Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold376
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 900718
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 5 of 6
Found at i:695311 original size:13 final size:13
Alignment explanation
Indices: 695293--695318 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
695283 TACAGCAAGT
695293 ATGTATCGATACA
1 ATGTATCGATACA
695306 ATGTATCGATACA
1 ATGTATCGATACA
695319 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:696853 original size:13 final size:13
Alignment explanation
Indices: 696835--696859 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
696825 CATAAAGTGT
696835 TGTATCGATACAA
1 TGTATCGATACAA
696848 TGTATCGATACA
1 TGTATCGATACA
696860 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:696875 original size:32 final size:33
Alignment explanation
Indices: 696815--696882 Score: 120
Period size: 32 Copynumber: 2.1 Consensus size: 33
696805 TTCAACGATT
696815 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
696848 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
696880 TGT
1 TGT
696883 GAGCTACTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 21 0.62
33 13 0.38
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:696940 original size:13 final size:13
Alignment explanation
Indices: 696922--696946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
696912 ATTACTCAAA
696922 TGTATCGATACAT
1 TGTATCGATACAT
696935 TGTATCGATACA
1 TGTATCGATACA
696947 CTGATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:696998 original size:52 final size:52
Alignment explanation
Indices: 696955--697084 Score: 188
Period size: 52 Copynumber: 2.5 Consensus size: 52
696945 CACTGATCTT
* * *
696955 TATATCGATACATACAGGCAAATTTGTCCAGATGTATTGATACACTATGAAA
1 TATATCGATACATACAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
697007 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TATATCGATACATACAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
697059 TGTATCGATACATGCAGGCAAAATTT
1 TATATCGATACATACAGG-AAAATTT
697085 CATATTTTGG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
52 65 0.90
53 7 0.10
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (52 bp):
TATATCGATACATACAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:699245 original size:24 final size:27
Alignment explanation
Indices: 699218--699266 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
699208 TTAAAATTTT
699218 ATTCAT-CG-GGG-ACACTCCAACCTC
1 ATTCATCCGAGGGAACACTCCAACCTC
*
699242 ATTCCTCCGAGGGAACACTCCAACC
1 ATTCATCCGAGGGAACACTCCAACC
699267 CCGTTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 2 0.10
26 3 0.14
27 11 0.52
ACGTcount: A:0.27, C:0.39, G:0.16, T:0.18
Consensus pattern (27 bp):
ATTCATCCGAGGGAACACTCCAACCTC
Found at i:704762 original size:21 final size:20
Alignment explanation
Indices: 704729--704769 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
704719 GAGGTGTTAG
704729 ACATACTAAAAATGCATGAA
1 ACATACTAAAAATGCATGAA
*
704749 ACATAGCTCAAAATGCATGAA
1 ACATA-CTAAAAATGCATGAA
704770 CATGGGCCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (20 bp):
ACATACTAAAAATGCATGAA
Found at i:706921 original size:155 final size:156
Alignment explanation
Indices: 706461--706974 Score: 544
Period size: 155 Copynumber: 3.3 Consensus size: 156
706451 GACACCATGT
* * * * * *
706461 ACTTCTAGGTCGAAA-GTATCCCTTATGGGCATTTTTGTAATTTTT-TAGAACCGAGTCTTAGGT
1 ACTTCTAAGTC-AAAGGTATCCCATAAGGGCATTTTTATAATTTTTCTAGAAACTAGTCTTAGGT
* * * * * *
706524 TCTCACTAGGTCCTCTTTTATGCCGAAGGTGGGTATTTA-AGCTAAGTTCATCCCTTCCATAATC
65 TGTCACTAGGTCCACTTTTATGCCGAAGGTGGGTATTTAGA-ATAGGTTCATCCCATCTATAATC
*
706588 TTTTTTAAGTCCTTAAAAGGTATCAGGC
129 TTTTTTAAGTCCTTAAAGGGTATCAGGC
* * * * * *
706616 ATTTCTAAGTCGAAGGTATCCTC-T-AGGAGTACTTTCATAATTTTTTCCA-AAACTGAGTCTTA
1 ACTTCTAAGTCAAAGGTATCC-CATAAGG-GCATTTTTATAA-TTTTTCTAGAAACT-AGTCTTA
* * * * *
706678 GGTTGTCA-TCGAGTCTACTTTTATGCCGAATGTGAGTATTTAGTATAGGTTCATCCCATCTATA
62 GGTTGTCACTAG-GTCCACTTTTATGCCGAAGGTGGGTATTTAGAATAGGTTCATCCCATCTATA
* * *
706742 ATCTTTTTTAAGTCCTTTAGGGGTATCGGGC
126 ATCTTTTTTAAGTCCTTAAAGGGTATCAGGC
* * *
706773 ACTTCTAAGTCAAAGGTATCCCATAAGGGCATTTTTATAATTTTTCTAGAATCTAGCCCTAGGTT
1 ACTTCTAAGTCAAAGGTATCCCATAAGGGCATTTTTATAATTTTTCTAGAAACTAGTCTTAGGTT
*
706838 GTCACT-GGTCCACTTTTATGTCGGAA-GTGGGTATTTAGAATAGGTTCATCCCATCTATAAT-T
66 GTCACTAGGTCCACTTTTATG-CCGAAGGTGGGTATTTAGAATAGGTTCATCCCATCTATAATCT
* *
706900 CTTTTTAAGTCCTTCAAGGGTATCAGAC
130 -TTTTTAAGTCCTTAAAGGGTATCAGGC
* **
706928 ACTTCTAAATTGAAGGTATCCCATAAGGGCATTTTTATAATATTTTC
1 ACTTCTAAGTCAAAGGTATCCCATAAGGGCATTTTTATAAT-TTTTC
706975 AAATCGAGTC
Statistics
Matches: 298, Mismatches: 46, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
154 5 0.02
155 130 0.44
156 42 0.14
157 118 0.40
158 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (156 bp):
ACTTCTAAGTCAAAGGTATCCCATAAGGGCATTTTTATAATTTTTCTAGAAACTAGTCTTAGGTT
GTCACTAGGTCCACTTTTATGCCGAAGGTGGGTATTTAGAATAGGTTCATCCCATCTATAATCTT
TTTTAAGTCCTTAAAGGGTATCAGGC
Found at i:707159 original size:149 final size:148
Alignment explanation
Indices: 706937--707360 Score: 430
Period size: 149 Copynumber: 2.9 Consensus size: 148
706927 CACTTCTAAA
* * * *
706937 TTGAAGGTAT-CCCATAAGGGCATTTTTATAATATTTTC-A-AATCGAGTCTTAATTTATCACCG
1 TTGAAGGTATACCTATAAGGGCATTTTTATAAT-TTTTCTAGAACCGAGTCCTAATTTGTCACCG
* * * *
706999 GGTCAT-TTCCATGCCGAGGCTACATATTAGGCATAGGCTT-GCTTTTCCTTTTTAAGTCTTTTA
65 AGTC-TCTTCCATGCCGAGG-TACGTATTAGGCGTAGG-TTCGCTTTTCCTTTTTAAGTCCTTTA
* * * *
707062 GAGTTAGCGAGATACTTTTATG
127 GAGTTAGCAAAATACATTCATG
* * *
707084 TTGAAGGTATACCTATAAGGGTATTTTTATAATTTTTCTAGAACCAAATCCTAATTTGTCACCGA
1 TTGAAGGTATACCTATAAGGGCATTTTTATAATTTTTCTAGAACCGAGTCCTAATTTGTCACCGA
** ** * * *
707149 GTCTCTTCCATGTAGAAGGTACGTATTAAACGTAGGTTGGCTTTTCCTTTTTAACTCCTTTAGGG
66 GTCTCTTCCATGCCG-AGGTACGTATTAGGCGTAGGTTCGCTTTTCCTTTTTAAGTCCTTTAGAG
*
707214 TTATCAAAATACATTCATG
130 TTAGCAAAATACATTCATG
* * * *
707233 TCGAAGGTATACCCT-T-AGGGACATTTTCATAATTTTTCTAGAACTGAGGCCTAATTTGTCACC
1 TTGAAGGTATA-CCTATAAGGG-CATTTTTATAATTTTTCTAGAACCGAGTCCTAATTTGTCACC
* ** * * *
707296 GAGTCACTTATATGCCAAAGGTACGTATTAGGTGTAGGTTCGCTTTTCCTTTTGAAGTCCTTTAG
64 GAGTCTCTTCCATGCC-GAGGTACGTATTAGGCGTAGGTTCGCTTTTCCTTTTTAAGTCCTTTAG
707361 GATCATTGAG
Statistics
Matches: 227, Mismatches: 41, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
147 15 0.07
148 28 0.12
149 178 0.78
150 6 0.03
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (148 bp):
TTGAAGGTATACCTATAAGGGCATTTTTATAATTTTTCTAGAACCGAGTCCTAATTTGTCACCGA
GTCTCTTCCATGCCGAGGTACGTATTAGGCGTAGGTTCGCTTTTCCTTTTTAAGTCCTTTAGAGT
TAGCAAAATACATTCATG
Found at i:707576 original size:11 final size:11
Alignment explanation
Indices: 707554--707583 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
707544 GAGTCTTAGG
707554 TTCTTT-ATCC
1 TTCTTTAATCC
707564 TTCTTTAATCC
1 TTCTTTAATCC
707575 TTCTTTAAT
1 TTCTTTAAT
707584 AATAATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.32
11 13 0.68
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (11 bp):
TTCTTTAATCC
Found at i:712077 original size:11 final size:11
Alignment explanation
Indices: 712045--712078 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
712035 ATATGATTAT
*
712045 ATAATACAAAA
1 ATAATATAAAA
712056 ATAATATAAAA
1 ATAATATAAAA
712067 ATAAT-TAAAA
1 ATAATATAAAA
712077 AT
1 AT
712079 GCACAACACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:713364 original size:2 final size:2
Alignment explanation
Indices: 713351--713380 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
713341 TGCAAAAGTA
*
713351 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
713381 TTTATATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:714151 original size:2 final size:2
Alignment explanation
Indices: 714144--714180 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
714134 GAAAAGAATC
* *
714144 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA CA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
714181 CCAGAGCTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:721872 original size:14 final size:13
Alignment explanation
Indices: 721843--721869 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
721833 AAGGGTAAAG
721843 AGTAAAAAGACTA
1 AGTAAAAAGACTA
721856 AGTAAAAAGACTA
1 AGTAAAAAGACTA
721869 A
1 A
721870 AGTGGAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (13 bp):
AGTAAAAAGACTA
Found at i:724804 original size:26 final size:26
Alignment explanation
Indices: 724769--724818 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
724759 ATTTGCCACT
*
724769 TTTTTCTTTTTCTCTCT-CTTTTTTTC
1 TTTTTCTTTTGCTCT-TGCTTTTTTTC
724795 TTTTTCTTTTGCTCTTGCTTTTTT
1 TTTTTCTTTTGCTCTTGCTTTTTT
724819 ATTGAATCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.00, C:0.20, G:0.04, T:0.76
Consensus pattern (26 bp):
TTTTTCTTTTGCTCTTGCTTTTTTTC
Found at i:727485 original size:30 final size:30
Alignment explanation
Indices: 727450--727507 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
727440 TGAAATCATT
*
727450 AAAGGAAAATGAGAATTCTATCACCAAATC
1 AAAGGAAAATAAGAATTCTATCACCAAATC
*
727480 AAAGGAAAATAAGAATTTTATCACCAAA
1 AAAGGAAAATAAGAATTCTATCACCAAA
727508 ATATGATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.21
Consensus pattern (30 bp):
AAAGGAAAATAAGAATTCTATCACCAAATC
Found at i:728685 original size:81 final size:81
Alignment explanation
Indices: 728569--728795 Score: 332
Period size: 80 Copynumber: 2.8 Consensus size: 81
728559 AGAGAGTGGA
* * * *
728569 GTTGGAGTATCCTCGAAGATGGAATATTTGATATTTTTAGAAGTAAAAACGGGGTTGGAGTGTCC
1 GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
728634 CCTAAAAAATGGCAG-G
66 CCTAAAAAATGG-AGAG
* *
728650 GTTGGAGTATCCTCGAAGGTGGAAAATCTGATATTTTTAGGAGT-AAAATGGGGTTGGAGTATCC
1 GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
** *
728714 CCTCGAAAATGGTGAG
66 CCTAAAAAATGGAGAG
* *
728730 GTTGGAGTATCCTCGAAAATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGAAGTATCC
1 GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
728795 C
66 C
728796 TTCGGAAATG
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 70 0.53
81 60 0.46
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.30
Consensus pattern (81 bp):
GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
CCTAAAAAATGGAGAG
Found at i:728746 original size:80 final size:81
Alignment explanation
Indices: 728569--728821 Score: 357
Period size: 81 Copynumber: 3.1 Consensus size: 81
728559 AGAGAGTGGA
* * * *
728569 GTTGGAGTATCCTCGAAGATGGAATATTTGATATTTTTAGAAGTAAAAACGGGGTTGGAGTGTCC
1 GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
** *
728634 CCTAAAAAATGG-CAGG
66 CCTCGAAAATGGTGA-G
* *
728650 GTTGGAGTATCCTCGAAGGTGGAAAATCTGATATTTTTAGGAGT-AAAATGGGGTTGGAGTATCC
1 GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
728714 CCTCGAAAATGGTGAG
66 CCTCGAAAATGGTGAG
* *
728730 GTTGGAGTATCCTCGAAAATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGAAGTATCC
1 GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
* * *
728795 CTTCGGAAATGGTGGG
66 CCTCGAAAATGGTGAG
728811 GTTGGAGTATC
1 GTTGGAGTATC
728822 TCCTTTTAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
80 70 0.45
81 84 0.55
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (81 bp):
GTTGGAGTATCCTCGAAGATGGAAAATTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCC
CCTCGAAAATGGTGAG
Found at i:731251 original size:20 final size:20
Alignment explanation
Indices: 731193--731254 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
731183 AATTGTCTGC
* ***
731193 ATGTATCGATACATTGAGAA
1 ATGTATCGATACATTCACTT
* *
731213 ATGTATTGATACGTTCACTT
1 ATGTATCGATACATTCACTT
731233 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
731253 AT
1 AT
731255 TTTATCAACA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:732983 original size:165 final size:164
Alignment explanation
Indices: 732800--733233 Score: 418
Period size: 165 Copynumber: 2.6 Consensus size: 164
732790 CTCGATTTTT
* * *
732800 CAAAAATAAGGGAATTTCAAAGGAAAAATGCAAAACTTATGGAAAT-AAATGAATTTTCAAAACT
1 CAAAAACAAGAGAATTTCAAAGGAAAAATG-AAAACTTAT-GAAATAAAAAGAATTTTCAAAACT
* * *
732864 GATTTAGTATGATTTAATTGATAATATTTGAAGAATTTTAAAAATT-ATAAACTAAG-AAAAATC
64 GATTTAGTATGAATTAAATGATAATATTTGAAGAATTTT-AAAATTCAAAAACT-AGTAAAAATC
* *
732927 CCTCCAAAAATAA-TTATGGAGAAGAAAAATTCGTATTC
127 CCTCCAAAAA-AATTTACGGAGAAGAAAAATTCATATTC
* * * * **
732965 CGAAAACAAGAGAATTTC-AAGCAAAAAAAGAAAAATTAATGAAATAAAAAGAATTTTTTAAACT
1 CAAAAACAAGAGAATTTCAAAG-GAAAAATGAAAACTT-ATGAAATAAAAAGAATTTTCAAAACT
* * * * *
733029 GATTTATTATGAGTTAAATAATAATATTTGACA-AATTTTAAAATTCAAAAACTGGTGAAAATCC
64 GATTTAGTATGAATTAAATGATAATATTTGA-AGAATTTTAAAATTCAAAAACTAGTAAAAATCC
* * * *
733093 TTTCAAAAAAATTTACGGAGAAGAAAACTTCATATTT
128 CTCCAAAAAAATTTACGGAGAAGAAAAATTCATATTC
* * * * *
733130 CAAAAACAAGGAGAATTCCAAAAG-AAAATTAATAACTCATGAAATAAAAAGAATTTTTCAAAAT
1 CAAAAACAA-GAGAATTTCAAAGGAAAAATGAA-AACTTATGAAATAAAAAGAA-TTTTCAAAAC
* *
733194 TGATTT-G-ATGGTAATTAAATGATTATATTTAAAGAATTTT
63 TGATTTAGTAT-G-AATTAAATGATAATATTTGAAGAATTTT
733234 GATGTCCAAA
Statistics
Matches: 217, Mismatches: 38, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
164 25 0.12
165 143 0.66
166 47 0.22
167 2 0.01
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (164 bp):
CAAAAACAAGAGAATTTCAAAGGAAAAATGAAAACTTATGAAATAAAAAGAATTTTCAAAACTGA
TTTAGTATGAATTAAATGATAATATTTGAAGAATTTTAAAATTCAAAAACTAGTAAAAATCCCTC
CAAAAAAATTTACGGAGAAGAAAAATTCATATTC
Found at i:734752 original size:20 final size:21
Alignment explanation
Indices: 734701--734753 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
734691 ACCAATCACC
*
734701 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
* *
734722 AGTATCAATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
734742 TGTATCGATACA
1 TGTATCGATACA
734754 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 13 0.50
21 12 0.46
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:734759 original size:13 final size:13
Alignment explanation
Indices: 734741--734765 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
734731 ACATTTGGTC
734741 ATGTATCGATACA
1 ATGTATCGATACA
734754 ATGTATCGATAC
1 ATGTATCGATAC
734766 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:735356 original size:22 final size:23
Alignment explanation
Indices: 735317--735361 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
735307 TTTCCTTTTC
735317 TCTCCCCCTTAATCAAAAAAATT
1 TCTCCCCCTTAATCAAAAAAATT
* *
735340 TCTCCCCTTTAAT-AAAACAATT
1 TCTCCCCCTTAATCAAAAAAATT
735362 GCCTTTAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.33
Consensus pattern (23 bp):
TCTCCCCCTTAATCAAAAAAATT
Found at i:743509 original size:20 final size:21
Alignment explanation
Indices: 743462--743514 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
743452 ACTAATCACT
*
743462 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
743483 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
743503 TGTATCGATACA
1 TGTATCGATACA
743515 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:743520 original size:13 final size:13
Alignment explanation
Indices: 743502--743526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
743492 ACATTTGGTC
743502 ATGTATCGATACA
1 ATGTATCGATACA
743515 ATGTATCGATAC
1 ATGTATCGATAC
743527 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:746172 original size:23 final size:23
Alignment explanation
Indices: 746142--746186 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
746132 CCCGATCCAT
746142 TGTAAGGAAGAGTTACCTTTTCA
1 TGTAAGGAAGAGTTACCTTTTCA
746165 TGTAAGGAAGAGTTACCTTTTC
1 TGTAAGGAAGAGTTACCTTTTC
746187 TTAAGCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (23 bp):
TGTAAGGAAGAGTTACCTTTTCA
Found at i:754874 original size:51 final size:51
Alignment explanation
Indices: 754741--755073 Score: 170
Period size: 51 Copynumber: 6.7 Consensus size: 51
754731 TAACTCTACT
* * * * * *
754741 AATCTTTCACATAATTGAATAAAGCGAAC--AAA-AAAGACTAAC-CCTATT
1 AATCTTTTACATAAATGAATAAAGTGAACAAAAAGAAAAACCAACTCC-ATC
*** * * * * *
754789 AATCTTTTACATAACCAAATGAATTGGACCAAAAGAAAAACCAACTCCGTC
1 AATCTTTTACATAAATGAATAAAGTGAACAAAAAGAAAAACCAACTCCATC
* * * *
754840 AATCTTCTACATAAATGAATAAAGTGAACAAAAAGAAATA-TAAGTCCATC
1 AATCTTTTACATAAATGAATAAAGTGAACAAAAAGAAAAACCAACTCCATC
* * * * * * * * *
754890 GATCTTTTATATAAACCGAATAAAGCGGATAGAAAGAAAATCCAACTCCATT
1 AATCTTTTACATAAA-TGAATAAAGTGAACAAAAAGAAAAACCAACTCCATC
* * * * *
754942 GATCTTTGACAT-AATCGATTAAAGT-AGACCAAAAGAAAAACCAACTCCACC
1 AATCTTTTACATAAAT-GAATAAAGTGA-ACAAAAAGAAAAACCAACTCCATC
* * * * * *
754993 AATCTTTTATATAACTAAATAAAGTG---AAAAA-AAAAATCGACTCCATT
1 AATCTTTTACATAAATGAATAAAGTGAACAAAAAGAAAAACCAACTCCATC
*
755040 ATTCTTTTACAT-AATCGAATAAAGT-AGACAAAAA
1 AATCTTTTACATAAAT-GAATAAAGTGA-ACAAAAA
755074 AATCGATTCC
Statistics
Matches: 206, Mismatches: 64, Indels: 28
0.69 0.21 0.09
Matches are distributed among these distances:
46 2 0.01
47 30 0.15
48 25 0.12
50 27 0.13
51 101 0.49
52 21 0.10
ACGTcount: A:0.48, C:0.18, G:0.10, T:0.25
Consensus pattern (51 bp):
AATCTTTTACATAAATGAATAAAGTGAACAAAAAGAAAAACCAACTCCATC
Found at i:754965 original size:102 final size:97
Alignment explanation
Indices: 754789--755073 Score: 245
Period size: 102 Copynumber: 2.8 Consensus size: 97
754779 TAACCCTATT
* ** * * *
754789 AATCTTTTACATAACCAAATGAATTGGACCAAAAGAAAAACCAACTCCGTCAATCTTCTACATAA
1 AATCTTTTATATAACCAAAT-AAAGGGA--AAAAGAAAATCCAACTCCAT-TATCTT-TACAT-A
* * * *
754854 AT-GAATAAAGT-GAACAAAAAGAAATA-TAAGTCCATC
60 ATCGAATAAAGTAG-ACAAAAAGAAAAACCAACTCCACC
* *
754890 GATCTTTTATATAAACCGAATAAAGCGGATAGAAAGAAAATCCAACTCCATTGATCTTTGACATA
1 AATCTTTTATAT-AACCAAATAAAG-GGA-A-AAAGAAAATCCAACTCCATT-ATCTTT-ACATA
* *
754955 ATCGATTAAAGTAGACCAAAAGAAAAACCAACTCCACC
60 ATCGAATAAAGTAGACAAAAAGAAAAACCAACTCCACC
* * * *
754993 AATCTTTTATATAACTAAATAAAGTGAAAAAAAAAAT-CGACTCCATTATTCTTTTACATAATCG
1 AATCTTTTATATAACCAAATAAAGGGAAAAAGAAAATCCAACTCCATTA-TC-TTTACATAATCG
755057 AATAAAGTAGACAAAAA
64 AATAAAGTAGACAAAAA
755074 AATCGATTCC
Statistics
Matches: 151, Mismatches: 23, Indels: 23
0.77 0.12 0.12
Matches are distributed among these distances:
97 1 0.01
98 35 0.23
99 11 0.07
100 1 0.01
101 19 0.13
102 65 0.43
103 19 0.13
ACGTcount: A:0.48, C:0.18, G:0.10, T:0.25
Consensus pattern (97 bp):
AATCTTTTATATAACCAAATAAAGGGAAAAAGAAAATCCAACTCCATTATCTTTACATAATCGAA
TAAAGTAGACAAAAAGAAAAACCAACTCCACC
Found at i:755107 original size:47 final size:47
Alignment explanation
Indices: 754943--755112 Score: 137
Period size: 47 Copynumber: 3.5 Consensus size: 47
754933 AACTCCATTG
* * * * *
754943 ATCTTTGACATAATCGATTAAAGTAGACCAAAAGAAAAACCAACTCCACCA
1 ATCTTTTACATACT-GAATAAAGTAGA--AAAA-AAAAATCGACTCCACCA
* * **
754994 ATCTTTTATATAACTAAATAAAGT-GAAAAAAAAAATCGACTCCATTA
1 ATCTTTTACAT-ACTGAATAAAGTAGAAAAAAAAAATCGACTCCACCA
* * * *
755041 TTCTTTTACATAATCGAATAAAGTAG-ACAAAAAAATCGATTCCACCA
1 ATCTTTTACATACT-GAATAAAGTAGAAAAAAAAAATCGACTCCACCA
*
755088 ATCTTTTACATCACTGAATATAGTA
1 ATCTTTTACAT-ACTGAATAAAGTA
755113 AACATAAAGA
Statistics
Matches: 95, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
46 2 0.02
47 66 0.69
48 7 0.07
50 2 0.02
51 16 0.17
52 2 0.02
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (47 bp):
ATCTTTTACATACTGAATAAAGTAGAAAAAAAAAATCGACTCCACCA
Found at i:755127 original size:98 final size:97
Alignment explanation
Indices: 754934--755114 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 97
754924 AGAAAATCCA
*
754934 ACTCCATTGATCTTTGACATAATCGATTAAAGTAGACCAAAAGAAAAACCAACTCCACCAATCTT
1 ACTCCATTGATCTTTGACATAATCGAATAAAGTAGACC-AAAGAAAAACCAACTCCACCAATCTT
* *
754999 TTATATAACTAAATAAAGTGAAAAAAAAAATCG
65 TTACATAACTAAATAAAGTAAAAAAAAAAATCG
* * * *
755032 ACTCCATT-ATTCTTTTACATAATCGAATAAAGTAGA-C-AA-AAAAATCGATTCCACCAATCTT
1 ACTCCATTGA-TCTTTGACATAATCGAATAAAGTAGACCAAAGAAAAACCAACTCCACCAATCTT
* * *
755093 TTACATCACTGAATATAGTAAA
65 TTACATAACTAAATAAAGTAAA
755115 CATAAAGAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
94 36 0.50
95 2 0.03
97 2 0.03
98 32 0.44
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (97 bp):
ACTCCATTGATCTTTGACATAATCGAATAAAGTAGACCAAAGAAAAACCAACTCCACCAATCTTT
TACATAACTAAATAAAGTAAAAAAAAAAATCG
Found at i:758225 original size:51 final size:51
Alignment explanation
Indices: 758148--758282 Score: 155
Period size: 51 Copynumber: 2.6 Consensus size: 51
758138 TGCCCACATG
* * *
758148 TATTGCTACATTGAAAAATGTGTCGATACATTTAGGTGAAAAACCCAAAATA
1 TATTGATACAATGAAAAATGTATCGATACATTTAGGT-AAAAACCCAAAATA
* * * * *
758200 TATTGATACAATG-AAAATGTATCGATACATTTGGGTTAAAACCTAGAATG
1 TATTGATACAATGAAAAATGTATCGATACATTTAGGTAAAAACCCAAAATA
* * *
758250 TATCGAAATAATGAAAAATGTATCGATACATTT
1 TATTGATACAATGAAAAATGTATCGATACATTT
758283 TCTTTCTAGA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
50 20 0.28
51 40 0.56
52 11 0.15
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (51 bp):
TATTGATACAATGAAAAATGTATCGATACATTTAGGTAAAAACCCAAAATA
Found at i:758385 original size:21 final size:20
Alignment explanation
Indices: 758340--758389 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
758330 TTTCAGACAC
*
758340 GTATCAATACATTCACTTAT
1 GTATCGATACATTCACTTAT
758360 GTATCGATACATTCACTTATT
1 GTATCGATACATTCACTTA-T
758381 GTATCGATA
1 GTATCGATA
758390 TAAATTGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
GTATCGATACATTCACTTAT
Found at i:759242 original size:60 final size:60
Alignment explanation
Indices: 759178--759298 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 60
759168 ACATTGTATG
* *
759178 TTGAAAAAGATTTTTGATAAATGTGCCAATGTGCAGATTCAAGACCTACGACACTAGTCT
1 TTGAAAAAGATTTTTGAAAAATGCGCCAATGTGCAGATTCAAGACCTACGACACTAGTCT
* * *
759238 TTGAAAAGGATTTTTGAAAAATGCGCCAATGTGCAGATTCAAGGCCTACGACACTGGTCT
1 TTGAAAAAGATTTTTGAAAAATGCGCCAATGTGCAGATTCAAGACCTACGACACTAGTCT
759298 T
1 T
759299 AAAGATGATA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (60 bp):
TTGAAAAAGATTTTTGAAAAATGCGCCAATGTGCAGATTCAAGACCTACGACACTAGTCT
Found at i:759352 original size:52 final size:52
Alignment explanation
Indices: 759262--759935 Score: 597
Period size: 52 Copynumber: 12.9 Consensus size: 52
759252 TGAAAAATGC
* * *
759262 GCCAATGTGCAGATTCAAGGCCTA-CGACACTGGTCTTAAAGATGATAAAGGT
1 GCCAATGTGCTGATTCAAGGCC-AGCGACATTGGACTTAAAGATGATAAAGGT
* * *
759314 GCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTAAAGATGAT-AAGAAT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAG-GT
* * *
759366 GCCAATGTGCTGATTCAAGGCCATCAACATTGGACTTATAGATGATAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
* ** * * * * *
759418 ACCAAAATGCTGATTCAAGGCTAGCGATATTAGACTTAAAGATCA-GAAGAGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAG-GT
* * * *
759470 GCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAATGATGA-GAAGTGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAG-GT
* * * *
759522 GCCAATGTGCTGATTCAAGGCCAACTACAATGGACTTAAAGATGATAAAGGA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
* * ** * * * * *
759574 GCCAACGTGCTGATCCAAAACCAGCGATATTAGACTTAAATATGAGAAAAGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
* * * * * * *
759626 GCTAATGTGCTAATTCAAGGCTAGTGACATTGGTCTTAATGATGA-GAAGAGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAG-GT
* * * * * *
759678 GCTAATGTGCTAACTCAAGGCTAGCGACATTAGACTTAAAGACGATAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
* * * *
759730 GCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAAATGATAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
* * * *
759782 GCAAATGTGTTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAT-AAGTGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAG-GT
* * * * * *
759834 GCTAATGTGCTAATCTAAAGCCCA-CTGATATTGGACATAAAGATGATAAAGGT
1 GCCAATGTGCTGAT-TCAAGGCCAGC-GACATTGGACTTAAAGATGATAAAGGT
** * * ** ** *
759887 GCCAACATGTTGATCCAAGGCCAGTAATGTTAGACTTAAAGATGATAAA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAA
759936 TTTTAACGAA
Statistics
Matches: 497, Mismatches: 113, Indels: 24
0.78 0.18 0.04
Matches are distributed among these distances:
51 12 0.02
52 436 0.88
53 46 0.09
54 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (52 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
Found at i:760997 original size:65 final size:65
Alignment explanation
Indices: 760887--761017 Score: 183
Period size: 65 Copynumber: 2.0 Consensus size: 65
760877 AGGTACAATT
*
760887 TGGTATACTATTTGATAGACAAGTGATTAGGTGATAAAAAGGATGATTTTTAGGCAAAAGATGCC
1 TGGTATACTATTTGATAGACAAGTGACTAGGTGATAAAAAGGATGATTTTTAGGCAAAAGATGCC
* * * * **
760952 TGGTATACTATTTGATAGATAAGTGACTAGGTGA-CAAGAGTGATGATTTTTGGGTGAAAGATGC
1 TGGTATACTATTTGATAGACAAGTGACTAGGTGATAAAAAG-GATGATTTTTAGGCAAAAGATGC
761016 C
65 C
761017 T
1 T
761018 CTAACAACCA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 4 0.07
65 54 0.93
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.32
Consensus pattern (65 bp):
TGGTATACTATTTGATAGACAAGTGACTAGGTGATAAAAAGGATGATTTTTAGGCAAAAGATGCC
Found at i:767090 original size:48 final size:48
Alignment explanation
Indices: 767005--767371 Score: 315
Period size: 48 Copynumber: 7.8 Consensus size: 48
766995 CAAATTGGCA
* * * *
767005 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
767053 TAAGACCAAGGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * * * *
767102 TAAG-TCAATGTTGTTGGCCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * *
767149 TAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
767188 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
** * *
767236 TAAGACCAATGTCGCTGGCCTTGAAAAAACACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * ** * ***
767285 TAAG-TCAATGTCGTTGGCCTTGAATCAGCGTATTCGCACCAACATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTGTCTT
* * ***
767333 TAAAACCAATGTTGCCATCCTTGAATCAGCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
767372 TAAGCCCAAT
Statistics
Matches: 253, Mismatches: 52, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
39 34 0.13
47 7 0.03
48 171 0.68
49 41 0.16
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
Found at i:767184 original size:96 final size:96
Alignment explanation
Indices: 767020--767499 Score: 411
Period size: 96 Copynumber: 5.2 Consensus size: 96
767010 CCAATATCAC
* * *
767020 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAGGTCGCTGGCCTTGAATCAGCAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCAC
*
767085 ATTGGCACCTTCATCTTTAAGTCAATGTTGT
66 ATTGGCACCTTCATCTTTAAGTCAATGTCGT
* *
767116 TGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCAC
* * *
767181 ATTGG------CA----TAAGCCCAATATCGC
66 ATTGGCACCTTCATCTTTAAG-TCAATGTCGT
* * * ** *
767203 TAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAAAAAACAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCAC
767268 ATTGGCACCTTCATCTTTAAGTCAATGTCGT
66 ATTGGCACCTTCATCTTTAAGTCAATGTCGT
* * *** * * *
767299 TGGCCTTGAATCAGCGTATTCGCACCAACATCTTTAAAACCAATGTTGCCATCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCA
* *
767364 CATTGG------CA----TAAGCCCAATATCGT
65 CATTGGCACCTTCATCTTTAAG-TCAATGTCGT
* * * * * * *
767387 TGGCTTTGAATCGGCATGTTGGCACCTTCTCTTT------AA-GACGCTCGCCTTGTATCAGCAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCAC
** * *
767445 ATTGGCATTTTCATCTTTAAGTCTGATATCGT
66 ATTGGCACCTTCATCTTTAAGTC-AATGTCGT
767477 TGGCCTTGAATCAGCATATTGGC
1 TGGCCTTGAATCAGCATATTGGC
767500 CTCTTTAACA
Statistics
Matches: 305, Mismatches: 55, Indels: 54
0.74 0.13 0.13
Matches are distributed among these distances:
80 21 0.07
81 2 0.01
86 6 0.02
87 77 0.25
88 29 0.10
89 1 0.00
90 33 0.11
91 2 0.01
93 2 0.01
96 95 0.31
97 37 0.12
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (96 bp):
TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCAC
ATTGGCACCTTCATCTTTAAGTCAATGTCGT
Found at i:767203 original size:135 final size:135
Alignment explanation
Indices: 767064--767313 Score: 333
Period size: 135 Copynumber: 1.9 Consensus size: 135
767054 AAGACCAAGG
* * * * **
767064 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG-TCAATGTTGTTGGCCTTGAATC
1 TCGCTAGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATGTCGCTGGCCTTGAAAA
* * *
767128 AACATATTGGCACCTT-GTCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAG
65 AACACATTGGCACCTTCATCTTT-AAACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATAAG
767192 CCCAATA
129 CCCAATA
* *
767199 TCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAAAAA
1 TCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAAAAA
** * *
767264 ACACATTGGCACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAGC
66 ACACATTGGCACCTTCATCTTTAAACCAATGTCGCTAGCCTTGAATCAGC
767314 GTATTCGCAC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
134 8 0.08
135 85 0.87
136 5 0.05
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (135 bp):
TCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAAAAA
ACACATTGGCACCTTCATCTTTAAACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATAAGCC
CAATA
Found at i:767271 original size:183 final size:184
Alignment explanation
Indices: 766961--767425 Score: 734
Period size: 183 Copynumber: 2.5 Consensus size: 184
766951 ACCTTTCTTT
* *
766961 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCAAATTGGCATAAGCCCAATATCACTGGCCT
1 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
** *
767026 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAGGTCGCTGGCCTTGAATCAGCACATTGGC
66 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAGGTCGCTGGCCTTGAAAAAACACATTGGC
* * **
767091 ACCTTCATCTTTAAGTCAATGTTGTTGGCCTTGAATCAACATATTGGCACC-TT
131 ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTCGCACCAAC
* *
767144 GTCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCT
1 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
*
767209 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAAAAAACACATTGGC
66 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAGGTCGCTGGCCTTGAAAAAACACATTGGC
* *
767274 ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAGCGTATTCGCACCAAC
131 ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTCGCACCAAC
* * * *
767328 ATCTTTAAAACCAATGTTGCCATCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTGGCTT
1 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* * *
767393 TGAATCGGCATGTTGGCACCTTCTCTTTAAGAC
66 TGAATCAGCATATTGGCACCTTGTCTTTAAGAC
767426 GCTCGCCTTG
Statistics
Matches: 258, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
183 169 0.66
184 89 0.34
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (184 bp):
ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAGGTCGCTGGCCTTGAAAAAACACATTGGC
ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTCGCACCAAC
Found at i:768646 original size:48 final size:48
Alignment explanation
Indices: 768560--769011 Score: 332
Period size: 48 Copynumber: 9.8 Consensus size: 48
768550 CACATTGGCA
* * * * *
768560 TAAGCCCAATATCGCTGGCCTTGAATCAACATAATGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
*
768608 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * ** * *
768657 TAAG-TCAATGTCGTTCACCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * *
768704 TAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
768743 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
** * *
768791 TAAGACCAATGTCGCTGGCCTTGAAAAAACACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
** * ** ***
768840 TAAG-TTAATGTCGTTGGCCTTGAATCAGCGTATTGGCACCAACATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTGTCTT
* * ***
768888 TAAAACCAATGTTGCCATCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * * * **
768927 TAAGCCCAATATTGCTGGCTTTGAATCGGCATGTTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
768975 TAAGACCAATGTCGCTCGCCTTGTATCAGCACATTGG
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
769012 TATTTTCATC
Statistics
Matches: 308, Mismatches: 73, Indels: 46
0.72 0.17 0.11
Matches are distributed among these distances:
39 63 0.20
47 7 0.02
48 197 0.64
49 41 0.13
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
Found at i:768824 original size:87 final size:87
Alignment explanation
Indices: 768674--769011 Score: 343
Period size: 87 Copynumber: 3.8 Consensus size: 87
768664 ATGTCGTTCA
* *
768674 CCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATT
1 CCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACATT
*
768739 GGCATAAGCCCAATATCGCTAG
66 GGCATAAGCCCAATATCGCTGG
* * ** *
768761 CCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAAAAAACACATT
1 CCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACATT
* * ** *
768826 GGCACCTTCATCTTTAAGTTAATGTCGTTGG
66 GGCA---TAAGC-CCAA--T-A--TCGCTGG
* *** * * *
768857 CCTTGAATCAGCGTATTGGCACCAACATCTTTAAAACCAATGTTGCCATCCTTGAATCAGCACAT
1 CCTTGAATCAGCATATTGGCACC-TTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACAT
*
768922 TGGCATAAGCCCAATATTGCTGG
65 TGGCATAAGCCCAATATCGCTGG
* * * * * *
768945 CTTTGAATCGGCATGTTGGCACCTTGTCTTTAAGACCAATGTCGCTCGCCTTGTATCAGCACATT
1 CCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACATT
769010 GG
66 GG
769012 TATTTTCATC
Statistics
Matches: 197, Mismatches: 44, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
87 97 0.49
88 24 0.12
90 4 0.02
91 3 0.02
93 3 0.02
94 4 0.02
96 27 0.14
97 35 0.18
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (87 bp):
CCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACATT
GGCATAAGCCCAATATCGCTGG
Found at i:768852 original size:183 final size:183
Alignment explanation
Indices: 768517--769059 Score: 809
Period size: 183 Copynumber: 3.0 Consensus size: 183
768507 ACCTTTCTTT
*
768517 ATCTTTAAAACCAATTTTGCTACCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTT
1 ATCTTTAAAACCAATGTTGCTACCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTT
* *
768582 GAATCAACATAATGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
66 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* ** * **
768647 CCTTCATCTTTAAGTCAATGTCGTTCACCTTGAATCAACATATTGGCACC-TT
131 CCTTCATCTTTAAGTTAATGTCGTTGGCCTTGAATCAGCATATTGGCACCAAC
* *
768699 GTCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCT
1 ATCTTTAAAACCAATGTTGCTA-CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
** *
768764 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAAAAAACACATTGGC
65 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
*
768829 ACCTTCATCTTTAAGTTAATGTCGTTGGCCTTGAATCAGCGTATTGGCACCAAC
130 ACCTTCATCTTTAAGTTAATGTCGTTGGCCTTGAATCAGCATATTGGCACCAAC
* * *
768883 ATCTTTAAAACCAATGTTGCCATCCTTGAATCAGCACATTGGCATAAGCCCAATATTGCTGGCTT
1 ATCTTTAAAACCAATGTTGCTA-CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* * * * *
768948 TGAATCGGCATGTTGGCACCTTGTCTTTAAGACCAATGTCGCTCGCCTTGTATCAGCACATTGGT
65 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
** * *
769013 ATTTTCATCTTTAAGTTTGATATCGTTGGCCTTGAATCAGCATATTG
130 ACCTTCATCTTTAAG-TTAATGTCGTTGGCCTTGAATCAGCATATTG
769060 TCATCTTTAA
Statistics
Matches: 324, Mismatches: 34, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
182 20 0.06
183 147 0.45
184 129 0.40
185 28 0.09
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (183 bp):
ATCTTTAAAACCAATGTTGCTACCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTT
GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
CCTTCATCTTTAAGTTAATGTCGTTGGCCTTGAATCAGCATATTGGCACCAAC
Found at i:768860 original size:135 final size:135
Alignment explanation
Indices: 768608--768877 Score: 319
Period size: 135 Copynumber: 2.0 Consensus size: 135
768598 ACCTTGTCTT
* * * *
768608 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCAATGTCGTTC
1 TAAGACCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGCCAATGTCGCTC
** * * *
768673 ACCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACAT
66 ACCTTGAAAAAACACATTGGCACCTTATCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACAT
768738 TGGCA
131 TGGCA
* * *
768743 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCT
1 TAAGACCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG-CCAATGTCGCT
** *** * * **
768807 GGCCTTGAAAAAACACATTGGCACCTTCATCTTT-AAGTTAATGTCGTTGGCCTTGAATCAGCGT
65 CACCTTGAAAAAACACATTGGCACCTT-ATCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCAC
768871 ATTGGCA
129 ATTGGCA
768878 CCAACATCTT
Statistics
Matches: 112, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
134 8 0.07
135 99 0.88
136 5 0.04
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (135 bp):
TAAGACCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGCCAATGTCGCTC
ACCTTGAAAAAACACATTGGCACCTTATCTTTAAAACCAATGTCGCTAGCCTTGAATCAGCACAT
TGGCA
Found at i:770207 original size:48 final size:48
Alignment explanation
Indices: 770123--771126 Score: 765
Period size: 48 Copynumber: 21.8 Consensus size: 48
770113 CACATTGGCA
* * * * * *
770123 TAAGCCCAATATCGTTGGCCTCGAATCAGCATATTGGAACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
770171 TAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * * *
770220 TAAG-TCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * *
770267 TAA-ATCCAATGTTGTTGGCCTTGAATCAGCACATT---A----G-C-A
1 TAAGA-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
770306 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
770354 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * ** * *
770403 TAAG-TCAATGTCG-TCGGCCTTGAATCAACGTATTGGCACC-GGCAACTTT
1 TAAGACCAATGTCGCT-GGCCTTGAATCAGCACATTGGCACCTTG--TC-TT
* * *
770452 TAA-ACCAATGTTGCTAGCCTTGAGTCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
770490 TAAGCCCAATATCGCTGGCCTCGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
*
770538 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * * *
770587 TAAG-TCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
770634 TAAAACCAATGTTGTTGGCCTTGAATCAACACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
770673 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * *
770721 TAAGTCCAATGTCGCTGGCCTTGAATCTGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * * * *
770770 TAAG-TCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * *
770817 TAAAACCAATGTTGCTGGCCTTGAATCAACACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
770856 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
770904 TAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* ** * *
770953 TAAG-TCAATGTCG-TCGGCCTTGAATCAGCGTATTGGCACC-GGCAACTTT
1 TAAGACCAATGTCGCT-GGCCTTGAATCAGCACATTGGCACCTTG--TC-TT
* ** *
771002 TAA-ACCAATGTTGCCAGCCTTGAGTCAGCACATTGGCA--TATG-C--
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TGTCTT
* * * **
771045 -----CCAATATCGCTGGCTTTGAATCGGCATGTTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
771088 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
771127 TTTTCATCTT
Statistics
Matches: 751, Mismatches: 134, Indels: 142
0.73 0.13 0.14
Matches are distributed among these distances:
38 3 0.00
39 144 0.19
40 3 0.00
41 3 0.00
42 1 0.00
45 1 0.00
46 2 0.00
47 24 0.03
48 467 0.62
49 102 0.14
50 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
Found at i:770332 original size:135 final size:137
Alignment explanation
Indices: 770171--771123 Score: 604
Period size: 135 Copynumber: 7.0 Consensus size: 137
770161 ACCTTGTCTT
* * * *
770171 TAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCACCTTCATCTTTAAG-TCAATGTCGTT
1 TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATGTCGCT
* * *
770235 GGCCTTGAATCAACATATTGGCACCTTGTCTTTAAATCCAATGTTGTTGGCCTTGAATCAGCACA
65 GGCCTTGAATCAACACATTGGCACCTTGTCTTTAAATCCAATGTCGCTGGCCTTGAATCAGCACA
770300 TT-A-GCA
130 TTGACGCA
* * * * *
770306 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTG
1 TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTG
* * * * **
770371 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT-CAATGTCG-TCGGCCTTGAATCAACGT
66 GCCTTGAATCAACACATTGGCACCTT-GTCTTTAAATCCAATGTCGCT-GGCCTTGAATCAGCAC
770434 ATTGGCACCGGCAA
129 ATT-G-A-C-GC-A
* * * *
770448 CTTTTAA-ACCAATGTTGCTAGCCTTGAGTCAGCACATTGG---C--A----TAAGCCCAATATC
1 ----TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTC
* * *
770503 GCTGGCCTCGAATCAGCATATTGGCACCTTGTCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAG
62 GCTGGCCTTGAATCAACACATTGGCACCTTGTCTTTAA-ATCCAATGTCGCTGGCCTTGAATCAG
*
770567 CACATTGGCACCTTCA
126 CACATT-G-A-C-GCA
* * * * * * * *
770583 TCTTTAAG-TCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATGTT
1 ----TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTC
* ** * *
770647 GTTGGCCTTGAATCAACACATTGGCA---------TAAGCCCAATATCGCTAGCCTTGAATCAGC
62 GCTGGCCTTGAATCAACACATTGGCACCTTGTCTTTAAATCCAATGTCGCTGGCCTTGAATCAGC
* *
770703 ATATTGGCACCTTGTCTT
127 ACATT-G-A-C--G-C-A
* * * * *
770721 TAAGTCCAATGTCGCTGGCCTTGAATCTGCACATTGGCACCTTCATCTTTAAG-TCAATGTCGTT
1 TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATGTCGCT
* * * * *
770785 GGCCTTGAATCAACATATTAGCACCTTGTCTTTAAAACCAATGTTGCTGGCCTTGAATCAACACA
65 GGCCTTGAATCAACACATTGGCACCTTGTCTTTAAATCCAATGTCGCTGGCCTTGAATCAGCACA
770850 TTG--GCA
130 TTGACGCA
* * * * *
770856 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTG
1 TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTG
* * * **
770921 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT-CAATGTCG-TCGGCCTTGAATCAGCGT
66 GCCTTGAATCAACACATTGGCACCTT-GTCTTTAAATCCAATGTCGCT-GGCCTTGAATCAGCAC
770984 ATTGGCACCGGCAA
129 ATT-G-A-C-GC-A
* * * * *
770998 CTTTTAA-ACCAATGTTGCCAGCCTTGAGTCAGCACATTGGCA---TA----T--GCCCAATATC
1 ----TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTC
* ** **
771053 GCTGGCTTTGAATCGGCATGTTGGCACCTTGTCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAG
62 GCTGGCCTTGAATCAACACATTGGCACCTTGTCTTTAA-ATCCAATGTCGCTGGCCTTGAATCAG
771117 CACATTG
126 CACATTG
771124 GCATTTTCAT
Statistics
Matches: 646, Mismatches: 113, Indels: 118
0.74 0.13 0.13
Matches are distributed among these distances:
134 22 0.03
135 332 0.51
136 154 0.24
137 4 0.01
138 3 0.00
141 4 0.01
142 4 0.01
143 1 0.00
144 59 0.09
145 57 0.09
146 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (137 bp):
TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAACACATTGGCACCTTGTCTTTAAATCCAATGTCGCTGGCCTTGAATCAGCACAT
TGACGCA
Found at i:770397 original size:183 final size:182
Alignment explanation
Indices: 770080--771175 Score: 1674
Period size: 183 Copynumber: 6.0 Consensus size: 182
770070 CCTTTCTTTA
* * * *
770080 TCTTTATAACCAATGTTGCTAGCCTTGAATTAGCACATTGGCATAAGCCCAATATCGTTGGCCTC
1 TCTTTA-AACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTT
* *
770145 GAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
65 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
770210 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
130 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* * *
770263 TCTTTAAATCCAATGTTGTTGGCCTTGAATCAGCACATTAGCATAAGCCCAATATCGCTAGCCTT
1 TCTTTAAA-CCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTT
*
770328 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
65 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * *
770393 CCTTCATCTTTAAGTCAATGTCGTCGGCCTTGAATCAACGTATTGGCACC-GG
130 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* * *
770445 CAACTTTTAAACCAATGTTGCTAGCCTTGAGTCAGCACATTGGCATAAGCCCAATATCGCTGGCC
1 --TC-TTTAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCC
*
770510 TCGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
63 TTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
770575 CACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
128 CACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* * *
770630 TCTTTAAAACCAATGTTGTTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
1 TCTTT-AAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTT
* *
770695 GAATCAGCATATTGGCACCTTGTCTTTAAGTCCAATGTCGCTGGCCTTGAATCTGCACATTGGCA
65 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
*
770760 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTG
130 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* *
770813 TCTTTAAAACCAATGTTGCTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
1 TCTTT-AAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTT
*
770878 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCA
65 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * * *
770943 CCTTCATCTTTAAGTCAATGTCGTCGGCCTTGAATCAGCGTATTGGCACC-GG
130 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* * * * * *
770995 CAACTTTTAAACCAATGTTGCCAGCCTTGAGTCAGCACATTGGCATATGCCCAATATCGCTGGCT
1 --TC-TTTAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCC
* *
771060 TTGAATCGGCATGTTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
63 TTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
** * * * * *
771125 CATTTTCATCTTTAAGTCTGATATCATTAGCCTTGAATCAGCATATTGGCA
128 CACCTTCATCTTTAAGTC-AATGTCGTTGGCCTTGAATCAACATATTGGCA
771176 TCTTTAACAT
Statistics
Matches: 841, Mismatches: 62, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
182 7 0.01
183 506 0.60
184 292 0.35
185 36 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (182 bp):
TCTTTAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTTG
AATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
CTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
Found at i:770760 original size:367 final size:366
Alignment explanation
Indices: 770082--771142 Score: 1712
Period size: 367 Copynumber: 2.9 Consensus size: 366
770072 TTTCTTTATC
* *
770082 TTTATAACCAATGTTGCTAGCCTTGAATTAGCACATTGGCATAAGCCCAATATCGTTGGCCTCGA
1 TTTA-AACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGA
* *
770147 ATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCACC
65 ATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
*
770212 TTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAATCCAAT
130 TTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAAT
*
770277 GTTGTTGGCCTTGAATCAGCACATTAGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATTG
195 GTTGTTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATTG
*
770342 GCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
260 GCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* *
770407 TCAATGTCGTCGGCCTTGAATCAACGTATTGGCACC-GGCAACT
325 TCAATGTCGTCGGCCTTGAATCAACATATTAGCACCTGG--ACT
*
770450 TTTAAACCAATGTTGCTAGCCTTGAGTCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAA
1 TTTAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAA
770515 TCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT
66 TCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT
770580 TCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATG
131 TCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATG
*
770645 TTGTTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGG
196 TTGTTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGG
* *
770710 CACCTTGTCTTTAAGTCCAATGTCGCTGGCCTTGAATCTGCACATTGGCACCTTCATCTTTAAGT
261 CACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* * *
770775 CAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCT
326 CAATGTCGTCGGCCTTGAATCAACATATTAGCACCTGGACT
* * * * *
770816 TTAAAACCAATGTTGCTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTTGAA
1 TTTAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAA
*
770881 TCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCACCT
66 TCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT
* * * * * *
770946 TCATCTTTAAGTCAATGTCGTCGGCCTTGAATCAGCGTATTGGCACC-GGCAACTTTTAAACCAA
131 TCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG--TCTTTAAAACCAA
*** * * * * * *
771010 TGTTGCCAGCCTTGAGTCAGCACATTGGCATATGCCCAATATCGCTGGCTTTGAATCGGCATGTT
194 TGTTGTTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATT
**
771075 GGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAA
259 GGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
771140 GTC
324 GTC
771143 TGATATCATT
Statistics
Matches: 647, Mismatches: 43, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
365 1 0.00
366 169 0.26
367 472 0.73
368 5 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (366 bp):
TTTAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAA
TCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT
TCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATG
TTGTTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGG
CACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
CAATGTCGTCGGCCTTGAATCAACATATTAGCACCTGGACT
Found at i:771135 original size:550 final size:551
Alignment explanation
Indices: 770080--771175 Score: 1890
Period size: 550 Copynumber: 2.0 Consensus size: 551
770070 CCTTTCTTTA
* * * * *
770080 TCTTTATAACCAATGTTGCTAGCCTTGAATTAGCACATTGGCATAAGCCCAATATCGTTGGCCTC
1 TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTC
770145 GAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
66 GAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
* *
770210 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAATCCA
131 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCTTTAAAACCA
* *
770275 ATGTTGTTGGCCTTGAATCAGCACATTAGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATAT
196 ATGTTGCTGGCCTTGAATCAACACATTAGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATAT
*
770340 TGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTA
261 TGGCACCTTGTCTTTAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTA
*
770405 AGTCAATGTCGTCGGCCTTGAATCAACGTATTGGCACCGGCAACTTTTAAACCAATGTTGCTAGC
326 AGTCAATGTCGTCGGCCTTGAATCAACGTATTGGCACCGGCAACTTTTAAACCAATGTTGCCAGC
770470 CTTGAGTCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAATCAGCATATTGGCACCTTGT
391 CTTGAGTCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAATCAGCATATTGGCACCTTGT
*
770535 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC-AATGTC
456 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATC
* *
770599 GTTGGCCTTGAATCAACATATTGGCACCTTG
521 ATTAGCCTTGAATCAACATATTGGCACCTTG
* * *
770630 TCTTTAAAACCAATGTTGTTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
1 TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTC
* *
770695 GAATCAGCATATTGGCACCTTGTCTTTAAGTCCAATGTCGCTGGCCTTGAATC-TGCACATTGGC
66 GAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAT-CACATTGGC
770759 ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCTTTAAAACC
130 ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCTTTAAAACC
*
770824 AATGTTGCTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATA
195 AATGTTGCTGGCCTTGAATCAACACATTAGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATA
*
770889 TTGGCACCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
260 TTGGCACCTTGTCTTTAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
*
770954 AAGTCAATGTCGTCGGCCTTGAATCAGCGTATTGGCACCGGCAACTTTTAAACCAATGTTGCCAG
325 AAGTCAATGTCGTCGGCCTTGAATCAACGTATTGGCACCGGCAACTTTTAAACCAATGTTGCCAG
* * * * *
771019 CCTTGAGTCAGCACATTGGCATATGCCCAATATCGCTGGCTTTGAATCGGCATGTTGGCACCTTG
390 CCTTGAGTCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAATCAGCATATTGGCACCTTG
** *
771084 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAAGTCTGATAT
455 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATAT
*
771149 CATTAGCCTTGAATCAGCATATTGGCA
520 CATTAGCCTTGAATCAACATATTGGCA
771176 TCTTTAACAT
Statistics
Matches: 513, Mismatches: 31, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
549 1 0.00
550 485 0.95
551 27 0.05
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (551 bp):
TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTC
GAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCTTTAAAACCA
ATGTTGCTGGCCTTGAATCAACACATTAGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATAT
TGGCACCTTGTCTTTAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTA
AGTCAATGTCGTCGGCCTTGAATCAACGTATTGGCACCGGCAACTTTTAAACCAATGTTGCCAGC
CTTGAGTCAGCACATTGGCATAAGCCCAATATCGCTGGCCTCGAATCAGCATATTGGCACCTTGT
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATC
ATTAGCCTTGAATCAACATATTGGCACCTTG
Found at i:772307 original size:48 final size:48
Alignment explanation
Indices: 772231--772768 Score: 395
Period size: 48 Copynumber: 11.5 Consensus size: 48
772221 CACATTGGCA
* * * *
772231 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCATGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * *
772279 TAAGACCAATGTCGCTGGTCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTT
* * *
772328 TAAGA-GAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * *
772375 TAAAACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * * *
772414 TAAGCCCAATATCGCTAGCCTTAAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * *
772462 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTT
* * * *
772511 TAAG-TCAATGTCGTTGGCCTTGAATCAGCGTATTGGCACC-GGCATCTTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTG--TC-TT
* *** *
772560 TAA-ACCAATGTTGCCAACCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * * * *
772598 TAAG-CTCAATATCGCTGGCTTTGAATCGGCATGTTGGCATCTTGTCTT
1 TAAGAC-CAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * ** *
772646 TAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCATTTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTT
* ** * *
772695 TAAGTCTGATGTCGTTGGCCTTGAATCAGCATATTGGCATCTT-TAACATTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C--TT
*
772746 CTAAGCCCAATGTCGCTGGCCTT
1 -TAAGACCAATGTCGCTGGCCTT
772769 ACCTCAACAC
Statistics
Matches: 380, Mismatches: 76, Indels: 64
0.73 0.15 0.12
Matches are distributed among these distances:
38 4 0.01
39 56 0.15
47 9 0.02
48 201 0.53
49 90 0.24
51 2 0.01
52 18 0.05
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (48 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
Found at i:772423 original size:135 final size:135
Alignment explanation
Indices: 772279--772548 Score: 355
Period size: 135 Copynumber: 2.0 Consensus size: 135
772269 ACCATGTCTT
* * * * * *
772279 TAAGACCAATGTCGCTGGTCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA-GAATGTCGTT
1 TAAGACCAATATCGCTAGCCTTAAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATGTCGCT
* * *
772343 GGCCTTGAATCAACATATTGGCACCTT-GTCTTTAAAACCAATGTTGCTGGCCTTGAATCAGCAC
65 GGCCTTGAATCAACACATTGGCACCTTCATCTTT-AAACCAATGTCGCTGGCCTTGAATCAGCAC
772407 ATTGGCA
129 ATTGGCA
* * *
772414 TAAGCCCAATATCGCTAGCCTTAAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGACCAATATCGCTAGCCTTAAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTG
** * **
772479 GCCTTGAATCAACACATTGGCACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAGCGTAT
66 GCCTTGAATCAACACATTGGCACCTTCATCTTTAAACCAATGTCGCTGGCCTTGAATCAGCACAT
772544 TGGCA
131 TGGCA
772549 CCGGCATCTT
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
134 9 0.08
135 102 0.88
136 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (135 bp):
TAAGACCAATATCGCTAGCCTTAAATCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAACACATTGGCACCTTCATCTTTAAACCAATGTCGCTGGCCTTGAATCAGCACAT
TGGCA
Found at i:772495 original size:87 final size:87
Alignment explanation
Indices: 772342--772685 Score: 370
Period size: 87 Copynumber: 3.8 Consensus size: 87
772332 AGAATGTCGT
* * *
772342 TGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAAACCAATGTTGCTGGCCTTGAATCAGCAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
*
772407 ATTGGCATAAGCCCAATATCGC
66 ATTGGCATAAGCTCAATATCGC
* * *
772429 TAGCCTTAAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAACAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
* *
772494 ATTGGCACCTTCATCTTTAAG-TCAATGTCGT
66 ATTGG------CA----TAAGCTCAATATCGC
* * * ***
772525 TGGCCTTGAATCAGCGTATTGGCACC-GGCATCTTTTAA-ACCAATGTTGCCAACCTTGAATCAG
1 TGGCCTTGAATCAGCATATTGGCACCTTG--TC-TTTAAGACCAATGTCGCTGGCCTTGAATCAG
772588 CACATTGGCATAAGCTCAATATCGC
63 CACATTGGCATAAGCTCAATATCGC
* * * * *
772613 TGGCTTTGAATCGGCATGTTGGCATCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCAC
1 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
772678 ATTGGCAT
66 ATTGGCAT
772686 TTTCATCTTT
Statistics
Matches: 210, Mismatches: 31, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
86 5 0.02
87 101 0.48
88 29 0.14
89 1 0.00
91 2 0.01
93 2 0.01
95 1 0.00
96 30 0.14
97 34 0.16
98 5 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (87 bp):
TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
ATTGGCATAAGCTCAATATCGC
Found at i:772497 original size:183 final size:183
Alignment explanation
Indices: 772187--772733 Score: 837
Period size: 183 Copynumber: 3.0 Consensus size: 183
772177 ACCTTTCTTT
*
772187 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCT
1 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* *
772252 TGAATCAGCATATTGGCACCATGTCTTTAAGACCAATGTCGCTGGTCTTGAATCAGCACATTGGC
66 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * *
772317 ACCTTCATCTTTAAGAGAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
131 ACCTTCATCTTTAAGTGAATGTCGTTGGCCTTGAATCAGCATATTGGCACC-GG
* *
772371 -TCTTTAAAACCAATGTTGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCT
1 ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* *
772435 TAAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGC
66 TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* *
772500 ACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAGCGTATTGGCACCGG
131 ACCTTCATCTTTAAGTGAATGTCGTTGGCCTTGAATCAGCATATTGGCACCGG
* * * * *
772553 CATCTTTTAAACCAATGTTGCCAACCTTGAATCAGCACATTGGCATAAGCTCAATATCGCTGGCT
1 -ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCC
* * * *
772618 TTGAATCGGCATGTTGGCATCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGG
65 TTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
**
772683 CATTTTCATCTTTAAGTCTG-ATGTCGTTGGCCTTGAATCAGCATATTGGCA
130 CACCTTCATCTTTAAG--TGAATGTCGTTGGCCTTGAATCAGCATATTGGCA
772734 TCTTTAACAT
Statistics
Matches: 330, Mismatches: 29, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
182 1 0.00
183 169 0.51
184 129 0.39
185 30 0.09
186 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (183 bp):
ATCTTTAAAACCAATGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
TGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
ACCTTCATCTTTAAGTGAATGTCGTTGGCCTTGAATCAGCATATTGGCACCGG
Found at i:772714 original size:49 final size:49
Alignment explanation
Indices: 772609--772829 Score: 173
Period size: 48 Copynumber: 4.5 Consensus size: 49
772599 AAGCTCAATA
* * ** * * * *
772609 TCGCTGGCTTTGAATCGGCATGTTGGCATCTT-GTCTTTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAAGTCTAATG
* *
772657 TCACTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAAGTCTGATG
1 TCGCTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAAGTCTAATG
* * * *
772706 TCGTTGGCCTTGAATCAGCATATTGGCATCTTTAACAT-TTCTAAGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCAT-TTT--CATCTT-TAAGTCTAATG
* * * *
772758 TCGCTGGCCTT-ACCTCAACACGTTGGCATTTTC--CTTCAAGTCTAAATG
1 TCGCTGGCCTTGA-ATCAGCACATTGGCATTTTCATCTTTAAGTCT-AATG
* *
772806 TCGCTGGGCATGAATCAGCACATT
1 TCGCTGGCCTTGAATCAGCACATT
772830 ATCATTCTTT
Statistics
Matches: 135, Mismatches: 29, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
47 4 0.03
48 49 0.36
49 40 0.30
50 3 0.02
51 6 0.04
52 33 0.24
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (49 bp):
TCGCTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAAGTCTAATG
Found at i:772839 original size:101 final size:100
Alignment explanation
Indices: 772646--772839 Score: 221
Period size: 101 Copynumber: 1.9 Consensus size: 100
772636 ATCTTGTCTT
* * * *
772646 TAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCATTTTCATCTTTAAGTCTGATGTCGTT
1 TAAGACCAATGTCACTGGCCTTGAATCAACACATTGGCATTTTCA-CTTCAAGTCTAATGTCGCT
* * *
772711 GGCCTTGAATCAGCATATTGGCATCTTTAACATTTC
65 GGCCATGAATCAGCACATTAGCATCTTTAACATTTC
* * * *
772747 TAAGCCCAATGTCGCTGGCCTT-ACCTCAACACGTTGGCATTTTC-CTTCAAGTCTAAATGTCGC
1 TAAGACCAATGTCACTGGCCTTGA-ATCAACACATTGGCATTTTCACTTCAAGTCT-AATGTCGC
* *
772810 TGGGCATGAATCAGCACATTATCATTCTTT
64 TGGCCATGAATCAGCACATTAGCA-TCTTT
772840 GCATCTTCGA
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
99 9 0.12
100 26 0.34
101 42 0.55
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (100 bp):
TAAGACCAATGTCACTGGCCTTGAATCAACACATTGGCATTTTCACTTCAAGTCTAATGTCGCTG
GCCATGAATCAGCACATTAGCATCTTTAACATTTC
Found at i:773881 original size:48 final size:48
Alignment explanation
Indices: 773794--774429 Score: 463
Period size: 48 Copynumber: 13.8 Consensus size: 48
773784 CACATTGGCA
* * * * *
773794 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATGGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
773842 TAAGACCAATGTTGCTGGCCTTGAATCACCACATTGGCACCTTCATCAT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * * *
773891 TAAG-TCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * * *
773938 TAAAAGCAATGTTGCTGGCCTTGAATCA--ACA---G-A--TTGGC-A
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
773977 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * *
774025 TAAGTCCAATGTCGTTGGCCTTGAATCTGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* * * * *
774074 TAAG-TCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * *
774121 TAAAACCAATGTTGCTGGCCTTGAATCAACACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * * *
774160 TAAGCCCAATATCGATAGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
774208 TAAGACCAGTGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
* ** **
774257 TAAG-TCAATGTCATTGGCCTTGAATCAGCGTATTGGCA-C-TGACATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTG---TCTT
* * * **
774305 TAAAATCAATGTTGCCAGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* * * * **
774344 TAAGCCCAATATCGCTGGCTTTGAATCGGCATGTTGGCACCTTGTCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
* *
774392 TACGACCAATGTCGCTTGCCTTGAATCAGCACATTGGC
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
774430 GTTTTCATCT
Statistics
Matches: 452, Mismatches: 100, Indels: 72
0.72 0.16 0.12
Matches are distributed among these distances:
39 81 0.18
40 4 0.01
41 2 0.00
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
46 3 0.01
47 18 0.04
48 290 0.64
49 50 0.11
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (48 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTT
Found at i:774019 original size:135 final size:135
Alignment explanation
Indices: 773859--774103 Score: 352
Period size: 135 Copynumber: 1.8 Consensus size: 135
773849 AATGTTGCTG
*
773859 GCCTTGAATCACCACATTGGCACCTTCATCATTAAGT-CAATGTCGTTGGCCTTGAATCAACATA
1 GCCTTGAATCACCACATTGGCACCTT-ATCATTAAGTCCAATGTCGTTGGCCTTGAATCAACACA
* *
773923 TTGGCACCTT-GTCTTTAAAAG-CAATGTTGCTGGCCTTGAATCAACAGATTGGCATAAGCCCAA
65 TTGGCACCTTCATCTTT--AAGTCAATGTCGCTGGCCTTGAATCAACAGATTGGCATAAGCCCAA
773986 TATCGCTA
128 TATCGCTA
* * * * **
773994 GCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGTCCAATGTCGTTGGCCTTGAATCTGCACAT
1 GCCTTGAATCACCACATTGGCACCTTATCATTAAGTCCAATGTCGTTGGCCTTGAATCAACACAT
*
774059 TGGCACCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACA
66 TGGCACCTTCATCTTTAAGTCAATGTCGCTGGCCTTGAATCAACA
774104 TATTAGCACC
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
134 11 0.11
135 81 0.84
136 5 0.05
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (135 bp):
GCCTTGAATCACCACATTGGCACCTTATCATTAAGTCCAATGTCGTTGGCCTTGAATCAACACAT
TGGCACCTTCATCTTTAAGTCAATGTCGCTGGCCTTGAATCAACAGATTGGCATAAGCCCAATAT
CGCTA
Found at i:774060 original size:183 final size:183
Alignment explanation
Indices: 773751--774475 Score: 1094
Period size: 183 Copynumber: 4.0 Consensus size: 183
773741 CCTTTCTTTA
* *
773751 TCTTTAAAACCAACGTTGCTAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTAGCCTT
1 TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
* * *
773816 GAATCAGCATATGGGCACCTTGTCTTTAAGACCAATGTTGCTGGCCTTGAATCACCACATTGGCA
66 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
*
773881 CCTTCATCATTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
131 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* * *
773934 TCTTTAAAAGCAATGTTGCTGGCCTTGAATCAACAGATTGGCATAAGCCCAATATCGCTAGCCTT
1 TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
* * *
773999 GAATCAGCATATTGGCACCTTGTCTTTAAGTCCAATGTCGTTGGCCTTGAATCTGCACATTGGCA
66 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
*
774064 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTAGCACCTTG
131 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* *
774117 TCTTTAAAACCAATGTTGCTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGATAGCCTT
1 TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
*
774182 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAGTGTCGCTGGCCTTGAATCAGCACATTGGCA
66 GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* * *
774247 CCTTCATCTTTAAGTCAATGTCATTGGCCTTGAATCAGCGTATTGGCA-C-TG
131 CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
* * * *
774298 ACATCTTTAAAATCAATGTTGCCAGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGC
1 ---TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGC
* * * * *
774363 TTTGAATCGGCATGTTGGCACCTTGTCTTTACGACCAATGTCGCTTGCCTTGAATCAGCACATTG
63 CTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
*** * * *
774428 GCGTTTTCATCTTTAAGTCTGATATCGTTGGCCTTGAATCAGCATATT
128 GCACCTTCATCTTTAAGTC-AATGTCGTTGGCCTTGAATCAACATATT
774476 TGCATCTTTA
Statistics
Matches: 495, Mismatches: 43, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
181 2 0.00
182 1 0.00
183 337 0.68
184 131 0.26
185 24 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (183 bp):
TCTTTAAAACCAATGTTGCTAGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTAGCCTT
GAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
CCTTCATCTTTAAGTCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTG
Found at i:775338 original size:13 final size:13
Alignment explanation
Indices: 775320--775365 Score: 76
Period size: 13 Copynumber: 3.5 Consensus size: 13
775310 ACATAAGTGT
775320 TGTATCGATACAA
1 TGTATCGATACAA
775333 TGTATCGATAC-A
1 TGTATCGATACAA
775345 TAGTATCGATACAA
1 T-GTATCGATACAA
775359 TGTATCG
1 TGTATCG
775366 CTATGAAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 2 0.06
13 27 0.87
14 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:775428 original size:13 final size:13
Alignment explanation
Indices: 775410--775437 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
775400 ATTACTCAAA
775410 TGTATCGATACAT
1 TGTATCGATACAT
775423 TGTATCGATACAT
1 TGTATCGATACAT
775436 TG
1 TG
775438 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:781658 original size:79 final size:79
Alignment explanation
Indices: 781407--781679 Score: 251
Period size: 79 Copynumber: 3.5 Consensus size: 79
781397 CTCATGATGG
* * * * *
781407 AAATTTAATATTTTGGGAGTAAAAATGAGGTTGGAGTATCCCATCAGAAATTATGGGG-TGGAGT
1 AAATTTAATATTTTAGAAATAAAAATGAGGTTGGAGTATCCCATCAAAAATAATGGGGTTGGAGT
* *
781471 AT-ACCCGATGGTGAA
66 ATCA-CTGA-GATGAA
** * *
781486 AAA-TCGATATTTT-GAAAATAAAAACGAGGTTGGAGTATCCCCTCAAAAATAA-----TTGGAG
1 AAATTTAATATTTTAG-AAATAAAAATGAGGTTGGAGTATCCCATCAAAAATAATGGGGTTGGAG
* * *
781544 TATCCCTAAAATGAA
65 TATCACTGAGATGAA
* * * * *
781559 AAATTTAATATTTCAAAAATAAAAATGGGGTTGGAGTATCTCGTCAAAAATAATGGGGTTGGAGT
1 AAATTTAATATTTTAGAAATAAAAATGAGGTTGGAGTATCCCATCAAAAATAATGGGGTTGGAGT
*
781624 ATCATTGAGATGAA
66 ATCACTGAGATGAA
*
781638 AAATTTAATATTTTAGAAATAAAAAT-AGCGTTGGATTATCCC
1 AAATTTAATATTTTAGAAATAAAAATGAG-GTTGGAGTATCCC
781680 CTCTTAATGA
Statistics
Matches: 153, Mismatches: 30, Indels: 22
0.75 0.15 0.11
Matches are distributed among these distances:
73 7 0.05
74 50 0.33
77 1 0.01
78 40 0.26
79 55 0.36
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.30
Consensus pattern (79 bp):
AAATTTAATATTTTAGAAATAAAAATGAGGTTGGAGTATCCCATCAAAAATAATGGGGTTGGAGT
ATCACTGAGATGAA
Found at i:784811 original size:20 final size:21
Alignment explanation
Indices: 784788--784838 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
784778 TTCAGACATT
*
784788 TATCGATATATTCACT-TATG
1 TATCGATACATTCACTGTATG
*
784808 TATCGATACATTCACTGTTTG
1 TATCGATACATTCACTGTATG
784829 TATCGATACA
1 TATCGATACA
784839 AATTATAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
TATCGATACATTCACTGTATG
Found at i:784832 original size:21 final size:20
Alignment explanation
Indices: 784765--784838 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
784755 GACATGATCC
***
784765 TGTATCGATACATTTCAGACA
1 TGTATCGATACA-TTCACTTA
* *
784786 TTTATCGATATATTCACTTA
1 TGTATCGATACATTCACTTA
*
784806 TGTATCGATACATTCACTGTT
1 TGTATCGATACATTCACT-TA
784827 TGTATCGATACA
1 TGTATCGATACA
784839 AATTATAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 21 0.48
21 23 0.52
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:786982 original size:100 final size:96
Alignment explanation
Indices: 786878--787068 Score: 224
Period size: 100 Copynumber: 1.9 Consensus size: 96
786868 TGTCCTCGGC
* * * *
786878 GATGACAATCTT-GGCGAAAATAACATTTAAATCTTGATAGGTTTAAAAAAATAGGGTTGGAGTA
1 GATGACAAT-TTCGACGAAAATAACATTTAAATCTTGACAAGTTT--AAAAATAGGGTTGCAGT-
*
786942 TCTCC-TCAAAAGAATGAGGGTTGGAGTATCCCTAAA
62 TCCCCTTCAAAA-AATG-GGGTTGGAGTATCCCTAAA
* * * *
786978 GATGATAATTTCGATGAAAATAAGATTTGAATCTTGACAAGTTTAAAAATAGGGTTGCAGTTCCC
1 GATGACAATTTCGACGAAAATAACATTTAAATCTTGACAAGTTTAAAAATAGGGTTGCAGTTCCC
*
787043 CTTGAAAAAATGGGGTTGGAGTATCC
66 CTTCAAAAAATGGGGTTGGAGTATCC
787069 TTGATAGAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
96 14 0.18
97 8 0.10
98 21 0.27
99 2 0.03
100 34 0.43
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29
Consensus pattern (96 bp):
GATGACAATTTCGACGAAAATAACATTTAAATCTTGACAAGTTTAAAAATAGGGTTGCAGTTCCC
CTTCAAAAAATGGGGTTGGAGTATCCCTAAA
Found at i:788567 original size:21 final size:20
Alignment explanation
Indices: 788541--788591 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
788531 CTATAATTTT
*
788541 TATCGATGCAAAAAGTGAATG
1 TATCGATAC-AAAAGTGAATG
*
788562 TATCGATACATAAGTGAATG
1 TATCGATACAAAAGTGAATG
788582 TATCGATACA
1 TATCGATACA
788592 TGTTTGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 20 0.71
21 8 0.29
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
TATCGATACAAAAGTGAATG
Found at i:788604 original size:21 final size:20
Alignment explanation
Indices: 788553--788612 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
788543 TCGATGCAAA
788553 AAGTGAATGTATCGATACAT
1 AAGTGAATGTATCGATACAT
788573 AAGTGAATGTATCGATACAT
1 AAGTGAATGTATCGATACAT
***
788593 GTTTGAAATGTATCGATACA
1 AAGTG-AATGTATCGATACA
788613 AGACCATGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
20 22 0.61
21 14 0.39
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
AAGTGAATGTATCGATACAT
Found at i:788762 original size:50 final size:50
Alignment explanation
Indices: 788649--788784 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 50
788639 TCTGGAAAGA
* * *
788649 AAATGTATCAATACATTTTTTATTGTATCGATACATTCTGGGATTGATCC
1 AAATGTATCGATACATTTTTCATTGTATCGATACATTCTGGGATTGACCC
* * **
788699 AAATTGTATCGATACATTTTTCATTATATCGATACATTTTGGTTTTGACCC
1 AAA-TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGATTGACCC
* *
788750 AAATGTATCGATACATTCTTCAATGTATC-ATACAT
1 AAATGTATCGATACATTTTTCATTGTATCGATACAT
788785 CCAGTTAGAT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
49 6 0.08
50 26 0.35
51 43 0.57
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (50 bp):
AAATGTATCGATACATTTTTCATTGTATCGATACATTCTGGGATTGACCC
Found at i:801693 original size:28 final size:28
Alignment explanation
Indices: 801652--801723 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
801642 AAAAAAATCA
* *
801652 AAAATCAAATAAAAAAAGTTAAAAAGTAAAA-
1 AAAA-CAAA-AAAAAAGGTGAAAAA--AAAAG
801683 AAAACAAAAAAAAAGGTGAAAAAAAAAG
1 AAAACAAAAAAAAAGGTGAAAAAAAAAG
*
801711 AAAAGAAAAAAAA
1 AAAACAAAAAAAA
801724 CACAAAAACA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.11
28 12 0.32
29 13 0.35
30 4 0.11
31 4 0.11
ACGTcount: A:0.79, C:0.03, G:0.10, T:0.08
Consensus pattern (28 bp):
AAAACAAAAAAAAAGGTGAAAAAAAAAG
Found at i:801694 original size:29 final size:27
Alignment explanation
Indices: 801642--801723 Score: 74
Period size: 30 Copynumber: 2.8 Consensus size: 27
801632 TCCCAATTCC
* *
801642 AAAAAAATCAAAAATCAAATAAAAAAAGTT
1 AAAAAAA--AAAAAACAAA-AAAAAAAGTG
*
801672 AAAAAGTAAAAAAAACAAAAAAAAAGGTG
1 AAAAA--AAAAAAAACAAAAAAAAAAGTG
*
801701 AAAAAAAAAGAAAAGAAAAAAAA
1 AAAAAAAAA-AAAACAAAAAAAA
801724 CACAAAAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
27 4 0.09
28 12 0.27
29 13 0.29
30 14 0.31
32 2 0.04
ACGTcount: A:0.79, C:0.04, G:0.09, T:0.09
Consensus pattern (27 bp):
AAAAAAAAAAAAACAAAAAAAAAAGTG
Found at i:802631 original size:13 final size:13
Alignment explanation
Indices: 802613--802638 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
802603 CAATTTTTTG
802613 TGTATCGATACAT
1 TGTATCGATACAT
802626 TGTATCGATACAT
1 TGTATCGATACAT
802639 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:802703 original size:21 final size:21
Alignment explanation
Indices: 802677--802751 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
802667 CTGCCAAGAA
*
802677 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
* *
802698 ATGTATCGATACA--TGTTGC
1 ATGTATCGATACATCTTTTTC
802717 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
802738 ATGTATCGATACAT
1 ATGTATCGATACAT
802752 TGCAACATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 16 0.34
21 31 0.66
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:802732 original size:40 final size:41
Alignment explanation
Indices: 802677--802769 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 41
802667 CTGCCAAGAA
* ***
802677 ATGTATCGATACATCTTTTTTATGTATCGATACA-TGTTGC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
802717 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
802758 ATGTATCGATAC
1 ATGTATCGATAC
802770 TTTGAATTGT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
40 33 0.69
41 15 0.31
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:803380 original size:48 final size:48
Alignment explanation
Indices: 803325--803420 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
803315 AAATTTTACA
803325 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
803373 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
803421 TTATCTCCCC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (48 bp):
AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
Found at i:805279 original size:13 final size:13
Alignment explanation
Indices: 805261--805299 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
805251 ATAATCACCC
*
805261 TGTATCGATACAG
1 TGTATCGATACAA
805274 TGTATCGATACAA
1 TGTATCGATACAA
805287 TGTATCGATACAA
1 TGTATCGATACAA
805300 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:805310 original size:20 final size:20
Alignment explanation
Indices: 805285--805363 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
805275 GTATCGATAC
805285 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
805305 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
805330 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
805350 CATGTATCGATACA
1 AATGTATCGATACA
805364 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:807398 original size:15 final size:15
Alignment explanation
Indices: 807378--807408 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
807368 ATTTCGTTTG
*
807378 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
807393 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
807408 G
1 G
807409 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:809246 original size:21 final size:21
Alignment explanation
Indices: 809210--809255 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
809200 GCAAGTTTTC
*
809210 ATTTTCTTAGCTAAC-TCATT
1 ATTTTCTTAGCCAACTTCATT
*
809230 ATTTTCATTAGCCAACTTCTTT
1 ATTTTC-TTAGCCAACTTCATT
809252 ATTT
1 ATTT
809256 CAACTTGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 8 0.36
22 8 0.36
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.52
Consensus pattern (21 bp):
ATTTTCTTAGCCAACTTCATT
Found at i:811422 original size:20 final size:20
Alignment explanation
Indices: 811380--811418 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
811370 CGTGTAAATG
* *
811380 TATCGATACAATTTTTGATA
1 TATCGATACAATATTTGAAA
811400 TATCGATAC-ATATTTGAAA
1 TATCGATACAATATTTGAAA
811419 ATATAGCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
TATCGATACAATATTTGAAA
Found at i:811487 original size:13 final size:13
Alignment explanation
Indices: 811469--811494 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
811459 CAATTTTTTG
811469 TGTATCGATACAT
1 TGTATCGATACAT
811482 TGTATCGATACAT
1 TGTATCGATACAT
811495 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:811559 original size:21 final size:21
Alignment explanation
Indices: 811533--811607 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
811523 CTGCCAAGAA
*
811533 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
* *
811554 ATGTATCGATACA--TGTTGC
1 ATGTATCGATACATCTTTTTC
811573 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
811594 ATGTATCGATACAT
1 ATGTATCGATACAT
811608 TGCAACATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 16 0.34
21 31 0.66
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:811588 original size:40 final size:41
Alignment explanation
Indices: 811533--811625 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 41
811523 CTGCCAAGAA
* ***
811533 ATGTATCGATACATCTTTTTTATGTATCGATACA-TGTTGC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
811573 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
811614 ATGTATCGATAC
1 ATGTATCGATAC
811626 TTTGAATTGT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
40 33 0.69
41 15 0.31
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:812933 original size:13 final size:13
Alignment explanation
Indices: 812915--812949 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
812905 TTTCACCATG
812915 TATCGATACAATA
1 TATCGATACAATA
*
812928 TATCGATACACTA
1 TATCGATACAATA
*
812941 TATCAATAC
1 TATCGATAC
812950 TGAGTTAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:813034 original size:13 final size:13
Alignment explanation
Indices: 813016--813040 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
813006 TAACAAGAAC
813016 ATGTATCGATACA
1 ATGTATCGATACA
813029 ATGTATCGATAC
1 ATGTATCGATAC
813041 TAAGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:813157 original size:20 final size:21
Alignment explanation
Indices: 813132--813172 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
813122 GATACTTTGG
813132 ATTATTTTTA-CTTGAAAAAA
1 ATTATTTTTAGCTTGAAAAAA
813152 ATTATTTTTATGCTTGAAAAA
1 ATTATTTTTA-GCTTGAAAAA
813173 TATCTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
22 9 0.47
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAA
Found at i:816189 original size:13 final size:13
Alignment explanation
Indices: 816171--816196 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
816161 CAATTTTTTG
816171 TGTATCGATACAT
1 TGTATCGATACAT
816184 TGTATCGATACAT
1 TGTATCGATACAT
816197 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:822692 original size:21 final size:21
Alignment explanation
Indices: 822663--822707 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
822653 AAGTTTTCAT
*
822663 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
822683 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
822705 TTT
1 TTT
822708 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:824944 original size:13 final size:13
Alignment explanation
Indices: 824926--824951 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
824916 CAATTTTTTG
824926 TGTATCGATACAT
1 TGTATCGATACAT
824939 TGTATCGATACAT
1 TGTATCGATACAT
824952 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:827275 original size:21 final size:21
Alignment explanation
Indices: 827234--827294 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
827224 TTTTTATTAG
*
827234 CCAACTCATT-ATTCTCATTTT
1 CCAACTCATTCATTTTC-TTTT
*
827255 GCAACTCATTTC-TTTTCTTTT
1 CCAACTCA-TTCATTTTCTTTT
827276 CCAACTCATTCATTTTCTT
1 CCAACTCATTCATTTTCTT
827295 CTCTAGTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 3 0.09
21 25 0.74
22 6 0.18
ACGTcount: A:0.20, C:0.28, G:0.02, T:0.51
Consensus pattern (21 bp):
CCAACTCATTCATTTTCTTTT
Found at i:828986 original size:32 final size:33
Alignment explanation
Indices: 828914--828994 Score: 103
Period size: 32 Copynumber: 2.4 Consensus size: 33
828904 TTTCATAGGT
828914 TAAGATAGAACCTTTCTCCCTATCTTTTACAAAGGC
1 TAAGATAGAACCTTTCT-CCTATCTTTT--AAAGGC
828950 TAAGATAGAACCTTATCT-CTATCTTTT-AAGGC
1 TAAGATAGAACCTT-TCTCCTATCTTTTAAAGGC
*
828982 TAAGACAGAACCT
1 TAAGATAGAACCT
828995 CTCAATTACT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
32 17 0.40
35 9 0.21
36 14 0.33
37 3 0.07
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.32
Consensus pattern (33 bp):
TAAGATAGAACCTTTCTCCTATCTTTTAAAGGC
Found at i:829353 original size:23 final size:23
Alignment explanation
Indices: 829327--829376 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
829317 GACATATTTG
829327 ACTTGTTGGGACCTTGTTTTCGT
1 ACTTGTTGGGACCTTGTTTTCGT
829350 ACTTGTTGGGACCTTGTTTTCGT
1 ACTTGTTGGGACCTTGTTTTCGT
829373 ACTT
1 ACTT
829377 ACATATTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.10, C:0.18, G:0.24, T:0.48
Consensus pattern (23 bp):
ACTTGTTGGGACCTTGTTTTCGT
Found at i:829590 original size:33 final size:32
Alignment explanation
Indices: 829530--829593 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
829520 CAATTCACTG
829530 TGTATCGATACCAAGAACATGTATCGATACAA
1 TGTATCGATACCAAGAACATGTATCGATACAA
* * *
829562 TGTATTGATACTAAGCAATATGTATCGATACA
1 TGTATCGATACCAAG-AACATGTATCGATACA
829594 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACCAAGAACATGTATCGATACAA
Found at i:829692 original size:20 final size:21
Alignment explanation
Indices: 829669--829712 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
829659 TATACTTTAG
829669 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTACCTTGAAAAAC
829689 ATTATTTTTACCCTTGAAAAAC
1 ATTATTTTTA-CCTTGAAAAAC
829711 AT
1 AT
829713 CTATACTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.43
Consensus pattern (21 bp):
ATTATTTTTACCTTGAAAAAC
Found at i:830629 original size:33 final size:32
Alignment explanation
Indices: 830584--830647 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
830574 GTTACAAGCC
*
830584 AATGTATCGATACAT-TTGGTCATATATCGATAT
1 AATGTATAGATACATCTT-GT-ATATATCGATAT
*
830617 AATGTATAGATACATCTTGTATGTATCGATA
1 AATGTATAGATACATCTTGTATATATCGATA
830648 CAAACAGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 16 0.57
34 2 0.07
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (32 bp):
AATGTATAGATACATCTTGTATATATCGATAT
Found at i:833244 original size:13 final size:13
Alignment explanation
Indices: 833226--833288 Score: 108
Period size: 13 Copynumber: 4.8 Consensus size: 13
833216 TAAACCCTTG
*
833226 GTATCGATACACT
1 GTATCGATACAAT
833239 GTATCGATACAAT
1 GTATCGATACAAT
*
833252 GTATCGATACACT
1 GTATCGATACAAT
833265 GTATCGATACAAT
1 GTATCGATACAAT
833278 GTATCGATACA
1 GTATCGATACA
833289 GAGAATGCTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:833255 original size:26 final size:26
Alignment explanation
Indices: 833226--833288 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
833216 TAAACCCTTG
833226 GTATCGATACACTGTATCGATACAAT
1 GTATCGATACACTGTATCGATACAAT
833252 GTATCGATACACTGTATCGATACAAT
1 GTATCGATACACTGTATCGATACAAT
833278 GTATCGATACA
1 GTATCGATACA
833289 GAGAATGCTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (26 bp):
GTATCGATACACTGTATCGATACAAT
Found at i:840446 original size:14 final size:13
Alignment explanation
Indices: 840425--840458 Score: 59
Period size: 14 Copynumber: 2.5 Consensus size: 13
840415 AGTATTAGAC
840425 TTCACATCATGCA
1 TTCACATCATGCA
840438 TTCCACATCATGCA
1 TT-CACATCATGCA
840452 TTCACAT
1 TTCACAT
840459 TACCATCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.32
Consensus pattern (13 bp):
TTCACATCATGCA
Found at i:841157 original size:32 final size:31
Alignment explanation
Indices: 841116--841237 Score: 117
Period size: 31 Copynumber: 3.9 Consensus size: 31
841106 GTGGCAATCC
* *
841116 CTTTTCTTAAGCCCACACGAGTTGGTGGCAA
1 CTTTTCTAAAGCCCACACAAGTTGGTGGCAA
*
841147 CTTCTTCTTAAA-CCCACACGAA-TTGGTGGCAT
1 CTT-TTC-TAAAGCCCACAC-AAGTTGGTGGCAA
* * *
841179 CTTTT-TCAAAGCTCACACAAGTTAGTGGAAA
1 CTTTTCT-AAAGCCCACACAAGTTGGTGGCAA
841210 CCTTTT-TAAAGCCCACACAAGTTGGTGG
1 -CTTTTCTAAAGCCCACACAAGTTGGTGG
841238 AAACCCTGTC
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
29 1 0.01
30 5 0.07
31 37 0.49
32 28 0.37
33 4 0.05
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (31 bp):
CTTTTCTAAAGCCCACACAAGTTGGTGGCAA
Found at i:841354 original size:52 final size:52
Alignment explanation
Indices: 841287--842297 Score: 568
Period size: 52 Copynumber: 19.4 Consensus size: 52
841277 TTATAAGCCT
* *
841287 AATGTTGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTAAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * *
841339 AATATCGCTAGCCTTGAATCAGCATATTGGCAGCCC-TACCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCCTTATCATCTTTAAGTCC
* * * * * * * *
841391 AATGTCACTAGCCCTAAATTAACGCATTGGCACTC-T-TCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * * *
841441 AATGTCGTTGGCTTTGAATCAGTATATTAGCACCCTTATCATCTTAAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * * *
841493 AATATTGCTGGCCTTAAATCAACATATTGGCA-CC-TACCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * *
841543 AATGTCGTTGGCCTTGAATCAACGCATTGGCACTC-T-TCATCTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * * * * *
841593 AATAGT-GTTGGCTTTGACTCAACATATTCGCTCCCTTATCATCTTAAAGTCC
1 AAT-GTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * * * *
841645 AATATCGCTGGCCTTGAATCAGCATATTGGCACCCCTACCAGCTTTATGTCT
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
** * * *
841697 AATGTTACTGGCCTTGAATCATCACATTAGCA--CTTGTCAAAACCTTCTTTCTGAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATC---A---TC-TT-T-AAGTCC
* * * * * ** * * *
841756 ATTATCGCTAGCCTTGAAT-AACATATTGGCACTTTTGTTAACTTTAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * * *
841807 AATGTTGCTGGCCTAGAATTAGCACATTGGCATCTTTGTCATCTTTAAG-CTC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTC-C
* * * ** * * *
841859 TATGTCACTGG-CTCTGAATTATTACATTGGCAACC-T-TCATCTTTAAATACA
1 AATGTCGCTGGCCT-TGAATCAGCACATTGGCACCCTTATCATCTTTAAGT-CC
* * * * * * * * *
841910 AATATCGCTAGTCTTGAATCAACATATTGGCACCTTTCTCAACTTTGAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * * * * * * *
841962 AATGTCGCTAGTCTTGAATCAACATATTAGTA-CATCTACCATCTTCAAGTCT
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCT-TATCATCTTTAAGTCC
* * * ** * *
842014 AATGTCGTTGGCCTTGAATCAACACATTGACACTCGTCAAAACCTTCTTTCCAAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC-C--C-TTATCATCTTT---AAGTCC
** * * *
842073 AATGTCATTGGCCTTGAATTAGCACATTGGCACCCTCATCATCTTCAAGTCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * *
842125 AATGTCACTGG-CTTGGAATCAGCACGTTGGCACCTTTGTTATCTTTAAG-CC
1 AATGTCGCTGGCCTT-GAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * *
842176 TAGTGTCGCTGGCCGTGAATCAGCACATTGGCA-ACTT-TCATCTTTAAGTTC
1 -AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* * * * *
842227 AATGTCACTAGCCTTGAATCAGCACATTGGCACCTTTATCATCATTAAGTCT
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
* **
842279 AATGTAGCAAGCCTTGAAT
1 AATGTCGCTGGCCTTGAAT
842298 ATGCAAATTA
Statistics
Matches: 730, Mismatches: 187, Indels: 84
0.73 0.19 0.08
Matches are distributed among these distances:
50 164 0.22
51 70 0.10
52 392 0.54
53 17 0.02
54 2 0.00
55 6 0.01
56 9 0.01
57 3 0.00
58 11 0.02
59 52 0.07
60 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (52 bp):
AATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTCC
Found at i:841468 original size:102 final size:102
Alignment explanation
Indices: 841303--841685 Score: 308
Period size: 102 Copynumber: 3.7 Consensus size: 102
841293 GCTGGCCTTG
* * * * * *
841303 AATCAGCACATTGGCACCCTTATCATCTTAAAGTCCAATATCGCTAGCCTTGAATCAGCATATTG
1 AATCAACACATTGGCA-CC-TATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTA
* *
841368 GCAGCCC-TACCATCTTTAAGTCCAATGTCACTAGCCCTA
64 GCA-CCCTTACCATCTTAAAGTCCAATATCACTAGCCCTA
* * * *
841407 AATTAACGCATTGGCACTCT-TCATCTTTAAGTCCAATGTCGTTGGCTTTGAATCAGTATATTAG
1 AATCAACACATTGGCAC-CTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTAG
* ** * *
841471 CACCCTTATCATCTTAAAGTCCAATATTGCTGGCCTTA
65 CACCCTTACCATCTTAAAGTCCAATATCACTAGCCCTA
* * * ** *
841509 AATCAACATATTGGCACCTACCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAACGCATTGGC
1 AATCAACACATTGGCACCTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTAGC
* * ** * ** *
841574 ACTCTT--CATCTTTAAGTCCAATAGT-GTTGGCTTTG
66 ACCCTTACCATCTTAAAGTCCAATA-TCACTAGCCCTA
* * * * * * * *
841609 ACTCAACATATTCGCTCCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
1 AATCAACACATTGGC-ACC-TATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTA
*
841674 GCACCCCTACCA
64 GCACCCTTACCA
841686 GCTTTATGTC
Statistics
Matches: 227, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
100 36 0.16
101 8 0.04
102 165 0.73
103 2 0.01
104 16 0.07
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (102 bp):
AATCAACACATTGGCACCTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTAGC
ACCCTTACCATCTTAAAGTCCAATATCACTAGCCCTA
Found at i:841603 original size:152 final size:153
Alignment explanation
Indices: 841295--842274 Score: 623
Period size: 154 Copynumber: 6.3 Consensus size: 153
841285 CTAATGTTGC
* * * *
841295 TGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTAAAGTCCAATATCGCTAGCCTTGAATCA
1 TGGCTTTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCA
* * * *
841360 GCATATTGGCAGCCCTACCATCTTTAAGTCCAATGTCACTAGCCCTAAATTAACGCATTGGCACT
66 GCATATTGGCA-CCCTACCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACGCATTGGCACT
841425 CTTCATCTTTAAGTCCAATGTCGT
130 CTTCATCTTTAAGTCCAATGTCGT
* * *
841449 TGGCTTTGAATCAGTATATTAGCACCCTTATCATCTTAAAGTCCAATATTGCTGGCCTTAAATCA
1 TGGCTTTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCA
* **
841514 ACATATTGGCA-CCTACCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAACGCATTGGCACTC
66 GCATATTGGCACCCTACCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACGCATTGGCACTC
841578 TTCATCTTTAAGTCCAATAGT-GT
131 TTCATCTTTAAGTCCAAT-GTCGT
* * * *
841601 TGGCTTTGACTCAACATATTCGCTCCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCA
1 TGGCTTTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCA
* * * * * * *
841666 GCATATTGGCACCCCTACCAGCTTTATGTCTAATGTTACTGGCCTTGAATCATCACATTAGCACT
66 GCATATTGGCA-CCCTACCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACGCATTGGCACT
* * *
841731 -TGTCAAAACCTTCTTTCTGAAGTCCATTATCGC
130 CT-TC---A---TC-TT-T-AAGTCCAATGTCGT
* * * * ** * * * * * * * *
841764 TAGCCTTGAAT-AACATATTGGCACTTTTGTTAACTTTAAGTCCAATGTTGCTGGCCTAGAATTA
1 TGGCTTTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCA
* ** ** * * ***
841828 GCACATTGGCATCTTTGTCATCTTTAAG-CTCTATGTCACTGG-CTCTGAATTATTACATTGGCA
66 GCATATTGGCA-CCCTACCATCTTTAAGTC-CAATGTCACTGGCCT-TGAATCAACGCATTGGC-
* * * *
841891 AC-CTTCATCTTTAAATACAAATATCGC
127 ACTCTTCATCTTTAAGT-CCAATGTCGT
* * * * * * ** * * *
841918 TAG-TCTTGAATCAACATATTGGCACCTTTCTCAACTTTGAGTCCAATGTCGCTAGTCTTGAATC
1 TGGCT-TTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATC
* * * * * * ** * *
841982 AACATATTAGTACATCTACCATCTTCAAGTCTAATGTCGTTGGCCTTGAATCAACACATTGACAC
65 AGCATATTGGCAC-CCTACCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACGCATTGGCAC
* *
842047 TCGTCAAAACCTTCTTTCCAAAGTCCAATGTCAT
129 TCTTC---A---TCTTT---AAGTCCAATGTCGT
* * * * * * * *
842081 TGGCCTTGAATTAGCACATTGGCACCCTCATCATCTTCAAGTCCAATGTCACTGG-CTTGGAATC
1 TGGCTTTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTT-GAATC
** * *** * * * * *
842145 AGCACGTTGGCACCTTTGTTATCTTTAAG-CCTAGTGTCGCTGGCCGTGAATCAGCACATTGGCA
65 AGCATATTGGCACC-CTACCATCTTTAAGTCC-AATGTCACTGGCCTTGAATCAACGCATTGGC-
* **
842209 ACT-TTCATCTTTAAGTTCAATGTCAC
127 ACTCTTCATCTTTAAGTCCAATGTCGT
* * * * *
842235 TAGCCTTGAATCAGCACATTGGCACCTTTATCATCATTAA
1 TGGCTTTGAATCAGCATATTAGCACCCTTATCATC-TTAA
842275 GTCTAATGTA
Statistics
Matches: 650, Mismatches: 136, Indels: 79
0.75 0.16 0.09
Matches are distributed among these distances:
152 135 0.21
153 6 0.01
154 177 0.27
155 91 0.14
156 5 0.01
157 6 0.01
158 1 0.00
159 1 0.00
160 3 0.00
161 10 0.02
162 92 0.14
163 117 0.18
164 6 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (153 bp):
TGGCTTTGAATCAGCATATTAGCACCCTTATCATCTTAAAGTCCAATATCGCTGGCCTTGAATCA
GCATATTGGCACCCTACCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACGCATTGGCACTC
TTCATCTTTAAGTCCAATGTCGT
Found at i:842059 original size:317 final size:317
Alignment explanation
Indices: 841640--842263 Score: 716
Period size: 317 Copynumber: 2.0 Consensus size: 317
841630 ATCATCTTAA
* * * * * * *
841640 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCCTACCAGCTTTATGTCTAATGTTAC
1 AGTCCAATATCGCTAGCCTTGAATCAACATATTAGCACACCTACCAGCTTCAAGTCTAATGTCAC
* * ** * *
841705 TGGCCTTGAATCATCACATTAGCACTTGTCAAAACCTTCTTTCTGAAGTCCATTATCGCTAGCCT
66 TGGCCTTGAATCAACACATTAGCACTCGTCAAAACCTTCTTTCCAAAGTCCAATATCACTAGCCT
* ** ** * * ** *
841770 TGAA-TAACATATTGGCACTTTTGTTAACTTTAAGTCCAATGTTGCTGGCCTAGAATTAGCACAT
131 TGAATTAACACATTGGCACCCTCATCAACTTCAAGTCCAATGTCACTGGCCTAGAATCAGCACAT
* * **
841834 TGGCATCTTTGTCATCTTTAAGCTCTA-TGTCACTGGCTC-TGAATTATTACATTGGCAACCTTC
196 TGGCACCTTTGTCATCTTTAAGC-CTAGTGTCACTGGC-CGTGAATCAGCACATTGGCAACCTTC
* * *
841897 ATCTTTAAATACAAATATCGCTAGTCTTGAATCAACATATTGGCACCTTTCTCAACTTTG
259 ATCTTTAAATAC-AATATCACTAGCCTTGAATCAACACATTGGCACCTTTCTCAACTTTG
* * * * * **
841957 AGTCCAATGTCGCTAGTCTTGAATCAACATATTAGTACATCTACCATCTTCAAGTCTAATGTCGT
1 AGTCCAATATCGCTAGCCTTGAATCAACATATTAGCACACCTACCAGCTTCAAGTCTAATGTCAC
* * *
842022 TGGCCTTGAATCAACACATT-GACACTCGTCAAAACCTTCTTTCCAAAGTCCAATGTCATTGGCC
66 TGGCCTTGAATCAACACATTAG-CACTCGTCAAAACCTTCTTTCCAAAGTCCAATATCACTAGCC
* * * * *
842086 TTGAATTAGCACATTGGCACCCTCATCATCTTCAAGTCCAATGTCACTGGCTTGGAATCAGCACG
130 TTGAATTAACACATTGGCACCCTCATCAACTTCAAGTCCAATGTCACTGGCCTAGAATCAGCACA
* * *
842151 TTGGCACCTTTGTTATCTTTAAGCCTAGTGTCGCTGGCCGTGAATCAGCACATTGGCAACTTTCA
195 TTGGCACCTTTGTCATCTTTAAGCCTAGTGTCACTGGCCGTGAATCAGCACATTGGCAACCTTCA
* * * *
842216 TCTTTAAGTTCAATGTCACTAGCCTTGAATCAGCACATTGGCACCTTT
260 TCTTTAAATACAATATCACTAGCCTTGAATCAACACATTGGCACCTTT
842264 ATCATCATTA
Statistics
Matches: 251, Mismatches: 52, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
316 1 0.00
317 145 0.58
318 105 0.42
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (317 bp):
AGTCCAATATCGCTAGCCTTGAATCAACATATTAGCACACCTACCAGCTTCAAGTCTAATGTCAC
TGGCCTTGAATCAACACATTAGCACTCGTCAAAACCTTCTTTCCAAAGTCCAATATCACTAGCCT
TGAATTAACACATTGGCACCCTCATCAACTTCAAGTCCAATGTCACTGGCCTAGAATCAGCACAT
TGGCACCTTTGTCATCTTTAAGCCTAGTGTCACTGGCCGTGAATCAGCACATTGGCAACCTTCAT
CTTTAAATACAATATCACTAGCCTTGAATCAACACATTGGCACCTTTCTCAACTTTG
Found at i:842275 original size:102 final size:104
Alignment explanation
Indices: 842081--842275 Score: 261
Period size: 102 Copynumber: 1.9 Consensus size: 104
842071 CCAATGTCAT
* * * *
842081 TGGCCTTGAATTAGCACATTGGCACCCTCATCATCTTCAAGTCCAATGTCACTGGCTTGGAATCA
1 TGGCCGTGAATCAGCACATTGGCACACTCATCATCTTCAAGTCCAATGTCACTGCCTTGGAATCA
* * * *
842146 GCACGTTGGCACCTTTGTTATCTTTAAGCCTAGTGTCGC
66 GCACATTGGCACCTTTATCATCATTAAGCCTAGTGTCGC
* * *
842185 TGGCCGTGAATCAGCACATTGGCA-ACT-TTCATCTTTAAGTTCAATGTCACTAGCCTT-GAATC
1 TGGCCGTGAATCAGCACATTGGCACACTCATCATCTTCAAGTCCAATGTCACT-GCCTTGGAATC
842247 AGCACATTGGCACCTTTATCATCATTAAG
65 AGCACATTGGCACCTTTATCATCATTAAG
842276 TCTAATGTAG
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
102 51 0.65
103 6 0.08
104 22 0.28
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (104 bp):
TGGCCGTGAATCAGCACATTGGCACACTCATCATCTTCAAGTCCAATGTCACTGCCTTGGAATCA
GCACATTGGCACCTTTATCATCATTAAGCCTAGTGTCGC
Found at i:842297 original size:102 final size:104
Alignment explanation
Indices: 842083--842297 Score: 256
Period size: 102 Copynumber: 2.1 Consensus size: 104
842073 AATGTCATTG
* * *
842083 GCCTTGAATTAGCACATTGGCACCCTCATCATCTTCAAGTCCAATGTCACTGGCTTGGAATCAGC
1 GCCTTGAATCAGCACATTGGCACACTCATCATCTTCAAGTCCAATGTCACTGCCTTGGAATCAGC
* * * * * * **
842148 ACGTTGGCACCTTTGTTATCTTTAAGCCTAGTGTCGCTG
66 ACATTGGCACCTTTATCATCATTAAGCCTAATGTAGCAA
* * * *
842187 GCCGTGAATCAGCACATTGGCA-ACT-TTCATCTTTAAGTTCAATGTCACTAGCCTT-GAATCAG
1 GCCTTGAATCAGCACATTGGCACACTCATCATCTTCAAGTCCAATGTCACT-GCCTTGGAATCAG
*
842249 CACATTGGCACCTTTATCATCATTAAGTCTAATGTAGCAA
65 CACATTGGCACCTTTATCATCATTAAGCCTAATGTAGCAA
842289 GCCTTGAAT
1 GCCTTGAAT
842298 ATGCAAATTA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
102 67 0.72
103 6 0.06
104 20 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (104 bp):
GCCTTGAATCAGCACATTGGCACACTCATCATCTTCAAGTCCAATGTCACTGCCTTGGAATCAGC
ACATTGGCACCTTTATCATCATTAAGCCTAATGTAGCAA
Found at i:843412 original size:20 final size:19
Alignment explanation
Indices: 843357--843413 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
843347 AAAACCCTTA
*
843357 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
843377 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
843397 AATGTATCGATACATGT
1 AAAGTATCGATACATGT
843414 CATTGGGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:843479 original size:13 final size:13
Alignment explanation
Indices: 843461--843486 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
843451 TACACAAAAT
843461 ATGTATCGATACA
1 ATGTATCGATACA
843474 ATGTATCGATACA
1 ATGTATCGATACA
843487 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:843484 original size:32 final size:34
Alignment explanation
Indices: 843443--843507 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
843433 TAGCCAAACT
*
843443 TGTATCGATACAC-AAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAAATTGTATCGATACAA
843475 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAAATTGTATCGATACA
843508 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.43
33 5 0.17
34 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (34 bp):
TGTATCGATACACAAAAAAATTGTATCGATACAA
Found at i:845704 original size:21 final size:21
Alignment explanation
Indices: 845671--845720 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
845661 TTGCAAGTTG
*
845671 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
845693 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
845714 AAATAAA
1 AAATAAA
845721 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:847538 original size:15 final size:15
Alignment explanation
Indices: 847518--847548 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
847508 TAAAAATATC
*
847518 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
847533 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
847548 C
1 C
847549 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:849651 original size:13 final size:13
Alignment explanation
Indices: 849629--849666 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
849619 CATTTTTCTT
849629 TGTATCGATACAA
1 TGTATCGATACAA
* *
849642 TGTATTGATACAC
1 TGTATCGATACAA
849655 TGTATCGATACA
1 TGTATCGATACA
849667 GGGGGATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:852114 original size:20 final size:19
Alignment explanation
Indices: 852059--852114 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
852049 AAAACCTTTA
*
852059 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
852079 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
852099 AATGTATCGATACATG
1 AAAGTATCGATACATG
852115 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:852202 original size:13 final size:13
Alignment explanation
Indices: 852184--852209 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
852174 TACACAAAAT
852184 ATGTATCGATACA
1 ATGTATCGATACA
852197 ATGTATCGATACA
1 ATGTATCGATACA
852210 TAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:852207 original size:32 final size:34
Alignment explanation
Indices: 852166--852230 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
852156 TAGCCAAACT
* *
852166 TGTATCGATACA-CAAAATA-TGTATCGATACAA
1 TGTATCGATACATAAAAAAATTGTATCGATACAA
852198 TGTATCGATACATAAAAAAATTGTATCGATACA
1 TGTATCGATACATAAAAAAATTGTATCGATACA
852231 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 12 0.41
33 5 0.17
34 12 0.41
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (34 bp):
TGTATCGATACATAAAAAAATTGTATCGATACAA
Found at i:857505 original size:20 final size:20
Alignment explanation
Indices: 857454--857508 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
857444 ATTTAACTAG
*
857454 ATGTATCGATACATTAAGGA
1 ATGTATCGATATATTAAGGA
857474 ATGTATCGATATATTGAA-GA
1 ATGTATCGATATATT-AAGGA
*
857494 ATGTATTGATATATT
1 ATGTATCGATATATT
857509 TGGGTCAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.38
Consensus pattern (20 bp):
ATGTATCGATATATTAAGGA
Found at i:857562 original size:52 final size:51
Alignment explanation
Indices: 857493--857612 Score: 159
Period size: 52 Copynumber: 2.3 Consensus size: 51
857483 TATATTGAAG
* * * ** *
857493 AATGTATTGATATATTTGGGTCAAAAACCCAGAATGTATTGATACAACAAAA
1 AATGTATCGATACATTTGGGTCAAAAACCCAAAATGTATCAAGACAA-AAAA
* *
857545 AATGTATCGGTACATTTGGGTCAAAAACCCAAAATGTATCAAGACAATAAA
1 AATGTATCGATACATTTGGGTCAAAAACCCAAAATGTATCAAGACAAAAAA
857596 AATGTATCGATACATTT
1 AATGTATCGATACATTT
857613 CTTTTCCAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
51 19 0.32
52 40 0.68
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (51 bp):
AATGTATCGATACATTTGGGTCAAAAACCCAAAATGTATCAAGACAAAAAA
Found at i:861147 original size:29 final size:29
Alignment explanation
Indices: 861114--861172 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
861104 AGGCTAGGCA
**
861114 TGATCGGATGCCTATTGAAATTGATATTT
1 TGATCGGATGCCTATTGAAATCAATATTT
861143 TGATCGGATGCCTATTGAAATCAATATTT
1 TGATCGGATGCCTATTGAAATCAATATTT
861172 T
1 T
861173 AAGTTACGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.41
Consensus pattern (29 bp):
TGATCGGATGCCTATTGAAATCAATATTT
Found at i:862866 original size:44 final size:44
Alignment explanation
Indices: 862818--863447 Score: 339
Period size: 44 Copynumber: 14.3 Consensus size: 44
862808 GTGGTTACCA
* * * * * *
862818 CCCTAGTTAAACTCATTTCATCCCCGTTTGACGTGATGATTTTT
1 CCCTAGTTAAACTCCTTTCATCCTCATTTGACGTGATGGTTCTG
* * * * * *
862862 CCCTAGTCAAACTCTTTTCATCTTCGTTTGATGTAATGGTTCTG
1 CCCTAGTTAAACTCCTTTCATCCTCATTTGACGTGATGGTTCTG
* * * * *
862906 CCCTTGTTAAACTTCTTTCA-CTATCGTTTGACATGATGGTTCTG
1 CCCTAGTTAAACTCCTTTCATC-CTCATTTGACGTGATGGTTCTG
* * *
862950 CCCTAGTTAAACTCCTTTCATCC-CTATTTGATGTAATGGTTCTA
1 CCCTAGTTAAACTCCTTTCATCCTC-ATTTGACGTGATGGTTCTG
* * * * *
862994 CCTTGGTTAAACTCCTTTCA-CTATCATTTGACGTGATGGTTTTA
1 CCCTAGTTAAACTCCTTTCATC-CTCATTTGACGTGATGGTTCTG
* * *
863038 CCTTAGTCAAACTCCTTTAATCCTCATTTGACGTGATGGTTCTG
1 CCCTAGTTAAACTCCTTTCATCCTCATTTGACGTGATGGTTCTG
* * * ** * *
863082 CCCTAGTCAAACTCCTTTC-GCTATTTTTTGACATGATCGTTCTG
1 CCCTAGTTAAACTCCTTTCATC-CTCATTTGACGTGATGGTTCTG
* * * * * *
863126 CCTTGGTCAAACTCCTTTCATCCTCGTTTGAAGTGATGGTT-TAT
1 CCCTAGTTAAACTCCTTTCATCCTCATTTGACGTGATGGTTCT-G
* * * * * * * * *
863170 TCTTGGTCAAACTTCTTTCA-CTATCGTTTAACATGATGGTTCTG
1 CCCTAGTTAAACTCCTTTCATC-CTCATTTGACGTGATGGTTCTG
* * * * * *
863214 CCTTGGTCAAACTTCTTTCATCC-CTATTTGACATGATGGTTTTG
1 CCCTAGTTAAACTCCTTTCATCCTC-ATTTGACGTGATGGTTCTG
* * * * * *
863258 CCTTAGTAAAAATCCTTTCA-CTATCGTTTGACGTGATGGTT-TAA
1 CCCTAGTTAAACTCCTTTCATC-CTCATTTGACGTGATGGTTCT-G
* * ** * *
863302 CCCTAGTCAAACTCTTTTCATCCTCGGTTGATGTGATGGTTCTA
1 CCCTAGTTAAACTCCTTTCATCCTCATTTGACGTGATGGTTCTG
* * *
863346 CCCTAGTTAAACTTCTTTCA--CTATAGTTTGACGTGATGGTTCTA
1 CCCTAGTTAAACTCCTTTCATCCT-CA-TTTGACGTGATGGTTCTG
* * * * * * * *
863390 CCCTGGTCAAACCCCTTTTAACTATCATTTAACGTGATGGATCT-
1 CCCTAGTTAAACTCCTTTCATC-CTCATTTGACGTGATGGTTCTG
* *
863434 ACCTAGTCAAACTC
1 CCCTAGTTAAACTC
863448 TGCTTACTTC
Statistics
Matches: 462, Mismatches: 101, Indels: 46
0.76 0.17 0.08
Matches are distributed among these distances:
42 2 0.00
43 9 0.02
44 425 0.92
45 24 0.05
46 1 0.00
47 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (44 bp):
CCCTAGTTAAACTCCTTTCATCCTCATTTGACGTGATGGTTCTG
Found at i:862936 original size:88 final size:89
Alignment explanation
Indices: 862842--863407 Score: 538
Period size: 88 Copynumber: 6.4 Consensus size: 89
862832 ATTTCATCCC
* * * * * * *
862842 CGTTTGACGTGATGATTTTTCCCTAGTCAAACTCTTTTCATCTTCGTTTGATGTAATGGTTCTGC
1 CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTCATCCTCATTTGATGTGATGGTTCTGC
*
862907 CCTT-GTTAAACTTCTTTCACTAT
66 CCTTGGTTAAACTCCTTTCACTAT
* * * *
862930 CGTTTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCC-CTATTTGATGTAATGGTTCT-
1 CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTCATCCTC-ATTTGATGTGATGGTTCTG
*
862993 ACCTTGGTTAAACTCCTTTCACTAT
65 CCCTTGGTTAAACTCCTTTCACTAT
* * * * *
863018 CATTTGACGTGATGGTTTTACCTTAGTCAAACTCCTTTAATCCTCATTTGACGTGATGGTTCTGC
1 CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTCATCCTCATTTGATGTGATGGTTCTGC
* * *
863083 CC-TAGTCAAACTCCTTTCGCTAT
66 CCTTGGTTAAACTCCTTTCACTAT
** * * * * * * * **
863106 TTTTTGACATGATCGTTCTGCCTTGGTCAAACTCCTTTCATCCTCGTTTGAAGTGATGGTT-TAT
1 CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTCATCCTCATTTGATGTGATGGTTCTGC
* * *
863170 TCTTGGTCAAACTTCTTTCACTAT
66 CCTTGGTTAAACTCCTTTCACTAT
* * * * * * ** *
863194 CGTTTAACATGATGGTTCTGCCTTGGTCAAACTTCTTTCATCC-CTATTTGACATGATGGTTTTG
1 CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTCATCCTC-ATTTGATGTGATGGTTCTG
* * *
863258 -CCTTAGTAAAAATCCTTTCACTAT
65 CCCTTGGTTAAACTCCTTTCACTAT
* ** *
863282 CGTTTGACGTGATGGTT-TAACCCTAGTCAAACTCTTTTCATCCTCGGTTGATGTGATGGTTCTA
1 CGTTTGACGTGATGGTTCT-ACCCTAGTCAAACTCCTTTCATCCTCATTTGATGTGATGGTTCTG
* *
863346 CCC-TAGTTAAACTTCTTTCACTAT
65 CCCTTGGTTAAACTCCTTTCACTAT
* * *
863370 AGTTTGACGTGATGGTTCTACCCTGGTCAAACCCCTTT
1 CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTT
863408 TAACTATCAT
Statistics
Matches: 394, Mismatches: 73, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
87 9 0.02
88 377 0.96
89 8 0.02
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (89 bp):
CGTTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTCATCCTCATTTGATGTGATGGTTCTGC
CCTTGGTTAAACTCCTTTCACTAT
Found at i:862972 original size:132 final size:133
Alignment explanation
Indices: 862801--863446 Score: 512
Period size: 132 Copynumber: 4.9 Consensus size: 133
862791 TCATTCCTAC
** * ** * * * * *
862801 TTGACATG-TGGTTACCACCCTAGTTAAACTCATTTCATCCCCGTTTGACGTGATGATTTTTCCC
1 TTGACATGATGGTT-CTGCCCTAGTTAAACTCCTTTCATCCCTATTTGACATGATGGTTCTGCCT
* * * * *
862865 TAGTCAAACTCTTTTCATCT-TCGTTTGATGTAATGGTTCTGCCCTT-GTTAAACTTCTTTCACT
65 TAGTCAAACTCCTTTCA-CTATCGTTTGACGTGATGGTT-TACCCTTAGTCAAACTTCTTTCACT
862928 -ATCGT
128 CATCGT
** * *
862933 TTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCCCTATTTGATGTAATGGTTCTACCTT
1 TTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCCCTATTTGACATGATGGTTCTGCCTT
* * * * * *
862998 GGTTAAACTCCTTTCACTATCATTTGACGTGATGGTTTTA-CCTTAGTCAAACTCCTTT-AATCC
66 AGTCAAACTCCTTTCACTATCGTTTGACGTGATGG-TTTACCCTTAGTCAAACTTCTTTCACTCA
*
863061 TCAT
130 TCGT
* * * ** * *
863065 TTGACGTGATGGTTCTGCCCTAGTCAAACTCCTTTC-GCTATTTTTTGACATGATCGTTCTGCCT
1 TTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATC-CCTATTTGACATGATGGTTCTGCCT
* * * ** *
863129 TGGTCAAACTCCTTTCA-TCCTCGTTTGAAGTGATGGTTTATTCTTGGTCAAACTTCTTTCACT-
65 TAGTCAAACTCCTTTCACT-ATCGTTTGACGTGATGGTTTACCCTTAGTCAAACTTCTTTCACTC
863192 ATCGT
129 ATCGT
* * * * * *
863197 TTAACATGATGGTTCTGCCTTGGTCAAACTTCTTTCATCCCTATTTGACATGATGGTTTTGCCTT
1 TTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCCCTATTTGACATGATGGTTCTGCCTT
* *
863262 AGTAAAAATCCTTTCACTATCGTTTGACGTGATGGTTTAACCC-TAGTCAAAC-TCTTTTCA-TC
66 AGTCAAACTCCTTTCACTATCGTTTGACGTGATGGTTT-ACCCTTAGTCAAACTTC-TTTCACTC
* *
863324 CTCGG
129 ATCGT
** * * ** * * *
863329 TTGATGTGATGGTTCTACCCTAGTTAAACTTCTTTCA-CTATAGTTTGACGTGATGGTTCTACCC
1 TTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCCCTA-TTTGACATGATGGTTCTGCCT
* * * * * *
863393 TGGTCAAACCCCTTTTAACTATCATTTAACGTGATGGATCTA-CC-TAGTCAAACT
65 TAGTCAAACTCC-TTTCACTATCGTTTGACGTGATGG-TTTACCCTTAGTCAAACT
863447 CTGCTTACTT
Statistics
Matches: 410, Mismatches: 86, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
131 20 0.05
132 353 0.86
133 35 0.09
134 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (133 bp):
TTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCCCTATTTGACATGATGGTTCTGCCTT
AGTCAAACTCCTTTCACTATCGTTTGACGTGATGGTTTACCCTTAGTCAAACTTCTTTCACTCAT
CGT
Found at i:863117 original size:176 final size:176
Alignment explanation
Indices: 862844--863447 Score: 628
Period size: 176 Copynumber: 3.4 Consensus size: 176
862834 TTCATCCCCG
* * * * * * * * *
862844 TTTGACGTGATGATTTTTCCCTAGTCAAACTCTTTTCATCTTCGTTTGATGTAATGGTTCTGCCC
1 TTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTAATCCTCATTTGACGTGATGGTTCTGCCC
* * * *
862909 TTGTTAAACTTCTTTCACTATCGTTTGACATGATGGTTCTGCCCTAGTTAAACTCCTTTCATCC-
66 TAGTCAAACTCCTTTCACTATCGTTTGACATGATGGTTCTGCCCTAGTCAAACTCCTTTCATCCT
* * *
862973 CTATTTGATGTAATGGTTCTACCTTGGTTAAACTCCTTTCACTATCA
131 C-GTTTGATGTGATGGTTCTACCTTGGTTAAACTTCTTTCACTATCA
* *
863020 TTTGACGTGATGGTTTTACCTTAGTCAAACTCCTTTAATCCTCATTTGACGTGATGGTTCTGCCC
1 TTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTAATCCTCATTTGACGTGATGGTTCTGCCC
* ** * * *
863085 TAGTCAAACTCCTTTCGCTATTTTTTGACATGATCGTTCTGCCTTGGTCAAACTCCTTTCATCCT
66 TAGTCAAACTCCTTTCACTATCGTTTGACATGATGGTTCTGCCCTAGTCAAACTCCTTTCATCCT
* * * *
863150 CGTTTGAAGTGATGGTT-TATTCTTGGTCAAACTTCTTTCACTATCG
131 CGTTTGATGTGATGGTTCTA-CCTTGGTTAAACTTCTTTCACTATCA
* * * * * * * * *
863196 TTTAACATGATGGTTCTGCCTTGGTCAAACTTCTTTCATCC-CTATTTGACATGATGGTTTTGCC
1 TTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTAATCCTC-ATTTGACGTGATGGTTCTGCC
* * * * * *
863260 TTAGTAAAAATCCTTTCACTATCGTTTGACGTGATGGTT-TAACCCTAGTCAAACTCTTTTCATC
65 CTAGTCAAACTCCTTTCACTATCGTTTGACATGATGGTTCT-GCCCTAGTCAAACTCCTTTCATC
* * *
863324 CTCGGTTGATGTGATGGTTCTACCCTAGTTAAACTTCTTTCACTAT-A
129 CTCGTTTGATGTGATGGTTCTACCTTGGTTAAACTTCTTTCACTATCA
* * * * *
863371 GTTTGACGTGATGGTTCTACCCTGGTCAAACCCCTTTTAA-CTATCATTTAACGTGATGGATCT-
1 -TTTGACGTGATGGTTCTACCCTAGTCAAACTCC-TTTAATC-CTCATTTGACGTGATGGTTCTG
*
863434 ACCTAGTCAAACTC
63 CCCTAGTCAAACTC
863448 TGCTTACTTC
Statistics
Matches: 349, Mismatches: 70, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
175 4 0.01
176 323 0.93
177 21 0.06
178 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.41
Consensus pattern (176 bp):
TTTGACGTGATGGTTCTACCCTAGTCAAACTCCTTTAATCCTCATTTGACGTGATGGTTCTGCCC
TAGTCAAACTCCTTTCACTATCGTTTGACATGATGGTTCTGCCCTAGTCAAACTCCTTTCATCCT
CGTTTGATGTGATGGTTCTACCTTGGTTAAACTTCTTTCACTATCA
Found at i:863698 original size:42 final size:42
Alignment explanation
Indices: 863563--863709 Score: 138
Period size: 43 Copynumber: 3.5 Consensus size: 42
863553 CAGGTAGCTT
* *
863563 TTTATCCTTTGTTGACTTGTTGATTCAACCC-AGTCAACTTC
1 TTTATCCTTTGTTTACTTGTCGATTCAACCCTAGTCAACTTC
** * * ** * *
863604 TTTATCCTTCATTTACTTGTCAACGT-AGTCCTAGAT-AAATCC
1 TTTATCCTTTGTTTACTTGTCGA-TTCAACCCTAG-TCAACTTC
* *
863646 TTTTATCCTTTGTTAACTTATCGATTCAACCCTAGTCAACTTC
1 -TTTATCCTTTGTTTACTTGTCGATTCAACCCTAGTCAACTTC
863689 TTTATCCTTTGTTTACTTGTC
1 TTTATCCTTTGTTTACTTGTC
863710 AACTTTGTCT
Statistics
Matches: 78, Mismatches: 22, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
41 21 0.27
42 28 0.36
43 29 0.37
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.46
Consensus pattern (42 bp):
TTTATCCTTTGTTTACTTGTCGATTCAACCCTAGTCAACTTC
Found at i:863759 original size:85 final size:84
Alignment explanation
Indices: 863562--863759 Score: 254
Period size: 85 Copynumber: 2.3 Consensus size: 84
863552 TCAGGTAGCT
*
863562 TTTTATCCTTTGTTGACTTGTTGATTCAACCCAGTCAACTTCTTTATCCTTCATTTACTTGTCAA
1 TTTTATCCTTTGTTGACTTATTGATTCAACCCAGTCAACTTCTTTATCCTTCATTTACTTGTCAA
863627 CGTAGTCCTAGATAAATCC
66 CGTAGTCCTAGATAAATCC
* * **
863646 TTTTATCCTTTGTTAACTTATCGATTCAACCCTAGTCAACTTCTTTATCCTTTGTTTACTTGTCA
1 TTTTATCCTTTGTTGACTTATTGATTCAACCC-AGTCAACTTCTTTATCCTTCATTTACTTGTCA
* * * *
863711 ACTTTGT-CTCGGGTAAATCC
65 ACGTAGTCCT-AGATAAATCC
* * * *
863731 TTTTATCTTTTATTGACTTTTTGGTTCAA
1 TTTTATCCTTTGTTGACTTATTGATTCAA
863760 TCTCGGTCTA
Statistics
Matches: 97, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
84 31 0.32
85 66 0.68
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.47
Consensus pattern (84 bp):
TTTTATCCTTTGTTGACTTATTGATTCAACCCAGTCAACTTCTTTATCCTTCATTTACTTGTCAA
CGTAGTCCTAGATAAATCC
Done.