Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold377
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 247558
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
File 1 of 2
Found at i:46 original size:28 final size:28
Alignment explanation
Indices: 4--878 Score: 1087
Period size: 28 Copynumber: 30.8 Consensus size: 28
1 GTC
4 GTGGCACTCCTTTCAAAGCCCACAAGTCA
1 GTGGCAC-CCTTTCAAAGCCCACAAGTCA
33 GTGGCACCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
61 GTGGCACTCTTTCAAA-CCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
88 GTGGCACCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
116 GTGGCACCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * * *
144 GTGGTACCTTTTCAAAGCCTACGA-TCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
171 GTGGCACTCTTTCAAAG-CC-C-AGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
196 GTGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
224 GTGGCACCCTTTCAAAACCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
252 GTGGCACTCCTTTCAAAGCCCACAAGTCA
1 GTGGCAC-CCTTTCAAAGCCCACAAGTCA
* *
281 GTGGCACTCTTTTCAAAGCCCACAAATCA
1 GTGGCAC-CCTTTCAAAGCCCACAAGTCA
* *
310 GTGGCATCTTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
338 ATGGCACCCTTTCAAAGCCCACAAGTTA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
366 GTGGCACCATTTCAGAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
394 GTGGCACCCTTTCGAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * * * *
422 GTGGCACCATTGCGAAGCCCATAATTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
450 GTGGCACTCTTTCAAAGCTCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
478 GTGGCACCTTTTTAAAGCCCACACAAGTCA
1 GTGGCACCCTTTCAAAG-CC-CACAAGTCA
* *
508 GTGGCACTCCTTTTAAAGCTCACGCAAGTCA
1 GTGGCAC-CCTTTCAAAGC-C-CACAAGTCA
* * * * *
539 GTGGTACCTTTTCAAAGCCTACGAGTTA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
567 GTGGCACTCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
595 GTGGCATCCTTTCAAAGCCCACGAGTTA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
623 GTGGCACCCTTTCAAAGCCCACACAAGTCA
1 GTGGCACCCTTTCAAAG-CC-CACAAGTCA
653 GTGGCACTCCTTTCAAAGCCCACGCAAGTCA
1 GTGGCAC-CCTTTCAAAGCCCA--CAAGTCA
* **
684 GTGGCACCTTTTCAAAGCCCATGAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
712 GTGGCACTCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
740 GTGGCACCCTTTC-AAGCCCACGAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
767 GTGGTACCTTTTCAAAGCCCACGAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
795 GTGGCATCCTTTCAAAGCCCACACAAGTCA
1 GTGGCACCCTTTCAAAG-CC-CACAAGTCA
* *
825 GTGGCACCTTTTTAAAGCCCACGCAAGTCA
1 GTGGCACCCTTTCAAAGCCCA--CAAGTCA
** *
855 GTAACACTCTTTTCAAAGCCCACA
1 GTGGCAC-CCTTTCAAAGCCCACA
879 TGTGTCTGTG
Statistics
Matches: 737, Mismatches: 88, Indels: 42
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.00
25 19 0.03
26 3 0.00
27 68 0.09
28 423 0.57
29 72 0.10
30 89 0.12
31 62 0.08
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (28 bp):
GTGGCACCCTTTCAAAGCCCACAAGTCA
Found at i:596 original size:145 final size:141
Alignment explanation
Indices: 4--878 Score: 1103
Period size: 145 Copynumber: 6.2 Consensus size: 141
1 GTC
* *
4 GTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-C
1 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACC
68 TCTTTCAAA-CCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
66 T-TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
132 GCCCACAAGTCA
130 GCCCACAAGTCA
* * *
144 GTGGTAC-CTTTTCAAAGCCTACGA-TCAGTGGCACTCTTTCAAAG-CC-C-AGTCAGTGGCATC
1 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCA-C
*
204 C-TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAACCCACAAGTCAGTGGCACTCCTTTCAA
65 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAA
268 AGCCCACAAGTCA
129 AGCCCACAAGTCA
* *
281 GTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAATGGCAC
1 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCAC
* * * * *
345 CCTTTCAAAGCCCACAAGTTAGTGGCACCATTTCAGAGCCCACAAGTCAGTGGCACCCTTTCGAA
65 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
410 GCCCACAAGTCA
130 GCCCACAAGTCA
* * * * * *
422 GTGGCAC-CATTGCGAAGCCCATAATTCAGTGGCACTCTTTCAAAGCTCACAAGTCAGTGGCACC
1 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * *
486 TTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTTAAAGCTCACGCAAGTCAGTGGTACCTTTT
66 TTTTCAAAG-CC-CACAAGTCAGTGGCAC-CCTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTT
* * *
551 CAAAGCCTACGAGTTA
126 CAAAGCCCACAAGTCA
* *
567 GTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACGAGTTAGTGGCAC
1 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACT-CTTTCAAAGCCCACAAGTCAGTGGCAC
* *
630 CCTTTCAAAGCCCACACAAGTCAGTGGCACTCCTTTCAAAGCCCACGCAAGTCAGTGGCACCTTT
65 CTTTTCAAAG-CC-CACAAGTCAGTGGCAC-CCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTT
**
695 TCAAAGCCCATGAGTCA
125 TCAAAGCCCACAAGTCA
* * *
712 GTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCACCCTTTC-AAGCCCACGAGTCAGTGGTACC
1 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACC
* * * *
775 TTTTCAAAGCCCACGAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCAGTGGCACCTTTTTAA
66 TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTTCAA
840 AGCCCACGCAAGTCA
129 AGCCCA--CAAGTCA
**
855 GTAACACTCTTTTCAAAGCCCACA
1 GTGGCACTCTTTTCAAAGCCCACA
879 TGTGTCTGTG
Statistics
Matches: 647, Mismatches: 61, Indels: 50
0.85 0.08 0.07
Matches are distributed among these distances:
135 18 0.03
136 46 0.07
137 30 0.05
138 36 0.06
139 31 0.05
140 62 0.10
141 71 0.11
142 91 0.14
143 25 0.04
144 45 0.07
145 191 0.30
146 1 0.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (141 bp):
GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACC
TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
CCCACAAGTCA
Found at i:1536 original size:20 final size:20
Alignment explanation
Indices: 1490--1563 Score: 51
Period size: 20 Copynumber: 3.7 Consensus size: 20
1480 TTTTACCTTG
* * *
1490 ATGTATCGATACATTTTTCA
1 ATGTATCAATACATGTATCA
* *
1510 ATATATCAATACATGTATGA
1 ATGTATCAATACATGTATCA
* * *
1530 ATGTATCGATATAT-TCTACA
1 ATGTATCAATACATGTAT-CA
*
1550 ATGTATCGATACAT
1 ATGTATCAATACAT
1564 TATGTCTTTT
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 2 0.05
20 40 0.95
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (20 bp):
ATGTATCAATACATGTATCA
Found at i:1562 original size:40 final size:39
Alignment explanation
Indices: 1490--1567 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
1480 TTTTACCTTG
* *
1490 ATGTATCGATACATTTTTCAATATATCAATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCAATACAT-TATGA
* * *
1530 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCAATACATTATG
1568 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCAATACATTATGA
Found at i:2509 original size:22 final size:22
Alignment explanation
Indices: 2481--2527 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
2471 TGACCATGCA
2481 TTTTTATTATGTTTCATGCATT
1 TTTTTATTATGTTTCATGCATT
2503 TTTTTATTATGTTTCATGCATT
1 TTTTTATTATGTTTCATGCATT
2525 TTT
1 TTT
2528 AACATGTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.09, G:0.09, T:0.66
Consensus pattern (22 bp):
TTTTTATTATGTTTCATGCATT
Found at i:2534 original size:20 final size:20
Alignment explanation
Indices: 2475--2528 Score: 90
Period size: 22 Copynumber: 2.6 Consensus size: 20
2465 AGCCTTTGAC
2475 CATGCATTTTTATTATGTTT
1 CATGCATTTTTATTATGTTT
2495 CATGCATTTTTTTATTATGTTT
1 CATGCA--TTTTTATTATGTTT
2517 CATGCATTTTTA
1 CATGCATTTTTA
2529 ACATGTCCAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.38
22 20 0.62
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.59
Consensus pattern (20 bp):
CATGCATTTTTATTATGTTT
Found at i:7420 original size:11 final size:11
Alignment explanation
Indices: 7404--7433 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7394 CAAATTAAAA
7404 AATTATTTAAT
1 AATTATTTAAT
7415 AATTATTTAAT
1 AATTATTTAAT
7426 AA-TATTTA
1 AATTATTTA
7434 TATGAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.32
11 13 0.68
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AATTATTTAAT
Found at i:13756 original size:20 final size:20
Alignment explanation
Indices: 13708--13747 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
13698 TTATAGTTAT
*
13708 ATTAAATATTTTTAAAATTA
1 ATTATATATTTTTAAAATTA
13728 ATTATATATTTTTAAAATTA
1 ATTATATATTTTTAAAATTA
13748 TATCTATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTATATATTTTTAAAATTA
Found at i:13766 original size:79 final size:80
Alignment explanation
Indices: 13662--13813 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 80
13652 TAAATATAAA
* * * **
13662 AAAAATATATTTATACGTTACATA-TTTTAAAAT-TAATT-ATAGTTATATTAAATATTTTTAAA
1 AAAAATATATCTATACGTTACATATTTTTAAAATATAATTAAAAATTATATT-AATA-TTAAAAA
13724 ATTAATTATATATTTTT
64 ATTAATTATATATTTTT
* * *
13741 AAAATTATATCTATATGTTAGATATTTTTAAAATAATAATTAAAAATTATATTAATATTAAAAAA
1 AAAAATATATCTATACGTTACATATTTTTAAAAT-ATAATTAAAAATTATATTAATATTAAAAAA
13806 TTAATTAT
65 TTAATTAT
13814 TAAAATTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
79 20 0.33
80 9 0.15
81 14 0.23
82 9 0.15
83 9 0.15
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (80 bp):
AAAAATATATCTATACGTTACATATTTTTAAAATATAATTAAAAATTATATTAATATTAAAAAAT
TAATTATATATTTTT
Found at i:13803 original size:30 final size:32
Alignment explanation
Indices: 13768--13838 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
13758 TTAGATATTT
13768 TTAAAATAA-TAATTA-AAAATTATATTAATA
1 TTAAAATAATTAATTATAAAATTATATTAATA
*
13798 TTAAAA-AATTAATTATTAAAATTATATTTATA
1 TTAAAATAATTAATTA-TAAAATTATATTAATA
13830 TTAAAATAA
1 TTAAAATAA
13839 ATTATGAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
29 2 0.06
30 12 0.33
32 20 0.56
33 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (32 bp):
TTAAAATAATTAATTATAAAATTATATTAATA
Found at i:13816 original size:21 final size:19
Alignment explanation
Indices: 13782--13835 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
13772 AATAATAATT
13782 AAAAATTATATTAATATTA
1 AAAAATTATATTAATATTA
13801 AAAAATTA-A-T--TATT-
1 AAAAATTATATTAATATTA
*
13815 -AAAATTATATTTATATTA
1 AAAAATTATATTAATATTA
13833 AAA
1 AAA
13836 TAAATTATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
13 7 0.24
14 1 0.03
15 5 0.17
17 5 0.17
18 1 0.03
19 10 0.34
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAAATTATATTAATATTA
Found at i:13833 original size:17 final size:17
Alignment explanation
Indices: 13783--13836 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
13773 ATAATAATTA
13783 AAAATTATATTAATATT
1 AAAATTATATTAATATT
13800 AAAA--A-ATTAATTATT
1 AAAATTATATTAA-TATT
*
13815 AAAATTATATTTATATT
1 AAAATTATATTAATATT
13832 AAAAT
1 AAAAT
13837 AAATTATGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
14 5 0.16
15 9 0.28
17 14 0.44
18 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTATATTAATATT
Found at i:13842 original size:30 final size:29
Alignment explanation
Indices: 13768--13848 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 29
13758 TTAGATATTT
*
13768 TTAAAATAATAATTAAAAATTATATTAATA
1 TTAAAATAATTATT-AAAATTATATTAATA
*
13798 TTAAAAAATTAATTATTAAAATTATATTTATA
1 TT--AAAA-TAATTATTAAAATTATATTAATA
*
13830 TTAAAATAAATTATGAAAA
1 TTAAAAT-AATTATTAAAA
13849 ATAAAAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
29 1 0.02
30 16 0.36
32 20 0.45
33 7 0.16
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (29 bp):
TTAAAATAATTATTAAAATTATATTAATA
Found at i:19422 original size:19 final size:17
Alignment explanation
Indices: 19400--19466 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 17
19390 AAATTTTTTT
19400 AAAAAATTATTTTCAAATAA
1 AAAAAATT-TTTT-AAAT-A
19420 AAAGTAAATTTTTTAAATA
1 AAA--AAATTTTTTAAATA
19439 AAAATAATTTTTTAAAAATA
1 AAAA-AATTTTTT--AAATA
19459 AAAAAATT
1 AAAAAATT
19467 AATTATTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.02
18 8 0.19
19 8 0.19
20 16 0.38
21 4 0.10
22 5 0.12
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (17 bp):
AAAAAATTTTTTAAATA
Found at i:19462 original size:20 final size:18
Alignment explanation
Indices: 19400--19454 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
19390 AAATTTTTTT
19400 AAAA-AATTATTTTCAAATA
1 AAAATAATT-TTTT-AAATA
19419 AAAAGTAAATTTTTTAAATA
1 AAAA-T-AATTTTTTAAATA
19439 AAAATAATTTTTTAAA
1 AAAATAATTTTTTAAA
19455 AATAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
18 11 0.33
19 5 0.15
20 9 0.27
21 4 0.12
22 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (18 bp):
AAAATAATTTTTTAAATA
Found at i:19695 original size:26 final size:28
Alignment explanation
Indices: 19662--19717 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 28
19652 AGTAAAAATT
19662 AAAAATTATTTAAT-TATTATTTT-TTA
1 AAAAATTATTTAATATATTATTTTATTA
*
19688 AAAAATTATTTAATATTTTATTTTATTA
1 AAAAATTATTTAATATATTATTTTATTA
19716 AA
1 AA
19718 TTTAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 14 0.52
27 8 0.30
28 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
AAAAATTATTTAATATATTATTTTATTA
Found at i:19772 original size:17 final size:16
Alignment explanation
Indices: 19736--19774 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
19726 ATCAATACAT
19736 TAAATA-TATTCTTTA
1 TAAATATTATTCTTTA
*
19751 TAAATATTATTTTTTAA
1 TAAATATTATTCTTT-A
19768 TAAATAT
1 TAAATAT
19775 AATTAAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.29
16 7 0.33
17 8 0.38
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
TAAATATTATTCTTTA
Found at i:21009 original size:1 final size:1
Alignment explanation
Indices: 21003--21032 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
20993 TAATACTTTG
21003 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
21033 AAAAAAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:32288 original size:13 final size:13
Alignment explanation
Indices: 32270--32325 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 13
32260 TTTCTTCATG
32270 TATCGATACAATT
1 TATCGATACAATT
32283 TATCGATAC-A--
1 TATCGATACAATT
* *
32293 T-T-G-TACCATG
1 TATCGATACAATT
32303 TATCGATACAATT
1 TATCGATACAATT
32316 TATCGATACA
1 TATCGATACA
32326 TTGTACCATG
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
7 3 0.09
8 2 0.06
9 1 0.03
10 2 0.06
11 1 0.03
12 2 0.06
13 24 0.69
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (13 bp):
TATCGATACAATT
Found at i:32292 original size:33 final size:33
Alignment explanation
Indices: 32250--32346 Score: 162
Period size: 33 Copynumber: 2.9 Consensus size: 33
32240 ACATGCTATG
32250 TATCGATACATT-T-CTTCATGTATCGATACAATT
1 TATCGATACATTGTAC--CATGTATCGATACAATT
32283 TATCGATACATTGTACCATGTATCGATACAATT
1 TATCGATACATTGTACCATGTATCGATACAATT
32316 TATCGATACATTGTACCATGTATCGATACAA
1 TATCGATACATTGTACCATGTATCGATACAA
32347 ATAGTGATAA
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
33 60 0.97
34 1 0.02
35 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (33 bp):
TATCGATACATTGTACCATGTATCGATACAATT
Found at i:32308 original size:20 final size:20
Alignment explanation
Indices: 32283--32345 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
32273 CGATACAATT
32283 TATCGATACATTGTACCATG
1 TATCGATACATTGTACCATG
*
32303 TATCGATAC-----A--ATT
1 TATCGATACATTGTACCATG
32316 TATCGATACATTGTACCATG
1 TATCGATACATTGTACCATG
32336 TATCGATACA
1 TATCGATACA
32346 AATAGTGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
13 11 0.32
15 1 0.03
18 1 0.03
20 21 0.62
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (20 bp):
TATCGATACATTGTACCATG
Found at i:32420 original size:19 final size:19
Alignment explanation
Indices: 32376--32431 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
32366 TGCCAGTTTT
**
32376 ATGTATCGATACAATTTGGCC
1 ATGTATCGATACAA--TGAAC
32397 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATGAAC
32416 ATGTATCGATACAATG
1 ATGTATCGATACAATG
32432 TATCGATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 19 0.58
21 14 0.42
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:32434 original size:13 final size:13
Alignment explanation
Indices: 32416--32442 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32406 TACAATGAAC
32416 ATGTATCGATACA
1 ATGTATCGATACA
32429 ATGTATCGATACA
1 ATGTATCGATACA
32442 A
1 A
32443 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32457 original size:33 final size:32
Alignment explanation
Indices: 32397--32461 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
32387 CAATTTGGCC
*
32397 ATGTATCGATACAATGAACATGTATCGATACA
1 ATGTATCGATACAAAGAACATGTATCGATACA
*
32429 ATGTATCGATACAAAGCAGCATGTATCGATACA
1 ATGTATCGATACAAAG-AACATGTATCGATACA
32462 TTTGGGTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (32 bp):
ATGTATCGATACAAAGAACATGTATCGATACA
Found at i:34903 original size:13 final size:13
Alignment explanation
Indices: 34885--34912 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34875 AATAGTACCT
34885 AATGTATCGATAC
1 AATGTATCGATAC
34898 AATGTATCGATAC
1 AATGTATCGATAC
34911 AA
1 AA
34913 GGAATGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:41998 original size:13 final size:13
Alignment explanation
Indices: 41980--42005 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41970 CAATTTTTTG
41980 TGTATCGATACAT
1 TGTATCGATACAT
41993 TGTATCGATACAT
1 TGTATCGATACAT
42006 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44533 original size:13 final size:13
Alignment explanation
Indices: 44515--44553 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
44505 ATAATCACCC
*
44515 TGTATCGATACAG
1 TGTATCGATACAA
44528 TGTATCGATACAA
1 TGTATCGATACAA
44541 TGTATCGATACAA
1 TGTATCGATACAA
44554 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:44564 original size:20 final size:20
Alignment explanation
Indices: 44539--44617 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
44529 GTATCGATAC
44539 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
44559 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
44584 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
44604 CATGTATCGATACA
1 AATGTATCGATACA
44618 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:46651 original size:15 final size:15
Alignment explanation
Indices: 46631--46661 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46621 ATTTTGTTTG
*
46631 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
46646 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
46661 G
1 G
46662 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:48494 original size:21 final size:21
Alignment explanation
Indices: 48465--48509 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
48455 AAGTTTTCAT
*
48465 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
48485 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
48507 TTT
1 TTT
48510 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:50746 original size:13 final size:13
Alignment explanation
Indices: 50728--50753 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50718 CAATTTTTTG
50728 TGTATCGATACAT
1 TGTATCGATACAT
50741 TGTATCGATACAT
1 TGTATCGATACAT
50754 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:53505 original size:77 final size:77
Alignment explanation
Indices: 53412--53568 Score: 314
Period size: 77 Copynumber: 2.0 Consensus size: 77
53402 TTTAAATGCC
53412 TTAGATTTTATTTGTAAGCCACGAATGTATATGGTTAAGTATGAAAATAATTTTTTTCTTTTTTC
1 TTAGATTTTATTTGTAAGCCACGAATGTATATGGTTAAGTATGAAAATAATTTTTTTCTTTTTTC
53477 TTTCACTTACCT
66 TTTCACTTACCT
53489 TTAGATTTTATTTGTAAGCCACGAATGTATATGGTTAAGTATGAAAATAATTTTTTTCTTTTTTC
1 TTAGATTTTATTTGTAAGCCACGAATGTATATGGTTAAGTATGAAAATAATTTTTTTCTTTTTTC
53554 TTTCACTTACCT
66 TTTCACTTACCT
53566 TTA
1 TTA
53569 ACCATAATGG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.50
Consensus pattern (77 bp):
TTAGATTTTATTTGTAAGCCACGAATGTATATGGTTAAGTATGAAAATAATTTTTTTCTTTTTTC
TTTCACTTACCT
Found at i:55511 original size:13 final size:13
Alignment explanation
Indices: 55493--55518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55483 ACATAAGTTT
55493 TGTATCGATACAA
1 TGTATCGATACAA
55506 TGTATCGATACAA
1 TGTATCGATACAA
55519 AACTACCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:71450 original size:22 final size:21
Alignment explanation
Indices: 71420--71465 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
71410 CTAGATAAGT
71420 ATAAATG-TTTTCAAGGCTTAAA
1 ATAAATGTTTTTCAA-G-TTAAA
*
71442 ATAAGTGTTTTTCAAGTTAAA
1 ATAAATGTTTTTCAAGTTAAA
71463 ATA
1 ATA
71466 TATTAAAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 7 0.32
23 7 0.32
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (21 bp):
ATAAATGTTTTTCAAGTTAAA
Found at i:71686 original size:19 final size:19
Alignment explanation
Indices: 71662--71756 Score: 106
Period size: 19 Copynumber: 5.6 Consensus size: 19
71652 TAGCCAAATT
71662 TGTATCGATACACACAATA
1 TGTATCGATACACACAATA
71681 TGTATCGAT----AC-AT-
1 TGTATCGATACACACAATA
71694 TGTATCGATACACACAATA
1 TGTATCGATACACACAATA
71713 TGTATCGAT----AC-AT-
1 TGTATCGATACACACAATA
71726 TGTATCGATACACACAATA
1 TGTATCGATACACACAATA
71745 TGTATCGATACA
1 TGTATCGATACA
71757 TTGTATCGAT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.28
14 4 0.06
15 4 0.06
17 4 0.06
18 4 0.06
19 30 0.47
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (19 bp):
TGTATCGATACACACAATA
Found at i:71699 original size:13 final size:13
Alignment explanation
Indices: 71681--71770 Score: 72
Period size: 13 Copynumber: 6.0 Consensus size: 13
71671 ACACACAATA
71681 TGTATCGATACAT
1 TGTATCGATACAT
71694 TGTATCGATACACACAAT
1 TGTATCGAT----AC-AT
71712 ATGTATCGATACAT
1 -TGTATCGATACAT
71726 TGTATCGATACACACAAT
1 TGTATCGAT----AC-AT
71744 ATGTATCGATACAT
1 -TGTATCGATACAT
71758 TGTATCGATACAT
1 TGTATCGATACAT
71771 CCCAAAATGT
Statistics
Matches: 65, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 31 0.48
14 4 0.06
15 4 0.06
17 4 0.06
18 4 0.06
19 18 0.28
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:71702 original size:32 final size:32
Alignment explanation
Indices: 71661--71792 Score: 237
Period size: 32 Copynumber: 4.1 Consensus size: 32
71651 GTAGCCAAAT
71661 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAATATGTATCGATACA
71693 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAATATGTATCGATACA
71725 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAATATGTATCGATACA
* *
71757 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAATATGTATCGATACA
71790 TTG
1 TTG
71793 CTTGTAACGG
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
32 77 0.79
33 20 0.21
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAATATGTATCGATACA
Found at i:72951 original size:13 final size:13
Alignment explanation
Indices: 72933--72957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72923 TTTACAATTT
72933 GTATCGATACAAC
1 GTATCGATACAAC
72946 GTATCGATACAA
1 GTATCGATACAA
72958 AACTATTCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
GTATCGATACAAC
Found at i:76460 original size:13 final size:13
Alignment explanation
Indices: 76442--76466 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76432 ACACATAGTA
76442 TGTATCGATACAT
1 TGTATCGATACAT
76455 TGTATCGATACA
1 TGTATCGATACA
76467 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:76463 original size:32 final size:33
Alignment explanation
Indices: 76422--76489 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
76412 GTAGCTAAAC
**
76422 TTGTATCGATACA-CATAGTATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
76454 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
76487 TTG
1 TTG
76490 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:80073 original size:33 final size:33
Alignment explanation
Indices: 80036--80102 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
80026 TTCAATGATT
80036 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
80069 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
80102 T
1 T
80103 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:80074 original size:13 final size:13
Alignment explanation
Indices: 80056--80080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80046 CATAAAATGT
80056 TGTATCGATACAA
1 TGTATCGATACAA
80069 TGTATCGATACA
1 TGTATCGATACA
80081 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:80161 original size:13 final size:13
Alignment explanation
Indices: 80143--80167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80133 ATTACTCAAA
80143 TGTATCGATACAT
1 TGTATCGATACAT
80156 TGTATCGATACA
1 TGTATCGATACA
80168 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:83501 original size:21 final size:21
Alignment explanation
Indices: 83476--83518 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
83466 CATGTCAGGA
83476 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
83497 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
83518 G
1 G
83519 TCATTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (21 bp):
GCATCTCGTCATGCAATGAAT
Found at i:87471 original size:17 final size:17
Alignment explanation
Indices: 87451--87484 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
87441 AAAAAGGGAC
87451 AAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAGAAAA
* *
87468 AAAAACAAAACAGAAAA
1 AAAAAAAAAAAAGAAAA
87485 TCTCGATAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAGAAAA
Found at i:88520 original size:30 final size:31
Alignment explanation
Indices: 88483--88567 Score: 118
Period size: 30 Copynumber: 2.8 Consensus size: 31
88473 CAAATACCTT
88483 TTCAAAGTCCACGACTCAGTGGCATTTTATC
1 TTCAAAGTCCACGACTCAGTGGCATTTTATC
*
88514 -TCAAAGTCCACGACTCAGTGGCATTTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTATC
* * * *
88544 TTTAAAGCCCACAACTCCGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
88568 CTCTTTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 29 0.60
31 19 0.40
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (31 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTATC
Found at i:88709 original size:27 final size:27
Alignment explanation
Indices: 88669--88728 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
88659 ACTTTCTTTT
*
88669 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
* *
88696 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
88723 TCTTTT
1 CCTTTT
88729 CCTTTAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.38, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:88733 original size:33 final size:33
Alignment explanation
Indices: 88521--89304 Score: 794
Period size: 34 Copynumber: 23.7 Consensus size: 33
88511 ATCTCAAAGT
* * * *
88521 CCACGACTCAGTGGCA-T-TTTTTCTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
*
88552 CCACAACTCCGTGGCACTC--TT--TTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
*
88581 CCACAACTCCGTGGCAC-CTTCTT-CTTTCCAAAGC
1 CCACAACTCCGTGGCACTCTT-TTCCTTT--TAAGC
*
88615 CCACAACTCCGTGGCACTC--TT--TTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
* *
88644 CCACAACTCCATGGCACTTTCTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCAC--TCTTTTCCTTTTAAGC
*
88679 CCACAACTCCGTGGCA--C----CCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
* *
88706 CCACGACTCCGTGGCACTCTTTTCCTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
* *
88739 CCACAACTACGTGGCACTCTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
*
88772 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTTAAGC
*
88806 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTTAAGC
*
88840 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTTAAGC
* * *
88874 CCACAACTCTGTGGCACACTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTT-AAGC
*
88909 CCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGC
1 CCACAACTCCGTGGCACTC-TTTT-CCTTTT--AAGC
*
88946 CCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTT-AAGC
88980 CCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGC
1 CCACAACTCCGTGGCACTC-TTTT-CC-TTTT-AAGC
* *
89017 CCACAACTCCATGGCACTTTCTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCAC--TCTTTTCCTTTTAAGC
*
89052 CCACAACTCCGTGGCA--C----CCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
* *
89079 CCACGACTCCGTGGCACTCTTTTCCTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
* *
89112 CCACAACTACGTGGCACTCTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
*
89145 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTTAAGC
*
89179 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-TTTTCCTTTTAAGC
89213 CCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAGC
1 CCACAACTCCGTGGCACTC---TTTTCC-TTTT-AAGC
* * *
89251 CCACAACTCTGTGGCAC-CTTGTTCTTTTTAAGT
1 CCACAACTCCGTGGCACTCTT-TTCCTTTTAAGC
*
89284 CCACAACTTCGTGGCA-TCTTT
1 CCACAACTCCGTGGCACTCTTT
89305 CACCCTTCCT
Statistics
Matches: 666, Mismatches: 44, Indels: 85
0.84 0.06 0.11
Matches are distributed among these distances:
27 46 0.07
28 1 0.00
29 48 0.07
31 25 0.04
32 7 0.01
33 132 0.20
34 225 0.34
35 82 0.12
36 22 0.03
37 52 0.08
38 24 0.04
39 2 0.00
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (33 bp):
CCACAACTCCGTGGCACTCTTTTCCTTTTAAGC
Found at i:89082 original size:27 final size:27
Alignment explanation
Indices: 89042--89101 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
89032 ACTTTCTTTT
*
89042 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
* *
89069 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
89096 TCTTTT
1 CCTTTT
89102 CCTTTAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.38, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:89352 original size:33 final size:35
Alignment explanation
Indices: 89309--89378 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
89299 ATCTTTCACC
89309 CTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
89343 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
89377 CT
1 CT
89379 AAGCCCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (35 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:89354 original size:373 final size:371
Alignment explanation
Indices: 88576--89357 Score: 1252
Period size: 373 Copynumber: 2.1 Consensus size: 371
88566 CACTCTTTTT
88576 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTCCAAAGCCCACAACTCCGTGGCA--C----T--
1 AAAGCCCACAACTCCGTGGCACC-T-TTCTTTCCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
88633 CTTTTTAAAGCCCACAACTCCATGGCACTTTCTTTTCCTTCTAAGCCCACAACTCCGTGGCACCC
64 CTTTTTAAAGCCCACAACTCCATGGCACTTTCTTTTCCTTCTAAGCCCACAACTCCGTGGCACCC
88698 TTTTAAGTCCACGACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTACGTGGCACTCTTTTC
129 TTTTAAGTCCACGACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTACGTGGCACTCTTTTC
88763 CTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTT
194 CTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTT
88828 TTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCTGTGGCACAC
259 TTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCTGTGGCACAC
* ** *
88893 TTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTC
324 TTGTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTCACCCTTCTC
**
88941 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAAGCCCACAACTCCGTGGCACC--TTTCTTTCCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
89006 CTTTTTAAAGCCCACAACTCCATGGCACTTTCTTTTCCTTCTAAGCCCACAACTCCGTGGCACCC
64 CTTTTTAAAGCCCACAACTCCATGGCACTTTCTTTTCCTTCTAAGCCCACAACTCCGTGGCACCC
89071 TTTTAAGTCCACGACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTACGTGGCACTCTTTTC
129 TTTTAAGTCCACGACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTACGTGGCACTCTTTTC
89136 CTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTT
194 CTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTT
*
89201 TTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGC
259 TTCCTTCTAAGCCCACAACTCCGTGGCACTC--TTTTTCC-TTCT-AAGCCCACAACTCTGTGGC
*
89266 AC-CTTGTTCTTTTT-AAGTCCACAACT-TCGTGGCA-TCTTTCACCCTTC-C
320 ACACTTGTTCTTTTTAAAGCCCACAACTCT-GTGGCACTCTTTCACCCTTCTC
* *
89314 TAAAGCCCACACAAGTCGGTGGCAACC-TTC-TTCCAAAGCCCACA
1 -AAAG-CC-CACAACTCCGTGGC-ACCTTTCTTTCCAAAGCCCACA
89358 CAAGTCGGTG
Statistics
Matches: 387, Mismatches: 12, Indels: 28
0.91 0.03 0.07
Matches are distributed among these distances:
365 50 0.13
366 2 0.01
367 1 0.00
371 1 0.00
373 239 0.62
374 18 0.05
375 26 0.07
376 26 0.07
377 24 0.06
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.31
Consensus pattern (371 bp):
AAAGCCCACAACTCCGTGGCACCTTTCTTTCCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
TTTTAAAGCCCACAACTCCATGGCACTTTCTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTT
TTAAGTCCACGACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTACGTGGCACTCTTTTCCT
TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCTGTGGCACACTT
GTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTCACCCTTCTC
Found at i:89440 original size:49 final size:49
Alignment explanation
Indices: 89378--90153 Score: 913
Period size: 49 Copynumber: 15.9 Consensus size: 49
89368 GCAACCCTTC
* * *
89378 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
89427 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTTCATCTT
* * * * *
89476 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
89525 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTTCATCTT
* * * * * *
89574 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
*
89623 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-TCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACT-TTCATCTT
* * * *
89672 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
*
89721 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-TCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACT-TTCATCTT
* * * *
89770 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
*
89819 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-TCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACT-TTCATCTT
* * *
89868 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
*
89911 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-TCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACT-TTCATCTT
* *
89960 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
90003 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--TTT-CATCTT
* * ** *
90055 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--C---TT-TCATCTT
* * * * *
90110 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTT
90154 ATCACTTTTC
Statistics
Matches: 623, Mismatches: 76, Indels: 55
0.83 0.10 0.07
Matches are distributed among these distances:
43 78 0.13
45 2 0.00
47 1 0.00
48 6 0.01
49 447 0.72
50 9 0.01
51 2 0.00
52 37 0.06
54 2 0.00
55 38 0.06
56 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
Found at i:89552 original size:98 final size:98
Alignment explanation
Indices: 89378--90152 Score: 1142
Period size: 98 Copynumber: 7.9 Consensus size: 98
89368 GCAACCCTTC
* * * * * * *
89378 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
* *
89443 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
*
89476 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
* *
89541 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
*
89574 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
89639 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
66 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
*
89672 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
89737 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
66 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
*
89770 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
89835 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
66 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
89868 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG------CACCTTTAAGTCCAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
89927 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
66 GGCCTTGAATCAGCATATTGGCATCTTCATCTT
* *
89960 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG------CACCTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
*
90019 GGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
66 GGCCTTGAATCAGCATATTGG--CATCTT-CATCTT
* * * * * *
90055 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAAT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCACCTTTAAGTCCAAT
* * *
90120 ATCGTTGGCCATGAATCAACATATTGGCATCTT
60 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
90153 TATCACTTTT
Statistics
Matches: 636, Mismatches: 26, Indels: 23
0.93 0.04 0.03
Matches are distributed among these distances:
92 132 0.21
94 5 0.01
95 40 0.06
98 417 0.66
105 5 0.01
107 37 0.06
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCT
GGCCTTGAATCAGCATATTGGCATCTTCATCTT
Found at i:89936 original size:92 final size:92
Alignment explanation
Indices: 89816--90086 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
89806 GCACCTTCAT
89816 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
89881 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
89908 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
89973 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
90000 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
90065 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
90087 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:90070 original size:52 final size:54
Alignment explanation
Indices: 90000--90388 Score: 243
Period size: 55 Copynumber: 6.8 Consensus size: 54
89990 ACATTGGCAC
90000 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
90052 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
90107 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA--TTT-TC-TCAT
* *
90171 CATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 C---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
90223 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * * *
90278 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA---TT-T--TC-TC
90343 AT
53 AT
*
90345 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
90389 TTCATCATCT
Statistics
Matches: 256, Mismatches: 48, Indels: 57
0.71 0.13 0.16
Matches are distributed among these distances:
49 33 0.13
52 42 0.16
53 1 0.00
54 9 0.04
55 75 0.29
58 2 0.01
60 2 0.01
61 1 0.00
62 3 0.01
63 4 0.02
64 6 0.02
66 3 0.01
67 75 0.29
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
Found at i:90135 original size:55 final size:55
Alignment explanation
Indices: 90000--90383 Score: 273
Period size: 67 Copynumber: 6.7 Consensus size: 55
89990 ACATTGGCAC
* *
90000 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
90052 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
90107 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
90171 CATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
90223 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
90278 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
90343 AT
54 AT
*
90345 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
90384 GCACCTTCAT
Statistics
Matches: 257, Mismatches: 42, Indels: 52
0.73 0.12 0.15
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
52 42 0.16
54 8 0.03
55 64 0.25
56 2 0.01
57 2 0.01
58 2 0.01
59 1 0.00
61 8 0.03
62 6 0.02
63 5 0.02
64 7 0.03
66 4 0.02
67 69 0.27
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:90290 original size:171 final size:171
Alignment explanation
Indices: 90000--90394 Score: 700
Period size: 171 Copynumber: 2.3 Consensus size: 171
89990 ACATTGGCAC
*
90000 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
90065 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
90130 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
90174 TTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
*
90239 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
*
90304 AATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
131 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
90345 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
90395 ATCTCTAAAA
Statistics
Matches: 213, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
171 170 0.80
172 5 0.02
174 38 0.18
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
Found at i:91230 original size:33 final size:33
Alignment explanation
Indices: 91193--91259 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
91183 TTCAATGATT
91193 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
91226 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
91259 T
1 T
91260 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:91231 original size:13 final size:13
Alignment explanation
Indices: 91213--91237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91203 CATAAAATGT
91213 TGTATCGATACAA
1 TGTATCGATACAA
91226 TGTATCGATACA
1 TGTATCGATACA
91238 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:91318 original size:13 final size:13
Alignment explanation
Indices: 91300--91324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91290 ATTACTCAAA
91300 TGTATCGATACAT
1 TGTATCGATACAT
91313 TGTATCGATACA
1 TGTATCGATACA
91325 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:97413 original size:13 final size:13
Alignment explanation
Indices: 97395--97420 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97385 ACATCATTCT
97395 TTGTATCGATACA
1 TTGTATCGATACA
97408 TTGTATCGATACA
1 TTGTATCGATACA
97421 GGGGGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:97587 original size:20 final size:20
Alignment explanation
Indices: 97552--97592 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
97542 CAAAATTCTT
97552 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
97574 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
97593 TTCAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:99904 original size:13 final size:13
Alignment explanation
Indices: 99886--99910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99876 ACACATAGTA
99886 TGTATCGATACAT
1 TGTATCGATACAT
99899 TGTATCGATACA
1 TGTATCGATACA
99911 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:99927 original size:33 final size:32
Alignment explanation
Indices: 99866--99933 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
99856 GTAGCTAAAC
* **
99866 TTGTATTGATACACATAGTATGTATCGATACA
1 TTGTATCGATACACATAAAATGTATCGATACA
99898 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACA-CATAAAATGTATCGATACA
99931 TTG
1 TTG
99934 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACACATAAAATGTATCGATACA
Found at i:106277 original size:20 final size:21
Alignment explanation
Indices: 106235--106281 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
106225 TTTAGCAATT
*
106235 TGTATCCATACAATAAGGTAA
1 TGTATCAATACAATAAGGTAA
106256 TGTATCAATAC-ATAA-GTGAA
1 TGTATCAATACAATAAGGT-AA
106276 TGTATC
1 TGTATC
106282 GATATATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 2 0.08
20 12 0.50
21 10 0.42
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (21 bp):
TGTATCAATACAATAAGGTAA
Found at i:106409 original size:51 final size:52
Alignment explanation
Indices: 106344--106462 Score: 152
Period size: 51 Copynumber: 2.3 Consensus size: 52
106334 TCTAGAAAGA
* * * *
106344 AAATGTATCGATACATT-TTTCTTTGTATTGATACATTCAAGG-TTTTGACCC
1 AAATGTATCGATACATTCTTT-ATTATATCGATACATTCAAGGTTTTTAACCC
* * *
106395 AATTTTATCGATACATTCTTTATTATATCGATACATTCTAGGTTTTTAACCC
1 AAATGTATCGATACATTCTTTATTATATCGATACATTCAAGGTTTTTAACCC
106447 AAATGTATCGATACAT
1 AAATGTATCGATACAT
106463 CTAGTTAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
51 32 0.56
52 25 0.44
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (52 bp):
AAATGTATCGATACATTCTTTATTATATCGATACATTCAAGGTTTTTAACCC
Found at i:106814 original size:11 final size:11
Alignment explanation
Indices: 106798--106822 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
106788 GAAGGAAATG
106798 ACCAAAACACC
1 ACCAAAACACC
106809 ACCAAAACACC
1 ACCAAAACACC
106820 ACC
1 ACC
106823 CTTTTTGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (11 bp):
ACCAAAACACC
Found at i:110355 original size:13 final size:13
Alignment explanation
Indices: 110337--110362 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110327 CATTTTGGGA
110337 TGTATCGATACAT
1 TGTATCGATACAT
110350 TGTATCGATACAT
1 TGTATCGATACAT
110363 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:110519 original size:20 final size:19
Alignment explanation
Indices: 110476--110538 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
110466 ATCAATACAT
* **
110476 TGTATCGATACTGTGCAATA
1 TGTATCGATACTTTG-AAGG
110496 TGTATCGATACATTTGAAGG
1 TGTATCGATAC-TTTGAAGG
*
110516 TGTATCGATACTTTTAAGG
1 TGTATCGATACTTTGAAGG
110535 -GTAT
1 TGTAT
110539 TGACCTTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 4 0.11
19 7 0.18
20 24 0.63
21 3 0.08
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (19 bp):
TGTATCGATACTTTGAAGG
Found at i:112708 original size:20 final size:21
Alignment explanation
Indices: 112678--112719 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
112668 CTATTTTTGT
112678 TGATGATTTTG-A-TGAAAAA
1 TGATGATTTTGAAGTGAAAAA
112697 TGATGTATTTTGAAGTGAAAAA
1 TGATG-ATTTTGAAGTGAAAAA
112719 T
1 T
112720 AAGAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 6 0.30
21 1 0.05
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (21 bp):
TGATGATTTTGAAGTGAAAAA
Found at i:114611 original size:13 final size:13
Alignment explanation
Indices: 114593--114617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114583 CATAAAATGT
114593 TGTATCGATACAA
1 TGTATCGATACAA
114606 TGTATCGATACA
1 TGTATCGATACA
114618 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:114615 original size:33 final size:33
Alignment explanation
Indices: 114573--114642 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
114563 TTCAACGAGT
114573 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
114606 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
114639 TGTA
1 TGTA
114643 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:114700 original size:13 final size:13
Alignment explanation
Indices: 114682--114706 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114672 ATTACTCACA
114682 TGTATCGATACAT
1 TGTATCGATACAT
114695 TGTATCGATACA
1 TGTATCGATACA
114707 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:114771 original size:52 final size:52
Alignment explanation
Indices: 114715--114839 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
114705 CACTGATCTT
*
114715 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
114767 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
114819 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
114840 CTTTTCATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:122627 original size:13 final size:13
Alignment explanation
Indices: 122609--122634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
122599 CATTTTGGGA
122609 TGTATCGATACAT
1 TGTATCGATACAT
122622 TGTATCGATACAT
1 TGTATCGATACAT
122635 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:122631 original size:33 final size:32
Alignment explanation
Indices: 122589--122652 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
122579 TACAAGCCAA
*
122589 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
122622 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
122653 AATAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:125958 original size:20 final size:20
Alignment explanation
Indices: 125933--125985 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
125923 ATATAAGTTT
*
125933 TGTATCGATATATTATACAA
1 TGTATCGATACATTATACAA
*
125953 TGTATCGATACATTATTCAA
1 TGTATCGATACATTATACAA
*
125973 TGTATAGATACAT
1 TGTATCGATACAT
125986 GCAGGTAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTATACAA
Found at i:140129 original size:9 final size:9
Alignment explanation
Indices: 140081--140129 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
140071 TGTCTTCTAC
*
140081 AAAAAAACA
1 AAAAAAATA
* *
140090 AAGAAAACA
1 AAAAAAATA
140099 AAAAAAAT-
1 AAAAAAATA
140107 -AAAAAAT-
1 AAAAAAATA
140114 AAAAAAATA
1 AAAAAAATA
140123 AAAAAAA
1 AAAAAAA
140130 ACACAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 7 0.20
8 7 0.20
9 21 0.60
ACGTcount: A:0.88, C:0.04, G:0.02, T:0.06
Consensus pattern (9 bp):
AAAAAAATA
Found at i:140139 original size:9 final size:8
Alignment explanation
Indices: 140079--140128 Score: 57
Period size: 8 Copynumber: 6.1 Consensus size: 8
140069 GGTGTCTTCT
140079 ACAAAAAA
1 ACAAAAAA
140087 ACAAAGAAA
1 ACAAA-AAA
140096 ACAAAAAA
1 ACAAAAAA
140104 A-ATAAAAA
1 ACA-AAAAA
*
140112 ATAAAAAA
1 ACAAAAAA
*
140120 ATAAAAAA
1 ACAAAAAA
140128 A
1 A
140129 AACACAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
7 1 0.03
8 29 0.74
9 9 0.23
ACGTcount: A:0.86, C:0.06, G:0.02, T:0.06
Consensus pattern (8 bp):
ACAAAAAA
Found at i:140152 original size:20 final size:20
Alignment explanation
Indices: 140081--140141 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
140071 TGTCTTCTAC
* *
140081 AAAAAAACAAAGAAAACAAAAA
1 AAAAAAACACA-AAAA-AATAA
* *
140103 AAATAAAAAATAAAAAAATAA
1 AAA-AAAACACAAAAAAATAA
140124 AAAAAAACACAAAAAAAT
1 AAAAAAACACAAAAAAAT
140142 GACAACAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 13 0.39
21 7 0.21
22 7 0.21
23 6 0.18
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.07
Consensus pattern (20 bp):
AAAAAAACACAAAAAAATAA
Found at i:141366 original size:14 final size:14
Alignment explanation
Indices: 141343--141385 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
141333 ATTGTCAATA
*
141343 AAATTGTTGTCAAG
1 AAATTTTTGTCAAG
141357 AAATTTTTGTCAAG
1 AAATTTTTGTCAAG
*
141371 -AACTTTTGTCAAG
1 AAATTTTTGTCAAG
141384 AA
1 AA
141386 CATGTGTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (14 bp):
AAATTTTTGTCAAG
Found at i:141379 original size:13 final size:13
Alignment explanation
Indices: 141349--141421 Score: 67
Period size: 13 Copynumber: 5.5 Consensus size: 13
141339 AATAAAATTG
*
141349 TTGTCAAGAAATTT
1 TTGTCAAG-AACTT
141363 TTGTCAAGAACTT
1 TTGTCAAGAACTT
*
141376 TTGTCAAGAACAT
1 TTGTCAAGAACTT
* *
141389 GTGTCAAAAAC-T
1 TTGTCAAGAACTT
* *
141401 TCGTCAAGAAATGT
1 TTGTCAAGAACT-T
141415 TTGTCAA
1 TTGTCAA
141422 CACGAATCCC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
12 8 0.17
13 25 0.52
14 15 0.31
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (13 bp):
TTGTCAAGAACTT
Found at i:141400 original size:26 final size:24
Alignment explanation
Indices: 141364--141414 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
141354 AAGAAATTTT
* *
141364 TGTCAAGAACTTTTGTCAAGAACATG
1 TGTCAAAAAC-TTCGTCAAGAA-ATG
141390 TGTCAAAAACTTCGTCAAGAAATG
1 TGTCAAAAACTTCGTCAAGAAATG
141414 T
1 T
141415 TTGTCAACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 10 0.43
26 9 0.39
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (24 bp):
TGTCAAAAACTTCGTCAAGAAATG
Found at i:141491 original size:28 final size:27
Alignment explanation
Indices: 141451--141513 Score: 90
Period size: 28 Copynumber: 2.3 Consensus size: 27
141441 CCCACTAGTC
* *
141451 AGTGGCACCTCTTCGAAGTCCATAAGTT
1 AGTGGCACCTCTTCAAAGTCCACAA-TT
*
141479 AGTGGCATCTCTTCAAAGTCCACAATT
1 AGTGGCACCTCTTCAAAGTCCACAATT
141506 AGTGGCAC
1 AGTGGCAC
141514 TTACTTTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 9 0.29
28 22 0.71
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (27 bp):
AGTGGCACCTCTTCAAAGTCCACAATT
Found at i:141729 original size:32 final size:31
Alignment explanation
Indices: 141684--141823 Score: 154
Period size: 32 Copynumber: 4.4 Consensus size: 31
141674 CCCAATTGAG
*
141684 AACCCTTTCTAAAGCCCACACAAGCTGGTTGC
1 AACCCTTT-TAAAGCCCACACAAGTTGGTTGC
*
141716 AACCCTCTTTAAAGCCCACACAAGTTGGTTAC
1 AACCCT-TTTAAAGCCCACACAAGTTGGTTGC
* * * *
141748 AACCCTTCTTAAAGCCCATACAAGTCGGTGGT
1 AACCCTT-TTAAAGCCCACACAAGTTGGTTGC
* *
141780 AACCCTTTTAAAAGCCTACACAAGTTGGTGGC
1 AACCCTTTT-AAAGCCCACACAAGTTGGTTGC
*
141812 ATCTCCTTTTAA
1 AAC-CCTTTTAA
141824 GTCTAATGTC
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
31 3 0.03
32 81 0.88
33 8 0.09
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (31 bp):
AACCCTTTTAAAGCCCACACAAGTTGGTTGC
Found at i:142793 original size:19 final size:19
Alignment explanation
Indices: 142768--142822 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
142758 ATTTTTACAA
142768 ATTGTATCGATACATAAGTT
1 ATTGTATCGATACATAA-TT
* *
142788 -TTGTATTGATACATTTATT
1 ATTGTATCGATACA-TAATT
142807 ATTGTATCGATACATA
1 ATTGTATCGATACATA
142823 TGGATATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (19 bp):
ATTGTATCGATACATAATT
Found at i:143826 original size:507 final size:508
Alignment explanation
Indices: 142872--143871 Score: 1585
Period size: 507 Copynumber: 2.0 Consensus size: 508
142862 TATCCATACG
** *
142872 TTATTCAACGTATAGATACATGCAGGCAAATTTCCACACTTCGTGACATTTTCAGCCTTTGCTTC
1 TTATTCAACGTATAGATACATGCAAACAAATTTACACACTTCGTGACATTTTCAGCCTTTGCTTC
* *
142937 TTTGGACCCGATGCTTGGTTTGAACACGTTTTCTCACTCCATAAGCTATCAGGATTCATGCCAGA
66 TTTGGACCCAATGCCTGGTTTGAACACGTTTTCTCACTCCATAAGCTATCAGGATTCATGCCAGA
*
143002 CATCACAGCTTAGATTCCTAATCAGATCTGAACCAAATACAATGTCTAAATCATGGATTGAATGG
131 CATCACAGCTTAGACTCCTAATCAGATCTGAACCAAATACAATGTCTAAATCATGGATTGAATGG
* *
143067 TCATATTTTCAGTATTGCATTTTCTCCATTATTACACTGAAGGTCTGATACACATTAACTTCACC
196 TCATATTTTCAGTATTGCATTTTCTCCATTATCACACTCAAGGTCTGATACACATTAACTTCACC
* * * * *
143132 CCACCAACCTTCTACTGAGCATTAAACTTAGCCCCCTGATCTGCTGAAATGCAGCATGGCTGCCA
261 CCACCAACCTTCTACTGAGCATTAAACTCAGCCCCCTGATCTGCTAAAATGCAGCATGACTACAA
** * * *
143197 GCAGCTTTTTCCTGCAATGGGTGGAAGGAAATGACCAAAATACCACCCTTTTTGGCTCCAAACTT
326 GCAGCTTTTTCCTGCAATGGGTAAAAAGAAATAACCAAAATACCACCATTTTTGGCTCCAAACTT
* *
143262 TGGCTATAAATAAACCAATCCATTTTCAGCTTTAGTTTCTAATTTTTCAGCCACATTTTCATTTA
391 TGGCTATAAATAAACCAATCCATTTTCAGCTTTACTTTCTAATTTTTCAGCCACATTTTCATCTA
* * *
143327 CATTTCCAGTAACACTTCTAGCAGTATCTTAGCCAAAAACACCAACAAAAAAA
456 CATTTCCAGCAACACTTCGAGCAGCATCTTAGCCAAAAACACCAACAAAAAAA
* * * * *
143380 TTATTCAATGTATCGATGCATGCAAATAAATTTACACACTTCGTGACATTTTCAGCTTTTGCTTC
1 TTATTCAACGTATAGATACATGCAAACAAATTTACACACTTCGTGACATTTTCAGCCTTTGCTTC
*
143445 TTTGGACCCAATGCCTGGTTTGAACACGTTTTTTCACTCCATAAGCTATCA-GATTCATGCCAGA
66 TTTGGACCCAATGCCTGGTTTGAACACGTTTTCTCACTCCATAAGCTATCAGGATTCATGCCAGA
143509 CATCACAGCTTAGACTCCTAATCAGATCTGAACCAAATACAATGTCTAAATCATGGATTGAATGG
131 CATCACAGCTTAGACTCCTAATCAGATCTGAACCAAATACAATGTCTAAATCATGGATTGAATGG
* *
143574 TCACT-TTTTCA-TCATTGCATTTTCTCCATTATCACACTCAAGGTCTGATTCACATTAA-TTTA
196 TCA-TATTTTCAGT-ATTGCATTTTCTCCATTATCACACTCAAGGTCTGATACACATTAACTTCA
** *
143636 GCCCCACCAACCTTCTGTTGAGCATTAAACTCAGCCCCCTGATCTTCTAAAATGCAGCATGACTA
259 -CCCCACCAACCTTCTACTGAGCATTAAACTCAGCCCCCTGATCTGCTAAAATGCAGCATGACTA
* * *
143701 CAAGTAGCTTTTTCTTGCAATGGGTAAAAAGAAATAACCAAAATACCACTATTTTTGGCTCCAAA
323 CAAGCAGCTTTTTCCTGCAATGGGTAAAAAGAAATAACCAAAATACCACCATTTTTGGCTCCAAA
* **
143766 CTTTGGCTATAAATAAACCAATCCATTTTCAGCTTTACTTTTTGGTTTTTCAGCCACATTTTCAT
388 CTTTGGCTATAAATAAACCAATCCATTTTCAGCTTTACTTTCTAATTTTTCAGCCACATTTTCAT
143831 CTACATTTCCAGCAACACTTCGAGCAGCATCTTAGCCAAAA
453 CTACATTTCCAGCAACACTTCGAGCAGCATCTTAGCCAAAA
143872 CACAATAAAA
Statistics
Matches: 449, Mismatches: 40, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
506 4 0.01
507 339 0.76
508 106 0.24
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (508 bp):
TTATTCAACGTATAGATACATGCAAACAAATTTACACACTTCGTGACATTTTCAGCCTTTGCTTC
TTTGGACCCAATGCCTGGTTTGAACACGTTTTCTCACTCCATAAGCTATCAGGATTCATGCCAGA
CATCACAGCTTAGACTCCTAATCAGATCTGAACCAAATACAATGTCTAAATCATGGATTGAATGG
TCATATTTTCAGTATTGCATTTTCTCCATTATCACACTCAAGGTCTGATACACATTAACTTCACC
CCACCAACCTTCTACTGAGCATTAAACTCAGCCCCCTGATCTGCTAAAATGCAGCATGACTACAA
GCAGCTTTTTCCTGCAATGGGTAAAAAGAAATAACCAAAATACCACCATTTTTGGCTCCAAACTT
TGGCTATAAATAAACCAATCCATTTTCAGCTTTACTTTCTAATTTTTCAGCCACATTTTCATCTA
CATTTCCAGCAACACTTCGAGCAGCATCTTAGCCAAAAACACCAACAAAAAAA
Found at i:147421 original size:33 final size:33
Alignment explanation
Indices: 147384--147450 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
147374 TTCAATGATT
147384 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
147417 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
147450 T
1 T
147451 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:147422 original size:13 final size:13
Alignment explanation
Indices: 147404--147428 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147394 CATAAAATGT
147404 TGTATCGATACAA
1 TGTATCGATACAA
147417 TGTATCGATACA
1 TGTATCGATACA
147429 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:147509 original size:13 final size:13
Alignment explanation
Indices: 147491--147515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147481 ATTACTCAAA
147491 TGTATCGATACAT
1 TGTATCGATACAT
147504 TGTATCGATACA
1 TGTATCGATACA
147516 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:147580 original size:52 final size:52
Alignment explanation
Indices: 147524--147643 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
147514 CACTGATCTT
* *
147524 TGTATCGATACATGCAGGCAATTTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
147576 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
147628 TGTATCGATACATGCA
1 TGTATCGATACATGCA
147644 AACAACTTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:154922 original size:11 final size:12
Alignment explanation
Indices: 154894--154924 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
154884 ACCTACTCTT
154894 CAAAAAAAAAAA
1 CAAAAAAAAAAA
154906 CAAAAAAAAAAA
1 CAAAAAAAAAAA
*
154918 GAAAAAA
1 CAAAAAA
154925 CCCCTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.90, C:0.06, G:0.03, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:155882 original size:9 final size:9
Alignment explanation
Indices: 155868--155892 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
155858 ACCTTTTTTT
155868 AAAAAAATA
1 AAAAAAATA
155877 AAAAAAATA
1 AAAAAAATA
155886 AAAAAAA
1 AAAAAAA
155893 AGTCAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAATA
Found at i:155937 original size:31 final size:31
Alignment explanation
Indices: 155901--156045 Score: 181
Period size: 31 Copynumber: 4.7 Consensus size: 31
155891 AAAGTCAAAA
155901 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
155932 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
155963 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
155992 TTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 ---AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
* *
156025 AAAGTCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
156046 CCTTCTTCTT
Statistics
Matches: 101, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
29 5 0.05
30 21 0.21
31 49 0.49
32 22 0.22
33 4 0.04
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:156026 original size:62 final size:62
Alignment explanation
Indices: 155901--156083 Score: 198
Period size: 62 Copynumber: 2.9 Consensus size: 62
155891 AAAGTCAAAA
155901 AAAGTCCACGACTCAGTGGCAATCTCTTCTC---AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGC-ATC-CTTCTCTTTAAAGTCCACGACTCAGTGGC-ATCTCTGCTC
* *
155963 AAAGTCCACGACGCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCAT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCATCTCTG-CTC
* * * * *
156025 AAAGTCCACAACTCCGTGGCA-CCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCA-CTCT
1 AAAGTCCACGACTCAGTGGCATCCTTC-TC--TTTAAAGTCCACGACTCAGTGGCATCTCT
156084 TTCTTCTTTT
Statistics
Matches: 104, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
60 6 0.06
61 11 0.11
62 44 0.42
63 20 0.19
64 23 0.22
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCATCTCTGCTC
Found at i:156099 original size:36 final size:35
Alignment explanation
Indices: 156023--156492 Score: 620
Period size: 36 Copynumber: 13.3 Consensus size: 35
156013 GCATTTTGTC
* *
156023 TCAAAGTCCACAACTCCGTGGCAC-CTTCTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT
*
156057 TTAAAGCCCACAACTCCGTGGCACTCTTTCTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTT
*
156093 TCAAAGCCCACAACTTCGTGGCACTCTTTCTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTT
*
156129 TCAAAGCCCACAACTCCGTGGCAC-CTTCTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT
*
156163 TTAAAGCCCACAACTCCGTGGCACTCTTTCTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTT
*
156199 TCAAAGCCCACAACTTCGTGGCACTCTTTCTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTT
156235 TCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTGTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCT-TT
156270 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTT
* *
156306 TTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCGTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTT-CTTT
156341 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTT
*
156377 TCAAAGCCCACAACTCTGTGGCACT-TTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT
156411 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTT
* *
156447 T--AAGTCCACAACTCCGTGGCA-TCTTTTTTCCTTC
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTT-CTTT
*
156481 CCAAAGCCCACA
1 TCAAAGCCCACA
156493 CAAGTCGGTG
Statistics
Matches: 398, Mismatches: 20, Indels: 34
0.88 0.04 0.08
Matches are distributed among these distances:
33 22 0.06
34 115 0.29
35 57 0.14
36 158 0.40
37 46 0.12
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (35 bp):
TCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT
Found at i:156113 original size:70 final size:70
Alignment explanation
Indices: 156023--156467 Score: 607
Period size: 70 Copynumber: 6.3 Consensus size: 70
156013 GCATTTTGTC
*
156023 TCAAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT-T
156088 T-CTTT
65 TCCTTT
* * *
156093 TCAAAGCCCACAACTTCGTGGCACTCTTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTC
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
156157 TT-CTTT
64 TTCCTTT
* * *
156163 TTAAAGCCCACAACTCCGTGGCACTCTTTCTTCTTTTCAAAGCCCACAACTTCGTGGCACTCTTT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
156228 CTT-CTTT
64 -TTCCTTT
* *
156235 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
156300 CCCTTT
66 -CCTTT
* * **
156306 TTAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
156371 CCCTTT
66 -CCTTT
* * *
156377 TCAAAGCCCACAACTCTGTGGCACTTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
156441 CCCTTT
66 -CCTTT
*
156447 T--AAGTCCACAACTCCGTGGCA
1 TCAAAGCCCACAACTCCGTGGCA
156468 TCTTTTTTCC
Statistics
Matches: 348, Mismatches: 21, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
68 18 0.05
69 2 0.01
70 158 0.45
71 109 0.31
72 61 0.18
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (70 bp):
TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
CCTTT
Found at i:156208 original size:106 final size:105
Alignment explanation
Indices: 156023--156467 Score: 645
Period size: 106 Copynumber: 4.2 Consensus size: 105
156013 GCATTTTGTC
*
156023 TCAAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT-T
*
156088 TCTTTTCAAAGCCCACAACTTCGTGGCACTCTTTCTT-CTTT
65 TCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT-TTCCTTT
156129 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT-T
*
156194 TCTTTTCAAAGCCCACAACTTCGTGGCACTCTTTCTT-CTTT
65 TCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT-TTCCTTT
* *
156235 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
* *
156300 CCCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCGTT
66 --CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
* * *
156341 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACT-TT
1 TCAAAGCCCACAACTCCGTGGCAC-CTTCTT--CTTTTTAAAGCCCACAACTCCGTGGCACTCTT
156404 TTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
63 TTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTT
*
156447 T--AAGTCCACAACTCCGTGGCA
1 TCAAAGCCCACAACTCCGTGGCA
156468 TCTTTTTTCC
Statistics
Matches: 320, Mismatches: 11, Indels: 17
0.92 0.03 0.05
Matches are distributed among these distances:
104 22 0.07
105 56 0.17
106 185 0.58
107 31 0.10
108 26 0.08
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (105 bp):
TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
Found at i:156519 original size:32 final size:32
Alignment explanation
Indices: 156481--156572 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 32
156471 TTTTTCCTTC
156481 CCAAAGCCCACACAAGTCGGTGGCAAC-TCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
156512 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAA-CTTCTT
156546 CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCAAAGCCCACACAAGTCGGTGGCAAC
156573 CCCTCTCAGC
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
31 2 0.03
32 25 0.43
33 25 0.43
34 6 0.10
ACGTcount: A:0.29, C:0.36, G:0.20, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
Found at i:156557 original size:33 final size:32
Alignment explanation
Indices: 156481--156573 Score: 161
Period size: 33 Copynumber: 2.9 Consensus size: 32
156471 TTTTTCCTTC
156481 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
156512 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
156546 CCAAAGCCCACACAAGTCGGTGGCAACC
1 CCAAAGCCCACACAAGTCGGTGGCAACC
156574 CCTCTCAGCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 24 0.41
33 27 0.46
34 6 0.10
ACGTcount: A:0.29, C:0.37, G:0.19, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:156729 original size:49 final size:49
Alignment explanation
Indices: 156603--157327 Score: 988
Period size: 49 Copynumber: 15.0 Consensus size: 49
156593 TGGCCTTTTC
* *
156603 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * * *
156652 CATCTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTC
1 CATC-TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* *
156702 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * *
156751 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * *
156800 CATCCTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * * *
156849 CATCTTTAAGTCCAATATCGCTGGCCATGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* *
156898 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * *
156947 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* *
156996 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * *
157045 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
*
157094 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * *
157139 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
157186 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
* * *
157231 C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG--CATCTT
* * *
157280 CCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATC
1 -CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
157328 CTTTTTCTCA
Statistics
Matches: 590, Mismatches: 70, Indels: 31
0.85 0.10 0.04
Matches are distributed among these distances:
43 76 0.13
45 4 0.01
47 1 0.00
49 427 0.72
50 47 0.08
52 35 0.06
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
Found at i:156818 original size:98 final size:98
Alignment explanation
Indices: 156603--157384 Score: 1264
Period size: 98 Copynumber: 8.0 Consensus size: 98
156593 TGGCCTTTTC
156603 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTTAAGTCCAA
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC-TTTAAGTCCAA
*
156668 TATCGCTGGCCTTGAATCAGCATATTGGCATCTC
65 TATCGCTGGCCTTGAATCAGCATATTGGCATCTT
156702 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
156767 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
*
156800 CATCCTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
156865 ATCGCTGGCCATGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
156898 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
156963 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
156996 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
157061 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
157094 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
157153 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
*
157186 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
* *
157245 ATAGCTGGCCTTGAATCAGCATATTGGCACATTTT
66 ATCGCTGGCCTTGAATCAGCATATTGG--CATCTT
* * * *
157280 CCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAA
1 -CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCATCTTTAA
* * * *
157345 GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
59 GTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
157385 TATCACTTTT
Statistics
Matches: 651, Mismatches: 17, Indels: 24
0.94 0.02 0.03
Matches are distributed among these distances:
92 130 0.20
94 6 0.01
95 42 0.06
98 379 0.58
99 53 0.08
105 6 0.01
107 35 0.05
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
Found at i:156943 original size:196 final size:196
Alignment explanation
Indices: 156603--157705 Score: 1267
Period size: 196 Copynumber: 5.4 Consensus size: 196
156593 TGGCCTTTTC
156603 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTTAAGTCCAA
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC-TTTAAGTCCAA
*
156668 TATCGCTGGCCTTGAATCAGCATATTGGCATCTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
65 TATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
156733 TCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC
130 TCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC
156798 TT
195 TT
*
156800 CATCCTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
156865 ATCGCTGGCCATGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACT
156930 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT
131 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT
156995 T
196 T
156996 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
157061 ATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACT
157126 CAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT
131 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT
157185 T
196 T
*
157186 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
* * *
157245 ATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTG
66 ATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTG
* * * * * * *
157310 AATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATA
128 ACTCAGCACATTGGCA-CC----T-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
157375 TTGGCATCTTTATCACTTTTCTCAT
187 TTGG---------CA----TCT--T
* * * * * *
157400 CATCATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCA
1 CATC--TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCA
* * ** * * * * * *
157465 ATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGG
64 ATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCATCTTTAAGTCCAATGTAGCTGG
* * * * *
157530 CCATGAATCAACATATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTG
123 CCTTGACTCAGCACATTGG---C---A-C-C---TTCATCTTTAAGTCCAATATCGCTGGCCTTG
*
157595 AATCAGCATATTGGCACCTT
177 AATCAGCATATTGGCATCTT
** * * * * *
157615 CATCATCTCTAAAAACCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGT
1 CATC-T-T-T--AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGT
* * *
157680 TCAATGTAGCTGGCCTTGAATCAGCA
61 CCAATATCGCTGGCCTTGAATCAGCA
157706 CGTTGACATC
Statistics
Matches: 806, Mismatches: 45, Indels: 89
0.86 0.05 0.09
Matches are distributed among these distances:
184 39 0.05
186 6 0.01
187 41 0.05
190 90 0.11
192 1 0.00
196 282 0.35
197 53 0.07
199 36 0.04
208 2 0.00
212 3 0.00
214 6 0.01
215 6 0.01
216 39 0.05
217 2 0.00
218 77 0.10
220 4 0.00
221 2 0.00
222 35 0.04
225 33 0.04
226 1 0.00
228 1 0.00
230 39 0.05
231 7 0.01
232 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (196 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACT
CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT
T
Found at i:157168 original size:92 final size:92
Alignment explanation
Indices: 157048--157318 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
157038 GCACCTTCAT
157048 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
157113 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
157140 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
157205 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
157232 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
157297 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
157319 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:157302 original size:52 final size:54
Alignment explanation
Indices: 157232--157830 Score: 395
Period size: 55 Copynumber: 10.8 Consensus size: 54
157222 ACATTGGCAC
157232 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
157284 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
157339 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA--TTT-TC-TCAT
* *
157403 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
157454 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * * *
157509 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA-TTTTCTCAT
*
157569 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTC-TCAT
* ** * *
157621 CTCTAAAAACCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 CT-T-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
157672 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * * *
157727 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA-TTTTCTCAT
*
157787 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
157831 TTCATCATCT
Statistics
Matches: 421, Mismatches: 82, Indels: 86
0.71 0.14 0.15
Matches are distributed among these distances:
49 61 0.14
50 3 0.01
51 12 0.03
52 43 0.10
53 5 0.01
54 46 0.11
55 111 0.26
57 2 0.00
59 2 0.00
60 83 0.20
61 8 0.02
62 3 0.01
63 2 0.00
64 5 0.01
66 35 0.08
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
Found at i:157474 original size:49 final size:49
Alignment explanation
Indices: 157397--157836 Score: 261
Period size: 49 Copynumber: 8.2 Consensus size: 49
157387 TCACTTTTCT
*
157397 CATCATCAT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
1 CATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
* * * ** *
157445 CATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGA
1 CATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
* * * * *
157494 CATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGG
1 CAT-C----T-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
*
157549 CATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGG
1 ---C---AT--C---TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
* **
157609 CACCTTCATCATCTCTAAAAACCCAATATCGCTGGCCTTGAATCAGCATATTGG
1 CATCTTCATC-T-T-T--AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
* * * ** *
157663 CATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGA
1 CATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
* * * * *
157712 CATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGG
1 CAT-C----T-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
*
157767 CATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGG
1 ---C---AT--C---TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
*
157827 CACCTTCATC
1 CATCTTCATC
157837 ATCTCTAAAA
Statistics
Matches: 303, Mismatches: 57, Indels: 63
0.72 0.13 0.15
Matches are distributed among these distances:
48 8 0.03
49 79 0.26
50 3 0.01
51 2 0.01
52 4 0.01
53 1 0.00
54 46 0.15
55 66 0.22
57 2 0.01
58 2 0.01
60 76 0.25
61 12 0.04
62 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (49 bp):
CATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
Found at i:157521 original size:170 final size:164
Alignment explanation
Indices: 157232--157618 Score: 648
Period size: 170 Copynumber: 2.3 Consensus size: 164
157222 ACATTGGCAC
*
157232 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
157297 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
157362 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
128 ATGAATCAACATATTGGCATCTTTATCAC-TTT-T--TCAT
*
157403 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
*
157468 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCA
64 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
157533 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
129 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
* *
157569 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
157619 ATCTCTAAAA
Statistics
Matches: 209, Mismatches: 5, Indels: 11
0.93 0.02 0.05
Matches are distributed among these distances:
164 47 0.22
166 5 0.02
168 1 0.00
169 3 0.01
170 109 0.52
171 6 0.03
173 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (164 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTTCAT
Found at i:157537 original size:104 final size:104
Alignment explanation
Indices: 157413--157772 Score: 436
Period size: 104 Copynumber: 3.4 Consensus size: 104
157403 CATTTTAAGT
* *
157413 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCATGAATCAACATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
157478 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGC
66 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGC
* *
157517 CCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAAT
1 CCAATATCGCTGGCCATGAATCAACATATTGG---C---AT--C---TTCATCTTTAAGTTCAAT
* * ** * ** ** **
157582 ATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTCATCATC-TCTAAAAAC
55 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTC-TCATCTTTAGGC
* *
157631 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCATGAATCAACATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
157696 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGC
66 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGC
*
157735 CCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 CCAATATCGCTGGCCATGAATCAACATATTGGCATCTT
157773 TATCACTTTT
Statistics
Matches: 209, Mismatches: 33, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
103 43 0.21
104 75 0.36
106 1 0.00
107 1 0.00
108 2 0.01
110 2 0.01
111 1 0.00
112 1 0.00
114 40 0.19
115 43 0.21
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (104 bp):
CCAATATCGCTGGCCATGAATCAACATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGC
Found at i:157571 original size:60 final size:61
Alignment explanation
Indices: 157500--157837 Score: 210
Period size: 60 Copynumber: 6.0 Consensus size: 61
157490 TTGACATCCT
* * * *
157500 TTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
* * * *
157561 TTTT-TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCA-
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
** * * *
157620 -----TC-TCTAAAAACCCAATATCGCTGGCCTTGAATCAGCATATTGG------CAT--C
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
** * * * * **
157667 ---T-TCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTT-G-A----CATC-C
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
* * * *
157717 TTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 -TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
* * * *
157779 TTTT-TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCA
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCA
157838 TCTCTAAAAA
Statistics
Matches: 219, Mismatches: 41, Indels: 35
0.74 0.14 0.12
Matches are distributed among these distances:
48 6 0.03
49 33 0.15
50 1 0.00
54 37 0.17
55 34 0.16
56 1 0.00
57 1 0.00
60 94 0.43
61 11 0.05
62 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (61 bp):
TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
Found at i:157571 original size:115 final size:115
Alignment explanation
Indices: 157449--157820 Score: 482
Period size: 115 Copynumber: 3.3 Consensus size: 115
157439 TATTGGCATC
* *
157449 TTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTA
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTA
157514 GGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTT
66 GGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTT
* ** * ** **
157564 TTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTCATCATC-TCTAA
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTC-TCATCTTT
** * * *
157627 AAACCCAATATCGCTGGCCTTGAATCAGCATATTGG---C---AT--C---
65 AGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTT
* *
157667 TTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTA
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTA
157732 GGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTT
66 GGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTT
*
157782 TTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCA
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCA
157821 TATTGGCACC
Statistics
Matches: 210, Mismatches: 33, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
103 43 0.20
104 40 0.19
106 1 0.00
107 1 0.00
108 2 0.01
110 2 0.01
111 1 0.00
112 1 0.00
114 40 0.19
115 79 0.38
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (115 bp):
TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTA
GGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTT
Found at i:157643 original size:54 final size:54
Alignment explanation
Indices: 157577--157879 Score: 224
Period size: 54 Copynumber: 5.6 Consensus size: 54
157567 ATCTTTAAGT
* *
157577 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTCTAAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTCTAAAAGC
* *
157631 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC-T-T-T--AAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTCTAAAAGC
* * * ** * ** ** *
157680 TCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTC-TCATCTTTAGGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTCATCATC-TCTAAAAGC
* * * * * ** *
157735 CCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTTCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCA-----TC-TCTAAAAGC
* *
157795 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTCTAAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTCTAAAAGC
* * *
157849 CCAATGA-CGCTGGTCATGAATCAGCACATTG
1 CCAAT-ATCGCTGGCCTTGAATCAGCATATTG
157880 TCATTTTTCG
Statistics
Matches: 194, Mismatches: 42, Indels: 26
0.74 0.16 0.10
Matches are distributed among these distances:
49 30 0.15
50 6 0.03
51 1 0.01
52 2 0.01
53 2 0.01
54 76 0.39
55 30 0.15
60 47 0.24
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTCTAAAAGC
Found at i:157650 original size:218 final size:218
Alignment explanation
Indices: 157413--157879 Score: 891
Period size: 218 Copynumber: 2.1 Consensus size: 218
157403 CATTTTAAGT
157413 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
157478 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACA
66 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACA
157543 TATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
131 TATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
157608 GCACCTTCATCATCTCTAAAAAC
196 GCACCTTCATCATCTCTAAAAAC
157631 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
157696 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACA
66 TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACA
157761 TATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
131 TATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
157826 GCACCTTCATCATCTCTAAAAAC
196 GCACCTTCATCATCTCTAAAAAC
* * *
157849 CCAATGA-CGCTGGTCATGAATCAGCACATTG
1 CCAAT-ATCGCTGGCCTTGAATCAGCATATTG
157880 TCATTTTTCG
Statistics
Matches: 245, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
218 244 1.00
219 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (218 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCT
TGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACA
TATTGGCATCTTTATCACTTTTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
GCACCTTCATCATCTCTAAAAAC
Found at i:158673 original size:33 final size:33
Alignment explanation
Indices: 158636--158702 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
158626 TTCAATGATT
158636 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
158669 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
158702 T
1 T
158703 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:158674 original size:13 final size:13
Alignment explanation
Indices: 158656--158680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
158646 CATAAAATGT
158656 TGTATCGATACAA
1 TGTATCGATACAA
158669 TGTATCGATACA
1 TGTATCGATACA
158681 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:158761 original size:13 final size:13
Alignment explanation
Indices: 158743--158767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
158733 ATTACTCAAA
158743 TGTATCGATACAT
1 TGTATCGATACAT
158756 TGTATCGATACA
1 TGTATCGATACA
158768 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:158832 original size:52 final size:52
Alignment explanation
Indices: 158776--158895 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
158766 CACTGATCTT
* *
158776 TGTATCGATACATGCAGGCAATTTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
158828 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
158880 TGTATCGATACATGCA
1 TGTATCGATACATGCA
158896 AACAACTTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:162391 original size:30 final size:31
Alignment explanation
Indices: 162347--162404 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
162337 ATTTAAATAT
*
162347 GGTCATCTTTTCAACTAAT-GGTTTCATTTC
1 GGTCATCTTCTCAACTAATAGGTTTCATTTC
*
162377 GGTCATGTTCTCAACTAATAGGTTTCAT
1 GGTCATCTTCTCAACTAATAGGTTTCAT
162405 CCTAGTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (31 bp):
GGTCATCTTCTCAACTAATAGGTTTCATTTC
Found at i:162463 original size:31 final size:31
Alignment explanation
Indices: 162428--162556 Score: 145
Period size: 31 Copynumber: 4.2 Consensus size: 31
162418 TTAATCGATG
* * *
162428 GTTTTGTCTAAATCATCTTTTTGAATAATAA
1 GTTTTGCCTTAATCATCTTTTTGACTAATAA
*
162459 GTTTTGCCTTAGTCATCTTCTTTGACTAATAA
1 GTTTTGCCTTAATCATCTT-TTTGACTAATAA
*
162491 GTTTTGCCTTAATCATATTTTTGACTAAT-A
1 GTTTTGCCTTAATCATCTTTTTGACTAATAA
* * * *
162521 GTTTCG-TTTCAGTCATTTTTTTGACTAATAA
1 GTTTTGCCTT-AATCATCTTTTTGACTAATAA
162552 GTTTT
1 GTTTT
162557 AGCATAGTTG
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
29 2 0.02
30 23 0.27
31 31 0.37
32 28 0.33
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (31 bp):
GTTTTGCCTTAATCATCTTTTTGACTAATAA
Found at i:162489 original size:32 final size:31
Alignment explanation
Indices: 162440--162556 Score: 148
Period size: 32 Copynumber: 3.8 Consensus size: 31
162430 TTTGTCTAAA
*
162440 TCATCTTTTTGAATAATAAGTTTTGCCTTAG
1 TCATCTTTTTGACTAATAAGTTTTGCCTTAG
*
162471 TCATCTTCTTTGACTAATAAGTTTTGCCTTAA
1 TCATCTT-TTTGACTAATAAGTTTTGCCTTAG
* * *
162503 TCATATTTTTGACTAAT-AGTTTCG-TTTCAG
1 TCATCTTTTTGACTAATAAGTTTTGCCTT-AG
*
162533 TCATTTTTTTGACTAATAAGTTTT
1 TCATCTTTTTGACTAATAAGTTTT
162557 AGCATAGTTG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
29 2 0.03
30 23 0.31
31 22 0.29
32 28 0.37
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.50
Consensus pattern (31 bp):
TCATCTTTTTGACTAATAAGTTTTGCCTTAG
Found at i:163687 original size:33 final size:32
Alignment explanation
Indices: 163626--163689 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
163616 TGCTAGTTTT
163626 ATGTATCAATACAATAAACATGTATCGATACA
1 ATGTATCAATACAATAAACATGTATCGATACA
*
163658 ATGTATCAATACAA-AGCAATATGTATCGATAC
1 ATGTATCAATACAATA--AACATGTATCGATAC
163690 TTCTAGGCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 1 0.03
32 14 0.48
33 14 0.48
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.28
Consensus pattern (32 bp):
ATGTATCAATACAATAAACATGTATCGATACA
Done.