Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold376
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 900718
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 6
Found at i:133057 original size:33 final size:33
Alignment explanation
Indices: 133018--133244 Score: 296
Period size: 33 Copynumber: 6.9 Consensus size: 33
133008 TAAAAGAAGA
*
133018 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
* ***
133051 TGCCACCGACTTGTGTGGGCTTTAG-AGGGGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
* *
133083 TGCCACTAACTTGTGTGGGCTTT-GAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
* *
133115 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
** * *
133148 TGCCACTGATTTGTGTGGGCTTTAGAAGAAGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
** *
133181 TGCCACCAACTTGTGTGGGCTTTAGGGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
133214 TGCCACCAACTTGTGTGGGCTTTAGAAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAGAAAAAG
133245 AGAAAGATGT
Statistics
Matches: 166, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
31 1 0.01
32 52 0.31
33 113 0.68
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (33 bp):
TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
Found at i:133292 original size:27 final size:27
Alignment explanation
Indices: 133255--133429 Score: 172
Period size: 27 Copynumber: 6.1 Consensus size: 27
133245 AGAAAGATGT
*
133255 CACGGAGTTGTGGACTTAAAAGGGTGC
1 CACGGAATTGTGGACTTAAAAGGGTGC
* *
133282 CACAGAATTGTGGACTTAGAAGGAAAAAAAGTGC
1 CACGGAATTGTGGACTTAAAAGG-------GTGC
133316 CAC-GAAGTTGTGGACTTAAAAGGGTGC
1 CACGGAA-TTGTGGACTTAAAAGGGTGC
* * *
133343 CACGGAGTTGTGGGCTTTAAAAAGAGTGC
1 CACGGAATTGTGGAC-TT-AAAAGGGTGC
*
133372 CACGGAGTTGTGGACTTAAAAGGGTGC
1 CACGGAATTGTGGACTTAAAAGGGTGC
* *
133399 CACGGAGTCGTGGACTTAAAAGGGTGC
1 CACGGAATTGTGGACTTAAAAGGGTGC
133426 CACG
1 CACG
133430 AAGTTTTGGG
Statistics
Matches: 127, Mismatches: 10, Indels: 22
0.80 0.06 0.14
Matches are distributed among these distances:
27 73 0.57
28 6 0.05
29 23 0.18
33 3 0.02
34 22 0.17
ACGTcount: A:0.30, C:0.15, G:0.34, T:0.21
Consensus pattern (27 bp):
CACGGAATTGTGGACTTAAAAGGGTGC
Found at i:133391 original size:56 final size:55
Alignment explanation
Indices: 133306--133504 Score: 202
Period size: 56 Copynumber: 3.5 Consensus size: 55
133296 CTTAGAAGGA
* * *
133306 AAAAAAGTGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTT
*
133361 AAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTCGTGGAC-TT
1 -AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTT
* * * * *
133416 AAAAGGGTGCCACGAAGTTTTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAA--G-----G-GTGCCACGGAGTTGTGGACTTT
* *
133480 AAAAGGGTGCCATGGAGTTGTGGAC
1 AAAAGAGTGCCACGGAGTTGTGGAC
133505 ATAGAAGGAA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
54 21 0.18
55 8 0.07
56 48 0.40
57 1 0.01
62 1 0.01
63 17 0.14
64 23 0.19
ACGTcount: A:0.29, C:0.14, G:0.35, T:0.22
Consensus pattern (55 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTT
Found at i:133412 original size:83 final size:85
Alignment explanation
Indices: 133312--133504 Score: 264
Period size: 83 Copynumber: 2.2 Consensus size: 85
133302 AGGAAAAAAA
* *
133312 GTGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAAAGAGTGCCACG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGGCTTTAAAAAAGAGTGCCACG
133376 GAGTTGTGGAC-TTAAAAGG
66 GAGTTGTGGACTTTAAAAGG
* *
133395 GTGCCACGGAGTCGTGGACTTAAAAGGGTGCCACGAAGTTTTGGGCTTTAAAAGGGAAAAAGAGT
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGGCTTT---A---AAAAAGAGT
*
133460 GCCACGGAGTTGTGGGCTTTAAAAGG
60 GCCACGGAGTTGTGGACTTTAAAAGG
*
133486 GTGCCATGGAGTTGTGGAC
1 GTGCCACGGAGTTGTGGAC
133505 ATAGAAGGAA
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
83 45 0.47
90 25 0.26
91 25 0.26
ACGTcount: A:0.27, C:0.15, G:0.36, T:0.23
Consensus pattern (85 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGGCTTTAAAAAAGAGTGCCACG
GAGTTGTGGACTTTAAAAGG
Found at i:133463 original size:36 final size:36
Alignment explanation
Indices: 133416--133486 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
133406 TCGTGGACTT
* *
133416 AAAAGGGTGCCACGAAGTTTTGGGCTTTAAAAGGGA
1 AAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGA
*
133452 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGG
1 AAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGGG
133487 TGCCATGGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.32, C:0.11, G:0.35, T:0.21
Consensus pattern (36 bp):
AAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGA
Found at i:133563 original size:34 final size:33
Alignment explanation
Indices: 133515--133606 Score: 127
Period size: 34 Copynumber: 2.8 Consensus size: 33
133505 ATAGAAGGAA
133515 GAAAA-AAAAAGTGCCACAGAGTTGTGGGCTTT
1 GAAAAGAAAAAGTGCCACAGAGTTGTGGGCTTT
*
133547 GAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAGAAAAA-GTGCCACAGAGTTGTGGGCTTT
* *
133581 G--AAGAAAAAATGCCACTGAGTTGTGG
1 GAAAAGAAAAAGTGCCACAGAGTTGTGG
133607 ACTGTGAGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
31 15 0.27
32 13 0.24
33 5 0.09
34 22 0.40
ACGTcount: A:0.36, C:0.12, G:0.32, T:0.21
Consensus pattern (33 bp):
GAAAAGAAAAAGTGCCACAGAGTTGTGGGCTTT
Found at i:133602 original size:31 final size:31
Alignment explanation
Indices: 133519--133740 Score: 164
Period size: 31 Copynumber: 7.1 Consensus size: 31
133509 AAGGAAGAAA
* * *
133519 AAAAAAGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 AAAAAA-TGCCACTGAGTCGTGGACTTTG--AAG
* * * *
133553 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAG
1 AAAAA-ATGCCACTGAGTCGTGGACTTTGAAG
* *
133585 AAAAAATGCCACTGAGTTGTGGACTGTG-AG
1 AAAAAATGCCACTGAGTCGTGGACTTTGAAG
* * *
133615 ATAAAATGCCAATGAGTCGTGGACTTTAAAG
1 AAAAAATGCCACTGAGTCGTGGACTTTGAAG
* * * *
133646 AAAAGGATGCTATTGAGTCGTGGGCTTT-AA-
1 AAAA-AATGCCACTGAGTCGTGGACTTTGAAG
* *
133676 AAAGAGATTGCCACTGAGTCGTGGACTTTGAGG
1 AAA-A-AATGCCACTGAGTCGTGGACTTTGAAG
* * *
133709 AGAGATTGCCACTGAGTCGTGGACTTT-AAG
1 AAAAAATGCCACTGAGTCGTGGACTTTGAAG
133739 AA
1 AA
133741 GGTATTTCAA
Statistics
Matches: 156, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
30 31 0.20
31 69 0.44
32 28 0.18
33 2 0.01
34 26 0.17
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (31 bp):
AAAAAATGCCACTGAGTCGTGGACTTTGAAG
Found at i:139602 original size:18 final size:18
Alignment explanation
Indices: 139542--139602 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
139532 CATCCTTCGC
139542 CAAAAAAAAAAGAGAATAGA
1 CAAAAAAAAAA-AGAA-AGA
*
139562 CAAAAAAAATAAACAAA-A
1 CAAAAAAAA-AAAGAAAGA
139580 CAAAAAACAAAAAGAAAGA
1 CAAAAAA-AAAAAGAAAGA
139599 -AAAA
1 CAAAA
139603 TAGCAAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
18 18 0.50
19 4 0.11
20 12 0.33
21 2 0.06
ACGTcount: A:0.80, C:0.08, G:0.08, T:0.03
Consensus pattern (18 bp):
CAAAAAAAAAAAGAAAGA
Found at i:140714 original size:37 final size:37
Alignment explanation
Indices: 140636--140718 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
140626 CCACAATCAT
* * *
140636 GCATTCGTGACATTCATAACATTTCATTTTGCATGAT
1 GCATTTGTGACATTCATAACATTTCATTTTGCATAAC
*
140673 GCATTTGTGACATTTATAACATTTCATTTTGCATAAC
1 GCATTTGTGACATTCATAACATTTCATTTTGCATAAC
140710 GCATTTGTG
1 GCATTTGTG
140719 CTTCATCTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (37 bp):
GCATTTGTGACATTCATAACATTTCATTTTGCATAAC
Found at i:141118 original size:28 final size:28
Alignment explanation
Indices: 141078--141218 Score: 212
Period size: 28 Copynumber: 5.0 Consensus size: 28
141068 GATATTCCTC
*
141078 ACCTTCAAAAGCCCACAAGTCAGTGGTA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
141106 ACCTTTC-AAAGCCCACAAGTCAGTGGCA
1 ACC-TTCAAAAGCCCACAAGTCAGTGGCA
*
141134 ACCTTCAAAAGCCCACAAGTTAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
* * *
141162 TCTTTTCAAAAGCCCACAAGTTAGTGGCA
1 AC-CTTCAAAAGCCCACAAGTCAGTGGCA
141191 ACCTTCAAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
141219 TCTTTTCTTC
Statistics
Matches: 103, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
27 3 0.03
28 71 0.69
29 29 0.28
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (28 bp):
ACCTTCAAAAGCCCACAAGTCAGTGGCA
Found at i:141201 original size:57 final size:56
Alignment explanation
Indices: 141078--141250 Score: 247
Period size: 57 Copynumber: 3.0 Consensus size: 56
141068 GATATTCCTC
* * *
141078 ACCTTCAAAAGCCCACAAGTCAGTGGTAACCTTTCAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
141134 ACCTTCAAAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTTAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTCAGTGGCA
* *
141191 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCTTCAAAGTCCACGAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATC--TT-TTCAAAGCCCACAAGTCAGTGGCA
141250 A
1 A
141251 TCTCTTCTCA
Statistics
Matches: 104, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
56 31 0.30
57 49 0.47
59 21 0.20
60 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.21
Consensus pattern (56 bp):
ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:141245 original size:31 final size:30
Alignment explanation
Indices: 141111--141300 Score: 113
Period size: 28 Copynumber: 6.4 Consensus size: 30
141101 TGGTAACCTT
* * * *
141111 TCAAAGCCCACAAGTCAGTGGCAAC-CTTC
1 TCAAAGTCCACGAGTCAGTGGCATCTTTTC
* * * *
141140 -AAAAGCCCACAAGTTAGTGGCATCTTTTC
1 TCAAAGTCCACGAGTCAGTGGCATCTTTTC
* * * * * *
141169 -AAAAGCCCACAAGTTAGTGGCAAC-CTTC
1 TCAAAGTCCACGAGTCAGTGGCATCTTTTC
* * *
141197 -AAAAGCCCACAAGTCAGTGGCATCTTTTC
1 TCAAAGTCCACGAGTCAGTGGCATCTTTTC
*
141226 TTCAAAGTCCACGAGTCAGTGGCAATCTCTTC
1 -TCAAAGTCCACGAGTCAGTGGC-ATCTTTTC
* * * *
141258 TCAAAATCCATGACTCAGTGGCATCTCTTAC
1 TCAAAGTCCACGAGTCAGTGGCATCT-TTTC
141289 -CAAAGTCCACGA
1 TCAAAGTCCACGA
141301 CTCTGTGGTG
Statistics
Matches: 135, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
28 46 0.34
29 29 0.21
30 14 0.10
31 39 0.29
32 7 0.05
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (30 bp):
TCAAAGTCCACGAGTCAGTGGCATCTTTTC
Found at i:141286 original size:30 final size:30
Alignment explanation
Indices: 141210--141308 Score: 119
Period size: 31 Copynumber: 3.2 Consensus size: 30
141200 AGCCCACAAG
* *
141210 TCAGTGGCATCTTTTCTTCAAAGTCCACGAG
1 TCAGTGGCATCTCTTC-TCAAAGTCCACGAC
* *
141241 TCAGTGGCAATCTCTTCTCAAAATCCATGAC
1 TCAGTGGC-ATCTCTTCTCAAAGTCCACGAC
141272 TCAGTGGCATCTCTTAC-CAAAGTCCACGAC
1 TCAGTGGCATCTCTT-CTCAAAGTCCACGAC
*
141302 TCTGTGG
1 TCAGTGG
141309 TGCCTTTTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.41
31 28 0.47
32 7 0.12
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (30 bp):
TCAGTGGCATCTCTTCTCAAAGTCCACGAC
Found at i:141356 original size:61 final size:61
Alignment explanation
Indices: 141291--141439 Score: 217
Period size: 61 Copynumber: 2.4 Consensus size: 61
141281 TCTCTTACCA
* * ** *
141291 AAGTCCACGACTCTGTGGTGCCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACTCTTTT
1 AAGTCCACAACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACCCTTTT
* *
141352 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACCCTTTT
*
141413 AGGTCCACAACTCAGTGGCACTCTTTT
1 AAGTCCACAACTCAGTGGCAC-CTTTT
141440 AAGTCCACAA
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
61 74 0.94
62 5 0.06
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (61 bp):
AAGTCCACAACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACCCTTTT
Found at i:141357 original size:27 final size:27
Alignment explanation
Indices: 141325--141466 Score: 158
Period size: 27 Copynumber: 5.0 Consensus size: 27
141315 TTTCTTTTCA
*
141325 AAGTCCACAACTCTGTGGCACTCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTT
141352 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCA-C----TC-TTTT
* *
141385 AAAGTCCACAACTCTGTGGCACCCTTTT
1 -AAGTCCACAACTCCGTGGCACTCTTTT
* *
141413 AGGTCCACAACTCAGTGGCACTCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTT
* *
141440 AAGTCCACAACTCCATGGCACTTTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTT
141467 TCCCTTTTAA
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
27 66 0.67
28 5 0.05
29 1 0.01
32 2 0.02
33 5 0.05
34 19 0.19
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACTCTTTT
Found at i:141404 original size:34 final size:34
Alignment explanation
Indices: 141290--141412 Score: 143
Period size: 34 Copynumber: 3.8 Consensus size: 34
141280 ATCTCTTACC
* ** *
141290 AAAGTCCACGACTCTGTGGTGCCTTTTTCTTTTC
1 AAAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
141324 AAAGTCCACAACTCTGTGGCA-C----TC-TTTT
1 AAAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
*
141352 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
*
141385 AAAGTCCACAACTCTGTGGCACCCTTTT
1 AAAGTCCACAACTCTGTGGCACCTTTTT
141413 AGGTCCACAA
Statistics
Matches: 75, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
27 19 0.25
28 4 0.05
29 2 0.03
32 2 0.03
33 5 0.07
34 43 0.57
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.36
Consensus pattern (34 bp):
AAAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
Found at i:141432 original size:88 final size:89
Alignment explanation
Indices: 141327--141501 Score: 255
Period size: 88 Copynumber: 2.0 Consensus size: 89
141317 TCTTTTCAAA
* * * *
141327 GTCCACAACTCTGTGGCACTCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGT
1 GTCCACAACTCAGTGGCACTCTTTTAAGTCCACAACTCCATGGCACTCTTTTTCCCTTTT-AAGC
*
141390 CCACAACTCTGTGGCACCCTTTTAG
65 CCACAACTCCGTGGCACCCTTTTAG
*
141415 GTCCACAACTCAGTGGCACTCTTTTAAGTCCACAACTCCATGGCACTTTTTTTCCCTTTTAAGCC
1 GTCCACAACTCAGTGGCACTCTTTTAAGTCCACAACTCCATGGCACTCTTTTTCCCTTTTAAGCC
* *
141480 CACACCTCCGTGGCATCCTTTT
66 CACAACTCCGTGGCACCCTTTT
141502 TTCTTGTAAG
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
88 44 0.57
89 28 0.36
90 5 0.06
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.34
Consensus pattern (89 bp):
GTCCACAACTCAGTGGCACTCTTTTAAGTCCACAACTCCATGGCACTCTTTTTCCCTTTTAAGCC
CACAACTCCGTGGCACCCTTTTAG
Found at i:141528 original size:34 final size:33
Alignment explanation
Indices: 141346--141533 Score: 143
Period size: 34 Copynumber: 5.9 Consensus size: 33
141336 TCTGTGGCAC
*
141346 TCTTTTAAGTCCACAACTCCGTGGCACC-TTTT
1 TCTTTTAAGTCCACAACTCCATGGCACCTTTTT
**
141378 TCTTTTTAAAGTCCACAACTCTGTGGCACC-----
1 TC-TTTT-AAGTCCACAACTCCATGGCACCTTTTT
*
141408 -CTTTTAGGTCCACAACT-CAGTGGCA-C-----
1 TCTTTTAAGTCCACAACTCCA-TGGCACCTTTTT
*
141434 TCTTTTAAGTCCACAACTCCATGGCACTTTTTT
1 TCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* * *
141467 TCCCTTTTAAGCCCACACCTCCGTGGCATCCTTTTT
1 T--CTTTTAAGTCCACAACTCCATGGCA-CCTTTTT
*
141503 TCTTGTAAGTCCACAACTCCATGGCACCTTT
1 TCTTTTAAGTCCACAACTCCATGGCACCTTT
141534 AAGTCCAATA
Statistics
Matches: 128, Mismatches: 14, Indels: 27
0.76 0.08 0.16
Matches are distributed among these distances:
26 1 0.01
27 37 0.29
28 6 0.05
29 1 0.01
32 2 0.02
33 10 0.08
34 42 0.33
35 22 0.17
36 7 0.05
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.35
Consensus pattern (33 bp):
TCTTTTAAGTCCACAACTCCATGGCACCTTTTT
Found at i:141603 original size:49 final size:49
Alignment explanation
Indices: 141530--142223 Score: 462
Period size: 49 Copynumber: 14.8 Consensus size: 49
141520 TCCATGGCAC
* * *
141530 CTTTAAGTCCAATATTGCTCGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * *
141579 CTTTAAGACCAATGTCGCTAGCCTTGAATCAACACATTAGCA-C-----
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
141622 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC-TTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
141670 CTTTAAGACCCATGTCGCTAGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
141713 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC-TTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
141761 CTTTAAGACCAATGTCACTGGCCTTGAATCAACACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * *
141803 ---TGAGCCCAATATCGCTAGCCTTGAATTAGCATATTGGCACCTTGT-T
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-TAT
* ** * *
141849 C-CTAAAACCAATGTCGCTGGCCTTAAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
141890 ---TAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTAGCACCTTCAT
1 CTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * *
141936 CTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT---TAT
* ** *
141988 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGGCATGTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
142037 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * * * *
142086 TTTTAAGTCCGATATCGTTGGCCTTGAATCAACATATTGGCATCTTTAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
142135 CATTCCTAAGCCCAATGTCGCTGGCCTT-ATCTCAGCACATTGGCA--TTCT-T
1 C-TT--TAAGTCCAATATCGCTGGCCTTGA-ATCAGCACATTGGCACCTT-TAT
* * * * *
142185 CTTCAAGTCTAATGTCGCTGGCCATGAATCAGTACATTG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
142224 TCATTCTTTG
Statistics
Matches: 517, Mismatches: 86, Indels: 86
0.75 0.12 0.12
Matches are distributed among these distances:
38 2 0.00
39 57 0.11
42 2 0.00
43 75 0.15
44 2 0.00
45 3 0.01
47 29 0.06
48 103 0.20
49 163 0.32
50 7 0.01
51 2 0.00
52 72 0.14
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
Found at i:141716 original size:91 final size:91
Alignment explanation
Indices: 141524--142179 Score: 659
Period size: 91 Copynumber: 7.1 Consensus size: 91
141514 CACAACTCCA
* *
141524 TGGCACCTTTAAGTCCAATATTGCTCGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACC
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAGACC
* *
141589 AATGTCGCTAGCCTTGAATCAACACAT
65 AATGTCGCTGGCCTTGAATCAGCACAT
* * *
141616 TAGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCC
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCA
*
141681 ATGTCGCTAGCCTTGAATCAGCACAT
66 ATGTCGCTGGCCTTGAATCAGCACAT
*
141707 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCA
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCA
* *
141772 ATGTCACTGGCCTTGAATCAACACAT
66 ATGTCGCTGGCCTTGAATCAGCACAT
* * * * * *
141798 TGGCA----TGAGCCCAATATCGCTAGCCTTGAATTAGCATATTGGCACCTTGT-TCCTAAAACC
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTATCT-TTAAGACC
*
141858 AATGTCGCTGGCCTTAAATCAGCACAT
65 AATGTCGCTGGCCTTGAATCAGCACAT
* * *
141885 TGGCA----TAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGAC
1 TGGCACCTTTAAGTCC-AATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGAC
* *
141945 CGATGTCGTTGGCCTTGAATCAGCACAT
64 CAATGTCGCTGGCCTTGAATCAGCACAT
* * * **
141973 TGGCACCTTAACCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGGCATGTTCATC
1 TGG---C---A-C--CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-ATC
* * *
142038 TTTAAGTCCGATATCGCTGGCCTTGAATCAGCACAT
56 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
* * * * * *
142074 TGGCACCTTTATTTTTAAGTCCGATATCGTTGGCCTTGAATCAACATATTGGCATCTTTAACATT
1 TGGCACC------TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA-CCTTATC-TT
* *
142139 CCTAAGCCCAATGTCGCTGGCCTT-ATCTCAGCACAT
58 --TAAGACCAATGTCGCTGGCCTTGA-ATCAGCACAT
142175 TGGCA
1 TGGCA
142180 TTCTTCTTCA
Statistics
Matches: 484, Mismatches: 51, Indels: 49
0.83 0.09 0.08
Matches are distributed among these distances:
86 3 0.01
87 112 0.23
88 34 0.07
89 1 0.00
91 130 0.27
92 48 0.10
94 2 0.00
95 1 0.00
98 39 0.08
99 4 0.01
100 1 0.00
101 107 0.22
102 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (91 bp):
TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCA
ATGTCGCTGGCCTTGAATCAGCACAT
Found at i:141759 original size:21 final size:20
Alignment explanation
Indices: 141691--141759 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 20
141681 ATGTCGCTAG
141691 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCA-ATTGGCA
* *
141712 CCTTTAAGTC--CAATATCGCTA
1 CCTTGAA-TCAGCAAT-TGGC-A
141733 GCCTTGAATCAGCATATTGGCA
1 -CCTTGAATCAGCA-ATTGGCA
141755 CCTTG
1 CCTTG
141760 TCTTTAAGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
19 2 0.05
20 5 0.14
21 14 0.38
22 9 0.24
23 5 0.14
24 2 0.05
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (20 bp):
CCTTGAATCAGCAATTGGCA
Found at i:142072 original size:101 final size:98
Alignment explanation
Indices: 141897--142216 Score: 331
Period size: 101 Copynumber: 3.2 Consensus size: 98
141887 GCATAAGCCT
* * * *
141897 AATATCGTTGGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGACCGATGTCGTTGGCCTTG
1 AATATCGTTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCGATATCGCTGGCCTTG
141962 AATCAGCACATTGGCACCTTAACCATCTTTAAGTCC
66 AATCAGCACATTGGCACCTT---CATCTTTAAGTCC
* * * * *
141998 AATATCGCTGGCCTTGAATTAGCACATTGGCATGTTCATCTTTAAGTCCGATATCGCTGGCCTTG
1 AATATCGTTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCGATATCGCTGGCCTTG
* *
142063 AATCAGCACATTGGCACCTTTATTTTTAAGTCC
66 AATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * * * * *
142096 GATATCGTTGGCCTTGAATCAACATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGCTGGCC
1 AATATCGTTGGCCTTGAATCAGCATATTGGCATCTTCATC-TT--TAAGACCGATATCGCTGGCC
* * * *
142161 TT-ATCTCAGCACATTGGCA--TTCTTCTTCAAGTCT
63 TTGA-ATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
142195 AATGTCGCTGGCCATGAATCAG
1 AATATCGTTGGCCTTGAATCAG
142217 TACATTGTCA
Statistics
Matches: 182, Mismatches: 33, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
98 43 0.24
99 29 0.16
100 1 0.01
101 109 0.60
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (98 bp):
AATATCGTTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCGATATCGCTGGCCTTG
AATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:142172 original size:150 final size:147
Alignment explanation
Indices: 141897--142223 Score: 390
Period size: 150 Copynumber: 2.2 Consensus size: 147
141887 GCATAAGCCT
* * * *
141897 AATATCGTTGGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGACCGATGTCGTTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATATCGTTGGCCTTG
* * *
141962 AATCAGCACATTGGCACCTTAACCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTG
66 AATCAACACATTGGCACCTTAACCATCTCTAAGCCCAATATCGCTGGCCTT-AATTAGCACATTG
*
142027 GCATGTTCATCTTTAAGTCC
130 GCA--TTCATCTTCAAGTCC
* * * *
142047 GATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTATTTTTAAGTCCGATATCGTTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATATCGTTGGCCTTG
* * *
142112 AATCAACATATTGGCATCTTTAA-CAT-TCCTAAGCCCAATGTCGCTGGCCTT-ATCTCAGCACA
66 AATCAACACATTGGCA-CCTTAACCATCT-CTAAGCCCAATATCGCTGGCCTTAAT-T-AGCACA
* *
142174 TTGGCATTCTTCTTCAAGTCT
127 TTGGCATTCATCTTCAAGTCC
* * *
142195 AATGTCGCTGGCCATGAATCAGTACATTG
1 AATATCGCTGGCCTTGAATCAGCACATTG
142224 TCATTCTTTG
Statistics
Matches: 152, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
148 39 0.26
149 2 0.01
150 106 0.70
151 5 0.03
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (147 bp):
AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATATCGTTGGCCTTG
AATCAACACATTGGCACCTTAACCATCTCTAAGCCCAATATCGCTGGCCTTAATTAGCACATTGG
CATTCATCTTCAAGTCC
Found at i:142981 original size:13 final size:13
Alignment explanation
Indices: 142963--142987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
142953 ACATGAGTGT
142963 TGTATCAATACAA
1 TGTATCAATACAA
142976 TGTATCAATACA
1 TGTATCAATACA
142988 GAGCTACCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
TGTATCAATACAA
Found at i:143042 original size:20 final size:20
Alignment explanation
Indices: 143013--143067 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
143003 CTACCAAGGA
*
143013 AATGTGTCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
143033 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
143053 TTTGTATCGATACAT
1 AATGTATCGATACAT
143068 CTGGGAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:146041 original size:30 final size:30
Alignment explanation
Indices: 146007--146066 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
145997 CTTGGTCAAG
*
146007 GTATGATAGGTAGGTCAAGTTAGCAATAGT
1 GTATGATAGGTAGGCCAAGTTAGCAATAGT
* * *
146037 GTATGGTGGGTAGGCCAAGTTAGCAGTAGT
1 GTATGATAGGTAGGCCAAGTTAGCAATAGT
146067 CCAAGTTCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.08, G:0.35, T:0.28
Consensus pattern (30 bp):
GTATGATAGGTAGGCCAAGTTAGCAATAGT
Found at i:147159 original size:71 final size:71
Alignment explanation
Indices: 147075--147217 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 71
147065 ATCATGTCCA
*
147075 TGCCTTACATAAAGAAAGGCCAAAAGGCAATCATGA-CAAGTAGAGATGATGGTGGGCTCATTTA
1 TGCCTCACATAAAGAAAGGCCAAAAGGCAATCATGACCAA-TAGAGATGATGGTGGGCTCATTTA
147139 GATTTGG
65 GATTTGG
* * * * * *
147146 TGCCTCACATAAAGAAAGGCCATAAGGTAGTCATGACCTATAGCGATGATGGTGGGTTCATTTAG
1 TGCCTCACATAAAGAAAGGCCAAAAGGCAATCATGACCAATAGAGATGATGGTGGGCTCATTTAG
147211 ATTTGG
66 ATTTGG
147217 T
1 T
147218 ACTTGTGGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
71 62 0.97
72 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (71 bp):
TGCCTCACATAAAGAAAGGCCAAAAGGCAATCATGACCAATAGAGATGATGGTGGGCTCATTTAG
ATTTGG
Found at i:159041 original size:21 final size:21
Alignment explanation
Indices: 159017--159056 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
159007 TAGAAGGTTC
159017 CAAGAGTCAGTTACACGTGGT
1 CAAGAGTCAGTTACACGTGGT
*
159038 CAAGATTCAGTTACACGTG
1 CAAGAGTCAGTTACACGTG
159057 ATGAATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (21 bp):
CAAGAGTCAGTTACACGTGGT
Found at i:166534 original size:29 final size:30
Alignment explanation
Indices: 166501--166564 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
166491 TATATTTTTA
166501 CTAAAATTTTAA-AAATTACTATTTAATCC
1 CTAAAATTTTAATAAATTACTATTTAATCC
* * * * *
166530 CTAAACTTTTAATAATTTTCTTTTTAGTCC
1 CTAAAATTTTAATAAATTACTATTTAATCC
166560 CTAAA
1 CTAAA
166565 TGTCTATACA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.45
Consensus pattern (30 bp):
CTAAAATTTTAATAAATTACTATTTAATCC
Found at i:167401 original size:20 final size:20
Alignment explanation
Indices: 167375--167428 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
167365 ATTTTCACTA
167375 TTTTTTTCTTTTTTTCT-TC
1 TTTTTTTCTTTTTTTCTCTC
167394 TTTCTTTTCTTTCTTTTCTCTC
1 TTT-TTTTCTTT-TTTTCTCTC
167416 TTTTTTT-TTTTTT
1 TTTTTTTCTTTTTT
167429 GCTGAGTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
19 6 0.19
20 11 0.34
21 10 0.31
22 5 0.16
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTTTTCTTTTTTTCTCTC
Found at i:167426 original size:16 final size:16
Alignment explanation
Indices: 167383--167426 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
167373 TATTTTTTTC
* *
167383 TTTTTTTCTTCTTTCT
1 TTTTTTTTTTCTCTCT
167399 TTTCTTTCTTTTCTCTCT
1 TTT-TTT-TTTTCTCTCT
167417 TTTTTTTTTT
1 TTTTTTTTTT
167427 TTGCTGAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 7 0.29
17 6 0.25
18 11 0.46
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTTCTCTCT
Found at i:168721 original size:167 final size:166
Alignment explanation
Indices: 168422--168870 Score: 519
Period size: 167 Copynumber: 2.7 Consensus size: 166
168412 TTTTTAAAAA
* * * **
168422 ATAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAG----ATC-CCCCTAAAGAAAAT
1 ATAAATAATAATATTTAATGAATTTTAAAAATTAAAAGCCAAGAAAAATCTATCC-AAA-AAAAT
* * * * * ** *
168482 TACAGAGTAAAAAACTTCATATTTTGGAAATA-GAGAAATTTCGAGG-AAAAAT-GAAAAACTTA
64 TACAGAATAGAAAACTCCGTATTTTAGAAATAGGA-AAATTTTAAGGAAAAAATAAAAAAACTTA
168544 TGAAAATGAATGAATTTTTAAAAAGTGATTTAATATGA-
128 TGAAAATGAATGAATTTTTAAAAAGTGATTTAATATGAC
168582 AGTAAATAATAATATTTAATGAATTTTAAAAATTGAAAA-CCAAGAAAAATCTATCCAAAAAAAT
1 A-TAAATAATAATATTTAATGAATTTTAAAAATT-AAAAGCCAAGAAAAATCTATCCAAAAAAA-
*
168646 TTA-TGAAATAGAAAACTCCGTATTTTAGAAATAGGAAAATTTTAAGGAAAAAATAAAAAAACTC
63 TTACAG-AATAGAAAACTCCGTATTTTAGAAATAGGAAAATTTTAAGGAAAAAATAAAAAAACT-
*
168710 T-TGAAAATGAATGAATTTTTAAAAATTGATTTAATATGAC
126 TATGAAAATGAATGAATTTTTAAAAAGTGATTTAATATGAC
* * *
168750 ATAAATAATAATATTTGATGAATTTTAAAAATTAAAAGCCAAGAAAAATCTCTCGAAAAAAATTA
1 ATAAATAATAATATTTAATGAATTTTAAAAATTAAAAGCCAAGAAAAATCTATCCAAAAAAATTA
* * * * *
168815 CAGAGTAGAAAACTCTGTA-TTTCGAAAATAGGAAAATTTTTAGGAAAAATTAAAAA
66 CAGAATAGAAAACTCCGTATTTTAG-AAATAGGAAAATTTTAAGGAAAAAATAAAAA
168871 TGAATAAAAA
Statistics
Matches: 249, Mismatches: 23, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
160 1 0.00
161 35 0.14
162 4 0.02
164 5 0.02
165 44 0.18
166 60 0.24
167 98 0.39
168 2 0.01
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.29
Consensus pattern (166 bp):
ATAAATAATAATATTTAATGAATTTTAAAAATTAAAAGCCAAGAAAAATCTATCCAAAAAAATTA
CAGAATAGAAAACTCCGTATTTTAGAAATAGGAAAATTTTAAGGAAAAAATAAAAAAACTTATGA
AAATGAATGAATTTTTAAAAAGTGATTTAATATGAC
Found at i:170118 original size:84 final size:83
Alignment explanation
Indices: 170015--170204 Score: 204
Period size: 84 Copynumber: 2.3 Consensus size: 83
170005 ACCAACAAAC
* * * * * *
170015 CAACACAGGATAAACGAGTTTACCAGGCACTAAAATGATAGGTAAACAAGGGATGGAA-GGTTGA
1 CAACAAAGGGTAAAGGAGTTTACCAGGCACTAAAATGACAAGTAAACAAGGGAT-AAATGGTTGA
* * **
170079 CTAGGGCTGAACCGTTAAGT
65 CCAAGG-TGAACCAATAAGT
** * * *
170099 CAACAAAGGGTAAAGGAGTTTACTGGGCACTAAACTGCCAAGTAAACAAGTGATAAATGGTTGAC
1 CAACAAAGGGTAAAGGAGTTTACCAGGCACTAAAATGACAAGTAAACAAGGGATAAATGGTTGAC
170164 CAAGGTGAACCAATAAGT
66 CAAGGTGAACCAATAAGT
*
170182 CAATAAAGGGTAAAGGA-TTTACC
1 CAACAAAGGGTAAAGGAGTTTACC
170205 CGAGACTAAG
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
82 5 0.06
83 29 0.33
84 54 0.61
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.19
Consensus pattern (83 bp):
CAACAAAGGGTAAAGGAGTTTACCAGGCACTAAAATGACAAGTAAACAAGGGATAAATGGTTGAC
CAAGGTGAACCAATAAGT
Found at i:170583 original size:48 final size:48
Alignment explanation
Indices: 170462--170804 Score: 294
Period size: 48 Copynumber: 7.1 Consensus size: 48
170452 GTTCTATCAT
* * * *
170462 CAATATAGTCAAACGAA-GG-TGCAAAGAGTTTAACCAAGCCCTAACAC
1 CAATACAGTCAAAC-AAGGGATGAAAAGAGTTTAACTAGGCCCTAACAC
* ** * **
170509 CAATGCAGTCAAATGAGGGATAAAAAGAGTTTAACTAGGCCCTAATGC
1 CAATACAGTCAAACAAGGGATGAAAAGAGTTTAACTAGGCCCTAACAC
* * * * * *
170557 TAATATAGTCAAACAAGGCATGAAAAGAGTTTGATTAGGCCCTAACTC
1 CAATACAGTCAAACAAGGGATGAAAAGAGTTTAACTAGGCCCTAACAC
* * ** *
170605 CAATGCAATCAAATGAGGGATGAAAAGAGTTTGACTAGGCCCTAACAC
1 CAATACAGTCAAACAAGGGATGAAAAGAGTTTAACTAGGCCCTAACAC
* * * * *
170653 CAATATAGTCAAACAAAGGATGAAAAGAGTTTGACCAGGCCTTAACAC
1 CAATACAGTCAAACAAGGGATGAAAAGAGTTTAACTAGGCCCTAACAC
** * **
170701 CAATACAGTCAAATGAGGGATGAAAAGAGTTTGACCTAGGCCCTAATGC
1 CAATACAGTCAAACAAGGGATGAAAAGAGTTT-AACTAGGCCCTAACAC
** * * * * *
170750 CAATACAGTCAAATGAGGGATTAATGAAGAGTTTGACCAGGTCCTAACGC
1 CAATACAGTCAAACAAGGGATGAA--AAGAGTTTAACTAGGCCCTAACAC
170800 CAATA
1 CAATA
170805 TGGTTAAACG
Statistics
Matches: 237, Mismatches: 54, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
46 1 0.00
47 13 0.05
48 166 0.70
49 33 0.14
50 16 0.07
51 8 0.03
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (48 bp):
CAATACAGTCAAACAAGGGATGAAAAGAGTTTAACTAGGCCCTAACAC
Found at i:170584 original size:96 final size:96
Alignment explanation
Indices: 170462--170803 Score: 427
Period size: 96 Copynumber: 3.5 Consensus size: 96
170452 GTTCTATCAT
* * * *
170462 CAATATAGTCAAACGAAGG-TGCAAAGAGTTTAACCAAGCCCTAACACCAATGCAGTCAAATGAG
1 CAATATAGTCAAACAAAGGATGAAAAGAGTTTGACCAGGCCCTAACACCAATGCAGTCAAATGAG
*
170526 GGATAAAAAGAGTTTAACTAGGCCCTAATGC
66 GGATGAAAAGAGTTTAACTAGGCCCTAATGC
* ** * *
170557 TAATATAGTCAAAC-AAGGCATGAAAAGAGTTTGATTAGGCCCTAACTCCAATGCAATCAAATGA
1 CAATATAGTCAAACAAAGG-ATGAAAAGAGTTTGACCAGGCCCTAACACCAATGCAGTCAAATGA
* **
170621 GGGATGAAAAGAGTTTGACTAGGCCCTAACAC
65 GGGATGAAAAGAGTTTAACTAGGCCCTAATGC
* *
170653 CAATATAGTCAAACAAAGGATGAAAAGAGTTTGACCAGGCCTTAACACCAATACAGTCAAATGAG
1 CAATATAGTCAAACAAAGGATGAAAAGAGTTTGACCAGGCCCTAACACCAATGCAGTCAAATGAG
*
170718 GGATGAAAAGAGTTTGACCTAGGCCCTAATGC
66 GGATGAAAAGAGTTT-AACTAGGCCCTAATGC
* ** * * * *
170750 CAATACAGTCAAATGAGGGATTAATGAAGAGTTTGACCAGGTCCTAACGCCAAT
1 CAATATAGTCAAACAAAGGATGAA--AAGAGTTTGACCAGGCCCTAACACCAAT
170804 ATGGTTAAAC
Statistics
Matches: 210, Mismatches: 31, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
94 4 0.02
95 13 0.06
96 133 0.63
97 35 0.17
99 25 0.12
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (96 bp):
CAATATAGTCAAACAAAGGATGAAAAGAGTTTGACCAGGCCCTAACACCAATGCAGTCAAATGAG
GGATGAAAAGAGTTTAACTAGGCCCTAATGC
Found at i:170647 original size:144 final size:145
Alignment explanation
Indices: 170484--170804 Score: 376
Period size: 144 Copynumber: 2.2 Consensus size: 145
170474 ACGAAGGTGC
* * * ** * *
170484 AAAGAGTTTAACCAAGCCCTAACACCAATGCAGTCAAATGAGGGATAAAAAGAGTTTAACTAGGC
1 AAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACAAAGGATAAAAAGAGTTTAACCAGGC
** * * * *
170549 CCTAATGCTAATATAGTCAAACAAGGCATGAAAAGAGTTTGA-TTAGGCCCTAACT-CCAATGCA
66 CCTAACACCAATACAGTCAAACAAGGCATGAAAAGAGTTTGACCTAGGCCCTAA-TGCCAATACA
170612 ATCAAATGAGGGATGA
130 ATCAAATGAGGGATGA
* * * *
170628 AAAGAGTTTGACTAGGCCCTAACACCAATATAGTCAAACAAAGGATGAAAAGAGTTTGACCAGGC
1 AAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACAAAGGATAAAAAGAGTTTAACCAGGC
* ** * *
170693 CTTAACACCAATACAGTCAAATGAGGGATGAAAAGAGTTTGACCTAGGCCCTAATGCCAATACAG
66 CCTAACACCAATACAGTCAAACAAGGCATGAAAAGAGTTTGACCTAGGCCCTAATGCCAATACAA
*
170758 TCAAATGAGGGATTA
131 TCAAATGAGGGATGA
* *
170773 ATGAAGAGTTTGACCAGGTCCTAACGCCAATA
1 A--AAGAGTTTGACCAGGCCCTAACACCAATA
170805 TGGTTAAACG
Statistics
Matches: 147, Mismatches: 26, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
144 89 0.61
145 32 0.22
147 26 0.18
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (145 bp):
AAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACAAAGGATAAAAAGAGTTTAACCAGGC
CCTAACACCAATACAGTCAAACAAGGCATGAAAAGAGTTTGACCTAGGCCCTAATGCCAATACAA
TCAAATGAGGGATGA
Found at i:176324 original size:20 final size:20
Alignment explanation
Indices: 176282--176335 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
176272 TTCAATATTT
*
176282 TGTATCGGTACAATAAGGCAA
1 TGTATCGATAC-ATAAGGCAA
176303 TGTATCGATACATAAGTG-AA
1 TGTATCGATACATAAG-GCAA
*
176323 TGTATCAATACAT
1 TGTATCGATACAT
176336 GCTTGAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATAAGGCAA
Found at i:185813 original size:51 final size:51
Alignment explanation
Indices: 185747--185865 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
185737 CGAAAATAAT
* * *
185747 AGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAGAAATAAGGCC
1 AGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCC
* * * * *
185798 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGTC
1 AGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCC
185849 AGGGTTGGAGTATCCCC
1 AGGGTTGGAGTATCCCC
185866 TCAAAAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (51 bp):
AGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCC
Found at i:185922 original size:28 final size:28
Alignment explanation
Indices: 185850--185924 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
185840 AATAAAGTCA
*
185850 GGGTTGGAGTATCCCCTCA-AAAATAACG
1 GGGTTGGAGTATCCCC-GATAAAATAACG
*
185878 GGGTTGGAGTATCCCCGATGAAATAACG
1 GGGTTGGAGTATCCCCGATAAAATAACG
185906 GGGTTGGAGTATCCCCGAT
1 GGGTTGGAGTATCCCCGAT
185925 TATGAAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCGATAAAATAACG
Found at i:185982 original size:51 final size:50
Alignment explanation
Indices: 185908--186074 Score: 235
Period size: 51 Copynumber: 3.3 Consensus size: 50
185898 AAATAACGGG
* * *
185908 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAA-CCGA
*
185959 GTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
* * * *
186009 GATTGGAGAATCCACGATTGCGAAAAATTGATGTTTTAAAAATAAAACCGA
1 G-TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
186060 TGTTGGAGTATCCCC
1 -GTTGGAGTATCCCC
186075 TCAGAAATAA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
50 4 0.04
51 98 0.95
52 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
Found at i:186015 original size:158 final size:156
Alignment explanation
Indices: 185713--186021 Score: 372
Period size: 158 Copynumber: 2.0 Consensus size: 156
185703 TTTTGAAAAT
* *
185713 AAAATAAGGGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATC
1 AAAATAAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAATC
** * * * *
185778 GATGCTTTAGAAATAAGGCCGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAAT
66 GATGCTTTAGAAATAAAACCGGAGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAAT
** * *
185843 AAAGTCAGGGTTGGAGTATCCCCTCA
131 AAAACCAGGATTGGAGAATCCCCTCA
*
185869 AAAATAACGGGGTTGGAGTAT-CCC-CGATGAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
1 AAAATAA--GGGTTGGAGTATCCCCTCGA--AAATAACAGGGTTGGAGTATCCCCGATTATGAAA
* * * * ** *
185932 AATTGATGTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAG
62 AATCGATGCTTTAGAAATAAAACCGGAGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAG
185997 AAATAAAACC-GAGATTGGAGAATCC
127 AAATAAAACCAG-GATTGGAGAATCC
186022 ACGATTGCGA
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
156 10 0.08
157 4 0.03
158 114 0.89
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27
Consensus pattern (156 bp):
AAAATAAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAATC
GATGCTTTAGAAATAAAACCGGAGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAAT
AAAACCAGGATTGGAGAATCCCCTCA
Found at i:188558 original size:49 final size:50
Alignment explanation
Indices: 188484--188617 Score: 191
Period size: 50 Copynumber: 2.7 Consensus size: 50
188474 AAAAATGCCT
* * *
188484 GAATGTATTGATACATTGCAA-AATGTATCGGTACATCTAGGT-AAACCCA
1 GAATGTATCGATACAATG-AACAATGTATCGATACATCTAGGTAAAACCCA
*
188533 GAATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCA
1 GAATGTATCGATACAATGAACAATGTATCGATACATCTAGGTAAAACCCA
* *
188583 TAATGTATCGATACAATTAACAATGTATCGATACA
1 GAATGTATCGATACAATGAACAATGTATCGATACA
188618 AAATATAAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
48 2 0.03
49 35 0.45
50 40 0.52
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (50 bp):
GAATGTATCGATACAATGAACAATGTATCGATACATCTAGGTAAAACCCA
Found at i:189714 original size:20 final size:21
Alignment explanation
Indices: 189670--189720 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
189660 GCCAATGACT
**
189670 TGTATCGATACATTTTTTCCA
1 TGTATCGATACATTTAGTCCA
189691 -GTATCGATACATTTAGT-CA
1 TGTATCGATACATTTAGTCCA
189710 TGTATCGATAC
1 TGTATCGATAC
189721 TGTGCAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (21 bp):
TGTATCGATACATTTAGTCCA
Found at i:190386 original size:29 final size:29
Alignment explanation
Indices: 190344--190406 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
190334 TTTAATCACA
190344 TATTTCTTACTCCCCCTTAATCATAAATT
1 TATTTCTTACTCCCCCTTAATCATAAATT
190373 TATTTCTTACTCCCCCTTAATCATAAATT
1 TATTTCTTACTCCCCCTTAATCATAAATT
190402 TATTT
1 TATTT
190407 ACACAGATTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (29 bp):
TATTTCTTACTCCCCCTTAATCATAAATT
Found at i:190402 original size:25 final size:25
Alignment explanation
Indices: 190335--190402 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 25
190325 CAATAAATTT
* *
190335 TTAATCACATATTTCTTACTCCCCC
1 TTAATCATAAATTTCTTACTCCCCC
190360 TTAATCATAAATTTATTTCTTACTCCCCC
1 TTAATCAT-AA---ATTTCTTACTCCCCC
190389 TTAATCATAAATTT
1 TTAATCATAAATTT
190403 ATTTACACAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 11 0.30
26 1 0.03
28 2 0.05
29 23 0.62
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (25 bp):
TTAATCATAAATTTCTTACTCCCCC
Found at i:191945 original size:20 final size:21
Alignment explanation
Indices: 191916--191956 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
191906 TGTTTTTGAT
191916 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
191935 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
191957 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:196658 original size:3 final size:3
Alignment explanation
Indices: 196650--196689 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
196640 TCTGAGTCAC
* *
196650 CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
196690 GTCCTTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.38
Consensus pattern (3 bp):
CAT
Found at i:198186 original size:13 final size:13
Alignment explanation
Indices: 198168--198192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
198158 CATTTTATGG
198168 TGTATCGATACAA
1 TGTATCGATACAA
198181 TGTATCGATACA
1 TGTATCGATACA
198193 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:198208 original size:32 final size:33
Alignment explanation
Indices: 198145--198212 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
198135 CGTTACAAGC
**
198145 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
*
198178 CAATGTATCGATACATACTGT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
198210 CAA
1 CAA
198213 GTTTAGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:198270 original size:20 final size:20
Alignment explanation
Indices: 198245--198295 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
198235 CCAATGACTT
**
198245 GTATCGATACATTTTTTCAA
1 GTATCGATACATTTAGTCAA
*
198265 GTATCGATACATTTAGTCAT
1 GTATCGATACATTTAGTCAA
198285 GTATCGATACA
1 GTATCGATACA
198296 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (20 bp):
GTATCGATACATTTAGTCAA
Found at i:198301 original size:13 final size:13
Alignment explanation
Indices: 198283--198307 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
198273 ACATTTAGTC
198283 ATGTATCGATACA
1 ATGTATCGATACA
198296 ATGTATCGATAC
1 ATGTATCGATAC
198308 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:199168 original size:42 final size:43
Alignment explanation
Indices: 199122--199250 Score: 136
Period size: 42 Copynumber: 3.0 Consensus size: 43
199112 AAGGGAAACG
199122 AAATGCATCCTGCTCTTTGAGGATAAAGGAAA-AAGGAAAATA
1 AAATGCATCCTGCTCTTTGAGGATAAAGGAAACAAGGAAAATA
* * * * *
199164 AAATGCGTCCTGCTTTTTGAGAACTAGAAGGGAACAGAAGG-AAATG
1 AAATGCATCCTGCTCTTTGAGGA-TA-AA-GGAA-ACAAGGAAAATA
** *
199210 ACGTGCATCCTGCTCTTTGAGGACAAAGGAAACAAGGAAAA
1 AAATGCATCCTGCTCTTTGAGGATAAAGGAAACAAGGAAAA
199251 AGCATCCTAC
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
42 25 0.36
43 9 0.13
44 4 0.06
45 5 0.07
46 23 0.33
47 4 0.06
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (43 bp):
AAATGCATCCTGCTCTTTGAGGATAAAGGAAACAAGGAAAATA
Found at i:199395 original size:60 final size:60
Alignment explanation
Indices: 199278--199462 Score: 255
Period size: 60 Copynumber: 3.1 Consensus size: 60
199268 GGCAAAGAAG
* * *
199278 AAAAAGAAAAGGCATCATGTTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCATGTTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTGGGCTTT
* * * * *
199339 AAAAGGAAAAGGCGTCCTGTTCTTTGAGGACTGAAGGTGCCACTAGCTTTTGTGGGCTGT
1 AAAAAGAAAAGGCGTCATGTTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT
* *
199399 AAAAAGAAAAGGCGTCTTGCTT-TTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTC
1 AAAAAGAAAAGGCGTCATG-TTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT
199459 AAAA
1 AAAA
199463 GGCGTCTAGC
Statistics
Matches: 109, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
60 77 0.71
61 32 0.29
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (60 bp):
AAAAAGAAAAGGCGTCATGTTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT
Found at i:199483 original size:54 final size:55
Alignment explanation
Indices: 199284--199489 Score: 164
Period size: 60 Copynumber: 3.5 Consensus size: 55
199274 GAAGAAAAAG
* * * * * *
199284 AAAAGGCATCATGTTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AAAAGGCGTC-TGCTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTGGGCTGT---A-C
* * * *
199345 AAAAGGCGTCCTGTTCTTTGAGGACTGAAGGTGCCACTAGCTTTTGTGGGCTGTAAAAAG
1 AAAAGGCGT-CTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTGT----AC
*
199405 AAAAGGCGTCTTGCTTTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCT-T-C
1 AAAAGGCGTC-TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTGTAC
* *
199459 AAAAGGCGTCTAGCTCTTTAAGGACTAAAGG
1 AAAAGGCGTCT-GCTCTTTGAGGACTGAAGG
199490 GCAAAAAGAG
Statistics
Matches: 127, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
53 1 0.01
54 26 0.20
59 2 0.02
60 69 0.54
61 28 0.22
62 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (55 bp):
AAAAGGCGTCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTGTAC
Found at i:199598 original size:61 final size:60
Alignment explanation
Indices: 199493--200083 Score: 557
Period size: 55 Copynumber: 10.1 Consensus size: 60
199483 CTAAAGGGCA
*
199493 AAAAGAG-AGAGCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGCGTGGGCTTT
1 AAAAGAGAAG-GCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT
* *
199553 AAAAGGAGAAGGCGTCCTGCTCTTTGAAGG-CTGGGAAGTGCCACCAACTTTTGTGGGCTTT
1 AAAA-GAGAAGGCGTCCTGCTCTTTG-AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
* *
199614 ---A-AG-AGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
* * ** *
199669 ----GA-AAGGCGTCCTGCTCTCTAAGGACTCAAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
199724 ----GA-AAGGCATCCTACTCTTTAAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * * * *
199779 GCAAAA-AGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTGGCTCCAACTCGAGTGGTCTTT
1 --AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
** * * * * *
199840 AAAAGGAGAAATCATCATGCTCTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAA-GAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
199901 ----GA-ATGGCGTCCTGCTCTTTGAGGACTGAAAAAT-CCACAAACTTGTGTGGGCTTT
1 AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
* *
199955 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAA-GAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
200017 AAAAGGAAAAGGTGTCCTGCTCTTTAAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAA-GAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT
200079 AAAAG
1 AAAAG
200084 GCATCCTACT
Statistics
Matches: 457, Mismatches: 50, Indels: 47
0.82 0.09 0.08
Matches are distributed among these distances:
54 23 0.05
55 164 0.36
56 4 0.01
58 1 0.00
59 6 0.01
60 30 0.07
61 140 0.31
62 89 0.19
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (60 bp):
AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:199638 original size:155 final size:153
Alignment explanation
Indices: 199350--199640 Score: 365
Period size: 155 Copynumber: 1.9 Consensus size: 153
199340 AAAGGAAAAG
* * * **
199350 GCGTCCTGTTCTTTGAGGACTGAAGGTGCCACTAGCTTTTGTGGGCTGTAAAAAGAAAAGGCGTC
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGCGTGGGCTGTAAAAAGAAAAGGCGTC
* * *
199415 TTGCTTTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTCAAAAGGCGTCTAGCTCTTTAA
66 CTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGCGTCTAGCTCTTTAA
199480 GGACTAAAGGGCAAAAAGAGAGA
131 GGACTAAAGGGCAAAAAGAGAGA
* * *
199503 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGCGTGGGCTTTAAAAGGAGAAGGCG
1 GCGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGCGTGGGCTGTAAAAAGAAAAGGCG
* * *
199567 TCCTGCTCTTTGAAGG-CTGGGAA-GTGCCACCAACTTTTGTGGGCTTTAAGAGGCGTCCT-GCT
64 TCCTGCTCTTTG-AGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGCGT-CTAGCT
*
199629 CTTTGAGGACTA
125 CTTTAAGGACTA
199641 GAAAATGCCA
Statistics
Matches: 117, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
153 20 0.17
154 43 0.37
155 49 0.42
156 5 0.04
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.26
Consensus pattern (153 bp):
GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGCGTGGGCTGTAAAAAGAAAAGGCGTC
CTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGCGTCTAGCTCTTTAA
GGACTAAAGGGCAAAAAGAGAGA
Found at i:200109 original size:116 final size:114
Alignment explanation
Indices: 199506--200109 Score: 611
Period size: 116 Copynumber: 5.2 Consensus size: 114
199496 AGAGAGAGCG
* *
199506 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGCGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GA-AAGGCGTCCT
** * * *
199571 GCTCTTTGAAGG-CTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAGAGGCG
64 GCTCTTT-AAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
199622 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----GAAAGGCGTCCTGC
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGC
* * * *
199683 TCTCTAAGGACTCAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
66 TCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * * * *
199732 TCCTACTCTTTAAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAA-GCATCC
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT---AAAAGAAAGGCGTCC
* * * * * * * *
199796 TGCTCTTTGAGGACTGGAAGGTGGCTCCAACTCGAGTGGTCTTTAAAAGGAGAAATCA
63 TGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G-G----CA
* * * *
199854 TCATGCTCTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----GAATGGCGTCCTGC
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGC
* * * *
199915 TCTTTGAGGACTGAAAAAT-CCACAAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
66 TCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCA
*
199969 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCC
1 TCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G-AAAGGCGTCC
200034 TGCTCTTTAAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
63 TGCTCTTTAAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
200087 TCCTACTCTTTGAGGACTA-AAAG
1 TCCTGCTCTTTGAGGACTAGAAAG
200110 GCAAAATGAG
Statistics
Matches: 399, Mismatches: 59, Indels: 60
0.77 0.11 0.12
Matches are distributed among these distances:
109 4 0.01
110 89 0.22
111 2 0.01
115 37 0.09
116 139 0.35
117 5 0.01
118 26 0.07
119 1 0.00
120 1 0.00
121 5 0.01
122 64 0.16
123 6 0.02
124 20 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (114 bp):
TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGC
TCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:201198 original size:1 final size:1
Alignment explanation
Indices: 201192--201272 Score: 72
Period size: 1 Copynumber: 81.0 Consensus size: 1
201182 CTTTTCTCTC
* * * * * * * * *
201192 TTTTTTTCTTTTTTCTTTTTGTTTTTCTTTATTTTTTTGTTTTTTTGTTTTTTTGTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
201257 TTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTT
201273 AAAAAAAGAA
Statistics
Matches: 60, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.88
Consensus pattern (1 bp):
T
Found at i:201200 original size:17 final size:16
Alignment explanation
Indices: 201178--201265 Score: 65
Period size: 15 Copynumber: 5.6 Consensus size: 16
201168 AAGCAGGCTC
201178 TTTTCTTTTCTCTCTTT
1 TTTTCTTTTCT-TCTTT
201195 TTTTCTTTT-TTCTTT
1 TTTTCTTTTCTTCTTT
* *
201210 TTGT-TTTTCTTTATTT
1 TTTTCTTTTC-TTCTTT
* * *
201226 TTTTGTTTTTTTGTTT
1 TTTTCTTTTCTTCTTT
* *
201242 TTTTGTTTT-TTGTTT
1 TTTTCTTTTCTTCTTT
*
201257 TTTTGTTTT
1 TTTTCTTTT
201266 TTTTTTTAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
14 4 0.06
15 23 0.37
16 23 0.37
17 13 0.21
ACGTcount: A:0.01, C:0.08, G:0.07, T:0.84
Consensus pattern (16 bp):
TTTTCTTTTCTTCTTT
Found at i:201203 original size:8 final size:8
Alignment explanation
Indices: 201178--201272 Score: 72
Period size: 8 Copynumber: 12.1 Consensus size: 8
201168 AAGCAGGCTC
201178 TTTTCTTT
1 TTTTCTTT
*
201186 TCTCTCTTT
1 T-TTTCTTT
201195 TTTTC-TT
1 TTTTCTTT
201202 TTTTCTTT
1 TTTTCTTT
201210 TTGTT-TTT
1 TT-TTCTTT
* *
201218 CTTTATTT
1 TTTTCTTT
*
201226 TTTTGTTT
1 TTTTCTTT
*
201234 TTTTGTTT
1 TTTTCTTT
*
201242 TTTT-GTT
1 TTTTCTTT
*
201249 TTTTGTTT
1 TTTTCTTT
*
201257 TTTTGTTT
1 TTTTCTTT
201265 TTTT-TTT
1 TTTTCTTT
201272 T
1 T
201273 AAAAAAAGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 11
0.81 0.08 0.12
Matches are distributed among these distances:
7 19 0.25
8 47 0.63
9 9 0.12
ACGTcount: A:0.01, C:0.07, G:0.06, T:0.85
Consensus pattern (8 bp):
TTTTCTTT
Found at i:201234 original size:23 final size:20
Alignment explanation
Indices: 201192--201272 Score: 83
Period size: 21 Copynumber: 3.9 Consensus size: 20
201182 CTTTTCTCTC
*
201192 TTTTTTTCTTTTTTCTTTTTG
1 TTTTTTT-TTTTTTTTTTTTG
*
201213 TTTTTCTTTATTTTTTTGTTT-
1 TTTTT-TTT-TTTTTTTTTTTG
* *
201234 TTTTGTTTTTTTGTTTTTTG
1 TTTTTTTTTTTTTTTTTTTG
201254 TTTTTTTGTTTTTTTTTTT
1 TTTTTTT-TTTTTTTTTTT
201273 AAAAAAAGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
19 9 0.18
20 9 0.18
21 20 0.41
22 11 0.22
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.88
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTTTTTG
Found at i:215070 original size:8 final size:8
Alignment explanation
Indices: 215057--215087 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
215047 ACAAAAAACA
215057 AAACAAAT
1 AAACAAAT
215065 AAACAAAT
1 AAACAAAT
*
215073 AAATAAAT
1 AAACAAAT
215081 AAACAAA
1 AAACAAA
215088 CACCTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (8 bp):
AAACAAAT
Found at i:217302 original size:51 final size:51
Alignment explanation
Indices: 217237--217353 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 51
217227 TAAAATAACG
* * * * *
217237 GGGTTAGAGTATCCCCGATTGTGAAAAATCGATGCTTTAGAAATAAGGCCA
1 GGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCA
* * * * *
217288 GGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGTCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCA
*
217339 GGGTTGGAATATCCC
1 GGGTTGGAGTATCCC
217354 TTCAAAAATA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCA
Found at i:217390 original size:28 final size:28
Alignment explanation
Indices: 217359--217413 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
217349 ATCCCTTCAA
*
217359 AAATAATGGGGTTGGAGTATCCCCGATG
1 AAATAATGGGGTTAGAGTATCCCCGATG
217387 AAATAATGGGGTTAGAGTATCCCCGAT
1 AAATAATGGGGTTAGAGTATCCCCGAT
217414 TGTGAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (28 bp):
AAATAATGGGGTTAGAGTATCCCCGATG
Found at i:217464 original size:51 final size:51
Alignment explanation
Indices: 217396--217563 Score: 248
Period size: 51 Copynumber: 3.3 Consensus size: 51
217386 GAAATAATGG
* * * *
217396 GGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCAA
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
* * *
217447 AGTTGGAGTCTCCCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
*
217498 GGTTGGAGTATCCCCGATTGT-AGAAAATTGATGTTTTAAAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTGTGA-AAAATTGATGTTTTAGAAATAAAACCGA
217549 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
217564 TCGAAAATAA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
51 105 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGA
Found at i:217502 original size:158 final size:158
Alignment explanation
Indices: 217208--217511 Score: 394
Period size: 158 Copynumber: 1.9 Consensus size: 158
217198 AAATAAAACC
**
217208 GGGGTTGGAGTATCCCCTCTAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGCT
1 GGGGTTGGAGTATCCCCGATAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGCT
** ** * **
217273 TTAGAAATAAGGCCAGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGTC
66 TTAGAAATAAAACCAAAGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
*
217338 GGGGTTGGAATATCCCTTCAAAAATAAT
131 GAGGTTGGAATATCCCTTCAAAAATAAT
* * * *
217366 GGGGTTGGAGTATCCCCGATGAAATAATGGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTT
1 GGGGTTGGAGTATCCCCGATAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGCT
* * * * ** *
217431 TTGGAAATAAAATCAAAGTTGGAGTCTCCCCGATTGTG-GAAAATTGATGTTTTAGAAATAAAAC
66 TTAGAAATAAAACCAAAGTTGGAGTATCCCCGATTATGAG-AAATCAATATTTTAGAAATAAAAC
*
217495 CGAGGTTGGAGTATCCC
130 CGAGGTTGGAATATCCC
217512 CGATTGTAGA
Statistics
Matches: 123, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
157 1 0.01
158 122 0.99
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (158 bp):
GGGGTTGGAGTATCCCCGATAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGCT
TTAGAAATAAAACCAAAGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
GAGGTTGGAATATCCCTTCAAAAATAAT
Found at i:220047 original size:49 final size:50
Alignment explanation
Indices: 219973--220106 Score: 191
Period size: 50 Copynumber: 2.7 Consensus size: 50
219963 AAAAATGCAT
* * *
219973 GAATGTGTCGATACATTGCAA-AATGTATCGATACATCTGGGT-AAACCTA
1 GAATGTATCGATACAATG-AACAATGTATCGATACATCTGGGTAAAACCCA
220022 GAATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCA
1 GAATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCA
* * *
220072 GAATGTATCGATATAATTAACAATGTATCAATACA
1 GAATGTATCGATACAATGAACAATGTATCGATACA
220107 AATTGTGAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
48 2 0.03
49 37 0.48
50 38 0.49
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (50 bp):
GAATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCA
Found at i:222731 original size:20 final size:20
Alignment explanation
Indices: 222706--222756 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
222696 ACCCTCAAAA
*
222706 GTATCGATACACATTTAAAT
1 GTATCGATACACATTGAAAT
* * *
222726 GTATCGATACAGATTGCATT
1 GTATCGATACACATTGAAAT
222746 GTATCGATACA
1 GTATCGATACA
222757 TTGTATCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (20 bp):
GTATCGATACACATTGAAAT
Found at i:222760 original size:13 final size:13
Alignment explanation
Indices: 222742--222770 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
222732 ATACAGATTG
222742 CATTGTATCGATA
1 CATTGTATCGATA
222755 CATTGTATCGATA
1 CATTGTATCGATA
222768 CAT
1 CAT
222771 GACCAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:222783 original size:20 final size:21
Alignment explanation
Indices: 222758--222810 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
222748 ATCGATACAT
*
222758 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
222778 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
222799 TGTATCGATACA
1 TGTATCGATACA
222811 AGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:227659 original size:19 final size:19
Alignment explanation
Indices: 227612--227667 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
227602 CTGCCAGTTT
**
227612 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
227632 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
227651 CATGCATCGATACAATG
1 CATGTATCGATACAATG
227668 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:228648 original size:33 final size:33
Alignment explanation
Indices: 228587--228649 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
228577 AAGTGCACTA
* *
228587 AAGTGCTCATCCATGCACTGTGAGAGTGAAATG
1 AAGTGCTCATCCATGCACTATGAAAGTGAAATG
* **
228620 AAGTGCTCATTCATGTGCTATGAAAGTGAA
1 AAGTGCTCATCCATGCACTATGAAAGTGAA
228650 GTGATCAACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (33 bp):
AAGTGCTCATCCATGCACTATGAAAGTGAAATG
Found at i:237678 original size:19 final size:20
Alignment explanation
Indices: 237654--237704 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
237644 GCATCGATAT
*
237654 ATTGTATCGATACATGCTC-
1 ATTGTATCGATACATACTCA
237673 ATTGTATCGATACATACTCA
1 ATTGTATCGATACATACTCA
*
237693 ATTGTCTCGATA
1 ATTGTATCGATA
237705 TGTGAAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (20 bp):
ATTGTATCGATACATACTCA
Found at i:242896 original size:20 final size:20
Alignment explanation
Indices: 242871--242923 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
242861 AAATTCCCAG
242871 ATGTATCGATACAATG-ATCA
1 ATGTATCGATACAATGAAT-A
* *
242891 ATGTATCGATATATTGAATA
1 ATGTATCGATACAATGAATA
242911 ATGTATCGATACA
1 ATGTATCGATACA
242924 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATGAATA
Found at i:243964 original size:49 final size:49
Alignment explanation
Indices: 243775--244093 Score: 168
Period size: 49 Copynumber: 6.7 Consensus size: 49
243765 AGATGCGAAG
* * *
243775 AATGACAATGTGCTGATTCATGGCCAGCGACATTAGAT-TTAAA-A--AA
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATGAA
* ** * **
243821 GAATGCCATTGTGCTGAGACAAGGCCAGTGACATTAGG-CTTAGGGATGTTAA
1 -AATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATG--AA
* * ** * ** *
243873 AGATGCCAATATGCTGATTCAAAGCCAATGATATCAGACTTAAAGATGAA
1 A-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
*
243923 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAA
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
** * * * *
243971 GGTGCCAATATGCCGATTCAAAGCCAGCGATATTAGG-C-T-----T---
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATGAA
* * **
244011 -ATGCTAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATGTC
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
** * *
244059 GGTGCCAATATGCTGATTCAAGGCCAGTGACATTG
1 AATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
244094 ACTTAAAAGT
Statistics
Matches: 204, Mismatches: 47, Indels: 40
0.70 0.16 0.14
Matches are distributed among these distances:
38 2 0.01
39 27 0.13
40 1 0.00
45 1 0.00
47 34 0.17
48 32 0.16
49 67 0.33
50 3 0.01
51 2 0.01
52 35 0.17
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (49 bp):
AATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
Found at i:244119 original size:42 final size:43
Alignment explanation
Indices: 243921--244141 Score: 168
Period size: 48 Copynumber: 5.0 Consensus size: 43
243911 CTTAAAGATG
* *
243921 AAAA-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 AAAAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
243963 AAAGACAAGGTGCCAATATGCCGATTCAAAGCCAGCGATATTAGG-CTT
1 --A-A-AA-GTGCCAATATGCTGATTCAAGGCCAGCGACATT-GGACTT
* * * *
244011 ---A-TGCTAATGTGCTGATTCAAGGCCAGCAACATTGGTCTT
1 AAAAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
*
244050 AAAGATGTCGGTGCCAATATGCTGATTCAAGGCCAGTGACATT-GACTT
1 AAA-A-----GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
244098 AAAAGTGCCAATATGTTGATTCAAGGTCAGCGATATTGGACTT
1 AAAAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
244141 A
1 A
244142 GAAGAAGATG
Statistics
Matches: 141, Mismatches: 19, Indels: 35
0.72 0.10 0.18
Matches are distributed among these distances:
38 2 0.01
39 29 0.21
41 1 0.01
42 29 0.21
43 7 0.05
44 1 0.01
45 1 0.01
46 2 0.01
47 1 0.01
48 38 0.27
49 30 0.21
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
Found at i:244220 original size:28 final size:29
Alignment explanation
Indices: 244162--244318 Score: 205
Period size: 29 Copynumber: 5.5 Consensus size: 29
244152 CCACCACTTG
**
244162 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTGACT
*
244191 TGTGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* *
244219 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
244248 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* * *
244276 TGTGGGCTTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
244305 TGTGGGC-TTTGAAA
1 TGTGGGCTTTTGAAA
244319 AGGTGAGGAA
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
27 5 0.04
28 50 0.44
29 58 0.51
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.33
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTGACT
Found at i:244249 original size:57 final size:57
Alignment explanation
Indices: 244162--244314 Score: 236
Period size: 57 Copynumber: 2.7 Consensus size: 57
244152 CCACCACTTG
* * ** *
244162 TGTGGGCTTTTGAAAGGGTTG-CACCAACTTGTGTGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAA-AGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACT
244219 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACT
*
244276 TGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTT
244315 GAAAAGGTGA
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
56 3 0.03
57 86 0.97
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.34
Consensus pattern (57 bp):
TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:245595 original size:21 final size:20
Alignment explanation
Indices: 245565--245603 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
245555 CACATTTTTG
245565 TCTAAATGTATCGATACATT
1 TCTAAATGTATCGATACATT
245585 TCTAGAATGTATCGATACA
1 TCTA-AATGTATCGATACA
245604 AGGTCCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
TCTAAATGTATCGATACATT
Found at i:245657 original size:13 final size:13
Alignment explanation
Indices: 245639--245664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
245629 TTTTAATAAT
245639 TTGTATCGATACA
1 TTGTATCGATACA
245652 TTGTATCGATACA
1 TTGTATCGATACA
245665 GAAGTGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:245683 original size:32 final size:31
Alignment explanation
Indices: 245639--245699 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
245629 TTTTAATAAT
* *
245639 TTGTATCGATACATTGTATCGATACAGAAGTG
1 TTGTATCAATACAATGTATCGATAC-GAAGTG
*
245671 TTGTATCAATACAATGTATCGCTACGAAG
1 TTGTATCAATACAATGTATCGATACGAAG
245700 CTACTACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (31 bp):
TTGTATCAATACAATGTATCGATACGAAGTG
Found at i:245736 original size:20 final size:20
Alignment explanation
Indices: 245711--245748 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
245701 TACTACCAAG
245711 GAAATGTATCCATACATTAC
1 GAAATGTATCCATACATTAC
*
245731 GAAATGTATCGATACATT
1 GAAATGTATCCATACATT
245749 GTATCGATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (20 bp):
GAAATGTATCCATACATTAC
Found at i:245753 original size:13 final size:13
Alignment explanation
Indices: 245735--245760 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
245725 CATTACGAAA
245735 TGTATCGATACAT
1 TGTATCGATACAT
245748 TGTATCGATACAT
1 TGTATCGATACAT
245761 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:254119 original size:31 final size:31
Alignment explanation
Indices: 254068--254505 Score: 187
Period size: 31 Copynumber: 13.6 Consensus size: 31
254058 CTTCAAATAC
*
254068 CTTCTTAAAGTCCACAACTCAGTGGCAATCT
1 CTTCTCAAAGTCCACAACTCAGTGGCAATCT
* * * *
254099 CTTCTCAAAGCCCACGACTCAGTGGCATTTT
1 CTTCTCAAAGTCCACAACTCAGTGGCAATCT
* * * *
254130 GTCCT-AAAGTCCACGACTCAGTGGC-ATTT
1 CTTCTCAAAGTCCACAACTCAGTGGCAATCT
*
254159 TTTCTCCAAAGTCCACAACTCAGTGGCAATCT
1 CTTCT-CAAAGTCCACAACTCAGTGGCAATCT
* * *
254191 CTTTTCAAAGTCCACGACTCAGAGGC-ATCT
1 CTTCTCAAAGTCCACAACTCAGTGGCAATCT
* * * * *
254221 TTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 CTTC-TCAAAGTCCACAACTCAGTGGCA---ATCT
* * * *
254256 CTTTTCAAAGCCCATAACTCTGTGGC-ATC-
1 CTTCTCAAAGTCCACAACTCAGTGGCAATCT
* * * *
254285 CTT-TTAAAGTCCACAACTCTGTGGCACCTTGTTT
1 CTTCTCAAAGTCCACAACTCAGTGGCA----ATCT
* ** * *
254319 CTTTTC-AAGTCCACAACTTTGTAGGCACCTTTTT
1 CTTCTCAAAGTCCACAACTCAGT-GGCA---ATCT
* * * * *
254353 CTTTTTAAAGCCCACAACTCCGTGGCACAATTTTT
1 CTTCTCAAAGTCCACAACTCAGTGG--CAA--TCT
* * *
254388 CTTTTTAAAAGTCCACAACTCCGTGGC-ATCT
1 C-TTCTCAAAGTCCACAACTCAGTGGCAATCT
254419 CTTTCCTTCAAAGTCCACAACTCAGTGGC-ATCCCTT
1 C-TT-C-TCAAAGTCCACAACTCAGTGGCAAT--C-T
* *
254455 TTTCCTCTAAGTCCACAACTCAGTGGC-ATCT
1 CTT-CTCAAAGTCCACAACTCAGTGGCAATCT
*
254486 CTTTTC-AAGTCCTACAACTC
1 CTTCTCAAAGTCC-ACAACTC
254506 CATGGCACCC
Statistics
Matches: 324, Mismatches: 55, Indels: 57
0.74 0.13 0.13
Matches are distributed among these distances:
28 19 0.06
29 15 0.05
30 35 0.11
31 94 0.29
32 7 0.02
33 24 0.07
34 74 0.23
35 31 0.10
36 25 0.08
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.32
Consensus pattern (31 bp):
CTTCTCAAAGTCCACAACTCAGTGGCAATCT
Found at i:254218 original size:62 final size:61
Alignment explanation
Indices: 254073--254248 Score: 214
Period size: 62 Copynumber: 2.9 Consensus size: 61
254063 AATACCTTCT
* * *
254073 TAAAGTCCACAACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGC-ATTTTGTCC
1 TAAAGTCCACGACTCAGTGGC-ATCTTTTCTCAAAGCCCACAACTCAGTGGCAATTTTGTCC
* * *
254134 TAAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGTCCACAACTCAGTGGCAATCTCTT-TTC
1 TAAAGTCCACGACTCAGTGGCATCTTTTCT-CAAAGCCCACAACTCAGTGGCAAT-T-TTGTCC
* *
254197 -AAAGTCCACGACTCAGAGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCA
1 TAAAGTCCACGACTCAGTGGCATCTTTTC-TCAAAGCCCACAACTCAGTGGCA
254249 CCTTTTTCTT
Statistics
Matches: 100, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
60 7 0.07
61 39 0.39
62 48 0.48
63 4 0.04
64 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (61 bp):
TAAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGCCCACAACTCAGTGGCAATTTTGTCC
Found at i:254265 original size:34 final size:34
Alignment explanation
Indices: 254135--254519 Score: 242
Period size: 34 Copynumber: 11.8 Consensus size: 34
254125 ATTTTGTCCT
* * * *
254135 AAAGTCCACGACTCAGTGGCA--TTTTT-TCTCC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
* * *
254166 AAAGTCCACAACTCAGTGGCA---ATCTCTTTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
* * * *
254197 AAAGTCCACGACTCAGAGGCATC-TTTTC--TTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
*
254228 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
* * * *
254262 AAAGCCCATAACTCTGTGGCA-----TCCTTTT-
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
*
254290 AAAGTCCACAACTCTGTGGCACCTTGTTTCTTTTC
1 AAAGTCCACAACTCCGTGGCACCTT-TTTCTTTTC
** *
254325 -AAGTCCACAACTTTGTAGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGT-GGCACCTTTTTCTTTTC
* * *
254359 AAAGCCCACAACTCCGTGGCACAATTTTTCTTTTTA
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTC-TTTTC
* * *
254395 AAAGTCCACAACTCCGTGGCATCTCTTTC-CTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
* *
254428 AAAGTCCACAACTCAGTGGCATCCCTTTTTC--CTC
1 AAAGTCCACAACTCCGTGGCA--CCTTTTTCTTTTC
* * *
254462 TAAGTCCACAACTCAGTGGCA----TCTCTTTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
* *
254492 -AAGTCCTACAACTCCATGGCACCCTTTT
1 AAAGTCC-ACAACTCCGTGGCACCTTTTT
254520 AAGTCCACAA
Statistics
Matches: 285, Mismatches: 43, Indels: 49
0.76 0.11 0.13
Matches are distributed among these distances:
28 22 0.08
29 12 0.04
30 16 0.06
31 63 0.22
32 5 0.02
33 25 0.09
34 80 0.28
35 38 0.13
36 24 0.08
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.33
Consensus pattern (34 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC
Found at i:254360 original size:69 final size:65
Alignment explanation
Indices: 254166--254537 Score: 226
Period size: 62 Copynumber: 5.8 Consensus size: 65
254156 TTTTTTCTCC
* * * * * *
254166 AAAGTCCACAACTCAGTGGCAATCTCTTTTC---AAAGTCCACGACTCAGAGGCATCT-TTTC-T
1 AAAGTCCACAACTCAGTGGC-ACCT-TTTTCTTTTAAGTCCACAACTCCGTGGCACCTCTTTCTT
*
254226 TC
64 TT
* * * * *
254228 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCATAACTCTGTGGCA--TC---CTT
1 AAAGTCCACAACTCAGTGGCACCTTTTTCTTTT--AAGTCCACAACTCCGTGGCACCTCTTTCTT
254288 TT
64 TT
* ** *
254290 AAAGTCCACAACTCTGTGGCACCTTGTTTCTTTTCAAGTCCACAACTTTGTAGGCACCTTTTTCT
1 AAAGTCCACAACTCAGTGGCACCTT-TTTCTTTT-AAGTCCACAACTCCGT-GGCACCTCTTTC-
254355 TTTT
62 TTTT
* * * *
254359 AAAGCCCACAACTCCGTGGCACAATTTTTCTTTTTAAAAGTCCACAACTCCGTGGCATCTCTTTC
1 AAAGTCCACAACTCAGTGGCAC-CTTTTTC-TTTT--AAGTCCACAACTCCGTGGCACCTCTTTC
* *
254424 CTTC
62 TTTT
* * *
254428 AAAGTCCACAACTCAGTGGCATCCCTTTTTCCTCTAAGTCCACAACTCAGTGGCA--TC--TCTT
1 AAAGTCCACAACTCAGTGGCA--CCTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTCTTTCTT
254489 TT
64 TT
*
254491 CAAGTCCTACAACTCCA-TGGCACC-----CTTTTAAGTCCACAACTCCGTGG
1 AAAGTCC-ACAACT-CAGTGGCACCTTTTTCTTTTAAGTCCACAACTCCGTGG
254538 TATCTTTCTC
Statistics
Matches: 249, Mismatches: 39, Indels: 49
0.74 0.12 0.15
Matches are distributed among these distances:
57 20 0.08
60 5 0.02
61 4 0.02
62 58 0.23
63 23 0.09
64 11 0.04
65 20 0.08
67 19 0.08
68 1 0.00
69 51 0.20
70 22 0.09
71 15 0.06
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.32
Consensus pattern (65 bp):
AAAGTCCACAACTCAGTGGCACCTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTCTTTCTTTT
Found at i:254518 original size:29 final size:29
Alignment explanation
Indices: 254396--254537 Score: 107
Period size: 34 Copynumber: 4.7 Consensus size: 29
254386 TTCTTTTTAA
*
254396 AAGTCCACAACTCC-GTGGCATCTCTTTCCTT
1 AAGTCCACAACTCCAGTGGCATC-CCTT--TT
254427 CAAAGTCCACAACT-CAGTGGCATCCCTTTTTCCTCT
1 --AAGTCCACAACTCCAGTGGCATCCC---TT--T-T
*
254463 AAGTCCACAACT-CAGTGGCATCTCTTTT
1 AAGTCCACAACTCCAGTGGCATCCCTTTT
254491 CAAGTCCTACAACTCCA-TGGCA-CCCTTTT
1 -AAGTCC-ACAACTCCAGTGGCATCCCTTTT
254520 AAGTCCACAACTCC-GTGG
1 AAGTCCACAACTCCAGTGG
254538 TATCTTTCTC
Statistics
Matches: 97, Mismatches: 3, Indels: 24
0.78 0.02 0.19
Matches are distributed among these distances:
27 11 0.11
28 7 0.07
29 13 0.13
30 11 0.11
31 4 0.04
32 2 0.02
33 20 0.21
34 23 0.24
35 5 0.05
36 1 0.01
ACGTcount: A:0.23, C:0.35, G:0.13, T:0.29
Consensus pattern (29 bp):
AAGTCCACAACTCCAGTGGCATCCCTTTT
Found at i:254672 original size:49 final size:49
Alignment explanation
Indices: 254612--255480 Score: 861
Period size: 49 Copynumber: 17.8 Consensus size: 49
254602 GGCATCTTCT
* * *
254612 TTTAAGTCCAATATCGTTGGCCTTGAATTAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
254661 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* **
254704 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* *
254756 TTTAAGACCAATATCGTTGGCCTTGAATCAGCATATTGG---C---ATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
** *
254799 TTTAAGTCCGGTATCGCTGGCCTTGAATCAGCATATTGGCA-CTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * * *
254847 TTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG---C---A--
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * * * *
254888 --TAAGCCCAATGTCGCTGGCCTTAAATCAGCACATTGGCATCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
254935 ATTAAGTCCAATATCGCTGGCCTTGAATCAG-AGCATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCA-TATTGGCACCTTTATC
* * *
254984 CTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * *
255036 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
255085 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * * *
255137 TTTAAGTCCAATGTCGCTTGCCTTGAAT-AGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * **
255185 TTTAAGTCCAATGTCGCTGGCCTTGAATTAGCATATTGGTGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
*
255237 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
*
255286 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * * * *
255338 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGCCACCTTCATT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * *
255387 TTTAAGTACAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCATT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
** * * *
255439 TTTAAAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
255481 TTCTTCTCAT
Statistics
Matches: 699, Mismatches: 78, Indels: 82
0.81 0.09 0.10
Matches are distributed among these distances:
39 33 0.05
42 1 0.00
43 76 0.11
44 1 0.00
45 2 0.00
46 1 0.00
48 67 0.10
49 255 0.36
50 12 0.02
51 20 0.03
52 199 0.28
53 32 0.05
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
Found at i:254908 original size:39 final size:39
Alignment explanation
Indices: 254849--254927 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
254839 ACTTCATCTT
* *
254849 TAAGACCAATGTCGTTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTAAATCAACACATTGGCA
* *
254888 TAAGCCCAATGTCGCTGGCCTTAAATCAGCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTAAATCAACACATTGGCA
254927 T
1 T
254928 CTTCATCATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (39 bp):
TAAGACCAATGTCGCTGGCCTTAAATCAACACATTGGCA
Found at i:255060 original size:101 final size:101
Alignment explanation
Indices: 254888--255480 Score: 890
Period size: 101 Copynumber: 5.9 Consensus size: 101
254878 CACATTGGCA
* * * * * * * *
254888 TAAGCCCAATGTCGCTGGCCTTAAATCAGCACATT-G-GCATCT-TCATCATTAAGTCCAATATC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
*
254950 GCTGGCCTTGAATCAG-AGCATTGGCACCTTCATCCT
66 GCTGGCCTTGAATCAGCA-CATTGGCACCTTCATCTT
*
254986 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
255051 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
255087 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
*
255152 GCTTGCCTTGAAT-AGCACATTGGCACCTTCATCTT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
255187 TAAGTCCAATGTCGCTGGCCTTGAATTAGCATATTGGTGCCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
* *
255252 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
255288 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
* *
255353 GCTGGCCTTGAATCAGCACATTGCCACCTTCATTTT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * ** * **
255389 TAAGTACAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCATTTTTAAAACCCAATGT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT-AAGTCCAATGT
*
255454 CGTTGGCCTTGAATCAGCACATTGGCA
65 CGCTGGCCTTGAATCAGCACATTGGCA
255481 TTCTTCTCAT
Statistics
Matches: 453, Mismatches: 36, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
98 30 0.07
99 1 0.00
100 99 0.22
101 288 0.64
102 35 0.08
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (101 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:256091 original size:20 final size:21
Alignment explanation
Indices: 256066--256106 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
256056 ATCACATTTT
256066 TTTCTA-AATGTATCGATACA
1 TTTCTAGAATGTATCGATACA
256086 TTTCTAGAATGTATCGATACA
1 TTTCTAGAATGTATCGATACA
256107 AGGTCCCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (21 bp):
TTTCTAGAATGTATCGATACA
Found at i:256226 original size:20 final size:20
Alignment explanation
Indices: 256201--256238 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
256191 TACTGCCAAG
256201 GAAATGTATCGATACATTAT
1 GAAATGTATCGATACATTAT
256221 GAAATGTATCGATACATT
1 GAAATGTATCGATACATT
256239 GTATCAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (20 bp):
GAAATGTATCGATACATTAT
Found at i:259526 original size:1 final size:1
Alignment explanation
Indices: 259522--259586 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
259512 CTTTTTGTTG
* * ** * * * *
259522 TTTTTTTTTTTGTTTATTTTTTTAGTTTTTTGTTTGTTTTTTTTCTTCTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
259587 GCGGAGGACG
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (1 bp):
T
Found at i:259534 original size:12 final size:12
Alignment explanation
Indices: 259513--259586 Score: 80
Period size: 12 Copynumber: 6.2 Consensus size: 12
259503 ATCCGGACCC
*
259513 TTTTTGTTGTTT
1 TTTTTTTTGTTT
259525 TTTTTTTTGTTT
1 TTTTTTTTGTTT
*
259537 ATTTTTTTAG-TT
1 -TTTTTTTTGTTT
*
259549 TTTTGTTTGTTT
1 TTTTTTTTGTTT
* *
259561 TTTTTCTTCTTT
1 TTTTTTTTGTTT
259573 TTTTTTTT-TTT
1 TTTTTTTTGTTT
259584 TTT
1 TTT
259587 GCGGAGGACG
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
11 13 0.25
12 31 0.60
13 8 0.15
ACGTcount: A:0.03, C:0.03, G:0.08, T:0.86
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:259552 original size:20 final size:20
Alignment explanation
Indices: 259527--259564 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
259517 TGTTGTTTTT
259527 TTTTTTGTTTATTTTTTTAG
1 TTTTTTGTTTATTTTTTTAG
*
259547 TTTTTTGTTTGTTTTTTT
1 TTTTTTGTTTATTTTTTT
259565 TCTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.05, C:0.00, G:0.11, T:0.84
Consensus pattern (20 bp):
TTTTTTGTTTATTTTTTTAG
Found at i:259574 original size:32 final size:33
Alignment explanation
Indices: 259514--259576 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
259504 TCCGGACCCT
*
259514 TTTTGTTGTTTTTTTTTTTGTTTATTTTTTTAG
1 TTTTGTTGTTTTTTTTTTTGCTTATTTTTTTAG
*
259547 TTTT-TTGTTTGTTTTTTTT-CTTCTTTTTTT
1 TTTTGTTGTTT-TTTTTTTTGCTTATTTTTTT
259577 TTTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.84
Consensus pattern (33 bp):
TTTTGTTGTTTTTTTTTTTGCTTATTTTTTTAG
Found at i:272198 original size:67 final size:67
Alignment explanation
Indices: 272084--272219 Score: 227
Period size: 67 Copynumber: 2.0 Consensus size: 67
272074 CTTGGTTTCC
* * * *
272084 TACGTGTTTACGGATTTACACTCTAGTCATGGACATCCGAGCGTCCATGATCGAAAGGAGAGAGT
1 TACGTGTTTACAGATTTAAACTCTAGTCATGGACATACGAGCATCCATGATCGAAAGGAGAGAGT
272149 GG
66 GG
*
272151 TACGTGTTTACAGATTTAAACTCTAGTCATGGACATATGAGCATCCATGATCGAAAGGAGAGAGT
1 TACGTGTTTACAGATTTAAACTCTAGTCATGGACATACGAGCATCCATGATCGAAAGGAGAGAGT
272216 GG
66 GG
272218 TA
1 TA
272220 TGAGCATCAC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (67 bp):
TACGTGTTTACAGATTTAAACTCTAGTCATGGACATACGAGCATCCATGATCGAAAGGAGAGAGT
GG
Found at i:278344 original size:27 final size:27
Alignment explanation
Indices: 278306--278372 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
278296 GGTTGAAAAC
278306 GGGGTTGGAGTGTCCCCT-AGGAGGAAT
1 GGGGTTGGAGTGTCCCCTCA-GAGGAAT
278333 GGGGTTGGAGTGTCCCCTCAGAGGAAT
1 GGGGTTGGAGTGTCCCCTCAGAGGAAT
* *
278360 GGGATTAGAGTGT
1 GGGGTTGGAGTGT
278373 TCCTGACGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.13, G:0.43, T:0.24
Consensus pattern (27 bp):
GGGGTTGGAGTGTCCCCTCAGAGGAAT
Found at i:280674 original size:13 final size:13
Alignment explanation
Indices: 280656--280681 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
280646 ACAAAGATCG
280656 ATGTATCGATACA
1 ATGTATCGATACA
280669 ATGTATCGATACA
1 ATGTATCGATACA
280682 TTGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:288240 original size:50 final size:50
Alignment explanation
Indices: 288186--288292 Score: 169
Period size: 50 Copynumber: 2.1 Consensus size: 50
288176 CAATTTTACT
* *
288186 TTTTCAAAAAACAAATAAGGCAATCTTTTCAATTTAAAACCATTCACGAA
1 TTTTCAAAAAACAAATAAGGCAATCTTCTCAATTTAAAACCATTCACAAA
* *
288236 TTTTCAAAAAACAAGTAAGGCATTCTTCTCAATTTAAAACCATTCACAAA
1 TTTTCAAAAAACAAATAAGGCAATCTTCTCAATTTAAAACCATTCACAAA
288286 TATTTCA
1 T-TTTCA
288293 CTCGGTTGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 47 0.90
51 5 0.10
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.32
Consensus pattern (50 bp):
TTTTCAAAAAACAAATAAGGCAATCTTCTCAATTTAAAACCATTCACAAA
Found at i:289458 original size:13 final size:13
Alignment explanation
Indices: 289440--289464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
289430 ATATGCTGCT
289440 TTGTATCGATACA
1 TTGTATCGATACA
289453 TTGTATCGATAC
1 TTGTATCGATAC
289465 GTGTTCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:296923 original size:13 final size:13
Alignment explanation
Indices: 296905--296930 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
296895 CAATTTTTTG
296905 TGTATCGATACAT
1 TGTATCGATACAT
296918 TGTATCGATACAT
1 TGTATCGATACAT
296931 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:296942 original size:32 final size:33
Alignment explanation
Indices: 296885--296948 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
296875 TACAAGCCAA
**
296885 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
296918 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
296949 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:298744 original size:13 final size:13
Alignment explanation
Indices: 298726--298750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
298716 ACTGAAGTAA
298726 TGTATCGATACAT
1 TGTATCGATACAT
298739 TGTATCGATACA
1 TGTATCGATACA
298751 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:300759 original size:21 final size:21
Alignment explanation
Indices: 300735--300776 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
300725 ATCCATTTCT
* *
300735 TCATTTTCATCAACCTCTTGA
1 TCATCTTCATCAACATCTTGA
*
300756 TCATCTTCATCATCATCTTGA
1 TCATCTTCATCAACATCTTGA
300777 ACGATTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
TCATCTTCATCAACATCTTGA
Found at i:302414 original size:13 final size:13
Alignment explanation
Indices: 302396--302421 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
302386 ACAATTTTTG
302396 TGTATCGATACAT
1 TGTATCGATACAT
302409 TGTATCGATACAT
1 TGTATCGATACAT
302422 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:302418 original size:32 final size:32
Alignment explanation
Indices: 302377--302439 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
302367 TACAAGCCAA
*
302377 TGTATCGATACA-ATTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGTGTATCGATACAT
302409 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
302440 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:303588 original size:52 final size:52
Alignment explanation
Indices: 303484--303602 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 52
303474 AATAGCCTGC
* * * * *
303484 ATGTATCGATACATTTGGGTCAAAAACCTAGAATGTATCGATATAATGAAAA
1 ATGTATCGATACATTTGGGTCAAAAACCCAAAATGCATCAATACAATGAAAA
*
303536 ATGTATCGATACATTTGGG-CTAAAACCCAAAATGCATCAATACAATGAAAA
1 ATGTATCGATACATTTGGGTCAAAAACCCAAAATGCATCAATACAATGAAAA
* *
303587 AAGTATCGATATATTT
1 ATGTATCGATACATTT
303603 TCGTTTCAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
51 40 0.68
52 19 0.32
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (52 bp):
ATGTATCGATACATTTGGGTCAAAAACCCAAAATGCATCAATACAATGAAAA
Found at i:304459 original size:65 final size:65
Alignment explanation
Indices: 304234--304943 Score: 773
Period size: 66 Copynumber: 10.9 Consensus size: 65
304224 AAGAAAGGGA
* * *
304234 GTCCTATTCTTTAAGGACTAAAAAGGAGTGCCACCAACTTGTGTGGGCTTTTACAAGAAAAA-AA
1 GTCCTACTCTTTGAGGACT-AAAA-G-GTGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAAGAA
*
304298 AATGT
62 AA-GC
* * * * *
304303 GTCCTACTTTTTGAGGACTAAAAGGTGCCACTAGCTTGTGTGGGCTTT---TGAAAAGGAAAAGG
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAA-G
304365 C
65 C
* * *
304366 ATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGAGCTTTAAAAGAAAAAGAAAAGC
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGC
* * *
304431 ATCTTACTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGAAAAGC
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGC
* * *
304496 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTTGTGTGGGCTTTAAGAGGAAAAA-AAAAG
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AAGAAAAAGAAAA-
304560 GC
64 GC
* * * * *
304562 GTCCTACTCTTTAAGGACTAAAAGGTGTCACCAACTTGTTTGGGTTTTAAAAGGAAAAAGAAAGG
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAAGAAAAG
304627 C
65 C
* * * * *
304628 ATCTTACTCTTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGAAAGG
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAAGAAAAG
304693 C
65 C
* * * ** *
304694 GTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAAAGGGAAAGG
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGAAAAG
304759 C
65 C
* * * * * * * *
304760 ATCTTGCACTTTGAGGACTACAAGGTGCCACTAACTTATGTGGGCTTTAAAAAGAAAAAG----T
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGAAAAG
304821 C
65 C
* * *
304822 GTCCTGCTCTTTAAGGACTAAAAGGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAAG---A-
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGAAAAG
304883 C
65 C
* * *
304884 GTCCTACTCTTTAAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAA-ATAAAGAA
1 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAA
304944 GGGGTACTAC
Statistics
Matches: 564, Mismatches: 65, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
60 5 0.01
61 4 0.01
62 106 0.19
63 47 0.08
65 116 0.21
66 258 0.46
67 8 0.01
68 4 0.01
69 16 0.03
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (65 bp):
GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGC
Found at i:304990 original size:31 final size:31
Alignment explanation
Indices: 304955--305041 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
304945 GGGTACTACG
* *
304955 GAGTTATGGACTTTAGAAAAAAGGTGTCATA
1 GAGTTGTGGACTTTAGAAAAAAGGTGCCATA
* * *
304986 GAGTTGTAGATTTTAGAAAAAGGGTGCCATA
1 GAGTTGTGGACTTTAGAAAAAAGGTGCCATA
* *
305017 GAGTTGTGGACTTTTGGAAAAAGGT
1 GAGTTGTGGACTTTAGAAAAAAGGT
305042 TTGGATGATT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (31 bp):
GAGTTGTGGACTTTAGAAAAAAGGTGCCATA
Found at i:305715 original size:18 final size:18
Alignment explanation
Indices: 305689--305724 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
305679 CATTTTTGAC
*
305689 GAAAGGTCTGCTTGACAA
1 GAAAAGTCTGCTTGACAA
305707 GAAAAGTCTGCTTGACAA
1 GAAAAGTCTGCTTGACAA
305725 AAGAGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (18 bp):
GAAAAGTCTGCTTGACAA
Found at i:309089 original size:52 final size:52
Alignment explanation
Indices: 309019--309139 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
309009 GAAAATTTAT
*
309019 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
**
309071 CTGCATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
309123 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
309140 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:309152 original size:52 final size:51
Alignment explanation
Indices: 309019--309159 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 51
309009 GAAAATTTAT
*
309019 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA--AAATCAGTGTATCGATACATCTGGGCAAATTTGC
*** *
309071 CTGCATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACAAAATC-AGTGTATCGATACATCTGGGCAAATTTGC
309123 CTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACAAA-ATCAGTGTATCGATACA
309160 ATGTATCGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
50 2 0.03
52 75 0.95
53 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACAAAATCAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:309166 original size:13 final size:13
Alignment explanation
Indices: 309148--309172 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
309138 CAAAGATCAG
309148 TGTATCGATACAA
1 TGTATCGATACAA
309161 TGTATCGATACA
1 TGTATCGATACA
309173 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:309256 original size:13 final size:13
Alignment explanation
Indices: 309238--309262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
309228 CAAAAAAATA
309238 TGTATCGATACAT
1 TGTATCGATACAT
309251 TGTATCGATACA
1 TGTATCGATACA
309263 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:309258 original size:33 final size:33
Alignment explanation
Indices: 309216--309282 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
309206 AGTAGCTTAA
309216 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
309249 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
309282 A
1 A
309283 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:315015 original size:79 final size:80
Alignment explanation
Indices: 314921--315401 Score: 464
Period size: 80 Copynumber: 6.1 Consensus size: 80
314911 GTGGGGTTAA
* * * **
314921 AGTATCCCCAA-GATGAAAAATTTAATATATTGGGAGT-AAAATCGGGGTTGGAGTAT-CCCTCA
1 AGTATCCCTAATGATGAAAATTTTAATATTTTGAAAGTAAAAAT-GGGGTTGGAGTATCCCCTCA
*
314983 AAAATTATGAGGTTGG
65 AAAATAATGAGGTTGG
* * ** * * *
314999 AGTATCCCTGATGATGAAAA-ATCGATATTTTGAAAATAAAAATGGGGTTTGAGTATCCTCTCAA
1 AGTATCCCTAATGATGAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCCTCAA
* *
315063 AAATAACGAGGTTAG
66 AAATAATGAGGTTGG
* * *
315078 AGTATCCCTGAA--ATGAAAATTTTAATATTTTGGAAGTAAAAATGGGGTTAGAGTATCCCCTCG
1 AGTATCCCT-AATGATGAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCCTCA
* *
315141 AAAATGATGGGGTTGG
65 AAAATAATGAGGTTGG
* * * * *
315157 AATATCCTTAAT-AGTGAAAATTTTGATATTTTGAAAATAAAAATGGGGTTGGAGTGTCCCCTCA
1 AGTATCCCTAATGA-TGAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCCTCA
* *
315221 AAAATAACGAGGTTAG
65 AAAATAATGAGGTTGG
* * *** * * **
315237 AGTAT-CCTAA-GATGAAAATTTTAATTTTTTGGAAGTAAAAACAAGGTTGGAGCATCCCTTTGA
1 AGTATCCCTAATGATGAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCCTCAA
315300 AAATAATG-GAGTTGG
66 AAATAATGAG-GTTGG
* * *
315315 AGTATCCCTAAT-AGTGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTAGAGTATCCCCTCA
1 AGTATCCCTAATGA-TGAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCCTCA
*
315379 AAAATGATG-GAGTTGG
65 AAAATAATGAG-GTTGG
315395 AGTATCC
1 AGTATCC
315402 TCGAAATGAA
Statistics
Matches: 325, Mismatches: 66, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
77 1 0.00
78 95 0.29
79 106 0.33
80 123 0.38
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (80 bp):
AGTATCCCTAATGATGAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATCCCCTCAA
AAATAATGAGGTTGG
Found at i:315268 original size:158 final size:159
Alignment explanation
Indices: 314915--315383 Score: 608
Period size: 158 Copynumber: 3.0 Consensus size: 159
314905 AAGATAGTGG
* * * * *
314915 GGTTAAAGTATCCCCAAGATGAAAAATTTAATATATTGGGAGT-AAAATCGGGGTTGGAGTAT-C
1 GGTTAGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAGTAAAAAT-GGGGTTGGAGTATCC
* * * * * *
314978 CCTCAAAAATTATGAGGTTGGAGTATCCCTGAT-GATGAAAA-ATCGATATTTTGAAAATAAAAA
65 CCTCGAAAATAATGGGGTTGGAGTATCCCTAATAG-TGAAAATTTTGATATTTTGAAAATAAAAA
* *
315041 TGGGGTTTGAGTATCCTCTCAAAAATAACGA
129 TGGGGTTAGAGTATCCCCTCAAAAATAACGA
*
315072 GGTTAGAGTATCCCTGAA-ATGAAAATTTTAATATTTTGGAAGTAAAAATGGGGTTAGAGTATCC
1 GGTTAGAGTATCCCT-AAGATGAAAATTTTAATATTTTGGAAGTAAAAATGGGGTTGGAGTATCC
* * *
315136 CCTCGAAAATGATGGGGTTGGAATATCCTTAATAGTGAAAATTTTGATATTTTGAAAATAAAAAT
65 CCTCGAAAATAATGGGGTTGGAGTATCCCTAATAGTGAAAATTTTGATATTTTGAAAATAAAAAT
* *
315201 GGGGTTGGAGTGTCCCCTCAAAAATAACGA
130 GGGGTTAGAGTATCCCCTCAAAAATAACGA
* *** *
315231 GGTTAGAGTAT-CCTAAGATGAAAATTTTAATTTTTTGGAAGTAAAAACAAGGTTGGAGCATCCC
1 GGTTAGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCC
* * * * *
315295 TTTGAAAATAATGGAGTTGGAGTATCCCTAATAGTGAAAATTTTGATATTTTGAAAGTAAAAACG
66 CTCGAAAATAATGGGGTTGGAGTATCCCTAATAGTGAAAATTTTGATATTTTGAAAATAAAAATG
315360 GGGTTAGAGTATCCCCTCAAAAAT
131 GGGTTAGAGTATCCCCTCAAAAAT
315384 GATGGAGTTG
Statistics
Matches: 273, Mismatches: 33, Indels: 11
0.86 0.10 0.03
Matches are distributed among these distances:
157 49 0.18
158 164 0.60
159 60 0.22
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (159 bp):
GGTTAGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCC
CTCGAAAATAATGGGGTTGGAGTATCCCTAATAGTGAAAATTTTGATATTTTGAAAATAAAAATG
GGGTTAGAGTATCCCCTCAAAAATAACGA
Found at i:315415 original size:80 final size:79
Alignment explanation
Indices: 314921--315435 Score: 438
Period size: 79 Copynumber: 6.5 Consensus size: 79
314911 GTGGGGTTAA
* * * * * ** *
314921 AGTATCCCCAAGATGAAAAATTTAATATATTGGGAGTAAAATCGGGGTTGGAGTAT-CCCTCAAA
1 AGTATCCCGAATATGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCAAA
314985 AATTAT-GAGGTTGG
66 AA-TATGGAGGTTGG
* * * * * *
314999 AGTATCCCTG-ATGATGAAAA-ATCGATATTTTGAAAATAAAAATGGGGTTTGAGTATCCTCTCA
1 AGTATCCC-GAAT-ATGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCA
** *
315062 AAAATAACGAGGTTAG
64 AAAATATGGAGGTTGG
* * * * *
315078 AGTATCCCTGAA-ATGAAAATTTTAATATTTTGGAAGTAAAAATGGGGTTAGAGTATCCCCTCGA
1 AGTATCCC-GAATATGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCAA
315142 AAATGATGG-GGTTGG
65 AAAT-ATGGAGGTTGG
* ** * * *
315157 AATATCCTTAATAGTGAAAATTTTGATATTTTGAAAATAAAAATGGGGTTGGAGTGTCCCCTCAA
1 AGTATCCCGAATA-TGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCAA
** *
315222 AAATAACGAGGTTAG
65 AAATATGGAGGTTGG
* * * * * ** * * **
315237 AGTAT-CCTAAGATGAAAATTTTAATTTTTTGGAAGTAAAAACAAGGTTGGAGCATCCCTTTGAA
1 AGTATCCCGAATATGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCAAA
315301 AATAATGGA-GTTGG
66 AAT-ATGGAGGTTGG
* *
315315 AGTATCCCTAATAGTGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTAGAGTATCCCCTCAA
1 AGTATCCCGAATA-TGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCAA
315380 AAATGATGGA-GTTGG
65 AAAT-ATGGAGGTTGG
* * **
315395 AGTATCCTCGAA-ATGAAAAATTGGACGTTTTGAAAGTAAAA
1 AGTATCC-CGAATATGAAAATTTTGATATTTTGAAAGTAAAA
315436 TTTAAAAATT
Statistics
Matches: 350, Mismatches: 73, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
78 98 0.28
79 125 0.36
80 124 0.35
81 3 0.01
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.30
Consensus pattern (79 bp):
AGTATCCCGAATATGAAAATTTTGATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCCTCAAA
AATATGGAGGTTGG
Done.