAAGG-AAAAAAGTCTAC-
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACT-CT
* * * ** * *
1559683 AAGGTCAAAGCGGACAAGCAGACTAAAGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * * **
1559725 AAGGTTAAAACCAACAAGCATACTGAGGGTAAGGAACTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * * * * *
1559767 AGGGTCAAAGTTGATAGGTAGACTAAGGGTAA-AATAGTCCCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGA-AGACTCT
* *** ** * * * *
1559809 AAGATCAAAATTGACAAACAAACTAAAAGTAAGAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * * * *
1559851 AAAATCAAAGCTGATAGGCAAACTAATGGTAAGGAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *** * * *
1559892 AGGGTCAAAGCCGATAGCCAAA--AAAAAAAAGAAAAAAGTCCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAG-GAAGACT-CT
* * * * * ** *
1559934 CAGAGTCAAAGCTGACAGGCTACCTAAAGGAAAGGAAGTTTCC
1 AAG-GTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1559977 AAGGTCAAAGTCGATAGGTAAACTAAAGGTAAGGAAGTCACC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * *
1560019 AAGGTTAAAATCGACAAGTAAACTAAAGATAA-GAA-ACTTTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGAC--TCT
** * * *
1560061 AAGGTCAAAGTGGACAAGCAAACTAAAGGTAAAGAAGTCTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * *
1560103 AGGGTCAAAGCCGACATGCAGATTAAAGGTAAGGAA-ATCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGA-CTCT
* * *
1560145 AAGGTCAAAGTCGACAGG-AAGACTACAA-GTCAAGGTAAAATAGTCTCC
1 AAGGTCAAAGCCGACAGGCAA-ACTA-AAGGT-AAGG----A-AGACTCT
* * * * *
1560193 AAGGTCAAA-CTTGATAGGCAGATTAAAGGTAAGGAAGTCTCT
1 AAGGTCAAAGC-CGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1560235 AACGTCAAAGTCGACAGGTAGACTAAAAGTAAGGAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * ** *
1560276 CAGGGTCAAAACCGACAGGCAAACTAAAAGTGAA-GAATTCTCC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGT-AAGGAAGACTCT
* * * ** *
1560319 AAGGTTAAAGTCGACAAGCAAACTAAAGGTGAA-GAATTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGT-AAGGAAGACTCT
*
1560361 AAGGTTAAAGCCGACAGGCAAACTAAAGGTAAGGAA-A-TCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * *
1560401 ACAAGTTCAAAATAGCCAGGCAGACTACAGA-TAAGGGTAAAGAAGTCTCC
1 --AAGGTC--AA-AGCC-GACAGGC-A-A-ACTAAAGGTAAGGAAGACTCT
* * * * ** * * *
1560451 AAGGTCAAAGCCGACAAGTAGACTAAAAGTAAAAAAAATATTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGA-CTCT
** * * ** * *
1560494 TTGGTCAAAGCCGACTGGTAAACT-AAGGCGAGGAAGTCTCA
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * *
1560535 AAGGTCAAAGCC-ATCAAGCAGACTAAAGACTAAAGGTATGAAAGTCTCT
1 AAGGTCAAAGCCGA-C-AG--G-C--AA-ACTAAAGGTAAGGAAGACTCT
* * * * * *
1560584 AGGGTCAAAGCCGATAGGCAAACTAAGGGTAAAGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * *
1560626 AAGGTCAAAGCTGACAAGTAGACTAAAGGTATGGAAGTCCCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** *
1560668 AGGGTCAAAGTCGATAAGG-AAAGTAAAAGTAAAAAAGTCT-T
1 AAGGTCAAAGCCGA-CAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * ** *
1560709 GAAGGTCAAAACTGATAGGCATATTAAAGGTATGGAAGTTTCC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * *
1560752 AGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * * *
1560794 AGGGTTAAAACCGACAAGTAAACTACAA-GTAAGGGTAAAAAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTA-AAGGTAA-GG-----AAGACTCT
** * *
1560842 AAGGTCAAAGATGACAGGTAAACTAAAGGTAA--AAAACTCT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * *
1560882 CTAGGATCAAAGCTGACAGGCAAACT-ATGGTAAGGAAGTCTCT
1 -AAGG-TCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * * * * ** * *
1560925 AAAGACAAAACCGATAGGCAAGCTAAAAATAAGGAAGTCTCC
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
** * *** ** * *
1560967 AAGGTTGAAGCAGGA-AAAAAAGACTAAAGGTAAAAAAGTCTCC
1 AAGGTCAAAGC-CGACAGGCAA-ACTAAAGGTAAGGAAGACTCT
* * * * ** *
1561010 AAGGTCAAAGCCAACAAGCAGAA-TAAGGGTAAAGAACTCTCG
1 AAGGTCAAAGCCGACAGGCA-AACTAAAGGTAAGGAAGACTCT
** * * * * *
1561052 AAGGTCAAAGTTGATAGGCAGACTAAGGGTAA--AATAATCTT
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTC-T
* * * * *
1561093 CAGGGTTAAAACCGATAGGCAGACTAAAGGTAAGGAAG--TCT
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* * ** * * * *
1561134 AAGTTTAAAGTTGACAGACATACTAAAGGTAAGAAAGTCT-T
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* ** * * * * *
1561175 CATGGTCAAAGTTGACA-GCTAGACAAAAAGTAAAGAAGTCT-T
1 -AAGGTCAAAGCCGACAGGC-AAACTAAAGGTAAGGAAGACTCT
* * * * ** *
1561217 CAAGGTCAAAGCCAACAGGCTACCTAAAGGTAAAGAAGTTTCC
1 -AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
* *
1561260 AAGGTCCAAGCCGATAGGCAAACTAAAGGTAA
1 AAGGTCAAAGCCGACAGGCAAACTAAAGGTAA
1561292 AAAAAATCTC
Statistics
Matches: 5816, Mismatches: 1642, Indels: 788
0.71 0.20 0.10
Matches are distributed among these distances:
32 3 0.00
33 18 0.00
35 4 0.00
36 1 0.00
39 11 0.00
40 92 0.02
41 684 0.12
42 3911 0.67
43 420 0.07
44 53 0.01
45 78 0.01
46 28 0.00
47 29 0.00
48 343 0.06
49 133 0.02
50 6 0.00
51 2 0.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (42 bp):
AAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGACTCT
Found at i:1553810 original size:125 final size:124
Alignment explanation
Indices: 1553155--1561648 Score: 2030
Period size: 126 Copynumber: 66.5 Consensus size: 124
1553145 AAATCGATAG
* * * * ** * * * *
1553155 GCAGACTAAGGGTAAAGAAGCCTCCAAAGTCAAAGCCGACAAGCAGATTAAAGGTAAGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * * * * * * * *
1553220 CCAGGGTCAAAGTCGAGAGGCAAACTAAGGGTAAAAAAGTCTCTAGGGTCAAAACTAACCA
65 CCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GACAA
* ** * * * * *
1553281 GCATACTAAATGTGT-GGAAAGTCTCCAAGGTCAAAGTCGATAGGAAGACTAAAGACTATGGGTA
1 GCAGACTAAA-G-GTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAG-GTA-----A
* * * * * * * *
1553345 AGAGAGTGTCCATGGCCAAAGTCAATAGGTAGACTAAGGGTAAAAAAGTCTCCAAGGTCAAAGCT
57 AGA-AGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-
**
1553410 GACCG
120 GACAA
*** * *** * * *
1553415 GCAGACTAAAGGTATGGAAGTCTCCAATTTCAAAGTCGACGGGCAAACTAAAGGTAAAGAAGTGT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
** * * * * * * * * *
1553480 CCATCGTTAAAGTCGACAAGCAAACTAAAGGTAAAAAACTCTCTAGGGTCTAAGTCGACAG
65 CCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * * * * *
1553541 GCAGACGAAAGGTAAAAAAGTTTTTAGGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAGCCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* *
1553606 CTAAGGTCAAAGTCGATAGGCAAACTATAGGTAAGGGTAAAGAAGTCTAC-AAGGTCAAAGCCGA
65 CCAAGGTCAAAGTCGATAGGCAGAC--TA---AA-GGTAAAGAAGTCT-CTAAGGTCAAAG-CGA
1553670 C-A
122 CAA
*
1553672 GACAGACTAAAGGTAAAAAAGTCTCTAGGG-CTAAAGTCGACAGGCACACTAAGGTAAAGAAGTC
1 G-CAGACTAAAGGTAAAAAAGTCTCTAGGGTC-AAAGTCGACAGGCAGACTAAGGTAAAGAAGTC
* * * * *
1553736 TCCAAGGTCAAAATCGACAGGCAGACTAAAGATAAAGAAGTCTCTAAGGTCAAAGCATATAA
64 TCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GACAA
* * * * * *
1553798 GCAGACTAAAGGT-AAAAAGTCTCAAAGGTCAAAGCCAACAGGCAGACTAAATGTAAAGATGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * * * * * * * * *
1553862 -CTAGGATCAAAGTCGATAAGTAGACAAAAAGTAAAGAACTCTCCAGGGTCAAAGTCGATAG
65 CCAAGG-TCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * * * * *
1553923 GCAGA-TTAAGGTAAGAAAGTCTCGAAGGTCAAAGCCGACAAGG-AGACTAAAGATAAGGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGAC-AGGCAGACT-AAGGTAAAGAAGTC
* * * * * * * *
1553986 TCTAGGGTCAAAGT-GAACAAGCAGACTAAAGATAAAAAAGT-TTTCAAGGTCAAAGCCAACAA
64 TCCAAGGTCAAAGTCG-ATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAG-CGACAA
** * * ** *
1554048 GCAGACT-AAGG-ATAAGGAGTCCCTAGGGTCAAAGTCGACAAGTTGACTAAGGGTAAA-ATAAT
1 GCAGACTAAAGGTA-AAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAA-GGTAAAGA-AGT
* * * * * * * * *
1554110 TTCTAAGGCCAAAGCCAATAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTAAAAGTTGAC-A
63 CTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * * * * *
1554172 GACATACTAAAGGTAAGAAAGCCTCTAAGGTC-AAGTCGACAGGCAGACAAAAAGTAAGGAAGTC
1 G-CAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TAAGGTAAAGAAGTC
* * * * * * * * * *
1554236 TTCAATGTCAAAGTCGATAGGTAAACTAAAGGTAAAAAAGTTTCAAAAGTCAAAGCTAACAG
64 TCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GACAA
*
1554298 GCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGTAGACTGCAGACTAAGGGT-AA
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGAC----AG---GCAGACTAA-GGTAAA
* * * * * * *
1554362 GAAAGTATCCAGGGTTAAAG-CTGATAGGCAGACTAAGGGCAAAGAAGTTTCTAAGATCAAAGCC
58 G-AAGTCTCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-C
1554426 GACAA
120 GACAA
* ** * * *
1554431 GCAAACTAAAGGTAAGGAAGTCACTAGGGTTAAAGTC-AGTAGGCAGACTAATGGTAAAGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGA-CAGGCAGACTAA-GGTAAAGAAGTC
* * * ** * * * *
1554495 TCCAAGGACAAAGCCGACT-GGCAAACTAAAGGTATGGAAGTCTCT-AGTGTCGAAGTTGGCAG
64 TCCAAGGTCAAAGTCGA-TAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCAAAG-CGACAA
* * * * * ** * *
1554557 GTAGACTAAAGGTAAAAAAATCTCTAGGGTTAAAGCCAACACACAGGCTAAAGGTAAGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * ** * * * * *
1554622 TC-AGTGTCAAAG-CTGATAGGCAAACTAAAAATAAGGAAGTTTC-AAGGGCCAAAGTTGATAA
65 CCAAG-GTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAA-GGTCAAAG-CGACAA
* * * * * * * * * * *
1554683 GAAAACTAAAGGTAAAGAAGTCTCCAAGATC-AAGGCTGATAAGCAAACTAAAGGT-GAGAAAGT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACT-AAGGTAAAG-AAGT
** * * *
1554746 CTATAAGGTCAAAATCGATA-GCTAGACTACAAGTAAAGGCAAAGAAGTCTCAAAGGTCAAAGTC
63 CTCCAAGGTCAAAGTCGATAGGC-AG---AC---TAAAGGTAAAGAAGTCTCTAAGGTCAAAG-C
*
1554810 GACAG
120 GACAA
* * * * *
1554815 GCAGACTAAAAGTAAAAAAAGTCTCAAGGGT-AATA-ACAAACAGGCAGACTATGGT-AAGAAAG
1 GCAGACTAAAGGT-AAAAAAGTCTCTAGGGTCAA-AGTC-GACAGGCAGACTAAGGTAAAG-AAG
* * * * * * * * * * *
1554877 TCTCTATGGTCAAAGCCGACAAGCAGACTAAAGATAAAGAAGTGTCCAAGGTCGAAGCAAAAAA
62 TCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GACAA
** * * * * * * *
1554941 ATAGAGTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCCAACAAGCAGACTAAGGGTAAAAAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAA-GGTAAAGAAGTCT
* * * * * * * * * * * *
1555006 CTAAGTTTAAAG-CTAACAAGCAAACTGAGGGTGAAA-TAGCCT-TCAGCGTCAAAGCCGACAA
65 CCAAGGTCAAAGTC-GATAGGCAGACTAAAGGT-AAAGAAGTCTCTAAG-GTCAAAG-CGACAA
* ** * ** * * *
1555067 GCAAACTAAAGGTAAGGAAGTCTCCAAAGTCAAAGCCGATAGGCAGACTAAAGGTAAGGAA-TCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* ** * * * * * *
1555131 CCAAGGTCTAAGAT-GGCAGGCAAATTGAAGGTAAGGAAAT-TTTCAAGGTCAAAGCCGAC-A
65 CCAAGGTCAAAG-TCGATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAG-CGACAA
* * * * * * ** * * *
1555191 GAAAAACTAATGGTAAAGAAGTCACTAAGGTCAAAGTTTATAGGCAAACTAAAGACTAAAGATAA
1 G-CAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAG-GT----A-AA
* * * * *
1555256 GAAAGTCTCCAGGGACAAAG-CTGATAGGTAGACTAAGGGTAAAGAAGTCTCTATGGTCAAAGCT
58 G-AAGTCTCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-
*
1555320 GATAA
120 GACAA
** * ** * * * *
1555325 ATAGACTAAAGGTTAGGATGTCTCTAAGGTCAAAGTGGACA-GCAAGACTAGGGGTAAAGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGC-AGACTA-AGGTAAAGAAGTC
* * * * *** * *
1555389 TCTAGGGTCAAAG-CTGACAGGCAAACTAAAGGTGTGGAAGTCTC-CAGTGTCAAAGCCA-ATA
64 TCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCAAAGCGACA-A
* * * * * * * * *
1555450 GGCAGACTAAAGGTAAAGAAGTCTCCAGGGTTAAAGCCAATAAGTAGACTAAAGGTAAGGAAGTC
1 -GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTC
* * * * * * * * * *
1555515 TCCAAGGTTAAAGTCAATAGGTAGACTAAAGGTAAGGAAGTTTTTAGGGTCAAAACCGATAG
64 TCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC-AAAGCGACAA
* * ** * * **
1555577 GCAAACTAAAGGTAAAGAAGTCTCTATAGTCAAAGCCGACAGGTAGACTAAAGGTAGGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * * *
1555642 CCAAAGTCAAAGCCGACAAGTAGACA-ACTAGTAAGGGTAAAGAAGTCTCTAAGGTTAAAGTCGA
65 CCAAGGTCAAAGTCG---A-TAGGCAGACTA--AA-GGTAAAGAAGTCTCTAAGGTCAAAG-CGA
* *
1555706 TAG
122 CAA
* * * * * * *
1555709 GTAGACTAAAGGTAAAAAAGTCT-TCAAGGTCAAAGCCAACAAGCAGACTAGGGTAAAAAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTCGACAGGCAGACTAAGGTAAAGAAGTCT
* * * * * * **
1555773 CCAAGGTCAAAGCCGATAAGCAGACTATAGATAAGGAAGTCT-TCAAAGTCAAAATGAACAA
65 CCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAGCG-ACAA
* * * * * *
1555834 GCAGACTAAAGGTAAAAAAGTCTCTAAGGTCGAAA-CCAACAAGCTGACTAAGGGTAAGGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTC-AAAGTCGACAGGCAGACTAA-GGTAAAGAAGTC
* * * * * * * * *
1555898 TCTAAGGTCAAAG-CTGA-CGAGCAAACAAAAAGTAAAGAAGTTTCTAGGGTCAAAGCCTACAG
64 TCCAAGGTCAAAGTC-GATAG-GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* ** * * * ** * * * * * *
1555960 GTAGACTAAAGGTAAGGAAGTTTCCAAGGTCAAAACCGA-TGAGTAAACTAAAGGCAAAGAGGTT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAG-GCAGACT-AAGGTAAAGAAGTC
* * * * *
1556024 TCTAAGGTCAAAGTCGATAGGCAGACTAAAGACTAAGGGTAAAAAAGTCTCCATGGTCAAAGCTA
64 TCCAAGGTCAAAGTCGATAGGCAGACT----A--AA-GGTAAAGAAGTCTCTAAGGTCAAAGC-G
*
1556089 AAAA
121 ACAA
* * * * * **
1556093 GCAGACTAAGGGCAAAAAAAGTCTCTAAGGTCAAAGCCGAAAAACAGACTAAAGGTAAAGAAGTC
1 GCAGACTAAAGG-TAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTC
* * * * * * * * * *
1556158 TCTAAGGTCATATTCGACAGGTAAATTAACGGTAAATAAGTCT-TCAAGGTCAAAGCTGACAG
64 TCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAGC-GACAA
* * * *
1556220 GTCAGACTAAAGGTATAGAAGTCTCTAGTGTCAAA-ACTGACAGGCAGACTAAAGGTAAAGAAGT
1 G-CAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACT-AAGGTAAAGAAGT
* * * * * * *
1556284 CT-CTAGGTTCAAAGTCGATCGACAGAGT-AAGGTAAGGAAATCT-TTAGTGTCAAAGCTGACAA
63 CTCCAAGG-TCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCAAAGC-GACAA
* * * * * * *
1556346 GTAGTCTAAAGGCTAAGGGTATTAAAGTCTCTAAGGTCAAAGCCGATAGGTAGACTAAATGTAAA
1 GCAGACTAAAGG-TAA----A--AAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAA
* * * * * * ** * * *
1556411 -AATGTTTTCAAGGTCCAA-TCTGACAAGTAGACTAAAGGT-GTGAAAGCCTCCAAGGTTAAAGT
58 GAA-GTCTCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCAAAG-
1556473 CGACAA
119 CGACAA
* * * * * * * * **
1556479 GAAGACTAAAGGTAAAGGAAGTCTCCAAGGTTAAAGCCAACAGGCAGATTAAAGGTATGGAAG-C
1 GCAGACTAAAGGTAAA-AAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTC
* * * * * * *
1556543 -CTATAGGATCAAAGTCGACAGGCAAACTAAAGGTAAA-AAGGTCTCTAGGGTTATAGTCGACAG
64 TCCA-AGG-TCAAAGTCGATAGGCAGACTAAAGGTAAAGAA-GTCTCTAAGGTCAAAG-CGACAA
** * * * *
1556606 GCAGACTAAAGGTAAGGAAGTCTC-AAGGTCAAAGTAGATAGGCAGACTAGAGGTAAGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTA-AGGTAAAGAAGTCT
* * * ** * * * * * *
1556670 CTAGGGTCAAAG-CGCACAAACAAACTAAAGGTAAGGAAGTCTCCAAGGTCAATGCCAGCAG
65 CCAAGGTCAAAGTCG-ATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCGA-CAA
* ** * * * * * * * * *
1556731 GCAAACTAAAGGTAAGGAACTTTCCAAGGTTAAAATCGAGAGGCAAACTATAAGTTAGGGTAAAA
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGAC--T-A---A-GGTAAAG
** * * * * * * *
1556796 AAGTAGCCAAGGCCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTTAAAGTCGAT
59 AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGAC
1556861 AA
123 AA
* * * * * *
1556863 GCAAACTAAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAAGCAGACTAAATGT-AAGAAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAG-AAGTC
* * * * * * * * *
1556927 TACAAGGTTAAA-ACCACCAGGTAAACTACAGGCAAAGGTAAAAAAGTCTCCAAGGTCAAAGTC-
64 TCCAAGGTCAAAGTCGA-TAGGCAGACT------AAAGGTAAAGAAGTCTCTAAGGTCAAAG-CG
1556990 AGCAA
121 A-CAA
* * * * * *
1556995 GCAAACTAAAGGTAAAAAAGTCTCCAAGGTCTAAGCCGACTGGCAGACTAAGGTAAAGAAGTCTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAGGTAAAGAAGTCTC
* * * ** * *
1557060 CAAAGTCAAAG-CTGACAAGCTAAAGACTAAAGGT-GTGAAAGTCTCTAAGGTTAAAGCCGATAA
66 CAAGGTCAAAGTC-GATAGGC---AGACTAAAGGTAAAG-AAGTCTCTAAGGTCAAAG-CGACAA
* * * * * * * ***
1557123 GCAGACTAAGGGTAAAAAAGTCTCTAAGGTTAGAGCCGACAAGTAGACTAAAGGTGTGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* ** * * * *
1557188 CCAAGGTCAAAGTTGGCATGTAGACTAATGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAG
65 CCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * *** * * * * *
1557249 GCAGATTAAAAGTATGGAAG-CTTATAGGGTCAACGTCGATAAGCAGACTAAAGGAAAAGAAGTC
1 GCAGACTAAAGGTAAAAAAGTC-TCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTC
* * * * * * * *
1557313 TCCAAGGTTAAAGCCGACAAGCAGACTAAAGGTAAGGAAGTC-CCACA-GTCAAAATCGATAA
64 TCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTA-AGGTC-AAAGCGACAA
** * * **
1557374 GCAGACTAAAGGTAAGGAAGTCTAC-AAGGTCAAAGCCGTTAGGCAGACTGCAGGTAAGGGTAAA
1 GCAGACTAAAGGTAAAAAAGTCT-CTAGGGTCAAAGTCGACAGGCAGA---C---TAA-GGTAAA
* * * * * * * * * * *
1557438 GAAGTCTCTAAAGTCAAAATCGACAAGCAAACTAAAAGTAAAAAAGTGT-TCAGGGTTAAAGCTG
58 GAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAGC-G
*
1557502 ACAG
121 ACAA
* * * * * * *
1557506 GCAAACTAAGGGTAAAGAAGTC-CTAGGGTCAAAGCCAATAGGCAGACTAAAGGTAAGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * * ** * * *
1557570 ACAAAGTCAAAGCCCCTAGGCAGACTACAAGTTTAGGTAAAGAAGTCTCTAAGTTTAAAGTGGAC
65 CCAAGGTCAAAGTCGATAGGCAGACT--AA----AGGTAAAGAAGTCTCTAAGGTCAAAG-CGAC
1557635 AA
123 AA
* * ** * * * * * ** *
1557637 GCAAACTAAAGGTAAAAAAGTCTCCAACGTTAAAGCCAACAAGTAGACTAAGGTTATGGAACTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAGG-TAAAGAAGTCT
* * * *
1557702 CTAAGGTTAAAG-CTGATAGGTAGACTAAAAGTAAA-ATAGTCTCTAAGGTCAAAGTCGACAA
65 CCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGA-AGTCTCTAAGGTCAAAG-CGACAA
** * * * ** * *
1557763 ATA-AGTTAAAGGTAAGAAAGTCTCCAACGTCAAA-ACTAACAGGCAGACTAAAGGT-AAGAAAG
1 GCAGA-CTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACT-AAGGTAAAG-AAG
** * * * ** * * *
1557825 TCTTTAAGGTCAAAGTTGACAGCCAGGGTAAAAGTAAAGAAGTC-CTCAAGGTCAAAGCCAACAG
62 TCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAG-CGACAA
* * * * * * * *
1557889 GTA-AGCTAAAGGTAAAGAAGT-TTTCAAGGTCAAAGCCAACAAGCAAACTAAAGGTAAAGAAGT
1 GCAGA-CTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGT
* * * * * * * * *
1557952 CACCAAGGTCAAAGCCAATAGACAAACTAAAGATAAGGAAGTCTCCAAGGTTAAAGCAGACAA
63 CTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GACAA
* ** * * * * * *
1558015 GCAAACTAAAGGTAAAAAAGTCTCTAAAGTCAAAAGCCAATAAGCAGACTAAGGGCAAGGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTC-AAAGTCGACAGGCAGACTAA-GGTAAAGAAGTC
* * * ** *
1558080 TCTAGGGTCAAAG-CTGACAGATAGACT-AAGAGCAAA-ATAG-CGTAC-AAGGTCAAAGTCGAC
64 TCCAAGGTCAAAGTC-GATAGGCAGACTAAAG-GTAAAGA-AGTC-T-CTAAGGTCAAAG-CGAC
*
1558140 AG
123 AA
* * ** * * *
1558142 GAAGACTAAAGGTAAAGAAA-TCTCCATAGTCAAAGTCGACAGGCAGAATAACAGTAAGGAAG-C
1 GCAGACTAAAGGTAAA-AAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAA-GGTAAAGAAGTC
* * ** * *
1558205 ATTCCGA-GTCAAAGTTGACCGGCAGACTAAAGGTAAAGAAGTCTCCAAGGTTAAAGTCGAC-A
64 --TCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * ** * * *
1558267 GATAGATTGAAA-ATAAGGAAGTCTCCAAGGTCAAAG-CGGACAAGCAGACTAAAGGTAAAGAAG
1 G-CAGACT-AAAGGTAAAAAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACT-AAGGTAAAGAAG
* ** * * * * * * *
1558330 TCTCTAAGGTCAAAAACCAACAAGCAGACTAAGGGTAAGGAAGTCTCTATGGTCAAAGCTA-ATA
62 TCTCCAAGGTC-AAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCGACA-A
** * * * * * * *
1558394 GGTGGGCTAAGGGT-AAAAAGTCT-TCAGGGTTAAAGCCGATAGGAAGACTAAAGGTAAGGAAGT
1 -GCAGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGT
* * * * * * * *
1558457 CTCTAGGGTCAAAGTCGACAAGCAAACTAAAGGTAAGGAAATCT-TGAGAGTCAAAGCTGACAA
63 CTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCAAAGC-GACAA
* * * * *
1558520 GCAAACTAAAGGTAAAGAAGTC-CATAAGGTCAAAGTTGATAGGCAGACTACAGGTAAGGGTAAA
1 GCAGACTAAAGGTAAAAAAGTCTC-TAGGGTCAAAGTCGACAGGCAG---AC---TAA-GGTAAA
* * * * * * * * *
1558584 GAAATCTCCAGGGTCAAAGTCGACATGTATATTAAAGGT-ATGAAGCCTAC-AAGGTCAAAGCTG
58 GAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCT-CTAAGGTCAAAGC-G
*
1558647 ACAG
121 ACAA
* * * * * * *
1558651 GCAAACTAAAGG-AAAAGAAGTCTTTAGGGTTAAAGCCAATAGGTAGACTAAGGGTAAAGAAG--
1 GCAGACTAAAGGTAAAA-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAA-GGTAAAGAAGTC
* * * * *
1558713 TCC----T-TAAG--G-TAAGCAGACTAAAAGGTAAGGAAGTCTAC-AAGGTCAAAATC-ACCAG
64 TCCAAGGTCAAAGTCGATAGGCAGACT-AAAGGTAAAGAAGTCT-CTAAGGTC-AAAGCGA-CAA
* * * * * *
1558768 GCAAACTAAAGGTAAGGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAAGTAGACTGAAGGTAAAA
1 GCAGACTAAAGGT-A----AAA-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAG
* * * * *
1558833 AAGTCTTCACGGTCAAAGCCGACT-GGCAGACTAAGGGT-AAGAATGTC-CCAAGGTCAAAGCCG
59 AAGTCTCCAAGGTCAAAGTCGA-TAGGCAGACTAAAGGTAAAGAA-GTCTCTAAGGTCAAAG-CG
*
1558895 ACAG
121 ACAA
* ** * ** * * * *
1558899 GTAGACTAAAGGTAAGGAAGCCTAC-AATGTCAAAGCCGCCAAGCAAACTACAGGTAAGGGTAAA
1 GCAGACTAAAGGTAAAAAAGTCT-CTAGGGTCAAAGTCGACAGGC--A-GAC---TAA-GGTAAA
* * * * * * * * * *
1558963 GAAGTCTACAAAGTCAAAGTTGACAAGTAAACTAAAAGTAAAAAACTCTCTAAGGTCAAAGCTGA
58 GAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GA
*
1559028 CAT
122 CAA
* * ** * * * * * * * * *
1559031 GCAAACT-ATGGTAAGGAAGT-TTTCAAGGTCAAAGCCAATAAGCAGACTAAAGATAAGGAAGTT
1 GCAGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTC
* * * * * * *
1559094 TTCAAGGTCAAAG-CTGACAAGTA-AGCTAAAAGTAAAAAAGTCTCTAAGGTCAAAGCCAACAA
64 TCCAAGGTCAAAGTC-GATAGGCAGA-CTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * ** * * *
1559156 ACAGACTAAGGGTATGAAACTCTCTAAGGTCAAAG-CTGATA-GCTAGACTAAGGGTAAA-ATAG
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTC-GACAGGC-AGACTAA-GGTAAAGA-AG
** * * * * * * *
1559218 TCTTTATGGTCAAAGAT-AATAGACCGACTAAAGGTAAGGAAGTCTCCAAGGTTAAAGCTGACAA
62 TCTCCAAGGTCAAAG-TCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGC-GACAA
* ** * * * * * *
1559282 GTAGACTAAAGGTAAGGAAGTCT-TCAGGGTCAAAGCCAACAGCCAGGCAAAAAGTAAAGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTCGACAGGCAGAC-TAAGGTAAAGAAGTC
* * * * * * * *
1559346 -CTCAAGGTCAAAGCCGACAGTCTA-CCTAAAGGTAAAGAAGTTTCCAAGGTCAAAGCCGATAG
64 TC-CAAGGTCAAAGTCGATAGGC-AGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * * * ** * * * * * *
1559408 GTAAATTGAAGGTAAAGAAGTGACCAAGGTCAAAGTCGACTA-GCAGATTAAAGATAAGGAAGTT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGAC-AGGCAGACT-AAGGTAAAGAAGTC
* * * * * * *
1559472 TCCAAGGTCAAAG-CAGACAAGCAAACTAAAGGTAAAAAAGTCTCTAAGGCCAAAAGCTAATAA
64 TCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC-AAAGC-GACAA
* ** * * *
1559535 GCAGACTAAGGGTAAGGAAGTCTCTAGGGTCAAAG-CTGATAAGTAGACTAAGGGTAAA-ACTA-
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACTAA-GGTAAAGA--AG
** * * * * * * * *
1559597 TCTTTAGGGTCAAAGTCAATAGGCAAACTAAAAGT-AAG-GGTATCTAGGGTCAAAGCCGACAG
62 TCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * *
1559659 GCAAACTAAAGG-AAAAAAGTCTAC-AAGGTCAAAG-CGGACAAGCAGACTAAAGGTAAAAAAGT
1 GCAGACTAAAGGTAAAAAAGTCT-CTAGGGTCAAAGTC-GACAGGCAGACT-AAGGTAAAGAAGT
* ** * * * * * * * * * * * *
1559721 CTCCAAGGTTAAAACCAACAAGCATACTGAGGGTAAGGAACTCTCTAGGGTCAAAGTTGATAG
63 CTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * * * * * * * ** * *
1559784 GTAGACTAAGGGTAAAATAGTCCCCAAGATCAAAATTGACAAACAAACTAAAAGT-AAGAAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAG-AAGTC
** * * * * *
1559848 TCCAAAATCAAAG-CTGATAGGCAAACTAATGGTAAGGAAGTCT-TAGGGTCAAAGCCGA-TA
64 TCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* ** * * *
1559908 GCCAAAAAAAAAAAG-AAAAAAGTC-CTCAGAGTCAAAG-CTGACAGGCTA-CCTAAAGG-AAAG
1 G-C--AGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTC-GACAGGC-AGACT-AAGGTAAA-
* * * * * * * *
1559968 GAAGTTTCCAAGGTCAAAGTCGATAGGTAAACTAAAGGTAAGGAAGTCACCAAGGTTAAAATCGA
58 GAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGG-TCAAAGCGA
1560033 CAA
122 CAA
* * * * * * * * * * *
1560036 GTAAACTAAAGATAAGAAACTTTCCAAGGTCAAAGTGGACAAGCAAACTAAAGGTAAAGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * * * * * * * * *
1560101 CTAGGGTCAAAGCCGACATGCAGATTAAAGGTAAGGAAATCTCCAAGGTCAAAGTCGACAG
65 CCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * * * * * * * *
1560162 GAAGACTACAAGTCAAGGTAAAATAGTCTCCAAGGTCAAACTTGATAGGCAGATTAAAGGTAAGG
1 GCAGACT---A---AAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAG
* * * * * * * *
1560227 AAGTCTCTAACGTCAAAGTCGACAGGTAGACTAAAAGTAAGGAAGTCT-TCAGGGTCAAAACCGA
59 AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCT-AAGGTC-AAAGCGA
*
1560291 CAG
122 CAA
* * * * * * * * * * * *
1560294 GCAAACTAAAAGTGAAGAATTCTCCAAGGTTAAAGTCGACAAGCAAACTAAAGGTGAAGAATTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGTCT
* * * * * * * ** * *
1560359 CCAAGGTTAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTAC-AAGTTCAAAATAGCCAG
65 CCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCT-CTAAGGTC-AAAGCGACAA
* * * * * * *
1560420 GCAGACTACAGATAAGGGTAAAGAAGTCTCCAAGGTCAAAGCCGACAAGTAGACTAAAAGTAAAA
1 GCAGACT----A-AA-GGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACT-AAGGT-AAA
* * * **** * * * ** * * *
1560485 AAAATATTTTTGGTCAAAGCCGACT-GGTAAACT-AAGGCGAGGAAGTCTCAAAGGTCAAAGCCA
58 GAAGTCTCCAAGGTCAAAGTCGA-TAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCGA
1560548 TCAA
122 -CAA
* * * *
1560552 GCAGACTAAAGACTAAAGGTATGAAAGTCTCTAGGGTCAAAGCCGATAGGCAAACTAAGGGTAAA
1 GCAGACTAAAG-GT-AA---A--AAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAA-GGTAAA
* * * ** * *
1560617 GAAGTCTCCAAGGTCAAAG-CTGACAAGTAGACTAAAGGTATGGAAGTCCCTAGGGTCAAAGTCG
58 GAAGTCTCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CG
*
1560681 ATAA
121 ACAA
* * * * * * * * * **
1560685 GGAAAGTAAAAGTAAAAAAGTCT-TGAAGGTCAAA-ACTGATAGGCATATTAAAGGTATGGAAGT
1 GCAGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTC-GACAGGCAGACT-AAGGTAAAGAAGT
* * * * * * *
1560748 TTCCAGGGTCAAAG-CTGACAGGCAGACTAAAGGTAAAGAAGTCTCCAGGGTTAAAACCGACAA
63 CTCCAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGG-TCAAAGCGACAA
* * * * * *
1560811 GTAAACTACAAGTAAGGGTAAAAAAGTCTCCAAGGTCAAAGAT-GACAGGTAAACTAAAGGTAAA
1 GCAGACT---A--AA-GGTAAAAAAGTCTCTAGGGTCAAAG-TCGACAGGCAGACT-AAGGTAAA
* * * * * * * * * *
1560875 AAACTCT-CTAGGATCAAAG-CTGACAGGCAAACT-ATGGTAAGGAAGTCTCTAAAGACAAAACC
58 GAAGTCTCCAAGG-TCAAAGTC-GATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTC-AAAGC
* *
1560937 GATAG
120 GACAA
** ** * * ** * *** *
1560942 GCA-AGCTAAAAATAAGGAAGTCTCCAAGGTTGAAG-CAGGAAAAAAAGACTAAAGGTAAAAAAG
1 GCAGA-CTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTC--GACAGGCAGACT-AAGGTAAAGAAG
* * * * * * * * * * *
1561005 TCTCCAAGGTCAAAGCCAACAAGCAGAATAAGGGTAAAGAACTCTCGAAGGTCAAAGTTGATAG
62 TCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAG-CGACAA
* * ** * *
1561069 GCAGACTAAGGGTAAAATAA-TCT-TCAGGGTTAAAACCGATAGGCAGACTAAAGGTAAGGAAGT
1 GCAGACTAAAGGTAAAA-AAGTCTCT-AGGGTCAAAGTCGACAGGCAGACT-AAGGTAAAGAAGT
* * * * * * * *
1561132 CT--AAGTTTAAAGTTGACAGACATACTAAAGGT-AAGAAAGTCT-TCATGGTCAAAGTTGAC-A
63 CTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAG-AAGTCTCT-AAGGTCAAAG-CGACAA
* * * * * * *
1561192 GCTAGACAAAAAGTAAAGAAGTCT-TCAAGGTCAAAGCCAACAGGCTA-CCTAAAGGTAAAGAAG
1 GC-AGACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAGTCGACAGGC-AGACT-AAGGTAAAGAAG
* * * * * * * * *
1561255 TTTCCAAGGTCCAAGCCGATAGGCAAACTAAAGGTAAAAAAAATCTCCAAGGCCAAAGTCGATAG
62 TCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGT-AAAGAAGTCTCTAAGGTCAAAG-CGACA-
1561320 GTA
124 --A
* * * * * * * * * * *
1561323 GACTAAAGACTAAGGGTTAAAAAGTCTTTAGGGTTAAAGCCGATAGACGGACAAAGGGCAAAGAG
1 G-C---AGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAA-GGTAAAGAA
* * * * * * ** *
1561388 GTCTCTAAGGTCAATA-CCGACAAGTAGACTAAAGAT-AAGAAAACCTCTAAGGTTAAAGCGAAC
61 GTCTCCAAGGTCAA-AGTCGATAGGCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCAAAGCG-AC
1561451 AA
123 AA
* * * * * * * * * *
1561453 GCAGACTATAGATAAAAAAGTGTCCAAGGTGAAAGCCAACTA-GTAGACTAAAGGTAACGAAGTC
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGAC-AGGCAGACT-AAGGTAAAGAAGTC
* * * * *
1561517 TCCAAGGTCAAAGCCGACAAGTAGACTACAGGTCAGGGTAAAGAAGTCTCCAAGGTCAAAGTCGA
64 TCCAAGGTCAAAGTCGATAGGCAGACTA-A----A-GGTAAAGAAGTCTCTAAGGTCAAAG-CGA
*
1561582 CAG
122 CAA
* * * * * * *
1561585 GTAGACTCAAGGTAAAAAAATCTCTAGGGTCAAAGCCGACAAGCAGACTATGGTAAGGAAGTCT
1 GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAGGTAAAGAAGTCT
1561649 TCTTGGCCAA
Statistics
Matches: 6214, Mismatches: 1641, Indels: 1021
0.70 0.18 0.12
Matches are distributed among these distances:
115 5 0.00
116 8 0.00
117 30 0.00
118 7 0.00
119 2 0.00
122 1 0.00
123 106 0.02
124 175 0.03
125 978 0.16
126 2212 0.36
127 576 0.09
128 128 0.02
129 50 0.01
130 36 0.01
131 415 0.07
132 870 0.14
133 413 0.07
134 200 0.03
135 2 0.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (124 bp):
GCAGACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAGGTAAAGAAGTCTC
CAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCGACAA
Found at i:1554395 original size:49 final size:49
Alignment explanation
Indices: 1554302--1554395 Score: 109
Period size: 49 Copynumber: 1.9 Consensus size: 49
1554292 TAACAGGCAA
* * *
1554302 ACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGTCGACAGGTAGACTGCAG
1 ACTAAAGGTAAAAAAGTATCCAGGGTCAAAGTCGACAGGCAGACTGCAG
* * * *
1554351 ACTAAGGGTAAGAAAGTATCCAGGGTTAAAG-CTGATAGGCAGACT
1 ACTAAAGGTAAAAAAGTATCCAGGGTCAAAGTC-GACAGGCAGACT
1554396 AAGGGCAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
48 1 0.03
49 36 0.97
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (49 bp):
ACTAAAGGTAAAAAAGTATCCAGGGTCAAAGTCGACAGGCAGACTGCAG
Found at i:1556125 original size:43 final size:42
Alignment explanation
Indices: 1556053--1556167 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 42
1556043 GGCAGACTAA
* * *
1556053 AGACTAAGGGTAAAAAAGTCTCCATGGTCAAAG-CTAAAAAGC
1 AGACTAAGGGTAAAAAAGTCTCTAAGGTCAAAGCCGAAAAA-C
*
1556095 AGACTAAGGGCAAAAAAAGTCTCTAAGGTCAAAGCCGAAAAAC
1 AGACTAAGGG-TAAAAAAGTCTCTAAGGTCAAAGCCGAAAAAC
* *
1556138 AGACTAAAGGTAAAGAAGTCTCTAAGGTCA
1 AGACTAAGGGTAAAAAAGTCTCTAAGGTCA
1556168 TATTCGACAG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
42 28 0.44
43 30 0.47
44 6 0.09
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.16
Consensus pattern (42 bp):
AGACTAAGGGTAAAAAAGTCTCTAAGGTCAAAGCCGAAAAAC
Found at i:1556886 original size:174 final size:174
Alignment explanation
Indices: 1556629--1557093 Score: 429
Period size: 174 Copynumber: 2.7 Consensus size: 174
1556619 AAGGAAGTCT
* * * * **
1556629 CAAGGTCAAAGTAGATAGGCAGACTAGAGGTAAGGAAGTCTCTAGGGTCAAAGCGCACAAACAAA
1 CAAGGTCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGCGCACAAACAAA
** * * * * *
1556694 CTAAAGGTAAGGAAGTCTCCAAGGTCAATGCC-AGCAGGCAAACTAAAGGTAAGGAACTTTCCAA
66 CTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCCGA-CAAGCAAACTAAAGGTAAGAAACTCTACAA
* * * ** *
1556758 GGTTAAAATCGA-GAGGCAAACTATAAGTTAGGGTAAAAAAGTAGC
130 GGTTAAAA-CCACCAGGCAAACTACAAGCAAAGGTAAAAAAGTAGC
* * * *
1556803 CAAGGCCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTTAAAGTCG-ATAAGCAA
1 CAAGGTCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAG-CGCACAAACAA
* * * * *
1556867 ACTAAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAAGCAGACTAAATGTAAGAAAGTCTACAA
65 ACTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCCGACAAGCAAACTAAAGGTAAGAAACTCTACAA
* * **
1556932 GGTTAAAACCACCAGGTAAACTACAGGCAAAGGTAAAAAAGTCTC
130 GGTTAAAACCACCAGGCAAACTACAAGCAAAGGTAAAAAAGTAGC
* * * * ***
1556977 CAAGGTCAAAGTC-AGCAAGCAAACTAAAGGTAAAAAAGTCTCCAAGGTCTAAGC-CGACTGGCA
1 CAAGGTCAAAGTCGA-CAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGCGC-ACAAACA
* * * *
1557040 GACT-AAGGTAAAGAAGTCTCCAAAGTCAAAGCTGACAAGCTAAAGACTAAAGGT
64 AACTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCCGACAAGC--AA-ACTAAAGGT
1557094 GTGAAAGTCT
Statistics
Matches: 233, Mismatches: 49, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
173 35 0.15
174 186 0.80
175 4 0.02
176 8 0.03
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.16
Consensus pattern (174 bp):
CAAGGTCAAAGTCGACAGGCAAACTAAAGGTAAAAAAGTCTCTAGGGTCAAAGCGCACAAACAAA
CTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCCGACAAGCAAACTAAAGGTAAGAAACTCTACAAG
GTTAAAACCACCAGGCAAACTACAAGCAAAGGTAAAAAAGTAGC
Found at i:1557689 original size:173 final size:173
Alignment explanation
Indices: 1557284--1557689 Score: 494
Period size: 173 Copynumber: 2.3 Consensus size: 173
1557274 AGGGTCAACG
* * *
1557284 TCGATAAGCAGACTAAAGG-AAAAGAAGTCTCCAAGGTTAAAGCCGACAAGCAGACTAAAGGTAA
1 TCGACAAGCAAACTAAAGGTAAAA-AAGTCTCCAAGGTTAAAGCCGACAAGCAGACTAAGGGTAA
* * * * **
1557348 GGAAGTCCCACAGTCAAAATCGATAAGCAGACTAAAGGTAAGGAAGTCTACAAGGTCAAAGCCGT
65 AGAAGTCCCACAGTCAAAACCAATAAGCAGACTAAAGGTAAGGAAGTCTACAAAGTCAAAGCCCC
*
1557413 TAGGCAGACTGCAGGTAAGGGTAAAGAAGTCTCTAAAGTCAAAA
130 TAGGCAGACTACAGGTAAGGGTAAAGAAGTCTCTAAAGTCAAAA
* * * * * * *
1557457 TCGACAAGCAAACTAAAAGTAAAAAAGTGTTCAGGGTTAAAGCTGACAGGCAAACTAAGGGTAAA
1 TCGACAAGCAAACTAAAGGTAAAAAAGTCTCCAAGGTTAAAGCCGACAAGCAGACTAAGGGTAAA
* ** * *
1557522 GAAGTCCTAGGGTCAAAGCCAATAGGCAGACTAAAGGTAAGGAAGTCTACAAAGTCAAAGCCCCT
66 GAAGTCCCACAGTCAAAACCAATAAGCAGACTAAAGGTAAGGAAGTCTACAAAGTCAAAGCCCCT
* * * *
1557587 AGGCAGACTACAAGTTTA-GGTAAAGAAGTCTCT-AAGTTTAAAG
131 AGGCAGACTAC-AGGTAAGGGTAAAGAAGTCTCTAAAG-TCAAAA
* * * *
1557630 TGGACAAGCAAACTAAAGGTAAAAAAGTCTCCAACGTTAAAGCCAACAAGTAGACTAAGG
1 TCGACAAGCAAACTAAAGGTAAAAAAGTCTCCAAGGTTAAAGCCGACAAGCAGACTAAGG
1557690 TTATGGAACT
Statistics
Matches: 193, Mismatches: 37, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
172 3 0.02
173 182 0.94
174 8 0.04
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (173 bp):
TCGACAAGCAAACTAAAGGTAAAAAAGTCTCCAAGGTTAAAGCCGACAAGCAGACTAAGGGTAAA
GAAGTCCCACAGTCAAAACCAATAAGCAGACTAAAGGTAAGGAAGTCTACAAAGTCAAAGCCCCT
AGGCAGACTACAGGTAAGGGTAAAGAAGTCTCTAAAGTCAAAA
Found at i:1559106 original size:173 final size:173
Alignment explanation
Indices: 1558722--1559107 Score: 440
Period size: 173 Copynumber: 2.2 Consensus size: 173
1558712 GTCCTTAAGG
** *
1558722 TAAGCAGACTAAAAGGTAAGGAAGTCTACAAGGTCAAAATCACCAGGCAAACTAAAGGTAAGGGT
1 TAAGCAGACT-AAAGGTAAGGAAGTCTACAAGGTCAAAGCCACCAAGCAAACTAAAGGTAAGGGT
* * * * * *
1558787 AAAGAAGTCTCTAAGGTCAAAGCCGACAAGTAGACTGAAGGTAAAAAAGTCTTCACGGTCAAAGC
65 AAAGAAGTCTCTAAAGTCAAAGCCGACAAGTAAACTAAAAGTAAAAAACTCTTCAAGGTCAAAGC
* *
1558852 CGACTGGCAGACTAAGGGTAAGAATGTCCCAAGGTCAAAGCCGA
130 CGACTGGCAAACTAAGGGTAAGAATGTCCCAAGGTCAAAGCCAA
* * * * * * *
1558896 CAGGTAGACTAAAGGTAAGGAAGCCTACAATGTCAAAGCCGCCAAGCAAACTACAGGTAAGGGTA
1 TAAGCAGACTAAAGGTAAGGAAGTCTACAAGGTCAAAGCCACCAAGCAAACTAAAGGTAAGGGTA
**
1558961 AAGAAGTCTAC-AAAGTCAAAGTTGACAAGTAAACTAAAAGTAAAAAACTC-TCTAAGGTCAAAG
66 AAGAAGTCT-CTAAAGTCAAAGCCGACAAGTAAACTAAAAGTAAAAAACTCTTC-AAGGTCAAAG
* * **
1559024 CTGACAT-GCAAACT-ATGGTAAGGAA-GTTTTCAAGGTCAAAGCCAA
129 CCGAC-TGGCAAACTAAGGGTAA-GAATG-TCCCAAGGTCAAAGCCAA
* * *
1559069 TAAGCAGACTAAAGATAAGGAAGTTTTCAAGGTCAAAGC
1 TAAGCAGACTAAAGGTAAGGAAGTCTACAAGGTCAAAGC
1559108 TGACAAGTAA
Statistics
Matches: 175, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
172 9 0.05
173 157 0.90
174 9 0.05
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.17
Consensus pattern (173 bp):
TAAGCAGACTAAAGGTAAGGAAGTCTACAAGGTCAAAGCCACCAAGCAAACTAAAGGTAAGGGTA
AAGAAGTCTCTAAAGTCAAAGCCGACAAGTAAACTAAAAGTAAAAAACTCTTCAAGGTCAAAGCC
GACTGGCAAACTAAGGGTAAGAATGTCCCAAGGTCAAAGCCAA
Found at i:1559543 original size:43 final size:42
Alignment explanation
Indices: 1559490--1559593 Score: 127
Period size: 43 Copynumber: 2.5 Consensus size: 42
1559480 CAAAGCAGAC
* *
1559490 AAGCAAACTAAAGGTAAAAAAGTCTCTAAGGCCAAAAGCTAAT
1 AAGCAGACTAAGGGTAAAAAAGTCTCTAAGGCC-AAAGCTAAT
** * * *
1559533 AAGCAGACTAAGGGTAAGGAAGTCTCTAGGGTCAAAGCTGAT
1 AAGCAGACTAAGGGTAAAAAAGTCTCTAAGGCCAAAGCTAAT
*
1559575 AAGTAGACTAAGGGTAAAA
1 AAGCAGACTAAGGGTAAAA
1559594 CTATCTTTAG
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 24 0.47
43 27 0.53
ACGTcount: A:0.45, C:0.13, G:0.24, T:0.17
Consensus pattern (42 bp):
AAGCAGACTAAGGGTAAAAAAGTCTCTAAGGCCAAAGCTAAT
Found at i:1559756 original size:165 final size:166
Alignment explanation
Indices: 1559477--1559777 Score: 358
Period size: 165 Copynumber: 1.8 Consensus size: 166
1559467 AAGTTTCCAA
* *
1559477 GGTCAAAGCAGACAAGCAAACTAAAGGTAAAAAAGTCTCTAAGGCCAAAAGCTAATAAGCAGACT
1 GGTCAAAGCAGACAAGCAAACTAAAGGTAAAAAAGTCTCTAAGGCCAAAAGCGAACAAGCAGACT
* ** * * * ** * * *
1559542 AAGGGTAAGGAAGTCTCTAGGGTCAAAGCTGATAAGTAGACTAAGGGTAA-AACTATCTTTAGGG
66 AAAGGTAAAAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTAAGGGTAAGAAC--TCTCTAGGG
1559606 TCAAAGTCAATAGGCAAACTAAAAGTAAGGGTATCTAG
129 TCAAAGTCAATAGGCAAACTAAAAGTAAGGGTATCTAG
* * * *
1559644 GGTCAAAGCCGACAGGCAAACTAAAGG-AAAAAAGTCTAC-AAGGTC-AAAGCGGACAAGCAGAC
1 GGTCAAAGCAGACAAGCAAACTAAAGGTAAAAAAGTCT-CTAAGGCCAAAAGCGAACAAGCAGAC
* * *
1559706 TAAAGGTAAAAAAGTCTCCAAGGTTAAAACCAACAAGCATACTGAGGGTAAGGAACTCTCTAGGG
65 TAAAGGTAAAAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTAAGGGTAA-GAACTCTCTAGGG
1559771 TCAAAGT
129 TCAAAGT
1559778 TGATAGGTAG
Statistics
Matches: 111, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
165 67 0.60
166 15 0.14
167 29 0.26
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (166 bp):
GGTCAAAGCAGACAAGCAAACTAAAGGTAAAAAAGTCTCTAAGGCCAAAAGCGAACAAGCAGACT
AAAGGTAAAAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTAAGGGTAAGAACTCTCTAGGGTC
AAAGTCAATAGGCAAACTAAAAGTAAGGGTATCTAG
Found at i:1560285 original size:216 final size:216
Alignment explanation
Indices: 1559974--1560378 Score: 474
Period size: 216 Copynumber: 1.9 Consensus size: 216
1559964 AAAGGAAGTT
* * * *
1559974 TCCAAGGTCAAAGTCGATAGGTAAACTAAAGGTAAGGAAGTCACCAAGGTTAAAATCGACAAGTA
1 TCCAAGGTCAAACTCGATAGGCAAACTAAAGGTAAGGAAGTCACCAACGTCAAAATCGACAAGTA
*** * *
1560039 AACTAAAGATAAGAAACTTTCCAAGGTCAAAGTGGACAAGCAAACTAAAGGTAAAGAAGTCTCTA
66 AACTAAAGATAAGAAACTTTCCAAGGTCAAAACCGACAAGCAAACTAAAAGTAAAGAAGTCTCCA
* * * * *
1560104 GGGTCAAAGCCGACATGCAGATTAAAGGT-AAGGAAATCTCCAAGGTCAAAGTCGACAGGAAGAC
131 AGGTCAAAGCCGACAAGCAAACTAAAGGTGAA-GAAATCTCCAAGGTCAAAGCCGACAGGAAGAC
1560168 TACAAGTCAAGGTAAAATAGTC
195 TACAAGTCAAGGTAAAATAGTC
* * * * * * *
1560190 TCCAAGGTCAAACTTGATAGGCAGATTAAAGGTAAGGAAGTCTCTAACGTCAAAGTCGACAGGTA
1 TCCAAGGTCAAACTCGATAGGCAAACTAAAGGTAAGGAAGTCACCAACGTCAAAATCGACAAGTA
* * * * * * *
1560255 GACTAAA-AGTAAGGAAGTCTT-CAGGGTCAAAACCGACAGGCAAACTAAAAGTGAAGAATTCTC
66 AACTAAAGA-TAAGAAACT-TTCCAAGGTCAAAACCGACAAGCAAACTAAAAGTAAAGAAGTCTC
* * * *
1560318 CAAGGTTAAAGTCGACAAGCAAACTAAAGGTGAAGAATTCTCCAAGGTTAAAGCCGACAGG
129 CAAGGTCAAAGCCGACAAGCAAACTAAAGGTGAAGAAATCTCCAAGGTCAAAGCCGACAGG
1560379 CAAACTAAAG
Statistics
Matches: 154, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
215 1 0.01
216 149 0.97
217 4 0.03
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (216 bp):
TCCAAGGTCAAACTCGATAGGCAAACTAAAGGTAAGGAAGTCACCAACGTCAAAATCGACAAGTA
AACTAAAGATAAGAAACTTTCCAAGGTCAAAACCGACAAGCAAACTAAAAGTAAAGAAGTCTCCA
AGGTCAAAGCCGACAAGCAAACTAAAGGTGAAGAAATCTCCAAGGTCAAAGCCGACAGGAAGACT
ACAAGTCAAGGTAAAATAGTC
Found at i:1560322 original size:258 final size:258
Alignment explanation
Indices: 1559958--1560459 Score: 638
Period size: 258 Copynumber: 1.9 Consensus size: 258
1559948 ACAGGCTACC
* * * *
1559958 TAAAGGAAAGGAAGTTTCCAAGGTCAAAGTCGATAGGTAAACTAAAGGTAAGGAAGTCACCAAGG
1 TAAAGGAAAGGAAGTCTCCAACGTCAAAGTCGACAGGTAAACTAAAAGTAAGGAAGTCACCAAGG
* * * *
1560023 TTAAAATCGACAAGTAAACTAAAGATAAGAAACTTTCCAAGGTCAAAGTGGACAAGCAAACTAAA
66 TCAAAACCGACAAGCAAACTAAAGATAAGAAACTTTCCAAGGTCAAAGTCGACAAGCAAACTAAA
* * * * * *
1560088 GGTAAAGAAGTCTCTAGGGTCAAAGCCGACATGCAGATTAAAGGTAAGGAAATCTCCAAGGTCAA
131 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGGTCAA
* *
1560153 AGTCGACAGGAAGACTACA-AGTCAA-GGTAAA-ATAGTCTCCAAGGTCAAACTTGATAGGCAGA
196 AATAGACAGGAAGACTACAGA-T-AAGGGTAAAGA-AGTCTCCAAGGTCAAACTTGATAGGCAGA
1560215 T
258 T
* * * ** *
1560216 TAAAGGTAAGGAAGTCTCTAACGTCAAAGTCGACAGGTAGACTAAAAGTAAGGAAGTCTTCAGGG
1 TAAAGGAAAGGAAGTCTCCAACGTCAAAGTCGACAGGTAAACTAAAAGTAAGGAAGTCACCAAGG
* *
1560281 TCAAAACCGACAGGCAAACTAAA-AGTGAAG-AA-TTCTCCAAGGTTAAAGTCGACAAGCAAACT
66 TCAAAACCGACAAGCAAACTAAAGA-T-AAGAAACTT-TCCAAGGTCAAAGTCGACAAGCAAACT
* * * *
1560343 AAAGGTGAAGAATTCTCCAAGGTTAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGTT
128 AAAGGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGGT
* *
1560408 CAAAATAGCCAGGCAGACTACAGATAAGGGTAAAGAAGTCTCCAAGGTCAAA
193 CAAAATAGACAGGAAGACTACAGATAAGGGTAAAGAAGTCTCCAAGGTCAAA
1560460 GCCGACAAGT
Statistics
Matches: 208, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
257 5 0.02
258 198 0.95
259 5 0.02
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (258 bp):
TAAAGGAAAGGAAGTCTCCAACGTCAAAGTCGACAGGTAAACTAAAAGTAAGGAAGTCACCAAGG
TCAAAACCGACAAGCAAACTAAAGATAAGAAACTTTCCAAGGTCAAAGTCGACAAGCAAACTAAA
GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGGTCAA
AATAGACAGGAAGACTACAGATAAGGGTAAAGAAGTCTCCAAGGTCAAACTTGATAGGCAGAT
Found at i:1560530 original size:258 final size:258
Alignment explanation
Indices: 1559980--1560661 Score: 558
Period size: 258 Copynumber: 2.6 Consensus size: 258
1559970 AGTTTCCAAG
* * * * ** * * * * *
1559980 GTCAAAGTCGATAGGTAAACTAAAGGTAAGGAAGTCACCAAGGTTAAAATCGACAAGTAAACT-A
1 GTCAAAGCCGACAGGTAAACTAAAAGCAAGGAAGTCTTCAGGGTCAAAACCGACAGGCAAACTAA
* * *
1560044 AAGAT-AAGAAACTT-TCCAAGGTCAAAGTGGACAAGCAAACTAAAGGTAAAGAAGTCTCTAGGG
66 AAG-TGAAG-AA-TTCTCCAAGGTCAAAGTCGACAAGCAAACTAAAGGTAAAGAAGTCTCCAAGG
* * * * * *
1560107 TCAAAGCCGACATGCAGATTAAAGGTAAGGAAATCTCCAAGGTCAAAGTCGACAGGAAGACTACA
128 TCAAAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGGTCAAAATAGACAGGAAGACTACA
* * * * * ** * *
1560172 AGTCAAGGTAAAATAGTCTCCAAGGTCAAACTTGATAGGCAGATTAAAGGTAAGGAAGTCTCTAA
193 AGTCAAGGTAAAATAGTCTCCAAGGTCAAACTCGACAAGCAGACTAAAAGTAAAAAAATATCTAA
1560237 C
258 C
* * *
1560238 GTCAAAGTCGACAGGTAGACTAAAAGTAAGGAAGTCTTCAGGGTCAAAACCGACAGGCAAACTAA
1 GTCAAAGCCGACAGGTAAACTAAAAGCAAGGAAGTCTTCAGGGTCAAAACCGACAGGCAAACTAA
* * * *
1560303 AAGTGAAGAATTCTCCAAGGTTAAAGTCGACAAGCAAACTAAAGGTGAAGAATTCTCCAAGGTTA
66 AAGTGAAGAATTCTCCAAGGTCAAAGTCGACAAGCAAACTAAAGGTAAAGAAGTCTCCAAGGTCA
* * *
1560368 AAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGTTCAAAATAGCCAGGCAGACTAC-AGA
131 AAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGGTCAAAATAGACAGGAAGACTACAAG-
* *
1560432 T-AAGGGTAAAGA-AGTCTCCAAGGTCAAAGC-CGACAAGTAGACTAAAAGTAAAAAAAATATTT
195 TCAA-GGTAAA-ATAGTCTCCAAGGTCAAA-CTCGACAAGCAGACTAAAAGT-AAAAAAATATCT
***
1560494 TTG
256 AAC
* * * * *
1560497 GTCAAAGCCGACTGGTAAACT-AAGGCGAGGAAGTC-TCAAAGGTCAAAGCC-ATCAAGCAGACT
1 GTCAAAGCCGACAGGTAAACTAAAAGCAAGGAAGTCTTC-AGGGTCAAAACCGA-C-AG--G-C-
* * * * * * * * *
1560559 AAAGACTAAAGGT-ATGAAAGTCTCTAGGGTCAAAGCCGATAGGCAAACTAAGGGTAAAGAAGTC
59 -AA-ACTAAAAGTGAAG-AATTCTCCAAGGTCAAAGTCGACAAGCAAACTAAAGGTAAAGAAGTC
* * * * *
1560623 TCCAAGGTCAAAGCTGACAAGTAGACTAAAGGTATGGAA
121 TCCAAGGTCAAAGCCGACAGGCAAACTAAAGGTAAGGAA
1560662 GTCCCTAGGG
Statistics
Matches: 340, Mismatches: 66, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
257 9 0.03
258 211 0.62
259 36 0.11
261 1 0.00
262 1 0.00
264 4 0.01
265 78 0.23
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (258 bp):
GTCAAAGCCGACAGGTAAACTAAAAGCAAGGAAGTCTTCAGGGTCAAAACCGACAGGCAAACTAA
AAGTGAAGAATTCTCCAAGGTCAAAGTCGACAAGCAAACTAAAGGTAAAGAAGTCTCCAAGGTCA
AAGCCGACAGGCAAACTAAAGGTAAGGAAATCTACAAGGTCAAAATAGACAGGAAGACTACAAGT
CAAGGTAAAATAGTCTCCAAGGTCAAACTCGACAAGCAGACTAAAAGTAAAAAAATATCTAAC
Found at i:1560907 original size:90 final size:90
Alignment explanation
Indices: 1560744--1560908 Score: 204
Period size: 90 Copynumber: 1.8 Consensus size: 90
1560734 AAAGGTATGG
* * * * * * * *
1560744 AAGTTTCCAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAGAAGTCTCCAGGGTTAAAACCGAC
1 AAGTCTCCAAGGTCAAAGATGACAGGCAAACTAAAGGTAAAAAACTCTCCAGGATCAAAACCGAC
*
1560809 AAGTAAACTACAAGTAAGGGTAAAA
66 AAGCAAACTACAAGTAAGGGTAAAA
* * * *
1560834 AAGTCTCCAAGGTCAAAGATGACAGGTAAACTAAAGGTAAAAAACTCTCTAGGATCAAAGCTGAC
1 AAGTCTCCAAGGTCAAAGATGACAGGCAAACTAAAGGTAAAAAACTCTCCAGGATCAAAACCGAC
*
1560899 AGGCAAACTA
66 AAGCAAACTA
1560909 TGGTAAGGAA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 61 1.00
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (90 bp):
AAGTCTCCAAGGTCAAAGATGACAGGCAAACTAAAGGTAAAAAACTCTCCAGGATCAAAACCGAC
AAGCAAACTACAAGTAAGGGTAAAA
Found at i:1561318 original size:43 final size:42
Alignment explanation
Indices: 1561217--1561330 Score: 104
Period size: 43 Copynumber: 2.7 Consensus size: 42
1561207 AAGAAGTCTT
* * * * * * * *
1561217 CAAGGTCAAAGCCAACAGGCTACCTAAAGGTAAAGAAGTTTC
1 CAAGGTCCAAGCCGATAGGCAAACTAAAGGTAAAAAAATCTC
1561259 CAAGGTCCAAGCCGATAGGCAAACTAAAGGTAAAAAAAATCTC
1 CAAGGTCCAAGCCGATAGGCAAACTAAAGGT-AAAAAAATCTC
* * *
1561302 CAAGG-CCAAAGTCGATAGGTAGACTAAAG
1 CAAGGTCC-AAGCCGATAGGCAAACTAAAG
1561331 ACTAAGGGTT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (42 bp):
CAAGGTCCAAGCCGATAGGCAAACTAAAGGTAAAAAAATCTC
Found at i:1561482 original size:42 final size:42
Alignment explanation
Indices: 1561388--1561634 Score: 153
Period size: 42 Copynumber: 5.7 Consensus size: 42
1561378 GGGCAAAGAG
* *
1561388 GTCTCTAAGGTCAATACCG-ACAAGTAGACTAAAGATAAGAAAA
1 GTCTCCAAGGTCAA-AGCGAACAAGTAGACTAAAGATAA-AAAA
* * * * *
1561431 -CCTCTAAGGTTAAAGCGAACAAGCAGACTATAGATAAAAAA
1 GTCTCCAAGGTCAAAGCGAACAAGTAGACTAAAGATAAAAAA
* * * * * **
1561472 GTGTCCAAGGTGAAAGCCAACTAGTAGACTAAAGGTAACGAA
1 GTCTCCAAGGTCAAAGCGAACAAGTAGACTAAAGATAAAAAA
* *
1561514 GTCTCCAAGGTCAAAGCCG-ACAAGTAGACTACAGGTCAGGGTAAAGAA
1 GTCTCCAAGGTCAAAG-CGAACAAGTAGACTA-A----A-GATAAAAAA
* * *
1561562 GTCTCCAAGGTCAAAGTCG-ACAGGTAGACTCAAGGTAAAAAA
1 GTCTCCAAGGTCAAAG-CGAACAAGTAGACTAAAGATAAAAAA
* * * *
1561604 ATCTCTAGGGTCAAAGCCG-ACAAGCAGACTA
1 GTCTCCAAGGTCAAAG-CGAACAAGTAGACTA
1561635 TGGTAAGGAA
Statistics
Matches: 163, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
41 7 0.04
42 115 0.71
43 3 0.02
47 2 0.01
48 36 0.22
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.17
Consensus pattern (42 bp):
GTCTCCAAGGTCAAAGCGAACAAGTAGACTAAAGATAAAAAA
Found at i:1562794 original size:28 final size:27
Alignment explanation
Indices: 1562738--1562809 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
1562728 GGAATGAAAC
**
1562738 CGGGGTTGGAGTATTCCCTCGGAGGTAA
1 CGGGGTTGGAGTA-TCCCTCGGAAATAA
1562766 CGGGGTTGGAGTATCCC-CGATGAAATAA
1 CGGGGTTGGAGTATCCCTCG--GAAATAA
*
1562794 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
1562810 TCGCTTGTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 33 0.85
ACGTcount: A:0.22, C:0.18, G:0.36, T:0.24
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCTCGGAAATAA
Found at i:1562959 original size:51 final size:50
Alignment explanation
Indices: 1562797--1562982 Score: 196
Period size: 51 Copynumber: 3.6 Consensus size: 50
1562787 GAAATAACGA
* * * *
1562797 GGTTGGAGTATCCTCGCTTGTGAAAATTTGGTGTTTTTTGGAAATAAAAT-GG
1 GGTTGGAGTATCCTCGATTATGAAAAATTAGTG--TTTT-GAAATAAAATCGG
* * * *
1562849 GAGTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGG
1 G-GTTGGAGTATCCTCGATT-ATGAAAAATTAGTGTTTTG-AAATAAAATCGG
* *
1562902 GATTGGAGTAT-CTCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCT-CGATTATGAAAAATTAGTGTTTT-GAAATAAAATCGG
1562953 GGTTGGAGTATCCTCGATTATGAAAAATTA
1 GGTTGGAGTATCCTCGATTATGAAAAATTA
1562983 AGAAACTTAA
Statistics
Matches: 111, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
51 53 0.48
52 30 0.27
53 19 0.17
54 9 0.08
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33
Consensus pattern (50 bp):
GGTTGGAGTATCCTCGATTATGAAAAATTAGTGTTTTGAAATAAAATCGG
Found at i:1565364 original size:21 final size:21
Alignment explanation
Indices: 1565338--1565378 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1565328 TCAAAGATCG
1565338 ATGTATCGAAAAATTTCCTTA
1 ATGTATCGAAAAATTTCCTTA
* *
1565359 ATGTATCGATACATTTCCTT
1 ATGTATCGAAAAATTTCCTT
1565379 GGCAGTAGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (21 bp):
ATGTATCGAAAAATTTCCTTA
Found at i:1565436 original size:32 final size:32
Alignment explanation
Indices: 1565395--1565467 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
1565385 AGCTTCGTAG
*
1565395 CGATACATTGTATCAATACAAAACTTATGTAT
1 CGATACATTGTATCAATACAAAACTCATGTAT
* *
1565427 CGATACATTGTATCGATACAACACTCATGTAT
1 CGATACATTGTATCAATACAAAACTCATGTAT
1565459 CGATACATT
1 CGATACATT
1565468 TTCTGTTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCAATACAAAACTCATGTAT
Found at i:1565440 original size:13 final size:13
Alignment explanation
Indices: 1565422--1565446 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1565412 ACAAAACTTA
1565422 TGTATCGATACAT
1 TGTATCGATACAT
1565435 TGTATCGATACA
1 TGTATCGATACA
1565447 ACACTCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1565494 original size:19 final size:19
Alignment explanation
Indices: 1565434--1565495 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
1565424 TATCGATACA
*
1565434 TTGTATCGATACAACACT-C
1 TTGTATCGATACAA-ACTGT
* **
1565453 ATGTATCGATACATTTTCTGT
1 TTGTATCGATACA--AACTGT
1565474 TTGTATCGATACAAACTGT
1 TTGTATCGATACAAACTGT
1565493 TTG
1 TTG
1565496 AAGTTCAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 19 0.58
20 2 0.06
21 12 0.36
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (19 bp):
TTGTATCGATACAAACTGT
Found at i:1565811 original size:42 final size:42
Alignment explanation
Indices: 1565764--1568070 Score: 404
Period size: 42 Copynumber: 54.8 Consensus size: 42
1565754 AAGCCAATAG
*
1565764 GCAGACTGAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * ** * * * *
1565806 ACAGACTAAAAGTTAGAAAGT-TTTAGGGTCAAAGCTGATAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * * *
1565847 GCAGCCAAAAAGTAAAAAAGTCTCGAAGGTCAAAGCTGACAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * *
1565889 GCAAACTAAAGGTGAGGAAGTTTCCAAGGTCAAAA-TCGACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACT-GACAA
*
1565931 GCA-ACCAAAAGGTAA-AGAAGTCTCCAAGGTCAAAGTCAACAGGTAGACTAA
1 GCAGA-CTAAAGGTAAGA-AAGTCTCCAAGGTC-AA---AAC---T-GAC-AA
** * * * * * *
1565982 --AGACTATGGGTAAGAGAGTCTCCATGG-CCAAAGTCGATAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACT-GACAA
* * * *
1566022 GCAGACTAAGGGTAA-AGAAGTCTCCAAGGTCAAAGCCGATAA
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * * ** * *
1566064 GTAGATTAAAAGTAA-AGAAGTCTCTAAGGTCAAAGTTGAGAG
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * **
1566106 GTAGACTAAAGGTAA-AAAGGTCTCCAAGATCAAAGCTGACCG
1 GCAGACTAAAGGTAAGAAA-GTCTCCAAGGTCAAAACTGACAA
* * * * * ***
1566148 GCAAACTAATGGTATA-AAAGTCTCTAATGTC-AAAGTCGATGG
1 GCAGACTAAAGGTA-AGAAAGTCTCCAAGGTCAAAACT-GACAA
* *** * * *
1566190 GCAAACTAAAGGTAA-AGAAGTCTCCATCATTAAAGCCGACAA
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * * ** * * * *
1566232 GAAAAGTAAAGGTAA-AGAACTCTCCCGGGTC-TAAGTCAACAG
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACT-GACAA
* * * * ** * *
1566274 GCAGACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGTTGATAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * *
1566316 GCAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCGATAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * *
1566358 GCAGACTATAGGTAAGGGTAAAGAAGTCTCCAAGGTCATAGCCGA-TA
1 GCAGACTAAAGGTAA--G---A-AAGTCTCCAAGGTCAAAACTGACAA
* * * * * *
1566405 GACAGACTAAAGGCAAAAAAGTCTCTAGGGTC-AAAGTCGACGA
1 G-CAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACT-GACAA
* * * ** * * *
1566448 GCAGA-TTAAGATGAGGAAA-TCTTTAAGGTC-AAAGTCGATAG
1 GCAGACTAAAGGT-AAGAAAGTCTCCAAGGTCAAAACT-GACAA
* *
1566489 GCAGACTAAAGATAA-AGAAGTCTCCAAGGTC-AAAGTGAACAA
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTG-ACAA
* * * * **
1566531 GCAGACTAAAGGTAAAAAAATCTCAAAGGTCAAAGCCAACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * **
1566573 GTAGACTAAAGGTAAAAAAGTCTCAAAGGTCATAGCCAACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * *
1566615 GCAGA-TTAAGTGTAA-AGACGTCTCC-AGGATCAAAGCCGACAG
1 GCAGACTAAAG-GTAAGA-AAGTCTCCAAGG-TCAAAACTGACAA
* * * * * * * *
1566657 GCACACAAAAAGTAA-AGAACTCTCCAGGGTCAAAGCTAACAG
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * *
1566699 GCATACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCTGACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * *
1566740 GCAGACTAAAGATAA-AGAAGTCTCCAAGATC-AAGC-GAACAA
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTG-ACAA
* * * * * * **
1566781 GTAGACTAAAGGTAAAAAAATATTCAAGGTCAAAGCCAACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * *
1566823 GCAGACTAAGGGTAAG-GAGTCTCTAGGGTCAAAGCTGATAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
** * * ** *
1566864 ATAGACTAAGGGTAA-AATAGTCTCCAAGGTCAAAGCCAACAG
1 GCAGACTAAAGGTAAGAA-AGTCTCCAAGGTCAAAACTGACAA
* * * * *
1566906 GCAGACTAAAGGTAAGGATGTCTCCAAGGCCAAAGCCGAC-A
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * * *
1566947 GACAAACT--AGGTATA-AAAGGTCTTTACAA---CCAAGCCGATAG
1 G-CAGACTAAAGGTA-AGAAA-GTC--TCCAAGGTCAAAACTGACAA
* * ** * *
1566988 GTAGGC-AAAAATAA-AGAAGTCTCCAAGGTCAAAACCGATAA
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * * * **
1567029 GCAAACTAGAGGTAAGAAAGTTTCTAGGGTCAAAGGT-A-AA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
** * * * * ** * *
1567069 AAAGTCTCTAGGGT--TAAAGTCGGC-AGGT----A--GCCTA
1 GCAGACT-AAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * *
1567103 -TAGACTAAGGGTAAGAAAGTCTCCAAGGAT-AAAGCTGATAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGG-TCAAAACTGACAA
* * * * * * * *
1567144 GCAGACTAAGGGTAAAAAAGTCTCCAAGATTAAAGCCGATAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * * *
1567186 GCAAACTAAGGGCAA-AGAAGTTTCTAAGGTCAAAGCCGACAA
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * * *
1567228 GCAGACTAAAAGTGAAG-AAGTCTCTAAAGTC-AAAGTCGACAG
1 GCAGACTAAAGGT-AAGAAAGTCTCCAAGGTCAAAACT-GACAA
* * * *
1567270 GCAGAC-AATGGTAA-AGAAGTCTCCAAGGTC-AAAGTCAACAG
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACT-GACAA
* * * * * * *
1567311 GCAGACTAAAGGTATGAAAGT-TTCTAGTGTCGAAGCTGATAG
1 GCAGACTAAAGGTAAGAAAGTCTCCAAG-GTCAAAACTGACAA
* * * * * * *
1567353 GTAGACTAAAGGTAAAAAAGTCTCTAGGGTTAAAGCCGACACA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACA-A
* * * * *
1567396 -TAGACTAACA-GTAAGGAAGTCTCCAATGTCAAAACCGACAG
1 GCAGACTAA-AGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * * *
1567437 GCAAATTAAAGGTAAGGAAGTCTCTAAGGTCAAAGCCGAAAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * * ** *
1567479 GCAAACTAAAGGTAAGGAAGTTTCTAGGGTCAAGGCCGACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* *
1567521 GCAAACTAAAGGTAATG-AAGTCTCCAAGGT-AAAAGTTGAC-A
1 GCAGACTAAAGGTAA-GAAAGTCTCCAAGGTCAAAA-CTGACAA
* * * *
1567562 GCCAGACCATAGTTAAAGGTAAAAAAGCCT-CAATGGTCAAAGCCGAC-A
1 G-CAGA-C-----TAAAGGTAAGAAAGTCTCCAA-GGTCAAAACTGACAA
* * * *
1567610 GACAGATTAAAGATAA-AGAAGTCTCCAAGGTC-GAAGTAGACAA
1 G-CAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACT-GACAA
* * * * *
1567653 GCAAAGTAAAGGTAAAAAAGTCTCAAAGGTCAAAGCT-AGCAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGA-CAA
* * * *
1567695 GCAGACTAAGGGTAA-AGAAGTCTCC-AGAGACAAAGCTGACAG
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAG-GTCAAAACTGACAA
* * * * * * *
1567737 GCAGACTGAGGGTGAA-ATAGTCTCC-ATGTCAAAGCCGACAG
1 GCAGACTAAAGGT-AAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * *
1567778 GTAGACTAAAGGTAA-AGAAGTCTTCAAGGTCAAAGCTGACAG
1 GCAGACTAAAGGTAAGA-AAGTCTCCAAGGTCAAAACTGACAA
* * * * * *
1567820 GCAGACTGAAGGTAAGGAAATTTTCCAA-GTCAAAGCCGA-TA
1 GCAGACTAAAGGTAA-GAAAGTCTCCAAGGTCAAAACTGACAA
* * * ** *
1567861 GACAAACTAATA-GTAAGGAAGTCTCTAAGGTCAAAGTTGATAGGTA
1 G-CAGACTAA-AGGTAAGAAAGTCTCCAAGGTCAAAACTGACA---A
* * * * *
1567907 GACTAAAGACTAAGGGTAAGGAAGTCTCTAAGGTCAAAGCTGACAG
1 G-C---AGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
* * * * ** *
1567953 GTAGACTAAGGGTCAA-AAAGTTTCC-AGAGTTAAAGTTGACAG
1 GCAGACTAAAGGT-AAGAAAGTCTCCAAG-GTCAAAACTGACAA
* * *
1567995 GCAGACTAAAGGTAAGGAAGTCTCCAAGGTC-AAAGTCAACAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACT-GACAA
* *
1568037 GCAGACTAAAGGTAAGAAAGTCTTCAGGGTCAAA
1 GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAA
1568071 GTCGACAGAC
Statistics
Matches: 1681, Mismatches: 439, Indels: 289
0.70 0.18 0.12
Matches are distributed among these distances:
32 5 0.00
33 4 0.00
34 8 0.00
35 3 0.00
36 1 0.00
38 7 0.00
39 5 0.00
40 34 0.02
41 299 0.18
42 1109 0.66
43 66 0.04
44 4 0.00
46 7 0.00
47 6 0.00
48 60 0.04
49 55 0.03
50 6 0.00
51 2 0.00
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
GCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAACTGACAA
Found at i:1565867 original size:83 final size:84
Alignment explanation
Indices: 1565775--1565964 Score: 204
Period size: 83 Copynumber: 2.3 Consensus size: 84
1565765 CAGACTGAAG
* * * * *
1565775 GTAAGAAAGTCTCCAAGGTCAAAACTGACAAACAGACTAAAAGTTAGAAAGTTT-TAGGGTC-AA
1 GTAAAAAAGTCTCCAAGGTCAAAACTGACAAACAAACTAAAAGTGAGAAAGTTTCCAAGGTCAAA
* * * *
1565838 AGCTGATAGGCAGCCAAAAA
66 ATC-GACAAGCAACCAAAAA
* * ** * *
1565858 GTAAAAAAGTCTCGAAGGTCAAAGCTGACAGGCAAACTAAAGGTGAGGAAGTTTCCAAGGTCAAA
1 GTAAAAAAGTCTCCAAGGTCAAAACTGACAAACAAACTAAAAGTGAGAAAGTTTCCAAGGTCAAA
*
1565923 ATCGACAAGCAACCAAAAG
66 ATCGACAAGCAACCAAAAA
*
1565942 GTAAAGAAGTCTCCAAGGTCAAA
1 GTAAAAAAGTCTCCAAGGTCAAA
1565965 GTCAACAGGT
Statistics
Matches: 87, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
83 45 0.52
84 38 0.44
85 4 0.05
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.16
Consensus pattern (84 bp):
GTAAAAAAGTCTCCAAGGTCAAAACTGACAAACAAACTAAAAGTGAGAAAGTTTCCAAGGTCAAA
ATCGACAAGCAACCAAAAA
Found at i:1566362 original size:84 final size:84
Alignment explanation
Indices: 1565764--1568098 Score: 997
Period size: 84 Copynumber: 27.7 Consensus size: 84
1565754 AAGCCAATAG
* * * * ** * * *
1565764 GCAGACTGAAGGT-AAGAAAGTCTCCAAGGTCAAAACTGACAAACAGACTAAAAGTTAGAAAGT-
1 GCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTC
** * * * *
1565827 TTTAGGGTCAAAGCTGATAG
65 TCCAAGGTCAAAGCCGACAA
* * * * * * * * *
1565847 GCAGCCAAAAAGTAAAAAAGTCTCGAAGGTCAAAGCTGACAGGCAAACTAAAGGTGAGGAAGTTT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
**
1565912 CCAAGGTCAAAATCGACAA
66 CCAAGGTCAAAGCCGACAA
* * * * *
1565931 GCA-ACCAAAAGGTAAAGAAGTCTCCAAGGTCAAAGTCAACAGGTAGACTAAAGACTATGGGTAA
1 GCAGA-CTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACT--A-A--A--GGTAA
* * * * *
1565995 -GAGAGTCTCCATGGCCAAAGTCGATAG
58 GGA-AGTCTCCAAGGTCAAAGCCGACAA
* * * * * * * *
1566022 GCAGACTAAGGGTAAAGAAGTCTCCAAGGTCAAAGCCGATAAGTAGATTAAAAGTAAAGAAGTCT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
* ** * *
1566087 CTAAGGTCAAAGTTGAGAG
66 CCAAGGTCAAAGCCGACAA
* * * * * * * *
1566106 GTAGACTAAAGGTAAA-AAGGTCTCCAAGATCAAAGCTGACCGGCAAACTAATGGTATA-AAAGT
1 GCAGACTAAAGGTAAAGAA-GTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTA-AGGAAGT
* * * ***
1566169 CTCTAATGTCAAAGTCGATGG
64 CTCCAAGGTCAAAGCCGACAA
* * *** * * * * * * *
1566190 GCAAACTAAAGGTAAAGAAGTCTCCATCATTAAAGCCGACAAGAAAAGTAAAGGTAAAGAACTCT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
** * * * *
1566255 CCCGGGTCTAAGTCAACAG
66 CCAAGGTCAAAGCCGACAA
* * * ** * *
1566274 GCAGACTAAAGGTAAGGAAGTTTCTAGGGTCAAAGTTGATAGGCAAACTAAAGGTAAGGAAGTCT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
*
1566339 CCAAGGTCAAAGCCGATAA
66 CCAAGGTCAAAGCCGACAA
* * * * * **
1566358 GCAGACTATAGGTAAGGGTAAAGAAGTCTCCAAGGTCATAGCCGATAGACAGACTAAAGGCAAAA
1 GCAGAC--TA---AA-GGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGG
* * * *
1566423 AAGTCTCTAGGGTCAAAGTCGACGA
60 AAGTCTCCAAGGTCAAAGCCGACAA
* * * * * * * * * *
1566448 GCAGA-TTAAGATGAGGAAATCTTTAAGGTCAAAGTCGATAGGCAGACTAAAGATAAAGAAGTCT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
*
1566512 CCAAGGTCAAAG-TGAACAA
66 CCAAGGTCAAAGCCG-ACAA
* * * * * * **
1566531 GCAGACTAAAGGTAAAAAAATCTCAAAGGTCAAAGCCAACAAGTAGACTAAAGGTAAAAAAGTCT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
* * *
1566596 CAAAGGTCATAGCCAACAA
66 CCAAGGTCAAAGCCGACAA
* * * * * * * *
1566615 GCAGA-TTAAGTGTAAAGACGTCTC-CAGGATCAAAGCCGACAGGCACACAAAAAGTAAAGAACT
1 GCAGACTAAAG-GTAAAGAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT
* ** *
1566678 CTCCAGGGTCAAAGCTAACAG
64 CTCCAAGGTCAAAGCCGACAA
* * * * * *
1566699 GCATACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCTGACAAGCAGACTAAAGATAAAGAAGTCT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
*
1566763 CCAAGATC-AAG-CGAACAA
66 CCAAGGTCAAAGCCG-ACAA
* * * * * * *
1566781 GTAGACTAAAGGTAAAAAAATAT-TCAAGGTCAAAGCCAACAAGCAGACTAAGGGTAAGG-AGTC
1 GCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTC
* * * *
1566844 TCTAGGGTCAAAGCTGATAA
65 TCCAAGGTCAAAGCCGACAA
** * * * *
1566864 ATAGACTAAGGGTAAA-ATAGTCTCCAAGGTCAAAGCCAACAGGCAGACTAAAGGTAAGGATGTC
1 GCAGACTAAAGGTAAAGA-AGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTC
*
1566928 TCCAAGGCCAAAGCCGAC-A
65 TCCAAGGTCAAAGCCGACAA
* * * * * * * ** *
1566947 GACAAACT--AGGTATAA-AAGGTCTTTACA--ACCAAGCCGATAGGTAGGC-AAAAATAAAGAA
1 G-CAGACTAAAGGTA-AAGAA-GTCTCTA-AGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAA
* *
1567006 GTCTCCAAGGTCAAAACCGATAA
62 GTCTCCAAGGTCAAAGCCGACAA
* * * * *** * * * *
1567029 GCAAACTAGAGGT-AAGAAAGTTTCTAGGGTCAAAG--GTA-AAAAAGTCTCTAGGGTTA--AAG
1 GCAGACTAAAGGTAAAG-AAGTCTCTAAGGTCAAAGCCG-ACAGGCAGACT-AAAGGTAAGGAAG
** *
1567088 TCGGC-AGGT---AG-C--CTA
63 TCTCCAAGGTCAAAGCCGACAA
* * * * * * **
1567103 -TAGACTAAGGGT-AAGAAAGTCTCCAAGGAT-AAAGCTGATAGGCAGACTAAGGGTAAAAAAGT
1 GCAGACTAAAGGTAAAG-AAGTCTCTAAGG-TCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT
* * * *
1567165 CTCCAAGATTAAAGCCGATAG
64 CTCCAAGGTCAAAGCCGACAA
* * * * * *
1567186 GCAAACTAAGGGCAAAGAAGTTTCTAAGGTCAAAGCCGACAAGCAGACTAAAAGTGAA-GAAGTC
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGT-AAGGAAGTC
* * * *
1567250 TCTAAAGTCAAAGTCGACAG
65 TCCAAGGTCAAAGCCGACAA
* * * * * *
1567270 GCAGAC-AATGGTAAAGAAGTCTCCAAGGTCAAAGTCAACAGGCAGACTAAAGGTATGAAAGT-T
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
* * * * * *
1567333 TCTAGTGTCGAAGCTGATAG
66 CCAAG-GTCAAAGCCGACAA
* * * * ***
1567353 GTAGACTAAAGGTAAAAAAGTCTCTAGGGTTAAAGCCGACACATAGACTAACA-GTAAGGAAGTC
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAA-AGGTAAGGAAGTC
* * *
1567417 TCCAATGTCAAAACCGACAG
65 TCCAAGGTCAAAGCCGACAA
* * * * * * *
1567437 GCAAATTAAAGGTAAGGAAGTCTCTAAGGTCAAAGCCGAAAAGCAAACTAAAGGTAAGGAAGTTT
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
* * *
1567502 CTAGGGTCAAGGCCGACAA
66 CCAAGGTCAAAGCCGACAA
* * * * ** * **
1567521 GCAAACTAAAGGTAATGAAGTCTCCAAGGTAAAAGTTGACAGCCAGACCATAGTTAAAGGTAAAA
1 GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-C-----TAAAGGTAAGG
*
1567586 AAGCCT-CAATGGTCAAAGCCGAC-A
60 AAGTCTCCAA-GGTCAAAGCCGACAA
* * * * ** * * * **
1567610 GACAGATTAAAGATAAAGAAGTCTCCAAGGTCGAAGTAGACAAGCAAAGTAAAGGTAAAAAAGTC
1 G-CAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTC
* *
1567675 TCAAAGGTCAAAG-CTAGCAA
65 TCCAAGGTCAAAGCCGA-CAA
* * * * * *
1567695 GCAGACTAAGGGTAAAGAAGTCTC-CAGAGACAAAGCTGACAGGCAGACTGAGGGTGAA--ATAG
1 GCAGACTAAAGGTAAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGACTAAAGGT-AAGGA-AG
* *
1567757 TCTCC-ATGTCAAAGCCGACAG
63 TCTCCAAGGTCAAAGCCGACAA
* * * *
1567778 GTAGACTAAAGGTAAAGAAGTCT-TCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGGAAATT
1 GCAGACTAAAGGTAAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGG-AAGT
* *
1567842 TTCCAA-GTCAAAGCCGA-TA
64 CTCCAAGGTCAAAGCCGACAA
* * ** * *
1567861 GACAAACTAATA-GTAAGGAAGTCTCTAAGGTCAAAGTTGATAGGTAGACTAAAGACTAAGGGTA
1 G-CAGACTAA-AGGTAAAGAAGTCTCTAAGGTCAAAGCCGACA-G--G-C---AGACTAAAGGTA
* * *
1567925 AGGAAGTCTCTAAGGTCAAAGCTGACAG
57 AGGAAGTCTCCAAGGTCAAAGCCGACAA
* * * * * **
1567953 GTAGACTAAGGGTCAAA-AAGTTTC-CAGAGTTAAAGTTGACAGGCAGACTAAAGGTAAGGAAGT
1 GCAGACTAAAGGT-AAAGAAGTCTCTAAG-GTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGT
* *
1568016 CTCCAAGGTCAAAGTCAACAA
64 CTCCAAGGTCAAAGCCGACAA
* * * * * *
1568037 GCAGACTAAAGGT-AAGAAAGTCT-TCAGGGTCAAAGTCGACAGACAAACTAAGGGTTAGGAAG
1 GCAGACTAAAGGTAAAG-AAGTCTCT-AAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAG
1568099 GAAGTTAAAA
Statistics
Matches: 1686, Mismatches: 451, Indels: 229
0.71 0.19 0.10
Matches are distributed among these distances:
73 25 0.01
74 9 0.01
75 6 0.00
76 7 0.00
77 4 0.00
80 6 0.00
81 46 0.03
82 57 0.03
83 406 0.24
84 825 0.49
85 28 0.02
86 4 0.00
87 4 0.00
88 3 0.00
89 7 0.00
90 135 0.08
91 110 0.07
92 4 0.00
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (84 bp):
GCAGACTAAAGGTAAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAGGAAGTCT
CCAAGGTCAAAGCCGACAA
Found at i:1567065 original size:24 final size:24
Alignment explanation
Indices: 1567038--1567087 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
1567028 AGCAAACTAG
* *
1567038 AGGTAAGAAAGTTTCTAGGGTCAA
1 AGGTAAAAAAGTCTCTAGGGTCAA
*
1567062 AGGTAAAAAAGTCTCTAGGGTTAA
1 AGGTAAAAAAGTCTCTAGGGTCAA
1567086 AG
1 AG
1567088 TCGGCAGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (24 bp):
AGGTAAAAAAGTCTCTAGGGTCAA
Found at i:1568003 original size:133 final size:132
Alignment explanation
Indices: 1567780--1568030 Score: 321
Period size: 133 Copynumber: 1.9 Consensus size: 132
1567770 GCCGACAGGT
*
1567780 AGACTAAAGGTAAAGAAGTCTTCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGGAAATTTTC
1 AGACTAAAGGTAAAGAAGTCTTCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA-GAAAGTTTC
* *
1567845 CAAGTCAAAGCCGATAGACAAACTAATA-GTAAGGAAGTCTCTAAGGTCAAAGTTGATAGGTAGA
65 CAAGTCAAAGCCGACAGACAAACTAA-AGGTAAGGAAGTCTCCAAGGTCAAAGTTGATAGGTAGA
1567909 CTAA
129 CTAA
* * *
1567913 AGACTAAGGGTAAGGAAGTC-TCTAAGGTCAAAGCTGACAGGTAGACT-AAGGGTCAA-AAAGTT
1 AGACTAAAGGTAAAGAAGTCTTC-AAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAAAGTT
* ** * *
1567975 TCCAGAGTTAAAGTTGACAGGCAGACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGT
63 TCCA-AGTCAAAGCCGACAGACAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGT
1568031 CAACAAGCAG
Statistics
Matches: 102, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
132 14 0.14
133 86 0.84
134 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (132 bp):
AGACTAAAGGTAAAGAAGTCTTCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTTTCC
AAGTCAAAGCCGACAGACAAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGTTGATAGGTAGACT
AA
Found at i:1568272 original size:44 final size:44
Alignment explanation
Indices: 1568218--1568632 Score: 213
Period size: 44 Copynumber: 9.4 Consensus size: 44
1568208 GAAGGGTTTG
* *
1568218 ACCAAGGTGGTAACCATACGTCAAACAGAAAGGAGAGAGATTTA
1 ACCAGGGTGGTAACCATACGTCAAACAGAAATGAGAGAGATTTA
* * * *
1568262 ACTAGGGTGGTAACCATACGTCAAATCAG-AATAAGA-AGAATGTG
1 ACCAGGGTGGTAACCATACGTCAAA-CAGAAATGAGAGAG-ATTTA
* * * * *
1568306 ACCAGGGTGGTAACCATAAGTTAGACTGAAATGAGACAGATTTA
1 ACCAGGGTGGTAACCATACGTCAAACAGAAATGAGAGAGATTTA
* * * ** * * * * *
1568350 ACCA-AGCGGTAACCATACATCAAATTGAAATAAAAAAAAATATA
1 ACCAGGGTGGTAACCATACGTCAAACAGAAAT-GAGAGAGATTTA
* * * * * * * *
1568394 ACTAGGGTTGTAACCATATGTCAGACTGAACTGAGA-AAAGTTTG
1 ACCAGGGTGGTAACCATACGTCAAACAGAAATGAGAGAGA-TTTA
* * * *
1568438 ACCAGGGTGGTAACCATATGTTAAATAGAACA-GA-AGTGAATTTA
1 ACCAGGGTGGTAACCATACGTCAAACAGAA-ATGAGAGAG-ATTTA
* * * * * *
1568482 ACGAAGGTGGTAACCATACATCAAATCA-AAATGA-AAAGAATCTG
1 ACCAGGGTGGTAACCATACGTCAAA-CAGAAATGAGAGAG-ATTTA
** * *
1568526 ACCAGGGTGGTAACCATATATCAGACTA-AAATGAGA-AAAGTTTA
1 ACCAGGGTGGTAACCATACGTCAAAC-AGAAATGAGAGAGA-TTTA
* * * * * *
1568570 ACCAGGGTGGTAACCATATGTCAAACATAAAGGAAAGGGATTTG
1 ACCAGGGTGGTAACCATACGTCAAACAGAAATGAGAGAGATTTA
1568614 ACCTA-GGTGGTAACCATAC
1 ACC-AGGGTGGTAACCATAC
1568633 ATCACATTAG
Statistics
Matches: 279, Mismatches: 74, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
43 32 0.11
44 218 0.78
45 29 0.10
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (44 bp):
ACCAGGGTGGTAACCATACGTCAAACAGAAATGAGAGAGATTTA
Found at i:1568455 original size:132 final size:127
Alignment explanation
Indices: 1568260--1568705 Score: 439
Period size: 132 Copynumber: 3.4 Consensus size: 127
1568250 GAGAGAGATT
* * *
1568260 TAACTAGGGTGGTAACCATACGTCA-AATCAGAATAAGAAGAA-TGTGACCAGGGTGGTAACCAT
1 TAACTAGGGTGGTAACCATACGTCAGACTGA-AATAAGAA-AAGTTTGACCAGGGTGGTAACCAT
* * * *
1568323 AAGTTAGACTGAAATGAGACAGATTTAACCAAGCGGTAACCATACATCAAATTGAAATAAAAAAA
64 ATGTTA-ACTGAAA-GA-AGAGATTTAACCAAGTGGTAACCATACATCAAATT-AAAT-AAAAAG
*
1568388 AATA
124 AATC
* * * *
1568392 TAACTAGGGTTGTAACCATATGTCAGACTGAACTGAGAAAAGTTTGACCAGGGTGGTAACCATAT
1 TAACTAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGTTTGACCAGGGTGGTAACCATAT
* * * * *
1568457 GTTAAATAGAACAGAAGTGAATTTAACGAAGGTGGTAACCATACATCAAATCAAAATGAAAAGAA
66 GTTAACT-GAA-AGAAGAG-ATTTAACCAA-GTGGTAACCATACATCAAAT-TAAATAAAAAGAA
1568522 TC
126 TC
* * ** * * *
1568524 TGACCAGGGTGGTAACCATATATCAGACTAAAATGAGAAAAGTTTAACCAGGGTGGTAACCATAT
1 TAACTAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGTTTGACCAGGGTGGTAACCATAT
* * * * *
1568589 GTCAAACAT-AAAGGAAAGGGATTTGACCTAGGTGGTAACCATACATCACATTAGAATAAAAAGA
66 GT-TAAC-TGAAA-G-AAGAGATTTAACC-AAGTGGTAACCATACATCAAATTA-AATAAAAAGA
1568653 ATC
125 ATC
*
1568656 TAACTAGGGTGGTAACCATACGTTAGACTGAAATAAGAAAAGTTTGACCA
1 TAACTAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGTTTGACCA
1568706 AGGACTAATC
Statistics
Matches: 260, Mismatches: 41, Indels: 26
0.80 0.13 0.08
Matches are distributed among these distances:
131 8 0.03
132 217 0.83
133 34 0.13
134 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (127 bp):
TAACTAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGTTTGACCAGGGTGGTAACCATAT
GTTAACTGAAAGAAGAGATTTAACCAAGTGGTAACCATACATCAAATTAAATAAAAAGAATC
Found at i:1568691 original size:44 final size:44
Alignment explanation
Indices: 1568218--1568691 Score: 202
Period size: 44 Copynumber: 10.8 Consensus size: 44
1568208 GAAGGGTTTG
* * * ** *
1568218 ACCAAGGTGGTAACCATACGTCAAACAGAAA-GGAGAGAGATTTA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAAAAAGA-ATTTA
* * * * * *
1568262 ACTAGGGTGGTAACCATACGTCA-AATCAGAATAAGAAGAATGTG
1 ACCAGGGTGGTAACCATACGTCAGACTGA-AATAAAAAGAATTTA
* * * *
1568306 ACCAGGGTGGTAACCATAAGTTAGACTGAAATGAGACAG-ATTTA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAAT-AAAAAGAATTTA
* * * * * * *
1568350 ACCA-AGCGGTAACCATACATCAAATTGAAATAAAAAAAAATATA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAAT-AAAAAGAATTTA
* * * * *
1568394 ACTAGGGTTGTAACCATATGTCAGACTGAACTGAGAAAAG--TTTG
1 ACCAGGGTGGTAACCATACGTCAGACTGAAAT-A-AAAAGAATTTA
* * * * **
1568438 ACCAGGGTGGTAACCATATGTTA-AATAGAACA-GAAGTGAATTTA
1 ACCAGGGTGGTAACCATACGTCAGACT-GAA-ATAAAAAGAATTTA
* * * * * * * *
1568482 ACGAAGGTGGTAACCATACATCA-AATCAAAATGAAAAGAATCTG
1 ACCAGGGTGGTAACCATACGTCAGACT-GAAATAAAAAGAATTTA
** *
1568526 ACCAGGGTGGTAACCATATATCAGACTAAAATGAGAAAAG--TTTA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAAT-A-AAAAGAATTTA
* * ** * * *
1568570 ACCAGGGTGGTAACCATATGTCAAACAT-AAAGGAAAGGGATTTG
1 ACCAGGGTGGTAACCATACGTCAGAC-TGAAATAAAAAGAATTTA
* * * *
1568614 ACCTA-GGTGGTAACCATACATCACA-TTAGAATAAAAAGAATCTA
1 ACC-AGGGTGGTAACCATACGTCAGACTGA-AATAAAAAGAATTTA
* *
1568658 ACTAGGGTGGTAACCATACGTTAGACTGAAATAA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAA
1568692 GAAAAGTTTG
Statistics
Matches: 314, Mismatches: 93, Indels: 46
0.69 0.21 0.10
Matches are distributed among these distances:
42 8 0.03
43 30 0.10
44 232 0.74
45 35 0.11
46 9 0.03
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.22
Consensus pattern (44 bp):
ACCAGGGTGGTAACCATACGTCAGACTGAAATAAAAAGAATTTA
Found at i:1568702 original size:88 final size:89
Alignment explanation
Indices: 1568218--1568705 Score: 322
Period size: 88 Copynumber: 5.6 Consensus size: 89
1568208 GAAGGGTTTG
* * * ** * * * *
1568218 ACCAAGGTGGTAACCATACGTCAAACAGAAAGGAG-AGAGATTTAACTAGGGTGGTAACCATACG
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGATTTGACCAGGGTGGTAACCATACA
* * * *
1568282 TCAAATCAGAATAAGAAGAATGTG
66 TCAAATTAGAATAAAAAGAATTTA
* * * * * * *
1568306 ACCAGGGTGGTAACCATAAGTTAGACTGAAATGAG-ACAGATTTAACCA-AGCGGTAACCATACA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGATTTGACCAGGGTGGTAACCATACA
* *
1568369 TCAAATT-GAAATAAAAAAAAATATA
66 TCAAATTAG-AAT-AAAAAGAATTTA
* * * * * **
1568394 ACTAGGGTTGTAACCATATGTCAGACTGAACTGAGAAAAG-TTTGACCAGGGTGGTAACCATATG
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGATTTGACCAGGGTGGTAACCATACA
* * **
1568458 TTAAA-TAGAACAGAAGTGAATTTA
66 TCAAATTAGAATA-AAAAGAATTTA
* * * * * * * *
1568482 ACGAAGGTGGTAACCATACATCA-AATCAAA-ATGAAAAGAATCTGACCAGGGTGGTAACCATAT
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAG-ATTTGACCAGGGTGGTAACCATAC
* * *
1568545 ATCAGACTAAAATGAGAAAAG--TTTA
65 ATCAAATTAGAAT-A-AAAAGAATTTA
* * * *
1568570 ACCAGGGTGGTAACCATATGTCAAAC--ATAA-AGGAAAGGGATTTGACCTA-GGTGGTAACCAT
1 ACCAGGGTGGTAACCATACGTCAGACTGA-AATAAGAAA-AGATTTGACC-AGGGTGGTAACCAT
* *
1568631 ACATCACATTAGAATAAAAAGAATCTA
63 ACATCAAATTAGAATAAAAAGAATTTA
* *
1568658 ACTAGGGTGGTAACCATACGTTAGACTGAAATAAGAAAAG-TTTGACCA
1 ACCAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGATTTGACCA
1568706 AGGACTAATC
Statistics
Matches: 311, Mismatches: 70, Indels: 39
0.74 0.17 0.09
Matches are distributed among these distances:
86 12 0.04
87 29 0.09
88 230 0.74
89 29 0.09
90 11 0.04
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.22
Consensus pattern (89 bp):
ACCAGGGTGGTAACCATACGTCAGACTGAAATAAGAAAAGATTTGACCAGGGTGGTAACCATACA
TCAAATTAGAATAAAAAGAATTTA
Found at i:1569508 original size:13 final size:13
Alignment explanation
Indices: 1569490--1569515 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1569480 AATTTTTTTG
1569490 TGTATCGATACAT
1 TGTATCGATACAT
1569503 TGTATCGATACAT
1 TGTATCGATACAT
1569516 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1569526 original size:32 final size:34
Alignment explanation
Indices: 1569469--1569533 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
1569459 TACAAGCCAA
*
1569469 TGTATCGATACAATTTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTATTTTGTGTATCGATACAT
1569503 TGTATCGATAC-A-TATTTTGTGTATCGATACA
1 TGTATCGATACAATTATTTTGTGTATCGATACA
1569534 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 18 0.60
33 1 0.03
34 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (34 bp):
TGTATCGATACAATTATTTTGTGTATCGATACAT
Found at i:1570293 original size:23 final size:23
Alignment explanation
Indices: 1570266--1570316 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
1570256 CAAGTAATTC
*
1570266 ATATCAAAAATTTATTTGCACAT
1 ATATCAAAAATTTATTTACACAT
1570289 ATATCAAAAATTTATTTACACAT
1 ATATCAAAAATTTATTTACACAT
1570312 ATATC
1 ATATC
1570317 TATTTTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (23 bp):
ATATCAAAAATTTATTTACACAT
Found at i:1578296 original size:13 final size:13
Alignment explanation
Indices: 1578278--1578303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1578268 AATTTTTTTG
1578278 TGTATCGATACAT
1 TGTATCGATACAT
1578291 TGTATCGATACAT
1 TGTATCGATACAT
1578304 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1595645 original size:20 final size:19
Alignment explanation
Indices: 1595620--1595694 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
1595610 GTTTATCCAG
1595620 TTGTATCGATACATTTTGCA
1 TTGTATCGATACATTTT-CA
*
1595640 TTGTATCGATACATTACTCA
1 TTGTATCGATACATT-TTCA
*
1595660 TTGTATCAATACATTTTACA
1 TTGTATCGATACATTTT-CA
*
1595680 ATGTATCGATACATT
1 TTGTATCGATACATT
1595695 CAAGCATTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.43
Consensus pattern (19 bp):
TTGTATCGATACATTTTCA
Found at i:1598127 original size:51 final size:51
Alignment explanation
Indices: 1598065--1598233 Score: 277
Period size: 51 Copynumber: 3.3 Consensus size: 51
1598055 TATTTTCGAG
1598065 GGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
1598116 GGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
* * * * *
1598167 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAAT-A
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
*
1598217 GGGGTACTCCAACCCCG
1 GGGATACTCCAACCCCG
1598234 TTATTTCCAA
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 16 0.14
51 95 0.86
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
Found at i:1598363 original size:79 final size:78
Alignment explanation
Indices: 1598167--1598471 Score: 283
Period size: 78 Copynumber: 3.9 Consensus size: 78
1598157 TCCACAATCA
* * * *
1598167 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATAG-GGGTACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGAGGATACTCCAACC
* *
1598231 CCGTTATTTCCAAG
66 CCGTT-TTTTCGAG
* * ** * * * *
1598245 GGGATACTTCAACCCCAACCTTA-TTTCTAAATCATCGATTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTTCACAATCGAGGATACTCCAAC
1598309 CCCGTTCTTTTCGAG
65 CCCGTT-TTTTCGAG
* * * * * *
1598324 GGGATAGTCCAACCCCGATTTCATTTTCAAAATACCGATTTTT-ATAATCAAGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGAGGATACTCCAACC
** * *
1598388 CTATTATTTCTGAA
66 CCGTTTTTTC-GAG
*** * * *
1598402 GGGATACTCCAACCCCGATTTTATTTTTGGAACACCAATTTTCCATAATCGAGGATACTCTAACC
1 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGAGGATACTCCAACC
1598467 CCGTT
66 CCGTT
1598472 GTTATCTCCA
Statistics
Matches: 180, Mismatches: 42, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
77 7 0.04
78 95 0.53
79 74 0.41
80 4 0.02
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (78 bp):
GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGAGGATACTCCAACC
CCGTTTTTTCGAG
Found at i:1598458 original size:157 final size:157
Alignment explanation
Indices: 1598167--1598471 Score: 346
Period size: 157 Copynumber: 1.9 Consensus size: 157
1598157 TCCACAATCA
* * * *
1598167 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATAGGGGTACTCCAACCC
1 GGGATACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTTCACAATAAGGATACTCCAACCC
* * * * * *
1598232 CGTTATTTCCAAGGGGATACTTCAACCCCAACCTTATTTCTAAATCATCGATTTTTCACAATCGG
66 CATTATTTCCAAGGGGATACTCCAACCCCAACCTTATTTCTAAATCACCAATTTTCCACAATCGA
1598297 GGATACTCCAACCCCGTTCTTTTCGAG
131 GGATACTCCAACCCCGTTCTTTTCGAG
* * * * *
1598324 GGGATAGTCCAACCCCGATTTCATTTTCAAAATACCGATTTTT-ATAATCAAGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTTCACAAT-AAGGATACTCCAACC
* * * ** * * *
1598388 CTATTATTTCTGAA-GGGATACTCCAACCCCGATTTTATTTTTGGAA-CACCAATTTTCCATAAT
65 CCATTATTTC-CAAGGGGATACTCCAACCCCAACCTTATTTCT-AAATCACCAATTTTCCACAAT
*
1598451 CGAGGATACTCTAACCCCGTT
128 CGAGGATACTCCAACCCCGTT
1598472 GTTATCTCCA
Statistics
Matches: 121, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
156 4 0.03
157 113 0.93
158 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (157 bp):
GGGATACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTTCACAATAAGGATACTCCAACCC
CATTATTTCCAAGGGGATACTCCAACCCCAACCTTATTTCTAAATCACCAATTTTCCACAATCGA
GGATACTCCAACCCCGTTCTTTTCGAG
Found at i:1603327 original size:12 final size:12
Alignment explanation
Indices: 1603282--1603356 Score: 80
Period size: 12 Copynumber: 6.2 Consensus size: 12
1603272 ATGGTTACCT
1603282 TTGTTGTTTTGC
1 TTGTTGTTTTGC
* * **
1603294 -TGCTATTTTAA
1 TTGTTGTTTTGC
1603305 TTGTTGTTTTTGC
1 TTGTTG-TTTTGC
*
1603318 TTGTTGTTTTGG
1 TTGTTGTTTTGC
1603330 TTGTTGTCTTTGC
1 TTGTTGT-TTTGC
1603343 TTGTTGTTTTGC
1 TTGTTGTTTTGC
1603355 TT
1 TT
1603357 CGGTTTCTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
11 7 0.14
12 22 0.44
13 21 0.42
ACGTcount: A:0.04, C:0.08, G:0.23, T:0.65
Consensus pattern (12 bp):
TTGTTGTTTTGC
Found at i:1603333 original size:25 final size:25
Alignment explanation
Indices: 1603305--1603353 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
1603295 GCTATTTTAA
*
1603305 TTGTTGTTTTTGCTTGTTGTTTTGG
1 TTGTTGTCTTTGCTTGTTGTTTTGG
1603330 TTGTTGTCTTTGCTTGTTGTTTTG
1 TTGTTGTCTTTGCTTGTTGTTTTG
1603354 CTTCGGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.00, C:0.06, G:0.27, T:0.67
Consensus pattern (25 bp):
TTGTTGTCTTTGCTTGTTGTTTTGG
Found at i:1603924 original size:13 final size:13
Alignment explanation
Indices: 1603906--1603930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1603896 CATAAAGTGT
1603906 TGTATCGATACAA
1 TGTATCGATACAA
1603919 TGTATCGATACA
1 TGTATCGATACA
1603931 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1603928 original size:33 final size:33
Alignment explanation
Indices: 1603886--1603952 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1603876 ATCAACGATT
1603886 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1603919 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1603952 T
1 T
1603953 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1607256 original size:20 final size:21
Alignment explanation
Indices: 1607222--1607261 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1607212 TCGAATCCTT
*
1607222 TTTTTTCTTTGTTGTTTTTTC
1 TTTTTTCTTTCTTGTTTTTTC
1607243 TTTTTT-TTTCTTGTTTTTT
1 TTTTTTCTTTCTTGTTTTTT
1607262 GCTGCTCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (21 bp):
TTTTTTCTTTCTTGTTTTTTC
Found at i:1608843 original size:42 final size:42
Alignment explanation
Indices: 1608756--1609573 Score: 508
Period size: 42 Copynumber: 19.5 Consensus size: 42
1608746 GTCTCTAGGA
* * * * ** * **
1608756 CAAAACCGTCAGGCAGAATTGAGATAAGGTAGCCTCCAAAAT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
*
1608798 CAAAGCCGACAGGCAAAC-TGAGGATAAGAAAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGAGG-TAAGAAAGTCTCCAAGGT
* * * * **
1608840 CAAAACCAACAAGCAGACTTGAGGTGAGGTAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * * ** * *
1608882 CAACGCTGATAGGCAGACTTGAGGTTAGGTAGTCTCTAGGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
*** *
1608924 CAAAGTTAACAAGCAGAC-TGAGGGTAAGAAAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGA-GGTAAGAAAGTCTCCAAGGT
** * * *
1608966 CAAAGCTAATAGGCAAACTTGAGGTAAGGTAA-TCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAA-GAAAGTCTCCAAGGT
* * * * * ** *
1609008 CAAAGGCGACAAGTAGACTTGAGATTAGGCAGTCTCCAGGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * * * **
1609050 CAAAACTGACAGGTAGACTTAAGGTGAGGTAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * * ***
1609092 CAAAGCCGATAGGTAGAC-TAAGAGTAATAAAGTCT-TGGGGT
1 CAAAGCCGACAGGCAGACTTGAG-GTAAGAAAGTCTCCAAGGT
* * ** *
1609133 CAAAGCCGACAGGCAGACTTTAGGTGAGGCAGTCTTCAAGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * *
1609175 CAAAGTCGACAGGCA-AC-TAAGGGTAACAAAGTCTCCAGGGT
1 CAAAGCCGACAGGCAGACTTGA-GGTAAGAAAGTCTCCAAGGT
** * * *
1609216 CAAAGCCGACAGGCAGACTTGAGGTAAGGCAGTTTCTAGGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * * * * *
1609258 CAAAGTCGACAAGTAGACTTGAGGTGAGGCAA-TCTCTAGGGT
1 CAAAGCCGACAGGCAGACTTGAGGT-AAGAAAGTCTCCAAGGT
** *
1609300 CAAAATCGACACGCAGAC-TGAGGGTAAGAAAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGA-GGTAAGAAAGTCTCCAAGGT
* * * * * *
1609342 TAAAGCCGACAGGTAAACTTGAGGTGAGACAGTCTCCAGGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* *
1609384 CAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGT-TTCAAGGT
1 CAAAGCCGACAGGCAGACTTG-AGGTAAGAAAGTCTCCAAGGT
* * * ** *
1609425 CAAAGCCGACAGGAAAACTTGAGGTGAGGCAGTCTCTAAGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * * * **
1609467 CAACGGCAACAGGCAAACTTGAGGTTAGGCAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
* * * *
1609509 CAAAGTCAACAGGCA-AATTGAGGGTAAAAAAGTCTCCAAGGT
1 CAAAGCCGACAGGCAGACTTGA-GGTAAGAAAGTCTCCAAGGT
* * *
1609551 CAAAGTCGATAGACAGACTTGAG
1 CAAAGCCGACAGGCAGACTTGAG
1609574 TCGATACGCA
Statistics
Matches: 602, Mismatches: 153, Indels: 42
0.76 0.19 0.05
Matches are distributed among these distances:
40 2 0.00
41 114 0.19
42 462 0.77
43 24 0.04
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (42 bp):
CAAAGCCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGT
Found at i:1608944 original size:126 final size:126
Alignment explanation
Indices: 1608804--1609513 Score: 576
Period size: 126 Copynumber: 5.7 Consensus size: 126
1608794 AAATCAAAGC
* * * * * *
1608804 CGACAGGCAAACTGAGGATAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTTGAGGTGAGG
1 CGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTAAGG
* * * * * * *
1608869 TAGTCTCCAAGGTCAACGCTGATAGGCAGACTTGAGGTTAGGTAGTCTCTAGGGTCAAAGT
66 CAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTCAAAAT
** * ** * *
1608930 TAACAAGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCTAATAGGCAAACTTGAGGTAAGG
1 CGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTAAGG
* * * * * * * *
1608995 TAATCTCCAAGGTCAAAGGC-GACAAGTAGACTTGAGATTAGGCAGTCTCCAGGGTCAAAA-
66 CAGTCTCCAGGGTCAAA-GCTGACAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTCAAAAT
* * * * ** * * *
1609055 CTGACAGGTAGACTTAAGGTGAGGTAGTCTCCAAGGTCAAAGCCGATAGGTAGAC-TAAGAGTAA
1 C-GACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAG-GTAA
*** ** * * * *
1609119 TAAAGTCT-TGGGGTCAAAGCCGACAGGCAGACTTTAGGTGAGGCAGTCT-TCAAGGTCAAAGT
64 GGCAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTGAGGTGAGGCAGTCTCT-AGGGTCAAAAT
* * *
1609181 CGACAGGCA-ACTAAGGGTAACAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTGAGGTAAGG
1 CGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTAAGG
* * * * *
1609245 CAGTTTCTAGGGTCAAAG-TCGACAAGTAGACTTGAGGTGAGGCAATCTCTAGGGTCAAAAT
66 CAGTCTCCAGGGTCAAAGCT-GACAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTCAAAAT
* * * * * *
1609306 CGACACGCAGACTGAGGGTAAGAAAGTCTCCAAGGTTAAAGCCGACAGGTAAACTTGAGGTGAGA
1 CGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTAAGG
* ** * * **
1609371 CAGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGTTTC-AAGGTCAAAGC
66 CAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTG-AGGTGAGGCAGTCTCTAGGGTCAAAAT
* * * ** * * * * * *
1609431 CGACAGGAAAACTTGA-GGTGAGGCAGTCTCTAAGGTCAACGGCAACAGGCAAACTTGAGGTTAG
1 CGACAGGCAGAC-TGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTAAG
*
1609495 GCAGTCTCCAAGGTCAAAG
65 GCAGTCTCCAGGGTCAAAG
1609514 TCAACAGGCA
Statistics
Matches: 462, Mismatches: 108, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
124 45 0.10
125 176 0.38
126 238 0.52
127 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (126 bp):
CGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTAAGG
CAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTCAAAAT
Found at i:1609447 original size:209 final size:209
Alignment explanation
Indices: 1609130--1609573 Score: 525
Period size: 209 Copynumber: 2.1 Consensus size: 209
1609120 AAAGTCTTGG
* * * *
1609130 GGTCAAAGCCGACAGGCAGACTTTAGGTGAGGCAGTCTTCAAGGTCAAAGTCGACAGGCAACTAA
1 GGTCAAAGCCGACAGGCAAACTTGAGGTGAGACAGTCTCCAAGGTCAAAGTCGACAGGCAACTAA
* * * * *
1609195 GGGTAACAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTGAGGTAAGGCAGTTTCTAGGGTCA
66 GGGTAACAAAGTCTCCAAGGTCAAAGCCGACAGGAAAACTTGAGGTAAGGCAGTCTCTAAGGTCA
* * * * * * * *
1609260 AAGTCGACAAGTAGACTTGAGGTGAGGCAATCTCTAGGGTCAAAATCGACACGCAGACTGAGGGT
131 AAGGCAACAAGCAAACTTGAGGTGAGGCAATCTCCAAGGTCAAAATCAACACGCAAACTGAGGGT
*
1609325 AAGAAAGTCTCCAA
196 AAAAAAGTCTCCAA
* * *
1609339 GGTTAAAGCCGACAGGTAAACTTGAGGTGAGACAGTCTCCAGGGTCAAAG-CTGACAGGCAGACT
1 GGTCAAAGCCGACAGGCAAACTTGAGGTGAGACAGTCTCCAAGGTCAAAGTC-GACAGGCA-ACT
* * *
1609403 GAA-GGTAAGAAAGT-TTCAAGGTCAAAGCCGACAGGAAAACTTGAGGTGAGGCAGTCTCTAAGG
64 -AAGGGTAACAAAGTCTCCAAGGTCAAAGCCGACAGGAAAACTTGAGGTAAGGCAGTCTCTAAGG
* * * * * * *
1609466 TCAACGGCAACAGGCAAACTTGAGGTTAGGCAGTCTCCAAGGTCAAAGTCAACAGGCAAATTGAG
128 TCAAAGGCAACAAGCAAACTTGAGGTGAGGCAATCTCCAAGGTCAAAATCAACACGCAAACTGAG
1609531 GGTAAAAAAGTCTCCAA
193 GGTAAAAAAGTCTCCAA
* * * *
1609548 GGTCAAAGTCGATAGACAGACTTGAG
1 GGTCAAAGCCGACAGGCAAACTTGAG
1609574 TCGATACGCA
Statistics
Matches: 195, Mismatches: 37, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
208 1 0.01
209 179 0.92
210 13 0.07
211 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (209 bp):
GGTCAAAGCCGACAGGCAAACTTGAGGTGAGACAGTCTCCAAGGTCAAAGTCGACAGGCAACTAA
GGGTAACAAAGTCTCCAAGGTCAAAGCCGACAGGAAAACTTGAGGTAAGGCAGTCTCTAAGGTCA
AAGGCAACAAGCAAACTTGAGGTGAGGCAATCTCCAAGGTCAAAATCAACACGCAAACTGAGGGT
AAAAAAGTCTCCAA
Found at i:1609577 original size:18 final size:18
Alignment explanation
Indices: 1609554--1609588 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1609544 CCAAGGTCAA
1609554 AGTCGATA-GACAGACTTG
1 AGTCGATACG-CAGACTTG
1609572 AGTCGATACGCAGACTT
1 AGTCGATACGCAGACTT
1609589 AAGGTGAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (18 bp):
AGTCGATACGCAGACTTG
Found at i:1609673 original size:102 final size:102
Alignment explanation
Indices: 1609483--1609675 Score: 235
Period size: 102 Copynumber: 1.9 Consensus size: 102
1609473 CAACAGGCAA
* * * *
1609483 ACTTGAGGTTAGGCAGTCTCCAAGGTCAAAGTCAACAGGCAAATTGAGGGTAAAAAAGTCTCCAA
1 ACTTAAGGTGAGGCAGTCTCCAAGGTCAAAGGCAACAGGCAAATTGAGGATAAAAAAGTCTCCAA
* *
1609548 GGTCAAAGTCGATAGACAGACTTGAGTCGATACGCAG
66 GGTCAAAGCCGACAGACAGACTTGAGTCGATACGCAG
* * *** *
1609585 ACTTAAGGTGAGGTAGTCTCCAAGGTCAAAGGCAACAGGCAAACTTGA-GATTAGGTAGTCTCTA
1 ACTTAAGGTGAGGCAGTCTCCAAGGTCAAAGGCAACAGGCAAA-TTGAGGATAAAAAAGTCTCCA
* * *
1609649 GGGTCAAAGCCGACGGGCAGACTTGAG
65 AGGTCAAAGCCGACAGACAGACTTGAG
1609676 GTGAGGTAGT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
102 71 0.95
103 4 0.05
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (102 bp):
ACTTAAGGTGAGGCAGTCTCCAAGGTCAAAGGCAACAGGCAAATTGAGGATAAAAAAGTCTCCAA
GGTCAAAGCCGACAGACAGACTTGAGTCGATACGCAG
Found at i:1609702 original size:42 final size:42
Alignment explanation
Indices: 1609581--1610330 Score: 344
Period size: 42 Copynumber: 17.9 Consensus size: 42
1609571 GAGTCGATAC
* * *
1609581 GCAGACTTAAGGTGAGGTAGTCTCCAAGGTCAAAGGCAACAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* * * * * *
1609623 GCAAACTTGAGATTAGGTAGTCTCTAGGGTCAAAGCCGACGG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* *
1609665 GCAGACTTGAGGTGAGGTAGTTTCCAAGGTCAAAGCCGATAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* ** * * *** * *
1609707 GCAGAC-TGAGGGTAAGAAAGCCTTCAAGGTCAAAATGGATAA
1 GCAGACTTGA-GGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* * * * *
1609749 GTAGACTTGAGGTGTGGCAGTCTCCAAGGTCAAAGCTGACAA
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* * * * *
1609791 GCAGAC-TAAGG-GTAGGAAAG-C-CCTTAGGGTCAAAGCTGACAA
1 GCAGACTTGAGGTG-AGG-TAGTCTCC--AAGGTCAAAGCCGACAG
* * * * *
1609833 GTAGACTTGAGGTGAGGCAGTCTGC-AGAGTCAAAGTCGATAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAG-GTCAAAGCCGACAG
*
1609875 GCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGACAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* ** * * * * *
1609917 GCAAAC-TGAGG-GCAAGAAAGTCTCTAGGGTCAAAGTCAATAG
1 GCAGACTTGAGGTG--AGGTAGTCTCCAAGGTCAAAGCCGACAG
** ** * * * *
1609959 GCAGAC-TGAGGACAAGAAAGTCTCTAGGGTCAAGGTCGACAG
1 GCAGACTTGAGG-TGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* *** * * * *
1610001 GTAGAC-TGAGG-GCAAAAAAGTCTCTAGGGTCAAGGTCGACAG
1 GCAGACTTGAGGTG--AGGTAGTCTCCAAGGTCAAAGCCGACAG
* * * * *
1610043 GCAGACTTAAGGTAAGGCAGTCTCCAAGGTCAAAGCCAATAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* ** * * *
1610085 GCAGAC-TGAAGGTAAGAAAGTCT-CTAGTGTCAAAGCTGATAG
1 GCAGACTTG-AGGTGAGGTAGTCTCCAAG-GTCAAAGCCGACAG
* * * * *
1610127 GTAGAGTTGAGGTGAGGCAATCTCC-AGAGTCAAAGTCGACAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAG-GTCAAAGCCGACAG
* *** ** * *
1610169 GCAGAC-TGAGGGTAAAAAAGTCTCCAAAATCAAAGTCGATAG
1 GCAGACTTGA-GGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* * * *
1610211 GCAAACTTGAGGTGAGGCAGTCTCCAGGGTCAAAGCCGATAG
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* * * *** * *
1610253 GCAAAC-TAAGGGTAAAAAAATCTCCAGGGTCAAAGCCGACAG
1 GCAGACTTGA-GGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
* * *
1610295 GTAGACTTGAGGTGAGGCAGTCTCTAAGGTCAAAGC
1 GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGC
1610331 TTAAAGTAGA
Statistics
Matches: 543, Mismatches: 136, Indels: 58
0.74 0.18 0.08
Matches are distributed among these distances:
40 4 0.01
41 25 0.05
42 486 0.90
43 26 0.05
44 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (42 bp):
GCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAG
Found at i:1609706 original size:144 final size:144
Alignment explanation
Indices: 1609441--1609713 Score: 359
Period size: 144 Copynumber: 1.9 Consensus size: 144
1609431 CGACAGGAAA
* * * *
1609441 ACTTGAGGTGAGGCAGTCTCTAAGGTCAACGGCAACAGGCAAACTTGAGGTTAGGCAGTCTCCAA
1 ACTTAAGGTGAGGCAGTCTCCAAGGTCAAAGGCAACAGGCAAACTTGAGATTAGGCAGTCTCCAA
* *
1609506 GGTCAAAGTCAACAGGCAAATTGAGGGTAAAAAAGTCTCCAAGGTCAAAGTCGATAGACAGACTT
66 GGTCAAAGCCAACAGGCAAATTGAGGGTAAAAAAGTCTCCAAGGTCAAAGCCGATAGACAGACTT
1609571 GAGTCGATACGCAG
131 GAGTCGATACGCAG
* * * *
1609585 ACTTAAGGTGAGGTAGTCTCCAAGGTCAAAGGCAACAGGCAAACTTGAGATTAGGTAGTCTCTAG
1 ACTTAAGGTGAGGCAGTCTCCAAGGTCAAAGGCAACAGGCAAACTTGAGATTAGGCAGTCTCCAA
* * * * *** * *
1609650 GGTCAAAGCCGACGGGCAGACTTGA-GGTGAGGTAGTTTCCAAGGTCAAAGCCGATAGGCAGACT
66 GGTCAAAGCCAACAGGCA-AATTGAGGGTAAAAAAGTCTCCAAGGTCAAAGCCGATAGACAGACT
1609714 GAGGGTAAGA
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
144 104 0.95
145 5 0.05
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.19
Consensus pattern (144 bp):
ACTTAAGGTGAGGCAGTCTCCAAGGTCAAAGGCAACAGGCAAACTTGAGATTAGGCAGTCTCCAA
GGTCAAAGCCAACAGGCAAATTGAGGGTAAAAAAGTCTCCAAGGTCAAAGCCGATAGACAGACTT
GAGTCGATACGCAG
Found at i:1609981 original size:84 final size:84
Alignment explanation
Indices: 1609861--1610330 Score: 496
Period size: 84 Copynumber: 5.6 Consensus size: 84
1609851 AGTCTGCAGA
* *
1609861 GTCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAAACTGA
1 GTCAAAGTCGATAGGCAGACTTGAGGTAAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGA
* *
1609926 GGGCAAGAAAGTCTCTAGG
66 GGGTAAAAAAGTCTCTAGG
* * ** * * * * *
1609945 GTCAAAGTCAATAGGCAGAC-TGAGGACAAGAAAGTCTCTAGGGTCAAGGTCGACAGGTAGACTG
1 GTCAAAGTCGATAGGCAGACTTGAGG-TAAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTG
*
1610009 AGGGCAAAAAAGTCTCTAGG
65 AGGGTAAAAAAGTCTCTAGG
* * * * *
1610029 GTCAAGGTCGACAGGCAGACTTAAGGTAAGGCAGTCTCCAAGGTCAAAGCCAATAGGCAGACTGA
1 GTCAAAGTCGATAGGCAGACTTGAGGTAAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGA
* * *
1610094 AGGTAAGAAAGTCTCTAGT
66 GGGTAAAAAAGTCTCTAGG
* * * * *
1610113 GTCAAAG-CTGATAGGTAGAGTTGAGGTGAGGCAATCTCC-AGAGTCAAAGTCGACAGGCAGACT
1 GTCAAAGTC-GATAGGCAGACTTGAGGTAAGGCAGTCTCCAAG-GTCAAAGCCGACAGGCAGACT
* **
1610176 GAGGGTAAAAAAGTCTCCAAA
64 GAGGGTAAAAAAGTCTCTAGG
* * * * * * *
1610197 ATCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTCTCCAGGGTCAAAGCCGATAGGCAAACTAA
1 GTCAAAGTCGATAGGCAGACTTGAGGTAAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGA
* *
1610262 GGGTAAAAAAATCTCCAGG
66 GGGTAAAAAAGTCTCTAGG
* * * * *
1610281 GTCAAAGCCGACAGGTAGACTTGAGGTGAGGCAGTCTCTAAGGTCAAAGC
1 GTCAAAGTCGATAGGCAGACTTGAGGTAAGGCAGTCTCCAAGGTCAAAGC
1610331 TTAAAGTAGA
Statistics
Matches: 315, Mismatches: 65, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
83 8 0.03
84 301 0.96
85 6 0.02
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.17
Consensus pattern (84 bp):
GTCAAAGTCGATAGGCAGACTTGAGGTAAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGA
GGGTAAAAAAGTCTCTAGG
Found at i:1610193 original size:126 final size:126
Alignment explanation
Indices: 1609650--1610253 Score: 453
Period size: 126 Copynumber: 4.8 Consensus size: 126
1609640 TAGTCTCTAG
* * * ** *
1609650 GGTCAAAGCCGACGGGCAGACTTGA-GGTGAGGTAGTTTCCAAGGTCAAAGCCGATAGGCAGACT
1 GGTCAAAGTCGACAGGCAGAC-TGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACT
* * * * * * *
1609714 GAGGGTAAGAAAGCCT-TCAAGGTCAAA-ATGGATAAGTAGACTTGAGGTGTGGCAGTCTCCAA
65 GA-GGTAAGAAAGTCTCT-AGGGTCAAAGCTCGATAGGTAGACTTGAGGTGAGGCAATCTCCAA
* * * * * * * *
1609776 GGTCAAAG-CTGACAAGCAGACTAAGGGTAGGAAAG-C-CCTTAGGGTCAAAGCTGACAAGTAGA
1 GGTCAAAGTC-GACAGGCAGACTGAGGGTAAGAAAGTCTCC--AAGGTCAAAGCCGATAGGCAGA
* ** * * *
1609838 CTTGAGGTGAGGCAGTCTGC-AGAGTCAAAG-TCGATAGGCAGACTTGAGGTGAGGCAGTCTCCA
63 C-TGAGGTAAGAAAGTCT-CTAGGGTCAAAGCTCGATAGGTAGACTTGAGGTGAGGCAATCTCCA
1609901 A
126 A
* * * * * * *
1609902 GGTCAAAGCCGACAGGCAAACTGAGGGCAAGAAAGTCTCTAGGGTCAAAGTCAATAGGCAGACTG
1 GGTCAAAGTCGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTG
* * * *** * *
1609967 AGGACAAGAAAGTCTCTAGGGTC-AAGGTCGACAGGTAGAC-TGAGG-GCAAAAAAGTCTCTAG
66 AGG-TAAGAAAGTCTCTAGGGTCAAAGCTCGATAGGTAGACTTGAGGTG-AGGCAA-TCTCCAA
* * * ** *
1610028 GGTCAAGGTCGACAGGCAGACTTAAGGTAAGGCAGTCTCCAAGGTCAAAGCCAATAGGCAGACTG
1 GGTCAAAGTCGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTG
* *
1610093 AAGGTAAGAAAGTCTCTAGTGTCAAAGCT-GATAGGTAGAGTTGAGGTGAGGCAATCTCC-A
66 -AGGTAAGAAAGTCTCTAGGGTCAAAGCTCGATAGGTAGACTTGAGGTGAGGCAATCTCCAA
* ** * *
1610153 GAGTCAAAGTCGACAGGCAGACTGAGGGTAAAAAAGTCTCCAAAATCAAAGTCGATAGGCAAACT
1 G-GTCAAAGTCGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGAC-
* ** *
1610218 TGAGGTGAGGCAGTCTCCAGGGTCAAAGC-CGATAGG
64 TGAGGTAAGAAAGTCTCTAGGGTCAAAGCTCGATAGG
1610254 CAAACTAAGG
Statistics
Matches: 370, Mismatches: 85, Indels: 46
0.74 0.17 0.09
Matches are distributed among these distances:
124 3 0.01
125 20 0.05
126 323 0.87
127 22 0.06
128 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.17
Consensus pattern (126 bp):
GGTCAAAGTCGACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTG
AGGTAAGAAAGTCTCTAGGGTCAAAGCTCGATAGGTAGACTTGAGGTGAGGCAATCTCCAA
Found at i:1610329 original size:168 final size:168
Alignment explanation
Indices: 1609862--1610329 Score: 573
Period size: 168 Copynumber: 2.8 Consensus size: 168
1609852 GTCTGCAGAG
* *
1609862 TCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAAACTGAG
1 TCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAAACTAAG
* * * * ** ** *
1609927 GGCAAGAAAGTCTCTAGGGTCAAAGTCAATAGGCAGAC-TGAGGACAAGAAAGTCTCTAGGGTCA
66 GGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGTAGACTTGAGG-TGAGGCAGTCTCTAAGGTCA
* * * ***
1609991 AGGTCGACAGGTAGACTGAGGGCAAAAAAGTCTCTAGGG
130 AAGTCGACAGGCAGACTGAGGGCAAAAAAGTCTCCAAAA
* * * * * *
1610030 TCAAGGTCGACAGGCAGACTTAAGGTAAGGCAGTCTCCAAGGTCAAAGCCAATAGGCAGACTGAA
1 TCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAAACT-AA
* * * * *
1610095 -GGTAAGAAAGTCTCTAGTGTCAAAGCTGATAGGTAGAGTTGAGGTGAGGCAATCTC-CAGAGTC
65 GGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGTAGACTTGAGGTGAGGCAGTCTCTAAG-GTC
*
1610158 AAAGTCGACAGGCAGACTGAGGGTAAAAAAGTCTCCAAAA
129 AAAGTCGACAGGCAGACTGAGGGCAAAAAAGTCTCCAAAA
* *
1610198 TCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTCTCCAGGGTCAAAGCCGATAGGCAAACTAAG
1 TCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAAACTAAG
* * * *
1610263 GGTAAAAAAATCTCCAGGGTCAAAGCCGACAGGTAGACTTGAGGTGAGGCAGTCTCTAAGGTCAA
66 GGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGTAGACTTGAGGTGAGGCAGTCTCTAAGGTCAA
1610328 AG
131 AG
1610330 CTTAAAGTAG
Statistics
Matches: 249, Mismatches: 46, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
167 3 0.01
168 238 0.96
169 8 0.03
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.17
Consensus pattern (168 bp):
TCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAAACTAAG
GGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGTAGACTTGAGGTGAGGCAGTCTCTAAGGTCAA
AGTCGACAGGCAGACTGAGGGCAAAAAAGTCTCCAAAA
Found at i:1610548 original size:44 final size:44
Alignment explanation
Indices: 1610458--1610609 Score: 177
Period size: 44 Copynumber: 3.5 Consensus size: 44
1610448 GAATGATTTA
* * *
1610458 ACTAGAGTGGTAACCATA-GTCAAA-CAGAAA-G-GAAAAGGGTTTG
1 ACTAGGGTGGTAACCATATGTCAAATCA-AAATGAGAAAA--ATCTG
* *
1610501 ACTAAGGTGGTAACCATATGTCAAATCAAAATGAGATAAATCTG
1 ACTAGGGTGGTAACCATATGTCAAATCAAAATGAGAAAAATCTG
* * *
1610545 ACTAGGGTAGTAACCATACGTCAAATCAGAATGAGAAAAATCTG
1 ACTAGGGTGGTAACCATATGTCAAATCAAAATGAGAAAAATCTG
1610589 ACTAGGGTGGTAACCATATGT
1 ACTAGGGTGGTAACCATATGT
1610610 TAGGCTGAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
43 16 0.17
44 70 0.75
45 3 0.03
46 4 0.04
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (44 bp):
ACTAGGGTGGTAACCATATGTCAAATCAAAATGAGAAAAATCTG
Found at i:1612060 original size:15 final size:16
Alignment explanation
Indices: 1612038--1612082 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
1612028 TTTCATTTGA
1612038 TTTCTTTTTCTTTTTC
1 TTTCTTTTTCTTTTTC
1612054 TTT-TTTTTCTTTTT-
1 TTTCTTTTTCTTTTTC
* *
1612068 TTTCATTTTATTTTT
1 TTTCTTTTTCTTTTT
1612083 ATAGTTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 3 0.12
15 20 0.77
16 3 0.12
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTCTTTTTCTTTTTC
Found at i:1612076 original size:10 final size:9
Alignment explanation
Indices: 1612048--1612081 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
1612038 TTTCTTTTTC
1612048 TTTTTCTTT
1 TTTTTCTTT
1612057 TTTTTCTTT
1 TTTTTCTTT
1612066 TTTTTCATTT
1 TTTTTC-TTT
1612076 TATTTT
1 T-TTTT
1612082 TATAGTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.65
10 4 0.17
11 4 0.17
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:1624310 original size:12 final size:12
Alignment explanation
Indices: 1624295--1624339 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
1624285 TGGGTTGCTA
1624295 TTTTGCTTGTTG
1 TTTTGCTTGTTG
* *
1624307 TTTTGGTTGCTG
1 TTTTGCTTGTTG
*
1624319 TCTGTGCTTGTTG
1 T-TTTGCTTGTTG
1624332 TTTTGCTT
1 TTTTGCTT
1624340 CGGTTGCTGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.00, C:0.11, G:0.27, T:0.62
Consensus pattern (12 bp):
TTTTGCTTGTTG
Found at i:1625264 original size:12 final size:12
Alignment explanation
Indices: 1625248--1625281 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1625238 TTCCATATTA
*
1625248 ATGCATGAAAGT
1 ATGCATGAAAGC
*
1625260 GTGCATGAAAGC
1 ATGCATGAAAGC
1625272 ATGCATGAAA
1 ATGCATGAAA
1625282 TACATGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.21
Consensus pattern (12 bp):
ATGCATGAAAGC
Found at i:1625335 original size:13 final size:14
Alignment explanation
Indices: 1625319--1625359 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
1625309 CGTTCATGTG
1625319 TGAAATGC-ATGCA
1 TGAAATGCAATGCA
*
1625332 TGAAA-ACAATGCAA
1 TGAAATGCAATGC-A
1625346 TGAAATGCAATGCA
1 TGAAATGCAATGCA
1625360 ATGTTTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
12 1 0.04
13 9 0.39
14 7 0.30
15 6 0.26
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (14 bp):
TGAAATGCAATGCA
Found at i:1625358 original size:15 final size:15
Alignment explanation
Indices: 1625319--1625362 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
1625309 CGTTCATGTG
1625319 TGAAATGC-ATGC-A
1 TGAAATGCAATGCAA
*
1625332 TGAAA-ACAATGCAA
1 TGAAATGCAATGCAA
1625346 TGAAATGCAATGCAA
1 TGAAATGCAATGCAA
1625361 TG
1 TG
1625363 TTTTTGTCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 9 0.35
14 6 0.23
15 10 0.38
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (15 bp):
TGAAATGCAATGCAA
Found at i:1625607 original size:16 final size:17
Alignment explanation
Indices: 1625583--1625622 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
1625573 ATTAATTAAT
*
1625583 TATTGTTATTATT-TTA
1 TATTTTTATTATTATTA
*
1625599 TATTTTTATTATTATTT
1 TATTTTTATTATTATTA
1625616 TATTTTT
1 TATTTTT
1625623 TATTTTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (17 bp):
TATTTTTATTATTATTA
Found at i:1625612 original size:19 final size:18
Alignment explanation
Indices: 1625588--1625626 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
1625578 TTAATTATTG
1625588 TTATTATTTTATATTTTTA
1 TTATTATTTTAT-TTTTTA
1625607 TTATTATTTTATTTTTTA
1 TTATTATTTTATTTTTTA
1625625 TT
1 TT
1625627 TTTTGTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
TTATTATTTTATTTTTTA
Found at i:1625630 original size:25 final size:27
Alignment explanation
Indices: 1625581--1625640 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 27
1625571 TAATTAATTA
1625581 ATTATTGTTATTATTTTATATTTTTATT
1 ATTATT-TTATTATTTTATATTTTTATT
*
1625609 ATTATTTTATT-TTTTAT-TTTTTGTT
1 ATTATTTTATTATTTTATATTTTTATT
*
1625634 GTTATTT
1 ATTATTT
1625641 ATTGTATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 13 0.43
26 6 0.20
27 5 0.17
28 6 0.20
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (27 bp):
ATTATTTTATTATTTTATATTTTTATT
Found at i:1625641 original size:24 final size:23
Alignment explanation
Indices: 1625582--1625643 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
1625572 AATTAATTAA
1625582 TTATTGTTA-TTATTTTATATTT
1 TTATTGTTATTTATTTTATATTT
* *
1625604 TTATTATTATTTTATTTTTTATTTT
1 TTATTGTTA-TTTATTTTATA-TTT
*
1625629 TTGTTGTTATTTATT
1 TTATTGTTATTTATT
1625644 GTATTATTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 8 0.24
24 15 0.45
25 10 0.30
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (23 bp):
TTATTGTTATTTATTTTATATTT
Found at i:1625650 original size:25 final size:24
Alignment explanation
Indices: 1625582--1625651 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
1625572 AATTAATTAA
1625582 TTATTGTTA-TTA-TT-TTATATTT
1 TTATTGTTATTTATTTATTAT-TTT
* *
1625604 TTATTATTATTTTATTTTTTATTTT
1 TTATTGTTA-TTTATTTATTATTTT
*
1625629 TTGTTGTTATTTATTGTATTATT
1 TTATTGTTATTTATT-TATTATT
1625652 CATGTTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 8 0.21
24 9 0.23
25 18 0.46
26 4 0.10
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (24 bp):
TTATTGTTATTTATTTATTATTTT
Found at i:1627980 original size:31 final size:31
Alignment explanation
Indices: 1627935--1628000 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
1627925 TTTGACTAAT
*
1627935 TTTGCAACTAAACTTTGATTTTTTGTTGAAC
1 TTTGCAACTAAACTTTGATTTTTTATTGAAC
* * *
1627966 TTTGCTACTCAACTTTGATTTTTTATTGAAT
1 TTTGCAACTAAACTTTGATTTTTTATTGAAC
1627997 TTTG
1 TTTG
1628001 TCACTTAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.53
Consensus pattern (31 bp):
TTTGCAACTAAACTTTGATTTTTTATTGAAC
Found at i:1628017 original size:31 final size:31
Alignment explanation
Indices: 1627951--1628018 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
1627941 ACTAAACTTT
* * *
1627951 GATTTTTTGTTGAACTTTGCTACTCAACTTT
1 GATTTTTTATTGAACTTTGCTACTCAACATA
* *
1627982 GATTTTTTATTGAATTTTG-TCACTTAACATA
1 GATTTTTTATTGAACTTTGCT-ACTCAACATA
1628013 GATTTT
1 GATTTT
1628019 AAATGATTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (31 bp):
GATTTTTTATTGAACTTTGCTACTCAACATA
Found at i:1632700 original size:21 final size:21
Alignment explanation
Indices: 1632674--1632715 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1632664 AATTATATAA
1632674 ATATTAGGAGGGTGGGGTTGG
1 ATATTAGGAGGGTGGGGTTGG
1632695 ATATTAGGAGGGTGGGGTTGG
1 ATATTAGGAGGGTGGGGTTGG
1632716 GGTACTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.52, T:0.29
Consensus pattern (21 bp):
ATATTAGGAGGGTGGGGTTGG
Found at i:1633743 original size:15 final size:15
Alignment explanation
Indices: 1633713--1633742 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1633703 TTTCCTCTAA
1633713 TCCTTTCTTTTCTTT
1 TCCTTTCTTTTCTTT
1633728 TCCTTTC-TTTCTTT
1 TCCTTTCTTTTCTTT
1633742 T
1 T
1633743 TGATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
TCCTTTCTTTTCTTT
Found at i:1636408 original size:22 final size:23
Alignment explanation
Indices: 1636358--1636409 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
1636348 TTATTTATAT
1636358 TTTTAAACTTAATAAAAAAAAAA
1 TTTTAAACTTAATAAAAAAAAAA
* * **
1636381 TATTAAA-TTAATAAAGATTAAA
1 TTTTAAACTTAATAAAAAAAAAA
1636403 TTTTAAA
1 TTTTAAA
1636410 AATATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
TTTTAAACTTAATAAAAAAAAAA
Found at i:1637827 original size:2 final size:2
Alignment explanation
Indices: 1637820--1637844 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1637810 TTATTTATGG
1637820 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1637845 CGTTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1638588 original size:28 final size:28
Alignment explanation
Indices: 1638548--1638605 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
1638538 AATTTCTACT
1638548 ATTATGATTGAT-AAGACTACTAGAATAA
1 ATTATGATTGATAAAG-CTACTAGAATAA
1638576 ATTATGATTGATAAAGCTACTAGAATAA
1 ATTATGATTGATAAAGCTACTAGAATAA
1638604 AT
1 AT
1638606 GTTATCAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 26 0.90
29 3 0.10
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.33
Consensus pattern (28 bp):
ATTATGATTGATAAAGCTACTAGAATAA
Found at i:1640842 original size:95 final size:96
Alignment explanation
Indices: 1640655--1640842 Score: 274
Period size: 95 Copynumber: 2.0 Consensus size: 96
1640645 TATCGCTGAC
* *
1640655 GATGATAATTTAGGCAAAAATAAAATTTAAATCTTGACAAGTTTAAAAATGGAGTTGGAGTATCC
1 GATGACAATTTAAGCAAAAATAAAATTTAAATCTTGACAAGTTTAAAAATGGAGTTGGAGTATCC
* * * *
1640720 CCTTGGAAGAATATGGTTGTAGTATCCCGAT
66 CCTCGGAAGAATAGGGTCGGAGTATCCCGAT
*
1640751 GATGACAATTTAAGCAAAAATAAAATTTAAATCTTTACAAG-TTAAAAATGG-GATTGGAGTATC
1 GATGACAATTTAAGCAAAAATAAAATTTAAATCTTGACAAGTTTAAAAATGGAG-TTGGAGTATC
1640814 CCCTCGGAAGAAT-GGAGTCGGAGTATCCC
65 CCCTCGGAAGAATAGG-GTCGGAGTATCCC
1640843 CGTGAAAGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
94 2 0.02
95 43 0.52
96 38 0.46
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (96 bp):
GATGACAATTTAAGCAAAAATAAAATTTAAATCTTGACAAGTTTAAAAATGGAGTTGGAGTATCC
CCTCGGAAGAATAGGGTCGGAGTATCCCGAT
Found at i:1644104 original size:16 final size:16
Alignment explanation
Indices: 1644085--1644125 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
1644075 TGATATTATA
1644085 ATTATTATTTTATAAT
1 ATTATTATTTTATAAT
1644101 ATTAATT-TTTTATAAT
1 ATT-ATTATTTTATAAT
1644117 ATTTATTAT
1 A-TTATTAT
1644126 GATTGAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTATTATTTTATAAT
Found at i:1647002 original size:21 final size:23
Alignment explanation
Indices: 1646972--1647029 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 23
1646962 ACACATTATT
* *
1646972 TAATTGATTT-TTTTATA-AAAA
1 TAATTAATTTATTTTAAATAAAA
1646993 TAATTAATTTATTTTAAATAAAA
1 TAATTAATTTATTTTAAATAAAA
1647016 TATATTATATTTAT
1 TA-ATTA-ATTTAT
1647030 CTCAAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 9 0.29
22 6 0.19
23 6 0.19
24 4 0.13
25 6 0.19
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TAATTAATTTATTTTAAATAAAA
Found at i:1647036 original size:25 final size:23
Alignment explanation
Indices: 1646989--1647036 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
1646979 TTTTTTTATA
* *
1646989 AAAATAATTAATTTATTTTAAAT
1 AAAATAATTAATTTATCTCAAAT
1647012 AAAATATATTATATTTATCTCAAAT
1 AAAATA-ATTA-ATTTATCTCAAAT
1647037 TTAATATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 6 0.29
24 4 0.19
25 11 0.52
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAATAATTAATTTATCTCAAAT
Found at i:1647692 original size:16 final size:16
Alignment explanation
Indices: 1647668--1647698 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1647658 TGAGTGGGGA
*
1647668 AAATCTAAATTTTCCC
1 AAATATAAATTTTCCC
1647684 AAATATAAATTTTCC
1 AAATATAAATTTTCC
1647699 TTCTTTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATATAAATTTTCCC
Found at i:1649802 original size:50 final size:50
Alignment explanation
Indices: 1649748--1649899 Score: 232
Period size: 50 Copynumber: 3.0 Consensus size: 50
1649738 GCTTAGAATT
* * **
1649748 AACAATTACGGTCACTTTTCTTTATTGTCAAAGGTTGGTGAAGAATAGTC
1 AACAATTACGGCCACCTTTCTCGATTGTCAAAGGTTGGTGAAGAATAGTC
* *
1649798 AACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAACAGTC
1 AACAATTACGGCCACCTTTCTCGATTGTCAAAGGTTGGTGAAGAATAGTC
* *
1649848 AACAATTATGGCCACCTTTCTCGATTGTCAAATGTTGGTGAAGAATAGTC
1 AACAATTACGGCCACCTTTCTCGATTGTCAAAGGTTGGTGAAGAATAGTC
1649898 AA
1 AA
1649900 ATCACTTTGC
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 92 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (50 bp):
AACAATTACGGCCACCTTTCTCGATTGTCAAAGGTTGGTGAAGAATAGTC
Found at i:1651243 original size:44 final size:44
Alignment explanation
Indices: 1651180--1651269 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
1651170 AGTAAAGTTT
1651180 ATAAAAAAATGAAATGCATTGCGTTAGATTCCACGTGTCATTGC
1 ATAAAAAAATGAAATGCATTGCGTTAGATTCCACGTGTCATTGC
1651224 ATAAAAAAATGAAATGCATTGCGTTAGATTCCACGTGTCATTGC
1 ATAAAAAAATGAAATGCATTGCGTTAGATTCCACGTGTCATTGC
1651268 AT
1 AT
1651270 GCATACTTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (44 bp):
ATAAAAAAATGAAATGCATTGCGTTAGATTCCACGTGTCATTGC
Found at i:1651320 original size:31 final size:31
Alignment explanation
Indices: 1651283--1651411 Score: 96
Period size: 31 Copynumber: 4.3 Consensus size: 31
1651273 TACTTTCATA
1651283 CATTTCATGTAACATTTCATGCATGCATTTT
1 CATTTCATGTAACATTTCATGCATGCATTTT
*
1651314 CATTTCATG---CATTTCA--CAT-AATTTT
1 CATTTCATGTAACATTTCATGCATGCATTTT
**
1651339 CATTTCATGCATTTCATTTCATGCATGCA-TTT
1 CATTTCATG--TAACATTTCATGCATGCATTTT
** *
1651371 CATAAACATTTCAAGC--TTCATGCATGCATTTT
1 CAT-TTCATGT-AA-CATTTCATGCATGCATTTT
1651403 CATTTCATG
1 CATTTCATG
1651412 CATTTCACGT
Statistics
Matches: 76, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
25 14 0.18
26 3 0.04
28 7 0.09
30 7 0.09
31 25 0.33
32 15 0.20
33 5 0.07
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (31 bp):
CATTTCATGTAACATTTCATGCATGCATTTT
Found at i:1651327 original size:40 final size:40
Alignment explanation
Indices: 1651276--1651441 Score: 124
Period size: 40 Copynumber: 3.9 Consensus size: 40
1651266 GCATGCATAC
* *
1651276 TTTCATACATTTCATGTAACATTTCATGCATGCATTTTCA
1 TTTCATGCATTTCACGTAACATTTCATGCATGCATTTTCA
* *
1651316 TTTCATGCATTTCACATAATTTTCATTTCATGCATTTCA-TTTCA
1 TTTCATGCATTTCACGTAA----CATTTCATGCA-TGCATTTTCA
*
1651360 -TGCATGCATTTCA--TAAACATTTCAAGCTTCATGCATGCATTTTCA
1 TTTCATGCATTTCACGT-AACA--T-----TTCATGCATGCATTTTCA
* *
1651405 TTTCATGCATTTCACGTAACAATTGATGCATGCATTT
1 TTTCATGCATTTCACGTAACATTTCATGCATGCATTT
1651442 CACATAATTT
Statistics
Matches: 100, Mismatches: 9, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
38 2 0.02
40 31 0.31
41 1 0.01
42 2 0.02
43 12 0.12
44 19 0.19
45 16 0.16
46 12 0.12
47 4 0.04
48 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.43
Consensus pattern (40 bp):
TTTCATGCATTTCACGTAACATTTCATGCATGCATTTTCA
Found at i:1651328 original size:14 final size:14
Alignment explanation
Indices: 1651295--1651487 Score: 75
Period size: 14 Copynumber: 14.9 Consensus size: 14
1651285 TTTCATGTAA
*
1651295 CATTTCA-TGCATG
1 CATTTCATTTCATG
1651308 CATTTTCATTTCATG
1 CA-TTTCATTTCATG
1651323 CATTTCA---CAT-
1 CATTTCATTTCATG
*
1651333 AATTTTCATTTCATG
1 CA-TTTCATTTCATG
1651348 CATTTCATTTCATG
1 CATTTCATTTCATG
*
1651362 CA-TGCATTTCAT-
1 CATTTCATTTCATG
** *
1651374 -A-AACATTTCAAG
1 CATTTCATTTCATG
*
1651386 C--TTCA-TGCATG
1 CATTTCATTTCATG
1651397 CATTTTCATTTCATG
1 CA-TTTCATTTCATG
** *
1651412 CATTTCACGT-A-A
1 CATTTCATTTCATG
* * *
1651424 CAATTGA-TGCATG
1 CATTTCATTTCATG
1651437 CATTTCA---CAT-
1 CATTTCATTTCATG
*
1651447 AATTTTCATTTCATG
1 CA-TTTCATTTCATG
1651462 CATTTCATTTCATG
1 CATTTCATTTCATG
*
1651476 CA-TGCATTTCAT
1 CATTTCATTTCAT
1651488 AAACATTTCA
Statistics
Matches: 135, Mismatches: 25, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
10 2 0.01
11 29 0.21
12 8 0.06
13 26 0.19
14 54 0.40
15 16 0.12
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (14 bp):
CATTTCATTTCATG
Found at i:1651340 original size:25 final size:25
Alignment explanation
Indices: 1651309--1651468 Score: 98
Period size: 25 Copynumber: 6.8 Consensus size: 25
1651299 TCATGCATGC
1651309 ATTTTCATTTCATGCATTTCACATA
1 ATTTTCATTTCATGCATTTCACATA
1651334 ATTTTCATTTCATGCATTT--C---
1 ATTTTCATTTCATGCATTTCACATA
*
1651354 A-TTTCA-TGCATGCATTT--CATA
1 ATTTTCATTTCATGCATTTCACATA
* * *
1651375 A---ACATTTCAAGC--TTCATGCATGC
1 ATTTTCATTTCATGCATTTCA--CAT-A
*
1651398 ATTTTCATTTCATGCATTTCACGTA
1 ATTTTCATTTCATGCATTTCACATA
** * *
1651423 ACAATTGA-TGCATGCATTTCACATA
1 A-TTTTCATTTCATGCATTTCACATA
1651448 ATTTTCATTTCATGCATTTCA
1 ATTTTCATTTCATGCATTTCA
1651469 TTTCATGCAT
Statistics
Matches: 101, Mismatches: 18, Indels: 32
0.67 0.12 0.21
Matches are distributed among these distances:
18 13 0.13
19 7 0.07
20 6 0.06
21 1 0.01
22 3 0.03
23 2 0.02
24 3 0.03
25 48 0.48
26 14 0.14
28 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.44
Consensus pattern (25 bp):
ATTTTCATTTCATGCATTTCACATA
Found at i:1651446 original size:114 final size:115
Alignment explanation
Indices: 1651319--1651530 Score: 392
Period size: 114 Copynumber: 1.8 Consensus size: 115
1651309 ATTTTCATTT
1651319 CATGCATTTCACATAATTTTCATTTCATGCATTTCATTTCATGCATGCATTTCATAAACATTTCA
1 CATGCATTTCACATAATTTTCATTTCATGCATTTCATTTCATGCATGCATTTCATAAACATTTCA
1651384 -AGCTTCATGCATGC-ATTTTCATTTCATGCATTTCACGTAACAATTGATG
66 TA-CTTCATGCATGCAATTTTCATTTCATGCATTTCACGTAACAATTGATG
1651433 CATGCATTTCACATAATTTTCATTTCATGCATTTCATTTCATGCATGCATTTCATAAACATTTCA
1 CATGCATTTCACATAATTTTCATTTCATGCATTTCATTTCATGCATGCATTTCATAAACATTTCA
1651498 TACTTCATGCATGCAAATTTTCATTTCATGCAT
66 TACTTCATGCATGC-AATTTTCATTTCATGCAT
1651531 AAATGCATTT
Statistics
Matches: 95, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
114 77 0.81
115 1 0.01
116 17 0.18
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (115 bp):
CATGCATTTCACATAATTTTCATTTCATGCATTTCATTTCATGCATGCATTTCATAAACATTTCA
TACTTCATGCATGCAATTTTCATTTCATGCATTTCACGTAACAATTGATG
Found at i:1651800 original size:86 final size:86
Alignment explanation
Indices: 1651673--1651879 Score: 263
Period size: 86 Copynumber: 2.4 Consensus size: 86
1651663 CCAATGTGAA
* * * * *
1651673 GAAAAAAAACAGCAATGATGAAGACAAAGCAATATGGAACAGCAAAACAAAGCAATAATGAAGAA
1 GAAAAAAAATAGCAATGATGAAGAAAAAGCAACATAGAACAGCAAAACAAAGCAACAATGAAGAA
*
1651738 AGTAAAAGACAAAGTAACAT-
66 AATAAAAGACAAAGTAACATG
* *
1651758 GAAAAAAAATAGAAATGATGAAGAAAAAAGCAACATAGAACAGCAAAGCAAAGCAACAATGAAGA
1 GAAAAAAAATAGCAATGATGAAG-AAAAAGCAACATAGAACAGCAAAACAAAGCAACAATGAAGA
** *
1651823 AAATGGAAGACAAAGTAACGTG
65 AAATAAAAGACAAAGTAACATG
* *
1651845 GAAAAGCAAAATAGCAATGATGAGGACAAAGCAAC
1 GAAAA--AAAATAGCAATGATGAAGAAAAAGCAAC
1651880 GTGCAAGAGG
Statistics
Matches: 104, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
85 21 0.20
86 53 0.51
87 5 0.05
88 9 0.09
89 16 0.15
ACGTcount: A:0.59, C:0.12, G:0.20, T:0.10
Consensus pattern (86 bp):
GAAAAAAAATAGCAATGATGAAGAAAAAGCAACATAGAACAGCAAAACAAAGCAACAATGAAGAA
AATAAAAGACAAAGTAACATG
Found at i:1652515 original size:21 final size:20
Alignment explanation
Indices: 1652477--1652517 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
1652467 CAAGGTAAAT
*
1652477 TAATTATTTTTTTCTTCATG
1 TAATTATTTTTTTATTCATG
*
1652497 TAATTTTTGTTTTTATTCATG
1 TAATTATT-TTTTTATTCATG
1652518 ATTTAACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (20 bp):
TAATTATTTTTTTATTCATG
Found at i:1654655 original size:50 final size:50
Alignment explanation
Indices: 1654596--1654798 Score: 309
Period size: 50 Copynumber: 4.1 Consensus size: 50
1654586 AGATGCTTAG
* * *
1654596 AGTCAACAATTACGGTCACCTTTCTCTATTGTCAAAGGTTGGTGAAGAAT
1 AGTCAACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
* *
1654646 AGTCAACAATTACGGTCACCTCTCTCGATTGTTAAAGGTTGGTGAAGAAT
1 AGTCAACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
* * *
1654696 AGTCAATAATTACAGCCACCTCTCTCGATTATCAAAGGTTGGTGAA-AAT
1 AGTCAACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
* *
1654745 AGTCAACAATTACGACCACTTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
1 AGTCAACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
1654795 AGTC
1 AGTC
1654799 GAATTACTTT
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
49 44 0.32
50 95 0.68
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (50 bp):
AGTCAACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
Found at i:1654782 original size:99 final size:100
Alignment explanation
Indices: 1654596--1654798 Score: 309
Period size: 99 Copynumber: 2.0 Consensus size: 100
1654586 AGATGCTTAG
* * * * * *
1654596 AGTCAACAATTACGGTCACCTTTCTCTATTGTCAAAGGTTGGTGAAGAATAGTCAACAATTACGG
1 AGTCAACAATTACAGCCACCTCTCTCGATTATCAAAGGTTGGTGAAGAATAGTCAACAATTACGA
* *
1654661 TCACCTCTCTCGATTGTTAAAGGTTGGTGAAGAAT
66 CCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
*
1654696 AGTCAATAATTACAGCCACCTCTCTCGATTATCAAAGGTTGGTGAA-AATAGTCAACAATTACGA
1 AGTCAACAATTACAGCCACCTCTCTCGATTATCAAAGGTTGGTGAAGAATAGTCAACAATTACGA
*
1654760 CCACTTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
66 CCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
1654795 AGTC
1 AGTC
1654799 GAATTACTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
99 53 0.57
100 40 0.43
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (100 bp):
AGTCAACAATTACAGCCACCTCTCTCGATTATCAAAGGTTGGTGAAGAATAGTCAACAATTACGA
CCACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
Found at i:1656421 original size:2 final size:2
Alignment explanation
Indices: 1656410--1656439 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1656400 TAAGAAGGAG
1656410 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1656440 GGTTATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1660354 original size:2 final size:2
Alignment explanation
Indices: 1660347--1660381 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1660337 TTCAAGGAAG
1660347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1660382 ACTGCTATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1663713 original size:106 final size:106
Alignment explanation
Indices: 1663528--1663739 Score: 424
Period size: 106 Copynumber: 2.0 Consensus size: 106
1663518 CAGCAATTTT
1663528 TATTTTGTTTTTAGTTTATTTATTTTATTTGTTTTTATTTAAATTGATAAAACTCTCGATTTATT
1 TATTTTGTTTTTAGTTTATTTATTTTATTTGTTTTTATTTAAATTGATAAAACTCTCGATTTATT
1663593 CATTGTTCTTATAAGGAAATAAGACTTCACCATTCCCTGTG
66 CATTGTTCTTATAAGGAAATAAGACTTCACCATTCCCTGTG
1663634 TATTTTGTTTTTAGTTTATTTATTTTATTTGTTTTTATTTAAATTGATAAAACTCTCGATTTATT
1 TATTTTGTTTTTAGTTTATTTATTTTATTTGTTTTTATTTAAATTGATAAAACTCTCGATTTATT
1663699 CATTGTTCTTATAAGGAAATAAGACTTCACCATTCCCTGTG
66 CATTGTTCTTATAAGGAAATAAGACTTCACCATTCCCTGTG
1663740 GAGACAATCC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.26, C:0.11, G:0.10, T:0.52
Consensus pattern (106 bp):
TATTTTGTTTTTAGTTTATTTATTTTATTTGTTTTTATTTAAATTGATAAAACTCTCGATTTATT
CATTGTTCTTATAAGGAAATAAGACTTCACCATTCCCTGTG
Found at i:1664644 original size:80 final size:80
Alignment explanation
Indices: 1664462--1664742 Score: 268
Period size: 79 Copynumber: 3.5 Consensus size: 80
1664452 AAAAAAACGG
* * * * * *
1664462 GGTTAGAGTATCCCCTTAGAAATAATG-GAGTTGGAGTATTCCTAATAGTG-GAAAATCGGTGTT
1 GGTTAGAGTATCCTCTTAAAAATAACGAG-GTTGGAGTATCCCCAATAGTGAAAAAATCGGTGTT
*
1664525 TT-GGAAATAAAATC-A
65 TTAGG-AATAAAACCGA
* * *
1664540 GGGTTGGAGTATCC-CTTTAGAAATAACGGGGTTGGAGTATCCCCAATAGTGAAAAAATCGGTGT
1 -GGTTAGAGTATCCTC-TTAAAAATAACGAGGTTGGAGTATCCCCAATAGTGAAAAAATCGGTGT
*
1664604 TTTAGGAAGAAAACCGA
64 TTTAGGAATAAAACCGA
* *** * * **
1664621 GGTTAGAGTATCCTCTCAAAAATAACGAGGTTGGAGTATTTTCGATGGT-AAAAAATTAGTGTTT
1 GGTTAGAGTATCCTCTTAAAAATAACGAGGTTGGAGTATCCCCAATAGTGAAAAAATCGGTGTTT
** *
1664685 TAAAAATAAAACCGG
66 TAGGAATAAAACCGA
* *
1664700 GGTTGGAGTGTCCTCTTAAAAATAACGAGGTTGGAGTATCCCC
1 GGTTAGAGTATCCTCTTAAAAATAACGAGGTTGGAGTATCCCC
1664743 GGGGTTAGAG
Statistics
Matches: 168, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.01
79 103 0.61
80 60 0.36
81 4 0.02
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (80 bp):
GGTTAGAGTATCCTCTTAAAAATAACGAGGTTGGAGTATCCCCAATAGTGAAAAAATCGGTGTTT
TAGGAATAAAACCGA
Found at i:1667013 original size:20 final size:20
Alignment explanation
Indices: 1666988--1667042 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
1666978 AAAATGCCTG
1666988 AATGTATCGATACATTGAGA
1 AATGTATCGATACATTGAGA
*
1667008 AATGTATTGATACATTGAGA
1 AATGTATCGATACATTGAGA
*
1667028 AATATATCGATACAT
1 AATGTATCGATACAT
1667043 CTGGGTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGAGA
Found at i:1667093 original size:50 final size:50
Alignment explanation
Indices: 1667032--1667141 Score: 175
Period size: 50 Copynumber: 2.2 Consensus size: 50
1667022 TTGAGAAATA
* *
1667032 TATCGATACATCTGGGTAAAACCTAGAATGAATCAATACAATGAAGAATG
1 TATCGATACATCTAGGTAAAACCCAGAATGAATCAATACAATGAAGAATG
* * *
1667082 TGTCGATACATCTAGGTAAAACCCAGAATGTATCGATACAATGAAGAATG
1 TATCGATACATCTAGGTAAAACCCAGAATGAATCAATACAATGAAGAATG
1667132 TATCGATACA
1 TATCGATACA
1667142 AATTGTGAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (50 bp):
TATCGATACATCTAGGTAAAACCCAGAATGAATCAATACAATGAAGAATG
Found at i:1669530 original size:8 final size:8
Alignment explanation
Indices: 1669519--1669604 Score: 50
Period size: 8 Copynumber: 10.0 Consensus size: 8
1669509 ATTTTTTTCA
1669519 CTTTTTTT
1 CTTTTTTT
1669527 CTTTTCAATTT
1 CTTTT---TTT
1669538 -TTTTCTTT
1 CTTTT-TTT
*
1669546 TTTTCTTTT
1 CTTT-TTTT
1669555 CTTTTTTT
1 CTTTTTTT
1669563 CTTTTTTT
1 CTTTTTTT
*
1669571 -TTAGTTTT
1 CTT-TTTTT
1669579 CATTTTTTTT
1 C--TTTTTTT
*
1669589 CATTTTTT
1 CTTTTTTT
*
1669597 ATTTTTTT
1 CTTTTTTT
1669605 TAAAGCAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
7 2 0.03
8 36 0.58
9 9 0.15
10 10 0.16
11 5 0.08
ACGTcount: A:0.07, C:0.10, G:0.01, T:0.81
Consensus pattern (8 bp):
CTTTTTTT
Found at i:1669533 original size:15 final size:15
Alignment explanation
Indices: 1669513--1669546 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
1669503 TAAATAATTT
*
1669513 TTTTCACTTTTTTTC
1 TTTTCAATTTTTTTC
1669528 TTTTCAATTTTTTTC
1 TTTTCAATTTTTTTC
1669543 TTTT
1 TTTT
1669547 TTTCTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTCAATTTTTTTC
Found at i:1669541 original size:10 final size:8
Alignment explanation
Indices: 1669535--1669604 Score: 58
Period size: 8 Copynumber: 8.9 Consensus size: 8
1669525 TTCTTTTCAA
1669535 TTTTTTTC
1 TTTTTTTC
1669543 TTTTTTTC
1 TTTTTTTC
1669551 ---TTTTC
1 TTTTTTTC
1669556 TTTTTTTC
1 TTTTTTTC
1669564 TTTTTTT-
1 TTTTTTTC
*
1669571 TTAGTTTTC
1 TT-TTTTTC
1669580 ATTTTTTTTC
1 --TTTTTTTC
* *
1669590 ATTTTTTA
1 TTTTTTTC
1669598 TTTTTTT
1 TTTTTTT
1669605 TAAAGCAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
5 5 0.10
7 2 0.04
8 36 0.72
10 5 0.10
11 2 0.04
ACGTcount: A:0.06, C:0.09, G:0.01, T:0.84
Consensus pattern (8 bp):
TTTTTTTC
Found at i:1669545 original size:23 final size:23
Alignment explanation
Indices: 1669508--1669570 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 23
1669498 ATGCTTAAAT
1669508 AATTTTTTTCACTTTTTTTCTTTTC
1 AATTTTTTT--CTTTTTTTCTTTTC
1669533 AATTTTTTTCTTTTTTTCTTTTC
1 AATTTTTTTCTTTTTTTCTTTTC
1669556 --TTTTTTTCTTTTTTT
1 AATTTTTTTCTTTTTTT
1669571 TTAGTTTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.39
23 14 0.37
25 9 0.24
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (23 bp):
AATTTTTTTCTTTTTTTCTTTTC
Found at i:1669578 original size:17 final size:17
Alignment explanation
Indices: 1669558--1669605 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
1669548 TTCTTTTCTT
*
1669558 TTTTTCTTTTTTTTTAG
1 TTTTTCTTTTTTTTCAG
*
1669575 -TTTTCATTTTTTTTCAT
1 TTTTTC-TTTTTTTTCAG
*
1669592 TTTTTATTTTTTTT
1 TTTTTCTTTTTTTT
1669606 AAAGCAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 5 0.19
17 17 0.65
18 4 0.15
ACGTcount: A:0.08, C:0.06, G:0.02, T:0.83
Consensus pattern (17 bp):
TTTTTCTTTTTTTTCAG
Found at i:1669601 original size:13 final size:11
Alignment explanation
Indices: 1669535--1669572 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1669525 TTCTTTTCAA
1669535 TTTTTTTCTTT
1 TTTTTTTCTTT
* *
1669546 TTTTCTT-TTC
1 TTTTTTTCTTT
1669556 TTTTTTTCTTT
1 TTTTTTTCTTT
1669567 TTTTTT
1 TTTTTT
1669573 AGTTTTCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:1671484 original size:2 final size:2
Alignment explanation
Indices: 1671477--1671502 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1671467 CAACTAAAGG
1671477 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1671503 GATGAACGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1672709 original size:24 final size:24
Alignment explanation
Indices: 1672681--1672730 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
1672671 GAATGTATCG
* *
1672681 ATACAATTTGTGATGTTTCGATAC
1 ATACAATTTATGATGTATCGATAC
* *
1672705 ATACATTTTATGGTGTATCGATAC
1 ATACAATTTATGATGTATCGATAC
1672729 AT
1 AT
1672731 TGTATCGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (24 bp):
ATACAATTTATGATGTATCGATAC
Found at i:1672736 original size:13 final size:13
Alignment explanation
Indices: 1672718--1672742 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1672708 CATTTTATGG
1672718 TGTATCGATACAT
1 TGTATCGATACAT
1672731 TGTATCGATACA
1 TGTATCGATACA
1672743 GACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1672852 original size:13 final size:13
Alignment explanation
Indices: 1672834--1672858 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1672824 ACAATGCAAC
1672834 ATGTATCGATACA
1 ATGTATCGATACA
1672847 ATGTATCGATAC
1 ATGTATCGATAC
1672859 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1672853 original size:33 final size:33
Alignment explanation
Indices: 1672816--1672881 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
1672806 TCTTTTTCAA
1672816 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
**
1672849 GTATCGATACTGTGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
1672882 TAAATGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:1684069 original size:10 final size:12
Alignment explanation
Indices: 1684051--1684081 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
1684041 ATTTTTCTTG
*
1684051 AATATATATTTA
1 AATATATATATA
1684063 AATATATATATA
1 AATATATATATA
1684075 AATATAT
1 AATATAT
1684082 GACATTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AATATATATATA
Found at i:1687398 original size:2 final size:2
Alignment explanation
Indices: 1687393--1687418 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1687383 TGTGTGTGTG
1687393 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1687419 ACATATGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1687494 original size:2 final size:2
Alignment explanation
Indices: 1687487--1687517 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1687477 AATTAAAGGA
1687487 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1687518 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.