Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3053563
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 20
Found at i:2444329 original size:95 final size:93
Alignment explanation
Indices: 2444052--2444388 Score: 324
Period size: 95 Copynumber: 3.6 Consensus size: 93
2444042 TCTTTGTTTA
*
2444052 ACTGTATTGGAATTAGGACCTAGTCAAACTCTTTTT-ACCCTCGTTTGACTATATTGGCATTAGG
1 ACTGTATTGGGATTAGGACCTAGTCAAACT-TTTTTCACCCTCGTTTGACTATATTGGCATTAGG
** *
2444116 ACCTAGTCAAACTCTTTTCACCCTCATTTA
65 ACCTAGTCAAACT-TTTTCATTCTCATTTG
** * * * * * *
2444146 ACTACATTGGCG-TTA-GTCTTGGTCAAACTTTTTTTTCACCCTTGTTTGATTGTATTGGCATTA
1 ACTGTATTGG-GATTAGGACCTAGTCAAAC--TTTTTTCACCCTCGTTTGACTATATTGGCATTA
* * *
2444209 GGACTTAGCCAAACTCTTTCCATTCTCATTTG
63 GGACCTAGTCAAACT-TTTTCATTCTCATTTG
* * *
2444241 ACTGTATTGGGATTAGGACCTAGTCAAACTTTTTCTCACCCTCATTTAACTATATTGGCGTTAGG
1 ACTGTATTGGGATTAGGACCTAGTCAAACTTTTT-TCACCCTCGTTTGACTATATTGGCATTAGG
*
2444306 ACCTGGTCAAACTTTTTCGATTCTCATTTG
65 ACCTAGTCAAACTTTTTC-ATTCTCATTTG
* ** ** * *
2444336 ATTGTATT-GG-TTACCACCCTAGTCAAACCCTTTTCATCCTTGTTTGACTATAT
1 ACTGTATTGGGATTAGGA-CCTAGTCAAACTTTTTTCACCCTCGTTTGACTATAT
2444389 CGATTACCGC
Statistics
Matches: 195, Mismatches: 39, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
93 30 0.15
94 42 0.22
95 113 0.58
96 10 0.05
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (93 bp):
ACTGTATTGGGATTAGGACCTAGTCAAACTTTTTTCACCCTCGTTTGACTATATTGGCATTAGGA
CCTAGTCAAACTTTTTCATTCTCATTTG
Found at i:2444592 original size:137 final size:138
Alignment explanation
Indices: 2444346--2444617 Score: 350
Period size: 137 Copynumber: 2.0 Consensus size: 138
2444336 ATTGTATTGG
* *
2444346 TTACCACCCTAGTCAAACCCTTTTCATCCTTGTTTGACTATATCGATTACCGCCTTGGTCAAACC
1 TTACCACCCTAGTCAAACCCTTTTCATCCTTGTTTGACTATATCAATTACCACCTTGGTCAAACC
* * * * *
2444411 CTTTTCATTCTCATTTAACTATATCGGTTATCACCTTGGTCAAACCATTTTCATT-TTATTTAAC
66 CTTTTCACTCTCAATTAACTATATCAGTTAACACCCTGGTCAAACCATTTTCATTCTTATTTAAC
2444475 TATATCGA
131 TATATCGA
* * * *
2444483 TTACCACCCTGGTCAAACCCTTTTCATTCTTGTTTGATTGTATCAATTACCACCTTGGTCAAACC
1 TTACCACCCTAGTCAAACCCTTTTCATCCTTGTTTGACTATATCAATTACCACCTTGGTCAAACC
* * * * * * * *
2444548 CTTTTCGCTCTTAATTGATTGTAGT-AGTTAACACCCTGGTCAAACCCTTTTCATTCTTGTTTGA
66 CTTTTCACTCTCAATTAACTATA-TCAGTTAACACCCTGGTCAAACCATTTTCATTCTTATTTAA
2444612 CTATAT
130 CTATAT
2444618 TGGTTAACCC
Statistics
Matches: 114, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
137 101 0.89
138 13 0.11
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (138 bp):
TTACCACCCTAGTCAAACCCTTTTCATCCTTGTTTGACTATATCAATTACCACCTTGGTCAAACC
CTTTTCACTCTCAATTAACTATATCAGTTAACACCCTGGTCAAACCATTTTCATTCTTATTTAAC
TATATCGA
Found at i:2444625 original size:46 final size:46
Alignment explanation
Indices: 2444307--2444623 Score: 298
Period size: 46 Copynumber: 6.9 Consensus size: 46
2444297 GGCGTTAGGA
* * * * *
2444307 CCTGGTCAAA-CTTTTTCGATTCTCATTTGATTGTATTGGTTACCAC
1 CCTGGTCAAACCCTTTTC-ATTCTTATTTGACTATATCGGTTACCAC
* * * * *
2444353 CCTAGTCAAACCCTTTTCATCCTTGTTTGACTATATCGATTACCGC
1 CCTGGTCAAACCCTTTTCATTCTTATTTGACTATATCGGTTACCAC
* * * *
2444399 CTTGGTCAAACCCTTTTCATTCTCATTTAACTATATCGGTTATCAC
1 CCTGGTCAAACCCTTTTCATTCTTATTTGACTATATCGGTTACCAC
* * * *
2444445 CTTGGTCAAACCATTTTCATT-TTATTTAACTATATCGATTACCAC
1 CCTGGTCAAACCCTTTTCATTCTTATTTGACTATATCGGTTACCAC
* * * **
2444490 CCTGGTCAAACCCTTTTCATTCTTGTTTGATTGTATCAATTACCAC
1 CCTGGTCAAACCCTTTTCATTCTTATTTGACTATATCGGTTACCAC
* ** * * * * *
2444536 CTTGGTCAAACCCTTTTCGCTCTTAATTGATTGTAGT-AGTTAACAC
1 CCTGGTCAAACCCTTTTCATTCTTATTTGACTATA-TCGGTTACCAC
* *
2444582 CCTGGTCAAACCCTTTTCATTCTTGTTTGACTATATTGGTTA
1 CCTGGTCAAACCCTTTTCATTCTTATTTGACTATATCGGTTA
2444624 ACCCTTTTTG
Statistics
Matches: 222, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
45 41 0.18
46 174 0.78
47 7 0.03
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (46 bp):
CCTGGTCAAACCCTTTTCATTCTTATTTGACTATATCGGTTACCAC
Found at i:2446889 original size:19 final size:19
Alignment explanation
Indices: 2446845--2446892 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
2446835 AAACAGTAAC
*
2446845 TGTATCAATACATAAGTGT
1 TGTATCGATACATAAGTGT
2446864 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
2446883 TGTATCGATA
1 TGTATCGATA
2446893 TAATTTATCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:2446964 original size:13 final size:13
Alignment explanation
Indices: 2446946--2446973 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2446936 CATTACTCAA
2446946 TGTATCGATACAT
1 TGTATCGATACAT
2446959 TGTATCGATACAT
1 TGTATCGATACAT
2446972 TG
1 TG
2446974 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2446968 original size:33 final size:33
Alignment explanation
Indices: 2446926--2446991 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2446916 GCCAAGGAAA
2446926 TGTATCGATACATT-ACTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
2446959 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
2446992 CTGGGAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:2448450 original size:30 final size:30
Alignment explanation
Indices: 2448409--2448520 Score: 152
Period size: 30 Copynumber: 3.7 Consensus size: 30
2448399 ATACCTTTTT
2448409 AAAGTCCACGACTCAGTGGCATTTTGCCCC
1 AAAGTCCACGACTCAGTGGCATTTTGCCCC
* *
2448439 AAAGCCCACGACTCAGTGGCATTTTGTCCC
1 AAAGTCCACGACTCAGTGGCATTTTGCCCC
* * * *
2448469 AAAGTCCATGACTTAGTGGCATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCA-TTTTGCCCC
*
2448500 AAAGTCCACAACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
2448521 ATCTCTTTTC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
30 46 0.66
31 24 0.34
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATTTTGCCCC
Found at i:2448505 original size:31 final size:31
Alignment explanation
Indices: 2448409--2448591 Score: 176
Period size: 31 Copynumber: 5.9 Consensus size: 31
2448399 ATACCTTTTT
* *
2448409 AAAGTCCACGACTCAGTGGCA-TTTTGCCCC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
2448439 AAAGCCCACGACTCAGTGGCATTTTGTC-CC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
2448469 AAAGTCCATGACTTAGTGGCATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
2448500 AAAGTCCACAACTCAGTGGCAATCTCTTT-T-C
1 AAAGTCCACGACTCAGTGGC-AT-TTTTTCTCC
* * *
2448531 AAAGTCCATGACTCAGTGGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* * * *
2448562 AAAGCCCACAACTCCGTGGCACCTTTTTCT
1 AAAGTCCACGACTCAGTGGCA-TTTTTTCT
2448592 TTTCAAAGTC
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
29 3 0.02
30 49 0.39
31 60 0.48
32 9 0.07
33 4 0.03
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTTTCTCC
Found at i:2448549 original size:62 final size:61
Alignment explanation
Indices: 2448403--2448644 Score: 226
Period size: 62 Copynumber: 4.0 Consensus size: 61
2448393 CTTCAAATAC
* * * * *
2448403 CTTTTTAAAGTCCACGACTCAGTGGCAT-TTTGCCCCAAAGCCCACGACTCAGTGGC-ATT
1 CTTTTCAAAGTCCATGACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCAATT
* * * *
2448462 -TTGTCCCAAAGTCCATGACTTAGTGGCATTTTTTCTCCAAAGTCCACAACTCAGTGGCAATCT
1 CTT-T-TCAAAGTCCATGACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCAAT-T
* * *
2448525 CTTTTCAAAGTCCATGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 CTTTTCAAAGTCCATGACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCA----ATT
* * * * *
2448590 CTTTTCAAAGTCCATAACTCTGTGGCATCCTTT-T--AAAGTCCACAACTCCGTGGCA
1 CTTTTCAAAGTCCATGACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCA
2448645 CCTTATTCCT
Statistics
Matches: 154, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
58 2 0.01
59 1 0.01
60 20 0.13
61 24 0.16
62 70 0.45
63 2 0.01
64 3 0.02
65 31 0.20
66 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (61 bp):
CTTTTCAAAGTCCATGACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCAATT
Found at i:2448666 original size:33 final size:32
Alignment explanation
Indices: 2448532--2448812 Score: 189
Period size: 33 Copynumber: 8.6 Consensus size: 32
2448522 TCTCTTTTCA
** * * **
2448532 AAGTCCATGACTCAGTGGCATCTTTT-CTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* *
2448563 AAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* *
2448595 CAAAGTCCATAACTCTGTGGCA-----TCCTTTT
1 --AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
2448624 AAAGTCCACAACTCCGTGGCACCTTATTCCTTTT
1 -AAGTCCACAACTCCGTGGCACCTT-TTCCTTTT
* *
2448658 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTA
1 AAGTCCACAACTCCGTGGCA-CCTTTTCCTTTT
* * *
2448691 AAGCCCACAACACCGTGGCACTCTTTATCTTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTT-TCCTTTT
** * **
2448725 AAAGTCCACAACTCTTTGGCATCTCTTTCCTTCA
1 -AAGTCCACAACTCCGTGGCACCT-TTTCCTTTT
* * *
2448759 AAGTCCACAATTCAGTGGCATCCTTTTTTCC-TGT
1 AAGTCCACAACTCCGTGGCA-CC--TTTTCCTTTT
*
2448793 AAGTCCACAACTCAGTGGCA
1 AAGTCCACAACTCCGTGGCA
2448813 TATGCCCAAT
Statistics
Matches: 198, Mismatches: 35, Indels: 31
0.75 0.13 0.12
Matches are distributed among these distances:
28 19 0.10
29 6 0.03
31 21 0.11
32 4 0.02
33 65 0.33
34 59 0.30
35 23 0.12
36 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.33
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
Found at i:2448745 original size:101 final size:102
Alignment explanation
Indices: 2448620--2448812 Score: 248
Period size: 101 Copynumber: 1.9 Consensus size: 102
2448610 TGTGGCATCC
** *
2448620 TTTTAAAGTCCACAACTCCGTGGCACCT-TATTCCTTTTAAGTCCACAACTCCGTGGCAT-C-TT
1 TTTTAAAGTCCACAACTCCGTGGCACCTCT-TTCCTTCAAAGTCCACAACTCAGTGGCATCCTTT
* *
2448682 TTTCCTTTAAAGCCCACAACACCGTGGCACTCTTTATCT
65 TTTCCTGT-AAGCCCACAACACAGTGGCACTCTTTATCT
** * *
2448721 TTTTAAAGTCCACAACTCTTTGGCATCTCTTTCCTTCAAAGTCCACAATTCAGTGGCATCCTTTT
1 TTTTAAAGTCCACAACTCCGTGGCACCTCTTTCCTTCAAAGTCCACAACTCAGTGGCATCCTTTT
* *
2448786 TTCCTGTAAGTCCACAACTCAGTGGCA
66 TTCCTGTAAGCCCACAACACAGTGGCA
2448813 TATGCCCAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
101 50 0.64
102 19 0.24
103 9 0.12
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.34
Consensus pattern (102 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTCTTTCCTTCAAAGTCCACAACTCAGTGGCATCCTTTT
TTCCTGTAAGCCCACAACACAGTGGCACTCTTTATCT
Found at i:2448756 original size:68 final size:66
Alignment explanation
Indices: 2448524--2448784 Score: 277
Period size: 68 Copynumber: 4.0 Consensus size: 66
2448514 AGTGGCAATC
** *
2448524 TCTTTTCAAAGTCCATGACTCAGTGGCATCT-TTTCTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TCTTTTCAAAGTCCACAACTCTGTGGCATCTCTTTCTTCAAAGCCCACAACTCCGTGGCACCTTT
*
2448588 T
66 A
* *
2448589 TCTTTTCAAAGTCCATAACTCTGTGGCATC-C-TT-TT-AAAGTCCACAACTCCGTGGCACC-TT
1 TCTTTTCAAAGTCCACAACTCTGTGGCATCTCTTTCTTCAAAGCCCACAACTCCGTGGCACCTTT
2448649 A
66 A
* * * *
2448650 TTCCTTTT--AAGTCCACAACTCCGTGGCATCTTTTTCCTTTAAAGCCCACAACACCGTGGCACT
1 -T-CTTTTCAAAGTCCACAACTCTGTGGCATCTCTTT-CTTCAAAGCCCACAACTCCGTGGCAC-
2448713 CTTTA
62 CTTTA
* * * * *
2448718 TCTTTTTAAAGTCCACAACTCTTTGGCATCTCTTTCCTTCAAAGTCCACAATTCAGTGGCATCCT
1 TCTTTTCAAAGTCCACAACTCTGTGGCATCTCTTT-CTTCAAAGCCCACAACTCCGTGGCA-CCT
2448783 TT
64 TT
2448785 TTTCCTGTAA
Statistics
Matches: 166, Mismatches: 17, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
61 22 0.13
62 23 0.14
63 9 0.05
64 2 0.01
65 30 0.18
66 25 0.15
67 2 0.01
68 52 0.31
69 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (66 bp):
TCTTTTCAAAGTCCACAACTCTGTGGCATCTCTTTCTTCAAAGCCCACAACTCCGTGGCACCTTT
A
Found at i:2448925 original size:43 final size:43
Alignment explanation
Indices: 2448862--2449283 Score: 340
Period size: 43 Copynumber: 9.1 Consensus size: 43
2448852 CCTTTGTCAT
* *
2448862 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAGCAC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
2448905 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCAC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGG------CAC
* * * *
2448954 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGTACCTTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGG------CAC
* * * * *
2449003 CTTTAAGCCCAATATCGCTGGCCTCGAATTAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATT---G-----G-CAC
*
2449055 CTTTAAGACCAATATCGCTAGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* *
2449098 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA---C
*
2449144 ATCTTTAAGACCAATATCGCTGGCCTTAAATCAGCACATTGGCAC
1 --CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
2449189 CTTTATGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C
* * *
2449233 TTGTCTTTAAGAACCAATGTCGCTGGCCTTGAATCAGCACATCGACAC
1 ----CTTTAAG-ACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
2449281 CTT
1 CTT
2449284 CATCCTTAAG
Statistics
Matches: 321, Mismatches: 33, Indels: 49
0.80 0.08 0.12
Matches are distributed among these distances:
43 116 0.36
44 5 0.02
45 1 0.00
46 1 0.00
48 46 0.14
49 113 0.35
52 38 0.12
57 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (43 bp):
CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:2448959 original size:49 final size:49
Alignment explanation
Indices: 2448818--2449319 Score: 470
Period size: 49 Copynumber: 10.5 Consensus size: 49
2448808 TGGCATATGC
* * * * *
2448818 CCAATATCGCTGGCCTTGAATAAGCATATTGGCGCCTTTGTCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCACCTTTAAGT
* *
2448870 CCAATGTCGCTGGCCTTGAATCAGCACATT---A---GCACCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
* *
2448913 CCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
* * * * *
2448962 CCAATGTTGCTGGCCTTGAATCAGCACATTGGTACCTTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
* * * * * *
2449011 CCAATATCGCTGGCCTCGAATTAGCATATTGGCGCCTTTGTCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCACCTTTAAGT
*
2449063 CCAATATCGCTAGCCTTGAATCAGCACATTGG------CACCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
* * *
2449106 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
* *
2449154 CCAATATCGCTGGCCTTAAATCAGCACATTGG------CACCTTTATGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
* ** *
2449197 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGAA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAG-T
* * *
2449246 CCAATGTCGCTGGCCTTGAATCAGCACATCGACACCTTCATCC-TTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCA-CCTTTAAGT
* *
2449295 CCAATGTCGTTGGCCTTGAATCAGC
1 CCAATATCGCTGGCCTTGAATCAGC
2449320 GTATTGGTAT
Statistics
Matches: 378, Mismatches: 49, Indels: 49
0.79 0.10 0.10
Matches are distributed among these distances:
43 115 0.30
46 1 0.00
48 45 0.12
49 144 0.38
50 5 0.01
51 2 0.01
52 66 0.17
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGT
Found at i:2449378 original size:284 final size:285
Alignment explanation
Indices: 2448818--2449380 Score: 727
Period size: 284 Copynumber: 2.0 Consensus size: 285
2448808 TGGCATATGC
* *
2448818 CCAATATCGCTGGCCTTGAATAAGCATATTGGCGCCTTTGTCATCTTTAAGACCAATGTCGCTGG
1 CCAATATCGCTGGCCTTGAATAAGCATATTGGCACC--T-TCATCTTTAAGACCAATATCGCTGG
* * *
2448883 CCTTGAATCAGCACATTAGCACCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCAC
63 CCTTAAATCAGCACATTAGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * * ** *
2448948 CTTCACCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGTACCTTCATCTTTAAGCCC
128 CTTCACCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATCGACACCTTCATCCTTAAGCCC
* * ** * *
2449013 AATATCGCTGGCCTCGAATTAGCATATTGGCGCCTTTGTCATCTTTAAGACCAATATCGCTAGCC
193 AATATCGCTGGCCTCGAATCAGCATATTGGCACCTTTAACATCTCTAAGACCAACATCGCTAGCC
2449078 TTGAATCAGCACATTGGCACCTTTAAGT
258 TTGAATCAGCACATTGGCACCTTTAAGT
*
2449106 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TCATCTTTAAGACCAATATCGCTGGCCT
1 CCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGACCAATATCGCTGGCCT
* * *
2449170 TAAATCAGCACATTGGCACCTTTATGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
66 TAAATCAGCACATTAGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
** *
2449235 -GTCTTTAAGAACCAATGTCGCTGGCCTTGAATCAGCACATCGACACCTTCATCCTTAAGTCCAA
131 CACCTTTAAG-ACCAATGTCGCTGGCCTTGAATCAGCACATCGACACCTTCATCCTTAAGCCCAA
* * * * * * * * * *
2449299 TGTCGTTGGCCTTGAATCAGCGTATTGGTATCTTTAACAT-TCCTAAGCCCAACGTCGTTGGCCT
195 TATCGCTGGCCTCGAATCAGCATATTGGCACCTTTAACATCT-CTAAGACCAACATCGCTAGCCT
** *
2449363 TGTCTCAGTACATTGGCA
259 TGAATCAGCACATTGGCA
2449381 TTCTTCTTCA
Statistics
Matches: 236, Mismatches: 37, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
283 8 0.03
284 194 0.82
288 34 0.14
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (285 bp):
CCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGACCAATATCGCTGGCCT
TAAATCAGCACATTAGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
CACCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATCGACACCTTCATCCTTAAGCCCAAT
ATCGCTGGCCTCGAATCAGCATATTGGCACCTTTAACATCTCTAAGACCAACATCGCTAGCCTTG
AATCAGCACATTGGCACCTTTAAGT
Found at i:2450187 original size:21 final size:19
Alignment explanation
Indices: 2450163--2450299 Score: 73
Period size: 19 Copynumber: 7.7 Consensus size: 19
2450153 TTTCAACAAT
2450163 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAA-AGT-A
* *
2450184 TTGTATCGATACATAAGTG
1 TTGTATCGATACAAAAGTA
2450203 TTGTATCGATAC---A--A
1 TTGTATCGATACAAAAGTA
* * *
2450217 -TGTATCGATGCATAAGTG
1 TTGTATCGATACAAAAGTA
2450235 TTGTATCGATAC---A--A
1 TTGTATCGATACAAAAGTA
* * *
2450249 -TGTATCGATGCATAAGTG
1 TTGTATCGATACAAAAGTA
* * *
2450267 TTGTATCGATGCATAAGTG
1 TTGTATCGATACAAAAGTA
2450286 TTGTATCGATACAA
1 TTGTATCGATACAA
2450300 TGTATCGATG
Statistics
Matches: 93, Mismatches: 11, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
13 20 0.22
16 4 0.04
19 52 0.56
20 3 0.03
21 14 0.15
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.34
Consensus pattern (19 bp):
TTGTATCGATACAAAAGTA
Found at i:2450231 original size:32 final size:32
Alignment explanation
Indices: 2450185--2450276 Score: 175
Period size: 32 Copynumber: 2.9 Consensus size: 32
2450175 AAACAGTAAT
*
2450185 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATGCATAAGTGTTGTATCGATACAA
2450217 TGTATCGATGCATAAGTGTTGTATCGATACAA
1 TGTATCGATGCATAAGTGTTGTATCGATACAA
2450249 TGTATCGATGCATAAGTGTTGTATCGAT
1 TGTATCGATGCATAAGTGTTGTATCGAT
2450277 GCATAAGTGT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (32 bp):
TGTATCGATGCATAAGTGTTGTATCGATACAA
Found at i:2450282 original size:83 final size:83
Alignment explanation
Indices: 2450184--2450338 Score: 292
Period size: 83 Copynumber: 1.9 Consensus size: 83
2450174 CAAACAGTAA
2450184 TTGTATCGATACATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGTTGTATCGATACAA
1 TTGTATCGATACATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGTTGTATCGATACAA
2450249 TGTATCGATGCATAAGTG
66 TGTATCGATGCATAAGTG
* *
2450267 TTGTATCGATGCATAAGTGTTGTATCGATACAATGTATCGATGCATAATTGTTGTATCGATACAA
1 TTGTATCGATACATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGTTGTATCGATACAA
2450332 TGTATCG
66 TGTATCG
2450339 CTACAAAGCT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 70 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (83 bp):
TTGTATCGATACATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGTTGTATCGATACAA
TGTATCGATGCATAAGTG
Found at i:2450304 original size:32 final size:32
Alignment explanation
Indices: 2450268--2450338 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
2450258 GCATAAGTGT
2450268 TGTATCGATGCATAAGTGTTGTATCGATACAA
1 TGTATCGATGCATAAGTGTTGTATCGATACAA
*
2450300 TGTATCGATGCATAATTGTTGTATCGATACAA
1 TGTATCGATGCATAAGTGTTGTATCGATACAA
2450332 TGTATCG
1 TGTATCG
2450339 CTACAAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.37
Consensus pattern (32 bp):
TGTATCGATGCATAAGTGTTGTATCGATACAA
Found at i:2450320 original size:51 final size:51
Alignment explanation
Indices: 2450217--2450327 Score: 213
Period size: 51 Copynumber: 2.2 Consensus size: 51
2450207 ATCGATACAA
2450217 TGTATCGATGCATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGT
1 TGTATCGATGCATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGT
*
2450268 TGTATCGATGCATAAGTGTTGTATCGATACAATGTATCGATGCATAATTGT
1 TGTATCGATGCATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGT
2450319 TGTATCGAT
1 TGTATCGAT
2450328 ACAATGTATC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.37
Consensus pattern (51 bp):
TGTATCGATGCATAAGTGTTGTATCGATACAATGTATCGATGCATAAGTGT
Found at i:2450401 original size:13 final size:13
Alignment explanation
Indices: 2450383--2450410 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2450373 ATTACTCAAA
2450383 TGTATCGATACAT
1 TGTATCGATACAT
2450396 TGTATCGATACAT
1 TGTATCGATACAT
2450409 TG
1 TG
2450411 ATTTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2453686 original size:20 final size:20
Alignment explanation
Indices: 2453661--2453712 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
2453651 TACAAGCCAA
**
2453661 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
2453681 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
2453700 TGTATCGATACAA
1 TGTATCGATACAA
2453713 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:2455795 original size:21 final size:20
Alignment explanation
Indices: 2455765--2455808 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
2455755 GCGACTAGTG
2455765 TGGGACTGCCCGGTTGTGACC
1 TGGGACTG-CCGGTTGTGACC
*
2455786 TGGGAGTGCCGGTTGTGACC
1 TGGGACTGCCGGTTGTGACC
2455806 TGG
1 TGG
2455809 TGGTGCTGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.09, C:0.23, G:0.43, T:0.25
Consensus pattern (20 bp):
TGGGACTGCCGGTTGTGACC
Found at i:2456257 original size:13 final size:13
Alignment explanation
Indices: 2456239--2456276 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2456229 ATAATCCCCC
2456239 TGTATCGATACAG
1 TGTATCGATACAG
*
2456252 TGTATCGATACAT
1 TGTATCGATACAG
2456265 TGTATCGATACA
1 TGTATCGATACA
2456277 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2462461 original size:13 final size:13
Alignment explanation
Indices: 2462443--2462468 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2462433 CAATTTTTTG
2462443 TGTATCGATACAT
1 TGTATCGATACAT
2462456 TGTATCGATACAT
1 TGTATCGATACAT
2462469 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2462480 original size:32 final size:33
Alignment explanation
Indices: 2462423--2462486 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2462413 TACAAGCCAA
**
2462423 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2462456 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2462487 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2465003 original size:20 final size:20
Alignment explanation
Indices: 2464978--2465031 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
2464968 TTTACCTAGA
2464978 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTTGCAT
2464998 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTTGCAT
2465018 TGTATCGATACATT
1 TGTATCGATACATT
2465032 CAGGCTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATTTTGCAT
Found at i:2467478 original size:51 final size:51
Alignment explanation
Indices: 2467321--2467487 Score: 160
Period size: 51 Copynumber: 3.3 Consensus size: 51
2467311 TTTTCATCTT
* * * * * **
2467321 GGGGATACTCCAA-TCCCGGTTTCATGTCCAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAACT-CCGATTTTATTTTCAAAACATCAAATTTTCACAATC
* * * *
2467372 GGGGATACTCCAACTCCGATTTTA-TTTCTAAAGCATC-GATTTACTGCAATC
1 GGGGATACTCCAACTCCGATTTTATTTTC-AAAACATCAAATTTTC-ACAATC
* *
2467423 GGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAAATTTTCACAATT
1 GGGGATACTCCAACTCCGATTTTATTTTCAAAACATCAAATTTTCACAATC
*
2467474 GGGGATACTTCAAC
1 GGGGATACTCCAAC
2467488 CTCGTTATTT
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
50 6 0.06
51 78 0.83
52 10 0.11
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTTATTTTCAAAACATCAAATTTTCACAATC
Found at i:2467675 original size:51 final size:50
Alignment explanation
Indices: 2467613--2467782 Score: 182
Period size: 51 Copynumber: 3.3 Consensus size: 50
2467603 TATTTTCGAG
* *
2467613 GGGATACTCCAACCCCGATTTTGTTTCTAAAATACCAATTTTCCACAATC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
***
2467663 GAGGATACTCCAACTTTGATTTTATTT-TCAAAACACCAA-TTTCTCACAATC
1 G-GGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTC-CACAATC
** * * * *
2467714 GGAGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCATAATC
1 GG-GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
2467765 GGGGATACTCCAACCCCG
1 -GGGATACTCCAACCCCG
2467783 TTATTTTTGA
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
50 7 0.07
51 85 0.86
52 7 0.07
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (50 bp):
GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
Found at i:2474708 original size:288 final size:289
Alignment explanation
Indices: 2474185--2474760 Score: 1118
Period size: 288 Copynumber: 2.0 Consensus size: 289
2474175 GAATATGACG
*
2474185 AATGAATTCGTGAGTCTGTTAATGCCTTAGAAGAACGAAGAACTAATGAAGATGGGGTCTTGATG
1 AATGAATTCGTGAGTCTGTTAATGCCTTAGAAGAACGAAGAACTAATGAAGATGGGGTCTTGATA
2474250 TGTCTCTCCCTCATGGGTATAGAAAAGAGACTTGATGAAAGCTTTCGATGTTATGCTTCGAGGTG
66 TGTCTCTCCCTCATGGGTATAGAAAAGAGACTTGATGAAAGCTTTCGATGTTATGCTTCGAGGTG
2474315 GATGGAAAAGGCCACCCAGATTCAGCCTTTGTTGACGGAAAAGGAAATAATCATCAGGTTTATTG
131 GATGGAAAAGGCCACCCAGATTCAGCCTTTGTTGACGGAAAAGGAAATAATCATCAGGTTTATTG
*
2474380 GCACATTACGGCCACCATATTATGATGAAGTGGTAAGGAGATTTCCAAAGAGTTTTGCAGATGTA
196 GCACATTACGGCCACCATATTATGATGAAGTGGCAAGGAGATTTCCAAAGAGTTTTGCAGATGTA
2474445 ATAGTGCTCTGTGGGACGATGGATGAAGT
261 ATAGTGCTCTGTGGGACGATGGATGAAGT
2474474 AATGAATTCGTGAGTCTGTTAATGCCTTAGAAGAACGAAGAACTAATGAAGAT-GGGTCTTGATA
1 AATGAATTCGTGAGTCTGTTAATGCCTTAGAAGAACGAAGAACTAATGAAGATGGGGTCTTGATA
2474538 TGTCTCTCCCTCATGGGTATAGAAAAGAGACTTGATGAAAGCTTTCGATGTTATGCTTCGAGGTG
66 TGTCTCTCCCTCATGGGTATAGAAAAGAGACTTGATGAAAGCTTTCGATGTTATGCTTCGAGGTG
*
2474603 GATGGAAAAGGCCACCCAGATTCAGCCTTTGTTGACGGAAAAGGAAATGATCATCAGGTTTATTG
131 GATGGAAAAGGCCACCCAGATTCAGCCTTTGTTGACGGAAAAGGAAATAATCATCAGGTTTATTG
2474668 GCACATTACGGCCACCATATTATGATGAAGTGGCAAGGAGATTTCCAAAGAGTTTTGCAGATGTA
196 GCACATTACGGCCACCATATTATGATGAAGTGGCAAGGAGATTTCCAAAGAGTTTTGCAGATGTA
2474733 ATAGTGCTCTGTGGGACGATGGATGAAG
261 ATAGTGCTCTGTGGGACGATGGATGAAG
2474761 CTCTAAAAAA
Statistics
Matches: 284, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
288 231 0.81
289 53 0.19
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (289 bp):
AATGAATTCGTGAGTCTGTTAATGCCTTAGAAGAACGAAGAACTAATGAAGATGGGGTCTTGATA
TGTCTCTCCCTCATGGGTATAGAAAAGAGACTTGATGAAAGCTTTCGATGTTATGCTTCGAGGTG
GATGGAAAAGGCCACCCAGATTCAGCCTTTGTTGACGGAAAAGGAAATAATCATCAGGTTTATTG
GCACATTACGGCCACCATATTATGATGAAGTGGCAAGGAGATTTCCAAAGAGTTTTGCAGATGTA
ATAGTGCTCTGTGGGACGATGGATGAAGT
Found at i:2480169 original size:15 final size:15
Alignment explanation
Indices: 2480148--2480185 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
2480138 AAATAATAAC
2480148 AAAAAAAAACAAA-A
1 AAAAAAAAACAAAGA
*
2480162 AAAGAAAAAAGAAAGA
1 AAA-AAAAAACAAAGA
2480178 AAAAAAAA
1 AAAAAAAA
2480186 GAACTTGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 14 0.67
16 4 0.19
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (15 bp):
AAAAAAAAACAAAGA
Found at i:2480180 original size:19 final size:18
Alignment explanation
Indices: 2480148--2480183 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2480138 AAATAATAAC
2480148 AAAAAAAAACAAAAAAAG
1 AAAAAAAAACAAAAAAAG
*
2480166 AAAAAAGAAAGAAAAAAA
1 AAAAAA-AAACAAAAAAA
2480184 AAGAACTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (18 bp):
AAAAAAAAACAAAAAAAG
Found at i:2480183 original size:14 final size:14
Alignment explanation
Indices: 2480148--2480188 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
2480138 AAATAATAAC
*
2480148 AAAAAAAAACAAAA
1 AAAAAAAAAGAAAA
*
2480162 AAAGAAAAAAGAAAG
1 AAA-AAAAAAGAAAA
2480177 AAAAAAAAAGAA
1 AAAAAAAAAGAA
2480189 CTTGCTTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:2481497 original size:61 final size:55
Alignment explanation
Indices: 2481262--2481505 Score: 294
Period size: 55 Copynumber: 4.3 Consensus size: 55
2481252 TTCACCCTTT
* * * *
2481262 AGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAATTGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
2481317 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
2481372 AGTCCTCAAAGAGCAGGATGCCATTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * * *
2481427 AATCCTCAAAGAGCAAGATACTTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCC
1 AGTCCTCAAAGAGC-AG-GA---T-GCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
2481487 TAGTCGTCAAAGAGTAGGA
1 -AGTCCTCAAAGAGCAGGA
2481506 CGCTCTCTCC
Statistics
Matches: 166, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
54 3 0.02
55 114 0.69
56 2 0.01
57 1 0.01
59 1 0.01
60 7 0.04
61 38 0.23
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:2481643 original size:265 final size:268
Alignment explanation
Indices: 2481164--2481715 Score: 792
Period size: 265 Copynumber: 2.1 Consensus size: 268
2481154 CACTTTTCAG
* *
2481164 TCCTCAAAGAGCAGGAGCCCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTCTAGTCCT
1 TCCTCAAAGAGCAAGAGCACTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTCTAGTCCT
* *
2481229 CAAAGAGTAGGACGTTCTCTCCTTTCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCC
66 CAAAGAGTAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTCAAAGCC
* *
2481294 CACACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTT
131 CACACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTT
*
2481359 GGTGGCATTTTCCAGTCCTCAAAGAGCAGG-A-T-GCCATTCAAAGCCCACACAAGTTGGTGGCA
196 GGTGGCATTTTCCAGTCCTCAAAGAGCAGGAATTCGCCATTCAAAGCCCACACAAGTTGGTAGCA
* *
2481421 TTTTCCAA
261 CTTCCCAA
* *
2481429 TCCTCAAAGAGCAAGA-TACTTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTC
1 TCCTCAAAGAGCAAGAGCACTTT-TCCTTTTAAAACCCACACAAGTTGGTGGCACCTT-CTAGTC
* * * * *
2481492 GTCAAAGAGTAGGACGCTCTCTCCTTTCGCCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTAAAT
64 CTCAAAGAGTAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTCAAAG
* * *
2481557 CCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACATAA
129 CCCACACAAATTGGTGGCACCTTT-CAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAA
* * * *
2481621 GTTGGTGGCGTTTTCTAGTCCTCAAAGAGCAGGATACTTTCTCCTTTCAAAGCCCACACAAGTTG
193 GTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA-A--TTCGCCATTCAAAGCCCACACAAGTTG
*
2481686 GTAGCACTTCCCAG
255 GTAGCACTTCCCAA
2481700 TCCTCAAAGAGCAAGA
1 TCCTCAAAGAGCAAGA
2481716 CGCTCTCTCC
Statistics
Matches: 254, Mismatches: 24, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
264 10 0.04
265 194 0.76
267 1 0.00
270 1 0.00
271 48 0.19
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (268 bp):
TCCTCAAAGAGCAAGAGCACTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTCTAGTCCT
CAAAGAGTAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTCAAAGCC
CACACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTT
GGTGGCATTTTCCAGTCCTCAAAGAGCAGGAATTCGCCATTCAAAGCCCACACAAGTTGGTAGCA
CTTCCCAA
Found at i:2481702 original size:61 final size:55
Alignment explanation
Indices: 2481527--2481718 Score: 240
Period size: 55 Copynumber: 3.4 Consensus size: 55
2481517 TTCGCCCTTT
* *
2481527 AGTCCTCAAAGAGCAAGACGCCTTTTAAATCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* * *
2481582 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACATAAGTTGGTGGCGTTTTCT
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * * *
2481637 AGTCCTCAAAGAGCAGGATACTTTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACTTCCC
1 AGTCCTCAAAGAGCA--AGA----CGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
2481698 AGTCCTCAAAGAGCAAGACGC
1 AGTCCTCAAAGAGCAAGACGC
2481719 TCTCTCCTTT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
55 67 0.58
57 2 0.02
59 2 0.02
61 45 0.39
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:2481793 original size:155 final size:155
Alignment explanation
Indices: 2481582--2481867 Score: 475
Period size: 155 Copynumber: 1.8 Consensus size: 155
2481572 GGCATTTTCC
* *
2481582 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACATAAGTTGGTGGCGTTTTCTAGTCCTCAAA
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
* * *
2481647 GAGCAGGATACTTTCTCCTTTCAAAGCCCACACAAGTTGGTAGCA-CTTCCCAGTCCTCAAAGAG
66 GAGCAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTAGTAGCACCTT-CCAGTCCTCAAAGAG
2481711 CAAGACGCTCTCTCCTTTCGCCCTTT
130 CAAGACGCTCTCTCCTTTCGCCCTTT
* * *
2481737 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
*
2481802 GAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTAGTAGCACCTTCCAGTCCTCAAAGAGC
66 GAGCAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTAGTAGCACCTTCCAGTCCTCAAAGAGC
2481867 A
131 A
2481868 GGATGCCTTT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
155 118 0.98
156 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (155 bp):
AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
GAGCAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTAGTAGCACCTTCCAGTCCTCAAAGAGC
AAGACGCTCTCTCCTTTCGCCCTTT
Found at i:2481857 original size:61 final size:60
Alignment explanation
Indices: 2481757--2481945 Score: 229
Period size: 61 Copynumber: 3.1 Consensus size: 60
2481747 GAGCAGGATG
* *
2481757 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACACCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACACCTTCT
* * **
2481818 CCTTTTAAAGCCCACACAAGTTAGTAGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTT-T
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACACCTTCT
* * * *
2481878 TCTTTTCAATGCCCACATAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAAGACA-CTCTCT
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACACCT-TCT
2481940 CCTTTT
1 CCTTTT
2481946 TCCCTTTAGT
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
60 13 0.12
61 89 0.82
62 6 0.06
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (60 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACACCTTCT
Found at i:2481953 original size:216 final size:215
Alignment explanation
Indices: 2481311--2482150 Score: 1121
Period size: 216 Copynumber: 3.9 Consensus size: 215
2481301 ATTGGTGGCA
* *
2481311 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTC
1 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTC
* * * * * ** *
2481376 CTCAAAGAGC-AG-GA---TGCCATTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAA
65 CTCAAAGAGCAAGACACCTTTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCCAGTCCTCAA
* *
2481436 AGAGCAAGATACTTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCGTCAAAGA
130 AGAGCAGGATACTTTCT-CTTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGA
* *
2481500 GTAGGACGCTCTCTCCTTTCGC
194 GCAAGACGCTCTCTCCTTTCGC
* *
2481522 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTTAAATCCCACACAAGTTGGTGGCATTTTCCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCC
* * * *** *
2481587 TCAAAGAGCAAGACGCCTTT-C----AAAGCCCACATAAGTTGGTGGCGTTTTCTAGTCCTCAAA
66 TCAAAGAGCAAGACACCTTTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCCAGTCCTCAAA
* * *
2481647 GAGCAGGATACTTTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGC
131 GAGCAGGATACTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGC
2481712 AAGACGCTCTCTCCTTTCGC
196 AAGACGCTCTCTCCTTTCGC
* *
2481732 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCC
* *
2481797 TCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTAGTAGCACCTTCCAGTCCTCAA
66 TCAAAGAGCAAGACACCTT-TCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCCAGTCCTCAA
* * *
2481862 AGAGCAGGATGCCTTT-TCTTTTCAATGCCCACATAAGTTGGTGGCACTTCCTAGTCCTCAAAGA
130 AGAGCAGGAT-ACTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGA
* **
2481926 GCAAGACACTCTCTCCTTTTTC
194 GCAAGACGCTCTCTCCTTTCGC
2481948 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCC
* * *
2482013 TCAAAAAGCAAGACGCCTTCTCCTTTTAAAGCCCACAAAAGTTGGTAGCACCTTCCAGTCCTCAA
66 TCAAAGAGCAAGACACCTT-TCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCCAGTCCTCAA
* * * ** *
2482078 AGAGCAGGATGCCTTT-TCTTTTCAAAGCCCACTCGAGTTGGTGGCACTTTTTAGTCCTTAAAGA
130 AGAGCAGGAT-ACTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGA
*
2482142 GCAGGACGC
194 GCAAGACGC
2482151 CTTTTCCTTT
Statistics
Matches: 560, Mismatches: 56, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
209 4 0.01
210 251 0.45
211 8 0.01
212 1 0.00
214 1 0.00
215 1 0.00
216 290 0.52
217 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (215 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCC
TCAAAGAGCAAGACACCTTTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCCAGTCCTCAAA
GAGCAGGATACTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGC
AAGACGCTCTCTCCTTTCGC
Found at i:2482047 original size:61 final size:60
Alignment explanation
Indices: 2481953--2482161 Score: 232
Period size: 61 Copynumber: 3.5 Consensus size: 60
2481943 TTTTCCCTTT
2481953 AGTCCTCAAAGAGCAGGACG-----CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * * **
2482008 AGTCCTCAAAAAGCAAGACGCCTTCTCCTTTTAAAGCCCACAAAAGTTGGTAGCACCTTCC
1 AGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * * *
2482069 AGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACTTTT-T
1 AGTCCTCAAAGAGCAGGACGCCTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA-TTTTCC
*
2482130 AGTCCTTAAAGAGCAGGACGCCTTTTCCTTTT
1 AGTCCTCAAAGAGCAGGACGCC-TTTCCTTTT
2482162 CTCTTTTGTC
Statistics
Matches: 125, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
55 18 0.14
60 6 0.05
61 91 0.73
62 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:2484167 original size:20 final size:19
Alignment explanation
Indices: 2484142--2484235 Score: 116
Period size: 20 Copynumber: 4.7 Consensus size: 19
2484132 TTTACCCAGA
2484142 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
2484162 TGTATCGATACATTTCTCAT
1 TGTATCGATACATTT-TCAT
* *
2484182 TGTATCAATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
* *
2484202 TGAATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
2484222 TGTATCGATACATT
1 TGTATCGATACATT
2484236 CAGGCATTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
19 1 0.02
20 62 0.97
21 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:2486890 original size:51 final size:50
Alignment explanation
Indices: 2486800--2486968 Score: 146
Period size: 51 Copynumber: 3.3 Consensus size: 50
2486790 ATTTAATCGA
* *
2486800 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAACTAG
1 GGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTCTCACAA-TAG
* * * *
2486851 GGATACTCCAACTCTGATTTTATTT-TCAAAACACTAATTTCTCACAATCG
1 GGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTCTCACAATAG
* ** * * * *
2486901 GAGATACTCCAA-CCCTAGCCTTATTTCTAAAGCATCGATTT-TCCACAATCGG
1 G-GATACTCCAACCCCGA-TTTTATTTCTAAAACACCAATTTCT-CACAAT-AG
2486953 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
2486969 TTATTTTCGA
Statistics
Matches: 94, Mismatches: 17, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
50 7 0.07
51 81 0.86
52 6 0.06
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (50 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTCTCACAATAG
Found at i:2488269 original size:51 final size:50
Alignment explanation
Indices: 2488188--2488306 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 50
2488178 TATTTCTGAG
* * * *
2488188 GAGATACTCCAACCCTGGTTTTATTTCTAAAACACCGATTTTCCACCATCA
1 GAGATACTCCAACCCTGGCTTTATTACTAAAACACCAATTTTCCACAAT-A
* * *
2488239 GAGATACTCCAACCCTGGCTTTATTACTAAAACATCAATTTTTCACAATT
1 GAGATACTCCAACCCTGGCTTTATTACTAAAACACCAATTTTCCACAATA
2488289 GAGGATACTCCAACCCTG
1 GA-GATACTCCAACCCTG
2488307 TTATTTCTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 2 0.03
51 58 0.97
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (50 bp):
GAGATACTCCAACCCTGGCTTTATTACTAAAACACCAATTTTCCACAATA
Found at i:2488324 original size:130 final size:128
Alignment explanation
Indices: 2488025--2488435 Score: 384
Period size: 131 Copynumber: 3.1 Consensus size: 128
2488015 CCAGCATCAG
* * * *
2488025 GGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAATCCTGGTTTGATTTTTAGAACATCGA
1 GGATACTCCAA-CCCGTTATTTCTGAAGGGATACTCCAACCCTGGTTTTATTTTTAAAACACCGA
* * * *
2488090 TTTTACATAATCA-AGGATACTCCAACCCCGTCCTCGGTTTTATTTTCAAAACATCAATCTTTCA
65 TTTTACA-CATCAGAGGATACTCCAA---C--CCT-GGCTTTATTCT-AAAACATCAATTTTTCA
*
2488154 CAATCGG
122 CAATCGA
* * *
2488161 GGATGCTCCAATCCCATTATTTCTG-AGGAGATACTCCAACCCTGGTTTTATTTCTAAAACACCG
1 GGATACTCCAA-CCCGTTATTTCTGAAGG-GATACTCCAACCCTGGTTTTATTTTTAAAACACCG
* *
2488225 ATTTTCCACCATCAGA-GATACTCCAACCCTGGCTTTATTACTAAAACATCAATTTTTCACAATT
64 ATTTTACA-CATCAGAGGATACTCCAACCCTGGCTTTATT-CTAAAACATCAATTTTTCACAATC
2488289 GA
127 GA
*** *
2488291 GGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAACCCCAATTTTTATTTTTAAGACACC-
1 GGATACTCCAACCC-GTTATTTCTGAAGGGATACTCCAA-CCCTGGTTTTATTTTTAAAACACCG
* ** * * *
2488355 ATTTTTTCACACTC-GAGGATACTCCAACCC-GTGCTTTATTTCTAAAATGTTAATTTTCCATAA
64 A-TTTTACACA-TCAGAGGATACTCCAACCCTG-GCTTTA-TTCTAAAACATCAATTTTTCACAA
*
2488418 TCGT
125 TCGA
2488422 GGATACTCCAACCC
1 GGATACTCCAACCC
2488436 CGACTTTATT
Statistics
Matches: 233, Mismatches: 31, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
129 3 0.01
130 64 0.27
131 86 0.37
132 2 0.01
133 1 0.00
135 3 0.01
136 73 0.31
137 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (128 bp):
GGATACTCCAACCCGTTATTTCTGAAGGGATACTCCAACCCTGGTTTTATTTTTAAAACACCGAT
TTTACACATCAGAGGATACTCCAACCCTGGCTTTATTCTAAAACATCAATTTTTCACAATCGA
Found at i:2488401 original size:182 final size:180
Alignment explanation
Indices: 2488190--2488522 Score: 438
Period size: 182 Copynumber: 1.8 Consensus size: 180
2488180 TTTCTGAGGA
* * *
2488190 GATACTCCAACCCTGGTTTTATTTCTAAAACACCGATTTTCCACCATCAG-AGATACTCCAACCC
1 GATACTCCAACCCTGGCTTTATTTCTAAAACACCAATTTTCCACAATC-GTAGATACTCCAACCC
* * * *
2488254 TGGCTTTATTACTAAAACATCAATTTTTCACAATTGAGGATACTCCAACCCTGTTATT-TCTGAA
65 CGACTTTATTACTAAAACATCAATTTTCCACAA-TGAGGATACTCCAACCCCGTTATTCTCT-AA
2488318 GGGATACTCCAACCCCAATTTTTATTTTTAAGACACCATTTTTTCACACTCGAG
128 GGGATACTCCAACCCC-ATTTTTATTTTTAAGACACCATTTTTTCACACTCGAG
**** * *
2488372 GATACTCCAACCC-GTGCTTTATTTCTAAAATGTTAATTTTCCATAATCGTGGATACTCCAACCC
1 GATACTCCAACCCTG-GCTTTATTTCTAAAACACCAATTTTCCACAATCGTAGATACTCCAACCC
* * * *
2488436 CGACTTTATTCCTAAAACATCAATTTTCCATAATGGGGATACTCTAACCCCGTTATTCTCTAAGG
65 CGACTTTATTACTAAAACATCAATTTTCCACAATGAGGATACTCCAACCCCGTTATTCTCTAAGG
*
2488501 GATACTCTAACCCCATTTTTAT
130 GATACTCCAACCCCATTTTTAT
2488523 CTCCAAAATA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
180 8 0.06
181 40 0.31
182 82 0.63
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (180 bp):
GATACTCCAACCCTGGCTTTATTTCTAAAACACCAATTTTCCACAATCGTAGATACTCCAACCCC
GACTTTATTACTAAAACATCAATTTTCCACAATGAGGATACTCCAACCCCGTTATTCTCTAAGGG
ATACTCCAACCCCATTTTTATTTTTAAGACACCATTTTTTCACACTCGAG
Found at i:2488429 original size:51 final size:49
Alignment explanation
Indices: 2488371--2488485 Score: 140
Period size: 51 Copynumber: 2.3 Consensus size: 49
2488361 TCACACTCGA
* * ** * *
2488371 GGATACTCCAACCCGTGCTTTATTTCTAAAATGTTAATTTTCCATAATCGT
1 GGATACTCCAACCCG-ACTTTATTCCTAAAACATCAATTTTCCATAAT-GG
2488422 GGATACTCCAACCCCGACTTTATTCCTAAAACATCAATTTTCCATAATGG
1 GGATACTCCAA-CCCGACTTTATTCCTAAAACATCAATTTTCCATAATGG
*
2488472 GGATACTCTAACCC
1 GGATACTCCAACCC
2488486 CGTTATTCTC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
49 3 0.05
50 11 0.20
51 38 0.68
52 4 0.07
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (49 bp):
GGATACTCCAACCCGACTTTATTCCTAAAACATCAATTTTCCATAATGG
Found at i:2490458 original size:4 final size:4
Alignment explanation
Indices: 2490449--2490483 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
2490439 TATTAAGGTG
* *
2490449 TTTA TTTA TTTA TTCA TTCA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
2490484 TGTTTTGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:2493320 original size:20 final size:20
Alignment explanation
Indices: 2493278--2493330 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
2493268 CACACCTAGA
* * **
2493278 TGTATTGATACATTATGCTT
1 TGTATCGATACATGATGAAT
2493298 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAT
*
2493318 TGTATCGAAACAT
1 TGTATCGATACAT
2493331 TGCTTGTAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATGATGAAT
Found at i:2500867 original size:15 final size:17
Alignment explanation
Indices: 2500849--2500880 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2500839 TGTTCATCAA
2500849 CTTC-TTTTGGA-GCTT
1 CTTCATTTTGGACGCTT
2500864 CTTCATTTTGGACGCTT
1 CTTCATTTTGGACGCTT
2500881 TCATCTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 7 0.47
17 4 0.27
ACGTcount: A:0.09, C:0.22, G:0.19, T:0.50
Consensus pattern (17 bp):
CTTCATTTTGGACGCTT
Found at i:2504956 original size:20 final size:21
Alignment explanation
Indices: 2504931--2504984 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
2504921 GTTACAAGCA
*
2504931 ATGTATCGATACAATT-CATC
1 ATGTATCGATACAATTGCACC
*
2504951 ATGTATCGATAC-ATTGTACC
1 ATGTATCGATACAATTGCACC
2504971 ATGTATCGATACAA
1 ATGTATCGATACAA
2504985 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 26 0.87
21 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACAATTGCACC
Found at i:2509237 original size:13 final size:13
Alignment explanation
Indices: 2509219--2509245 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2509209 ACAACATTCC
2509219 TTGTATCGATACA
1 TTGTATCGATACA
2509232 TTGTATCGATACA
1 TTGTATCGATACA
2509245 T
1 T
2509246 AGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2511598 original size:21 final size:22
Alignment explanation
Indices: 2511558--2511598 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
2511548 TTTTTTAAGA
*
2511558 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGGGGAAGAAATGC
*
2511580 TTTGATAAA-GGGAAGAAAT
1 TTTGACAAAGGGGAAGAAAT
2511599 ATGTTTATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.05, G:0.32, T:0.22
Consensus pattern (22 bp):
TTTGACAAAGGGGAAGAAATGC
Found at i:2520821 original size:13 final size:13
Alignment explanation
Indices: 2520799--2520833 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
2520789 TTTTTTTCAA
2520799 AAAAAT-AAAATT
1 AAAAATAAAAATT
2520811 AAAAATAAAAATT
1 AAAAATAAAAATT
2520824 AAAAA-AAAAA
1 AAAAATAAAAA
2520834 GAAAAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAATAAAAATT
Found at i:2520833 original size:12 final size:12
Alignment explanation
Indices: 2520798--2520833 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
2520788 CTTTTTTTCA
2520798 AAAAAATAAAATT
1 AAAAAA-AAAATT
2520811 AAAAATAAAAATT
1 AAAAA-AAAAATT
2520824 AAAAAAAAAA
1 AAAAAAAAAA
2520834 GAAAAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.23
13 16 0.73
14 1 0.05
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAAAAAAATT
Found at i:2522693 original size:80 final size:79
Alignment explanation
Indices: 2522486--2522705 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 79
2522476 TACTGATTTC
* * * *
2522486 CCACCATCGAGGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTTC
1 CCACAATCAAGGATACTCCAACCCCATTATTTCTGAGGGGATACTCTAACCCCGGTTTTATTTTC
* *
2522551 AGAACACCAATTTT
66 AAAACACCAATCTT
* * * * *
2522565 CCATAATCAAGGATACTCCAACCCCATTATTTTTAAAGGGATACTCTAACCTCGGTTTTATTTTC
1 CCACAATCAAGGATACTCCAACCCCATTATTTCTGAGGGGATACTCTAACCCCGGTTTTATTTTC
2522630 AAAACACCAATCTT
66 AAAACACCAATCTT
** * * * *
2522644 CCACAATCGGGGGATACTCTAACCCCTTTATTTCTGAGGGGATATTCTAACCCCAGTTTTAT
1 CCACAATC-AAGGATACTCCAACCCCATTATTTCTGAGGGGATACTCTAACCCCGGTTTTAT
2522706 CGGTTTTATT
Statistics
Matches: 118, Mismatches: 22, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
79 75 0.64
80 43 0.36
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (79 bp):
CCACAATCAAGGATACTCCAACCCCATTATTTCTGAGGGGATACTCTAACCCCGGTTTTATTTTC
AAAACACCAATCTT
Found at i:2523184 original size:23 final size:22
Alignment explanation
Indices: 2523153--2523201 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
2523143 TCGTCCCTCT
**
2523153 TTTTATGTATTTTTGTGTGTCTA
1 TTTTATGTAAATTTGTGTGT-TA
* *
2523176 TTTTGTGTAAATTTGTTTGTTA
1 TTTTATGTAAATTTGTGTGTTA
2523198 TTTT
1 TTTT
2523202 CTTTATAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.14, C:0.02, G:0.16, T:0.67
Consensus pattern (22 bp):
TTTTATGTAAATTTGTGTGTTA
Found at i:2524806 original size:130 final size:130
Alignment explanation
Indices: 2524571--2524804 Score: 389
Period size: 130 Copynumber: 1.8 Consensus size: 130
2524561 AATTATTTCT
* * *
2524571 AAAAAATAATTTCGTACCTTAATGGATACCCGAAAAGATACGAAAAGTTTTTTGAAATCTTTTAT
1 AAAAAATAATTTCGTACCTTAATGGATACCCGAAAAGATACAAAAAGTTTTTTAAAATCTTTCAT
* * *
2524636 ACCCCTATGGATACCCATAGGAATATAAAAGACTTGAAAATAATTGATATTTATTTATGTTTGGA
66 ACCCCTATAGATACCCATAAGAATATAAAAGACTTAAAAATAATTGATATTTATTTATGTTTGGA
* *
2524701 AAAAAATCATTTTGTACCTTAATGGATACCCGAAAAGATACAAAAAGTTTTTTAAAATCTTTCAT
1 AAAAAATAATTTCGTACCTTAATGGATACCCGAAAAGATACAAAAAGTTTTTTAAAATCTTTCAT
2524766 ACCCCTATAGATACCCATAAGAATATAAAAGA-TTAAAAA
66 ACCCCTATAGATACCCATAAGAATATAAAAGACTTAAAAA
2524805 ATGATTAATG
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 6 0.06
130 90 0.94
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.32
Consensus pattern (130 bp):
AAAAAATAATTTCGTACCTTAATGGATACCCGAAAAGATACAAAAAGTTTTTTAAAATCTTTCAT
ACCCCTATAGATACCCATAAGAATATAAAAGACTTAAAAATAATTGATATTTATTTATGTTTGGA
Found at i:2524974 original size:183 final size:178
Alignment explanation
Indices: 2524667--2525160 Score: 622
Period size: 183 Copynumber: 2.8 Consensus size: 178
2524657 AATATAAAAG
*
2524667 ACTTGAAAATAATTGATATTTATTTATGTTTGG-AAAAAAATCATTTTGTACCTTAATGGATACC
1 ACTTGAAAATAATTGATATTTATTTA-GTTTGGAAAAAAAATCATTTCGTACCTTAATGGATACC
* *
2524731 CGAAAAGATACAAAAAGTTTTTTAAAATCTTTCATACCCCTATAGATACCCATAAGAATATAAAA
65 CGAAAAGATACAAAAAG-TTTTTAAAATCTTTTATACCCCTACAGATACCCATAAGAATATAAAA
*
2524796 GATTAAAAAATGATTAATGTTTGTTGTAATTAACAAGGAGTGAATTTAATATT
129 GATTAAAAAATGATTAATGTTTGTTGTAATTAACAAGGAGTGAACTT-A-A-T
* *
2524849 ACTTGAAAATAATTGATATTTATTTAAGTTTGGAAAAAAAATCATTTCATACCTTAATGAATACC
1 ACTTGAAAATAATTGATATTTATTT-AGTTTGGAAAAAAAATCATTTCGTACCTTAATGGATACC
* *
2524914 CGAAAAGATACAAAAAGTTTTTAAAAATCTTTTATACCCCTACGGATACCCATAAGAATATTAAA
65 CGAAAAGATACAAAAAGTTTTT-AAAATCTTTTATACCCCTACAGATACCCATAAGAATATAAAA
* ** *
2524979 TATTAAAAAATGATTAATGTTTGTTGTAATTAATGATGAGTGAACTTAAT
129 GATTAAAAAATGATTAATGTTTGTTGTAATTAACAAGGAGTGAACTTAAT
* *
2525029 A--T-----T-ATT--TATTTATTT--TTT--AAAAAAAATAATTTCGTACCTTAATGGATACCA
1 ACTTGAAAATAATTGATATTTATTTAGTTTGGAAAAAAAATCATTTCGTACCTTAATGGATACCC
* * * * * *
2525080 AAAAAGATACGAAAAGTTTTTGAAATCTTTTATACCCCTACAGATACTCATAGGAAAATAAAAGA
66 GAAAAGATACAAAAAGTTTTTAAAATCTTTTATACCCCTACAGATACCCATAAGAATATAAAAGA
* *
2525145 TTTAAAAATTATTAAT
131 TTAAAAAATGATTAAT
2525161 ATTAAAATAT
Statistics
Matches: 282, Mismatches: 27, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
164 51 0.18
165 48 0.17
167 3 0.01
170 9 0.03
172 3 0.01
173 1 0.00
178 1 0.00
180 2 0.01
181 1 0.00
182 37 0.13
183 126 0.45
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (178 bp):
ACTTGAAAATAATTGATATTTATTTAGTTTGGAAAAAAAATCATTTCGTACCTTAATGGATACCC
GAAAAGATACAAAAAGTTTTTAAAATCTTTTATACCCCTACAGATACCCATAAGAATATAAAAGA
TTAAAAAATGATTAATGTTTGTTGTAATTAACAAGGAGTGAACTTAAT
Found at i:2526519 original size:13 final size:13
Alignment explanation
Indices: 2526501--2526525 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2526491 ACTTTGCTTA
2526501 GTATCGATACATT
1 GTATCGATACATT
2526514 GTATCGATACAT
1 GTATCGATACAT
2526526 AAAACTAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2529355 original size:129 final size:129
Alignment explanation
Indices: 2528966--2529851 Score: 550
Period size: 129 Copynumber: 6.9 Consensus size: 129
2528956 GATGAAAAAA
* * * * * * * * *
2528966 GAAGTCT-TCGAGTCTAAGCAGACGGGCAGACGAAT-GATGAA-AAAGTCTCCCGGGTCTAAACC
1 GAAGTCTCTCGGGTCTGAGCTGATGGGCAGACG-ATCGATGAAGGAAGTCTCCTGAGTCTGAGCC
* ** * * * ** *
2529028 GATAGGCAGACAAAAGATG-AAGAAAGTCTCCCGGGTCTAGGTCGACAGGCAGACGATCAATGAA
65 GATGGGCAGACAATTGATGAAAG-AAGTCTCTCGGGTCTAAGCCGATGGGCAAACGATCAATGAA
2529092 G
129 G
* * * **** * *
2529093 GAAGCCTC-CTTGGTCTGATCTGACAAACAGACGATCGATGAAGGAAGTCT-TTCGGGTCTGAGC
1 GAAGTCTCTC-GGGTCTGAGCTGATGGGCAGACGATCGATGAAGGAAGTCTCCT-GAGTCTGAGC
* * ** * * * * * *
2529156 CGACGGGCAAATGATAGATGAAGGAAGTCTCCCGGGTTTGAGCCGATGGGCAAACGATCGATGAA
64 CGATGGGCAGACAATTGATGAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAAACGATCAATGAA
2529221 G
129 G
** * *
2529222 GAAGTCTCTTAGGTCTGAGCTGATGGACAGACGAAT-GATGAAGGAAGTTTCCTGAGTCTGAGCC
1 GAAGTCTCTCGGGTCTGAGCTGATGGGCAGACG-ATCGATGAAGGAAGTCTCCTGAGTCTGAGCC
* * * *
2529286 GATGGGCAGACAATTGATGAAAGAAGTATCTCGGGTGTAAGCCGATGGGCAAACAATTAATGAAG
65 GATGGGCAGACAATTGATGAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAAACGATCAATGAAG
* * * * * * *
2529351 GAAGTCTCCCGGGTCTAAG-TCGATGGGCATACGATTGATGAATGATGTCTCCTGAGTTTGAGCC
1 GAAGTCTCTCGGGTCTGAGCT-GATGGGCAGACGATCGATGAAGGAAGTCTCCTGAGTCTGAGCC
* * * * * **
2529415 GATGGGCAAACGAA-TGATG-AAGAAGTCTCTTGAGTCTAAACCGATGGGCAGAC-AAAAGATGA
65 GATGGGCAGAC-AATTGATGAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAAACGATCA-ATGA
2529477 AG
128 AG
* * * * * * * *
2529479 AAAGT-TCTCGGGTCTG-GGTCGACGGGTAGACGATCAATGAAGGAAGCCT-CTCAGGTTTGAGC
1 GAAGTCTCTCGGGTCTGAGCT-GATGGGCAGACGATCGATGAAGGAAGTCTCCTGA-GTCTGAGC
* * * * * *** * * *
2529541 CGACGGGCAGACAATCGATGAAGGAAGCCTC-CTGGGTCTGAGCCGACAAGTAGACGATCGATGA
64 CGATGGGCAGACAATTGATGAAAGAAGTCTCTC-GGGTCTAAGCCGATGGGCAAACGATCAATGA
2529605 AG
128 AG
* * * * *
2529607 GAAGTCT-TCCGAGTCTGAACCGATGGGCAAACGATCGATGAAGGAAGTCTCCCGAGTCTGAGCC
1 GAAGTCTCT-CGGGTCTGAGCTGATGGGCAGACGATCGATGAAGGAAGTCTCCTGAGTCTGAGCC
* * * * * * * **
2529671 AATGGGCAGACGATCGATGAAGGAAGTCTGTCGGGTCTGAGCCGATGGGCAGACGATTGATG-AG
65 GATGGGCAGACAATTGATGAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAAACGATCAATGAAG
* * * * * * * * * *
2529735 AGAAGTCTCCCGGGTCTGAGCCGATGGGTAGATGATTGATGAATGATGTTTCCTAAGTCTGAGTC
1 -GAAGTCTCTCGGGTCTGAGCTGATGGGCAGACGATCGATGAAGGAAGTCTCCTGAGTCTGAGCC
* ** * *
2529800 GACT-GGTAGATGATTGAT-AAAGGAGTCTCTTGGGTCTAAGCCGATGGGCAAA
65 GA-TGGGCAGACAATTGATGAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAAA
2529852 TGAATGTCTT
Statistics
Matches: 587, Mismatches: 145, Indels: 53
0.75 0.18 0.07
Matches are distributed among these distances:
126 6 0.01
127 65 0.11
128 126 0.21
129 379 0.65
130 11 0.02
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.21
Consensus pattern (129 bp):
GAAGTCTCTCGGGTCTGAGCTGATGGGCAGACGATCGATGAAGGAAGTCTCCTGAGTCTGAGCCG
ATGGGCAGACAATTGATGAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAAACGATCAATGAAG
Found at i:2529759 original size:43 final size:43
Alignment explanation
Indices: 2528989--2529777 Score: 604
Period size: 43 Copynumber: 18.4 Consensus size: 43
2528979 CTAAGCAGAC
* * *
2528989 GGGCAGACGAAT-GATGAA-AAAGTCTCCCGGGTCTAAACCGAT
1 GGGCAGACG-ATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * ** * * *
2529031 AGGCAGACAAAAGATGAAGAAAGTCTCCCGGGTCT-AGGTCGAC
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGA-GCCGAT
* * * ** * * *
2529074 AGGCAGACGATCAATGAAGGAAGCCTCCTTGGTCTGATCTGAC
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
*** ** *
2529117 AAACAGACGATCGATGAAGGAAGTCTTTCGGGTCTGAGCCGAC
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * * *
2529160 GGGCAAATGATAGATGAAGGAAGTCTCCCGGGTTTGAGCCGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* *** *
2529203 GGGCAAACGATCGATGAAGGAAGTCTCTTAGGTCTGAGCTGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * * *
2529246 GGACAGACGAAT-GATGAAGGAAGTTTCCTGAGTCTGAGCCGAT
1 GGGCAGACG-ATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * * * * * *
2529289 GGGCAGACAATTGATGAAAGAAGTATCTCGGGTGTAAGCCGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * ** * *
2529332 GGGCAAACAATTAATGAAGGAAGTCTCCCGGGTCTAAGTCGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * * * * * *
2529375 GGGCATACGATTGATGAATGATGTCTCCTGAGTTTGAGCCGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* ** * * *
2529418 GGGCAAACGAAT-GATGAA-GAAGTCTCTTGAGTCTAAACCGAT
1 GGGCAGACG-ATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* ** * * * * *
2529460 GGGCAGACAAAAGATGAAGAAAGT-TCTCGGGTCTGGGTCGAC
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * * * * * *
2529502 GGGTAGACGATCAATGAAGGAAGCCTCTCAGGTTTGAGCCGAC
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * * *
2529545 GGGCAGACAATCGATGAAGGAAGCCTCCTGGGTCTGAGCCGAC
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
** * * * *
2529588 AAGTAGACGATCGATGAAGGAAGTCTTCCGAGTCTGAACCGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
* * *
2529631 GGGCAAACGATCGATGAAGGAAGTCTCCCGAGTCTGAGCCAAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
**
2529674 GGGCAGACGATCGATGAAGGAAGTCTGTCGGGTCTGAGCCGAT
1 GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
*
2529717 GGGCAGACGATTGATG-AGAGAAGTCTCCCGGGTCTGAGCCGAT
1 GGGCAGACGATCGATGAAG-GAAGTCTCCCGGGTCTGAGCCGAT
* * *
2529760 GGGTAGATGATTGATGAA
1 GGGCAGACGATCGATGAA
2529778 TGATGTTTCC
Statistics
Matches: 596, Mismatches: 139, Indels: 22
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.00
42 78 0.13
43 510 0.86
44 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.32, T:0.20
Consensus pattern (43 bp):
GGGCAGACGATCGATGAAGGAAGTCTCCCGGGTCTGAGCCGAT
Found at i:2529795 original size:43 final size:43
Alignment explanation
Indices: 2529576--2529817 Score: 143
Period size: 43 Copynumber: 5.6 Consensus size: 43
2529566 AGCCTCCTGG
*** * * * *
2529576 GTCTGAGCCGACAAGTAGACGATCGATGA-AGGAAGTCTTCCGA
1 GTCTGAGCCGATGGGTAGATGATTGATGAGA-GAAGTCTCCCAA
* * * * * *
2529619 GTCTGAACCGATGGGCAAACGATCGATGA-AGGAAGTCTCCCGA
1 GTCTGAGCCGATGGGTAGATGATTGATGAGA-GAAGTCTCCCAA
* * * * ** **
2529662 GTCTGAGCCAATGGGCAGACGATCGATGA-AGGAAGTCTGTCGG
1 GTCTGAGCCGATGGGTAGATGATTGATGAGA-GAAGTCTCCCAA
* * **
2529705 GTCTGAGCCGATGGGCAGACGATTGATGAGAGAAGTCTCCCGG
1 GTCTGAGCCGATGGGTAGATGATTGATGAGAGAAGTCTCCCAA
* * *
2529748 GTCTGAGCCGATGGGTAGATGATTGATGA-ATGATGTTTCCTAA
1 GTCTGAGCCGATGGGTAGATGATTGATGAGA-GAAGTCTCCCAA
*
2529791 GTCTGAGTCGACT-GGTAGATGATTGAT
1 GTCTGAGCCGA-TGGGTAGATGATTGAT
2529818 AAAGGAGTCT
Statistics
Matches: 171, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.01
43 168 0.98
44 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.22
Consensus pattern (43 bp):
GTCTGAGCCGATGGGTAGATGATTGATGAGAGAAGTCTCCCAA
Found at i:2529795 original size:86 final size:86
Alignment explanation
Indices: 2528966--2529849 Score: 590
Period size: 86 Copynumber: 10.3 Consensus size: 86
2528956 GATGAAAAAA
* * * * * * * * * *
2528966 GAAGTCT-TCGAGTCTAAGCAGACGGGCAGACGAATGATGAA-AAAGTCTCCCGGGTCTAAACCG
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCCG
* * **
2529029 ATAGGCAGACAAAAGATGAAG
66 ATGGGCAGACGATCGATGAAG
* * * ** ** * *
2529050 AAAGTCTCCCGGGTCT-AGGTCGACAGGCAGACGATCAATGAAGGAAGCCTCCTTG-GTCTGATC
1 GAAGTCTCTCGGGTCTGA-GCCGATGGGCAGACGATTGATGAAGGAAGTCTCC-TGAGTCTGAGC
* ****
2529113 TGACAAACAGACGATCGATGAAG
64 CGATGGGCAGACGATCGATGAAG
* * * * * * * *
2529136 GAAGTCTTTCGGGTCTGAGCCGACGGGCAAATGATAGATGAAGGAAGTCTCCCGGGTTTGAGCCG
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCCG
*
2529201 ATGGGCAAACGATCGATGAAG
66 ATGGGCAGACGATCGATGAAG
** * * * *
2529222 GAAGTCTCTTAGGTCTGAGCTGATGGACAGACGAATGATGAAGGAAGTTTCCTGAGTCTGAGCCG
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCCG
* * *
2529287 ATGGGCAGACAATTGATGAAA
66 ATGGGCAGACGATCGATGAAG
* * * * * * * * * *
2529308 GAAGTATCTCGGGTGTAAGCCGATGGGCAAACAATTAATGAAGGAAGTCTCCCGGGTCTAAGTCG
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCCG
* * *
2529373 ATGGGCATACGATTGATGAAT
66 ATGGGCAGACGATCGATGAAG
* * * * * * * *
2529394 GATGTCTC-CTGAGTTTGAGCCGATGGGCAAACGAATGATGAA-GAAGTCTCTTGAGTCTAAACC
1 GAAGTCTCTC-GGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCC
* **
2529457 GATGGGCAGACAAAAGATGAAG
65 GATGGGCAGACGATCGATGAAG
* * * * * ** * * *
2529479 AAAGT-TCTCGGGTCTGGGTCGACGGGTAGACGATCAATGAAGGAAGCCT-CTCAGGTTTGAGCC
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGA-GTCTGAGCC
* *
2529542 GACGGGCAGACAATCGATGAAG
65 GATGGGCAGACGATCGATGAAG
* *** * * *
2529564 GAAGCCTC-CTGGGTCTGAGCCGACAAGTAGACGATCGATGAAGGAAGTCTTCC-GAGTCTGAAC
1 GAAGTCTCTC-GGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTC-TCCTGAGTCTGAGC
*
2529627 CGATGGGCAAACGATCGATGAAG
64 CGATGGGCAGACGATCGATGAAG
* * * * * *
2529650 GAAGTCTCCCGAGTCTGAGCCAATGGGCAGACGATCGATGAAGGAAGTCT-GTCGGGTCTGAGCC
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCT-GAGTCTGAGCC
*
2529714 GATGGGCAGACGATTGATG-AG
65 GATGGGCAGACGATCGATGAAG
* * * * * * * *
2529735 AGAAGTCTCCCGGGTCTGAGCCGATGGGTAGATGATTGATGAATGATGTTTCCTAAGTCTGAGTC
1 -GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCC
* * * *
2529800 GACT-GGTAGATGATTGATAAAG
65 GA-TGGGCAGACGATCGATGAAG
* *
2529822 G-AGTCTCTTGGGTCTAAGCCGATGGGCA
1 GAAGTCTCTCGGGTCTGAGCCGATGGGCA
2529850 AATGAATGTC
Statistics
Matches: 618, Mismatches: 161, Indels: 41
0.75 0.20 0.05
Matches are distributed among these distances:
84 33 0.05
85 124 0.20
86 451 0.73
87 9 0.01
88 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.21
Consensus pattern (86 bp):
GAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATTGATGAAGGAAGTCTCCTGAGTCTGAGCCG
ATGGGCAGACGATCGATGAAG
Found at i:2530809 original size:170 final size:170
Alignment explanation
Indices: 2530498--2530818 Score: 412
Period size: 170 Copynumber: 1.9 Consensus size: 170
2530488 ACATCACGTA
* * * * *
2530498 AATCCTTTTATCCTTTGTTGACTTGTTAGTTTAATCTCGGTCAACCTTTTTATCCTTTGTTTACC
1 AATCCTTTTATCCTTTATTGACTTGTCAGTTCAATCCCGATCAACCTTTTTATCCTTTGTTTACC
* * *
2530563 TATCGACCTAGTCCCAAGTAAATCCTTTTATCCTTTGTCGACTTGTCAGTTTAACCCTATTCAGC
66 TATCGACCTAGTCCCAAGTAAATCCTTTTATCCTTTGTCGACTTGTCAGTTCAACCCTAGTCAAC
*
2530628 TTTTTTGTCCTTTGTTTACCTATCAGCTTCGCCTTGGGTG
131 TTTTGTGTCCTTTGTTTACCTATCAGCTTCGCCTTGGGTG
* * *
2530668 AATCTTTTTGTCCTTTATTGACTTGTCGGTTCAATCCCGATCAACCTTTTTAT-CTTCTGTTTAC
1 AATCCTTTTATCCTTTATTGACTTGTCAGTTCAATCCCGATCAACCTTTTTATCCTT-TGTTTAC
* * * * * * * * * *
2530732 TTGTTGGCTTAGT-CCTAGATAAATCCTTTTATCCTTTGTTGACTTTTCAGTTCAATCTTAGTCA
65 CTATCGACCTAGTCCCAAG-TAAATCCTTTTATCCTTTGTCGACTTGTCAGTTCAACCCTAGTCA
2530796 ACTTTTGTGTCCTTTGTTTACCT
129 ACTTTTGTGTCCTTTGTTTACCT
2530819 GTCGGCTTAG
Statistics
Matches: 127, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
169 7 0.06
170 120 0.94
ACGTcount: A:0.17, C:0.23, G:0.13, T:0.47
Consensus pattern (170 bp):
AATCCTTTTATCCTTTATTGACTTGTCAGTTCAATCCCGATCAACCTTTTTATCCTTTGTTTACC
TATCGACCTAGTCCCAAGTAAATCCTTTTATCCTTTGTCGACTTGTCAGTTCAACCCTAGTCAAC
TTTTGTGTCCTTTGTTTACCTATCAGCTTCGCCTTGGGTG
Found at i:2530855 original size:85 final size:85
Alignment explanation
Indices: 2530495--2530859 Score: 308
Period size: 85 Copynumber: 4.3 Consensus size: 85
2530485 GCGACATCAC
* * *
2530495 GTAAATCCTTTTATCCTTTGTTGACTTGTTAGTTTAATCTCGGTCAACCTTTTTATCCTTTGTTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTCAGTCAACCTTTTTATCCTTTGTTT
* * * *
2530560 ACCTATCGACCTAGTCCCAA
66 ACCTATCGGCTTAGTCTCAG
* * * * * * *
2530580 GTAAATCCTTTTATCCTTTGTCGACTTGTCAGTTTAA-CCCTATTCAGCTTTTTTGTCCTTTGTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTC-AGTCAACCTTTTTATCCTTTGTT
* * * **
2530644 TACCTATCAGCTTCGCCTTGG
65 TACCTATCGGCTTAGTCTCAG
* * * * * *
2530665 GTGAATCTTTTTGTCCTTTATTGACTTGTCGGTTCAATC-CCGATCAACCTTTTTAT-CTTCTGT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTCAG-TCAACCTTTTTATCCTT-TGT
* * *
2530728 TTACTTGTTGGCTTAGTC-CTAG
64 TTACCTATCGGCTTAGTCTC-AG
* * * *
2530750 ATAAATCCTTTTATCCTTTGTTGACTTTTCAGTTCAATCTTAGTCAA-CTTTTGTGTCCTTTGTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTCAGTCAACCTTTT-TATCCTTTGTT
* *
2530814 TACCTGTCGGCTTAGTCTCGG
65 TACCTATCGGCTTAGTCTCAG
* * * *
2530835 GTAACTCTTTTTCTCTTTTGTTGAC
1 GTAAATCCTTTTATCCTTTGTTGAC
2530860 CAAACTGCTT
Statistics
Matches: 216, Mismatches: 55, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
84 10 0.05
85 200 0.93
86 6 0.03
ACGTcount: A:0.16, C:0.22, G:0.14, T:0.47
Consensus pattern (85 bp):
GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTCAGTCAACCTTTTTATCCTTTGTTT
ACCTATCGGCTTAGTCTCAG
Found at i:2536612 original size:154 final size:153
Alignment explanation
Indices: 2536429--2536882 Score: 374
Period size: 153 Copynumber: 3.0 Consensus size: 153
2536419 GTCTTTTTTC
* *
2536429 TTTTTTTGATTTT-AAAATA-CGAGCCTTTCTTTA-TCTGTAAAAGTTTTGA-TGGAATTT-TCT
1 TTTTTTT-ATTTTCAAAATATAGAG-TTTTC-TTACTCTGTAAAAGTTTTGATTGG-ATTTCTC-
* ** * * *
2536489 TGAATTTTAAA-CTTTGAAATTCTTTAAATATT-CTCCTTAAATCACCATAAAATCAGTTTTAAA
61 TCAATTCAAAATCTTTAAAATTCATCAAATATTACTCCTTAAATCA-CATAAAATCAGTTTTAAA
*
2536552 AAATTCAATTTGTTTTATGAGTTTTAGAT
125 AAATTCAATTTGTTTTATGAGTTTTAGAA
* * * **
2536581 TTTTTTTCTGTTTCCAAAATATGGAGTTTTC-TACTTTGTAAATTTTTTGATTGGATTTCTCTCA
1 TTTTTTTAT-TTT-CAAAATATAGAGTTTTCTTACTCTGTAAAAGTTTTGATTGGATTTCTCTCA
* * * ** * ** * *
2536645 GTTCAAAATTTTTAAAATTCATCAAATATTATTGTTTAATTCATGTTAAATCAGTTTTGAAAAAT
64 ATTCAAAATCTTTAAAATTCATCAAATATTACTCCTTAAATCACATAAAATCAGTTTTAAAAAAT
2536710 TCAATTTGTTTTATGAGTTTTAGAA
129 TCAATTTGTTTTATGAGTTTTAGAA
** * *
2536735 TTTTTTTATTTTCAAAATATAGAGTTTTC-TACT-TCGTAAATTTTTTTGGTTGGATTTTTCTCA
1 TTTTTTTATTTTCAAAATATAGAGTTTTCTTACTCT-GTAAA-AGTTTTGATTGGATTTCTCTCA
* ** * * * * *
2536798 ATTCGAAA-CTTTTAAAATTCATGTAATATT-GTCATTAAATTCACATTAAATTAGTTTTACAAA
64 ATTCAAAATC-TTTAAAATTCATCAAATATTACTCCTTAAA-TCACATAAAATCAGTTTTAAAAA
* *
2536861 ATTCAATTTATTTTATAAGTTT
127 ATTCAATTTGTTTTATGAGTTT
2536883 CAAACTTTTT
Statistics
Matches: 246, Mismatches: 43, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
151 2 0.01
152 42 0.17
153 109 0.44
154 82 0.33
155 11 0.04
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (153 bp):
TTTTTTTATTTTCAAAATATAGAGTTTTCTTACTCTGTAAAAGTTTTGATTGGATTTCTCTCAAT
TCAAAATCTTTAAAATTCATCAAATATTACTCCTTAAATCACATAAAATCAGTTTTAAAAAATTC
AATTTGTTTTATGAGTTTTAGAA
Found at i:2536847 original size:153 final size:153
Alignment explanation
Indices: 2536497--2536882 Score: 465
Period size: 153 Copynumber: 2.5 Consensus size: 153
2536487 CTTGAATTTT
* * * * * *
2536497 AAAC-TTTGAAATTCTTTAAATATTCTCCTTAAA-TCACCATAAAATCAGTTTTAAAAAATTCAA
1 AAACTTTTAAAATTCATCAAATATTATCATTAAATTCA-CATTAAATCAGTTTT-AAAAATTCAA
* * * *
2536560 TTTGTTTTATGAGTTTTAGATTTTTTTTCTGTTTCCAAAATATGGAGTTTTCTACTTTGTAAATT
64 TTTGTTTTATGAGTTTTAGAATTTTTTTATGTTTCCAAAATATAGAGTTTTCTACTTCGTAAATT
*
2536625 TTTTGATTGGATTTCTCTCAGTTCA
129 TTTTGATTGGATTTCTCTCAATTCA
* ** * **
2536650 AAATTTTTAAAATTCATCAAATATTATTGTTTAATTCATGTTAAATCAGTTTTGAAAAATTCAAT
1 AAACTTTTAAAATTCATCAAATATTATCATTAAATTCACATTAAATCAGTTTT-AAAAATTCAAT
2536715 TTGTTTTATGAGTTTTAGAATTTTTTTAT-TTT-CAAAATATAGAGTTTTCTACTTCGTAAATTT
65 TTGTTTTATGAGTTTTAGAATTTTTTTATGTTTCCAAAATATAGAGTTTTCTACTTCGTAAA-TT
* * *
2536778 TTTTGGTTGGATTTTTCTCAATTCG
129 TTTTGATTGGATTTCTCTCAATTCA
** * *
2536803 AAACTTTTAAAATTCATGTAATATTGTCATTAAATTCACATTAAATTAGTTTTACAAAATTCAAT
1 AAACTTTTAAAATTCATCAAATATTATCATTAAATTCACATTAAATCAGTTTTA-AAAATTCAAT
* *
2536868 TTATTTTATAAGTTT
65 TTGTTTTATGAGTTT
2536883 CAAACTTTTT
Statistics
Matches: 197, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
152 27 0.14
153 95 0.48
154 72 0.37
155 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.09, T:0.49
Consensus pattern (153 bp):
AAACTTTTAAAATTCATCAAATATTATCATTAAATTCACATTAAATCAGTTTTAAAAATTCAATT
TGTTTTATGAGTTTTAGAATTTTTTTATGTTTCCAAAATATAGAGTTTTCTACTTCGTAAATTTT
TTGATTGGATTTCTCTCAATTCA
Found at i:2537400 original size:20 final size:20
Alignment explanation
Indices: 2537367--2537417 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2537357 AGAAAAAAGC
2537367 AAAAA-AAAAAAAAGAGA-A
1 AAAAAGAAAAAAAAGAGAGA
2537385 AAAAAGAAAGAAAAAGAGAGA
1 AAAAAGAAA-AAAAAGAGAGA
*
2537406 AAAATGAAAAAA
1 AAAAAGAAAAAA
2537418 CTAAGCCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 5 0.17
19 3 0.10
20 12 0.41
21 9 0.31
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (20 bp):
AAAAAGAAAAAAAAGAGAGA
Found at i:2540762 original size:22 final size:21
Alignment explanation
Indices: 2540734--2540775 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
2540724 CTCTAAATAA
*
2540734 GAAACAAAAAAATAACAAAAAT
1 GAAACAAAAAAACAA-AAAAAT
2540756 GAAACAAAAAAACAAAAAAA
1 GAAACAAAAAAACAAAAAAA
2540776 GCATGAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.81, C:0.10, G:0.05, T:0.05
Consensus pattern (21 bp):
GAAACAAAAAAACAAAAAAAT
Found at i:2541608 original size:112 final size:112
Alignment explanation
Indices: 2541404--2541736 Score: 420
Period size: 112 Copynumber: 3.0 Consensus size: 112
2541394 TTGAAATAAT
* *
2541404 ATCAAATTTGTCTAATTTTCAATGAAATTCATATTTTATACAACCTGGTCCATTCATGCCGAGGA
1 ATCAAATTTGTCTAATTTTCAAAGAAATTCATATTTTATACAACCTGATCCATTCATGCCGAGGA
* * * *
2541469 AAATAGGGCATGTATCCTATTAGTTTTGAAATTTTTGC-GCCAACAAC
66 AAATAAGGCATGTATCCTATCAATTTTGAAAATTTT-CAGCCAACAAC
* *
2541516 ATCAAATTTGTCTAATTTTCAAAGAAATTCATGTTTTATACAACCTGATCCATTCATGCCTAGGA
1 ATCAAATTTGTCTAATTTTCAAAGAAATTCATATTTTATACAACCTGATCCATTCATGCCGAGGA
* *
2541581 AAGTAAGGTATGTATCCTATCAATTTTGAAAATTTTCAGCCAACAAC
66 AAATAAGGCATGTATCCTATCAATTTTGAAAATTTTCAGCCAACAAC
* ** * ** **
2541628 ATCAAATTTGTCTAATTTTCAAAGAAATTTATATTTTATATGATCTGA-CCTATTTGTGCTTAGG
1 ATCAAATTTGTCTAATTTTCAAAGAAATTCATATTTTATACAACCTGATCC-ATTCATGCCGAGG
* * * *
2541692 AAAATAGGGCATGCATCCTATCAATTCT-AAAATTTTTAAGCCAAC
65 AAAATAAGGCATGTATCCTATCAATTTTGAAAA-TTTTCAGCCAAC
2541737 TAAAGTTTTT
Statistics
Matches: 194, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
111 7 0.04
112 187 0.96
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (112 bp):
ATCAAATTTGTCTAATTTTCAAAGAAATTCATATTTTATACAACCTGATCCATTCATGCCGAGGA
AAATAAGGCATGTATCCTATCAATTTTGAAAATTTTCAGCCAACAAC
Found at i:2542446 original size:23 final size:23
Alignment explanation
Indices: 2542413--2542456 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
2542403 GTACATTTGG
2542413 ATTTTAAATGACATTAGTATTGC
1 ATTTTAAATGACATTAGTATTGC
* *
2542436 ATTTTAGATGACATTATTATT
1 ATTTTAAATGACATTAGTATT
2542457 TACATTATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (23 bp):
ATTTTAAATGACATTAGTATTGC
Found at i:2542618 original size:88 final size:88
Alignment explanation
Indices: 2542466--2542664 Score: 247
Period size: 88 Copynumber: 2.3 Consensus size: 88
2542456 TTACATTATC
* * * * *
2542466 TCAAGTACATTTGCCTCTTTATTGATCCTTCCATTTTCATTGTTTCATGTACGTTTGCATTTTAG
1 TCAAGTACATTTGCCTCTTTATTGATCCTTCCATTTTCATTGTTTAATGCACATCTGCACTTTAG
*
2542531 ATAGTAATAGTATTTGCATCATT
66 ATAGCAATAGTATTTGCATCATT
* * * *
2542554 TGAAGTACATTTGCCTCTTTATTGATCTTTGCATTTTCATTGTTTAATGCATATCTGCACTTTAG
1 TCAAGTACATTTGCCTCTTTATTGATCCTTCCATTTTCATTGTTTAATGCACATCTGCACTTTAG
* * * *
2542619 ATGGCATTGGTATTTGTATCATT
66 ATAGCAATAGTATTTGCATCATT
*
2542642 TCATA-TACATTTGCCACTTTATT
1 TCA-AGTACATTTGCCTCTTTATT
2542665 AATGCTTACA
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 93 0.99
89 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.48
Consensus pattern (88 bp):
TCAAGTACATTTGCCTCTTTATTGATCCTTCCATTTTCATTGTTTAATGCACATCTGCACTTTAG
ATAGCAATAGTATTTGCATCATT
Found at i:2543642 original size:22 final size:22
Alignment explanation
Indices: 2543617--2543664 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
2543607 TAAAACAAAA
*
2543617 AAAAT-AATGAACAAATTTACAT
1 AAAATAAATGAACAAA-ATACAT
*
2543639 AAAATAAATGCACAAAATACAT
1 AAAATAAATGAACAAAATACAT
2543661 AAAA
1 AAAA
2543665 AGAGAGGCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.65, C:0.10, G:0.04, T:0.21
Consensus pattern (22 bp):
AAAATAAATGAACAAAATACAT
Found at i:2543642 original size:23 final size:23
Alignment explanation
Indices: 2543616--2543665 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
2543606 GTAAAACAAA
*
2543616 AAAAAT-AATGAACAAATTTACAT
1 AAAAATAAATGAACAAA-ATACAT
*
2543639 -AAAATAAATGCACAAAATACAT
1 AAAAATAAATGAACAAAATACAT
2543661 AAAAA
1 AAAAA
2543666 GAGAGGCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.66, C:0.10, G:0.04, T:0.20
Consensus pattern (23 bp):
AAAAATAAATGAACAAAATACAT
Found at i:2544111 original size:80 final size:79
Alignment explanation
Indices: 2543968--2544381 Score: 388
Period size: 80 Copynumber: 5.2 Consensus size: 79
2543958 TGAAAATCAG
* * * *
2543968 GGTTAGAGTATCCCTTC-AAAGATGGTAAGGCTGGAGTATCCCTAGAGATGTAAAA-TTCGGTGT
1 GGTTAGAGTATCCCCTCGAAA-ATGGTAGGGTTGGAGTATCCCTA-AGATG-AAAATTTCAGTGT
* * *
2544031 TCTAGAAATAAAAACAA
63 TTTAGAAGTAAAAACGA
* * *
2544048 GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGAGTATCCTCTGAGATGAAAATTTCAGTGTTT
1 GGTTAGAGTATCCCCTCGAAAATGGTAGGGTTGGAGTATCC-CTAAGATGAAAATTTCAGTGTTT
* *
2544113 TAGAAATAAAAATGA
65 TAGAAGTAAAAACGA
* * *
2544128 GGTTAGAGTATCCCCTCGAAAATGGTGGGGTTGAAATATCTCCTAAGATGAAAATTTC-GATGTT
1 GGTTAGAGTATCCCCTCGAAAATGGTAGGGTTGGAGTATC-CCTAAGATGAAAATTTCAG-TGTT
*
2544192 TTAGAAGTAAAAACAA
64 TTAGAAGTAAAAACGA
* * * * * *
2544208 GGTTAGAGTATCCCCATAG-AGATGGTAGGGTTGAAGTATCCCTAAAGATAAAAAATTTGA-TAT
1 GGTTAGAGTATCCCC-TCGAAAATGGTAGGGTTGGAGTATCCCT-AAGAT-GAAAATTTCAGTGT
*
2544271 TTTAGAAGTAAAAACGG
63 TTTAGAAGTAAAAACGA
* * * * * * * *
2544288 GGTTGGAGTGTCCCTTTGGAAATGGTAGGGTTGGAGTATCCCCAAAGATGAAGAAATTCAATGTT
1 GGTTAGAGTATCCCCTCGAAAATGGTAGGGTTGGAGTAT-CCCTAAGATGAA-AATTTCAGTGTT
* *
2544353 TTAGAAGTAAAAATGG
64 TTAGAAGTAAAAACGA
*
2544369 GGTTGGAGTATCC
1 GGTTAGAGTATCC
2544382 TCGAGATGAA
Statistics
Matches: 282, Mismatches: 39, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
79 12 0.04
80 222 0.79
81 48 0.17
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (79 bp):
GGTTAGAGTATCCCCTCGAAAATGGTAGGGTTGGAGTATCCCTAAGATGAAAATTTCAGTGTTTT
AGAAGTAAAAACGA
Found at i:2544413 original size:51 final size:53
Alignment explanation
Indices: 2544315--2544433 Score: 161
Period size: 51 Copynumber: 2.3 Consensus size: 53
2544305 GGAAATGGTA
* *
2544315 GGGTTGGAGTATCCCCAAAGATGAAGAAATTCAATGTTTTAGAAGTAAAAATG
1 GGGTTGGAGTATCCTCAAAGATGAAGAAATTCAATATTTTAGAAGTAAAAATG
* * *
2544368 GGGTTGGAGTATCCTC-GAGATGAA-AAATTCAATATTTTGGTAGTAAAAATG
1 GGGTTGGAGTATCCTCAAAGATGAAGAAATTCAATATTTTAGAAGTAAAAATG
* *
2544419 AGGTTAGAGTATCCT
1 GGGTTGGAGTATCCT
2544434 TTTGGAAATG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 37 0.63
52 7 0.12
53 15 0.25
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.29
Consensus pattern (53 bp):
GGGTTGGAGTATCCTCAAAGATGAAGAAATTCAATATTTTAGAAGTAAAAATG
Found at i:2544552 original size:79 final size:79
Alignment explanation
Indices: 2544365--2544553 Score: 216
Period size: 79 Copynumber: 2.4 Consensus size: 79
2544355 AGAAGTAAAA
* * * *
2544365 ATGGGGTTGGAGTATCCTCGAGATGAAAAATTCAATATTTTGGTAGTAAAAATGAGGTTAGAGTA
1 ATGGGGTTGGAGTATCCCCGAGATGAAAAATTCAATATGTTGGAAGTAAAAACGAGGTTAGAGTA
** **
2544430 TCCTTTTGGAAATG
66 TCCCCTCAGAAATG
* ** * * * *
2544444 ATGAGGTTGGAGTATCCCTAAGATGAAAAATTCTATGTGTTGGAAGTAAAAACGAGTTTGGAGTA
1 ATGGGGTTGGAGTATCCCCGAGATGAAAAATTCAATATGTTGGAAGTAAAAACGAGGTTAGAGTA
2544509 TCCCCTCAGAAATG
66 TCCCCTCAGAAATG
* *
2544523 GTGGGGTTGGAGTATCCCCGGAGATAAAAAA
1 ATGGGGTTGGAGTATCCCC-GAGATGAAAAA
2544554 ATTTAGTGTT
Statistics
Matches: 89, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 80 0.90
80 9 0.10
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (79 bp):
ATGGGGTTGGAGTATCCCCGAGATGAAAAATTCAATATGTTGGAAGTAAAAACGAGGTTAGAGTA
TCCCCTCAGAAATG
Found at i:2545941 original size:13 final size:13
Alignment explanation
Indices: 2545923--2545948 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2545913 CAATTTTTTG
2545923 TGTATCGATACAT
1 TGTATCGATACAT
2545936 TGTATCGATACAT
1 TGTATCGATACAT
2545949 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2545960 original size:32 final size:33
Alignment explanation
Indices: 2545903--2545966 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2545893 TACAAGCCAA
**
2545903 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2545936 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2545967 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2548166 original size:154 final size:153
Alignment explanation
Indices: 2547899--2548184 Score: 466
Period size: 153 Copynumber: 1.9 Consensus size: 153
2547889 AACGATTAAT
* *
2547899 ATTTATTTATTTTAGAAAAAAAATCATTTTGTACCTTAATGAAAACCCGAAAAGATACAAAAATT
1 ATTTATTTATTTTAGAAAAAAAATCATTTCGTACCTTAATGAAAAACCGAAAAGATACAAAAATT
* *
2547964 TTTTGAAATCTTTTATACCCCTACGGATACCCATAAGGATATAAAAGATTAAAAACGATTAATAT
66 TTTCGAAATCTTTTATACCCCTACGGATACCCATAAGGATACAAAAGATTAAAAACGATTAATAT
2548029 TTGTTTAAATTAAAGGAGAGTGC
131 TTGTTTAAATTAAAGGAGAGTGC
* * *
2548052 ATTTATTTATTTTTGGAAAAAAATCATTTCGTACCTTAATGAAAAACTGAAAAGATACAAAAAGT
1 ATTTATTTATTTTAGAAAAAAAATCATTTCGTACCTTAATGAAAAACCGAAAAGATACAAAAA-T
* *
2548117 TTTTCGAAATCTTTTATACCCTTACGGATACCCAT-AGGAATACAAAAGATTAAAAATGATTAAT
65 TTTTCGAAATCTTTTATACCCCTACGGATACCCATAAGG-ATACAAAAGATTAAAAACGATTAAT
2548181 ATTT
129 ATTT
2548185 TTACCAAAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
153 61 0.50
154 61 0.50
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (153 bp):
ATTTATTTATTTTAGAAAAAAAATCATTTCGTACCTTAATGAAAAACCGAAAAGATACAAAAATT
TTTCGAAATCTTTTATACCCCTACGGATACCCATAAGGATACAAAAGATTAAAAACGATTAATAT
TTGTTTAAATTAAAGGAGAGTGC
Found at i:2549883 original size:166 final size:165
Alignment explanation
Indices: 2549379--2550093 Score: 721
Period size: 165 Copynumber: 4.3 Consensus size: 165
2549369 ACAGCATTAT
* ** * * * *
2549379 ATGAGTTTTAAAAATTTCAAACCAAG-AAAATCCCCCAAAAAAAATTTACGAAGAAG-AAA-ACT
1 ATGAATTTTAAAAATTAAAAATCAAGAAAAATCCCTC-AAAAAAATTTACGGAGTAGAAAATAC-
* * ** * * * * *
2549441 CG-ATTTCTTAAAAAAAAATAATTTCAA-CAAAAAATCAAAAACTCATGAAAATAAATTAATGTT
64 CGTATTT-TGAAAAAAGAGGAGTTTCAAGGAAAAAATAAAAAACTCATGAAAATGAATGAAT-TT
* * * * *
2549504 TT-AAAACTGAAGTAATATGAATAAAATAATGATATTTT
127 TTGAAAACTAAATTAATATAAATAAAATAATAATATTTG
* *
2549542 ATGAATTTTAAAAATTAAAAATCAAGAAAAATCCCTTCGAAAAAATTTACGGAGTAGAAAATTCC
1 ATGAATTTTAAAAATTAAAAATCAAGAAAAATCCC-TCAAAAAAATTTACGGAGTAGAAAATACC
* * * *
2549607 GTATTTCGAAAAAAGGGGAGTTTCAAGG-AAAAATAAAAAATTCATGAAAATGAATAAATTTTTG
65 GTATTTTGAAAAAAGAGGAGTTTCAAGGAAAAAATAAAAAACTCATGAAAATGAATGAATTTTTG
* *
2549671 AAAACTAAATTAATATGAATCAAATAATAATATTTG
130 AAAACTAAATTAATATAAATAAAATAATAATATTTG
* * * * * * * *
2549707 ATGAATTTTAAAAATTTAAAACCGAGAAAAAACCTCTCGAAAAAATTTACGGACTTGAAAACACC
1 ATGAATTTTAAAAATTAAAAATCAAGAAAAATCC-CTCAAAAAAATTTACGGAGTAGAAAATACC
*
2549772 GTATTTTGAAGAAAGAGGAGTTTCAAGGAAAAAATAAAAAACTCATGAAAATGAATGAATTTTTG
65 GTATTTTGAAAAAAGAGGAGTTTCAAGGAAAAAATAAAAAACTCATGAAAATGAATGAATTTTTG
* * *
2549837 AAAAATAAATTAATATAAA-ATAAATGATAAAATTTG
130 AAAACTAAATTAATATAAATA-AAATAATAATATTTG
* * * **
2549873 ATGAATTTTAAAAAATAAAAATCAGGAAAAATCACCTCAAAAAAAATTACACAGTAGAAAATACC
1 ATGAATTTTAAAAATTAAAAATCAAGAAAAATC-CCTCAAAAAAATTTACGGAGTAGAAAATACC
* * * * * ** *
2549938 GTATTTTAGAAAAAAGA-AAATTTCAAGGAATAAATTCAACATTTCATGAAAATGAATGACTTTT
65 GTATTTT-GAAAAAAGAGGAGTTTCAAGGAA-AAAATAAAAAACTCATGAAAATGAATGAATTTT
* *
2550002 TTAAAACTAAATTAATATGAAAT-AAATGATAATATTTG
128 TGAAAACTAAATTAATAT-AAATAAAATAATAATATTTG
* * *
2550040 ATGAATTTTAAAAATTAAAAATTAAGAAAAATGCTCGCAAAAAAATTTACGGAG
1 ATGAATTTTAAAAATTAAAAATCAAGAAAAAT-CCCTCAAAAAAATTTACGGAG
2550094 AAGGACACCC
Statistics
Matches: 459, Mismatches: 77, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
163 22 0.05
164 28 0.06
165 157 0.34
166 138 0.30
167 110 0.24
168 4 0.01
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (165 bp):
ATGAATTTTAAAAATTAAAAATCAAGAAAAATCCCTCAAAAAAATTTACGGAGTAGAAAATACCG
TATTTTGAAAAAAGAGGAGTTTCAAGGAAAAAATAAAAAACTCATGAAAATGAATGAATTTTTGA
AAACTAAATTAATATAAATAAAATAATAATATTTG
Found at i:2550196 original size:333 final size:328
Alignment explanation
Indices: 2549537--2550214 Score: 719
Period size: 333 Copynumber: 2.0 Consensus size: 328
2549527 AAATAATGAT
* * * * **
2549537 ATTTTATGAATTTTAAAAATTAAAAATCAAGAAAAATCCCTTCGAAAAAATTTACGGAGTAGAAA
1 ATTTGATGAATTTTAAAAAATAAAAATCAAGAAAAATCCCTTCAAAAAAAATTACACAGTAGAAA
* * ** *
2549602 ATTCCGTATTTCGAAAAAAGGGGAGTTTCAAGGAAAAATAAAAAATTCATGAAAATGAATAAATT
66 ATACCGTATTTAGAAAAAAGGAAAATTTCAAGGAAAAATAAAAAATTCATGAAAATGAATAAATT
* *
2549667 TTTGAAAACTAAATTAATATGAATCAAATAATAATATTTGATGAATTTTAAAAATTTAAAACCGA
131 TTTGAAAACTAAATTAATATGAATCAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAA
* * * * *
2549732 GAAAAAACCTCTCGAAAAAATTTACGGACTTGAAAACACCGTATTTTGAAGAAAGAGGAGTTTCA
196 GAAAAAACCTCGCAAAAAAATTTACGGA--TGAAAACACCCTATTTAGAAGAAAGAGGAGATTC-
** * ** *
2549797 AGGAAAAAATAAAAAACTCATGAAAATGAATGAATTTTTGAAAAATAAATTAATATAAAATAAAT
258 AGGAAAAAATAAAAAACTCACCAAAATAAATGAATTTTCCAAAAATAAATTAATAGAAAATAAAT
2549862 GATAAA
323 GATAAA
*
2549868 ATTTGATGAATTTTAAAAAATAAAAATCAGGAAAAATCACC-TCAAAAAAAATTACACAGTAGAA
1 ATTTGATGAATTTTAAAAAATAAAAATCAAGAAAAATC-CCTTCAAAAAAAATTACACAGTAGAA
* * * *
2549932 AATACCGTATTTTAGAAAAAA-GAAAATTTCAAGGAATAAATTCAACATTTCATGAAAATGAATG
65 AATACCGTA-TTTAGAAAAAAGGAAAATTTCAAGGAA-AAA-TAAAAAATTCATGAAAATGAATA
* * *
2549996 ACTTTTTTAAAACTAAATTAATATGAAAT-AAATGATAATATTTGATGAATTTTAAAAATTAAAA
127 AATTTTTGAAAACTAAATTAATATG-AATCAAATAATAATATTTGATGAATTTTAAAAATTAAAA
** ** * *
2550060 ATTAAGAAAAATGCTCGCAAAAAAATTTACGGA-GAAGGACACCCTATAATTAGAA-AATATTAG
191 ACCAAGAAAAAACCTCGCAAAAAAATTTACGGATGAA-AACACCCTAT--TTAGAAGAA-A-GAG
* * * *
2550123 GA-ATTC-GGAAAGAAAATCAATAACTC-CCAAAATAAAGTGAA-TTTCCAAAAACTAATTTGAT
251 GAGATTCAGG-AA-AAAATAAAAAACTCACCAAAATAAA-TGAATTTTCCAAAAA-TAAATTAAT
* * *
2550184 CGAAATTAAATGATAAT
312 AGAAAATAAATGATAAA
2550201 ATTTGA-GAAATTTT
1 ATTTGATG-AATTTT
2550215 GATGTATGAA
Statistics
Matches: 287, Mismatches: 45, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
330 3 0.01
331 84 0.29
332 35 0.12
333 158 0.55
334 7 0.02
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (328 bp):
ATTTGATGAATTTTAAAAAATAAAAATCAAGAAAAATCCCTTCAAAAAAAATTACACAGTAGAAA
ATACCGTATTTAGAAAAAAGGAAAATTTCAAGGAAAAATAAAAAATTCATGAAAATGAATAAATT
TTTGAAAACTAAATTAATATGAATCAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAA
GAAAAAACCTCGCAAAAAAATTTACGGATGAAAACACCCTATTTAGAAGAAAGAGGAGATTCAGG
AAAAAATAAAAAACTCACCAAAATAAATGAATTTTCCAAAAATAAATTAATAGAAAATAAATGAT
AAA
Found at i:2551157 original size:43 final size:42
Alignment explanation
Indices: 2551105--2551205 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 42
2551095 CGGGGAAAAA
* * *
2551105 AGATGAAGAAGTTTCTC-GAGTCTGAG-TCGACGGGCAGACGAT
1 AGATGAAGAAGTTTCCCAG-GTCTAAGCT-GACGGGCAAACGAT
*
2551147 AGATGAAAGAAGTCTCCCAGGTCTAAGCTGACGGGCAAACGAT
1 AGATG-AAGAAGTTTCCCAGGTCTAAGCTGACGGGCAAACGAT
*
2551190 GGATGAAGAAGTTTCC
1 AGATGAAGAAGTTTCC
2551206 TGGGCTTGAG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
42 15 0.30
43 33 0.66
44 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.20
Consensus pattern (42 bp):
AGATGAAGAAGTTTCCCAGGTCTAAGCTGACGGGCAAACGAT
Found at i:2551351 original size:42 final size:42
Alignment explanation
Indices: 2551124--2551371 Score: 137
Period size: 42 Copynumber: 5.9 Consensus size: 42
2551114 AGTTTCTCGA
* * *
2551124 GTCTGAGTCGACGGGCAGACGATAGATGAAAGAAGTCTCCCAG
1 GTCTGAGCCGACGGGCAGACGAAAGAT-AAAGAAGTCTCCTAG
* * * ** * *
2551167 GTCTAAGCTGACGGGCAAACGATGGATGAAGAAGTTTCCT-G
1 GTCTGAGCCGACGGGCAGACGAAAGATAAAGAAGTCTCCTAG
* * ** * *
2551208 GGCTTGAGCCGATGGGCAGACGATTGATAAAGAAAGTCTCTTGG
1 GTC-TGAGCCGACGGGCAGACGAAAGATAAAG-AAGTCTCCTAG
* * ** * * *
2551252 GACTGAGTCGATAGGCTGACAAAAGAT---GAAGTCTCTTAG
1 GTCTGAGCCGACGGGCAGACGAAAGATAAAGAAGTCTCCTAG
* * * * *
2551291 G-CTTAAGCCGATGAGCAGACGAAAGATTAAGAAGTTTCCTAG
1 GTC-TGAGCCGACGGGCAGACGAAAGATAAAGAAGTCTCCTAG
* **
2551333 GTCTGAGCCGACAGGCAGACGATTGATAAAGAAAGTCTC
1 GTCTGAGCCGACGGGCAGACGAAAGATAAAG-AAGTCTC
2551372 TCAGGACTGA
Statistics
Matches: 155, Mismatches: 41, Indels: 18
0.72 0.19 0.08
Matches are distributed among these distances:
38 1 0.01
39 29 0.19
40 1 0.01
41 3 0.02
42 64 0.41
43 54 0.35
44 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (42 bp):
GTCTGAGCCGACGGGCAGACGAAAGATAAAGAAGTCTCCTAG
Found at i:2551505 original size:41 final size:42
Alignment explanation
Indices: 2551450--2551550 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 42
2551440 AAAAATGGAA
* * * * *
2551450 AAGTCTCTTAGGTCTAAGCCGACGGGTAGATAATGGATG-AG
1 AAGTCTCTTGGGTCTAAGCCAACAGGCAGACAATGGATGAAG
* * *
2551491 AAGTCTCTCGGGTCTGAGCCAACAGGCAGACGATGGATGAAG
1 AAGTCTCTTGGGTCTAAGCCAACAGGCAGACAATGGATGAAG
*
2551533 AAGTCTTTTGGGTCTAAG
1 AAGTCTCTTGGGTCTAAG
2551551 TTGACGAGCA
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 31 0.65
42 17 0.35
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.24
Consensus pattern (42 bp):
AAGTCTCTTGGGTCTAAGCCAACAGGCAGACAATGGATGAAG
Found at i:2552402 original size:78 final size:78
Alignment explanation
Indices: 2552222--2552414 Score: 224
Period size: 78 Copynumber: 2.5 Consensus size: 78
2552212 CCTGTGGGAT
* * * * * *
2552222 GTGCCCCTTATGGCCATGTGATGCATCAATACCATTTACTATTTAGGAAGGAAGGATATGATTGG
1 GTGCCCCTTTTGGCCATGTGATGCACCAATATCATCTACTACTTAGGAAGGAAGGATATGATTAG
*
2552287 GAATGTATGGGAA
66 GAATGTATAGGAA
** * * ** * *
2552300 ACGTCCCTCTTGGAGATGTGATGCACCAATATCATCTAGTGCTTAGGAAGGAAGGATATGATTAG
1 GTGCCCCTTTTGGCCATGTGATGCACCAATATCATCTACTACTTAGGAAGGAAGGATATGATTAG
*
2552365 GAATGTGTAGGAA
66 GAATGTATAGGAA
* *
2552378 GTGCCCCTTTTGGCCTTGTAATGCACCAATATCATCT
1 GTGCCCCTTTTGGCCATGTGATGCACCAATATCATCT
2552415 GGCATTTGGG
Statistics
Matches: 91, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
78 91 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (78 bp):
GTGCCCCTTTTGGCCATGTGATGCACCAATATCATCTACTACTTAGGAAGGAAGGATATGATTAG
GAATGTATAGGAA
Found at i:2565028 original size:126 final size:127
Alignment explanation
Indices: 2564898--2565137 Score: 324
Period size: 126 Copynumber: 1.9 Consensus size: 127
2564888 TCAAAAAATG
* * * * * **
2564898 TCATTTTATACCTTAATGGATA-CCTACAAAGAGACGAAAATTTTTTGAAATC-TTTTATATCGT
1 TCATTTTATACCTTAAT-GAAACCCGA-AAAGAGACAAAAAGTTTTTGAAATCTTTTTATACCCC
*
2564961 TACGGATCCCCATAGGAACATAAAAGATTAAAAACAATTAATATTT-TTTATTTTGGAAAAAAA
64 TACGGATACCCATAGGAACATAAAAGATTAAAAACAATTAATATTTATTTATTTTGGAAAAAAA
* *
2565024 TCATTTTGTACCTTAATGAAACCCGAAAAGATACAAAAAGTTTTTGAAATCTTTTTATACCCCTA
1 TCATTTTATACCTTAATGAAACCCGAAAAGAGACAAAAAGTTTTTGAAATCTTTTTATACCCCTA
* **
2565089 CGGATACCCATAGGAATATAAAAGATTAAAAATGATTAATATTTATTTA
66 CGGATACCCATAGGAACATAAAAGATTAAAAACAATTAATATTTATTTA
2565138 AATTAACGGG
Statistics
Matches: 98, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
125 25 0.26
126 69 0.70
127 4 0.04
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (127 bp):
TCATTTTATACCTTAATGAAACCCGAAAAGAGACAAAAAGTTTTTGAAATCTTTTTATACCCCTA
CGGATACCCATAGGAACATAAAAGATTAAAAACAATTAATATTTATTTATTTTGGAAAAAAA
Found at i:2565176 original size:152 final size:148
Alignment explanation
Indices: 2565003--2565282 Score: 395
Period size: 150 Copynumber: 1.9 Consensus size: 148
2564993 AACAATTAAT
** **
2565003 ATTTTTTATTTTGGAAAAAAATCATTTTGTACCTTAAT-GAAACCCGAAAAGATACAAAAAGTTT
1 ATTTTTTATTTTGGAAAAAAATCATTTCATACCTTAATGGAAAAACG-AAAGATA-AAAAAGTTT
* *
2565067 TTGA-AATCTTTTTATACCCCTACGGATACCCAT-AGGAATATAAAAGATTAAAAATGATTAATA
64 TTCAGAATC-TTTTATACCCC-ACGGATACCCATGAGG-ATATAAAAGATTAAAAATAATTAATA
2565130 TTTATTTAAATTAACGGGAGTGA
126 TTTATTTAAATTAACGGGAGTGA
**
2565153 ATTTATTTATTTTTGGAAAAAAATCATTTCATACCTTAATGGAAAAACGAAAGATAGGAAAGTTT
1 ATTT-TTTA-TTTTGGAAAAAAATCATTTCATACCTTAATGGAAAAACGAAAGATAAAAAAGTTT
*
2565218 TTCAGAATCTTTTATTCCCCACGGATACCCATGAGGATATAAAAGATTAAAAATAATTAATATTT
64 TTCAGAATCTTTTATACCCCACGGATACCCATGAGGATATAAAAGATTAAAAATAATTAATATTT
2565283 TTACCAAAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
150 44 0.38
151 27 0.23
152 39 0.34
153 6 0.05
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.35
Consensus pattern (148 bp):
ATTTTTTATTTTGGAAAAAAATCATTTCATACCTTAATGGAAAAACGAAAGATAAAAAAGTTTTT
CAGAATCTTTTATACCCCACGGATACCCATGAGGATATAAAAGATTAAAAATAATTAATATTTAT
TTAAATTAACGGGAGTGA
Found at i:2566309 original size:201 final size:200
Alignment explanation
Indices: 2565950--2566354 Score: 657
Period size: 201 Copynumber: 2.0 Consensus size: 200
2565940 AGGTTAGGAA
* * *
2565950 GAAGCTATACCTTGGCTAGTTTGGTTGGAGCAAAAACTAGCTTGGTTTTTCACTATTTTTCTCTC
1 GAAGCTATACCTTGGCTAGTTTGGTTAGAGCAAAAACTAGCTTGATGTTTCACTATTTTTCTCTC
* * * * ** *
2566015 TTTTCTTTTTCTTTTTCTTCTCTCTTTGCTAGCTAATCATTAACCTTATTTTGCAGTAGCTCTTC
66 CTTTCTTTCTCTTTTTCTTCTCTCTTTGCTAGCTAACCATTAACCTTATTTCGCAACAGCTCATC
* *
2566080 CTCTATTTATAGATGTAAGCTTAAGGATTGAATGAACCAAGAGTGGGGTGAATTGGTTCTTATCA
131 CTCTATTTATAGATCTAAGCTCAAGGATTGAATGAACCAAGAG-GGGGTGAATTGGTTCTTATCA
2566145 AAATTT
195 AAATTT
*
2566151 GAAGCTATACCTTGGCTAGTTTGGTTAGAGCGAAAACTAGCTTGATGTTTCACTATTTTTCTCTC
1 GAAGCTATACCTTGGCTAGTTTGGTTAGAGCAAAAACTAGCTTGATGTTTCACTATTTTTCTCTC
* *
2566216 CTTTCTTTCTCTTTTTCTTCTCTCTTTGCTAGCTGACCATTAACCTTATTTCGTAACAGCTCATC
66 CTTTCTTTCTCTTTTTCTTCTCTCTTTGCTAGCTAACCATTAACCTTATTTCGCAACAGCTCATC
*
2566281 CTCTATTTATAGATCTAAGCTCAAGGATTGAATGAACCAAGAGGGGGTGAATTGGTTCTTATCGA
131 CTCTATTTATAGATCTAAGCTCAAGGATTGAATGAACCAAGAGGGGGTGAATTGGTTCTTATCAA
2566346 AATTT
196 AATTT
2566351 GAAG
1 GAAG
2566355 ATTTTGAAAG
Statistics
Matches: 188, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
200 30 0.16
201 158 0.84
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (200 bp):
GAAGCTATACCTTGGCTAGTTTGGTTAGAGCAAAAACTAGCTTGATGTTTCACTATTTTTCTCTC
CTTTCTTTCTCTTTTTCTTCTCTCTTTGCTAGCTAACCATTAACCTTATTTCGCAACAGCTCATC
CTCTATTTATAGATCTAAGCTCAAGGATTGAATGAACCAAGAGGGGGTGAATTGGTTCTTATCAA
AATTT
Found at i:2575908 original size:61 final size:61
Alignment explanation
Indices: 2575813--2576090 Score: 299
Period size: 61 Copynumber: 4.6 Consensus size: 61
2575803 CGAAGCATGC
*
2575813 TTGGTGGCACCTTCCAG-TCTTTAAAGAGCAGGATGCCTCTTCCTTTTAAAGCCCACACAAG
1 TTGGTGGCACCTTCCAGTTC-TTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAG
* *
2575874 TTGGTGGCACCTTCCAGTTCTTAAAGTGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAA
1 TTGGTGGCACCTTCCAGTTCTTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAG
* * ** * * * * * * *
2575935 TTGGTAGCATCTTTTAGTCCTCAAAGAGCATGACGCCTTGTCCTTTTAAAGCCTATACAAG
1 TTGGTGGCACCTTCCAGTTCTTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAG
* * * * ** * **
2575996 TTGGTGGCACCTTTCAG-TCATCAAAGAGTAGGACGTATTTTCCTTTTAAAGCTCGTACAAG
1 TTGGTGGCACCTTCCAGTTC-TTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAG
* *
2576057 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGAT
1 TTGGTGGCACCTTCCAGTTCTTAAAGAGCAGGAT
2576091 ACTTCTTTTT
Statistics
Matches: 180, Mismatches: 34, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
60 1 0.01
61 176 0.98
62 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTCCAGTTCTTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAG
Found at i:2576104 original size:61 final size:61
Alignment explanation
Indices: 2575813--2576156 Score: 241
Period size: 61 Copynumber: 5.6 Consensus size: 61
2575803 CGAAGCATGC
* * * * *
2575813 TTGGTGGCACCTTCCAGTCTTTAAAGAGCAGGATGCCTCTTCCTTTTAAAGCCCACACAAG
1 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGATACTTCTTTCTTTTAAAGCCCACACAAG
* * * * * *
2575874 TTGGTGGCACCTTCCAGTTCTTAAAGTGCAGGATGCCTT-TTCCTTTTAAAGCCCACACAAA
1 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGAT-ACTTCTTTCTTTTAAAGCCCACACAAG
* * * * * ** * *
2575935 TTGGTAGCATCTTTTAGTCCTCAAAGAGCATG--ACGCCTTGTCCTTTTAAAGCCTATACAAG
1 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGATACTTCTT-T-CTTTTAAAGCCCACACAAG
* * * * * **
2575996 TTGGTGGCACCTT-TCAGTCATCAAAGAGTAGGACGTA-TT-TTCCTTTTAAAGCTCGTACAAG
1 TTGGTGGCACCTTCT-AGTCCTTAAAGAGCAGGA--TACTTCTTTCTTTTAAAGCCCACACAAG
* * * *
2576057 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGATACTTCTTTTTTTTAAAAAAAAACCTACATAA
1 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGATACTTCTTTCTTTT-----AAAGCCCACACAA
2576122 G
61 G
* * *
2576123 CTGGTGGCACCTTTTAGTCCTTATAGAGCAGGAT
1 TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGAT
2576157 GCCTCTCTCA
Statistics
Matches: 220, Mismatches: 46, Indels: 29
0.75 0.16 0.10
Matches are distributed among these distances:
58 1 0.00
59 4 0.02
60 3 0.01
61 167 0.76
62 3 0.01
63 2 0.01
65 1 0.00
66 39 0.18
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (61 bp):
TTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGATACTTCTTTCTTTTAAAGCCCACACAAG
Found at i:2579353 original size:79 final size:79
Alignment explanation
Indices: 2579150--2579618 Score: 488
Period size: 79 Copynumber: 5.9 Consensus size: 79
2579140 TTTCATTCAT
* * * * * *
2579150 GTTTTATTTCTAAAACACCGA-TTTTCTACCATTGGGGATACTCCAACCCTGTTGTTTTCGAAGG
1 GTTTTATTTCCAAAACATCGATTTTTC-ACAATCGGAGATACTCCAACCCTGTTATTTTCGAAGG
2579214 GATACTCCAACCCC-
65 GATACTCCAACCCCA
* * ** *
2579228 GATTTTA-TTCCAAAACATCGACTTTCCACAATTAGAGATACTCCAACCAC-GTTATTTTCAAAG
1 G-TTTTATTTCCAAAACATCGATTTTTCACAATCGGAGATACTCCAACC-CTGTTATTTTCGAAG
2579291 GGATACTCCAACCCCA
64 GGATACTCCAACCCCA
* * **
2579307 GTCTTATTTCCAAAACACCGATTTTTCACAATCGGAGATACTCCAACCCCATTATTTTCGAAGGG
1 GTTTTATTTCCAAAACATCGATTTTTCACAATCGGAGATACTCCAACCCTGTTATTTTCGAAGGG
* *
2579372 ATACCCCAACCCTA
66 ATACTCCAACCCCA
* * * *
2579386 GTTTTATTTTCAAAACATCTATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTG-AGGC
1 GTTTTATTTCCAAAACATCGATTTTTCACAATCGGAGATACTCCAACCCTGTTATTTTCGAAGG-
*
2579450 AATACTCCAACCCCA
65 GATACTCCAACCCCA
* * * * * *
2579465 GTTTTATTTCTAAAACATCAATTTTTCACTATC-AAGGATACTCCAGCCCTGTTA-TTTCTGAGG
1 GTTTTATTTCCAAAACATCGATTTTTCACAATCGGA-GATACTCCAACCCTGTTATTTTC-GAAG
***
2579528 GGATACTCCAACCTTG
64 GGATACTCCAACCCCA
* * *
2579544 GTTTTTTTTCTAAAACATCGATTTTTCACAATC-GAGGATACTCCAA-CCTCGTTATTTTCGAGG
1 GTTTTATTTCCAAAACATCGATTTTTCACAATCGGA-GATACTCCAACCCT-GTTATTTTCGAAG
*
2579607 GGATATTCCAAC
64 GGATACTCCAAC
2579619 TCCGTTATTT
Statistics
Matches: 331, Mismatches: 48, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
78 71 0.21
79 254 0.77
80 6 0.02
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (79 bp):
GTTTTATTTCCAAAACATCGATTTTTCACAATCGGAGATACTCCAACCCTGTTATTTTCGAAGGG
ATACTCCAACCCCA
Found at i:2579572 original size:237 final size:236
Alignment explanation
Indices: 2579183--2579611 Score: 555
Period size: 237 Copynumber: 1.8 Consensus size: 236
2579173 TTCTACCATT
* * *
2579183 GGGGATACTCCAACCCTGTTGTTTTCGAAGGGATACTCCAACCCCGATTTTATTCCAAAACATCG
1 GGGGATACTCCAACCCTGTTATTTTCGAAGGAATACTCCAACCCCGATTTTATTCCAAAACATCA
*
2579248 ACTTTCCACAATTAGAGATACTCCAACCACGTTATTTTCAAAGGGATACTCCAACCCCAGTCTTA
66 ACTTTCCACAATAAGAGATACTCCAACCACGTTATTTTCAAAGGGATACTCCAACCCCAGTCTTA
2579313 TTTCCAAAACACCGATTTTTCACAATCG-GAGATACTCCAACCCCATTATTTTCGAAGGGATACC
131 TTTCCAAAACACCGATTTTTCACAATCGAG-GATACTCCAACCCCATTATTTTCGAAGGGATACC
2579377 CCAACCCTAGTTTTATTTTCAAAACATCTATTTTTCACAATC
195 CCAACCCTAGTTTTATTTTCAAAACATCTATTTTTCACAATC
* *
2579419 GGGGATACTCCAACCCTGTTATTTTTG-AGGCAATACTCCAACCCC-AGTTTTATTTCTAAAACA
1 GGGGATACTCCAACCCTGTTATTTTCGAAGG-AATACTCCAACCCCGA-TTTTA-TTCCAAAACA
* * * * * * ***
2579482 TCAATTTTTCACTATCAAG-GATACTCCAGCC-CTGTTA-TTTCTGAGGGGATACTCCAACCTTG
63 TCAACTTTCCACAAT-AAGAGATACTCCAACCAC-GTTATTTTC-AAAGGGATACTCCAACCCCA
* * * * * * *
2579544 GTTTTTTTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTTCGAGGGG
125 GTCTTATTTCCAAAACACCGATTTTTCACAATCGAGGATACTCCAACCCCATTATTTTCGAAGGG
2579609 ATA
190 ATA
2579612 TTCCAACTCC
Statistics
Matches: 164, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
235 4 0.02
236 48 0.29
237 109 0.66
238 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (236 bp):
GGGGATACTCCAACCCTGTTATTTTCGAAGGAATACTCCAACCCCGATTTTATTCCAAAACATCA
ACTTTCCACAATAAGAGATACTCCAACCACGTTATTTTCAAAGGGATACTCCAACCCCAGTCTTA
TTTCCAAAACACCGATTTTTCACAATCGAGGATACTCCAACCCCATTATTTTCGAAGGGATACCC
CAACCCTAGTTTTATTTTCAAAACATCTATTTTTCACAATC
Found at i:2579611 original size:107 final size:107
Alignment explanation
Indices: 2579500--2579725 Score: 312
Period size: 107 Copynumber: 2.1 Consensus size: 107
2579490 TCACTATCAA
* ** *
2579500 GGATACTCCAGC-CCTGTTATTTCTGAGGGGATACTCCAACCTTGGTTTTTTTTCTAAAACATCG
1 GGATACTCCAACTCC-GTTATTTCTGAGGGGATACTCCAACCTTGACTTTATTTCTAAAACATCG
*
2579564 ATTTTTCACAATCGAGGATACTCCAACCTCGTTATTT-TCGAGG
65 ATTTTCCACAATCGAGGATACTCCAACCTCGTTATTTCT-GAGG
* * *
2579607 GGATATTCCAACTCCGTTATTTCTGAGGGGATACTCTAACCTTGACTTTATTTCTAAAATATCGA
1 GGATACTCCAACTCCGTTATTTCTGAGGGGATACTCCAACCTTGACTTTATTTCTAAAACATCGA
* * *
2579672 TTTTCCACAATTGGGGATACTCCAATCTCGTTATTTCTGAGG
66 TTTTCCACAATCGAGGATACTCCAACCTCGTTATTTCTGAGG
*
2579714 GGATACTTCAAC
1 GGATACTCCAAC
2579726 CCTAGTTTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
107 101 0.97
108 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (107 bp):
GGATACTCCAACTCCGTTATTTCTGAGGGGATACTCCAACCTTGACTTTATTTCTAAAACATCGA
TTTTCCACAATCGAGGATACTCCAACCTCGTTATTTCTGAGG
Found at i:2579616 original size:28 final size:29
Alignment explanation
Indices: 2579579--2579648 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
2579569 TCACAATCGA
2579579 GGATACTCCAACCT-CGTTATTT-TCGAGG
1 GGATACTCCAACCTCCGTTATTTCT-GAGG
*
2579607 GGATATTCCAA-CTCCGTTATTTCTGAGG
1 GGATACTCCAACCTCCGTTATTTCTGAGG
*
2579635 GGATACTCTAACCT
1 GGATACTCCAACCT
2579649 TGACTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.06
28 31 0.86
29 3 0.08
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (29 bp):
GGATACTCCAACCTCCGTTATTTCTGAGG
Found at i:2579688 original size:79 final size:79
Alignment explanation
Indices: 2579605--2579780 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 79
2579595 TTATTTTCGA
* * *
2579605 GGGGATATTCCAACTCCGTTATTTCTGAGGGGATAC-TCTAA-CCTTGACTTTA-TTTCTAAAAT
1 GGGGATACTCCAACTCCGTTATTTCTGAGGGGATACTTC-AACCCTAG-CTTTATTTTC-AAAAC
2579667 ATCGATTTTCCACAATT
63 ATCGATTTTCCACAATT
*
2579684 GGGGATACTCCAA-TCTCGTTATTTCTGAGGGGATACTTCAACCCTAGTTTTATTTTCAAAACAT
1 GGGGATACTCCAACTC-CGTTATTTCTGAGGGGATACTTCAACCCTAGCTTTATTTTCAAAACAT
* *
2579748 TGATTTTCCACCATT
65 CGATTTTCCACAATT
* *
2579763 GAGGAAACTCCAACTCCG
1 GGGGATACTCCAACTCCG
2579781 GTTTTATTTC
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
78 2 0.02
79 70 0.83
80 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (79 bp):
GGGGATACTCCAACTCCGTTATTTCTGAGGGGATACTTCAACCCTAGCTTTATTTTCAAAACATC
GATTTTCCACAATT
Found at i:2581921 original size:4 final size:4
Alignment explanation
Indices: 2581912--2581961 Score: 82
Period size: 4 Copynumber: 12.5 Consensus size: 4
2581902 ATTGAGGTGC
* *
2581912 TTAT TTAT TTAT TTAT ATAT TTAT TCAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
2581960 TT
1 TT
2581962 TGGTTTGTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:2587069 original size:79 final size:79
Alignment explanation
Indices: 2586955--2587366 Score: 458
Period size: 79 Copynumber: 5.2 Consensus size: 79
2586945 TCATTCCTGT
* * * * *
2586955 TTTTATTTCTAAAATA-CTAATTTCCCACCATCAGGGATACTCCAACCCTGTTATTTCTGAAGGG
1 TTTTATTTCTAAAACATC-GATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTCTGAAGGG
*
2587019 ATACTCTAACCCCGG
65 ATACTCCAACCCCGG
* * * *
2587034 TTTTATTTCTAGAACATCGATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTTGAAGGGA
1 TTTTATTTCTAAAACATCGATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTCTGAAGGGA
2587099 TACTCCAACCCCGG
66 TACTCCAACCCCGG
* * * *
2587113 TTTTATTT-TCAAAACATCGATCTTCCACAATCAGGGATGCTCCAATCCCATTATTTCT-AAGGA
1 TTTTATTTCT-AAAACATCGATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTCTGAAGG-
**
2587176 GATACTCCAACCCTAG
64 GATACTCCAACCCCGG
* * * *
2587192 TTTTATTTCTAAAACATCGATTTTCCACCATC-GGAGATACTCCAACCCCATTATTTTTGAGGGG
1 TTTTATTTCTAAAACATCGATTTTCCACAATCAGG-GATACTCCAACCCCGTTATTTCTGAAGGG
* *
2587256 ACACTCCAACCCTGG
65 ATACTCCAACCCCGG
* * * * *
2587271 TTTTATTACTAAAACATTGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTCT-AAGGGG
1 TTTTATTTCTAAAACATCGATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTCTGAA-GGG
* *
2587335 ATACTCAAACCCCGAT
65 ATACTCCAACCCCG-G
2587351 TTTTATTT-TCAAAACA
1 TTTTATTTCT-AAAACA
2587367 CCATTTTTTT
Statistics
Matches: 282, Mismatches: 41, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
78 8 0.03
79 254 0.90
80 20 0.07
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCGATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTCTGAAGGGA
TACTCCAACCCCGG
Found at i:2587950 original size:5 final size:4
Alignment explanation
Indices: 2587905--2587949 Score: 65
Period size: 4 Copynumber: 11.2 Consensus size: 4
2587895 TTGAGGTGTC
*
2587905 TATT TATT TATT TA-T TATT CATT TATT TATT TATT TATTT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TA-TT TATT T
2587950 TGTTTTGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
3 3 0.08
4 30 0.81
5 4 0.11
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:2589029 original size:182 final size:182
Alignment explanation
Indices: 2588723--2589087 Score: 624
Period size: 182 Copynumber: 2.0 Consensus size: 182
2588713 AATATAAAAG
* *
2588723 ACTTGAAAATAATTGATATTTATTTATGTTTGGAAAAAAATCATTTTGTACCTTAATGGATATCC
1 ACTTGAAAATAATTGATATTTATTTATGTTTGGAAAAAAATCATTTTGTACCTTAATGAATACCC
2588788 GAAAAGATACGAAAAGTTTTTCAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAAG
66 GAAAAGATACGAAAAGTTTTTCAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAAG
2588853 ATT-AAAAACGATTAATGTTTATTATAATTAACAAGGAGTGAATTTAATATT
131 ATTAAAAAACGATTAATGTTTATTATAATTAACAAGGAGTGAATTTAATATT
2588904 ACTTGAAAATAATTGATATTTATTTATGTTTGGAAAAAAAATCATTTTGTACCTTAATGAATACC
1 ACTTGAAAATAATTGATATTTATTTATGTTTGG-AAAAAAATCATTTTGTACCTTAATGAATACC
* * *
2588969 CGAAAAGATACGAAAAGTTTTTTAAAATCTTTTATACCCCTATGGATACCCATAAGAATATTAAA
65 CGAAAAGATACGAAAAGTTTTTCAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAA
* * * **
2589034 GATTAAAAAATGATTAATGTTTGTTGTAATTAATGAGGAGTGAATTTAATATT
130 GATTAAAAAACGATTAATGTTTATTATAATTAACAAGGAGTGAATTTAATATT
2589087 A
1 A
2589088 TTTATTTATT
Statistics
Matches: 172, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
181 33 0.19
182 95 0.55
183 44 0.26
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (182 bp):
ACTTGAAAATAATTGATATTTATTTATGTTTGGAAAAAAATCATTTTGTACCTTAATGAATACCC
GAAAAGATACGAAAAGTTTTTCAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAAG
ATTAAAAAACGATTAATGTTTATTATAATTAACAAGGAGTGAATTTAATATT
Found at i:2590279 original size:141 final size:143
Alignment explanation
Indices: 2589714--2590390 Score: 806
Period size: 141 Copynumber: 4.6 Consensus size: 143
2589704 AAAGATGATG
* *
2589714 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGCCAATATGTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AAGA--AAG-TGCCAATATGCT
* * * * * * *
2589779 GATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAAGGC
62 GATTCAAGGCCAGCTATATTGGACTTAAAGAT--G---AA-GATGCCAATATGCTGATTCAAGGC
*
2589844 CAGCTACATTGAACTTAAAGATGAAA
121 CAGCTACATTGGACTTAAAGAT---A
* * * *
2589870 AAGGTCCCAATATGCTGATTCAAGGCCAGCCATATTGGACTT-A-AAGGTGCCAATGTGCTGATT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAGAAAGTGCCAATATGCTGATT
* * * *
2589933 CAAGGCCAGCTACATTGGACTTAAAGGTGACG-TGCCAATATGTTGATTCAAGGCCAGCTACATT
66 CAAGGCCAGCTATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATT
*
2589997 GGACTTAAAGATG
131 GGACTTAAAGATA
* * *
2590010 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AAG--AAA-GTGCCAATATGCT
* * * * *
2590075 GATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
62 GATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTA
2590140 CATTGGACTTAAAGATA
127 CATTGGACTTAAAGATA
* *
2590157 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-A-AAAGTGCCAATGTGCTGATT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAGAAAGTGCCAATATGCTGATT
*
2590220 CAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATT
66 CAAGGCCAGCTATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATT
*
2590285 GGACTTAAAGATG
131 GGACTTAAAGATA
* * *
2590298 AAGGTGCCAAGATGCTGATTCAAGGCCAGCTATATTGGGCTTAGAAGATGAAGGTGCTAATATGC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--AAGA--AA-GTGCCAATATGC
*
2590363 TGATTCAAGGCCAGCTATATTGGGCTTA
61 TGATTCAAGGCCAGCTATATTGGACTTA
2590391 GAAGGGTTGC
Statistics
Matches: 456, Mismatches: 51, Indels: 36
0.84 0.09 0.07
Matches are distributed among these distances:
140 37 0.08
141 126 0.28
142 4 0.01
143 39 0.09
144 2 0.00
145 5 0.01
146 45 0.10
147 81 0.18
148 37 0.08
150 36 0.08
151 2 0.00
153 1 0.00
154 1 0.00
156 40 0.09
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (143 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAGAAAGTGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATT
GGACTTAAAGATA
Found at i:2590394 original size:50 final size:49
Alignment explanation
Indices: 2589710--2590390 Score: 830
Period size: 49 Copynumber: 14.0 Consensus size: 49
2589700 TTTTAAAGAT
* *
2589710 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * * * * * *
2589759 GATGAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * * *
2589808 GATGAGAAAAAGGATGTCAATGTGCTAATTCAAGGCCAGCTACATTGAACTTAAA
1 GAT--G---AAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
2589863 GATGAAAAAGGTCCCAATATGCTGATTCAAGGCCAGCCATATTGGACTT---
1 GATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
*
2589912 -A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
2589958 GGTG-ACGTGCCAATATGTTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* *
2590006 GATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
2590055 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAT
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
2590104 GGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
2590153 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
*
2590200 -A--AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
*
2590245 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
2590294 GATGAAGGTGCCAAGATGCTGATTCAAGGCCAGCTATATTGGGCTTAGAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTA-AA
* * *
2590344 GATGAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
2590391 GAAGGGTTGC
Statistics
Matches: 547, Mismatches: 65, Indels: 39
0.84 0.10 0.06
Matches are distributed among these distances:
43 74 0.14
44 2 0.00
45 1 0.00
46 2 0.00
47 1 0.00
48 47 0.09
49 296 0.54
50 47 0.09
51 1 0.00
52 31 0.06
53 8 0.01
54 3 0.01
55 34 0.06
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
Found at i:2590434 original size:33 final size:32
Alignment explanation
Indices: 2590383--2590510 Score: 181
Period size: 33 Copynumber: 4.0 Consensus size: 32
2590373 CCAGCTATAT
* *
2590383 TGGGC-TTAGA-AGGGTTGCCACCGACTAGTG
1 TGGGCTTTAGAGAAGGTTGCCACCGACTTGTG
2590413 TGGGCTTTAGAGAATGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAA-GGTTGCCACCGACTTGTG
*
2590446 TGGGCTTT-GAGAAGAGTTGACACCGACTTGTG
1 TGGGCTTTAGAGAAG-GTTGCCACCGACTTGTG
2590478 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AGAAGGTTGCCACCGACTTGTG
2590511 GACTTAAAAG
Statistics
Matches: 88, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
30 5 0.06
31 6 0.07
32 30 0.34
33 42 0.48
34 5 0.06
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.27
Consensus pattern (32 bp):
TGGGCTTTAGAGAAGGTTGCCACCGACTTGTG
Found at i:2590485 original size:65 final size:63
Alignment explanation
Indices: 2590383--2590510 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 63
2590373 CCAGCTATAT
* *
2590383 TGGGCTTAGAAGGGTTGCCACCGACTAGTGTGGGCTTTAG-AGAATGGTTGCCACCGACTTGTG
1 TGGGCTTAGAAGAGTTGACACCGACTAGTGTGGGCTTTAGAAGAA-GGTTGCCACCGACTTGTG
*
2590446 TGGGCTTTGAGAAGAGTTGACACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1 TGGGC-TT-AGAAGAGTTGACACCGACTAGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
2590511 GACTTAAAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
63 5 0.08
64 2 0.03
65 48 0.81
66 4 0.07
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.27
Consensus pattern (63 bp):
TGGGCTTAGAAGAGTTGACACCGACTAGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
Found at i:2590533 original size:33 final size:33
Alignment explanation
Indices: 2590496--2590558 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
2590486 AGAAGAAGGT
2590496 TGCCACCG-ACTTGTGGACTTAAAAGGAAAAGAG
1 TGCCA-CGTACTTGTGGACTTAAAAGGAAAAGAG
* * *
2590529 TGCCACGTAGTTGTGGGCTTTAAAGGAAAA
1 TGCCACGTACTTGTGGACTTAAAAGGAAAA
2590559 AAGGGTGCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (33 bp):
TGCCACGTACTTGTGGACTTAAAAGGAAAAGAG
Found at i:2590595 original size:27 final size:27
Alignment explanation
Indices: 2590557--2590760 Score: 194
Period size: 27 Copynumber: 7.1 Consensus size: 27
2590547 TTTAAAGGAA
**
2590557 AAAAGGGTGCCACGGAGTCATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
2590584 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
2590611 AAACGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* * *
2590638 AGAAGGAAAACGAGTGCCACGAAGTTGTGGGCTTT
1 ------AAAA-GGGTGCCACGGAGTTGTGGAC-TT
*
2590673 AAAAGGGTGCCACGAAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
*
2590701 GATGAGAA-GGTGCCACTGAGTTGTGGACTT
1 -A--A-AAGGGTGCCACGGAGTTGTGGACTT
*
2590731 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
2590758 AAA
1 AAA
2590761 CAGGAAAAGA
Statistics
Matches: 149, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
26 2 0.01
27 73 0.49
28 22 0.15
29 6 0.04
30 2 0.01
31 19 0.13
32 2 0.01
33 3 0.02
34 18 0.12
35 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.36, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:2590655 original size:34 final size:31
Alignment explanation
Indices: 2590491--2590886 Score: 232
Period size: 34 Copynumber: 12.6 Consensus size: 31
2590481 GCTTTAGAAG
* * *
2590491 AAGGTTGCCACCGACTTGTGGACTTAAAAGGAA
1 AAGG-TGCCACGGAGTTGTGGGCTT-AAAGGAA
*
2590524 AAGAGTGCCACGTAGTTGTGGGCTTTAAAGGAAAA
1 AAG-GTGCCACGGAGTTGTGGGC-TTAAAGG--AA
** *
2590559 AAGGGTGCCACGGAGTCATGGACTT--A--AA
1 AA-GGTGCCACGGAGTTGTGGGCTTAAAGGAA
* *
2590587 AGGGTGCCACGGAGTTGTGGGCTTAAACG--
1 AAGGTGCCACGGAGTTGTGGGCTTAAAGGAA
*
2590616 --GGTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAGGTGCCACGGAGTTGTGGGCTTA-AAGGAA
* *
2590646 AACGAGTGCCACGAAGTTGTGGGCTT-TA--AA
1 AA-G-GTGCCACGGAGTTGTGGGCTTAAAGGAA
* * * ** * *
2590676 AGGGTGCCACGAAGTTGTGGACTTTGATGAG
1 AAGGTGCCACGGAGTTGTGGGCTTAAAGGAA
* *
2590707 AAGGTGCCACTGAGTTGTGGACTT--A--AA
1 AAGGTGCCACGGAGTTGTGGGCTTAAAGGAA
*
2590734 AGGGTGCCACGGAGTTGTGGGCTTAAACAGGAA
1 AAGGTGCCACGGAGTTGTGGGCTT-AA-AGGAA
*
2590767 AAGAGTGCCACGGAGCTGTGGGCTTTAAAGAGAAA
1 AAG-GTGCCACGGAGTTGTGGGC-TTAAAG-G-AA
* *
2590802 AAGGTACCACGGAGTTGTGGGCTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGC-TT--AAAGGAA
* *
2590836 AAAGTGCCATGGAGTTGTGGGCTTTGAAAGG--
1 AAGGTGCCACGGAGTTGTGGGC-TT-AAAGGAA
*
2590867 AAGGTGCCACGGAGTCGTGG
1 AAGGTGCCACGGAGTTGTGG
2590887 ATTTTGAGCA
Statistics
Matches: 291, Mismatches: 41, Indels: 64
0.73 0.10 0.16
Matches are distributed among these distances:
27 63 0.22
28 26 0.09
29 4 0.01
30 3 0.01
31 40 0.14
32 2 0.01
33 33 0.11
34 89 0.31
35 26 0.09
36 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.21
Consensus pattern (31 bp):
AAGGTGCCACGGAGTTGTGGGCTTAAAGGAA
Found at i:2590675 original size:89 final size:89
Alignment explanation
Indices: 2590528--2590695 Score: 223
Period size: 89 Copynumber: 1.9 Consensus size: 89
2590518 AAGGAAAAGA
* * * *
2590528 GTGCCACGTAGTTGTGGGCTTTAAAGGAAAAAAGGGTGCCACGGAGTCATGGACTTAAAAGGGTG
1 GTGCCACGGAGTTGTGGACTTTAAAGGAAAAAAGAGTGCCACGAAGTCATGGACTTAAAAGGGTG
*
2590593 CCACGGAGTTGTGGGCTTAAACGG
66 CCACGAAGTTGTGGGCTTAAACGG
* ** *
2590617 GTGCCACGGAGTTGTGGAC-TTAGAAGG-AAAACGAGTGCCACGAAGTTGTGGGCTTTAAAAGGG
1 GTGCCACGGAGTTGTGGACTTTA-AAGGAAAAAAGAGTGCCACGAAGTCATGGAC-TTAAAAGGG
2590680 TGCCACGAAGTTGTGG
64 TGCCACGAAGTTGTGG
2590696 ACTTTGATGA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 23 0.34
89 45 0.66
ACGTcount: A:0.27, C:0.15, G:0.36, T:0.21
Consensus pattern (89 bp):
GTGCCACGGAGTTGTGGACTTTAAAGGAAAAAAGAGTGCCACGAAGTCATGGACTTAAAAGGGTG
CCACGAAGTTGTGGGCTTAAACGG
Found at i:2590739 original size:120 final size:115
Alignment explanation
Indices: 2590491--2590795 Score: 351
Period size: 120 Copynumber: 2.5 Consensus size: 115
2590481 GCTTTAGAAG
* * * *
2590491 AAGGTTGCCACCGACTTGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGGA
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGAGTGCCACGAAGTTGTGGGCTTT------
* *
2590556 AAAAAGGGTGCCACGGAGTCATGGACTTAAAAGGGTGCCACGGAGTTGTGGGCTTAA
60 -AAAAGGGTGCCACGAAGTCATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
* *
2590613 ACGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAACGAGTGCCACGAAGTTGTGGGCTTTAAAAG
1 AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAA-GAGTGCCACGAAGTTGTGGGCTTTAAAAG
** *
2590678 GGTGCCACGAAGTTGTGGACTTTGATGAGAA-GGTGCCACTGAGTTGTGGACTTAA
65 GGTGCCACGAAGTCATGGAC-TT-A--A-AAGGGTGCCACGGAGTTGTGGACTTAA
* * *
2590733 AAGGGTGCCACGGAGTTGTGGGCTTAAACAGGAAAAGAGTGCCACGGAGCTGTGGGCTTTAAA
1 AAGGGTGCCACGGAGTTGTGGACTTAAA-AGGAAAAGAGTGCCACGAAGTTGTGGGCTTTAAA
2590796 GAGAAAAAGG
Statistics
Matches: 160, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
116 22 0.14
117 2 0.01
118 1 0.01
120 73 0.46
121 9 0.06
122 30 0.19
123 23 0.14
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (115 bp):
AAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGG
GTGCCACGAAGTCATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
Found at i:2590906 original size:31 final size:31
Alignment explanation
Indices: 2590871--2590985 Score: 151
Period size: 31 Copynumber: 3.7 Consensus size: 31
2590861 GAAAGGAAGG
* * *
2590871 TGCCACGGAGTCGTGGATTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
* * *
2590902 TGCCACTAAGTCGTGAACTTTGAAGAAAAGGA-
1 TGCCACTGAGTCGTGGACTTTG-AGAAGA-GAT
2590934 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
2590965 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
2590986 AAAAAGGTAT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.03
31 44 0.61
32 24 0.33
33 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:2590946 original size:63 final size:62
Alignment explanation
Indices: 2590867--2590985 Score: 184
Period size: 63 Copynumber: 1.9 Consensus size: 62
2590857 CTTTGAAAGG
* *
2590867 AAGGTGCCACGGAGTCGTGGATTTTGAGCAGAGATTGCCACTAAGTCGTGAACTTTGAAGAA
1 AAGGTGCCACGGAGTCGTGGACTTTGAGAAGAGATTGCCACTAAGTCGTGAACTTTGAAGAA
* * *
2590929 AAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTT
1 AAGG-TGCCACGGAGTCGTGGACTTTGAGAAGAGATTGCCACTAAGTCGTGAACTTT
2590986 AAAAAGGTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
62 4 0.08
63 47 0.92
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (62 bp):
AAGGTGCCACGGAGTCGTGGACTTTGAGAAGAGATTGCCACTAAGTCGTGAACTTTGAAGAA
Found at i:2591955 original size:23 final size:23
Alignment explanation
Indices: 2591928--2591978 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
2591918 TGAAAAGGGG
2591928 TTTTTCCCTTCTTCTTCTCTTTT
1 TTTTTCCCTTCTTCTTCTCTTTT
*** * *
2591951 TTTTTTGTTTCTTCTTTTTTTTT
1 TTTTTCCCTTCTTCTTCTCTTTT
2591974 TTTTT
1 TTTTT
2591979 GGTTGAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTTCCCTTCTTCTTCTCTTTT
Found at i:2591976 original size:20 final size:20
Alignment explanation
Indices: 2591939--2591975 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
2591929 TTTTCCCTTC
2591939 TTCTTCTCTTTTTTTTTTGT
1 TTCTTCTCTTTTTTTTTTGT
2591959 TTCTTCT-TTTTTTTTTT
1 TTCTTCTCTTTTTTTTTT
2591976 TTTGGTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.84
Consensus pattern (20 bp):
TTCTTCTCTTTTTTTTTTGT
Found at i:2599215 original size:52 final size:52
Alignment explanation
Indices: 2599146--2599265 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
2599136 AAAATTTATC
* *
2599146 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCT
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGCT
*
2599198 TGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGCAAATTTGCT
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGCT
2599250 TGCATGTATCGATACA
1 TGCATGTATCGATACA
2599266 AAGATCGGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGCT
Found at i:2599278 original size:52 final size:52
Alignment explanation
Indices: 2599146--2599285 Score: 185
Period size: 52 Copynumber: 2.7 Consensus size: 52
2599136 AAAATTTATC
* *
2599146 TGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGCT
1 TGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTAGGCAAATTTGCT
*** *
2599198 TGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGCAAATTTGCT
1 TGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAATTTGCT
*
2599250 TGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 TGCATGTATCGATACATAAGAT-AGTGTATCGATACA
2599286 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAATTTGCT
Found at i:2599292 original size:13 final size:13
Alignment explanation
Indices: 2599274--2599298 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2599264 CAAAGATCGG
2599274 TGTATCGATACAA
1 TGTATCGATACAA
2599287 TGTATCGATACA
1 TGTATCGATACA
2599299 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2599381 original size:13 final size:13
Alignment explanation
Indices: 2599363--2599387 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2599353 AAAAAAAAAA
2599363 TGTATCGATACAT
1 TGTATCGATACAT
2599376 TGTATCGATACA
1 TGTATCGATACA
2599388 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2601323 original size:181 final size:177
Alignment explanation
Indices: 2601092--2601575 Score: 638
Period size: 181 Copynumber: 2.8 Consensus size: 177
2601082 AATATAAAAG
*
2601092 ACTTGAAAATAATTGATATTTATTTATGTTTGG-AAAAAAATCATTTTGTACCTTAATGGATATC
1 ACTTGAAAATAATTGATA-TTATTTATGTTTGGAAAAAAAATCATTTTGTACCTTAATGGATACC
*
2601156 TGAAAAGATACGAAAAGTTTTTCAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAA
65 CGAAAAGATACGAAAAGTTTTT-AAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAA
2601221 GATTAAAAACGATTAATGTTTATTGAAATTAACAAGGAGTGAATTTAATATT
129 GATTAAAAACGATTAATGTTTATTGAAATTAACAAGGAGTGAATTT-A-A-T
*
2601273 ACTTGAAAATAATTGATATTATTTATGTTTGGAAAAAAAATCATTTTGTACCTTAATGAATACCC
1 ACTTGAAAATAATTGATATTATTTATGTTTGGAAAAAAAATCATTTTGTACCTTAATGGATACCC
* *
2601338 GAAAAGATACGAAAAGTTTTTTAAAATCTTTTATACCCCTATGGATACCCATAAGAATATTAAAG
66 GAAAAGATACGAAAAG-TTTTTAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAAG
* * * **
2601403 ATTAAAAAATGATTAATGTTTGTTGTAATTAATGAGGAGTGAATTTAAT
130 ATT-AAAAACGATTAATGTTTATTGAAATTAACAAGGAGTGAATTTAAT
*
2601452 A-TT----AT--TT-AT-TTA--T-T-TTT-GAAAAAAAATCATTTCGTACCTTAATGGATACCC
1 ACTTGAAAATAATTGATATTATTTATGTTTGGAAAAAAAATCATTTTGTACCTTAATGGATACCC
* * * * * *
2601503 AAAAAGATACGAAAAGTTTTTGAAATCTATTATACCCCCACAGATACCCATAGGAATATAAAAGA
66 GAAAAGATACGAAAAGTTTTTAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAAGA
2601568 TTTAAAAA
131 -TTAAAAA
2601576 TTATTAATAT
Statistics
Matches: 279, Mismatches: 20, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
164 47 0.17
165 49 0.18
166 3 0.01
167 1 0.00
168 1 0.00
170 3 0.01
171 2 0.01
172 2 0.01
174 2 0.01
178 2 0.01
179 2 0.01
180 15 0.05
181 108 0.39
182 42 0.15
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (177 bp):
ACTTGAAAATAATTGATATTATTTATGTTTGGAAAAAAAATCATTTTGTACCTTAATGGATACCC
GAAAAGATACGAAAAGTTTTTAAAATCTTTTATACCCCTATAGATACCCATAAGAATATAAAAGA
TTAAAAACGATTAATGTTTATTGAAATTAACAAGGAGTGAATTTAAT
Found at i:2602950 original size:166 final size:163
Alignment explanation
Indices: 2602777--2603211 Score: 446
Period size: 165 Copynumber: 2.6 Consensus size: 163
2602767 ACGTAAATTG
* * * * ** *
2602777 AATTTTTCAAAACTGAATTAATGCAAGTTCAATGACAATATTAGATGCATTTTAAAAATTTTAGA
1 AATTTTTCAAAACTGAATTAATG-AA-ATAAATGACAATATTTGATGAATTTTAAAAATTGAAAA
* ** * *
2602842 CCGAGAAAAAT-CCCTTTAAAAAATTTACGGAGAAGAAAAAATC-GTATTTTAGAAAAAGAGAAA
64 CCAAGAAAAATCCCCTCGAAAAAATTTACGGAGAAGAAAAAA-CAGTATTTCA-AAAAAAAGAAA
** * *
2602905 TTTCAAGGAAAAAAATCTAAAACTCATGAAAATGGATT
127 TTTCAAGG-AAAAAATAAAAAACTCATGAAAATGAATA
* * * ** *
2602943 TATTTTTCAAAACTGAATTAATATAAATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAAC
1 AATTTTTCAAAACTGAATTAAT-GAAATAAATGACAATATTTGATGAATTTTAAAAATTGAAAAC
* * *
2603008 CAAGAAAAATCCCCTCGAAAAAATTTACGGAGTAGAAAACACAGTATTTCAAAAAAAAGGAATTT
65 CAAGAAAAATCCCCTCGAAAAAATTTACGGAGAAGAAAAAACAGTATTTCAAAAAAAAGAAATTT
2603073 CAAGGAAAAAATAAAAAACTCATGAAAATGAATA
130 CAAGGAAAAAATAAAAAACTCATGAAAATGAATA
* * *
2603107 AATTTTTGAAAACT-AGATTAATATGAAATAAATGACAATATTTGATGAATTTTAAAAGTTAAAA
1 AATTTTTCAAAACTGA-ATT-A-ATGAAATAAATGACAATATTTGATGAATTTTAAAAATTGAAA
** ** * *
2603171 ATTAAGAAAAATATTCC-CGAAAAAATTTACAGATAAGAAAA
63 ACCAAGAAAAAT-CCCCTCGAAAAAATTTACGGAGAAGAAAA
2603212 TCCCATAATT
Statistics
Matches: 221, Mismatches: 41, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
163 1 0.00
164 40 0.18
165 120 0.54
166 60 0.27
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (163 bp):
AATTTTTCAAAACTGAATTAATGAAATAAATGACAATATTTGATGAATTTTAAAAATTGAAAACC
AAGAAAAATCCCCTCGAAAAAATTTACGGAGAAGAAAAAACAGTATTTCAAAAAAAAGAAATTTC
AAGGAAAAAATAAAAAACTCATGAAAATGAATA
Found at i:2605106 original size:43 final size:43
Alignment explanation
Indices: 2604222--2605194 Score: 794
Period size: 43 Copynumber: 22.7 Consensus size: 43
2604212 AAAAGATGAA
* * * *
2604222 GAAGGAAGTCTCTCGAGTCTAAGCCGATGGCCAGATGAAT-GAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACG-ATCGAT
* * * * * **
2604265 GAA-GAAGTCTCTCGAGTCTAAACTGATGGGCAGACAAAAGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * * ***
2604307 GAAGAAAGTCTCTTGAGTCTGGGTCGACAAGCAGACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * *
2604350 GAAGAAAGCCTCCCGGGTCTGAGCCGATGGGCAGACAATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* **
2604393 GAAGGAAGCCTCTCGGGTCTGAGCCGACAGGCAGACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * * * *
2604436 GAAGGAAGTTTTTCGAGTCTGAACCGACGAGCAGACGATCAAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * ** *
2604479 GAAGGAAGTCTATTGGGTCTGAGTTGACGGGCAGACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
*
2604522 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGTAGACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* *
2604565 GAAGGAAGTCTCTCAGGTCTGAGCTGATGGGCAGACGAAT-GAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACG-ATCGAT
** * * *
2604608 GAAGGAAGTCTCTCAAGTTTGAGCCGACGGGCAGACGATTGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * *
2604651 GAAGGAAGTCTCTCGGGTCTGAGCCAATGGGCAGATGATTGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * * *
2604694 GAAGGAAGTCTCCCAGGTCTAAGCCGATGGGTAAACGATTGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * * * * *
2604737 GAATGATGTCTCTTGAGTCTGAGTCGGTGGGCAAACAAAT-GAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGAC-GATCGAT
* * * * **
2604780 GAA-GAAGTCTCCCGGGTCTAAACCGATGGGCAGACAAAAGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * * * *
2604822 GAAGAAAGT-TCTCGGGTCTGGGTCAATAGGTAGATGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * ** *
2604864 GAAGGAAGCCTCTCGAGTCTAAGCCGACAGGCAAACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * *** * *
2604907 GAAGGGAGCCTCCCGGGTCTGAGCCGACAAGTAGACAATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * *
2604950 GAAGGAAGTCTCTCGAGTCTGAGCTGAAGGGTAGATGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * *
2604993 GAAGGAAGTCTCCCGAGTTTGAGCCAACGGGCAGACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
**
2605036 GAACTAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
** * ** *
2605079 GAAAAAAGTCTCCCGGGTCTGAGCCGATGGGCAGATAATTGAT
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
* * * * * *
2605122 GAA-TAATGTCTC-CTAGGTCTGAGTCGATGGGTAGATGATTGAT
1 GAAGGAA-GTCTCTC-GGGTCTGAGCCGATGGGCAGACGATCGAT
* *
2605165 AAAGG-AGTCTCTCGTGTCTGAGCCGATGGG
1 GAAGGAAGTCTCTCGGGTCTGAGCCGATGGG
2605195 TAAATGAATG
Statistics
Matches: 748, Mismatches: 170, Indels: 25
0.79 0.18 0.03
Matches are distributed among these distances:
41 3 0.00
42 115 0.15
43 626 0.84
44 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (43 bp):
GAAGGAAGTCTCTCGGGTCTGAGCCGATGGGCAGACGATCGAT
Done.